BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780836|ref|YP_003065249.1| putative type I
restriction-modification system DNA methylase [Candidatus Liberibacter
asiaticus str. psy62]
         (674 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040513|gb|ACT57309.1| putative type I restriction-modification system DNA methylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 674

 Score =  818 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 674/674 (100%), Positives = 674/674 (100%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL
Sbjct: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF
Sbjct: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP
Sbjct: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL
Sbjct: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP
Sbjct: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL
Sbjct: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG
Sbjct: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV
Sbjct: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI
Sbjct: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ
Sbjct: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV
Sbjct: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660

Query: 661 EAQIATLLEEMATE 674
           EAQIATLLEEMATE
Sbjct: 661 EAQIATLLEEMATE 674


>gi|121997946|ref|YP_001002733.1| N-6 DNA methylase [Halorhodospira halophila SL1]
 gi|121589351|gb|ABM61931.1| N-6 DNA methylase [Halorhodospira halophila SL1]
          Length = 659

 Score =  801 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/674 (43%), Positives = 410/674 (60%), Gaps = 20/674 (2%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + + +A FIW  A+ L GD K + +G+VILPFTLLRRLEC LEPT+  V        
Sbjct: 2   NTENHSQMAGFIWSVADLLRGDLKQSQYGRVILPFTLLRRLECVLEPTKEQVLAAAKEHA 61

Query: 64  GS--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +      + A   F+NTS  +L TL  T T ++L SY+ SFS +A+ +FE F+F 
Sbjct: 62  DKPLGVRERLLRRAADQPFFNTSPLTLGTLSDTQTADDLMSYVQSFSPDAREVFEHFNFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L    LLY++ + F+ ++L P  + +  M +I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSANNLLYQVVQRFAAMDLSPGRISNFGMGSIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           DVVHL T+L+L   D      P  + T+YDP  GTGGFL+++  ++     +      + 
Sbjct: 182 DVVHLTTSLVLTDQDDKL--QPHSVVTVYDPAAGTGGFLSESDAYIQQVSDN----VTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+           +NI+ G+TLS D   G+RF + L+NPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKG-------QQVENIKLGNTLSDDELAGERFDFMLANPPF 288

Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I+L
Sbjct: 289 GVEWKKVQKQVTDEHKRWGYNGRFGPGLPRVSDGSLLFLLHLVSKVRDPREGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LLE DL+EAIVALPTD+F+ T IATY+WILSN K  ERRG
Sbjct: 349 NGSPLFTGGAGSGESEIRRFLLERDLVEAIVALPTDMFYNTGIATYVWILSNDKPPERRG 408

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +VQLINAT+ ++ +R   G KR+ I+D     I+ +Y + E  + S++     FGYRRI 
Sbjct: 409 RVQLINATERYSKMRKSLGSKRQYIDDTNIDNIVRLYGAFEESEESKLFPVAEFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F   +  + R+  +   +KL    Q+  L   + M  Q+    + +      
Sbjct: 469 VERPLRLNFQASEERIRRILDEKPIQKLDEDTQARLLAACEAMDGQM---LYRDRQAFTR 525

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
                 +  +VK     + A +NA   +DP A P TD  G   PDT+L ++ENVP  ES+
Sbjct: 526 DLKRALEEREVKLGAPPMKAVLNALSERDPEAKPCTDAKGNPEPDTSLRDHENVPLTESV 585

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA+ID+   D +D E+G VGYEI FNR FY++ P R L++IDA+LK 
Sbjct: 586 YDYFEREVRPHVPDAWIDEAKRDAQDGEVGIVGYEIPFNRHFYKFTPPRPLEEIDADLKV 645

Query: 660 VEAQIATLLEEMAT 673
              +I  ++EE++ 
Sbjct: 646 CTDRIKRMIEELSA 659


>gi|152973655|ref|YP_001338695.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150958437|gb|ABR80465.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 684

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + 
Sbjct: 10  MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 69

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           AF  ++++L++ ++  A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+
Sbjct: 70  AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 129

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 130 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 189

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+  KIPP+
Sbjct: 190 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 249

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 250 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 309

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 310 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 369

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 370 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 429

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G  SRMLDYRTFGYRRI+
Sbjct: 430 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 489

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LDK G+ RLEA+  W KLS  HQ+FW + LKP++ Q  PY WAE+FV  S
Sbjct: 490 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 549

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I
Sbjct: 550 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 609

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 610 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 669

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A+E
Sbjct: 670 VEAEIAALLAEVASE 684


>gi|152969515|ref|YP_001334624.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|294496730|ref|YP_003560423.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae]
 gi|150954364|gb|ABR76394.1| DNA methylase M, host modification [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339439|gb|ADE43993.1| putative type I restriction-modification system DNA methylase
           [Klebsiella pneumoniae]
          Length = 675

 Score =  799 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/675 (78%), Positives = 593/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE + 
Sbjct: 1   MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAHD 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           AF  ++++L++ ++  A Y FYNTSEYSL TLGST TR NLE YIA FSDNA+AIFE+F+
Sbjct: 61  AFKDADVELDTILRSTAEYPFYNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFE 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHPD VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPDVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G+  KIPP+
Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGNRDKIPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKTAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLE+DLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLEDDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++D+QRRQILDIY + E G  SRMLDYRTFGYRRI+
Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDEQRRQILDIYAAGETGALSRMLDYRTFGYRRIR 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LDK G+ RLEA+  W KLS  HQ+FW + LKP++ Q  PY WAE+FV  S
Sbjct: 481 VLRPLRMTLELDKVGMERLEAEAAWEKLSDAHQTFWREALKPLIGQTQPYSWAETFVSNS 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVK++K+ I A INAFG KDP+A+PVTD NGE +PDT+LT+YENVPYLE I
Sbjct: 541 IKSDEAKQLKVKSNKTLITALINAFGHKDPKAEPVTDSNGELVPDTDLTDYENVPYLEDI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA++D+ F D +D ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 601 DDYFAREVLPHVPDAWLDESFTDARDGQLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A+E
Sbjct: 661 VEAEIAALLAEVASE 675


>gi|120553176|ref|YP_957527.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120323025|gb|ABM17340.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 661

 Score =  794 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/677 (42%), Positives = 407/677 (60%), Gaps = 20/677 (2%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EK 58
           MT+   + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT++ V    +
Sbjct: 1   MTDDQTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                   +  +  ++ AG  F+N S  SL+TL  + T ++L SY+ SFS +A+ IFE F
Sbjct: 61  EHQAKPDAVREKLLLRAAGQQFFNASPLSLATLSDSQTADDLMSYVQSFSQDAREIFEHF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F   + +L    LLY++ + F+ I+L P T+ +  M  I+E LIR+F    +E A +  
Sbjct: 121 HFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKFAESSNETAGEHF 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+VHL T+L+L   +      P  I T+YDPT GTGGFL++   ++           
Sbjct: 181 TPRDIVHLTTSLVLTGQEGRLT--PNSIVTIYDPTAGTGGFLSEGDEYIQQ----ISESV 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  HGQEL PE++A+C A MLI+  E         NI+ G+TLS D     +F   LSN
Sbjct: 235 TVSLHGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSDDQLATNKFDLMLSN 287

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  
Sbjct: 288 PPFGVEWKKVQKQVTDEHKHRGFDGRFGPGLPRVSDGSLLFLMHLVSKMRDAREGGSRIG 347

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+TY+W+LSN K  E
Sbjct: 348 IILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGISTYVWVLSNNKPAE 407

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           RRGKVQLI+ATD  T +R   G KR+ +++  + +I+ +Y   +  K S++     FGYR
Sbjct: 408 RRGKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKKSKIFPIEAFGYR 467

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPL+++F   +  +AR+  +    K+    Q       + M  +     +     
Sbjct: 468 RITVERPLQLNFQTSEERIARIADEKAILKMDQEDQGNIHAACRAMNAKT---VYRNRKQ 524

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
            +          +V      + + +NA   +DP AD  TD  G    DT L +YENVP  
Sbjct: 525 FQKALKASLTDHQVYLGAPQLKSLLNALSERDPEADICTDSKGNPEADTGLRDYENVPLS 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYFVREV PHVPDA+ID+   DEKD E+G VG+EI FNR FY++ P R L++IDA+
Sbjct: 585 ESVYDYFVREVKPHVPDAWIDESKRDEKDGEVGIVGFEIPFNRHFYEFTPPRPLEEIDAD 644

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 645 LKQCTDRIKQMIEELSA 661


>gi|332975486|gb|EGK12376.1| N-6 DNA methylase [Desmospora sp. 8437]
          Length = 684

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/693 (40%), Positives = 391/693 (56%), Gaps = 40/693 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + +   NFIW  AE L GD+K +++GKV+LPFT+LRRL+C L PT++ V  K  
Sbjct: 10  MSDQLTNFSEKTNFIWSIAEILRGDYKQSEYGKVVLPFTVLRRLDCVLSPTKAQVLAKME 69

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAI 114
              G  +D E        V    F NTS +   TL     N   NL++YI  FS  A+ I
Sbjct: 70  EIQGMGLDPEQAEPVLTSVTDERFCNTSPFDFQTLKAEPDNLAENLKAYIRGFSREARDI 129

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            + F+F   I RLE+A LLY + + F+ I+LHPD V +  M  I+E LIRRF  + +E A
Sbjct: 130 IDYFNFHVQIDRLEEADLLYLVVERFAAIDLHPDRVSNLEMGYIFEELIRRFSEQSNETA 189

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   LL + D+       G+IRTLYDP CGTGG L+ A  ++ +     
Sbjct: 190 GEHFTPREVIRLMVNLLFNEDEEGELNRKGIIRTLYDPACGTGGMLSVAEEYLKELNDQA 249

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQEL  E++A+C A ML++  +          I+ G++ + D    ++F Y
Sbjct: 250 QLK----VFGQELNAESYAICKADMLLKGQDP-------SRIKFGNSFTHDGLAHEKFDY 298

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K + A+E EHK  G  GRFG GLP++SDGS+LFL H+ +K++ P  GG
Sbjct: 299 MLSNPPFGVEWKKVQRAIEDEHKQQGYAGRFGAGLPRVSDGSLLFLQHMISKMKSPEEGG 358

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R AIV + SPLF G A SGES IRRW++END +EAIVALP  LF+ T I+TY+WI++NR
Sbjct: 359 SRLAIVFNGSPLFTGGAESGESNIRRWIIENDWLEAIVALPDQLFYNTGISTYVWIVTNR 418

Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K   R+GK+QLIN    + ++R   G KR  +  D   +I  I+     GK+S++ D   
Sbjct: 419 KRPARKGKIQLINGVKFFQTMRKSLGNKRHELGQDHIDEISRIHGEFREGKYSKIFDNAD 478

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDIL 519
           FGYRRI V RPLR+   + + G+ RL     ++ L+   +                  IL
Sbjct: 479 FGYRRITVERPLRLRIQVTEKGIQRLTEQTPFQNLAKSRKKGAAGEKEIADGKAQQEAIL 538

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           K +   +    + +            K   VK + S   A + A G +D  A    D  G
Sbjct: 539 KTLGGMVTEKVYTDRDAFLKELKGVFKEQGVKLTASIQKAILAACGERDETAQVCKDSKG 598

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
              PD  L +YENVP  E I DY  REV PHVPDA+I        D+E  +VGYEI F R
Sbjct: 599 NVEPDPELRDYENVPLKEEIHDYMEREVKPHVPDAWI--------DEEKTKVGYEIPFTR 650

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            FY+Y+P R L++IDAE++ +E +I  +L E+A
Sbjct: 651 HFYEYKPLRPLEEIDAEIQALEKEILGMLGEIA 683


>gi|78357909|ref|YP_389358.1| type I restriction-modification system DNA methylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220314|gb|ABB39663.1| type I restriction-modification system DNA methylase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 675

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 528/675 (78%), Positives = 589/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M EFTGSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALEPTR AVRE Y 
Sbjct: 1   MNEFTGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALEPTREAVREAYA 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F  ++++L++ ++  A Y F+NTSEYSL TLGST TR NLE YIA FSDNA+AIFE+FD
Sbjct: 61  TFKDADVELDTILRSTAEYPFFNTSEYSLGTLGSTKTRRNLEDYIALFSDNARAIFEEFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+ RLEKAGLLYKIC+NF+ I+LHP+ VPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTVIRLEKAGLLYKICQNFAKIDLHPEVVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHV D G   K+PP+
Sbjct: 181 PRDIVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVGDYGGRDKVPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI+QGSTLS D F G+RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNIRQGSTLSNDQFAGERFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK+AVE EHK GELGRFGPGLPKISDGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKNAVEAEHKKGELGRFGPGLPKISDGSMLFLMHLASKLELPINGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG A SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN+K +ER+
Sbjct: 361 LSGSPLFNGGAASGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNKKPQERK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWTSIRNEG KRRI++DDQRRQILDIY + E    SRMLDYRTFGYRRIK
Sbjct: 421 GKVQLINATDLWTSIRNEGNKRRIVSDDQRRQILDIYAAGETDALSRMLDYRTFGYRRIK 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM   LDK G+ RLEAD  W KL   HQ+FW + LKP++ Q   YGWAE+F K++
Sbjct: 481 VLRPLRMILELDKAGMERLEADPAWEKLPDAHQAFWRNALKPLIGQTQTYGWAETFAKDT 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           IKS+EAK LKVKA+K+FI A INAFG KDP A+PVTD NG  +PDT+LT+YENVPY+E I
Sbjct: 541 IKSDEAKQLKVKANKTFIAALINAFGHKDPEAEPVTDANGNLVPDTDLTDYENVPYMEDI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDAY+D+ F D KD ++GRVGYEINFNRFFYQYQP RKL DID +LK 
Sbjct: 601 DDYFAREVLPHVPDAYLDESFTDAKDGKLGRVGYEINFNRFFYQYQPPRKLHDIDEDLKQ 660

Query: 660 VEAQIATLLEEMATE 674
           VEA+IA LL E+A++
Sbjct: 661 VEAEIAALLAEVASK 675


>gi|120553352|ref|YP_957703.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120323201|gb|ABM17516.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 661

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/677 (42%), Positives = 404/677 (59%), Gaps = 20/677 (2%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EK 58
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT++ V    +
Sbjct: 1   MTHDKTNHSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKAQVLSAAQ 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                   +  +  ++ A   F+N S  SL+TL  + T ++L SY+ SFS +A+ IFE F
Sbjct: 61  EHQTKPDAVREKLLLRAADQQFFNASPLSLATLSDSQTADDLMSYVQSFSQDAREIFEHF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F   + +L    LLY++ + F+ I+L P T+ +  M  I+E LIR+F    +E A +  
Sbjct: 121 HFEDFVQQLSANNLLYQVVQRFASIDLSPATISNFGMGIIFEELIRKFAESSNETAGEHF 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+VHL T+L+L   +      P  I T+YDPT GTGGFL++   ++           
Sbjct: 181 TPRDIVHLTTSLVLTGQENRLT--PNSIVTIYDPTAGTGGFLSEGDEYIQQ----ISESV 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  HGQEL PE++A+C A MLI+  E         NI+ G+TLS D     +F   LSN
Sbjct: 235 TVSLHGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSDDQLATNKFDLMLSN 287

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  
Sbjct: 288 PPFGVEWKKVQKQVTDEHKHRGFAGRFGPGLPRVSDGSLLFLMHLVSKMRDAREGGSRIG 347

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL+ND++EAIVALPTD+F+ T I+TY+W+LSN K  E
Sbjct: 348 IILNGSPLFTGGAGSGESEIRRYLLQNDMVEAIVALPTDMFYNTGISTYVWVLSNNKPAE 407

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ KVQLI+ATD  T +R   G KR+ +++  + +I+ +Y   +  K S++     FGYR
Sbjct: 408 RKSKVQLIDATDRATKMRKSLGSKRQFVSESDQDEIVRMYGDFQETKKSKIFPIEAFGYR 467

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPL+++F   +  L R+  +   +K+    Q   L   + M  +     +     
Sbjct: 468 RITVERPLKLNFQTSEERLQRIADEKAIQKMDQEDQDKILAACRAMDAE---KVYRNRKQ 524

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
            +          +V  S   + A +NA   +DP AD  TD  G    DT L +YENVP  
Sbjct: 525 FQKALKTSLTDHQVYLSAPQLKALLNALSERDPEADICTDSKGNPEADTGLRDYENVPLS 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYF REV PHVPD +ID+   DEKD E+G VG+EI FNR FY++ P R L++IDA+
Sbjct: 585 ESVYDYFEREVKPHVPDVWIDESKRDEKDGEVGIVGFEIPFNRHFYEFTPPRPLEEIDAD 644

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 645 LKQCTDRIKQMIEELSA 661


>gi|220933788|ref|YP_002512687.1| type I restriction-modification system, M subunit; N-6
           adenine-specific DNA methylase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995098|gb|ACL71700.1| type I restriction-modification system, M subunit; N-6
           adenine-specific DNA methylase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 655

 Score =  786 bits (2029), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/675 (43%), Positives = 407/675 (60%), Gaps = 29/675 (4%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + ++ A+F+W  A+ L GDFK + +G++ILPFTLLRRLEC L PT+ AV  +Y    
Sbjct: 1   MPENFSTTASFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLAPTKQAVLAEYDKRK 60

Query: 64  GSNIDLESFVKVA--GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            S++ +  F++ A  G  FYNTS   L++LG T   +NL++YI SFS  A+ IFE F F 
Sbjct: 61  DSDLPMGPFLEKASGGLKFYNTSPMDLASLGETQVLDNLDTYIRSFSPAAREIFEHFGFH 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L++A LLY++ + F+  +L P    +  M  I+E LIRRF    +E A +  TPR
Sbjct: 121 GFLEKLDEANLLYQVIQRFASTDLSPQAHSNYEMGLIFEELIRRFAESSNETAGEHFTPR 180

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL TALL          +PG I T+YDPT GTGGFL++   ++       ++     
Sbjct: 181 DIVHLTTALLFTDQQEKI--APGKIVTVYDPTAGTGGFLSEGEEYIHSISQDARV----R 234

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE+HA+C+A MLI+  E D       NI+ G+TLS D    ++F + LSNPPF
Sbjct: 235 VFGQELNPESHAICMADMLIKGHEID-------NIKLGNTLSDDQLPAQQFDFMLSNPPF 287

Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G  W+K +  V+ EHK  G  GRFGPGLP++SDGS+LFLMHL +K+      G R  I+L
Sbjct: 288 GVDWKKVQKQVQDEHKLKGHAGRFGPGLPRVSDGSLLFLMHLMSKMRDAKEQGSRIGIIL 347

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR +LENDL+EAIVALPTD+F+ T IATY+W+LSN K  ER+G
Sbjct: 348 NGSPLFTGGAGSGESEIRRHILENDLLEAIVALPTDMFYNTGIATYVWVLSNHKRPERKG 407

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +VQLINATD+   +R   G KR+ + +D    I+ +Y + E  + S++ +   FGYRRI 
Sbjct: 408 RVQLINATDMGDKMRKSLGSKRKYLTEDSIETIVRLYGAFEETETSKIFNTTDFGYRRIT 467

Query: 480 VLRPLRMSFIL-DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           V RPL+++F   D+T LA L+AD  W KL    +   LD L    +        +  +  
Sbjct: 468 VERPLQLAFHPKDETRLAALQADKGWEKLDKALRQAILDALPRFEE--------DKILSR 519

Query: 539 SIKSNEAKTL--KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           S      K                    G  D +A+      G+  P+ +L + ENVP  
Sbjct: 520 STFKKWLKVHMNGATLPAPAFKLLQKHLGEHDDQAEVC-KTKGQPEPNPDLRDNENVPLG 578

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           E I  YF REV+PHVPDA+ID+   DE+D ++G VGYEI FNR FYQY P R L++IDA+
Sbjct: 579 EDIHAYFAREVTPHVPDAWIDESKKDEQDGQVGIVGYEIPFNRHFYQYVPPRPLEEIDAD 638

Query: 657 LKGVEAQIATLLEEM 671
           L  V  +I  LL+E+
Sbjct: 639 LDQVSREIMALLQEV 653


>gi|282901857|ref|ZP_06309763.1| Type I restriction-modification system protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193253|gb|EFA68244.1| Type I restriction-modification system protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 676

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/690 (39%), Positives = 398/690 (57%), Gaps = 31/690 (4%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M  F        +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y 
Sbjct: 1   MENFGEK----VSFIWSVADLIRDTFKRGKYQDVILPFTVLRRLDCVLEPTKVEVLEAYN 56

Query: 61  AFGGSNIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
            +     +L+    K +G++FYNTS Y    L     +   NL+ YI SFS N + + E 
Sbjct: 57  KYKDDLDNLDPQLCKKSGFAFYNTSRYYFEKLLDDPKHLTANLKLYINSFSGNMREVLEK 116

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           FDF +TI +LE++ LL+ + + F  I+LHPD V +  M  I+E LIR+F   + E   + 
Sbjct: 117 FDFPNTIDKLEQSDLLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEH 176

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   L+   D A       + RT+YDP CG+GG LT A + + +      + 
Sbjct: 177 FTPREVIQLMVNLIFSQDKAQLS-QEYITRTVYDPCCGSGGMLTSAKDRILELNPKADVF 235

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQE+ PET A+C + + ++ ++       ++NI+ GSTLS D  + K F Y L+
Sbjct: 236 ----LFGQEVNPETFAICKSDLYMKSVD----GRDAENIKFGSTLSNDQHSDKTFDYLLA 287

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+GK W++DKDAVE E +     RF  G P+ISDG +LFL  + ++++    GG R A
Sbjct: 288 NPPYGKDWKRDKDAVEAEAQKAG-SRFSAGTPRISDGQLLFLQQMLSRMKGVEQGGSRVA 346

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IV++ SPLF G AGSGESEIRRW+LEND +EAIVALP  LF+ T IATY+W+L+N K +E
Sbjct: 347 IVMNGSPLFTGDAGSGESEIRRWILENDWLEAIVALPEQLFYNTGIATYIWVLTNHKAKE 406

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+GKVQLINA+D W  +R   G KRR I  +Q ++I  I+ S    + S++ D   FGYR
Sbjct: 407 RKGKVQLINASDFWVPMRKSLGSKRREIKSEQIQEITKIFESFAPSEVSKIFDSEDFGYR 466

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMM 523
           ++ V RPL+++F      + RL+    +  L+   +                  ++  M+
Sbjct: 467 KVTVERPLKLNFQASPERIERLKEQSAFVALAVSKKKSAEGKAIEEHAGRDQQKLILAML 526

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
           Q +    + +    E +     K+  V  +     A + A   +D  A   +D  G   P
Sbjct: 527 QTLPDTLYKDREQFEKVLKKAIKSEGVTVAAPVYKAILTALSERDETAKVCSDRQGNPEP 586

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           D+ L + ENVP  E + +YF REV+PHVPDA+I +   D KD EIG+VGYEINFNR+FY+
Sbjct: 587 DSELRDTENVPLKEDVAEYFEREVTPHVPDAWISEGVRDAKDGEIGKVGYEINFNRYFYK 646

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           YQP R L++I+A++K VE +I  +L E+A 
Sbjct: 647 YQPPRALEEIEADIKAVEGEILEMLREVAG 676


>gi|152998551|ref|YP_001355472.1| N-6 DNA methylase [Shewanella baltica OS185]
 gi|151367565|gb|ABS10564.1| N-6 DNA methylase [Shewanella baltica OS185]
          Length = 675

 Score =  778 bits (2008), Expect = 0.0,   Method: Composition-based stats.
 Identities = 520/675 (77%), Positives = 589/675 (87%), Gaps = 1/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTEF+GSAAS A+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLECALE TR  VRE Y 
Sbjct: 1   MTEFSGSAASQADFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECALESTREVVREAYD 60

Query: 61  AFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F  + ++L+  ++  AGY FYNTSEYSLSTLGST TR NLE YI+ FSDNA+AIFE+F+
Sbjct: 61  NFKDAEVELDPILRQTAGYPFYNTSEYSLSTLGSTKTRRNLEDYISLFSDNARAIFEEFE 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +TI RLEKAGLL+ ICKNF+GI+LHPDTVPDRVMSNIYEHLIRRFG+EV+EGAEDFMT
Sbjct: 121 FGNTIIRLEKAGLLFTICKNFAGIDLHPDTVPDRVMSNIYEHLIRRFGAEVNEGAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLATALLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMNHVAD G+H+KIPP+
Sbjct: 181 PRDVVHLATALLLDPDDALFEASPGLIRTLYDPTCGTGGFLTDAMNHVADYGNHYKIPPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           LVPHGQELEPETHAVCVAGMLIRRLESDP RDLSKNI QGSTLS D F G RFHYCLSNP
Sbjct: 241 LVPHGQELEPETHAVCVAGMLIRRLESDPGRDLSKNILQGSTLSNDQFAGDRFHYCLSNP 300

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFGKKWEKDK AVE+EHK GELGRFGPGLP+I+DGSMLFLMHLA+KLELP NGGGRAAIV
Sbjct: 301 PFGKKWEKDKTAVEREHKQGELGRFGPGLPRINDGSMLFLMHLASKLELPKNGGGRAAIV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLFNG AGSGESEIRRWLLENDL+EAIVALPTD+FFRTNIATYLWILSN+KT+ R+
Sbjct: 361 LSGSPLFNGGAGSGESEIRRWLLENDLVEAIVALPTDIFFRTNIATYLWILSNKKTDNRK 420

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           GKVQLINATDLWT I+NEG KRRI+ DDQRRQILDIY + EN   S+M+DY+ FGYRRIK
Sbjct: 421 GKVQLINATDLWTPIKNEGNKRRIVGDDQRRQILDIYAAAENDALSKMVDYQVFGYRRIK 480

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           VLRPLRM+  LD+ GL+ LEA  TW+KL   H++FW + +KP + +   Y WAE+F KE+
Sbjct: 481 VLRPLRMTLKLDEQGLSTLEATDTWQKLPVEHKAFWREAIKPQLGETKEYIWAETFTKET 540

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
            K+ +AK LKVK +K+FI A I AFG+ DP A+PV D  G  +PDT+LT+YENVPYL+SI
Sbjct: 541 AKTPDAKLLKVKGNKTFITALIAAFGKNDPDAEPVIDAQGNIVPDTDLTDYENVPYLDSI 600

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           QDYF REV PH PDAYID+ FID++DK++GRVGYEINFNRFFYQYQP RKL DIDAELK 
Sbjct: 601 QDYFAREVLPHAPDAYIDESFIDDRDKQLGRVGYEINFNRFFYQYQPPRKLHDIDAELKE 660

Query: 660 VEAQIATLLEEMATE 674
           VE++IA LL E+ATE
Sbjct: 661 VESEIAALLAEVATE 675


>gi|327479500|gb|AEA82810.1| N-6 DNA methylase [Pseudomonas stutzeri DSM 4166]
          Length = 660

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/676 (41%), Positives = 398/676 (58%), Gaps = 23/676 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT+ AV  +     
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKEAVIRESYAQE 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +     ++ AG  F+N S+ +L TL  T T  +L SY+ SFS +A+ IFE F F 
Sbjct: 62  GRPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQS----ISQQVTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299
            HGQEL PE++A+C A MLI+  +        +NI+ G+TLS D  TG    F + LSNP
Sbjct: 236 LHGQELNPESYAICKADMLIKGQKV-------ENIKLGNTLSDDQLTGAEHHFDFMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG +W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I
Sbjct: 289 PFGVEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K  ER
Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAER 408

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLI+ +  +  +R   G KR+ I D+Q  +++ +Y   E    S++     FGYRR
Sbjct: 409 QGKVQLIDGSQHFGKMRKSLGSKRQYITDEQIDELVRLYGRFEETAQSKIFPVEAFGYRR 468

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I V RPLR++F      + ++  +    KL    +   ++ L+ M   +           
Sbjct: 469 ITVERPLRLNFQTSAERIEKVLEEKAIEKLEAPARQRLIEALQAMDANVLH---RNREQF 525

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
             +         V  S   + A +NA   +DP AD    V G+   D  L + ENVP  E
Sbjct: 526 SKLLKKTLSAHDVSPSTPELKAILNALSERDPEADICL-VKGKPEADAGLRDNENVPLGE 584

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           S+ DYF REV PHVPDA+ID+   D +D E+G VG+EI FNR FY +QP R L DID +L
Sbjct: 585 SVYDYFEREVKPHVPDAWIDESKTDAQDGEVGVVGFEIPFNRHFYVFQPPRPLADIDRDL 644

Query: 658 KGVEAQIATLLEEMAT 673
           K    +I  ++E ++ 
Sbjct: 645 KACTDRIKQMIEGLSA 660


>gi|77166145|ref|YP_344670.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|254436238|ref|ZP_05049745.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
 gi|76884459|gb|ABA59140.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|207089349|gb|EDZ66621.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
          Length = 661

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/677 (41%), Positives = 397/677 (58%), Gaps = 24/677 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LA 61
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT+  V ++     
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKDKVVQQATVHQ 61

Query: 62  FGGSNIDLESFVKVAG-YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               ++      + AG   F+N S  +L TL  T T  +L SY  SFS +A  IFE F+F
Sbjct: 62  HKPDHVREMLLRRAAGDLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + + +L  A LLY++ + F+  +L P  + +  M  I+E LIRRF    +E A +  TP
Sbjct: 122 ENFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD+VHL T+L++   D     +P  I T+YDPT GTGGFL++   ++            +
Sbjct: 182 RDIVHLTTSLVITGQDDKL--APNRIVTIYDPTAGTGGFLSEGDEYIQS----ISEKVSV 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCLSN 298
             HGQEL PE++A+C A MLI+  +         NI+ G+TLS D       RF + LSN
Sbjct: 236 SLHGQELNPESYAICKADMLIKGQDV-------ANIKLGNTLSNDQLTGPEHRFDFMLSN 288

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  
Sbjct: 289 PPFGVEWKKVQKQITGEHKHKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL++DL+EAIVALPTD+F+ T IATY+W+LSN K  E
Sbjct: 349 IILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIVALPTDMFYNTGIATYVWLLSNHKPAE 408

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           RRGKVQLI+ +  +  +R   G KR+ +  +Q  +++ +Y + E    S++     FGYR
Sbjct: 409 RRGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVCLYGAFEETPQSKIFPINAFGYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPLR++F      +  +  +   +KL    +    D L  M        +     
Sbjct: 469 RITVERPLRLNFQASAERIDNVLQEKAIQKLDDTARQQLADALGAMD---PSPLYRNREQ 525

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
              +         V  S     A +N  G++DP+AD  T   G+  PDT L + ENVP  
Sbjct: 526 FAKLLKKTLTAHGVSLSTPEQKALLNGLGKRDPKADICT-TKGKPEPDTGLRDNENVPLG 584

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYF REV PHVPDA+I++   D  D E+G VG+EI FNR FY +QP R L++ID +
Sbjct: 585 ESVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRD 644

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 645 LKACTDRIKQMIEELSA 661


>gi|77361018|ref|YP_340593.1| type I restriction-modification system M subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875929|emb|CAI87150.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 684

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/699 (43%), Positives = 414/699 (59%), Gaps = 45/699 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   + +S A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV EKY 
Sbjct: 1   MTDN--NFSSTAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPAVLEKYE 58

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           A     I+   +     A  SFYNTS+  L+ LG T+  +NLESYI SFS NA+ IFE F
Sbjct: 59  AVKAMPIEAQDKLLTHAAQLSFYNTSKMDLNRLGETDVASNLESYIQSFSPNAREIFEHF 118

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF +TI +L +A LLYK+ K F+  +LHPD + +  M  ++E LIRRF    +E A +  
Sbjct: 119 DFFNTIDKLAEADLLYKVAKRFATTDLHPDVINNYGMGLVFEELIRRFAESSNETAGEHF 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+V L T+L+   DD    +S G++R++YDPT GTGGFL+  M +V +         
Sbjct: 179 TPRDIVRLTTSLVFTNDDDALTQS-GLVRSIYDPTAGTGGFLSSGMEYVLELNDKA---- 233

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQEL PE++A+C A MLI+  + D       NI+ G+TLS D    ++F Y LSN
Sbjct: 234 SLSAFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRTEKFDYMLSN 286

Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W+K +  +  EH   G  GRFG GLP++SDGS+LFLMHL +K+     GG R  
Sbjct: 287 PPFGVDWKKIQKQINDEHTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPQHEGGSRIG 346

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+W+LS  K   
Sbjct: 347 IILNGSPLFTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWVLSTHKPAN 406

Query: 418 RRGKVQLINATD-----------------------LWTSIRN-EGKKRRIINDDQRRQIL 453
           R+GKVQLINA                          + ++R   G KR+ + +D    I+
Sbjct: 407 RKGKVQLINAAKERAKTGGRGRSGGGESTEEVENVFYAAMRKSLGSKRKELTEDAIDTIV 466

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQ 512
             Y       FS++ DY+ FGYRRI V RPL+++ +  D+  +  L  D  W KL+   Q
Sbjct: 467 KTYGQFVENDFSKIFDYQEFGYRRITVERPLQLAVYPKDELRITALTTDKAWDKLNEHAQ 526

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              L  L  +      Y   + F+K      E  T  VK S + +   +      D  A+
Sbjct: 527 HSILAALASL--NNDKYLSRDVFLKALTTELETATPSVKLSAAQLKLIVKHLSEHDDEAE 584

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
                 G+   + +L + ENVP  ES+ DYF REV PHVP+A+ID    DE+DKE+G VG
Sbjct: 585 VC-KTKGKIEANPDLRDNENVPLTESVDDYFAREVLPHVPNAWIDTKKTDEQDKEVGIVG 643

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           YEI FNR FY+Y P R L +IDA+L  V ++I  LL+E+
Sbjct: 644 YEIPFNRHFYEYVPPRSLTEIDADLDKVSSEIMQLLQEV 682


>gi|146281042|ref|YP_001171195.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas stutzeri A1501]
 gi|145569247|gb|ABP78353.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas stutzeri A1501]
          Length = 658

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/674 (41%), Positives = 396/674 (58%), Gaps = 21/674 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC L PT+  V ++     
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLAPTKEEVVKQTFAQE 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +     ++ AG  F+N S  +L TL  T T  +L SY+ +FS +A+ IFE F F 
Sbjct: 62  GRPDTVREMFLLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQAFSKDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLASANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D      P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVITGQDGKL--QPNSIVTIYDPTAGTGGFLSEGDEYIQS----ISDKVSVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+  +         +I+ G+TLS D   G+RF + LSNPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKGQDV-------ASIKLGNTLSDDQLAGQRFDFMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  +  EH   G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L
Sbjct: 289 GVEWKKVQKQITDEHSHKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LL+NDL+EAIVALPTD+F+ T IATY+WILSN K   R+G
Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQNDLVEAIVALPTDMFYNTGIATYVWILSNHKVAARKG 408

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLI+ +  ++ +R   G KR+ I +DQ  +++ +Y S E    S++    TFGYRRI 
Sbjct: 409 KVQLIDGSQHYSKMRKSLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIETFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F +    + ++  +    KL     S     LK M   +             
Sbjct: 469 VERPLRLNFQICDERIGKVIEEKLILKLGNDAWSLIQAALKSMDSSVLH---RNREQFSK 525

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +         V  S   + A +NA   +DP AD  T   G+   D+ L + ENVP  ES+
Sbjct: 526 LLKKALTAHSVGLSAPELKALLNALSERDPEADICT-TKGQPEADSGLRDNENVPLGESV 584

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA+ID    D +D E+G VG+EI FNR FY +QP R L DID +LK 
Sbjct: 585 FDYFEREVKPHVPDAWIDTSKTDGQDGEVGVVGFEIPFNRHFYVFQPPRSLADIDRDLKA 644

Query: 660 VEAQIATLLEEMAT 673
              +I  ++E ++ 
Sbjct: 645 CTDRIKQMIEGLSA 658


>gi|152988798|ref|YP_001345471.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7]
 gi|150963956|gb|ABR85981.1| N-6 DNA methylase [Pseudomonas aeruginosa PA7]
          Length = 658

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 273/674 (40%), Positives = 395/674 (58%), Gaps = 21/674 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPTR AV  +     
Sbjct: 2   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTREAVIRESYAQE 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +     ++ AG  F+N S+ +L TL  T T  +L SY+ SFS +A+ IFE F F 
Sbjct: 62  GRPDLVRERLLLRAAGQQFFNASKLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L  A LLY++ + F+  +L P+ + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSAANLLYQVVQRFAATDLSPERISNFGMGIIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L++   D   K  P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVITGQDDKLK--PNSIVTIYDPTAGTGGFLSEGDEYIQS----ISQQVTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+  +         +I+ G+TLS D     RF + LSNPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKGQDV-------TSIKLGNTLSDDQLADSRFDFMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +K+  P  GG R  I+L
Sbjct: 289 GVEWKKVQKQITDEHSEKGFNGRFGPGLPRVSDGSLLFLLHLVSKMRDPREGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LL+NDL+EAI+ALPTD+F+ T IATY+W+LSN K   R+G
Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQNDLVEAIIALPTDMFYNTGIATYVWVLSNHKAAARQG 408

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLI+ +  +  +R   G KR+ + ++Q   ++ +Y   E    S++     FGYRRI 
Sbjct: 409 KVQLIDGSQHFAKMRKSLGSKRQYLTEEQIDALVRLYGRFEETAQSKIFPVEAFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F +    + ++  +    KL    +   ++ L+ M   +             
Sbjct: 469 VERPLRLNFQVSSQRIEKVLEEKAIEKLEAPARQRLIEALQAMDASVVH---RNREQFSK 525

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +         V  S   + A ++    +D  AD    V G+   D  L + ENVP  ES+
Sbjct: 526 LLKKTLSAHDVSPSTPELKAILSGLSERDSEADICM-VKGQPEADAGLRDNENVPLGESV 584

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHV DA+ID+   DE+D E+G VG+EI FNR FY +QP R L++ID +LKG
Sbjct: 585 YDYFEREVKPHVADAWIDESKRDEQDGEVGIVGFEIPFNRHFYVFQPPRPLEEIDRDLKG 644

Query: 660 VEAQIATLLEEMAT 673
              +I  ++E ++ 
Sbjct: 645 CTDRIKQMIEGLSA 658


>gi|300113141|ref|YP_003759716.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299539078|gb|ADJ27395.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 662

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/677 (40%), Positives = 393/677 (58%), Gaps = 24/677 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC LEPT++ V ++     
Sbjct: 3   NTENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLEPTKAKVVQQATVHQ 62

Query: 64  GSNIDLESFV---KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                +   +     +G  F+N S  +L TL  T T  +L SY  SFS +A  IFE F+F
Sbjct: 63  HKPDHVREMLLRRAASGLQFFNASPLTLGTLSDTQTAADLMSYAQSFSTDACEIFEHFEF 122

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + + +L  A LLY++ + F+  +L P  + +  M  I+E LIRRF    +E A +  TP
Sbjct: 123 ENFVQQLSSANLLYQVVQRFAATDLSPARISNFGMGIIFEELIRRFAESSNETAGEHFTP 182

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD+VHL T+L++   D     +P  I T+YDPT GTGGFL++   ++            +
Sbjct: 183 RDIVHLTTSLVITGQDDKL--APNRIVTIYDPTAGTGGFLSEGDEYIQS----ISEKVSV 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCLSN 298
             HGQEL PE++A+C A MLI+  +         NI+ G+TLS D       RF + LSN
Sbjct: 237 SLHGQELNPESYAICKADMLIKGQDV-------ANIKLGNTLSNDQLTGPEHRFDFMLSN 289

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K +  +  EHK  G  GRFGPGLP++ DGS+LFL+HL +K+  P +GG R  
Sbjct: 290 PPFGVEWKKVQKQISGEHKHKGFNGRFGPGLPRVPDGSLLFLLHLVSKMRDPRDGGSRIG 349

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR+LL++DL+EAI+ALPTD+F+ T IATY+W+LSN K  E
Sbjct: 350 IILNGSPLFTGGAGSGESEIRRYLLQHDLVEAIIALPTDMFYNTGIATYVWLLSNHKPAE 409

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           RRGKVQLI+ +  +  +R   G KR+ +  +Q  +++ +Y + E    S++     FGYR
Sbjct: 410 RRGKVQLIDGSQHFAKMRKSLGSKRQYVTAEQINELVRLYGAFEETPQSKIFPINAFGYR 469

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           RI V RPLR++F      +  +  +   +KL    +    D L  M        +     
Sbjct: 470 RITVERPLRLNFQASAARIDNVLREKAIQKLDDTARQQLADALGAMD---PSPLYRNREQ 526

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
              +         V  S     A +N  G +DP AD  T   G+  PDT L + ENVP  
Sbjct: 527 FAKLLKKTLTAHGVSLSTPEQKALLNGLGERDPEADICT-TKGKPEPDTGLRDNENVPLG 585

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           ES+ DYF REV PHVPDA+I++   D  D E+G VG+EI FNR FY +QP R L+ ID +
Sbjct: 586 ESVYDYFQREVIPHVPDAWINESKRDALDGEVGIVGFEIPFNRHFYVFQPPRPLEAIDRD 645

Query: 657 LKGVEAQIATLLEEMAT 673
           LK    +I  ++EE++ 
Sbjct: 646 LKACTDRIKQMIEELSA 662


>gi|261212600|ref|ZP_05926884.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|260837665|gb|EEX64342.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
          Length = 679

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/699 (43%), Positives = 417/699 (59%), Gaps = 50/699 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +S+A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+  V  KY 
Sbjct: 1   MTNN--NFSSVAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEATKPEVLAKYE 58

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                 I+   +     A  SFYNTS+  L+ LG T   +NLESYI SFS NA+ IFE F
Sbjct: 59  TVKAMPIEAQDKLLTHAAKLSFYNTSKMDLNRLGETGVASNLESYIQSFSPNAREIFEHF 118

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF +TI +LE+A LLYK+ K F+  +LHPDT+ +  M  ++E LIRRF    +E A +  
Sbjct: 119 DFFNTIDKLEEADLLYKVAKRFASTDLHPDTISNYGMGLVFEELIRRFAESSNETAGEHF 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD+V L T+LL   +D L     G++R++YDPT GTGGFL+  M +V           
Sbjct: 179 TPRDIVELTTSLLFTNEDELTSS--GLVRSIYDPTAGTGGFLSSGMEYVHKLNEKA---- 232

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L   GQEL PE++A+C A MLI+  + D       NI+ G+TLS D     +F Y LSN
Sbjct: 233 SLSAFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDQLRNDKFDYMLSN 285

Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W+K +  +  EH + G  GRFG GLP++SDGS+LFL+HL +K+     GG R  
Sbjct: 286 PPFGVDWKKIQKQINDEHTQKGFEGRFGAGLPRVSDGSLLFLLHLISKMRPVSEGGSRIG 345

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L+ SPLF G AGSGESEIRR++LENDL+EAIVALPTD+F+ T IATY+W+LS+ K   
Sbjct: 346 IILNGSPLFTGGAGSGESEIRRYILENDLLEAIVALPTDMFYNTGIATYIWVLSSHKPAH 405

Query: 418 RRGKVQLINATD-----------------------LWTSIRN-EGKKRRIINDDQRRQIL 453
           R+GKVQLINA+                         + ++R   G KR+ +  D   +I+
Sbjct: 406 RKGKVQLINASKERAKTGGRGRSGGSEVEGDDENVFYAAMRKSLGSKRKELTPDAIDKIV 465

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQ 512
             Y       FS++ DY+ FGYRRI V RPL+++ +  D+  L  L+AD  W K+    Q
Sbjct: 466 QTYGQFAENDFSKIFDYKEFGYRRITVERPLQLAIYPKDELRLEALQADTAWEKMDETTQ 525

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              LD L    Q+   Y   + F+K+     + K  +VK S   +   +   G  D  A+
Sbjct: 526 QAILDALASFEQE--KYLSRDKFLKQL----KTKLAEVKLSAVQLKLIVKHLGEHDDEAE 579

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
                 G+   + +L + ENVP  E++ DYF REV PHVP+A+ID+   D KD E+G VG
Sbjct: 580 VC-KAKGQIEANPDLRDNENVPLTETVADYFAREVLPHVPNAWIDESKTDPKDGEVGIVG 638

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           YEI FNR FY Y+P R L++IDA+L  V A+I  LL+E+
Sbjct: 639 YEIPFNRHFYVYEPPRALEEIDADLDAVSAEIMQLLQEV 677


>gi|73668549|ref|YP_304564.1| type I restriction-modification system methyltransferase subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72395711|gb|AAZ69984.1| type I restriction-modification system methyltransferase subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 680

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/692 (39%), Positives = 393/692 (56%), Gaps = 33/692 (4%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  F        +FIW  A++ L  DFK  ++  VILPFT+LRRL+C L PT+  V E  
Sbjct: 1   MNNFQEKT----SFIWSVADEVLRDDFKRGEYPDVILPFTVLRRLDCVLAPTKDKVLEYD 56

Query: 60  LAFGGS-NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
               G       +    +GYSFYNTS Y    L    T+   NL +YI  FS+N + + +
Sbjct: 57  KKLEGKIENKNGALRHASGYSFYNTSPYDFEKLLAAPTSIGQNLRAYINGFSENMREVID 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F    TI  LE+ GLL+ + + F+ ++LHPD V +  M  I+E LIR+F  + +E   +
Sbjct: 117 KFKLWGTIDTLEEKGLLFLLIQKFANVDLHPDAVSNHEMGYIFEELIRKFNEQTNENPGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L   LLL  D     ++  ++RT+YDP CGTGG LT A  H+ D       
Sbjct: 177 HFTPREVIRLMVNLLLSQDQEKLAQN-HIVRTVYDPACGTGGMLTIAKEHILDH---INP 232

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +   GQE+  +T A+  + MLI+  + D     + NI+  S+ SKD   G+ F Y L
Sbjct: 233 NANIKLFGQEVNDKTFAISKSDMLIKGDDKD-----ADNIKPDSSFSKDGHAGETFDYIL 287

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPP+GK W+K++D +EKE K G  GRFG GLP+ SDG ++F+ H+ +K++    GG R 
Sbjct: 288 SNPPYGKDWKKEEDFIEKEAKKGYEGRFGAGLPRKSDGQLIFVQHMISKMKPTEEGGSRI 347

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV++ SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T I TY+WI++NRK E
Sbjct: 348 AIVMNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPNQLFYNTGINTYIWIITNRKDE 407

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +RRGKVQLINA D +  +R   G KR  I+  Q  +I  ++   +  +F ++ D   FGY
Sbjct: 408 QRRGKVQLINAADFYVKMRKSLGDKRNEISPSQIEEITKLHTDFKENEFVKIFDDEAFGY 467

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL---------------DILK 520
           R+I V RPLR++F      + RL+    ++KL+   +   L               +I+ 
Sbjct: 468 RKITVERPLRLNFQASPERITRLKEQSAFQKLAVSKKKKDLQEKAREEAEGRKVREEIIN 527

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
            +        + +    E   +   K   +K + +   +   A    D  A+   D  G 
Sbjct: 528 ALSGMDANVFYTDREQFEKDLNAALKKADLKPATAVKKSIFEALSESDENAETCKDKKGN 587

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
              D+ L + ENVP  E I  YF REV PHVPDA+ID+   D KD ++G+VGYEINFNR+
Sbjct: 588 NEADSQLKDTENVPLKEDIYTYFEREVKPHVPDAWIDETTRDPKDGKVGKVGYEINFNRY 647

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           FY+Y+P R L+DI+A++  +E +I  LL EMA
Sbjct: 648 FYKYEPPRALEDIEADINKLENEILELLREMA 679


>gi|254491699|ref|ZP_05104878.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010]
 gi|224463177|gb|EEF79447.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010]
          Length = 653

 Score =  769 bits (1986), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/679 (40%), Positives = 401/679 (59%), Gaps = 36/679 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M  F+ S     +FIW  A+ L G+FK +++G+VILPFT+LRRL+C LE ++  V  K  
Sbjct: 1   MENFSTS----VSFIWSIADILRGNFKQSEYGRVILPFTVLRRLDCVLEASKGDVLNKLK 56

Query: 61  AFGGS---NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF 115
           +   +    +        AG +F+NTS Y+   L     N   NL  +I  FSD+A+ IF
Sbjct: 57  SLSDNVDHTMRETMLNMAAGQNFHNTSPYTFQKLLDDPDNIAANLSHFINGFSDDAREIF 116

Query: 116 -EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            + F     I RL+K  LLY +   F+  +LHPD V +  M  ++E LIRRF  + +E A
Sbjct: 117 IDRFKLPEQITRLDKDNLLYLVVSKFAQADLHPDAVSNLQMGYMFEELIRRFSEQSNETA 176

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   LL   D  +    PG+IR L+DP CGTGG L+ A +++ +     
Sbjct: 177 GEHFTPREVIRLMVDLLFYEDADVLT-KPGIIRKLFDPACGTGGMLSIAEDYLRELNPDA 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +      +GQEL  E++ +C + M+I+          +KNI  G++ S+D    ++F Y
Sbjct: 236 HLE----VYGQELNDESYGICKSDMIIKGQN-------AKNIHPGNSFSEDGLEDEQFDY 284

Query: 295 CLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K + A+++E +  G  GRFG GLP++SDGS+LF+ H+ +K     +  
Sbjct: 285 MLSNPPFGVEWKKVEKAIKEEANTLGLKGRFGAGLPRVSDGSLLFVQHMISKFNRNGDP- 343

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R A+VL+ SPLF G AGSGESEIRRW++END +EAIVALPTD+F+ T IATY+WI++N+
Sbjct: 344 SRLAVVLNGSPLFTGSAGSGESEIRRWIIENDWLEAIVALPTDMFYNTGIATYIWIITNK 403

Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K  +R+GKVQLINATD  + +R   G KR+ I  +Q + I +++ + E  + S++ D   
Sbjct: 404 KKPQRKGKVQLINATDFHSPMRKSLGSKRKQIAPEQIKTIAELFGNFEESEQSKIFDNSD 463

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           FGY+RI V RPL+++F +D+  L  L  +  + KL    Q   +  L+ +  +   Y   
Sbjct: 464 FGYQRITVERPLKLNFNVDEERLELLRDNKAFSKLDKTDQQTIITALETLPGR-GLYLNR 522

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
           ++FVK+       K+ +VKA        ++A   +D  AD  T+  G+  PD+ L +YEN
Sbjct: 523 DTFVKD--MDKALKSAQVKAGAPLKKVILSALSERDENADVCTNNKGKPEPDSELRDYEN 580

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP  E I  YF REV PHVPDA+ID            +VG+EI FNR FYQY P R L++
Sbjct: 581 VPLKEDIDTYFQREVIPHVPDAWIDYDK--------TKVGFEIPFNRHFYQYVPPRPLEE 632

Query: 653 IDAELKGVEAQIATLLEEM 671
           IDAEL  V A+I  LL E+
Sbjct: 633 IDAELDAVTAEILELLREV 651


>gi|126664814|ref|ZP_01735798.1| N-6 DNA methylase [Marinobacter sp. ELB17]
 gi|126631140|gb|EBA01754.1| N-6 DNA methylase [Marinobacter sp. ELB17]
          Length = 658

 Score =  764 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/674 (40%), Positives = 400/674 (59%), Gaps = 21/674 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLA 61
              + + +A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEPT+  V    +   
Sbjct: 2   NAENNSQIAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPTKDQVLVGARAHV 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +  +  ++ A  +F+N S  SL +L  T T ++L SY+ SFS +A+ IFE F F 
Sbjct: 62  DKPDAVREKLLLREAEQTFFNASPLSLGSLSDTQTADDLMSYVQSFSQDAREIFEHFHFE 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             + +L    LLY++ + F+ I+L+P  + +  M  I+E LIR+F    +E A +  TPR
Sbjct: 122 DFVQQLSANNLLYQVVQRFASIDLNPKRISNFGMGLIFEELIRKFAESSNETAGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+VHL T+L+L   +      P  I T+YDPT GTGGFL++   ++            + 
Sbjct: 182 DIVHLTTSLVLTGQEHKL--QPNSIVTIYDPTAGTGGFLSEGDEYIQQVSD----KVTVS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HGQEL PE++A+C A MLI+  +        + I+ G+TLS D     +    LSNPPF
Sbjct: 236 LHGQELNPESYAICKADMLIKGQKV-------EQIKLGNTLSDDQLYDLKADIMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L
Sbjct: 289 GVEWKKVQKQVTDEHKFKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR+LL++D++EAIVALPTD+F+ T I+TY+WILSN K  ER+G
Sbjct: 349 NGSPLFTGGAGSGESEIRRYLLQSDMVEAIVALPTDMFYNTGISTYIWILSNNKPTERKG 408

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           KVQLI+A+D  + +R   G KR+++++  + +I+ +Y   +  + S++     FGYRRI 
Sbjct: 409 KVQLIDASDRASKMRKSLGSKRQLVSETDQDEIVRLYGEFQETEKSKIFPNDAFGYRRIT 468

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V RPLR++F      +AR+  +   +KL    Q   L   + +        +      + 
Sbjct: 469 VERPLRLNFQTSDERIARITEEKAIQKLEEEEQEKILAACRAIDSNT---LYQNRPRFQK 525

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +        +V      + A +NA   +DP AD   +  G   PD  L + ENVP  ES+
Sbjct: 526 LLKAALTNHQVYPGTPQLKALMNALSERDPEADIC-ESKGNPEPDGGLRDNENVPLGESV 584

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF REV PHVPDA+ID+   DE+D E+G VG+EI FNR FY + P R L +IDA+LK 
Sbjct: 585 YDYFKREVIPHVPDAWIDESKTDEQDGEVGIVGFEIPFNRHFYVFTPPRPLDEIDADLKQ 644

Query: 660 VEAQIATLLEEMAT 673
              +I  ++E ++ 
Sbjct: 645 CTDRIKQMIEGLSA 658


>gi|298674424|ref|YP_003726174.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287412|gb|ADI73378.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 679

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/687 (38%), Positives = 402/687 (58%), Gaps = 30/687 (4%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +    ANFIW  A++ L  DFK   +  VILPFT+LRR+EC LEPT+  V + Y     
Sbjct: 2   SNFQEKANFIWSVADEVLRDDFKRGKYRDVILPFTVLRRVECVLEPTKDNVIQTYENVKD 61

Query: 65  S-NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                  +    AG+SFYNTS Y L  L    +N   N +SYI SFS+N + IF+ F   
Sbjct: 62  KVKDPHNALCHAAGHSFYNTSPYDLKKLLDDPSNIGQNFKSYINSFSENMRDIFDKFYLW 121

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + I +L +  LLY + + FS ++LHPD+V +  M  I+E LIRRF  +V+E   +  TPR
Sbjct: 122 NYIDQLIEDNLLYMLLEKFSNVDLHPDSVSNHEMGYIFEELIRRFNEDVNENPGEHFTPR 181

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   L+   D+A    +   IRT+YDP CGTGG LT A +H+            + 
Sbjct: 182 EVIRLMVNLIFYQDEAKLGHNT-PIRTIYDPACGTGGMLTIANDHIL---KEINSNADIW 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE+ PET A+  + M+++  + D     ++NI+ GS  S D    + F+Y LSNPPF
Sbjct: 238 LFGQEVNPETFAIAKSDMMLKGNDRD-----AENIKMGSVFSNDGHPNETFNYMLSNPPF 292

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           GK W+K+++ + +E K+    RF  GLP+  DG +LFL H+ +K++ P +GG R A+V +
Sbjct: 293 GKDWKKEQNFILEEAKSA-SSRFTAGLPRKDDGQLLFLQHMISKMKRPEDGGSRIAVVTN 351

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T I TY+WI++NRK + R+GK
Sbjct: 352 GSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGINTYVWIVTNRKEDHRKGK 411

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +QL++A + +  +R   G+KR  I+ +Q   I +++ +   G++S++ D   FGYR+I +
Sbjct: 412 IQLVDARECYQKMRKSLGEKRHEISSEQIDTITNLHNNFNEGQYSQIFDNHEFGYRKITI 471

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLS---------------PLHQSFWLDILKPMMQQ 525
            +PLR+SF +    + +L+    ++ L+                  Q     I++ + + 
Sbjct: 472 EQPLRLSFQVTPERIEQLKEQKAFKNLAVSKKRKNTEEKEKEEAEGQKLQDSIIEMLSEM 531

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
                +        + ++  K   +  + +   A +++   +D  AD   D    W PD+
Sbjct: 532 DSEKFYKNRDEFWKVLNDNLKKHGININNTVEKAILDSMSERDETADICVDSKKRWEPDS 591

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
            L +YENVP  E I DYF REV PHVP+A+ID+   D+ D ++G+VGY INFNR+FY+Y+
Sbjct: 592 QLRDYENVPLDEDIYDYFEREVKPHVPEAWIDESKTDQYDNDVGKVGYIINFNRYFYEYE 651

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMA 672
           P R L++I++++  +E +I  LL+E++
Sbjct: 652 PPRPLEEIESDINDLENEILELLQEVS 678


>gi|257061734|ref|YP_003139622.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
 gi|256591900|gb|ACV02787.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
          Length = 676

 Score =  758 bits (1958), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/683 (39%), Positives = 393/683 (57%), Gaps = 27/683 (3%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  + G 
Sbjct: 2   QNFGEKVSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61

Query: 66  NIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +L+    K +G++FYN S Y    L     +   NL+ YI SFS N + + E FDF +
Sbjct: 62  LENLDPILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           TI +LE+A LL+++ + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+
Sbjct: 122 TIDKLEEADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L  +LLL  D    K++  + RT+YDP CG+GG LT A   + +   +  +      
Sbjct: 182 VIRLMVSLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPNATVF----L 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PET A+C + + ++  +       + NI+ GSTLS D  + K F Y L+NPP+G
Sbjct: 237 FGQEVNPETFAICKSDLYMKSED----GKDADNIKFGSTLSNDQHSDKSFDYLLANPPYG 292

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K W++DKDAVE E +     RF  G P+ISDG +LFL  +  +++ P NGG R AIV++ 
Sbjct: 293 KDWKRDKDAVETEAQKTG-SRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNG 351

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRRW+LEND +EAI+ALP  LF+ T I+TY+WILSN+K  +++ KV
Sbjct: 352 SPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKV 411

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLIN +D W ++R   G KRR I+ +   +I  I+   E  + S+  +   FGYR+I + 
Sbjct: 412 QLINGSDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIE 471

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYP 528
           RPLR++F +    + R++    +  L+   +                  ++  ++  +  
Sbjct: 472 RPLRLNFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSD 531

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
             + +    E +     K   V    +   A +     KD  A+   D +G   PDT L 
Sbjct: 532 ELYKDRNPFELLLKKAFKVENVAVKGALFKAILTGLSEKDETAEICRDKDGNPEPDTELR 591

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP  E I DYF REV PHV DA+I++   D KD  +G+VGYEINFNR+FYQYQP R
Sbjct: 592 DTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQPPR 651

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
           +L +I+ +++ VE  I  +L+EM
Sbjct: 652 ELSEIEKDIQQVEGAILAMLKEM 674


>gi|218248664|ref|YP_002374035.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218169142|gb|ACK67879.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 676

 Score =  757 bits (1954), Expect = 0.0,   Method: Composition-based stats.
 Identities = 269/683 (39%), Positives = 394/683 (57%), Gaps = 27/683 (3%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     +FIW  A+ +   FK   +  VILPFT+LRRL+C LEPT+  V E Y  + G 
Sbjct: 2   QNFGEKVSFIWSVADLIRDSFKRGKYQDVILPFTVLRRLDCVLEPTKEQVLEAYHKYHGK 61

Query: 66  NIDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +L+    K +G++FYN S Y    L     +   NL+ YI SFS N + + E FDF +
Sbjct: 62  LENLDPILCKQSGFAFYNASNYDFGKLIDDPKDLGANLKKYINSFSSNMREVLEKFDFPN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           TI +LE+A LL+++ + F  I+LHPD V +  M  I+E LIR+F   + E   +  TPR+
Sbjct: 122 TIDKLEEADLLFQVMEKFKTIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L  +LLL  D    K++  + RT+YDP CG+GG LT A   + +   +  +      
Sbjct: 182 VIRLMVSLLLSQDKDSLKQA-HITRTIYDPCCGSGGMLTIAKERILELNPNATVF----L 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PET A+C + + ++  +       + NI+ GSTLS D  + K F Y L+NPP+G
Sbjct: 237 FGQEVNPETFAICKSDLYMKSED----GKDADNIKFGSTLSNDQHSDKSFDYLLANPPYG 292

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K W++DKDAVE E +     RF  G P+ISDG +LFL  +  +++ P NGG R AIV++ 
Sbjct: 293 KDWKRDKDAVETEAQKTG-SRFSAGTPRISDGQLLFLQQMLARMKSPENGGSRVAIVMNG 351

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRRW+LEND +EAI+ALP  LF+ T I+TY+WILSN+K  +++ KV
Sbjct: 352 SPLFTGDAGSGESEIRRWILENDWLEAIIALPEQLFYNTGISTYIWILSNKKLLQKKEKV 411

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLIN +D W ++R   G KRR I+ +   +I  I+   E  + S+  +   FGYR+I + 
Sbjct: 412 QLINGSDFWVAMRKSLGDKRREISTEHIEKITAIFQDFEVSEVSKTFNSTDFGYRKITIE 471

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYP 528
           RPLR++F +    + R++    +  L+   +                  ++  ++  +  
Sbjct: 472 RPLRLNFQVIPERIERVKEQTAFINLAVSKKKNPEMRKIEEDAGREQQKLILGVLNGLSD 531

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
             + +    E +     K   V    +   A +     KD  A+   D +G   PDT L 
Sbjct: 532 ELYKDRKPLELLLKKAFKVENVAVKGALFKAILTGLSEKDETAEICRDKDGNPEPDTELR 591

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + ENVP  E I DYF REV PHV DA+I++   D KD  +G+VGYEINFNR+FYQYQP R
Sbjct: 592 DTENVPLDEDIYDYFEREVKPHVSDAWINETVRDSKDSGVGKVGYEINFNRYFYQYQPPR 651

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
           +L +I+ +++ VE +I  +L+EM
Sbjct: 652 ELSEIEKDIQQVEGEILAMLKEM 674


>gi|56459751|ref|YP_155032.1| Type I restriction-modification system methyltransferase subunit
           [Idiomarina loihiensis L2TR]
 gi|56178761|gb|AAV81483.1| Type I restriction-modification system methyltransferase subunit
           [Idiomarina loihiensis L2TR]
          Length = 660

 Score =  756 bits (1953), Expect = 0.0,   Method: Composition-based stats.
 Identities = 276/675 (40%), Positives = 403/675 (59%), Gaps = 21/675 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF- 62
            T + +  A+FIW  A+ L G FK + +G+VILPFTLLRRLEC L P +  V E      
Sbjct: 2   NTENYSQTASFIWSVADLLRGHFKQSQYGRVILPFTLLRRLECVLAPNKQKVLEAAKQHQ 61

Query: 63  -GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +  +  ++ +   FYN S  +L+TL  T T  +L SY+ SFS +A+ IFE F+F 
Sbjct: 62  NKPDAVREQLLLRESQNDFYNASSLTLATLSDTQTAEDLISYVQSFSSSAREIFEHFNFE 121

Query: 122 STIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             + +L +A LLY+I + F S I+L  D + +  M  I+E LIR+F    +E A +  TP
Sbjct: 122 EFVLKLAEADLLYQITQQFGSKIDLSTDNISNYGMGLIFEELIRKFAESSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD VH AT+LL+   + +    P  I T+YDPT GTGGFL+++  ++            +
Sbjct: 182 RDCVHAATSLLMTGQEEVLS--PNSIITIYDPTAGTGGFLSESEEYIQS----ISEKVTV 235

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL  E++A+C A M+I+  E D       NI+ G+TLS D    ++F Y L+NPP
Sbjct: 236 KLFGQELNSESYAICKADMMIKSQEVD-------NIKLGNTLSNDQLAHEKFKYMLANPP 288

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG  W+  +  V  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    NGG R  I+
Sbjct: 289 FGVDWKASQRVVNDEHKVKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDTRNGGSRIGII 348

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR+LL+NDL+EAIVALP+D+FF T I+TY+WILSN K  ER+
Sbjct: 349 LNGSPLFTGSAGSGESEIRRYLLQNDLVEAIVALPSDMFFNTGISTYIWILSNAKKPERK 408

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+ +D +  +R   G KR+ + ++   +++ +Y + E  K S++     FGYRR+
Sbjct: 409 GKLQLIDGSDAFAKMRKSLGSKRKYLTEENINELVRLYGAVEETKNSKVFPNEAFGYRRV 468

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            + RPLR++F   +  +ARL+ +   +KL     S     ++ +          +     
Sbjct: 469 TIERPLRLNFQASEERVARLDDEKALQKLKAEDFSQLKQAIQQIDADTLFINRDD---FT 525

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
              + + K   +  + + + A +NA   +D  AD   D  G    D+ L +YENVP  + 
Sbjct: 526 RTLNAQLKVSDLNLTAAQLKAVLNALSERDSDADVCADKKGNPEADSGLRDYENVPLTDD 585

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I +YF R+V PHVPDA+ID+   DE+D EIG VG+EI FNR FY ++P R L++IDA+LK
Sbjct: 586 IYEYFERDVKPHVPDAWIDESKRDEQDGEIGIVGFEIPFNRHFYVFEPPRPLEEIDADLK 645

Query: 659 GVEAQIATLLEEMAT 673
               +I  ++EE++ 
Sbjct: 646 QCTDKIKQMIEELSA 660


>gi|188585425|ref|YP_001916970.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350112|gb|ACB84382.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 673

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/689 (38%), Positives = 393/689 (57%), Gaps = 40/689 (5%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              S     NFIW  A+ L GD+K +D+GKVILPFT+L+RL+CAL+PT++ V E+Y    
Sbjct: 2   NIASFQEKVNFIWSIADLLRGDYKRSDYGKVILPFTVLKRLDCALKPTKNKVLEEYKMLK 61

Query: 64  GSNI--DLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFD 119
            S I         + G  F+NTS++    +     N  +NL  YI  FS NA+ I E F+
Sbjct: 62  DSGIQNPEPVLNDITGQHFHNTSQFDFEKMKNEPDNIGDNLRHYINGFSTNARDIIEYFN 121

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F   + RLE++ LLY I   FS I+L P+ V +  M  I+E LIR+F  + +E A +  T
Sbjct: 122 FHDHLERLEQSNLLYLIVSRFSEIDLSPEKVSNLEMGYIFEELIRKFSEQSNETAGEHFT 181

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   LL + D  L  +  G++RT+YDP CGTGG L+ A +++ +  +  K+   
Sbjct: 182 PREVIRLMVNLLFNEDSDLL-QKEGLLRTIYDPACGTGGMLSVARDYLRELNNDAKLE-- 238

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               GQEL PE++A+C A M+I+ L+ D       NI+ G++ + D F+   F Y LSNP
Sbjct: 239 --MFGQELNPESYAICKADMMIKGLDPD-------NIKFGNSFTNDGFSDNTFDYMLSNP 289

Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG +W+K +  +++EH+N G  GR+G GLP+I+DGS+LFL H+ +K++   NGG R AI
Sbjct: 290 PFGVEWKKIEKEIKEEHENLGFSGRYGAGLPRINDGSILFLQHMISKMQHQ-NGGSRIAI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL+ SPLF G AG GES IR+W++ENDL+EAIVALP  LF+ T I TY+W+L+NRK   R
Sbjct: 349 VLNGSPLFTGDAGQGESNIRKWIIENDLLEAIVALPEQLFYNTGINTYVWVLTNRKRPWR 408

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GK+QLINA + +  +R   G+KR  I+ +Q  +I  IY   + G++S++ D   FGY +
Sbjct: 409 KGKIQLINAVEFYKKMRKSLGEKRHEISPEQIDKISKIYGEFKEGEYSKIFDNEDFGYYK 468

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD-------------ILKPMMQ 524
           I V RPLR++F      + RL+    ++ L+   +                   +  +++
Sbjct: 469 ITVERPLRLNFQASDERIERLKEQRAFQNLAKSKKKDPAKKEEEINEGEEQQEAIINVLK 528

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
            +    +        I     K   +K   S   A + A   +D  A+  TD  G   PD
Sbjct: 529 SMDETVYKNREEFTKILDEALKDAGIKLKASLKKAVLKALSEQDETAEICTDSKGNPEPD 588

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
            +L + E V   + I  YF REV PHVPDA+I        D+   ++GYEI F R FY+Y
Sbjct: 589 PDLRDNEIVSLKDDINGYFEREVKPHVPDAWI--------DESKTKIGYEIPFTRHFYKY 640

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +P R+ + I  E+  +E  I   L+++  
Sbjct: 641 EPPREPEVIMEEIIELEHDIKEELKKVIG 669


>gi|146280648|ref|YP_001170801.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145568853|gb|ABP77959.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 639

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/670 (45%), Positives = 418/670 (62%), Gaps = 35/670 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +LA FIW  A+ L G FK +++G++ILPFT+LRRLEC LEPTR  VR ++ +   S 
Sbjct: 2   NQQTLAPFIWNIADLLLGAFKPSEYGRIILPFTVLRRLECVLEPTRDKVRSQFESMKASG 61

Query: 67  IDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +D++  +   AG +FYN S++SL ++GST+TR NLE YIA FS NA+ +FE F F + +A
Sbjct: 62  VDMDLILPTTAGATFYNVSQFSLGSVGSTSTRANLEDYIAKFSANARQVFEHFAFDTWLA 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +LE   LLY + + F+ ++LHPD + +  M  ++EHLIR+F    ++ A  + TPRDVV 
Sbjct: 122 KLENRNLLYLVTQKFAAVDLHPDKISNHEMGLVFEHLIRKFAESSNDDAGQYFTPRDVVR 181

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           LAT L+  PD        G++RT+YD   GTGGFL+ A+  V +   + ++    VP+ Q
Sbjct: 182 LATTLVFAPDHQAL-NGEGVVRTVYDCAAGTGGFLSSAIEQVYEWNPNARL----VPYAQ 236

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL PET+A+ VA  LI+  +       ++NI+ G+TLS D    ++F YCL+NPPFG KW
Sbjct: 237 ELNPETYAISVADKLIQGYD-------TRNIKLGNTLSDDHLPHEQFDYCLANPPFGVKW 289

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           E  +  V+ EH + G  GRFG GLP++ DGS+LFLMHL +K +    GG R  IVLS SP
Sbjct: 290 ENVQKQVQAEHSQQGFAGRFGAGLPRVGDGSLLFLMHLLSKRKPVELGGSRIGIVLSGSP 349

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+LSN K   R+GKVQL
Sbjct: 350 LFNGGAGSGESEIRRWILENDWLEAIIALPTDLFYNTGIGTYIWVLSNHKDALRKGKVQL 409

Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           I+A+ +   +R   G KR+ ++D+Q  +I  ++ + E G  S++     FGYRRI V RP
Sbjct: 410 IDASAMHAPMRKSLGSKRKYLSDEQIAEIAKLHEAFEEGPNSKIFATTDFGYRRITVERP 469

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
           LR+ F +    L   +                 D  +        Y    +F+K +    
Sbjct: 470 LRLRFSITPERLKIYQDIKG------------ADQAEAFATVRGEYDNLSAFLKAAGIK- 516

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
                  K  K  + A ++ FG +D  A PV D  G    D++L E+ENVP  ++I DYF
Sbjct: 517 -------KLGKGALKAALSCFGERDANAQPVLDDKGNQQADSDLREFENVPLNQNIDDYF 569

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            REV PHVPDA+ID    D KD ++G VGYEINFNR+FY YQP R L +IDA+LK VEA+
Sbjct: 570 AREVLPHVPDAWIDTGKTDAKDGQVGIVGYEINFNRYFYVYQPPRPLAEIDADLKAVEAE 629

Query: 664 IATLLEEMAT 673
           IA LL E+  
Sbjct: 630 IAALLGEVTA 639


>gi|310830281|ref|YP_003965381.1| type I restriction-modification system DNA methylase, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308753187|gb|ADO44330.1| type I restriction-modification system DNA methylase, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 673

 Score =  745 bits (1923), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/676 (60%), Positives = 499/676 (73%), Gaps = 6/676 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E      SLA+FIWKNA+DLWG+FKH +FGK+ILPFTLLRRLEC LEPTR  VRE   
Sbjct: 1   MSETQVKNTSLADFIWKNADDLWGNFKHVEFGKIILPFTLLRRLECVLEPTREQVRETVK 60

Query: 61  AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           +   S IDL+  ++   G+ FYNTS YSL++LG+T TR NLE YIA FS+NA+ IFE FD
Sbjct: 61  SLKDSGIDLDVILRQQTGFPFYNTSNYSLASLGATRTRQNLEDYIAQFSENARVIFEQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++TIAR+++AG+LYKIC NFS I+LHPD VP+RVMSN+YEHLIRRFG+EV+E AEDFMT
Sbjct: 121 FANTIARMDRAGVLYKICLNFSAIDLHPDAVPERVMSNVYEHLIRRFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV      + I P+
Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRSLQDRYSIAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +VP+GQELEPETHAVC+AGML++ LESDP RDLSKNI+ GSTLS D   G++FHYC+SNP
Sbjct: 241 IVPYGQELEPETHAVCLAGMLLKTLESDPGRDLSKNIKLGSTLSADKHRGEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWE D DAV +EH + G  GRFGP LP++SDGSMLFL+HL +KLE P  GGGRAAI
Sbjct: 301 PFGKKWEMDADAVTREHLEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLEDPIKGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS SPLFNG AG GESEIRR+LLE D++EAI+ALPT++FFRT I TY+WILSN+K + R
Sbjct: 361 VLSGSPLFNGNAGQGESEIRRYLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNKKPKHR 420

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +G VQLINAT L+  +R   G KRR + +DQ  +I+ +Y      K S +L    FGYRR
Sbjct: 421 KGMVQLINATGLYEPMRKSEGNKRRRVGEDQTAEIVRMYSEFVQTKESLILQATDFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I+VLRPLR   I+ + G+A L  +  W K S   Q+ WL + +  + +   + W ESF K
Sbjct: 481 IRVLRPLRKKMIISEEGIAALADEKAWEKRSAGQQAGWLGLFRENLGRTESWHWIESFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
            + K ++      K     I AF  AF   DP  DPVTD  G  IPD +LT+YENVP   
Sbjct: 541 NAAKCDDDLG---KVDVGLIKAFQKAFAVHDPDMDPVTDKKGNVIPDDDLTDYENVPLTT 597

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I DY   EV PH  DAYID+ + DE D +IG VGYEINFNR FY+YQP RKL+DIDAEL
Sbjct: 598 DIHDYLASEVLPHAEDAYIDETYRDETDGDIGIVGYEINFNRHFYEYQPPRKLEDIDAEL 657

Query: 658 KGVEAQIATLLEEMAT 673
           K VEA+IA +L E+  
Sbjct: 658 KAVEAEIAGMLAEVTA 673


>gi|307720088|ref|YP_003891228.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978181|gb|ADN08216.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
          Length = 652

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/669 (43%), Positives = 412/669 (61%), Gaps = 26/669 (3%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            S++  IW  A+ L GD+K +D+GK+ILPFTLLRRLEC LEPTR  V  +  A     I 
Sbjct: 4   QSISALIWSTADLLRGDYKQSDYGKIILPFTLLRRLECVLEPTRDDVLTENEARKNLGIP 63

Query: 69  LESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +E F+ + +G+SFYNTS+Y+L+ L    +N   NLESYI  FS NA+ IFE ++F++ I 
Sbjct: 64  MEQFLTRKSGHSFYNTSKYTLTKLMSDPSNISQNLESYINDFSPNAREIFEKYEFTAQID 123

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L +A LLY I + F+ ++LHPDT+ +  M  ++E LIR+F  + +E A +  TPRD+V 
Sbjct: 124 KLNEANLLYLIIEKFATVDLHPDTISNHAMGIVFEELIRKFAEQSNETAGEHFTPRDIVR 183

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T+LL   DD +     G++R+LYDPT GTGGFL+    +V +          LV  GQ
Sbjct: 184 LTTSLLFSTDDDVLT-KKGIVRSLYDPTAGTGGFLSSGSEYVHELNPDA----TLVTFGQ 238

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E++A+C A M+I+ +         +NI+ G+TLS D     +F Y LSNPPFG +W
Sbjct: 239 ELNGESYAICKADMMIKGV-------QVENIKHGNTLSDDQLGENKFDYMLSNPPFGVEW 291

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V+ E+ + G  GRFGPGLP++SDGS+LFL+HL +K+     GG R  I+L+ SP
Sbjct: 292 KKVEKVVKAENAEQGYNGRFGPGLPRVSDGSLLFLLHLVSKMRPKREGGSRIGIILNGSP 351

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LEND +EAIVA+P D+FF T IATY+WILSN K E R+G+VQL
Sbjct: 352 LFTGGAGSGESEIRRYILENDYLEAIVAMPNDMFFNTGIATYIWILSNNKPEHRQGEVQL 411

Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA+ +  ++R   G KR+ +++ Q   I+ IY      K S++ +   FGYRRI V R 
Sbjct: 412 INASSMGNAMRKSLGSKRKFLDETQISDIVRIYGENAAAKISKIFNITDFGYRRITVERS 471

Query: 484 LRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L++S F  D   L  L+ D  + K+  L           ++  +      +   +   K+
Sbjct: 472 LQLSYFPHDADKLESLQNDKVFVKMKEL--------GAEILTALGAIESDKIMSRTEFKN 523

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
             +K +  K S +            D  A+   D  G+   + +L +YEN+P  E I +Y
Sbjct: 524 ELSKKMTSKLSATQFKLVQKHISMHDDEAELCKDSKGKLEANADLRDYENIPLSEDINEY 583

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F REV+PHVP A+ID+   D KD E+G VGYEI FNR FY+Y P R L++IDAEL+ + A
Sbjct: 584 FAREVTPHVPLAWIDEKKRDAKDGEVGIVGYEIPFNRHFYEYAPPRPLEEIDAELETLNA 643

Query: 663 QIATLLEEM 671
           +I  +L E+
Sbjct: 644 EIMEMLREI 652


>gi|329937002|ref|ZP_08286631.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces griseoaurantiacus M045]
 gi|329303609|gb|EGG47494.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces griseoaurantiacus M045]
          Length = 663

 Score =  743 bits (1919), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/688 (39%), Positives = 396/688 (57%), Gaps = 46/688 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +     LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC LEPTR AV E    F 
Sbjct: 2   NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLEPTRDAVTETVERFA 61

Query: 64  GSNIDLESFVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDF 120
           G +I+ + F++  AG++FYNTS  +L  + +   +   NL+ Y+ASFSDNA+ + + F+F
Sbjct: 62  GQDINADKFLRKAAGHAFYNTSSLTLKKIAADPGSAAKNLQVYVASFSDNARGVLDRFEF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  + RL+ AGLLYKI   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TP
Sbjct: 122 AQQVKRLDSAGLLYKIIGKFTDLDLRPEVVSNHNMGYIFEELIRRFSEQSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LL+ PD    +  PG++RT+ DP CGTGG L+   + + +      +    
Sbjct: 182 REVIQLMVRLLVAPDGDALQL-PGVVRTVMDPACGTGGMLSATDDLIKELNPDATVE--- 237

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL PE+ A+C + ++I+           +NI  G++ + D    + F Y L+NPP
Sbjct: 238 -VYGQELNPESWAICRSDLMIKGQNP-------ENIAFGNSFNDDGHARRTFDYLLANPP 289

Query: 301 FGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL---PPNGGGRA 356
           FG +W+K K+ VE+EH K G  GRFG GLP+I+DGS+LFL H+ +K++       GG R 
Sbjct: 290 FGVEWKKVKEDVEEEHEKLGSAGRFGAGLPRINDGSLLFLQHMISKMKPVDVNGGGGSRI 349

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV + SPLF G AGSGESEIRRW+LEND +E IVALP  LF+ T I+TY WIL+NRK+ 
Sbjct: 350 AIVFNGSPLFTGAAGSGESEIRRWILENDWLEGIVALPDQLFYNTGISTYFWILTNRKSP 409

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYV----SRENGKF-----SR 466
           + +GKV L++A D W  +R   G KR+ +  D    ++ +Y     + ++ +       +
Sbjct: 410 DHKGKVVLLDARDQWQKMRKSLGDKRKELGKDHIATVVKLYGEALSAAQDAEHPLHAKVK 469

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           + D   FGY+RI V RPL++ F + +  LA LEA    +KL          ++      +
Sbjct: 470 VFDNTAFGYQRITVERPLKLRFEVTEETLAALEASKAIQKL------PQASVMLEAFASL 523

Query: 527 YPYGWAESFVKESIKSNEA--KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
              GW++         +              F  A   A G +DP  +    V G+   D
Sbjct: 524 KGSGWSKKTDAWLALKDAVVQAGSTWPTGAPFNKALREAIGVRDPEGEVQL-VKGKPEAD 582

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
             L +YENVP  E +++Y  REV PHVPDA+ID            ++GYEI F R FY Y
Sbjct: 583 AELRDYENVPLGEDVEEYLEREVHPHVPDAWIDH--------SKTKIGYEIPFTRHFYVY 634

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +P R L +IDAELK +EA+I  LL E+ 
Sbjct: 635 KPPRPLAEIDAELKLLEAEIQGLLGEVT 662


>gi|332800155|ref|YP_004461654.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
 gi|332697890|gb|AEE92347.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
          Length = 672

 Score =  743 bits (1918), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/699 (37%), Positives = 379/699 (54%), Gaps = 52/699 (7%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT F        NFIW  AE L G +K   +G VILP  +LRR +C L  T+  V + Y 
Sbjct: 1   MTNFQDK----VNFIWTIAELLRGPYKKEQYGDVILPMAVLRRFDCVLAETKEEVLKAYE 56

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
           A   + +        K++   F NTS+Y    L     N  +NL +Y+  FS NA+ I E
Sbjct: 57  ALKETGLQNMDPVLNKISKQKFNNTSKYDFEKLLADPDNIASNLRNYVNGFSKNAREIIE 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            FDF   I +L    LLY I   F+ I+LHPD V +  M  I+E LIRRF       A D
Sbjct: 117 YFDFDKQITKLNDNNLLYLIVSEFNKIDLHPDAVSNMEMGYIFEELIRRFSEHA--EAGD 174

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L   +LL+ D       PG++ T+YD   GTGG L+    ++ +     ++
Sbjct: 175 HYTPREVIRLMVNILLNEDKESLTT-PGLVVTVYDCCAGTGGMLSVTEQYLKELNPGIQV 233

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQE+ P+++++C + MLI+  ++D       NI  G + ++D   GK F Y L
Sbjct: 234 E----LFGQEINPQSYSICKSDMLIKGQDAD-------NIILGDSFTEDGHKGKTFRYML 282

Query: 297 SNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPFG +W+K +  + +E++  G  GRFG GLP+ISDGS+LFL HL +K++     G R
Sbjct: 283 TNPPFGVEWKKAEKFIREEYEKEGFDGRFGAGLPRISDGSLLFLQHLISKMKQDEK-GSR 341

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AI+ + SPLF G AGSGESEIRRW++END++E I+ALP  LF+ T I+TY+WI++NRK 
Sbjct: 342 IAIIFNGSPLFTGDAGSGESEIRRWIIENDMLEGIIALPDQLFYNTGISTYIWIVTNRKN 401

Query: 416 EE------RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            +      R GK+QL+NA D +  +R   G KR  I+++Q  +I  IY   +  ++ ++ 
Sbjct: 402 NDLMKGPARAGKIQLVNAVDFYQKMRKSLGNKRNEISEEQIEEITRIYGEFKENEYCKIF 461

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMM 523
           D   FGYR+I V RPLR++F + +  +  L  +  ++KL+   +        ++  K + 
Sbjct: 462 DNEDFGYRKIVVERPLRLNFQVTEERINNLYNERAFQKLAESKKKGTAGLREIEEGKKLQ 521

Query: 524 QQI--------YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
           QQI            +    V         K   VK   + + A I+A   KD  AD   
Sbjct: 522 QQIIAVLKTMNSDIMYKNREVFTKELKKAFKHSDVKLDNALLKAIISALSEKDETADICL 581

Query: 576 DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
           D  G   PD +L + ENVP  E I DYF REV PHVPDA+I        D+   ++GYEI
Sbjct: 582 DAKGNPEPDPDLRDTENVPLKEDIHDYFEREVKPHVPDAWI--------DESKTKIGYEI 633

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            F R FY+Y+P R  ++I  E+K +E  I   L+++  E
Sbjct: 634 PFTRHFYKYEPLRPSEEILEEIKQLEKSIQQKLQKVIGE 672


>gi|217977715|ref|YP_002361862.1| N-6 DNA methylase [Methylocella silvestris BL2]
 gi|217503091|gb|ACK50500.1| N-6 DNA methylase [Methylocella silvestris BL2]
          Length = 673

 Score =  737 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/687 (40%), Positives = 398/687 (57%), Gaps = 36/687 (5%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++L +F+W  AE L GDFK +D+GKVILPF ++RRL+C LE T+  V E   +    
Sbjct: 4   EKTSNLGSFVWSIAEILRGDFKQSDYGKVILPFIVMRRLDCILEATKPYVLEAAKSL-PE 62

Query: 66  NIDLES----FVKVAGY--SFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIF- 115
            ID E+        AG     YNTS ++ ++L   +     +NL  +I  FS N + IF 
Sbjct: 63  GIDDETRDMILFGAAGDKIRVYNTSRFTFTSLKGQDPGQVHDNLIDFITGFSPNVRDIFL 122

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           + F F+  + RL+  G+L+++ + F  I+LHP+ V +  M  ++E LIRRF    +E A 
Sbjct: 123 DKFRFTEALKRLKDGGILWQVFERFCAIDLHPNHVSNIEMGYLFEDLIRRFSEISNETAG 182

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L   LLL  D A      G+IRT+YDP CGTGG L      +       +
Sbjct: 183 EHFTPREVIRLIVELLLANDHAALT-GTGIIRTVYDPACGTGGMLALTEEAMTALNPKVR 241

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQEL  E+  +C + ML+            + I  G+TL++D   GK FHY 
Sbjct: 242 VE----LFGQELNGESFGICKSDMLVTGHNP-------EQIAFGNTLTEDAHLGKTFHYM 290

Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           LSNPP+G  W+K +D +  EH+  G  GRFGPGLP+ISDG +LFL+H+ +K+      G 
Sbjct: 291 LSNPPYGVDWKKYQDPIRAEHETKGFDGRFGPGLPRISDGQLLFLLHMISKMRDD-EQGS 349

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R  IV++ SPLF G AGSGESEIRRW+LE D +EAIVA+PTDLF+ T I+TY+W+L+NRK
Sbjct: 350 RIGIVMNGSPLFTGGAGSGESEIRRWMLEKDWVEAIVAMPTDLFYNTGISTYVWLLNNRK 409

Query: 415 TEERRGKVQLINAT--DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG-----KFSR 466
              RRGKVQLI+A+    W S+R   G KRR I +  R +I+ IY    NG     +FS+
Sbjct: 410 PSARRGKVQLIDASSERFWKSMRKSLGSKRREIPEAARHEIVRIYAEMLNGDGPYGEFSK 469

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           ++D   FGYR I++ RPLR++F      LARL  +   +KL    +   LD    +   +
Sbjct: 470 IVDREDFGYREIRIERPLRLNFQATPKRLARLAEEKAVQKLEIGERQELLDA---LAHNL 526

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
               +      E + +   K +  K       A ++A   +D  AD   D NG+   DT 
Sbjct: 527 PTQSFTNRDAFEKVLTRALKGVGGKIGAPLKKAILSALSERDESADICLDANGKPESDTQ 586

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L ++E VP  +  +D+  REV+P VPDA++D+ + D++D E GRV YEINFNR+FY+Y P
Sbjct: 587 LRDHELVPLNDDWRDFVAREVTPFVPDAWVDENYRDDRDGETGRVAYEINFNRYFYKYVP 646

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673
            R L  ID ELK +EA+IA LL+E+A 
Sbjct: 647 PRPLAQIDCELKQLEAEIAGLLKEVAA 673


>gi|320352392|ref|YP_004193731.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032]
 gi|320120894|gb|ADW16440.1| N-6 DNA methylase [Desulfobulbus propionicus DSM 2032]
          Length = 730

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 262/750 (34%), Positives = 376/750 (50%), Gaps = 101/750 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + + LANFIW     L G +K  ++ KVILP T+LRR EC LEPTR A  E++ +  
Sbjct: 2   NGETHSQLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQAALEEFQSLK 61

Query: 64  --GSNIDLESFVKVAGYSFYNTSEYSLST---------LGSTNTRNNLESYIASFSDNAK 112
                +      ++ G+ FYN S   L+              N   NL SYI  FS N +
Sbjct: 62  TKPERVQQARLQQITGHRFYNLSRMQLTLPGEKIHSLLDDPNNLAPNLNSYINGFSANVR 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           AI E F FS  IA + +  +L+++ K F+GI+L P  V    M  ++E LIR    + +E
Sbjct: 122 AIMEKFKFSEQIAHMAEKNILFEVIKAFAGIDLSPQRVDQMQMGYVFEELIRIGAEQSNE 181

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPR+V+ L   LLL P+  L K    +++T+YDP CGTGG L+ A  ++    S
Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEQDLAKS--HVVKTIYDPACGTGGMLSVAEEYIRHLNS 239

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
             K        GQ+   E  AVC + MLI+  +++       NI  G + ++D F     
Sbjct: 240 EAKPK----VFGQDWNDEAWAVCKSDMLIKGEDAN-------NIILGDSFTRDGFDRDSD 288

Query: 291 ----RFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANK 345
                F Y L+NPPFG +W++ +  +++E    G  GRFG G P+I+DG++LFL H+  K
Sbjct: 289 GNKWTFDYMLANPPFGVEWKQQQKTIQQEADTLGYAGRFGAGTPRINDGALLFLQHMIAK 348

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +      G R AIV + SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T IAT
Sbjct: 349 MRPVDKDGSRIAIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIAT 408

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND----------DQRRQILD 454
           Y+W+++NRK +ER+GK+QLI+A + W  + ++ G KRR I D          D    I  
Sbjct: 409 YIWVITNRKAKERKGKIQLIDARNFWVQMEKSLGNKRRRIGDPNDPNHPRDPDYIADITR 468

Query: 455 IYVSRENGK----------------------------------FSRMLDYRTFGYRRIKV 480
           +Y +  +G+                                   S++ D   FGY +I V
Sbjct: 469 VYENFTDGESRWVVFDKDSKVLGVNGLEPTVDDSNGQKKKYLVVSKLFDNEDFGYHKITV 528

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLH-----------------QSFWLDILKPMM 523
            RPLR++F      +ARLE    ++ L+                    Q    D+L    
Sbjct: 529 ERPLRLNFQATAERIARLEEQTAFKNLATSSKKNEIVRQQEIETGKARQQAIRDLLAAFA 588

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Q     + +            +   VK S   + A +   G +D  A    D  G   P
Sbjct: 589 DQHGDTLFKDRKQFLLALREIDRARGVKLSAPELKAVLAVLGERDETASICRDKQGNPEP 648

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           DT+L + E VP  E +++YF REV PHVPDA+ID            +VGYEI  NR FY+
Sbjct: 649 DTDLRDTETVPLKEGVEEYFRREVLPHVPDAWIDH--------SKTKVGYEIPLNRHFYR 700

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y+P R+L +I+AE+K +E +I  LL E+  
Sbjct: 701 YEPPRELAEIEAEIKVLEGEILDLLREVTA 730


>gi|218960558|ref|YP_001740333.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729215|emb|CAO80126.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Cloacamonas acidaminovorans]
          Length = 690

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/707 (36%), Positives = 374/707 (52%), Gaps = 64/707 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLA 61
            + + + +A+FIW     L G +K  ++ KVILPFT+L+R +C L PT+  V  +  +L 
Sbjct: 1   MSQNHSQIASFIWSICNLLRGPYKRNEYRKVILPFTVLKRFDCILAPTKDNVLAELPHLY 60

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
               NI  ES +++ G  FYN S   +  L   + N   NL+SYI  FS N + I E F 
Sbjct: 61  GKSDNIISESLIRITGVPFYNKSRLDMKKLLDDTENIAINLQSYINDFSPNVQKIIEYFA 120

Query: 120 FSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           FS  IARL+ A LLY + + F    ++L P  V +  M  ++E LIR    + +E A + 
Sbjct: 121 FSEQIARLQDANLLYLVLQRFVTDELDLSPQAVDNIQMGLVFEELIRIGAEQSNEEAGEH 180

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   LLL P+  L K    +++T++DP CGTGG LT A  ++ +     K  
Sbjct: 181 FTPREVIKLMVNLLLSPEADLAKS--HVVKTIFDPACGTGGMLTAAETYIKELNRDAKP- 237

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                +GQ+   E++AVC + MLI+             I  G +  +D F+  +F Y L+
Sbjct: 238 ---HLYGQDWNKESYAVCCSDMLIKG--------EVAKIHYGCSFEQDGFSTDKFDYMLA 286

Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG +W+K +  +  EH K G  GRFG GLP+I+DGS+LFL H+ +K+     GG R 
Sbjct: 287 NPPFGVEWKKQQKTITDEHEKLGYNGRFGAGLPRINDGSLLFLQHMISKMRSVEEGGSRI 346

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            IV + SPLF G AGSGES IR+W++END +EAI+A+P  LF+ T I+TY+WI++N+K  
Sbjct: 347 GIVFNGSPLFTGDAGSGESNIRKWIIENDWLEAIIAMPDQLFYNTGISTYIWIITNKKEA 406

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIIND------DQRRQILDIYVSRENGK------ 463
            R+GK+QLI+A   +  +R   G KR II D      D    I  I+    + +      
Sbjct: 407 HRKGKIQLIDARQFYNKMRKSLGNKRNIIGDGEDNRFDHISLITRIHSDFIDNQELEFTC 466

Query: 464 --------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL------SP 509
                    S++ D + FGY++I V RPLR++F + +  +ARL+ + T+ KL       P
Sbjct: 467 NGTTKTAIVSKIFDNKDFGYQKITVERPLRLNFQVSQERIARLDNNTTFAKLVESKKKDP 526

Query: 510 LHQSFWLDILKPMMQQI--------YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
           + +   +D  K +  +I            +                  +      + A +
Sbjct: 527 IEKQREMDAGKALQDRIKAALNSMDGSIIYMNREQYLKALRQALLQHHLSLGNPELKAIL 586

Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
            A   +D  AD   D  G    DT L + ENVP  E I  YF REV PHVPDA+I     
Sbjct: 587 EALSERDETADICRDSKGMPEADTELRDTENVPLKEDIDTYFKREVLPHVPDAWI----- 641

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
              D    ++GYEI FNR FY YQP R L+ I+AEL  +E +I  LL
Sbjct: 642 ---DYSKTKIGYEIPFNRHFYVYQPPRGLEVIEAELFNIEKEIEALL 685


>gi|114563774|ref|YP_751287.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400]
 gi|114335067|gb|ABI72449.1| N-6 DNA methylase [Shewanella frigidimarina NCIMB 400]
          Length = 683

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/700 (42%), Positives = 402/700 (57%), Gaps = 51/700 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +  A  +W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+  V  KY A  
Sbjct: 1   MTNNFSQTAALLWSVADILRGDFKQSQYGRIILPFTLLRRLECVLEATKPDVLAKYEAVK 60

Query: 64  GS--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                   +     A  SFYNTS+  L  LG     +NLESYI SFS NA+ IFE FDF 
Sbjct: 61  AMPLEAQDKLLTHTAQLSFYNTSKMDLHRLGEMGIASNLESYIQSFSPNAREIFEHFDFF 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +TI +L +A LLYK+ K F+   L P+ + +  M  ++E LIRRF    +E A +  TPR
Sbjct: 121 NTIDKLAEADLLYKVAKQFANAPLSPENISNYGMGLVFEELIRRFAESSNETAGEHFTPR 180

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+V L T+L+   DD +  ++ G++R++YDPT GTGGFL+  M ++ +          L 
Sbjct: 181 DIVRLTTSLVFSNDDDVLTQA-GLVRSIYDPTAGTGGFLSSGMEYLHELNEKA----SLS 235

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL PE++A+C A MLI+  + D       NI+ G+TLS DL    +F Y LSNPPF
Sbjct: 236 AFGQELNPESYAICKADMLIKGQKVD-------NIKLGNTLSNDLLRNDKFDYMLSNPPF 288

Query: 302 GKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G  W+K +  +  E+   G  GRFG GLP++SDGS+LFLMHL +K+     GG R  I+L
Sbjct: 289 GVDWKKIQKFINTEYTDKGFEGRFGAGLPRVSDGSLLFLMHLVSKMRPKHEGGSRIGIIL 348

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           + SPLF G AGSGESEIRR++LENDL+EAIVALP+D+F+ T I+TY+WILS+ K      
Sbjct: 349 NGSPLFTGGAGSGESEIRRYILENDLLEAIVALPSDMFYNTGISTYVWILSSNKGASHNG 408

Query: 419 --RGKVQLINATD-----------------------LWTSIRN-EGKKRRIINDDQRRQI 452
             +GKVQLINA+                         +  +R   G KR+ + +D    I
Sbjct: 409 ARKGKVQLINASKERAKTGGRGRSGGGESDEVVENIFYAPMRKSLGSKRKELTEDGIETI 468

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLH 511
           +  Y       FS++ DY  FGYRRI V RPL+++ +  D+T +A L+AD  W KL    
Sbjct: 469 VKTYGQFIENDFSKIFDYHVFGYRRITVERPLQLAIYPKDQTRVAALQADNAWDKLDQAV 528

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
           Q   +D L    +        ++F+KE +K    K   +K S       +   G  D  A
Sbjct: 529 QYSVIDSLAGFTED--KLLSRDAFLKELMK----KLNGIKLSSVQQKLIVKHLGEHDDDA 582

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
                  G    + +L ++ENVP  ESI  YF REV PHVP+A+IDK   D KD E+G V
Sbjct: 583 QLC-KAKGRVEANPDLRDFENVPLTESIYKYFDREVIPHVPNAWIDKTKTDPKDHEVGIV 641

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GYEI FNR FY+Y   R+L+DIDA+L  V  +I  LL E+
Sbjct: 642 GYEIPFNRHFYEYASPRELEDIDADLDIVSTEIMQLLNEV 681


>gi|260427933|ref|ZP_05781912.1| N-6 DNA methylase [Citreicella sp. SE45]
 gi|260422425|gb|EEX15676.1| N-6 DNA methylase [Citreicella sp. SE45]
          Length = 673

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/675 (59%), Positives = 502/675 (74%), Gaps = 6/675 (0%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T +  +LA+FIWKNA+DLWG+FKHTDFGK+ILPFTLLRRLEC LEPTR A  +   
Sbjct: 1   MSQETKNNTTLADFIWKNADDLWGNFKHTDFGKIILPFTLLRRLECVLEPTREATLQAVE 60

Query: 61  AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            F GS ID+   ++   GY FYNTS Y+L++LG+T TR NLE YI  FSDNA+ IF+ FD
Sbjct: 61  NFKGSGIDMGVLLRQQTGYPFYNTSSYTLASLGATRTRQNLEDYIGQFSDNARVIFDQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+AR+++AG+LYKIC NF+ ++LHP+ VP+R MSN+YEHLIR+FG+EV+E AEDFMT
Sbjct: 121 FINTVARMDRAGVLYKICLNFAAMDLHPEAVPERTMSNVYEHLIRKFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLL+PDD LF++  G+IRTLYDPTCGTGGFL+D M HVA+     K+ P+
Sbjct: 181 PRDVVHLAIELLLEPDDELFRQDEGLIRTLYDPTCGTGGFLSDGMEHVANLRDRFKVAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++P+GQELEPETHAVC+A ML++ +ESDP RDLSKNI+ GSTLS D    ++FHYC+SNP
Sbjct: 241 IIPYGQELEPETHAVCLASMLLKTVESDPGRDLSKNIKLGSTLSDDKHRSEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWE D+ AV +EHK     GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI
Sbjct: 301 PFGKKWEMDQAAVTREHKEQQFEGRFGPKLPRVSDGSMLFLLHLLSKLETPENGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VLS SPLFNG AG GESEIRR LLE D++E+I+ALP ++FFRT I+TY+WILSN+K   R
Sbjct: 361 VLSGSPLFNGNAGQGESEIRRHLLEQDVVESIIALPQEIFFRTGISTYIWILSNKKPAHR 420

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINAT L+  +R   G KRR + ++Q R+I+ +Y   E  K S +LD   FGYRR
Sbjct: 421 KGKVQLINATGLYEPLRKSEGNKRRKVGEEQTREIVRMYSDFEASKESLILDSTEFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           IKVLRPLR   ++ + G+A +  +  W K S   Q+ WLD+ +  M +   + W ESF K
Sbjct: 481 IKVLRPLRKKMVISEDGIAAVADEKAWEKRSAEQQAAWLDLFRENMDREEGWHWMESFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
            S K  +A     K   + I AF  AFG +DP  D V D  G  IPD +LT++ENVP   
Sbjct: 541 NSAKRTDALG---KVDAALIKAFQKAFGVRDPELDEVVDKKGNVIPDDDLTDFENVPLGT 597

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I+DY   EV PH  DAYID+ F DE D  IG VGYEINFNR+FY+YQP R+L+DIDAEL
Sbjct: 598 DIRDYLAAEVLPHAEDAYIDETFRDETDGGIGIVGYEINFNRYFYEYQPPRELEDIDAEL 657

Query: 658 KGVEAQIATLLEEMA 672
           K VEA+IA +L E+ 
Sbjct: 658 KAVEAEIAGMLAEVT 672


>gi|251791802|ref|YP_003006523.1| N-6 DNA methylase [Dickeya zeae Ech1591]
 gi|247540423|gb|ACT09044.1| N-6 DNA methylase [Dickeya zeae Ech1591]
          Length = 708

 Score =  733 bits (1893), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/728 (35%), Positives = 382/728 (52%), Gaps = 79/728 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--A 61
              +   LANFIW     L G +K  ++ KVILP T+LRR EC LEPTR     ++    
Sbjct: 2   NGETHRQLANFIWSICNLLRGPYKRNEYRKVILPLTVLRRFECLLEPTRQDALAEFQWLK 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLST---------LGSTNTRNNLESYIASFSDNAK 112
                +      ++ GY FYN S   L+              N   NL SYI  FS N +
Sbjct: 62  TKPERVQQARLQQITGYRFYNLSRMQLTLSGENIHSLLDDPNNLAPNLNSYINGFSANVR 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           AI E F FS  I  + +  +L+++ K F+ I+L P  V    M  ++E LIR    + +E
Sbjct: 122 AIMERFKFSEQITHMAEKNILFEVVKAFAKIDLSPQRVDQMQMGYVFEELIRIGAEQSNE 181

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPR+V+ L   LLL P++ L K    +++T+YDP CGTGG L+ A  ++    S
Sbjct: 182 EAGEHFTPREVIKLMVNLLLAPEEDLAKSD--VVKTIYDPACGTGGMLSVAEEYIRHLNS 239

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR- 291
             +       +GQ+   E  AVC + MLI+  ++D       NI  G T ++D F     
Sbjct: 240 DARP----HLYGQDWNDEAWAVCKSDMLIKGEDAD-------NIILGDTFTRDGFDRDSD 288

Query: 292 -----FHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANK 345
                F Y L+NPPFG +W++ +  ++KE  + G  GRFG G P+I+DG++LFL H+ +K
Sbjct: 289 GNKWIFDYMLANPPFGVEWKQQQKYIQKEADELGYAGRFGAGTPRINDGALLFLQHMISK 348

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           +      G R  IV + SPLF G AGSGESEIRRW++END +EAIVALP  LF+ T IAT
Sbjct: 349 MRPVNKDGSRIGIVFNGSPLFTGDAGSGESEIRRWIIENDWLEAIVALPEQLFYNTGIAT 408

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND--------DQRRQILDIY 456
           Y+W+++NRK +ER+GKVQLI+A + W  + ++ G KRR I D        +   +I  IY
Sbjct: 409 YIWVITNRKAKERKGKVQLIDARNFWVPMEKSLGNKRRRIGDPQDRPKDPNHIAEITRIY 468

Query: 457 VSRENGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            + ++G+               S++ D   FGY +I V RPLR++F      +ARLE   
Sbjct: 469 ENFQDGETRTFFLDGKEKELVVSKLFDNDDFGYHKITVERPLRLNFQATAERIARLEEQT 528

Query: 503 TWRKLSPLH-----------------QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            ++ L+  +                 Q    ++L     Q     + +  +         
Sbjct: 529 AFKNLASSNKKNETVRQQEIEAGRARQQEIRNLLADFADQHGDTLYKDRKLFLLALREVD 588

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605
           +   +K S + + A I A G +D  A+   D  GE   DT+L + E VP  ESI++YF R
Sbjct: 589 RARNIKLSAAELKAVIAALGERDETAEICKDKKGEPEADTDLRDTETVPLKESIEEYFQR 648

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV  HVPDA+ID            ++GYEI  NR FY+Y+  R+L +I+AE+KG+E++I 
Sbjct: 649 EVLLHVPDAWIDYAK--------TKIGYEIPLNRHFYRYEEPRELTEIEAEIKGLESEIL 700

Query: 666 TLLEEMAT 673
            LL+E+  
Sbjct: 701 ELLKEVTA 708


>gi|291287372|ref|YP_003504188.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|291287881|ref|YP_003504697.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290884532|gb|ADD68232.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885041|gb|ADD68741.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 639

 Score =  733 bits (1892), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/668 (45%), Positives = 420/668 (62%), Gaps = 35/668 (5%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             + AN IW  A+ L GDFK  ++G++ILPF +LRRLEC LEPTR +V E+Y A     +
Sbjct: 3   QQTFANKIWSVADLLLGDFKQAEYGRIILPFMVLRRLECVLEPTRESVLEQYEAVKDQGL 62

Query: 68  DLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           DL+  +  +AG +FY TS+++LSTLG+TNT+ NLE YI+ FS N + +FE F FSS I +
Sbjct: 63  DLDLILPGIAGCTFYTTSKFTLSTLGATNTKQNLEDYISKFSSNVRQVFEQFSFSSWIGK 122

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           LE+A LLY +   F  +ELHP  V +  M  ++EHLIR+F    ++ A +F TPRDVV L
Sbjct: 123 LEEANLLYLVSNEFKDLELHPSVVSNYEMGLVFEHLIRKFAEASNDTAGEFYTPRDVVRL 182

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
           AT L+   D        G++RT+YD   GTGGFL+  +  V +  ++      ++P+ QE
Sbjct: 183 ATTLVFSTDQEALS-GEGIVRTIYDCAAGTGGFLSSGIELVGEWNTNA----TIIPYAQE 237

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L PETHA+CVA  LI+  +       ++NI+ G+TLS DL +G+ F+YCL+NPPFG  W+
Sbjct: 238 LNPETHAICVADKLIQGYD-------TRNIKFGNTLSNDLLSGETFNYCLANPPFGVDWK 290

Query: 307 KDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K +  V  EH+  G  GRFGPGLP++SDGSMLFL+HL +K + P  GG R  IVLS SPL
Sbjct: 291 KVQKPVNDEHRVKGYAGRFGPGLPRVSDGSMLFLLHLLSKRKPPEEGGTRIGIVLSGSPL 350

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG AGSGESEIRRW+LEND +EA+VALPTD+F+ T I+TY+W+LS  K E R+G VQLI
Sbjct: 351 FNGGAGSGESEIRRWILENDWLEALVALPTDMFYNTGISTYIWVLSTNKEEHRKGLVQLI 410

Query: 426 NATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
           +A+ + T +R N G KR+ +ND+Q  +   I+ + E    S++ +   FGYRRI V RPL
Sbjct: 411 DASKISTPMRKNLGSKRKWLNDEQITETARIHDAFEESDVSKIFETEQFGYRRITVERPL 470

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           ++ F +    +                 S   + +  + +    Y   +SF+K +     
Sbjct: 471 QLKFSVTPENIES------------WANSKNAEYVDELSKVSGEYLDIDSFLKAAGIK-- 516

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604
                 K S + I      FG+  P A  + D  G  +PD +L +YENVP  E I +YF 
Sbjct: 517 ------KPSAALIKNICKFFGKHYPDAKVICDAKGNPLPDPDLRDYENVPLGEDIDEYFE 570

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           REV PHVPDA+ID    D KD  +G VGYEINFNR+FY+Y P R L+DIDA+L+ VE  I
Sbjct: 571 REVIPHVPDAWIDTAKKDHKDGLVGIVGYEINFNRYFYEYVPPRSLEDIDADLEAVENAI 630

Query: 665 ATLLEEMA 672
           A LL+++ 
Sbjct: 631 AELLKKVT 638


>gi|134097472|ref|YP_001103133.1| type I restriction-modification system methyltransferase subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910095|emb|CAM00208.1| type I restriction-modification system methyltransferase subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 652

 Score =  732 bits (1891), Expect = 0.0,   Method: Composition-based stats.
 Identities = 272/676 (40%), Positives = 398/676 (58%), Gaps = 41/676 (6%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L+PTR  V E    +   ++D ++
Sbjct: 2   ANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLKPTRGKVLETVEKYRNRDLDPDT 61

Query: 72  FVK-VAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           F++  +G+ FYNT+  +L ++ +   +   NL  YI  FS NA  + E +DF+  I +L+
Sbjct: 62  FLRKASGHRFYNTTPLTLKSIVADSSHVARNLTQYIGGFSPNAYEVLERYDFAQQIKKLD 121

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            A LLYK+   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TPR+V+ L  
Sbjct: 122 GANLLYKVTSTFADLDLRPEVVDNHQMGYIFEELIRRFAEQSNETAGEHFTPREVIELMV 181

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            LL+ PDD      PG+IR + DP CGTGG L+ A  H+    +   +      +GQEL 
Sbjct: 182 NLLIAPDDEALS-KPGVIRRVLDPACGTGGMLSAAYEHITTMNADATVE----VYGQELN 236

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           PE+ A+C + ++I+  + D       NI+ G++ S D    + FHY L+NPPFG +W+K 
Sbjct: 237 PESWAICRSDLMIKDQDPD-------NIKFGNSFSDDGHYRRTFHYLLANPPFGVEWKKV 289

Query: 309 KDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           K+ VE + +  GE  RF P LP+I+DGS+LFL H+ +K+    +GGGR AIV + SPLF 
Sbjct: 290 KEDVEGDLEQLGENSRFWPALPRINDGSLLFLQHMLSKMNSVEDGGGRVAIVFNGSPLFT 349

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AGSGES+IR+ +LEND +EA+VALP  LF+ T I+TY WIL+NRK+ + +GKV L++A
Sbjct: 350 GAAGSGESQIRQHILENDWLEAVVALPDQLFYNTGISTYFWILTNRKSPDYKGKVVLLDA 409

Query: 428 TDLWTSIRN-EGKKRRIINDDQRRQILDIY-----VSRENG----KFSRMLDYRTFGYRR 477
            + W  +R   G KR+ +  DQ  +I  +Y     V+++         ++ +   FGYRR
Sbjct: 410 REYWQKMRKSLGDKRKYVASDQIAEITRLYAEALQVAKDENHPLHGKVKVFENDDFGYRR 469

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I V RPL++ F   +  LA L      +KL    Q  ++  L+P++ Q +   W ++   
Sbjct: 470 ITVERPLKLRFEFTEEILASLGEAKQIQKLDDPEQ--FVAALRPLLGQTW---WKKTEAW 524

Query: 538 ESIKSN-EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
            ++K    A  L      +F  A  +A G +DP  +      GE  PD  L +YENVP  
Sbjct: 525 LALKDAIVAAGLTWPTGAAFNKALRDAIGVRDPEGEVQI-AKGETEPDPELRDYENVPLD 583

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           + ++DY  REV PHVPDA+ID            ++GYEI F R FY Y+P R L +IDAE
Sbjct: 584 QDVEDYLEREVLPHVPDAWIDHTK--------TKIGYEIPFTRHFYVYEPPRPLAEIDAE 635

Query: 657 LKGVEAQIATLLEEMA 672
           LK +EA+I  LL E+ 
Sbjct: 636 LKALEAEIQELLGEVT 651


>gi|21243627|ref|NP_643209.1| type I restriction-modification system DNA methylase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21109202|gb|AAM37745.1| type I restriction-modification system DNA methylase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 685

 Score =  731 bits (1888), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/674 (58%), Positives = 495/674 (73%), Gaps = 12/674 (1%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            S   LA+FIWKNAEDLWGDFKHTDFGK+ILPFTLLRRLEC LEPTR  VRE +  F   
Sbjct: 16  ASDTVLASFIWKNAEDLWGDFKHTDFGKIILPFTLLRRLECVLEPTRDVVRETHAKFKDK 75

Query: 66  NIDLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            +D +  ++  AG  FYNTS+YSL+TLG+T T++NLE+Y+A+FSDNA+ IF+ F+F+ TI
Sbjct: 76  GLDTDLILRQKAGLPFYNTSQYSLATLGATKTKSNLEAYVAAFSDNARVIFDQFNFTDTI 135

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ARL +A +L+KIC+NF+  +LHPD VPDRVMSNIYEHLIRRFGSEV+E AEDFMTPRDVV
Sbjct: 136 ARLARADILFKICQNFANTDLHPDVVPDRVMSNIYEHLIRRFGSEVNEAAEDFMTPRDVV 195

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HLAT LLLDPDDALF+ SPG+IRTLYDPTCGTGGFLTDAMN+V    +  K PP+L+P G
Sbjct: 196 HLATTLLLDPDDALFRNSPGLIRTLYDPTCGTGGFLTDAMNYVDGFAAQGKAPPVLIPFG 255

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGK 303
           QELEPETHAV +A ML+RRLE++P RDLS N+    STLS+D + G+RFHYCLSNPPFGK
Sbjct: 256 QELEPETHAVALANMLLRRLETEPSRDLSANVAGPKSTLSQDAYAGQRFHYCLSNPPFGK 315

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           KWEKD+  VE+E K  G  GRFG G P++SDGSMLF+ HL +KLE P  GGGRAAI+LS 
Sbjct: 316 KWEKDQAFVEREAKEKGFEGRFGAGTPRVSDGSMLFIQHLISKLEHPNKGGGRAAIILSG 375

Query: 363 SPLFNGRAGS---GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           SPLF G AG     ES+IRRWLLE D +E IVALP D+FFRT I TY+W+L+N K E+RR
Sbjct: 376 SPLFTGTAGGHGHSESQIRRWLLEKDYVETIVALPNDIFFRTGIGTYIWLLTNNKPEDRR 435

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+AT++ + +R  EG KRR ++D Q + I  +Y     G+  R++DYR FGYRRI
Sbjct: 436 GKIQLIDATEMHSPMRKAEGNKRRYLSDGQIQDIARLYADYTPGENVRIVDYRDFGYRRI 495

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           KV RPLR+   + + GLA L     + KL    QS WL +L+  + Q YPY W       
Sbjct: 496 KVQRPLRLVAKVTEEGLATLATSKAFAKLDETEQSGWLTLLRKHLGQTYPYTW-----FA 550

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
           ++ +   K    K +K+   A  +A G +D +A  V D +G  + D +L ++E VP  + 
Sbjct: 551 TLPALAKKAGLPKIAKALATALESALGVRDDKAPEVVDADGNLVADKDLEDFETVPLDQP 610

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  Y   EV PHV DA++D  F D++D + G+VGYEINFNR+FY+Y P R L +ID+ELK
Sbjct: 611 IDTYMAAEVLPHVSDAWVDASFTDDEDGQRGKVGYEINFNRYFYKYVPPRDLHEIDSELK 670

Query: 659 GVEAQIATLLEEMA 672
            VEA+IA LL+E+A
Sbjct: 671 AVEAEIAALLDEVA 684


>gi|148360830|ref|YP_001252037.1| putative type I restriction enzyme M protein [Legionella
           pneumophila str. Corby]
 gi|148282603|gb|ABQ56691.1| Putative type I restriction enzyme HindVIIP M protein [Legionella
           pneumophila str. Corby]
          Length = 676

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/690 (40%), Positives = 391/690 (56%), Gaps = 34/690 (4%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            E      +L+ F W  AE L GDFK +++GKVILPF +LRRL+C LEP++ AV   Y  
Sbjct: 3   NENNKKIQNLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILEPSKDAVISAYEN 62

Query: 62  FGGSNIDL--ESFVKVA---GYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKA 113
                 D   +  +  A   G   YN +  + S +      +   NL  YI SF+ + + 
Sbjct: 63  LPEGIDDHTKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDVHKNLLDYITSFNSSVRD 122

Query: 114 IF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           IF E F F+  + RL+  G+L+++   F  I+LHPD V +  M  ++E LIRRF    +E
Sbjct: 123 IFLEKFLFTDQLKRLKDGGILWQVFDRFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNE 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPR+V+ L   LLL  D        G+IRT+YDP CGTGG L      + +  S
Sbjct: 183 TAGEHFTPREVIRLIVDLLLINDAEALA-GSGIIRTVYDPACGTGGMLALMEEAMKEYNS 241

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             ++      +GQEL PE+  +C + ML+            + I  G+TL++D    K+F
Sbjct: 242 KIRVE----LYGQELNPESFGICTSDMLVTGHNP-------EQIAFGNTLTEDAHKDKKF 290

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           HY LSNPP+G  W+K +D +++E  + G  GRFG GLP+ISDG +LFL H+ +K+     
Sbjct: 291 HYMLSNPPYGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMRDD-E 349

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV++ SPLF G AGSGESEIRRW+ END +EAI+ALPTDLF+ T I TY+W+L+
Sbjct: 350 VGSRIGIVMNGSPLFTGGAGSGESEIRRWMFENDWVEAIIALPTDLFYNTGIQTYVWMLT 409

Query: 412 NRKTEERRGKVQLINAT--DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG-----K 463
           N+K + RRGKVQLI+A+    W S+R   G KRR I+D  R +I+ IY    NG     +
Sbjct: 410 NKKDKNRRGKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSE 469

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           FS++ D + FGYR I++ RPLR++F   K  L  L+ + T+ KLS + Q   L  L    
Sbjct: 470 FSKIFDRQEFGYREIRIERPLRLNFEGSKERLELLQQENTFLKLSEIEQQELLTALN--- 526

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
                  +      E       K L  K +     A +     KD  AD   D  G   P
Sbjct: 527 HNTLKQQFKNRDAFEKALKTALKNLSFKLTAPLKKAILTTLSEKDETADICCDAKGNPEP 586

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           DT+L ++E VP  E  ++Y  REV P V DA++D+   D  D ++GRVGYEINFNR+FY+
Sbjct: 587 DTDLRDHELVPLKEDWREYVEREVKPFVADAWVDENHKDATDGKVGRVGYEINFNRYFYK 646

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y P R + +I+ ELK +EA+IA LL+E+  
Sbjct: 647 YVPPRPVAEINEELKQLEAEIANLLKEVVA 676


>gi|256375105|ref|YP_003098765.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255919408|gb|ACU34919.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 670

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 271/693 (39%), Positives = 392/693 (56%), Gaps = 49/693 (7%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +     LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L PT+  V E    F 
Sbjct: 2   NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLTPTKDKVLETAERFA 61

Query: 64  GSNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              +D + F++  +G+SFYNTS Y+L  +   +T+    L  Y+ +FS NA+ + E ++F
Sbjct: 62  DREMDPDRFLRKASGHSFYNTSTYTLKAIAGDATHAAKYLNEYLGAFSPNAREVLERYEF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  + +L+ A LLY++   F+ ++L P+ V +  M  I+E LIRRF  + +E A +  TP
Sbjct: 122 AQQVKKLDAADLLYQVLGRFADLDLRPEVVTNHQMGYIFEELIRRFAEQSNETAGEHFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LL+ PD  +    PG +RT+ DP CGTGG L+ A   +        +    
Sbjct: 182 REVIDLMVKLLIAPDSDVLSV-PGAVRTVLDPACGTGGMLSAAEEEITKHNKDATVK--- 237

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE+ A+C + M+I+  +        +NI+ G++ S D      F Y L+NPP
Sbjct: 238 -VFGQELNPESWAICRSDMMIKGQDP-------ENIKFGNSFSDDSHAHATFDYVLANPP 289

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL---PPNGGGRA 356
           FG  W+K ++ VE+EHK  GE GRFG GLP+I+DGS+LFL H+ +K++       GG R 
Sbjct: 290 FGVDWKKVQETVEREHKMLGESGRFGAGLPRINDGSLLFLQHMISKMKPVDVDGKGGSRV 349

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV + SPLF G A SGES+IRRW+LEND +E IVALP  LF+ T I TY WI+SNRK++
Sbjct: 350 AIVFNGSPLFTGAADSGESKIRRWILENDWLEGIVALPDQLFYNTGIFTYFWIVSNRKSK 409

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVS----------------R 459
            R+GKV L++A D W  +R   G KR++IN+ Q  +I  +Y                  R
Sbjct: 410 GRQGKVVLLDARDYWQKMRKSLGDKRKMINEQQISEITRLYTEALAILDAEKNDQMHDLR 469

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             G+  ++     FGYRRI V RPL++ F + +  L  L A    +K +      +   L
Sbjct: 470 NKGRKIKLFRNEDFGYRRITVERPLKLRFKVTEETLFALRAAKPVQKTTDAE--MFTAAL 527

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           +P++ +   +        +   +  A  L       F     +A G +DP  + V  + G
Sbjct: 528 RPLIGK--SWLKKTEAWLDMKDAIVAAGLLWPTGVPFAKVLRDAVGVRDPEGE-VQKIKG 584

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
           E  PD+ L +YENVP  E + +Y  REV PH PDA+ID+           ++GYEI F R
Sbjct: 585 EPEPDSELRDYENVPLDEDVDEYLRREVLPHAPDAWIDRTK--------TKIGYEIPFTR 636

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            FY+YQP R L +IDAELK +EA+I  LL ++ 
Sbjct: 637 HFYEYQPPRPLPEIDAELKSLEAEIKLLLHKVT 669


>gi|297157212|gb|ADI06924.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 698

 Score =  730 bits (1884), Expect = 0.0,   Method: Composition-based stats.
 Identities = 268/721 (37%), Positives = 388/721 (53%), Gaps = 77/721 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +     LAN  W  A+ L GD+K +D+GKVILPFT+LRRLEC L PT+  V E    + 
Sbjct: 2   NSSKHTELANHAWSVADLLRGDYKQSDYGKVILPFTVLRRLECVLAPTKDKVLEVAARYQ 61

Query: 64  GSNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           G +I+ + F++  +G+SFYNTS Y+L  +   +++    L  Y  +FS NA+ + E +DF
Sbjct: 62  GQDINPDRFLRIASGHSFYNTSTYTLKAIAGDASHVAKYLNEYYGAFSPNAREVLERYDF 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP------------------DTVPDRVMSNIYEHL 162
           +  I RLE A LLY++   F+ ++L P                  + V +  M  I+E L
Sbjct: 122 AQQIKRLETANLLYQVVGRFADLDLRPVKRDADGKVVLGEDGKPVEIVSNHQMGYIFEEL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IRRF  + +E A +  TPR+V+ L   LL+ PD       PG +RT+ DP CGTGG L+ 
Sbjct: 182 IRRFAEQSNETAGEHFTPREVIRLMVNLLVAPDSDALAL-PGTVRTVMDPACGTGGMLSA 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   +        +       GQEL PE+ A+C + M+I+  +        +NI+ G++ 
Sbjct: 241 AEERITALNPDATVK----VFGQELNPESWAICRSDMMIKGQDP-------ENIKFGNSF 289

Query: 283 SKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKI 331
           S+D F+             F Y L+NPPFG +W+K KDAVE EH+  GE GRFG GLP+I
Sbjct: 290 SQDGFSRDDSRRDKNTPTTFDYLLANPPFGVEWKKVKDAVEDEHERLGESGRFGAGLPRI 349

Query: 332 SDGSMLFLMHLANKLEL---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           +DGS+LFL H+ +K++       GG R AIV + SPLF G A SGES IR+W+LE+D +E
Sbjct: 350 NDGSLLFLQHMISKMKPVDASGAGGSRIAIVFNGSPLFTGAAESGESRIRQWILEHDWLE 409

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDD 447
            IVALP  LF+ T I+TY W+LSNRK  +RRGKV L++A D W  +R   G KR+ ++D 
Sbjct: 410 GIVALPDQLFYNTGISTYFWVLSNRKARDRRGKVVLLDARDYWQKMRKSLGDKRKELSDQ 469

Query: 448 QRRQILDIYVS----------------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
              +I  +Y                   +     ++     FGYRRI V RPL++ F + 
Sbjct: 470 HISEITRLYTDALAVVDAAERGSGHDLADRAGKIKVFRNEDFGYRRITVERPLKLRFEVT 529

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
           +  L+ + A     + +      ++  L+P++ +   +        +   +  A  L   
Sbjct: 530 EETLSAITASKPIARATDAE--AFVAALRPLVGK--SWTTKSDAWIDLKDAVVAAGLLWP 585

Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHV 611
               F  A   A G +DP  +      G+  PD  L +YENVP  E +++Y  REV PHV
Sbjct: 586 TGAPFSKALREAVGVRDPEGEEQ-KAKGQPEPDPELRDYENVPLGEDVEEYLRREVLPHV 644

Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           PDA+ID            +VGYEI   R FY Y+P R L +IDA+LK +E++I  LL E+
Sbjct: 645 PDAWIDHTK--------TKVGYEIPVTRHFYVYKPPRPLAEIDADLKALESEIQALLGEV 696

Query: 672 A 672
            
Sbjct: 697 T 697


>gi|296106106|ref|YP_003617806.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99
           Alcoy]
 gi|295648007|gb|ADG23854.1| hypothetical protein lpa_00829 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 676

 Score =  727 bits (1877), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/690 (40%), Positives = 395/690 (57%), Gaps = 34/690 (4%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            E      +L+ F W  AE L GDFK +++GKVILPF +LRRL+C LE ++ AV + Y  
Sbjct: 3   NENNKKIQNLSTFSWSIAEILRGDFKQSEYGKVILPFVVLRRLDCILETSKDAVVKAYEN 62

Query: 62  FGGSNIDL--ESFVKVA---GYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKA 113
                 D   +  +  A   G   YN +  + S +      +   NL  YI SF+ + + 
Sbjct: 63  LPEGIDDHTKDMMLFSAVGGGLKVYNYNTLTFSKIRNQDPGDIHKNLLDYITSFNSSVRD 122

Query: 114 IF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           IF E F F+  + RL+  G+L+++   F  I+LHPD V +  M  ++E LIRRF    +E
Sbjct: 123 IFLEKFLFTDQLKRLKDGGILWQVFDLFCQIDLHPDNVSNMEMGYLFEDLIRRFSEISNE 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPR+V+ L   LLL  D        G+IRT+YDP CGTGG L      + +  S
Sbjct: 183 TAGEHFTPREVIRLIVDLLLINDADALA-GSGIIRTVYDPACGTGGMLALMEEAMKEYNS 241

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             ++      +GQEL PE+  +C + ML+            + I  G+TL++D    K+F
Sbjct: 242 KIRVE----LYGQELNPESFGICTSDMLVTGHNP-------EQIAFGNTLTEDAHKDKKF 290

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           HY LSNPP+G  W+K +D +++E  + G  GRFG GLP+ISDG +LFL H+ +K+     
Sbjct: 291 HYMLSNPPYGVDWKKYQDPIKQEAQEKGMDGRFGAGLPRISDGQLLFLQHMISKMRDD-E 349

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R  IV++ SPLF G AGSGESEIRRW+LEND +EAI+ALPTDLF+ T I TY+W+L+
Sbjct: 350 VGSRIGIVMNGSPLFTGGAGSGESEIRRWMLENDWVEAIIALPTDLFYNTGIQTYVWMLT 409

Query: 412 NRKTEERRGKVQLINAT--DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG-----K 463
           N+K + RRGKVQLI+A+    W S+R   G KRR I+D  R +I+ IY    NG     +
Sbjct: 410 NKKDKNRRGKVQLIDASSERFWQSMRKSLGSKRREISDHARSEIVKIYYEMLNGGGDWSE 469

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           FS++ D + FGYR I++ RPLR++F   K  L  L+ + T+ KLS + Q   L  L    
Sbjct: 470 FSKIFDRQEFGYREIRIERPLRLNFEGSKERLELLQQEKTFLKLSEIEQQELLTALNHNT 529

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            +   +   ++F K          L  K +     A +     KD  AD   D  G   P
Sbjct: 530 LK-QQFKNRDAFEKT--LKTTLNNLSFKLTAPLKKAILTTLSEKDETADVCCDAKGNPEP 586

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           DT+L ++E VP  E  ++Y  REV P V +A++D+   D  D ++GRVGYEINFNR+FY+
Sbjct: 587 DTDLRDHELVPLKEDWREYVEREVKPFVANAWVDENHKDATDGKVGRVGYEINFNRYFYR 646

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y P R + +ID ELK +E++IA LL+E+  
Sbjct: 647 YVPPRPVAEIDEELKQLESEIANLLKEVIA 676


>gi|296330134|ref|ZP_06872616.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673378|ref|YP_003865050.1| Type I restriction-modification system methyltransferase subunit
           (HsdM) [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296152723|gb|EFG93590.1| N-6 DNA methylase [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411622|gb|ADM36741.1| Type I restriction-modification system methyltransferase subunit
           (HsdM) [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 670

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/687 (37%), Positives = 377/687 (54%), Gaps = 43/687 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--G 64
           +     +FIW  AE L G +K  D+GK+ILP  +LRR +C LE T+  V  K   F    
Sbjct: 3   NFQDKVSFIWSIAEILRGPYKPEDYGKIILPLAVLRRFDCVLESTKEEVLAKAEQFATMK 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            +   +   +V+  +F+NTS+Y  + L   S N  +NL  YI  FS  A+ I + FDF  
Sbjct: 63  EDAREQILNRVSKQNFHNTSKYDFNKLLTDSDNIADNLRDYINGFSKVARDIMDHFDFDR 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +LE+  LLY   K FS I+LHP+TV +  M  ++E LIRRF    +  A D  TPR+
Sbjct: 123 QIDKLEQNNLLYLTIKRFSEIDLHPETVSNIEMGYVFEELIRRFNE--NAEAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L T LL   DDA     PG+ +TLYD   GTGG  + A  ++        +      
Sbjct: 181 VIRLMTHLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLLSQNPTAHLE----F 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PE++A+C A +LI+  +       ++NI+ G+TLSKD F   +F Y +SNPP+G
Sbjct: 237 FGQEINPESYAICKADLLIKGED-------ARNIRLGNTLSKDQFPRDKFDYLISNPPYG 289

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  +++EH+  G  GRFGPG P+ SDG +LFLMHL +K++        G R AI
Sbjct: 290 VDWKSYEKPIKEEHEKQGFNGRFGPGTPRTSDGQLLFLMHLLSKMKPVTAENPQGSRLAI 349

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIR++LLENDL+E IVALP DLF+ T IATY+WIL+N K    
Sbjct: 350 IMNGSPLFTGDAGSGESEIRKYLLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLH 409

Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKV+L+NA D    ++      R  I ++Q  +I+ +Y   +  ++ ++ D   FGY +
Sbjct: 410 KGKVRLVNAVDFSKKMKKSMGSKRNEITEEQINEIVRLYGDAQPNEYVKIFDNEDFGYAK 469

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQIYP---- 528
           I V RPLR++F +++  LAR+     +  L+   +      F ++  K +  QI      
Sbjct: 470 ITVERPLRLNFQVNEERLARVAEGKGFANLATSKKKGDAGHFEIEEGKKLQTQILYVLRT 529

Query: 529 ----YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                 +        +  +  K   +      + A +     KD  AD       +  PD
Sbjct: 530 LESETVYKNRDEFTKVLKDALKQAGITIGAPVLKAILAGLSEKDETADICMKNKTDIEPD 589

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + ENVP  E+I DYF REV PHVPDA+I        D+   ++GYEI F R FY+Y
Sbjct: 590 TDLRDTENVPLKENIHDYFAREVLPHVPDAWI--------DETKTKIGYEIPFTRQFYKY 641

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEM 671
              R   +I  E++ +EA+I   L+++
Sbjct: 642 TALRSSTEIMDEIRALEAEIVEQLKKV 668


>gi|110681176|ref|YP_684183.1| type I restriction-modification system DNA methylase, putative
           [Roseobacter denitrificans OCh 114]
 gi|109457292|gb|ABG33497.1| type I restriction-modification system DNA methylase, putative
           [Roseobacter denitrificans OCh 114]
          Length = 677

 Score =  725 bits (1873), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/680 (58%), Positives = 494/680 (72%), Gaps = 10/680 (1%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++      SLA+FIWKNA+DLWGDF+HT+FGK+ILPFTLLRRLEC L PTR  VRE   
Sbjct: 1   MSDAQTKNTSLADFIWKNADDLWGDFRHTEFGKIILPFTLLRRLECVLAPTREEVRETVK 60

Query: 61  AFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             G S ID++  ++   G+ FYNTS Y L +LG+T TR NLE YI+ FSDNA+ IFE FD
Sbjct: 61  NLGDSGIDMDVILRQQTGFPFYNTSNYDLRSLGATRTRANLEDYISQFSDNARVIFEQFD 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++TIAR+++AG+LYKIC+NF+ I+LHPDTVP+R MSN+YEHLIRRFG+EV+E AEDFMT
Sbjct: 121 FANTIARMDRAGVLYKICQNFAAIDLHPDTVPERTMSNVYEHLIRRFGAEVNEAAEDFMT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRDVVHLA  LLLDPDD LF E+PG+IRTLYDPTCGTGGFL+D M HV +    + I P+
Sbjct: 181 PRDVVHLAIELLLDPDDQLFIENPGLIRTLYDPTCGTGGFLSDGMEHVRNLQDRYSIAPV 240

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++P+GQELEPETHAVC+AGML++ LE+DP RDLSKNI  GSTLS D    ++FHYC+SNP
Sbjct: 241 IIPYGQELEPETHAVCLAGMLLKTLETDPGRDLSKNIALGSTLSADKHRPEKFHYCVSNP 300

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFGKKWEKD+  V +EHK  G  GRFGP LP++SDGSMLFL+HL +KLE P NGGGRAAI
Sbjct: 301 PFGKKWEKDQADVTREHKEQGFEGRFGPKLPRVSDGSMLFLLHLLSKLESPENGGGRAAI 360

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +LS SPLFNG AG GESEIRR LLE D++EAI+ALPT++FFRT I TY+WILSN K   R
Sbjct: 361 ILSGSPLFNGNAGQGESEIRRHLLEQDVVEAIIALPTEIFFRTGIGTYIWILSNDKPAHR 420

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINAT+++  +R   G KRR + + Q R I+ +Y   E  K S +L    FGYRR
Sbjct: 421 KGKVQLINATEMYEPMRKSEGNKRRRVGEQQTRDIVQMYADFEATKQSLILSAPDFGYRR 480

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           IKVLRPLR   ++   GLA L  +  W K +   ++ W  +    M     + W E+F K
Sbjct: 481 IKVLRPLRKKIVISAEGLATLADEKAWEKRTEAQRAGWTALFNDHMGAEEGWHWIEAFAK 540

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY-- 595
            ++K +       KA  + I AF  A G  DP  DPVTD  G+ IPD +LT++ENVP   
Sbjct: 541 NAVKRDADLG---KADVALIKAFRKALGVHDPELDPVTDKKGQIIPDDDLTDFENVPLAA 597

Query: 596 --LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
                I  Y   EV+PH  DAYID+ + DE D +IG  GYEINFNR+FY+Y P R L +I
Sbjct: 598 DGTADIHGYLAAEVTPHAHDAYIDETYRDESDGQIGIKGYEINFNRYFYEYLPPRDLDEI 657

Query: 654 DAELKGVEAQIATLLEEMAT 673
           DAELK VEA+IA +L E+A 
Sbjct: 658 DAELKAVEAEIAAVLAEVAG 677


>gi|114320943|ref|YP_742626.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227337|gb|ABI57136.1| N-6 DNA methylase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 725

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/741 (34%), Positives = 379/741 (51%), Gaps = 96/741 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L + IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV ++Y       +
Sbjct: 6   HDQLKSHIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKEAVLKQYEKLSAQGM 65

Query: 68  DLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
              +  K+ G        +  YNTS +    L   S N   NL +YI  FS  A+AIFE 
Sbjct: 66  PENAMEKLLGKAADPDRTHPLYNTSPFIFEKLLGDSENIAPNLVAYINGFSPTARAIFER 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F F+  I +L+ +  L+ I K  S ++LHPD + +  M  ++EHL+ RF  + +E A D 
Sbjct: 126 FKFTDQIEKLDASNRLFTIVKAMSEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDH 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   L+   +  ++   PG+ RT+YDP CGTGG L+++   + D  S   + 
Sbjct: 186 FTPREVIRLMANLVYTGEQDVYT--PGIYRTIYDPACGTGGMLSESEKFILDQNSQANL- 242

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRFH 293
                 GQE   E+ A+C + MLI+  +       + +I  G TL      D F GK+FH
Sbjct: 243 ---ALFGQEYNDESWAICCSDMLIKDED-------TSSIVLGDTLGDGKTRDGFEGKQFH 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFG +W+  K  VEKEHK  G  GRFG GLP I+DGS+LFL H+  K+     G
Sbjct: 293 YLLANPPFGVEWKDQKTVVEKEHKEMGFAGRFGAGLPAINDGSLLFLQHMIAKMHPYKEG 352

Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+
Sbjct: 353 DDDSVGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYV 412

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK--- 463
           W+++NRK  ERRGKVQLI+ T  +  ++     KR  + +DQ R +  +Y +  +G+   
Sbjct: 413 WLVTNRKAPERRGKVQLIDGTRFFQRMKKSLNNKRNEVTEDQIRDLTRLYGNNRDGETAE 472

Query: 464 -----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                       SR+ + R FG+ ++ V RPLRM+F      +ARL+    +  L+   +
Sbjct: 473 VRINGDTETRVVSRIFENREFGFLKVTVERPLRMNFEASPERIARLDEQTAFANLATSKK 532

Query: 513 --------------SFWLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKASKSFI 557
                             + ++ ++  + P G + +  V E+  +  AK   +K      
Sbjct: 533 RKNEAAAAKEIAEGQKQQEAIRALLASLAPKGQYTDRAVFEADLNAAAKVASLKLPVPIK 592

Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------------- 598
            A  NA G +DP A+   D  G   PD+ L + EN+P  E                    
Sbjct: 593 KAIFNALGERDPDAEICRDSKGRPEPDSELRDTENIPLPEGTQLPLPMQFGPDKPNDKLV 652

Query: 599 ------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
                 I  Y  REV PHV DA++        D    +VGYEI  NR FY Y+P R L +
Sbjct: 653 TAFRAEIDAYMAREVLPHVDDAWV--------DYSKTKVGYEIPINRHFYVYKPPRPLDE 704

Query: 653 IDAELKGVEAQIATLLEEMAT 673
           I+ E+  +E +IA LL  +  
Sbjct: 705 IEQEITELEGEIAGLLRGLVG 725


>gi|189499715|ref|YP_001959185.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189495156|gb|ACE03704.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 686

 Score =  722 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/695 (38%), Positives = 386/695 (55%), Gaps = 33/695 (4%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E      ++ +F+W  A+ L G FK ++F K+ILPFT+LRRL+ ALE T++ V E   
Sbjct: 1   MNEP-AKFNNVVSFLWAIADLLNGAFKKSEFQKIILPFTVLRRLDYALEKTKAKVLETEH 59

Query: 61  AFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
                 ++       + AGY+FYNTS+++  +L    TN   NL  Y+  FS N + IF 
Sbjct: 60  TLKAKGLENRHGQLCRAAGYAFYNTSKFNYESLLHDDTNLALNLRQYVMGFSPNVREIFA 119

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
            F+F  TI  L +  LLY + + F+     +L P ++ +  M  ++EHL+R+F   ++E 
Sbjct: 120 AFNFDDTIRDLGRVNLLYLLMERFNEKSKVDLRPASMSNHEMGYVFEHLLRKFNEALNEN 179

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +  TPRD + L   L+L   D+    + G+ RT+YD  CGTGG L+    HV      
Sbjct: 180 PGEHFTPRDAIRLMVDLVLM-LDSELAGTEGIPRTVYDCGCGTGGILSITKEHVLQINPQ 238

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K+      +GQEL P T A+  A MLI     +P    ++NI+ GSTLS D  +  RF 
Sbjct: 239 AKVF----LYGQELNPFTWAIARADMLI----LEPEGKDAENIKCGSTLSDDQLSDMRFD 290

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
               NPP+G +W KD DAV  E   G  GRFG G P+ SDG MLFL HL  ++  P    
Sbjct: 291 LQFVNPPYGYEWSKDYDAVTAEAARGFDGRFGAGTPRKSDGQMLFLQHLIARMNDPEESQ 350

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
               I+L+ SPLF G A SGESEIRRW++END +EAIVA+P  LF+ T I TY+W+LSNR
Sbjct: 351 SYIGIILNGSPLFTGGAASGESEIRRWIMENDWLEAIVAMPQQLFYNTGIGTYIWLLSNR 410

Query: 414 KTEERRGKVQLINAT--DLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           K  + +GKV L++A+  + W+ + ++ G KRR I +D ++ IL++   R+ G   ++ D 
Sbjct: 411 KPAKHKGKVMLVDASGEEFWSGMSKSLGSKRREITEDHKQAILNLVKVRKEGPHVKLFDT 470

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI------------ 518
             FGYR IKVLRPL++ F ++   LARL+A   +R L+   +    +             
Sbjct: 471 TDFGYREIKVLRPLKLRFTVNAESLARLDAQAAFRNLAVSKKKAAAEQKREEQEGLALQA 530

Query: 519 -LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
            ++  +Q +    +       +      K   +K     + A +   G +D  A+   D 
Sbjct: 531 EIRNTLQTLAGKTYTCRDKFTTALDAALKKAGLKLKAPVLKAILAGIGERDDAAEVCRDK 590

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
           +G   PDT+L + ENVP  E ++ YF REV+PHVPDA+ID  + D KD ++GRVGYEI F
Sbjct: 591 DGNPEPDTDLNDTENVPLKEKVETYFAREVTPHVPDAWIDPAYCDAKDGQVGRVGYEIPF 650

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           NR FY +QP R L  IDA+LK    +I  ++  + 
Sbjct: 651 NRHFYVFQPPRLLSAIDADLKTSTDRILNMIGGLT 685


>gi|288553770|ref|YP_003425705.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification
           system [Bacillus pseudofirmus OF4]
 gi|288544930|gb|ADC48813.1| N-6 DNA methylase (M) subunit of Type 1 restriction-modification
           system [Bacillus pseudofirmus OF4]
          Length = 670

 Score =  721 bits (1862), Expect = 0.0,   Method: Composition-based stats.
 Identities = 259/689 (37%), Positives = 375/689 (54%), Gaps = 43/689 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--G 64
           +     +FIW  AE L G +K  D+GKVILP  +LRR +C L+ T+  V      F    
Sbjct: 3   NFQDKVSFIWSIAEILRGPYKPEDYGKVILPLAVLRRFDCVLDSTKEEVLASAEKFASMN 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                    +VA  +F+NTS+Y  + L   S N  +NL  YI  FS  A+ I + FD   
Sbjct: 63  EEAREPILNRVAKQNFHNTSKYDFNKLLSDSDNIADNLRDYINGFSKTARDIMDHFDLER 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +LE   LLY   K FS I+LHP+ V +  M  I+E LIRRF    +  A D  TPR+
Sbjct: 123 QIDKLETNNLLYLTIKRFSEIDLHPEVVSNVEMGYIFEELIRRFNE--NAEAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L T LL   DDA     PG+ +TLYD   GTGG  + A  ++A      ++      
Sbjct: 181 VIRLMTHLLFLHDDASILTKPGLTQTLYDCAAGTGGMGSVAQEYLASVNFSAQLE----F 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+  E++A+C A +LI+  +       +KNI+ G+TLS D F   +F Y +SNPP+G
Sbjct: 237 FGQEINGESYAICKADILIKGAD-------AKNIRLGNTLSNDQFPYDKFDYLISNPPYG 289

Query: 303 KKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  +  EH+  G  GRFGPG P+ SDG  LFL++L +K++        G R AI
Sbjct: 290 VDWKSYQKPIVDEHEKQGFNGRFGPGTPRTSDGQFLFLLNLLSKMKPVTAENPQGSRLAI 349

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIR+++LENDL+E IVALP DLF+ T IATY+WIL+N K   R
Sbjct: 350 IMNGSPLFTGDAGSGESEIRKYVLENDLVEGIVALPNDLFYNTGIATYIWILTNNKAPLR 409

Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKV+L+NA D +  ++      R  I ++Q   I+ +Y   + G++ ++ D   FGY +
Sbjct: 410 KGKVELVNAVDFYKKMKKSMGSKRNEITEEQINNIVSLYGDFQEGEYVKIFDNEDFGYAK 469

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQI------ 526
           I V RPLR++F +++  + ++  +  +  L+   +        ++  K +  QI      
Sbjct: 470 ITVERPLRLNFQVNEERIVKITEEKGFMNLATSKKKGEAGLKEIEAGKELQTQIIKVLRN 529

Query: 527 --YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                 +        I  +  K  ++      + A +N    KD  ADP      E  PD
Sbjct: 530 LASDEIYKNREAFTKILKDAFKEAEITVGAPVLKAILNGLSEKDETADPCIKNKTEMEPD 589

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + ENVP  ESI DYF REV PHVPDA+I        D+   ++GYEI F R FY+Y
Sbjct: 590 TDLRDTENVPLRESIHDYFEREVLPHVPDAWI--------DETKTKIGYEIPFTRQFYKY 641

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +  R  Q+I  E++ +EA+IA  LE++  
Sbjct: 642 KALRGSQEIMEEIRVLEAEIAEQLEKVMG 670


>gi|299068120|emb|CBJ39335.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Ralstonia solanacearum CMR15]
          Length = 641

 Score =  720 bits (1859), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/671 (46%), Positives = 417/671 (62%), Gaps = 37/671 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +LA  IW  A+ L GDF+ ++FG+VILPF +LRRLEC LEPT+  V  +Y    GS+
Sbjct: 2   NQQNLAADIWNIADTLRGDFRQSEFGRVILPFAVLRRLECVLEPTKREVLAQYETVKGSS 61

Query: 67  IDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           IDL+  +   A  +FYNTS++SL+TLGST+TR NLE Y++ FS NA+ +FE F+F   + 
Sbjct: 62  IDLDLLLPATAKATFYNTSQFSLATLGSTSTRANLEDYVSKFSSNARQVFEHFEFGKWLE 121

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +LEKA LL+ + + FS  +LHP+T+ +  M   +EHLIR+F    ++ A +F TPRDVV 
Sbjct: 122 KLEKANLLFLVAQKFSVFDLHPETISNHEMGLAFEHLIRKFAESANDTAGEFFTPRDVVR 181

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L T L+   D        G+IRT+YD   GTGGFL+  +  V +     ++    +P+ Q
Sbjct: 182 LVTTLVFATDHDALTGD-GVIRTVYDCAAGTGGFLSTGIEQVNEWNPSARL----IPYAQ 236

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL PET+A+CVA  LI+  +       +KNI+ G+TLS D    +RF YCL+NPPFG KW
Sbjct: 237 ELNPETYAICVADKLIQGYD-------TKNIKLGNTLSTDQLRNERFDYCLANPPFGVKW 289

Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSS 362
           EK +  V+ EH N G  GRFGPGLP++ DGS+LFLMHL +K +     + G R  IVLS 
Sbjct: 290 EKVQKEVQAEHVNEGYGGRFGPGLPRVGDGSLLFLMHLLSKRKPVNANSKGTRIGIVLSG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLFNG A SGESEIRRW+LEND +EAIV LPTDLF+ T I TY+W+LSN KT ER+  V
Sbjct: 350 SPLFNGGAASGESEIRRWILENDWLEAIVGLPTDLFYNTGIGTYIWVLSNNKTPERKNLV 409

Query: 423 QLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT + + + ++ G KR+ ++++Q   I  I  +  +   S++     FGYRRI V 
Sbjct: 410 QLIDATGMHSPMQKSLGSKRKRLSEEQIADIARIQAAMSDNGVSKLFKTTDFGYRRITVE 469

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPLRM F      +A   A              +   L+ +             +   +K
Sbjct: 470 RPLRMRFEATDARVANFNAVTG---------DAYAAALENIRGTFKS-------IAALLK 513

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
           S   K    K +K+ +     A G KDP A P+ D  G  + D +L E+ENVP  E I +
Sbjct: 514 STGIK----KLTKAHLKELTTAMGIKDPDAQPMKDEKGNVMADPDLREFENVPLGEDIYE 569

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  +EV PHVPDA+ID+   DEKD E+G VGYEINFNR+FYQYQP R L DIDA+LK +E
Sbjct: 570 YLDKEVLPHVPDAWIDESKKDEKDGEVGIVGYEINFNRYFYQYQPPRALADIDADLKAIE 629

Query: 662 AQIATLLEEMA 672
           A+IA LL E+ 
Sbjct: 630 AEIAGLLGEVT 640


>gi|74318698|ref|YP_316438.1| type I restriction-modification system methyltransferase subunit
           [Thiobacillus denitrificans ATCC 25259]
 gi|74058193|gb|AAZ98633.1| type I restriction-modification system methyltransferase subunit
           [Thiobacillus denitrificans ATCC 25259]
          Length = 676

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/688 (36%), Positives = 370/688 (53%), Gaps = 42/688 (6%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  + S   L+NFIW  A+ L G ++   + +V+LP  +LRR +C LE T+ AV  KY  
Sbjct: 13  TAMSKSH-ELSNFIWSIADLLRGPYRPPQYERVMLPLVVLRRFDCVLESTKDAVLAKYAQ 71

Query: 62  FGGS---NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
           + G    +       K++G  F+N S  S   L     N   +L SYI  FS+N + IFE
Sbjct: 72  YQGKLEGDALDGVLNKISGQRFHNHSPLSFEKLKGDPDNAHLHLVSYINGFSENVRKIFE 131

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F+F + I R+ +  +L+ + K F  ++LHP  V +  M  ++E LIRRF  + +E A D
Sbjct: 132 RFEFGNEIERMREHNILFLVIKKFCEVDLHPGAVDNIEMGLLFEDLIRRFNEQANETAGD 191

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L  +LL   DD L    PG +R + DPTCGTGG L++   ++ +  S  ++
Sbjct: 192 HFTPREVIRLMVSLLFMHDDDLLS-KPGTVRKMLDPTCGTGGMLSETRKYLREHQSGARL 250

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +GQ+  P ++AV  + +L+R   ++     +  I+ G TL  D F G+RF Y L
Sbjct: 251 F----VYGQDFNPRSYAVAASDLLLR---TNLADAETSTIKFGDTLIDDQFPGERFDYFL 303

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352
           +NPPFG  W++ +  V +EH K G  GRFG G P+++DG++LFL H+ +K E        
Sbjct: 304 ANPPFGVDWKRQQKDVVREHEKQGFAGRFGAGTPRVNDGALLFLQHMVSKFEPVDPANNL 363

Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R AIV + SPLF G AGSGESEIR+W++END +EAIVA+P  +F+ T I TY+W+++
Sbjct: 364 DGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVAMPEQMFYNTGIGTYVWVVT 423

Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           NRK   RRG++QLI+  D W S+R   G KRR  +D     I+  Y    +   S++ D 
Sbjct: 424 NRKEARRRGRIQLIDGRDRWQSLRRSLGDKRREFSDAHITDIVREYGDMRDNATSKVFDN 483

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             FGY R+ + RPLR++F +      R                  L+ L+ + + I    
Sbjct: 484 ADFGYNRLTIERPLRLAFQITLERKERFLDACP----------ELLNDLQAIDKAIGREA 533

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV----NGEWIPDTN 586
             +            K    K     I AF  AF   +P+A+PV         E+ PD  
Sbjct: 534 SLDWNAIWKQAQLTLKERDSKWRAPQIKAFREAFTEINPKAEPVIAKKAGGKVEYEPDPK 593

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L ++ENVP  E ++ YF   V PHV DA+ID            +VGYEINFNR FY++  
Sbjct: 594 LRDFENVPLTEDVEAYFEHGVRPHVADAWIDHAK--------TKVGYEINFNRHFYRFTL 645

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMATE 674
            R L +IDA+LK  E +I  LL E+  E
Sbjct: 646 PRPLAEIDADLKRAEEEIVRLLREVTAE 673


>gi|260557401|ref|ZP_05829616.1| type I restriction-modification system, M subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|260409027|gb|EEX02330.1| type I restriction-modification system, M subunit [Acinetobacter
           baumannii ATCC 19606]
          Length = 761

 Score =  719 bits (1856), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/773 (36%), Positives = 407/773 (52%), Gaps = 116/773 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + + +A+FIW  A  L GDFK + +G++ILPFTLLRRLEC LE +++AV  ++ 
Sbjct: 1   MTNN--NFSQIASFIWSVANLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHE 58

Query: 61  AFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                N+  E+          G +F+NTS   LS +G ++ + NL +Y+ SFS +A+ IF
Sbjct: 59  KVSKLNLPEEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIF 118

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F      L+ A LLYK+ + F+  +L P  V +  M  ++E LIRRF    +E A 
Sbjct: 119 EYFNFIEFAGLLDDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNETAG 178

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD+V L TAL+   DD +  +  G+IRT+YDPT GTGGFL+  M ++ +   +  
Sbjct: 179 EHFTPRDIVRLTTALVFMEDDDVLTKD-GIIRTIYDPTAGTGGFLSSGMEYLHELNPNA- 236

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y 
Sbjct: 237 ---VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLAVDQFDYM 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNG 352
           LSNPPFG  W+K +  ++ EH+  G  GRFG GLP++SDGS+LFLMHL +K+        
Sbjct: 287 LSNPPFGVDWKKIEQDIKDEHEHKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSSES 346

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN
Sbjct: 347 GSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSN 406

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSR------------ 459
           +K  ER+GKVQLINA++L T +R   G KR  + +++   I   Y +             
Sbjct: 407 KKAAERKGKVQLINASNLSTKMRKSLGSKRNYLTENEIATITQNYGAFVAVDTLANDGET 466

Query: 460 --ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----------------- 500
             +    S++ D   FGYRR+ + RPLR+S  +  + +A L                   
Sbjct: 467 EQQKPFASKIFDNHEFGYRRVTIERPLRLSAQITDSAIAALRFAPKPFNAVMQSIDAQLG 526

Query: 501 --------------------------DITWRKLSPLH------------QSFWLDILKPM 522
                                        + +L                Q   ++  + +
Sbjct: 527 TAFGTAWTAESYGQLQDVALEVRAMIKAEFPELKEKDIKEVLDSKIWLFQKALMEKAEAL 586

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD------ 576
            + I    + +    + +     K   +K         ++A   K+P A+PV +      
Sbjct: 587 QEVIGTEQFDDFNQFDEVLKKALKQADIKLDAKEKKQLLDAITWKNPEAEPVINKVLKQA 646

Query: 577 ------------VNGEWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDK 618
                          E++ D +L + EN+         E I+DYF REV PHV DA+I+ 
Sbjct: 647 ENPLYGQFSYQGKVVEFVQDGDLRDAENIALNPKVSTTELIEDYFKREVQPHVADAWINA 706

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              DEKD EIG VGYEI FNR FY Y+P R L +IDA+L  V A+I  LL+E+
Sbjct: 707 DKRDEKDGEIGIVGYEIPFNRHFYVYEPPRDLSEIDADLDAVSAEIMQLLQEV 759


>gi|331650480|ref|ZP_08351552.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli M605]
 gi|331040874|gb|EGI13032.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli M605]
          Length = 781

 Score =  718 bits (1854), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/789 (36%), Positives = 403/789 (51%), Gaps = 134/789 (16%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + + + +A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE T+ AV  +      
Sbjct: 3   STNFSQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETTKDAVITEAKKVKA 62

Query: 65  SNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             +  E+          G +F+N S   LS +G    ++NLE+YI SFS +A+ IFE F 
Sbjct: 63  MKLPEEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHFK 122

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS  + +L  A LL+K+ + F+  +L+P+ V +  M  ++E LIRRF    +E A +  T
Sbjct: 123 FSEFVGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V+L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M  V     +     +
Sbjct: 183 PRDIVNLTTSLVFFDDDDALNKD-GIIRTIYDPTAGTGGFLSSGMEFVHQQNPNA----V 237

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  +          I+ G+TLS D    ++F Y LSNP
Sbjct: 238 MRAFGQELNPESYAICKADMLIKGQDVSL-------IKLGNTLSNDQLPAEKFDYMLSNP 290

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    +GGGR  I
Sbjct: 291 PFGVDWKKIETDINDEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIGI 350

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+WILSN+K  ER
Sbjct: 351 ILNGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWILSNKKAPER 410

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE----------------- 460
           +GKVQLI+ ++L   +R   G KR I+ ++    I   +   E                 
Sbjct: 411 KGKVQLIDGSNLCGKMRKSLGSKRNILGEEDIGLITRTFGDFEPVATTTLAALGLEKAPE 470

Query: 461 -----------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--- 500
                                S++     FGYRRI V RPLR+S  +    +A L     
Sbjct: 471 QKSSRGRQPATTKTEAAKTFASKVFHSTDFGYRRITVERPLRLSAQISDHAIATLRFAPK 530

Query: 501 -----------------------------------------DITWRKLSPLHQSFWLDIL 519
                                                    ++  +++  L  S      
Sbjct: 531 PFNAPMAQLYDAFAFQWQDGNYGDLTAVESEARAILKADFSELKEKQIKDLLDSKLWLAQ 590

Query: 520 KPMMQQI-------------YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
           + +M++                    +    +       +T  VK        FI+A  R
Sbjct: 591 RGLMEKARRIQAAMGMQAGGKDTVSNDFNQFQLTLKEALRTAGVKLDAKENKQFIDAITR 650

Query: 567 KDPRADPVT------------------DVNGEWIPDTNLTEYENVPYL------ESIQDY 602
           K+P A+PV                       E+ PD +L + ENVP        E I+ Y
Sbjct: 651 KNPDAEPVVSKVLKEAAQPLYGACEYNGKVVEFEPDGDLRDNENVPLNPAVSTSELIEGY 710

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F  EV PHV DA+I+    D KD +IG VGYEI FNR FY YQP R L++IDA+L  V A
Sbjct: 711 FKAEVLPHVADAWINADKRDAKDGDIGIVGYEIPFNRHFYVYQPPRPLEEIDADLDAVSA 770

Query: 663 QIATLLEEM 671
           +I  LL+E+
Sbjct: 771 EIMKLLQEV 779


>gi|332974852|gb|EGK11767.1| N-6 DNA methylase [Psychrobacter sp. 1501(2011)]
          Length = 801

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/804 (35%), Positives = 404/804 (50%), Gaps = 146/804 (18%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  + ++ +LA FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+   
Sbjct: 8   TRQSQTSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQK 67

Query: 62  FGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                ++ E+       K  G +FYNTS  +L+ +G ++   NL  YI SFS +A+ IF 
Sbjct: 68  VSAMGLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFA 127

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F   + +L  A LLYK+ + F  I+L P+ V +  M  ++E LIRRF    +E A +
Sbjct: 128 HFKFEEFVGQLNDANLLYKVVQKFMNIDLSPEAVSNYEMGLVFEELIRRFAESSNETAGE 187

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD       G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 188 HFTPRDIVRLTTSLVFMEDDDAL-IKDGIIRTIYDPTAGTGGFLSSGMEYVLELNPNA-- 244

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  E          I+ G+TLS D     +F Y L
Sbjct: 245 --VMRAFGQELNPESYAICKADMLIKGQEV-------SRIKLGNTLSDDQLPADKFDYML 295

Query: 297 SNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352
           SNPPFG  W+K    ++ EH+  G  GRFGPG P++SDGS+LFL+HL +K+    +    
Sbjct: 296 SNPPFGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPGQSHSNA 355

Query: 353 ------------GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                       G R  I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+F+ 
Sbjct: 356 SLEAPSNDTAITGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPTDMFYN 415

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSR 459
           T IATY+W+L+N K  ER+GKVQLI+ T+L++ +R   G KR  ++++  + I   +   
Sbjct: 416 TGIATYVWVLTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITRTFGDF 475

Query: 460 E-----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
           E                                 S++ D   FGYRR+ + RPLR+S  +
Sbjct: 476 EVVDARELDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLRLSAQM 535

Query: 491 DKTGLARLEADI-------------------------------------------TWRKL 507
               +  L                                                + +L
Sbjct: 536 SDEAIESLRYAERTYDLVMPALYEKFGEQWTEDTYGEFGDLSSDIQVEARAMIKADFSEL 595

Query: 508 SPLHQSFWLD------------ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
                   LD              K + Q+I    + +    + +     K   +  S  
Sbjct: 596 KEKQIKEVLDSKLWREQLAVMNAAKTLQQEIGTEQFDDYNQFDVVFKQAIKDTGLDLSAK 655

Query: 556 FIVAFINAFGRKDPRADPV-----------------TDVNG-----EWIPDTNLTEYENV 593
                +NA   K+P A+ V                 TD  G     E+  D++L +YEN+
Sbjct: 656 DRKQILNAVTWKNPEAERVVKKSVKEANPLYGAFEITDSKGKAKIVEFETDSDLRDYENI 715

Query: 594 PYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
           P        E I+ YF REV PHV DA+ID    D  D+EIG VGYEI FNR FY Y+P 
Sbjct: 716 PLNPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGIVGYEIPFNRHFYVYEPP 775

Query: 648 RKLQDIDAELKGVEAQIATLLEEM 671
           R L +IDA+L  V A+I  LL E+
Sbjct: 776 RPLSEIDADLDKVSAEIMQLLSEV 799


>gi|308171853|ref|YP_003915183.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307743225|emb|CBQ74048.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 653

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/672 (38%), Positives = 365/672 (54%), Gaps = 33/672 (4%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A FIW  A+ L G+FK   +G  ILPFT+LRRL+  L  T+S V E         + +  
Sbjct: 5   ATFIWGIADLLRGNFKAHQYGDFILPFTVLRRLDSVLADTKSKVLEVVAEADAKGLSVRP 64

Query: 72  FVKVAG----YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            +        +SFYNTS+Y L TL   + N R NL SYI +FS+N + IF  +     I 
Sbjct: 65  VLLKTKAGHQHSFYNTSQYDLGTLIGDAENLRENLLSYINAFSENVRDIFVKYKIEDRIE 124

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LE+  LL  + + F+ ++LHP  V +  M +I+E LIR+F    +E A +  TPR+V+ 
Sbjct: 125 ELEENNLLLLVIQRFAEVDLHPKHVSNDKMGHIFEELIRKFAEASNETAGEHFTPREVIE 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL + DD        ++R++YDPT GTGG L+ A +H+       ++       GQ
Sbjct: 185 LMVDLLFENDDEAL-RDEDIVRSVYDPTAGTGGMLSVAEDHLTAMNPRARL----TLAGQ 239

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL P+++A+C A M+I+    D        I    TL  D   G  F+YCLSNPPFG  W
Sbjct: 240 ELNPQSYAICKADMVIKGQSVDA-------IVNDDTLRHDGHAGTTFNYCLSNPPFGVDW 292

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGGRAAIVLSS 362
           +K + AV +EH + G  GRFGPGLP++SDGSMLFL+HL +K+  P   + GGRAAIVL+ 
Sbjct: 293 KKQEKAVREEHAEKGFAGRFGPGLPRVSDGSMLFLLHLISKMREPAHGSAGGRAAIVLNG 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGES IR+W+LE D +EAI+ALPTD+F+ T I+TY+W+LS  K+ ERR KV
Sbjct: 353 SPLFTGGAGSGESNIRKWILERDYLEAIIALPTDMFYNTGISTYIWVLSKEKSPERRNKV 412

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QL++ + L+  +R   G KR  +  +  + I+ +Y        S++ +   F YR I V 
Sbjct: 413 QLVDGSKLFRKMRKGLGSKRNELGPEDIQAIVRLYGDFTETDQSKIFNTTDFFYRTITVE 472

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPL+++F      +    A     KL+        D+   +        W       +  
Sbjct: 473 RPLKLNFATTTERIDTALAAKPLGKLTA---DAVADLRTALDSMDATVLWKNRDNFTTGL 529

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K   V+ S   + A I    ++D  AD  T    +  PD  L + ENVP+ E I  
Sbjct: 530 KRTLKATGVELSTPQLKALIAGLSKRDDTADVCTGPKSKIEPDAELRDTENVPWNEDIHA 589

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  RE+ P VPDA++        D+E  + G EI F R FYQY P R L++IDA+L  V 
Sbjct: 590 YIEREIKPFVPDAWL--------DEEKTKEGCEIPFTRHFYQYIPPRPLEEIDADLDAVL 641

Query: 662 AQIATLLEEMAT 673
            +I   LE++  
Sbjct: 642 GRIRARLEQVKA 653


>gi|331666003|ref|ZP_08366897.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli TA143]
 gi|331057054|gb|EGI29048.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Escherichia coli TA143]
          Length = 781

 Score =  714 bits (1843), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/789 (35%), Positives = 404/789 (51%), Gaps = 134/789 (16%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + + + +A F+W  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  +      
Sbjct: 3   STNFSQIAAFLWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLETSKDAVIAEAQKVKA 62

Query: 65  SNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             +  E+          G +F+N S   LS +G    ++NLE+YI SFS +A+ IFE F 
Sbjct: 63  MKLPEEAQEKMILRATNGLTFFNASAMDLSKMGQNGIQDNLENYIQSFSSDAREIFEHFK 122

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS  + +L  A LL+K+ + F+  +L+P+ V +  M  ++E LIRRF    +E A +  T
Sbjct: 123 FSEFVGQLADANLLFKVVQIFAKADLYPEHVTNHDMGLVFEELIRRFAESSNETAGEHFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V+L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V     +     +
Sbjct: 183 PRDIVNLTTSLVFFDDDDALNKD-GIIRTIYDPTAGTGGFLSSGMEYVHKQNPNA----V 237

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  +          I+ G+TLS D    ++F Y LSNP
Sbjct: 238 MRAFGQELNPESYAICKADMLIKGQDVSL-------IKLGNTLSNDQLPAEKFDYMLSNP 290

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  +  EHK  G  GRFGPGLP++SDGS+LFL+HL +K+    +GGGR  I
Sbjct: 291 PFGVDWKKIETDINNEHKLKGADGRFGPGLPRVSDGSLLFLLHLISKMRDAKSGGGRIGI 350

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR++LE DL+E I+ALPTD+F+ T IATY+W+LSN+K  ER
Sbjct: 351 ILNGSPLFTGGAGSGESEIRRYILEADLLEGIIALPTDMFYNTGIATYVWVLSNKKAPER 410

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE----------------- 460
           +GKVQLI+ ++L   +R   G KR I+ ++    I   +   E                 
Sbjct: 411 KGKVQLIDGSNLCGKMRKSLGSKRNILGEEDIGLITRTFGDFEPVATTTLAALGLEKAPE 470

Query: 461 -----------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--- 500
                                S++     FGYRRI V RPLR+S  +    +A L     
Sbjct: 471 QKSSRGRQPATTKTEAAKTFASKVFHSTEFGYRRITVERPLRLSAQISDDAIATLRFAPK 530

Query: 501 -----------------------------------------DITWRKLSPLHQSFWLDIL 519
                                                    ++  +++  L  S      
Sbjct: 531 PFNAPMAQLYDAFAFQWQDGNYGDLTAVESEARAILKADFSELKEKQIKDLLDSKLWLAQ 590

Query: 520 KPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
           + +M++      A             +    +       +T  VK        FI+A  R
Sbjct: 591 RGLMEKARRIQAAMRMLAGGKETVSNDFNQFQLTLKEALRTAGVKLDAKENKQFIDAITR 650

Query: 567 KDPRADPVT------------------DVNGEWIPDTNLTEYENVPY------LESIQDY 602
           K+P A+PV                       E+  D +L + ENVP        E I+DY
Sbjct: 651 KNPDAEPVISKVLKEAPQPLYGAFEYHGKVVEFESDGDLRDNENVPLNPAVSTNELIEDY 710

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F  EV PHV DA+I+    D KD +IG VGYEI FNR FY Y P R L++IDA+L  V A
Sbjct: 711 FKAEVLPHVADAWINADKRDAKDGDIGIVGYEIPFNRHFYVYTPPRPLEEIDADLDAVSA 770

Query: 663 QIATLLEEM 671
           +I  LL+E+
Sbjct: 771 EIMKLLQEV 779


>gi|294637840|ref|ZP_06716111.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Edwardsiella tarda ATCC
           23685]
 gi|291089014|gb|EFE21575.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Edwardsiella tarda ATCC
           23685]
          Length = 798

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/798 (36%), Positives = 409/798 (51%), Gaps = 141/798 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 13  MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 70

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  E+     ++ +G SF+NTS+  L  +G  + + NLE+YI +FS +A+ IFE
Sbjct: 71  ELKTSPLPEEAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLENYIQAFSPDAREIFE 130

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 131 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 190

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 191 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 247

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 248 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 298

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 299 SNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGS 358

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 359 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 418

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK----- 463
           LSN+K  ER+GKVQLI+AT+L   +R   G KR ++ DD  + I   +   +  +     
Sbjct: 419 LSNQKAAERKGKVQLIDATNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVVETTTLE 478

Query: 464 -----------------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 479 ELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 538

Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510
           +A L                                             A++  +++  L
Sbjct: 539 IATLRFAPKPFNAPMERLYDEFAAQWQAETYGDFSGLEAEARAIIKAEFAELKEKQIKDL 598

Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557
             S      + +M++      A             +    +       KT  VK      
Sbjct: 599 LDSKLWLAQRALMEKAQQIQTALATQAGGKTRVSNDFNQFKLTLKEAIKTAGVKLDAKEN 658

Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES- 598
             FI+A   K+P A+PV                   G   E+  D  L + ENVP   + 
Sbjct: 659 KQFIDAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAL 718

Query: 599 -----IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
                I++Y   EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L++I
Sbjct: 719 STSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLEEI 778

Query: 654 DAELKGVEAQIATLLEEM 671
           DA+L  V A+I  LL+E+
Sbjct: 779 DADLDAVSAEIMKLLQEV 796


>gi|91776954|ref|YP_546710.1| N-6 DNA methylase [Methylobacillus flagellatus KT]
 gi|91710941|gb|ABE50869.1| N-6 DNA methylase [Methylobacillus flagellatus KT]
          Length = 728

 Score =  710 bits (1832), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/745 (34%), Positives = 382/745 (51%), Gaps = 99/745 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+  V ++Y      N
Sbjct: 5   THEVLKSTIWEIANRLRGPYRPPQYRLVMLPMVVLRRLDCVLEPTKDKVLKQYEKLTAQN 64

Query: 67  IDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
           +   +  ++ G        +  YNTS ++   L     N   NL SYI  FS  A+ IFE
Sbjct: 65  MPESAMERLLGRAADPKRNHPLYNTSPFTFERLLGDPENIAPNLVSYINGFSPTARTIFE 124

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F F+  I +L+ +  L+ I K  + ++LHPD + +  M  ++EHL+ RF  + +E A D
Sbjct: 125 RFKFTDQIEKLDASNRLFTIVKAMADVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGD 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+V+ L   L+   +  ++   PG+ RT+YDP CGTGG L+++   + D      +
Sbjct: 185 HFTPREVIRLMANLVYTGEKDVYT--PGIFRTIYDPACGTGGMLSESEKFILDQNRQANL 242

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRF 292
                  GQE   E+ A+C + MLI+  +       + +I  G TL      D F G++F
Sbjct: 243 ----ALFGQEYNDESWAICCSDMLIKDED-------TSSIVLGDTLGDGKTRDGFEGEKF 291

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           HY L+NPPFG +W+  K  VEKEHK  G  GRFG GLP I+DGS+LFL H+ +K+     
Sbjct: 292 HYMLANPPFGVEWKDQKTIVEKEHKELGFAGRFGAGLPAINDGSLLFLQHMISKMHPYKA 351

Query: 352 G-----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           G     G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY
Sbjct: 352 GDENAVGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIYTY 411

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-- 463
           +W+++NRK  ERRGKVQLI+ T     ++     KR  I +DQ R++  +Y +  +G+  
Sbjct: 412 VWLVTNRKAPERRGKVQLIDGTRFCQRMKKSLNNKRHEITEDQIRELTRLYGNFRDGETA 471

Query: 464 ---------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
                           SR+ + R FG+ ++ V RPLRM+F      +ARL+A   +  L+
Sbjct: 472 EVVIDHKTGEKETRVVSRIFENREFGFLKVTVERPLRMNFEASAERIARLDAQSAFANLA 531

Query: 509 PLHQSF--------------WLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKVKAS 553
              +                  D ++ ++  +   G + +  V E+     AK   VK +
Sbjct: 532 TSKKRKDDKAAAREIAAGREQQDAIRNLLVSLEAKGRYRDRKVFEADLDKAAKAAGVKLA 591

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES--------------- 598
                A   A G +DP A+   D  G   PD+ L + EN+P                   
Sbjct: 592 GPIKKAIFAALGERDPEAEICRDAKGRPEPDSELRDTENIPLPAGIVLPLPMDFGPDKPN 651

Query: 599 ----------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
                     I  Y  +EV PHVPDA++D            +VGYEI  NR FY Y+P R
Sbjct: 652 DRLIESFRDVIDAYMAKEVLPHVPDAWVDYDK--------TKVGYEIPINRHFYVYKPPR 703

Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673
            LQ+I+A+++ +E +IA LL+ +  
Sbjct: 704 PLQEIEADIRQLEGEIADLLKGLLA 728


>gi|290512140|ref|ZP_06551507.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55]
 gi|289775135|gb|EFD83136.1| type I restriction enzyme M protein [Klebsiella sp. 1_1_55]
          Length = 795

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/798 (36%), Positives = 406/798 (50%), Gaps = 141/798 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 10  MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 67

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  ++     ++ +  SF+NTS+  L  +G  + + NLESY+ +FS +A+ IFE
Sbjct: 68  ELKTSPLPEDAKEKFLLRASTLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFE 127

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 128 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 187

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD      PG+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 188 HFTPRDIVRLTTSLVFMEDDEALT-QPGIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 244

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 245 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPLDQFDYML 295

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 296 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDGT 355

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 356 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 415

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460
           LSN+K  ER+GKVQLI+ T+L   +R   G KR ++ DD  + I   +   E        
Sbjct: 416 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGDDDIKLITKTFGDFEVVDATTLE 475

Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 476 ELGLEKAAEQKSSRGRQPATAKTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 535

Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510
           +A L                                             A++  +++  L
Sbjct: 536 IATLRFAPKPFNAPMERLYDEFASQWHEENYGDFSELEAEARAIIKAEFAELKEKQIKDL 595

Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557
             S      + +M++      A             +    +       KT  VK      
Sbjct: 596 LDSKLWLSQRGLMEKAQQIQTALGTQAGGKTLVSNDFNQFQLPLKGAIKTAGVKLDAKEN 655

Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL--- 596
             FI+A   K+P A+PV                   G   E+  D  L + ENVP     
Sbjct: 656 KQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPTV 715

Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
              + I++YF  EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L +I
Sbjct: 716 STSDLIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLSEI 775

Query: 654 DAELKGVEAQIATLLEEM 671
           DA+L  V A+I  LL+E+
Sbjct: 776 DADLDAVSAEIMKLLQEV 793


>gi|255320276|ref|ZP_05361461.1| N-6 DNA methylase [Acinetobacter radioresistens SK82]
 gi|255302715|gb|EET81947.1| N-6 DNA methylase [Acinetobacter radioresistens SK82]
          Length = 761

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 278/769 (36%), Positives = 404/769 (52%), Gaps = 114/769 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             + + +A+FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE +++AV  ++     
Sbjct: 3   NNNFSQIASFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKAAVLAEHEKVSK 62

Query: 65  SNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            N+  E+          G +F+NTS   LS +G ++ + NL +Y+ SFS +A+ IFE F+
Sbjct: 63  LNLPEEAQEKLLLRATNGLAFFNTSPMDLSKMGQSDIKANLSTYVQSFSKDAREIFEYFN 122

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      L  A LLYK+ + F+  +L P  V +  M  ++E LIRRF    ++ A +  T
Sbjct: 123 FIEFAGLLNDANLLYKVVQKFATTDLSPKNVSNHDMGLVFEELIRRFAEGSNDTAGEHFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V L TAL+   DD +  +  G+IRT+YDPT GTGGFL+  M ++ +   +     +
Sbjct: 183 PRDIVRLTTALVFMEDDDVLTKD-GIIRTIYDPTAGTGGFLSSGMEYLHELNPNA----V 237

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  +          I+ G+TLS D  +  +F Y LSNP
Sbjct: 238 MRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLSVDQFDYMLSNP 290

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRA 356
           PFG  W+K +  ++ EH+  G  GRFG GLP++SDGS+LFLMHL +K+        G R 
Sbjct: 291 PFGVDWKKIEQDIKDEHEQKGFDGRFGAGLPRVSDGSLLFLMHLISKMRDASSTESGSRI 350

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALP D+F+ T IATY+W+LSN+K  
Sbjct: 351 GIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPNDMFYNTGIATYIWVLSNKKDA 410

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSR-------ENGK----- 463
           ER+GKVQLINA++L T +R   G KR  + + +   I   Y          ++G+     
Sbjct: 411 ERKGKVQLINASNLSTKMRKSLGSKRNYLTETEIATITQNYGDFVAVDTLAQDGETEQQK 470

Query: 464 --FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA--------------------- 500
              S++     FGYRR+ + RPLR+S  +  + +  L                       
Sbjct: 471 PFASKIFASHEFGYRRVTIERPLRLSAQITDSAITALRFAPKPLNAVMQSIDAQLDTAFG 530

Query: 501 ----------------------DITWRKLSPLH------------QSFWLDILKPMMQQI 526
                                    + +L                Q   ++  K +   I
Sbjct: 531 TAWTAETYGQLQDVALEVRALIKAEFPELKEKDIKEVLDSKIWLFQKALMEKAKALQDVI 590

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD---------- 576
               + +    + +     K   +K         ++A   K+P A+PV +          
Sbjct: 591 GTEQFDDFNQFDDVLKKALKQTDIKLDAKEKKQLLDAITWKNPEAEPVINKVLKQAENPL 650

Query: 577 --------VNGEWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDKIFID 622
                      E++ D +L + EN+         E I+DYF REV  HVPDA+I+    D
Sbjct: 651 YGQFSYQGKVVEFVQDADLRDAENIALNPKVSTTELIEDYFKREVQLHVPDAWINADKRD 710

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EKD EIG VGYEI FNR FY YQP R L +IDA+L  V A+I  LL+E+
Sbjct: 711 EKDSEIGIVGYEIPFNRHFYVYQPPRDLSEIDADLDAVSAEIMHLLQEV 759


>gi|283787022|ref|YP_003366887.1| Type I restriction-modification system, methylase (M) subunit
           [Citrobacter rodentium ICC168]
 gi|282950476|emb|CBG90139.1| putative Type I restriction-modification system, methylase (M)
           subunit [Citrobacter rodentium ICC168]
          Length = 786

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/798 (36%), Positives = 407/798 (51%), Gaps = 141/798 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 1   MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 58

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  ++     ++ +G SF+NTS+  L  +G  + + NLESY+ +FS +A+ IFE
Sbjct: 59  ELKTSPLPEDAKEKFLLRASGLSFFNTSKMDLGKMGQNDIKANLESYVQAFSPDAREIFE 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 178

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSAGMEYVHELNPNA-- 235

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 236 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 286

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 287 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGT 346

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 406

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460
           LSN+K  ER+GKVQLI+ T+L   +R   G KR ++ +D  + I   +   +        
Sbjct: 407 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFKVVDATTLE 466

Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 467 ELGLEKAAEQKSSRGRQPATAKTEATKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526

Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510
           +  L                                             A++  +++  L
Sbjct: 527 ITTLRFAPKPFNAPMERLYDEFAAQWQEETYGDFSELEAEARAIIKAEFAELKEKQIKDL 586

Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557
             S      + ++++      A             +    +       KT  VK      
Sbjct: 587 LDSKLWLAQRALLEKAQQIQAALGTQAGGKTLVSNDFNQFQMTLKGAIKTAGVKLDAKEN 646

Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL--- 596
             FI+A   K+P A+PV                   G   E+  D  L + ENVP     
Sbjct: 647 KQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAV 706

Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
              + I++YF  EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L++I
Sbjct: 707 STSDLIENYFKAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLEEI 766

Query: 654 DAELKGVEAQIATLLEEM 671
           DA+L  V A+I  LL+E+
Sbjct: 767 DADLDAVSAEIMKLLQEV 784


>gi|114778242|ref|ZP_01453114.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551489|gb|EAU54044.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Mariprofundus
           ferrooxydans PV-1]
          Length = 781

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/791 (36%), Positives = 397/791 (50%), Gaps = 135/791 (17%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  +LA +IW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  ++    
Sbjct: 1   MSETPNNLAAYIWSLADLLRGDFKQSQYGRIILPFTLLRRLECVLEVSKEAVLAEHARIQ 60

Query: 64  GSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           G  +  E+     +K AG SF+NTS+  LS LG +  ++NLESYI  FS +A+ IFE F 
Sbjct: 61  GMGLPEEAQEKFLLKAAGLSFFNTSKMDLSKLGESGIKDNLESYIQGFSRDAREIFEHFK 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+  I +L  A LLYKI +     +L P  + +  M  ++E LIRRF    +E A +  T
Sbjct: 121 FTEFIGQLSDANLLYKIVQKVRLTDLSPAAISNHDMGKVFEELIRRFAESSNETAGEHFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+VHL T+L+   DD      PG+IRT+YDPT GTGGFL++ M +V           +
Sbjct: 181 PRDIVHLTTSLVFMEDDDALT-KPGIIRTIYDPTAGTGGFLSEGMEYVEKLNPQA----V 235

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQEL PE++A+C A MLI+  +         NI+ G+TLS D     +F Y LSNP
Sbjct: 236 MRAYGQELNPESYAICKADMLIKGQDV-------SNIKLGNTLSGDQLYADKFDYMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG----- 353
           PFG  W+K +  ++ EH   G  GRFGPGLP++SDGS+LFL+HL +KL      G     
Sbjct: 289 PFGVDWKKIEKEIKDEHAIKGFDGRFGPGLPRVSDGSLLFLLHLISKLRPNEGDGHGRPS 348

Query: 354 -----------GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                      GR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T 
Sbjct: 349 VAGGTTPGATGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTG 408

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE- 460
           IATY+W+LSN+K  ER+GKVQLIN  +L   +R   G KR  ++DD    I   + + E 
Sbjct: 409 IATYVWVLSNKKAAERKGKVQLINGVNLCGKMRKSLGSKRNEMSDDDIATITRAFGAFEV 468

Query: 461 ----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                                           S++     FGYRRI + RPLR SF    
Sbjct: 469 IDARELNKPAEQKSNRGRQSENPKSETPKTFSSKIFASHEFGYRRITIERPLRESFRFSD 528

Query: 493 TGLARLE-----------------------------------------------ADITWR 505
             +  L                                                 +   +
Sbjct: 529 DRIETLRYAPGAPNAAMQWIYGEYGSEWGVEEYGDLTVHEEEIRNRIKSHFAALKEKQIK 588

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            L           +    + +      +     +      K   +K   +      +A  
Sbjct: 589 DLLDRKTWLAQRAIMQKAKALQQAIGTDQHDDMNTYDAMLKKSGIKLDATEKKQITSAVS 648

Query: 566 RKDPRADPVTDV----------------NG---EWIPDTNLTEYENVPY------LESIQ 600
            K+P A  V                   +G   E+ PD++L + ENVP        E+ +
Sbjct: 649 WKNPEAAKVIKKVHKSAEPNAIYGLFEVDGEVVEYKPDSDLRDNENVPLDPSRPVNETNE 708

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF +EV P+V DA+ID    D KD EIG VGYEI FNR FY YQP R L +IDA+L  V
Sbjct: 709 AYFAKEVQPYVLDAWIDACKRDAKDGEIGIVGYEIPFNRHFYIYQPPRDLAEIDADLDKV 768

Query: 661 EAQIATLLEEM 671
            A+I  LL+E+
Sbjct: 769 SAEIMQLLQEV 779


>gi|126462619|ref|YP_001043733.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126104283|gb|ABN76961.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 611

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/672 (38%), Positives = 364/672 (54%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L+ F+W  A+ L GD+K +D+GKVILPFT+LRR++C L PT+ AV  +Y       
Sbjct: 2   NQQDLSAFLWSVADLLRGDYKQSDYGKVILPFTVLRRIDCVLAPTKEAVLAEYKIRKEQG 61

Query: 67  IDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           +    F++  +G +FYN S + L  L     N   NL +YI  FS   + IF+ F+F + 
Sbjct: 62  MPPAPFLRKASGQTFYNASRFDLGKLMGDQDNIALNLRAYIQGFSPEVRDIFDHFEFDTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL KAGLLY + + F+   LHPD V +  M  ++E LIRRF    +E A +  TPR+V
Sbjct: 122 IDRLAKAGLLYLVTEKFAKAPLHPDRVTNHQMGLVFEELIRRFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DDA+    PG++RT+YDPT GTGG L+ A  ++ D          +   
Sbjct: 182 IRLMVNLIFVEDDAVLS-KPGVVRTIYDPTAGTGGMLSVAEEYLTDMNPAA----SVALS 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         NI  G+TLS D   G+ F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------GNIAFGNTLSDDFHPGETFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V  EH+  G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVL+ 
Sbjct: 290 EWKKVEKVVRAEHEQKGHAGRFGPGLPRVSDGSLLFLMHLLSKMRPAAQGGCRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR +LE+DL+EAIVALPTD+F+ T IATY+WIL+NRK E R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRHVLESDLVEAIVALPTDMFYNTGIATYVWILTNRKAEARKGKV 409

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+ +  W  +R   G KR+ + D     I  ++        +R+ D        + V 
Sbjct: 410 QLIDGSSFWQKMRKSLGSKRKQMGDADIATITRLFGGFIEADLARVFDAAGKEVGTVVV- 468

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                              +    KL+PL +          ++    +G+    V+  ++
Sbjct: 469 ---------TPGEAPPTPPEGGRVKLAPLSR----------IRPNESFGYRTITVERPLR 509

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
             + + +  +  K                      + G+  PD  L + ENVP  E +  
Sbjct: 510 DEQGRVVLGQKGK----------------------LKGKPQPDPALRDTENVPLTEDVAA 547

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA I        D E  +VGYEI FNR FY ++P R L  IDA+L  V 
Sbjct: 548 YFAREVLPHAPDACI--------DPEKTKVGYEIPFNRHFYVFEPPRPLAQIDADLAEVT 599

Query: 662 AQIATLLEEMAT 673
            +I  +L  ++ 
Sbjct: 600 TRIQAMLAGLSA 611


>gi|327396329|dbj|BAK13751.1| type I site-specific restriction-modificationsystem, M subunit and
           related helicases [defense mechanisms] hypothetical
           protein [Pantoea ananatis AJ13355]
          Length = 786

 Score =  707 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/798 (36%), Positives = 407/798 (51%), Gaps = 141/798 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  T+ AV  KY 
Sbjct: 1   MSDN--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAETKDAVVAKYD 58

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S++  ++     ++ +  SF+NTS   L  +G  + + NLESYI +FS +A+ IFE
Sbjct: 59  ELKASSLPEDAKEKFLLRASTLSFFNTSRMDLGKMGQNDIKANLESYIQAFSPDAREIFE 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAESSNETAGE 178

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 235

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 236 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 286

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 287 SNPPFGVDWKKIEGEINDEHTQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDNHNVDGT 346

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T I TY+WI
Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGITTYVWI 406

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460
           LSN+K  ER+GKVQLI+ T+L   +R   G KR ++ +D  + I   +   E        
Sbjct: 407 LSNKKAPERKGKVQLIDGTNLCGKMRKSLGSKRNLMGEDDIKLITQTFGDFEVMDATTLE 466

Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 467 ELGLEKAAEQKSSRGRQPVTARTEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526

Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510
           +A L                                             A++  +++  L
Sbjct: 527 IATLRFAPKPFNAPMERLYEEFAAQWQADNHGDFSELEAEARAIIKAEFAELKEKQIKDL 586

Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557
                  + + +M++      A             +    +       KT  VK      
Sbjct: 587 LDRKLWLVHRGLMEKAQQIQTALGTQAGGKTLVSNDFNQFQMTLKGAIKTAGVKLDAKEN 646

Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL--- 596
             FI+A   K+P A+PV                   G   E+  D  L + ENVP     
Sbjct: 647 KQFIDAITTKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAV 706

Query: 597 ---ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
              + I+DYF  EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L++I
Sbjct: 707 STSDLIEDYFKAEVLPHVNDAWINADKRDAKDNEVGIVGYEIPFNRHFYVYQPPRPLEEI 766

Query: 654 DAELKGVEAQIATLLEEM 671
           DA+L  V A+I  LL+E+
Sbjct: 767 DADLDAVSAEIMKLLQEV 784


>gi|78046747|ref|YP_362922.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035177|emb|CAJ22822.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 728

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/748 (33%), Positives = 376/748 (50%), Gaps = 99/748 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++    
Sbjct: 2   NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKDAVLKQHEKLL 61

Query: 64  GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             +    +  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ 
Sbjct: 62  AKDTPKPAMHRLLGKAADPNRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F F   I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E 
Sbjct: 122 IFERFKFGDQIDKLDASNRLFTIIKAMASIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   L+   +  ++   PG++R++YDPTCGTGG L+++   +    + 
Sbjct: 182 AGDHFTPREVIRLMANLVYTGEQEVY--RPGIVRSIYDPTCGTGGMLSESEKFILGQNAA 239

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTG 289
                 L  HGQE   E+ A+C + MLI+  +       + NI +G TL    +KD F G
Sbjct: 240 A----HLHLHGQEYNDESWAICCSDMLIKDED-------TANIVKGDTLGDGKTKDGFEG 288

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           +RFHY L+NPPFG +W+  K  VE EH K G  GRFG GLP I+DGS+LFL H+  K+  
Sbjct: 289 ERFHYMLANPPFGVEWKDQKTVVENEHAKLGFAGRFGAGLPAINDGSLLFLQHMIAKMHP 348

Query: 349 PPNG-----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
              G     G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP  LF+ T I
Sbjct: 349 YDEGHPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGI 408

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG 462
            TY+W+++NRK EER+G VQLI+ T  +  ++     KR  I+D+Q   +  +Y +  +G
Sbjct: 409 YTYVWLVTNRKPEERQGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDG 468

Query: 463 K-----------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +                  SR+ + R  G+ ++ V RPLRM+F      +ARL+A   + 
Sbjct: 469 ESAEVVIDHKTGETENRVVSRVFENRELGFLKVTVERPLRMNFEATPGRVARLDAQSAFA 528

Query: 506 KLSPLHQSFWLDILKPMMQQ---------------IYPYGWAESFVKESIKSNEAKTLKV 550
            L+   +       +  + +                    + +  V E+     AK   +
Sbjct: 529 NLATSKKRKDEKAARQEIAEGQAMQQCIRELLVRLAGKGLYMDREVFEADLEKVAKKAGI 588

Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------ 598
           K       A   A G +DP A+   D  G   PD+ L + EN+P  E             
Sbjct: 589 KLPAPIRKAIFAALGERDPHAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPD 648

Query: 599 -------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
                        I DY  REV PHV DA++        D    +VGYEI  NR FY YQ
Sbjct: 649 KPNDALVEAFRDTIDDYMRREVLPHVADAWV--------DYSKTKVGYEIPINRHFYVYQ 700

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673
           P R L  I+A+++ +E +IA LL+ +  
Sbjct: 701 PPRPLPQIEADIRQLEGEIADLLKGLLA 728


>gi|188992675|ref|YP_001904685.1| Type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734435|emb|CAP52645.1| Type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. campestris]
          Length = 728

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/748 (33%), Positives = 385/748 (51%), Gaps = 99/748 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++    
Sbjct: 2   NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLL 61

Query: 64  GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             +   ++  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ 
Sbjct: 62  AKDTPEQAMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F FS  I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E 
Sbjct: 122 IFERFKFSDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   L+   +  ++K  PG++R++YDPTCGTGG L+++   +    + 
Sbjct: 182 AGDHFTPREVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNAA 239

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTG 289
                 L  +GQE   E+ A+C + MLI+  +       + NI +G TL    +KD F G
Sbjct: 240 A----HLHLYGQEYNDESWAICCSDMLIKDED-------TANIVKGDTLGDGKTKDGFEG 288

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           +RFHY L+NPPFG +W+  K  VE EH N G  GRFG GLP I+DGS+LFL H+  K+  
Sbjct: 289 ERFHYMLANPPFGVEWKDQKTVVENEHANHGFTGRFGAGLPAINDGSLLFLQHMIAKMHP 348

Query: 349 -----PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
                P   G + AIV + SPLF+G AGSG S IRRW++END ++ IVALP  LF+ T I
Sbjct: 349 YDGGNPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDTIVALPDQLFYNTGI 408

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG 462
            TY+W+++NRK EERRG VQLI+ T  +  ++     KR  I+D+Q   +  +Y +  +G
Sbjct: 409 YTYVWLVTNRKPEERRGYVQLIDGTRFFRKMKKSLNNKRNEISDEQIEALTALYGNYGDG 468

Query: 463 K-----------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +                  SR+ + R FG+ ++ V RPLRM+F      +ARL+    + 
Sbjct: 469 ESADVVIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPERIARLDEQSAFA 528

Query: 506 KLSPLHQ--------------SFWLDILKPMMQQIYPYG-WAESFVKESIKSNEAKTLKV 550
            L+   +                    ++ ++ ++   G + +  + E+     A  + +
Sbjct: 529 NLATSKKRKDEKVAQQEIAEGQAIQRSIRELLAELAVKGLYGDRELFEADLEKAANKVGI 588

Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------ 598
           K       A  +A G +DP+A+   D  G   PD+ L + EN+P  E             
Sbjct: 589 KLPAPIRKAIFSALGERDPQAEICRDAKGRPEPDSELRDTENIPLPEGTELPLPMAFGPD 648

Query: 599 -------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
                        I DY  REV PHV DA++        D    +VGYEI  NR FY Y+
Sbjct: 649 KPNDDLIEAFRDTIDDYMRREVLPHVADAWV--------DYSKTKVGYEIPINRHFYVYK 700

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673
           P R L  I+A+++ +E +IA LL+ +  
Sbjct: 701 PPRPLPQIEADIRQLEGEIADLLKGLLA 728


>gi|169634729|ref|YP_001708465.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter baumannii SDF]
 gi|169153521|emb|CAP02683.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter baumannii]
          Length = 671

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/670 (54%), Positives = 470/670 (70%), Gaps = 11/670 (1%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             + ++LA+FIW NA DLWGDF HT+FGK+ILPFT+LRRLEC LEPT+ AV   Y  F  
Sbjct: 10  NNTESTLASFIWNNANDLWGDFPHTEFGKIILPFTVLRRLECVLEPTKDAVLNTYEQFKD 69

Query: 65  SNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             + L+  +  V+G  FYN S Y+LS LG T T+ N E YIA+ S+N + IFE FDF++T
Sbjct: 70  QGMALDDILTNVSGNPFYNKSTYNLSNLGGTKTKANFEDYIANSSENVRVIFEQFDFNTT 129

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I +L KA LL +IC NF+ I+LHP+ VPDR MSN+YEHLI +FG+EV  G+EDFMTPRD+
Sbjct: 130 INKLAKANLLLRICNNFAAIDLHPNVVPDRTMSNVYEHLIAKFGAEVGTGSEDFMTPRDI 189

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           VHLA  LLL+PD+ LF++  G+IRT+YD TCGT GFLTD MN+V      +K+ P+LVPH
Sbjct: 190 VHLAATLLLEPDNELFEQKNGLIRTIYDQTCGTSGFLTDMMNYVDGFKDRYKVAPVLVPH 249

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL+PETHAV +  ML+++LESDP RDLS+NI+ GSTLS DLF G+RFHY  SNPPFG 
Sbjct: 250 GQELQPETHAVALGSMLLKKLESDPSRDLSQNIKLGSTLSNDLFAGQRFHYQCSNPPFGM 309

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W KD +AV+ EHK  G  GRFG GLPK SDGSMLFL +L +KLELP NGGGR AIVLS 
Sbjct: 310 SWAKDANAVQLEHKEKGLNGRFGAGLPKASDGSMLFLQNLISKLELPENGGGRGAIVLSG 369

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLFNG AGSGESEIRR++LEND +EAIVALPTD+FFRT I TY+W++SNRK E+R+GKV
Sbjct: 370 SPLFNGGAGSGESEIRRFILENDYLEAIVALPTDIFFRTGIGTYIWLISNRKPEQRKGKV 429

Query: 423 QLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT + +S+R NEG KR+ I+ +   +I  IY   E    S++ DY  FGYRR+KVL
Sbjct: 430 QLIDATGMGSSMRKNEGNKRKFIDQNSIDEISRIYADFEESSVSKIFDYTDFGYRRVKVL 489

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPLR+    D   L   +A   + KLS   Q+     ++        Y W E+   +++ 
Sbjct: 490 RPLRIDLQFDAEKLESFKASKEFGKLSDSDQNTVSAYIEQQFGDSKDYAWFENTFLKNLP 549

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
                    K SK    A I AFG ++P A+ V ++NGE   D+ LT+YEN+P  + I  
Sbjct: 550 -------LSKVSKGLKNALIAAFGVQNPDAEAV-EINGEVQMDSELTDYENIPLNQDIAA 601

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  +EV PH PDA ID  + D KD ++G VGYEINFNR+FY ++  R   +I AE+K + 
Sbjct: 602 YMAKEVLPHAPDAVIDTSYTDSKDGQVGVVGYEINFNRYFYVFEQPRHPNEIMAEIKALS 661

Query: 662 AQIATLLEEM 671
           A++A LL E+
Sbjct: 662 AEVAQLLGEI 671


>gi|206975574|ref|ZP_03236486.1| N-6 DNA methylase [Bacillus cereus H3081.97]
 gi|206746036|gb|EDZ57431.1| N-6 DNA methylase [Bacillus cereus H3081.97]
          Length = 669

 Score =  707 bits (1824), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/689 (36%), Positives = 368/689 (53%), Gaps = 44/689 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +     +FIW  AE L G +K  D+GKVILP  +LRR +C L+ T+  V   +  F   N
Sbjct: 3   NFQDKVSFIWSIAEVLRGPYKPEDYGKVILPLAVLRRFDCVLDSTKDEVLSNFEKFKAMN 62

Query: 67  ID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            D       ++A  +F+N S Y+ + L   + N  +NL  YI  FS  A+ I + FDF  
Sbjct: 63  EDAREPILNRIAKQNFHNASNYNFTKLLSDADNIADNLRDYINGFSKIARDIMDHFDFDR 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +L+   LLY   K FS ++LHP+ V +  M  I+E LIRRF       A D  TPR+
Sbjct: 123 QIEKLDNNDLLYLTIKRFSELDLHPEIVSNVEMGYIFEELIRRFSEHA--EAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L  +LL   DD +    PG+ +TLYD   GTGG  + A  ++ +  S   +      
Sbjct: 181 VVRLMVSLLFMHDDDMLT-KPGLTQTLYDCAAGTGGMGSVAQEYLKELNSTADLE----F 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
             QE+  E++A+C A +LI+  +       +KNI+ G+TLS D F G++F Y +SNPP+G
Sbjct: 236 FAQEINDESYAICKADILIKGAD-------AKNIRLGNTLSNDQFKGEQFDYLISNPPYG 288

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  ++ EH+  G  GRFGPG P+ SDG +LFL+HL +K++        G R AI
Sbjct: 289 VDWKSYEKPIKAEHEEQGYNGRFGPGTPRTSDGQLLFLLHLISKMKPVTAENPQGSRLAI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K   R
Sbjct: 349 IMNGSPLFTGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIR 408

Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQLINA D    ++      R  I  +Q  +I  +Y   +  ++ ++ D   FGY +
Sbjct: 409 KGKVQLINAVDFSKKMKKSMGSKRNEIAQEQIDEIARLYGDFKEREYVKIFDNEDFGYHK 468

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQI------ 526
           I V RPLR++F++ +  + R+     ++ L+   +        +++ K M  +I      
Sbjct: 469 ITVERPLRLNFVISEERIQRVAEQKAFQNLTVSKKKGDNGLAEIEVGKAMQAKIMEVLRS 528

Query: 527 --YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                 +        +  +  K   +      + A +     KD  A        +  PD
Sbjct: 529 LESEQLFKNRDEFTKLLKDAFKKEDITIGAPVLKAILAGLSEKDETAHICMKNKTDAEPD 588

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + ENVP  E I +YF REV PHV DA+I        D+   +VGYEI F R FY+Y
Sbjct: 589 TDLRDTENVPLKEEIYEYFKREVIPHVLDAWI--------DESKTKVGYEIPFTRQFYKY 640

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              R   +I  E+K +EA I   L+++  
Sbjct: 641 TALRSSAEIMEEIKELEASILEKLKKVMG 669


>gi|148653130|ref|YP_001280223.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
 gi|148572214|gb|ABQ94273.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
          Length = 806

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/805 (34%), Positives = 399/805 (49%), Gaps = 151/805 (18%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++ +LA FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV E+       
Sbjct: 12  QTSNNLAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEESKDAVVEEAQKISAM 71

Query: 66  NIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            ++ E+       K  G +FYNTS  +L+ +G ++   NL  YI SFS +A+ IF  F F
Sbjct: 72  GLNEEAEAKFLLRKTNGLAFYNTSPMTLAKMGQSDIEANLSHYIQSFSKDAREIFAHFKF 131

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              + +L  A LLYK+ + F  ++L P+ V +  M  ++E LIRRF    +E A +  TP
Sbjct: 132 EEFVGQLNDANLLYKVVQKFQNVDLSPEAVSNYEMGLVFEELIRRFAESSNETAGEHFTP 191

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD+V L T+L+   DD       G+IRT+YDPT GTGGFL+  M +V +   +     ++
Sbjct: 192 RDIVRLTTSLVFMEDDDAL-IKDGIIRTIYDPTAGTGGFLSSGMEYVLELNPNA----VM 246

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQEL PE++A+C A MLI+  E          I+ G+TLS D     +F Y LSNPP
Sbjct: 247 RAFGQELNPESYAICKADMLIKGQEV-------SRIKLGNTLSDDQLPADKFDYMLSNPP 299

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPN-------- 351
           FG  W+K    ++ EH+  G  GRFGPG P++SDGS+LFL+HL +K+    +        
Sbjct: 300 FGVDWKKIAGEIKDEHEQKGFDGRFGPGTPRVSDGSLLFLLHLISKMRPVASPKRDSLEL 359

Query: 352 ------------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                        G R  I+L+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+F+
Sbjct: 360 SNRSSEQQDTSVTGSRIGIILNGSPLFTGGAGSGESEIRRYILESDLLEAIIALPTDMFY 419

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVS 458
            T IATY+WIL+N K  ER+GKVQLI+ T+L++ +R   G KR  ++++  + I   +  
Sbjct: 420 NTGIATYVWILTNHKAPERKGKVQLIDGTNLYSKMRKSLGSKRNEMSEEDIKIITRTFGD 479

Query: 459 RE-----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
            E                                 S++ D   FGYRR+ + RPLR+S  
Sbjct: 480 FEVVDARALDKPADVKSNRGRQSATPKAETAKTFASKIFDTHEFGYRRVTIERPLRLSAQ 539

Query: 490 LDKTGLARLE-------------------------------------------------- 499
           +    +  L                                                   
Sbjct: 540 MSDEAIESLRYAERTYDSVMPALYEKFGEQWTEETYGDFGDQTSDIQVEARAMIKADFSE 599

Query: 500 -ADITWRKLSPLH----QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             +   +++        Q   ++  K +  +I    + +    + +     K   +  + 
Sbjct: 600 LKEKQIKEVLDSKLWREQLAIMNAAKVLQDEIGTEQFDDYNQFDEVFKQAIKDTGLDLTA 659

Query: 555 SFIVAFINAFGRKDPRAD-----------------PVTDVNG-----EWIPDTNLTEYEN 592
                 +N    K+P A+                  V D  G     E+  D++L +YEN
Sbjct: 660 KDKKQILNTITWKNPDAERVVKKSAKEANPLYGAFEVADSKGKAKIVEFETDSDLRDYEN 719

Query: 593 VPYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           +P        E I+ YF REV PHV DA+ID    D  D+EIG VGYEI FNR FY Y+P
Sbjct: 720 IPLDPSVSTCELIESYFKREVQPHVADAWIDAGKRDAIDEEIGVVGYEIPFNRHFYVYEP 779

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R L +IDA+L  V   I  LL E+
Sbjct: 780 PRPLSEIDADLDKVSQDIMQLLSEV 804


>gi|167917952|ref|ZP_02505043.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei BCC215]
          Length = 613

 Score =  705 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/672 (39%), Positives = 377/672 (56%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LEPT++AV  ++ A   + 
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEPTKAAVLAEFEAKTKAG 61

Query: 67  IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++ E F+  KV    FYNTS   L  L     + R NL  Y+  FS +A+ IFE FDF +
Sbjct: 62  LNSEPFLLRKVGDAKFYNTSPLDLVKLLGDQDHIRQNLYDYLRGFSPSARDIFERFDFHT 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I RL KA LLY + + F  I+LHP TV +  M  ++E LIR+F    +E A +  TPR+
Sbjct: 122 QIERLAKANLLYLVTEKFVNIDLHPSTVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +      ++RT+YDPT GTGG L+ A  ++ +     ++      
Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEYLLEHNPAARL----TM 237

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL  E++A+C A MLI+  +         NI  G+TLS D   G++F Y LSNPPFG
Sbjct: 238 FGQELNDESYAICKADMLIKGQDV-------ANIVAGNTLSDDGHAGRKFDYMLSNPPFG 290

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K + AV +EH+  G  GRFGPGLP++SDGSMLFL+HL +K+    +GG R  IVL+
Sbjct: 291 VEWKKVEKAVRQEHEQKGFSGRFGPGLPRVSDGSMLFLLHLVSKMRPAHDGGSRFGIVLN 350

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K + R+G 
Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPQHRKGY 410

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+A+  W  +R   G KR+ ++D+    I  ++      + + + D       R  V
Sbjct: 411 VQLIDASSFWQKMRKSLGSKRKELSDEHIDTITRLFGDFIEAELATVFDAEGKEVSRWVV 470

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                        G           KL+P+ + F          +   +G+    V+  +
Sbjct: 471 P----------AGGNPPEAPFGGKAKLAPISRVF----------KNEDFGYTTITVERPL 510

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           +  + + +     K                        G+   D+ L + ENVP  E I 
Sbjct: 511 RDEQGQVVLGAKGKQ----------------------KGKPQADSALRDTENVPLSEDIG 548

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF +EV PH PDA+I        D+E  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 549 AYFDQEVLPHAPDAWI--------DEEKSKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600

Query: 661 EAQIATLLEEMA 672
            A I  +LEE+A
Sbjct: 601 SANIMKMLEELA 612


>gi|256825200|ref|YP_003149160.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
 gi|256688593|gb|ACV06395.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
          Length = 663

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/668 (37%), Positives = 367/668 (54%), Gaps = 30/668 (4%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI--DLE 70
           NFIW  A+ L G ++  ++G VILPFT+L R E  LEPT+ AV      +  +      E
Sbjct: 19  NFIWGIADMLRGPYRPKEYGTVILPFTVLARFESVLEPTKDAVLAASEKYESAPDLVRHE 78

Query: 71  SFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
              + +G  FYN S+++LSTL    N   NL++ I  +++  + +FE FD    I  L+ 
Sbjct: 79  MLKRASGQEFYNISQFTLSTLGDPANQAANLQNLIEGYNEEVRQVFERFDMPKIIRDLDD 138

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              L  + K F+ +++HPD V +  M +++E LIRRF     + A D+ TPR+VV L  +
Sbjct: 139 RDRLSAVVKEFAALDVHPDRVSNAEMGDVFEELIRRFMEASKDVAGDYFTPREVVRLMVS 198

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL  PD       P +IR +YDPTCGTGG L++A   + +   H  +       GQE   
Sbjct: 199 LLFSPDTEDLS-DPHLIRQVYDPTCGTGGMLSEAHEWMREHNGHATLN----LFGQEFNA 253

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            ++A+  A ++I+       +  ++NI  G TL  D   GK F YC+SNPPFG+ W+  +
Sbjct: 254 LSYAMAKADLIIK-------KQDAQNIFFGDTLLVDGHEGKTFSYCISNPPFGQDWKVQE 306

Query: 310 DAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            AV+ E + +G+ GRF  GLP ++DG+MLFL HL +K+     GGGR AIVL+ S LF G
Sbjct: 307 KAVKAERERDGDEGRFAAGLPSVNDGAMLFLQHLVSKMRPAAQGGGRGAIVLNGSALFTG 366

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            AG G SEIRR LLENDL++AI+ LPTDLF+ T IATY+W+L N K +ERRGKVQLI+ T
Sbjct: 367 SAGQGPSEIRRHLLENDLVDAIIGLPTDLFYNTGIATYIWVLDNNKPQERRGKVQLIDGT 426

Query: 429 DLWTSIRNE-GKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLR 485
             W  +R   G KRR++++     I+D+Y   E  + + S++ +   FGYR I V +PLR
Sbjct: 427 AQWVKMRKSIGAKRRMLSEANITSIVDLYGEYEDADPEVSKVFNTEDFGYRTITVEQPLR 486

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             + +D+  +         +KL    +    + L  +    +   W E    +       
Sbjct: 487 QVYSVDEDRIEAALNLTPIKKLDKETRHLLREALDSLD---HEQVWTERGEFDKDLGTAL 543

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVR 605
              +V  + +   A I AF    P+ + V    G   PD +L + ENVP  E +  Y  R
Sbjct: 544 GAHRVGLTPANRRAVIGAFAESSPQGEIVKGPKGRIEPDASLRDTENVPLTEDVDAYVER 603

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P  P+A++        D+   ++GYEI F R FY Y+P R L +IDA+++   A++ 
Sbjct: 604 EVLPWAPEAWV--------DESKTKIGYEIPFTRAFYVYEPPRPLAEIDADVQAAIARVQ 655

Query: 666 TLLEEMAT 673
            L  E+ +
Sbjct: 656 GLFAEVRS 663


>gi|260552462|ref|ZP_05825838.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
 gi|260405269|gb|EEW98765.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
          Length = 759

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/771 (36%), Positives = 402/771 (52%), Gaps = 114/771 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + + +A FIW  A+ L GDFK   +G+VILPFTLLRRLEC  E ++++V E   
Sbjct: 1   MTNT--NFSQVAAFIWSVADLLRGDFKQFQYGRVILPFTLLRRLECVFESSKASVLEANE 58

Query: 61  AFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                 +  E+          G SF+NTSE  LS+LG  N R NL +YI  FS +A+ IF
Sbjct: 59  KVKAMPLPEEAKEKILLKATDGLSFFNTSELDLSSLGQKNIRANLGNYIQHFSKDAREIF 118

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F F      L+ A LLYK+ + F+  +L P+ + +  M  ++E LIRRF    +E A 
Sbjct: 119 EHFKFDEFTGLLDDANLLYKVIQKFASTDLSPENISNHDMGLVFEELIRRFAESSNETAG 178

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD+V L T L+   DD       G+IRT+YDPT GTGGFL+    +V +      
Sbjct: 179 EHFTPRDIVRLTTGLIFSQDDDAL-NKEGVIRTIYDPTAGTGGFLSSGTEYVYEHNPEA- 236

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              ++   GQEL PE++A+C A MLI+  +         NI+ G+TLS D    ++F Y 
Sbjct: 237 ---VMRVFGQELNPESYAICKADMLIKGQDVR-------NIKLGNTLSNDQLAYEKFDYM 286

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE--LPPNG 352
           LSNPPFG  W+K +D ++ EH + G  GRFG GLP++SDGS+LFLMHL +K+        
Sbjct: 287 LSNPPFGVDWKKIEDEIKDEHQQKGFNGRFGAGLPRVSDGSLLFLMHLISKMRDVDSTGQ 346

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  I+L+ SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+F+ T IATY+W+LSN
Sbjct: 347 GSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIIALPTDMFYNTGIATYVWVLSN 406

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------NGK- 463
           +K  ER+GKV LINA++L + +R   G KR  + + + R I   Y + E       +G+ 
Sbjct: 407 KKDAERKGKVHLINASNLSSKMRKSLGSKRNYLTESEIRTITQNYGAFEAVDTLTLDGES 466

Query: 464 ------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----------------- 500
                  S++ +   FGYRR+ + RPLR+S  L    +A L                   
Sbjct: 467 EQQKPFSSKIFNSYEFGYRRVTIERPLRLSAQLSDDRIATLRFAPKPFNAVMQKVYESYG 526

Query: 501 -----------------------DITWRKLSP------------LHQSFWLDILKPMMQQ 525
                                     + +L              L Q   +   + +  +
Sbjct: 527 KDWTETSYGQLSDDAQVEIRALIKAEFSELKEKDIKTVLEPKLWLEQRALMRKAQSLQTK 586

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV--NG---- 579
           I    + +  + + +     K   +K        F++A   K+P A+P  +    G    
Sbjct: 587 IGTAQFDDFNIFDELLKQALKDSSIKLEGKEKKQFLDAVTWKNPEAEPCINKVIKGKENP 646

Query: 580 ------------EWIPDTNLTEYENVPYL-------ESIQDYFVREVSPHVPDAYIDKIF 620
                       E++ D +L + EN+          + I+ YF REV  HVPDA+I+   
Sbjct: 647 LYGQFSYKAKVVEFVQDGDLRDAENIALDHPSQSTIDLIESYFKREVQLHVPDAWINADK 706

Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            D +D EIG VGYEI FNR FY YQP R L +IDA+L  V  +I  LL+E+
Sbjct: 707 RDAQDGEIGIVGYEIPFNRHFYVYQPPRDLAEIDADLDAVSREIMALLQEV 757


>gi|228964021|ref|ZP_04125151.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228795673|gb|EEM43150.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus thuringiensis serovar sotto str. T04001]
          Length = 669

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/689 (35%), Positives = 369/689 (53%), Gaps = 44/689 (6%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +     +FIW  AE L G +K  D+GKV+LP  +LRR +C LE T+  V   +  F   N
Sbjct: 3   NFQDKVSFIWSIAEVLRGPYKPEDYGKVVLPLAVLRRFDCVLENTKDEVLANFEKFKAMN 62

Query: 67  ID--LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            D       ++A  +F+NTS Y+ + L   S N  +NL  YI  FS  A+ I + FDF  
Sbjct: 63  EDAREPILNRIAKQNFHNTSNYTFAKLLSDSDNIADNLRDYINGFSKTARDIMDHFDFDR 122

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +L+   LLY   K FS ++LHP+ V +  M  I+E LIRRF       A D  TPR+
Sbjct: 123 QIEKLDNNDLLYLTIKRFSELDLHPEVVSNVEMGYIFEELIRRFSEHA--EAGDHYTPRE 180

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L  +LL   DD +     G+ +TLYD   GTGG  + A  ++ +      +      
Sbjct: 181 VVRLMVSLLFMQDDDILT-KHGLTQTLYDCAAGTGGMGSVAQEYLTELNKTADLE----F 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
             QE+  E++A+C A +LI+  +       +KN++ G+TLS D F G +F Y +SNPP+G
Sbjct: 236 FAQEINGESYAICKADILIKGAD-------AKNVRLGNTLSNDQFKGDKFDYLISNPPYG 288

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPP---NGGGRAAI 358
             W+  +  ++ EH+  G  GRFGPG P+ SDG +LFLMHL +K++        G R AI
Sbjct: 289 VDWKSYEKPIKAEHEEQGYAGRFGPGTPRTSDGQLLFLMHLISKMKPVTAENPQGSRLAI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF+G AGSGESEIRR++LENDL+E IVA+P DLF+ T IATY+WIL+N K   R
Sbjct: 349 IMNGSPLFSGDAGSGESEIRRYVLENDLVEGIVAMPNDLFYNTGIATYIWILTNNKAAIR 408

Query: 419 RGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GKVQL+NA D    ++      R  I+ +Q  +I+ +Y +    +  ++ D   FGY++
Sbjct: 409 KGKVQLVNAVDFSKKMKKSMGSKRNEISQEQIDEIVRLYGNFTESEHVKIFDNEEFGYQK 468

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS-----FWLDILKPMMQQI------ 526
           I V RPLR++F++ +  +  +     +  L+   +        ++  K + ++I      
Sbjct: 469 ITVERPLRLNFLISEERIQCVAEQKAFENLAKSKKKGDNGLAEIEAGKELQEKIIAVLRG 528

Query: 527 --YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                 +        +  +E K   V      + A +     KD  AD       +  P+
Sbjct: 529 LESEELFKNREEFTKLLKDEFKKKDVAIGAPVLKAILAGLSEKDETADTCMKNKTDAEPN 588

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T+L + E+VP  E + +YF REV PHV DA+I        D+   ++GYEI F R FY+Y
Sbjct: 589 TDLRDTESVPLKEDMYEYFEREVKPHVSDAWI--------DESKTKIGYEIPFTRQFYKY 640

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              R   +I AE+K +E  I   L+E+  
Sbjct: 641 TKLRSSDEIMAEIKELEESILEKLKEVIG 669


>gi|126666658|ref|ZP_01737636.1| type I restriction-modification system, M subunit, putative
           [Marinobacter sp. ELB17]
 gi|126629046|gb|EAZ99665.1| type I restriction-modification system, M subunit, putative
           [Marinobacter sp. ELB17]
          Length = 728

 Score =  704 bits (1818), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/743 (33%), Positives = 373/743 (50%), Gaps = 99/743 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L  +IW  A  L G ++   +  V+LP  +LRRL+C LEPT+  V ++Y       +
Sbjct: 6   HDQLKGYIWDIANRLRGPYRPPQYRLVMLPIIVLRRLDCVLEPTKDKVLKEYEKLSAQGM 65

Query: 68  DLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
              +  ++ G        +  YNTS ++   L     N   NL +YI  FS  A+AIFE 
Sbjct: 66  PENAMERILGKAADPSRTHPLYNTSPFTFQRLLGDPENIAPNLVAYINGFSSTARAIFER 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F F   I +L+ +  L+ I K  + ++LHPD + +  M  ++EHL+ RF  + +E A D 
Sbjct: 126 FKFIDQIEKLDVSNRLFTIIKAMAEVDLHPDRIDNLQMGYLFEHLVMRFNEQANEEAGDH 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   L+   +  ++   PG+ RT+YDPTCGTGG L+++   + D  +   + 
Sbjct: 186 FTPREVIRLMANLVYTGEKDVYT--PGIYRTIYDPTCGTGGMLSESEKFILDQNAQANL- 242

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRFH 293
                 GQE   E+ A+C + MLI+  +       + +I  G TL      D F GK+FH
Sbjct: 243 ---ALFGQEYNDESWAICCSDMLIKDED-------TSSIVLGDTLGDGKTRDGFEGKQFH 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFG +W++ K  VEKEHK  G  GRFG GLP I+DGS++FL H+ +K+    +G
Sbjct: 293 YLLANPPFGVEWKEQKHVVEKEHKEMGFAGRFGAGLPAINDGSLMFLQHMMSKMHPYKDG 352

Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G + AIV + SPLF+G AGSG S IRRW++END ++AIVALP  LF+ T I TY+
Sbjct: 353 DEDSAGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIENDWLDAIVALPDQLFYNTGIFTYV 412

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK--- 463
           W+++NRK  ERRGKVQLI+ T     ++     KR  I ++Q   +  +Y + ++G+   
Sbjct: 413 WLVTNRKATERRGKVQLIDGTRFSQRMKKSLNNKRNEITEEQIHDLTRLYGNYQDGEVAD 472

Query: 464 --------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                          S + + R FG+ ++ V RPLRM+F+     +ARL+    +  L+ 
Sbjct: 473 VIMNHKTGERETRVVSHIFENREFGFLKVTVERPLRMNFMATPERIARLDDQAAFASLAT 532

Query: 510 LHQSFWLDILKPMMQQ---------------IYPYGWAESFVKESIKSNEAKTLKVKASK 554
             +     +    +++                      +    +S  +  A+   +K   
Sbjct: 533 SKKRKHEAVAAQEIEEGRQIQASIRTLLSTLASNGQSKDRAAFDSHMNVAAQKTGLKLPA 592

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY------------------- 595
               A  NA G +DP A+   D  G+  PD+ L + EN+                     
Sbjct: 593 PIKKAIFNALGERDPNAEICLDGKGQPEPDSELRDTENISLPAGTQLPLPMQFGSDKPND 652

Query: 596 ------LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
                    I  Y  REV PHVPDA++        D    +VGYEI  NR FY Y+P R 
Sbjct: 653 ELMETFRADIDAYMAREVLPHVPDAWV--------DYSKTKVGYEIPINRHFYVYKPPRP 704

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L  I+ E+  +E +IA LL+ + 
Sbjct: 705 LDKIETEITTLEGEIAELLKGLV 727


>gi|25026604|ref|NP_736658.1| putative restriction enzyme subunit S [Corynebacterium efficiens
           YS-314]
 gi|259508263|ref|ZP_05751163.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium efficiens YS-314]
 gi|23491883|dbj|BAC16858.1| putative restriction enzyme subunit S [Corynebacterium efficiens
           YS-314]
 gi|259164151|gb|EEW48705.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium efficiens YS-314]
          Length = 663

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/672 (38%), Positives = 367/672 (54%), Gaps = 32/672 (4%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           A+FIW  A+ L G +K   +G +ILPFT+L RL+  L PT+ AV                
Sbjct: 14  ASFIWSAADLLRGTYKQHQYGNIILPFTVLARLDGVLAPTKQAVLTAIEGLDPDQAPSAG 73

Query: 72  FVKV---AGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            ++      YSFYN S + L +L     N   NL  Y+ +FS N + IF+ + F  TI  
Sbjct: 74  MLRNRAGHDYSFYNRSRHDLRSLQGDVDNLEENLRDYVNAFSPNVRDIFDQYKFDETIID 133

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL +I ++F+  +L P+ V + VM +I+E LIR+F    +E A +  TPR+V+ L
Sbjct: 134 LANNDLLLEILQHFAKADLRPEVVSNEVMGHIFEELIRKFAEASNETAGEHFTPREVIDL 193

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +LLD D+ L    PG+IR++YDPT GTGG L+ A N +       ++       GQE
Sbjct: 194 MVTILLDGDEELST--PGVIRSVYDPTAGTGGMLSAADNKIKAFNHQAQVN----LLGQE 247

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           + PE++A+C A M+++            NI  G+TL+   F  + FHY LSNPPFG  W+
Sbjct: 248 INPESYAICKADMVVKG-------QPITNIALGNTLTNPAFEDQTFHYALSNPPFGVAWK 300

Query: 307 KDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSS 362
           KD+ AVE+EH+  G  GRFGPGLP++SDGS+LFLMHL +KL  P   GG   R AIVL+ 
Sbjct: 301 KDRPAVEREHEIAGHAGRFGPGLPRVSDGSLLFLMHLISKLREPGLQGGAAGRGAIVLNG 360

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGES IR+W+L+ND +EAI+ LPTD+F+ T I+TY+WIL+  K   R+GKV
Sbjct: 361 SPLFTGGAGSGESNIRKWVLDNDYLEAIIGLPTDMFYNTGISTYIWILNKDKDHARKGKV 420

Query: 423 QLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+AT+++  +R   G KR++++DD    I  +Y +    + S++ +   F YR I V 
Sbjct: 421 QLIDATEMFVKMRKSIGSKRKMLSDDNITTIATLYGNFVESEHSKIFNTTDFYYRTITVE 480

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RPL++++      + R  A     KL    Q      L    +  +              
Sbjct: 481 RPLKLNYAFTPQRIERALAAKPVAKLEGWEQEALDKALGEAEEATHGVVSTNRAQFTKDL 540

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
                   +    + + A +   G  D   + VT   G+   D +L + ENVP+ + I D
Sbjct: 541 KKILADEGLVLKPAVLKAVLTELGEHDDHGELVTKA-GKPEADASLRDTENVPWDQDIHD 599

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           Y  REV P VPDA+I        D+   + G EI F R FY+Y P R L+DID +L  V 
Sbjct: 600 YLKREVHPFVPDAWI--------DETKTKEGVEIPFTRHFYKYVPPRPLKDIDRDLDEVL 651

Query: 662 AQIATLLEEMAT 673
            +I   LE++  
Sbjct: 652 GRIRVRLEQVKA 663


>gi|238918473|ref|YP_002931987.1| hypothetical protein NT01EI_0518 [Edwardsiella ictaluri 93-146]
 gi|238868041|gb|ACR67752.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 786

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/798 (35%), Positives = 406/798 (50%), Gaps = 141/798 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC L  ++ AV  KY 
Sbjct: 1   MTNT--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLAESKDAVVAKYD 58

Query: 61  AFGGSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
               S +  E+     ++ +G +F+NTS+  L  +G  + + NLE+Y+ +FS +A+ IFE
Sbjct: 59  ELKTSPLPEEAKQKFLLRASGLAFFNTSKMDLGKMGQNDIKANLENYVQAFSPDAREIFE 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F FS  +  LE A LL+K+ K F+  +L P  + +  M  ++E LIRRF    +E A +
Sbjct: 119 HFKFSEFVGLLEDANLLFKVVKKFATTDLSPKAISNYEMGLVFEELIRRFAESSNETAGE 178

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +   +   
Sbjct: 179 HFTPRDIVRLTTSLVFMEDDEALTQD-GIIRTIYDPTAGTGGFLSSGMEYVHELNPNA-- 235

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y L
Sbjct: 236 --VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPQDQFDYML 286

Query: 297 SNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN---- 351
           SNPPFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFLMHL +K+    N    
Sbjct: 287 SNPPFGVDWKKIEGEINDEHMQKGFNGRFGPGLPRVSDGSLLFLMHLISKMRDSHNVDGS 346

Query: 352 --GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR  I+L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+WI
Sbjct: 347 VSNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEGIVALPTDMFYNTGIATYVWI 406

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE-------- 460
           LSN+K  ER+GKVQLI+ ++L   +R   G KR ++ DD  + I   +   +        
Sbjct: 407 LSNQKAAERKGKVQLIDGSNLCGKMRKSLGSKRNLMGDDDIKLITQTFGDFKVMNATTLE 466

Query: 461 --------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                                         S++ +   FGYRR+ + RPLR+S  +    
Sbjct: 467 ALGLEKAAEQKSNRGRQPATAKAEAPKTFASKIFNSTDFGYRRLTIERPLRLSAQVTDEA 526

Query: 495 LARLE--------------------------------------------ADITWRKLSPL 510
           +A L                                             A++  +++  L
Sbjct: 527 IATLRFAPKPFNVPMERLYDEFAVQWQAESYGDLSELEAEARAIIKAEFAELKEKQIKDL 586

Query: 511 HQSFWLDILKPMMQQIYPYGWA-------------ESFVKESIKSNEAKTLKVKASKSFI 557
             S      + +M++      A             +    +       KT  VK      
Sbjct: 587 LDSKLWLAQRSLMEKAQQIQAALGTQVGGKTQVSNDFNQFKLTLKGAIKTAGVKLDAKEN 646

Query: 558 VAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLES- 598
             FI+A   K+P A+PV                   G   E+  D  L + ENVP   + 
Sbjct: 647 KQFIDAITSKNPDAEPVVKKVLKEAAQPLYGAFEYKGKVVEFEQDGELRDNENVPLNPAQ 706

Query: 599 -----IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
                I++Y   EV PHV DA+I+    D KD E+G VGYEI FNR FY YQP R L +I
Sbjct: 707 STSNLIENYVQAEVLPHVNDAWINADKRDAKDGEVGIVGYEIPFNRHFYVYQPPRPLSEI 766

Query: 654 DAELKGVEAQIATLLEEM 671
           DA+L  V A++  LL+E+
Sbjct: 767 DADLDAVSAEMMKLLQEV 784


>gi|307244214|ref|ZP_07526329.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492364|gb|EFM64402.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
          Length = 670

 Score =  702 bits (1811), Expect = 0.0,   Method: Composition-based stats.
 Identities = 250/690 (36%), Positives = 378/690 (54%), Gaps = 40/690 (5%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + + +  +NFIWK A+ L GD+K  ++  VILPFT+L+RL+  L      V +      
Sbjct: 1   MSINISDKSNFIWKIADLLRGDYKQHEYADVILPFTVLKRLDSVLIDNHDEVVKLNKTLT 60

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFS 121
             N D     + +GY FYN SE++   L     N   N+  YI  FS+NA+ I E F+  
Sbjct: 61  YKNKDP-FLCRASGYKFYNVSEFTFEKLKDDPNNLDENIVDYIKGFSENAREILEAFNIY 119

Query: 122 STIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + I RLEKAGLLY I   F+  I+LHPD V +  M  I+E LIR+F    +E A +  TP
Sbjct: 120 TQIERLEKAGLLYLIVSKFADEIDLHPDRVSNTEMGYIFEELIRKFSEMSNETAGEHFTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L  A+L DPD      SP  +  LYDP  GTGG L+  +++  +         I+
Sbjct: 180 REVIRLMVAVLFDPDMDKIS-SPSFMAKLYDPAAGTGGMLSAGISYAEELNERA----II 234

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQEL   T+A+C +  LI+           +NI  G++ ++D    ++F Y L NPP
Sbjct: 235 EVYGQELNQSTYAICKSDTLIKG-------KGYENIYYGNSFTEDGVKNEKFDYMLCNPP 287

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG +W+K +DAV+ E +  G  GRFG GLP+ISDGS LFL H+ +K++ P NGG R  IV
Sbjct: 288 FGVEWKKYQDAVKDEAQSLGFDGRFGAGLPRISDGSFLFLQHMISKMKDPKNGGSRIGIV 347

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            + SPLF G AGSGESEIRRW++EN  +E I+ALP  LF+ T I TY+WILSNRK++ R+
Sbjct: 348 FNGSPLFTGDAGSGESEIRRWIIENGWLETIIALPDQLFYNTGILTYVWILSNRKSKLRQ 407

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           GK+QLI+ T  +  +R   G KR+ ++++  ++I +IY S  + ++S++ D   F + +I
Sbjct: 408 GKIQLIDGTSFFERMRKPLGDKRKKLSEEDTKKIANIYGSFVDSEYSKIFDEDDFAHYKI 467

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLS--------------PLHQSFWLDILKPMMQ 524
            V RPLR++F++    + +L+ +  +  L+                 +    DI+  +  
Sbjct: 468 TVERPLRLNFMVSPDRIEKLKEETAFINLAKSRKKNEETRNKEIEEGEKLQRDIIHVLEM 527

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
                 + +    E I +   K   +        A +NA   KD  A+   D  G   PD
Sbjct: 528 MDDSVFYKDRAKFEKILNKAFKAAGISIKAPLKKAILNALSEKDETAEICRDKKGNPEPD 587

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           T L + E +P+ + I++YF REV P+ PDA+ID+           ++GYEI F R+FY+Y
Sbjct: 588 TELRDIEQIPFKDDIEEYFKREVLPYAPDAWIDEDK--------TKIGYEIPFTRYFYKY 639

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           +     ++   E+K +   I   +  +  E
Sbjct: 640 EELGDAKETLEEIKELGLSIQESISSLFEE 669


>gi|148263546|ref|YP_001230252.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146397046|gb|ABQ25679.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 777

 Score =  701 bits (1810), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/787 (36%), Positives = 395/787 (50%), Gaps = 131/787 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +  A FIW  A+ L GDFK + +G++ILPFTLLRRLEC LE ++ AV  K+    
Sbjct: 1   MTINFSQTAAFIWSVADLLRGDFKQSQYGRIILPFTLLRRLECVLEQSKPAVLAKHAEVS 60

Query: 64  GSNIDLESF----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
             N+  E++    ++    SF+N S   LS LG +  ++NLE+YI  FS +A+ IFE F 
Sbjct: 61  KMNLPEEAYEKMVLRATDESFFNISPMDLSKLGESGIKDNLENYIQCFSKDAREIFEYFK 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+  I +L  A LLYK+ + F+  +L P  + +  M  ++E LIRRF    +E A +  T
Sbjct: 121 FAEFIGQLNDANLLYKVVQKFANTDLSPQAISNYEMGLVFEELIRRFAESSNETAGEHFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V L T+L+   DD       G+IRT+YDPT GTGGFL+  M +V +         +
Sbjct: 181 PRDIVRLTTSLVFMEDDEALTRD-GIIRTIYDPTAGTGGFLSSGMEYVYELNPKA----V 235

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F Y LSNP
Sbjct: 236 MRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLYADKFDYMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  +  EH   G  GRFGPGLP++SDGS+LFLMHL +KL    +GGGR  I
Sbjct: 289 PFGVDWKKVETEINDEHTLKGFAGRFGPGLPRVSDGSLLFLMHLISKLRDTKDGGGRIGI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W+LSN+K  ER
Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVWVLSNKKDPER 408

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-------------- 463
           +GKVQLIN  +L   +R   G KR ++ +D    I   +   E                 
Sbjct: 409 KGKVQLINGVNLCAKMRKSLGSKRNVMGEDDIATITRAFGRFERVDTLTLDKPDEVKSNR 468

Query: 464 ---------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-------- 500
                           S++     FGYRRI V RPLR+S       L  L          
Sbjct: 469 GRQADNPKAPEPKTFSSKIFATTDFGYRRITVERPLRLSVQFTGERLEELRFAPKPFNVV 528

Query: 501 ------------------------------------DITWRKLSPLHQSFWLDILKPMMQ 524
                                               D+  +++  L  +      + +++
Sbjct: 529 MKWAYEQFGQSWTDADYGDLSDVAVEVRAYVKANFSDLKEKQIKELLNATLWRDQRALLK 588

Query: 525 QIYPYGWA----------------ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                  A                +  + E       K   V          ++A   K+
Sbjct: 589 SGQTLQSALAGQMGLAAIVDGSCDDFNLFEEELKKALKLTGVNLDLREKKQLLDAVSWKN 648

Query: 569 PRADPVTD------------------VNGEWIPDTNLTEYENVPY------LESIQDYFV 604
           P A  V                       E+  D +L + EN+P        E+++ YF 
Sbjct: 649 PEAQRVIKKVHKEKANPLYGLFAVAGKVVEFQADGDLRDNENIPLDPSRSVTETVEAYFK 708

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           +EV+PHVPDA+ID    DEKD E+G VGYEI FNR FY Y P R L +IDA+L  V A+I
Sbjct: 709 KEVAPHVPDAWIDAGKRDEKDGELGIVGYEIPFNRHFYVYAPPRDLVEIDADLDVVSAEI 768

Query: 665 ATLLEEM 671
             LL E+
Sbjct: 769 MALLREV 775


>gi|227496835|ref|ZP_03927103.1| type I restriction-modification system methyltransferase subunit
           [Actinomyces urogenitalis DSM 15434]
 gi|226833668|gb|EEH66051.1| type I restriction-modification system methyltransferase subunit
           [Actinomyces urogenitalis DSM 15434]
          Length = 687

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/697 (34%), Positives = 359/697 (51%), Gaps = 47/697 (6%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFG 63
           T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T++ V   +     
Sbjct: 8   TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGV 67

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            + +    + +  GY F+N S ++L TL     N   NL SY+  FS NA+ + + +DF 
Sbjct: 68  PAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYDFY 127

Query: 122 STIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + I RL+++ LLY+I   F+    +  P  V +  M +I+E LIRRF    +E A +  T
Sbjct: 128 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHFT 187

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   +L  PD       PG + +LYDP  GTGG L+ A+    +     +I   
Sbjct: 188 PREVIQLMVEVLFGPDMNAIC-EPGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE-- 244

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L NP
Sbjct: 245 --VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCNP 295

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------ 352
           PFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K++           
Sbjct: 296 PFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQNAP 355

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  IV + SPLF G AG GES IRRW+LEND +EAI+ALP  +F+ T I TY+W+LSN
Sbjct: 356 GTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVLSN 415

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK   R+ KVQLI+AT L+  +R   G+KR+ + +D   QI  IY      + S++ D  
Sbjct: 416 RKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFDTC 475

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--------------SFWLD 517
            FG+  + V RPLR++F      + RL     ++ L+   +                   
Sbjct: 476 EFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQQA 535

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           I+  +        W       ++  +  K   +      + A + A G  DP AD   D 
Sbjct: 536 IIDTLETLDGQQVWKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTADICRDA 595

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
            G   PD  L + E +P  E I  Y  REV P+  DAY+D            ++GYEI F
Sbjct: 596 KGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVDPDK--------TKIGYEIPF 647

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            R+FYQY+         AE++ + A+I   + ++  E
Sbjct: 648 TRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 684


>gi|91225111|ref|ZP_01260333.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Vibrio alginolyticus
           12G01]
 gi|91190054|gb|EAS76325.1| putative type I restriction-modification system, M subunit; N-6
           Adenine-specific DNA methylase [Vibrio alginolyticus
           12G01]
          Length = 774

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/786 (37%), Positives = 403/786 (51%), Gaps = 129/786 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEP++ AV  +Y 
Sbjct: 1   MTNN--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKDAVLTEYE 58

Query: 61  AFGGSNIDLESFV------------KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
                 +  E+              +    SF+NTS  +L  +G +N + NLE Y+ SFS
Sbjct: 59  RVSKMGLPEEAAEKFLLRATFEEKDRSKNLSFFNTSPMNLGKMGQSNIKANLEKYVQSFS 118

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +A+ IFE F F   +  LE A LLYK+ K F+  +L P+++ +  M  ++E LIRRF  
Sbjct: 119 KDAREIFEHFKFDEFVGLLEDANLLYKVVKKFATTDLSPNSISNHDMGLVFEELIRRFAE 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             +E A ++ TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V 
Sbjct: 179 GSNETAGEYFTPRDIVRLTTSLVFMEDDEALTKD-GIIRTIYDPTAGTGGFLSSGMEYVH 237

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +         ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D   
Sbjct: 238 ELNPKA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLP 286

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             +F Y LSNPPFG  W+K +  ++ EH + G  GRFG GLP++SDGS+LFLMHL +K+ 
Sbjct: 287 ADQFDYMLSNPPFGVDWKKIEGEIKDEHQQKGFDGRFGAGLPRVSDGSLLFLMHLISKMR 346

Query: 348 LPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              N       GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T
Sbjct: 347 DKKNVDNKVIDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNT 406

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE 460
            IATY+W+LSN+K   R+GKVQLIN  +L T +R   G KR  + D++ R I   +   E
Sbjct: 407 GIATYVWVLSNKKDPARKGKVQLINGANLSTKMRKSLGSKRHYLTDEEIRTITKNFGDFE 466

Query: 461 NGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA------ 500
                             S++ D   FGYRR+ + RPLR+S  +    +  L        
Sbjct: 467 EIDTLTKDGVTDNQKHFASKIFDTYQFGYRRLTIERPLRLSAQITDEAVESLRFAPKPFN 526

Query: 501 --------------------------------------DITWRKLSP-------LHQSFW 515
                                                 ++  +++         L+Q   
Sbjct: 527 AVMQAVFEQFGAEWTEDTYGSLTDVEKEVRVLIKADFPELKEKQIKDVLDSKLWLNQKAL 586

Query: 516 LDILKPMMQQIYP------YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
           +D  K +   +            +    E       K   +K        FI+A   K+ 
Sbjct: 587 MDAAKALQIAVGDSLGGKAQQSDDFNQFELTLKGAFKATGIKFDVKQKKQFIDAVTWKNQ 646

Query: 570 RADPVTDV---------------NG---EWIPDTNLTEYENVPYLES------IQDYFVR 605
            A+PV                   G   E+  D +L + ENVP   S      I+ YF R
Sbjct: 647 DAEPVIKKVLKETAQPLYGAFDYKGKVVEFQQDGDLRDNENVPLDPSVSTSTLIESYFKR 706

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV PHV DA+I+    D+KD EIG VGYEI FNR FY YQP R L+ IDA+L  V A I 
Sbjct: 707 EVQPHVADAWINADKRDDKDNEIGVVGYEIPFNRHFYVYQPPRTLEAIDADLDAVSADIM 766

Query: 666 TLLEEM 671
            LL+E+
Sbjct: 767 KLLQEV 772


>gi|315656948|ref|ZP_07909833.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492340|gb|EFU81946.1| type I site-specific deoxyribonuclease [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 682

 Score =  700 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 244/697 (35%), Positives = 360/697 (51%), Gaps = 47/697 (6%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFG 63
           T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T++ V   +     
Sbjct: 3   TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVDTKTDVLAIRDQKGV 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            + +    + +  GY F+N S ++L TL     N   NL SY+  FS NA+ + + +DF 
Sbjct: 63  PAEVKRIQYARATGYPFWNASRFTLHTLKNDPDNLEGNLRSYVEGFSRNARDVLKSYDFY 122

Query: 122 STIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + I RL+++ LLY+I   F+    +  P  V +  M +I+E LIRRF    +E A +  T
Sbjct: 123 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEHFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   +L DPD       PG + +LYDP  GTGG L+ A+    +     +I   
Sbjct: 183 PREVIQLMVEVLFDPDMNAIC-EPGFMASLYDPGVGTGGMLSAAIERAHELNEGARIE-- 239

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L NP
Sbjct: 240 --VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCNP 290

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------ 352
           PFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K++           
Sbjct: 291 PFGVEWKKYADPIKDEAEKRGWKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADIQNAP 350

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  IV + SPLF G AG GES IRRW+LEND +EAI+ALP  +F+ T I TY+W+LSN
Sbjct: 351 GTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIIALPDQMFYNTGILTYVWVLSN 410

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK   R+ KVQLI+AT L+  +R   G+KR+ + +D   QI  IY      + S++ D  
Sbjct: 411 RKASIRKNKVQLIDATGLFARMRKPLGEKRKYLTEDNIAQIARIYGDFTEDEHSKIFDTC 470

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--------------SFWLD 517
            FG+  + V RPLR++F      + RL     ++ L+   +                   
Sbjct: 471 EFGFHEVTVERPLRLNFTATPERIERLWEQTPFKNLATSKKRSEPARSQEIKDGKKTQQA 530

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           I+  +        W       ++  +  K   +      + A + A G  DP AD   D 
Sbjct: 531 IIDTLETLDGQQVWKNRDEFTAVLKSAFKGAGLAVRAPLLKAIVTALGETDPTADICRDA 590

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
            G   PD  L + E +P  E I  Y  REV P+  DAY+D            ++GYEI F
Sbjct: 591 KGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVDPDK--------TKIGYEIPF 642

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            R+FYQY+         AE++ + A+I   + ++  E
Sbjct: 643 TRYFYQYEELGNPTQTLAEIQTLGAEIQASIAKLFNE 679


>gi|170683208|ref|YP_001746680.1| type I restriction-modification system DNA methylase [Escherichia
           coli SMS-3-5]
 gi|170520926|gb|ACB19104.1| type I restriction-modification system DNA methylase [Escherichia
           coli SMS-3-5]
 gi|330908617|gb|EGH37136.1| type 1 restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli AA86]
          Length = 659

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/676 (51%), Positives = 454/676 (67%), Gaps = 21/676 (3%)

Query: 1   MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ Y
Sbjct: 1   MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60

Query: 60  LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           LA   S IDL   + ++AG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F
Sbjct: 61  LAEKQSGIDLGLVLPEIAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F  TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM
Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+  
Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             VP GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+N
Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG KWEK K  VE+EHK     GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  
Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   
Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPR 408

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR
Sbjct: 409 RKNQVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           ++ + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    
Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA---- 523

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           + ++K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+ 
Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFD 583

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
             ++DYF +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID E
Sbjct: 584 RDVEDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRE 643

Query: 657 LKGVEAQIATLLEEMA 672
           LK  EA+I  LL E+A
Sbjct: 644 LKACEARIQALLNEVA 659


>gi|66769485|ref|YP_244247.1| type I restriction-modification system, M subunit, putative
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|66574817|gb|AAY50227.1| type I restriction-modification system, M subunit, putative
           [Xanthomonas campestris pv. campestris str. 8004]
          Length = 728

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 249/748 (33%), Positives = 380/748 (50%), Gaps = 99/748 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L   IW+ A  L G ++   +  V+LP  +LRRL+C LEPT+ AV +++    
Sbjct: 2   NNQTHEELKGKIWEIANRLRGPYRPPQYRLVMLPLVVLRRLDCVLEPTKEAVLKQHEKLL 61

Query: 64  GSNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             +   ++  ++ G        +  YN S Y+   L   + N   NL +YI  FS  A+ 
Sbjct: 62  AKDTPEQAMHRLLGKAADPKRKFPLYNVSAYTFEKLLGDAENIAPNLSNYINGFSPEARR 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F F   I +L+ +  L+ I K  + I+LHPD + +  M  ++EHL+ RF  + +E 
Sbjct: 122 IFERFKFGDQIDKLDASNRLFTIIKAMANIDLHPDRIDNLQMGYLFEHLVMRFNEQANEE 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   L+   +  ++K  PG++R++YDPTCGTGG L+++   +    + 
Sbjct: 182 AGDHFTPREVIRLMANLVYTGEHEVYK--PGIVRSIYDPTCGTGGMLSESEKFILGQNAA 239

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTG 289
                 L  +GQE   E+ A+C + MLI+  +       + NI +G TL    +KD F G
Sbjct: 240 A----HLHLYGQEYNDESWAICCSDMLIKDED-------TANIVKGDTLGDGKTKDGFEG 288

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           +RFHY L+NPPFG +W+  K  VE EH N G  GRFG GLP I+DGS+LFL H+  K+  
Sbjct: 289 ERFHYMLANPPFGVEWKDQKTVVENEHANHGFAGRFGAGLPAINDGSLLFLQHMIAKMHP 348

Query: 349 PPNG-----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
              G     G + AIV + SPLF+G AGSG S IRRW++E D ++ IVALP  LF+ T I
Sbjct: 349 YEEGHPDKPGSKIAIVFNGSPLFSGDAGSGPSNIRRWIIEKDWLDTIVALPDQLFYNTGI 408

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            TY+W+++NRK EER+G VQLI+ T  +   +++   KR  I+D+Q   + ++Y +  +G
Sbjct: 409 YTYVWLVTNRKPEERQGYVQLIDGTRFFRKMMKSLNNKRNEISDEQIEALTELYGNYGDG 468

Query: 463 K-----------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +                  SR+ + R FG+ ++ V RPLRM+F      +ARL+    + 
Sbjct: 469 ESADVVIDHKTGETETRVVSRVFENREFGFLKVTVERPLRMNFEATPGRIARLDEQSAFA 528

Query: 506 KLSPLHQSFWLDILKP---------------MMQQIYPYGWAESFVKESIKSNEAKTLKV 550
            L+   +       +                + +      +++  V E+     AK   +
Sbjct: 529 NLATSKKRKDEKAARQEIAEGQAMQRSIRELLAELAAKGIYSDREVFEADLEKAAKKAGI 588

Query: 551 KASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES------------ 598
           K       A   A G +DP+A    D  G   PD+ L + EN+   E             
Sbjct: 589 KLPAPIRKAIFVALGERDPQAKICRDAKGRPEPDSELRDTENISLPEGTELPLPMAFGPD 648

Query: 599 -------------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
                        I+DY  REV PHV DA++D            +VGYEI  NR FY Y+
Sbjct: 649 KPNDDLVEAFRDTIEDYMRREVLPHVADAWVDF--------SKTKVGYEIPINRHFYVYK 700

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673
           P R L  I+++++ +E +IA LL+ +  
Sbjct: 701 PPRPLPQIESDIRQLEGEIADLLKGLLA 728


>gi|332664153|ref|YP_004446941.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332967|gb|AEE50068.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 653

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/680 (36%), Positives = 372/680 (54%), Gaps = 42/680 (6%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     N IW+ A+ L G ++   + +V+LP T+LRR +C L PT+ AV ++Y      
Sbjct: 2   ANHNDHINLIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKEAVLKEYQQLDSK 61

Query: 66  -----NIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDF 118
                 +      K++   F+N S  +   L     +   +L SYI  FS N + IFE F
Sbjct: 62  YHGQDGVIDSRLNKISKQQFHNHSPLTFERLKGAPDSIAKDLVSYINGFSKNVRRIFEYF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +F   I R+ +A +LY +   FS ++LHP+ V +  M  I+EHLIR+F    +E A D  
Sbjct: 122 EFEKEIERMNEANILYLVVSRFSTVDLHPNAVSNTDMGKIFEHLIRKFNELANETAGDHF 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   LL   DD L    PG +RT++DP CGTGG L +A  ++ +     K+  
Sbjct: 182 TPREVIRLMVNLLFINDDKLLTT-PGTVRTMFDPACGTGGMLAEAQAYLREHHLEAKLYT 240

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQ+      A   + MLI+ +  +      +NI+ G +L +D F   +F Y LSN
Sbjct: 241 ----YGQDYNKRAFATAASDMLIKEVAHNGLG---ENIKFGDSLIEDQFKENKFDYLLSN 293

Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG----G 353
           PPFG  W+K +  + +E+ K G  GRFG GLP+++DG++LFL H+ +K E         G
Sbjct: 294 PPFGVDWKKQQSEITRENQKMGFAGRFGAGLPRVNDGALLFLQHMISKFEPVDEANRKYG 353

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R AIV S SPLF G AGSGES IRRW++END +EA+V+LP  +F+ T I TY+WI++NR
Sbjct: 354 SRLAIVFSGSPLFTGGAGSGESNIRRWIIENDWLEAVVSLPEQMFYNTGIGTYVWIVTNR 413

Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + R+GK+QL++A D +  +R   G KRR I ++Q   I+ +Y   E  K +++ +   
Sbjct: 414 KEKRRKGKIQLLDARDFFVPMRRSLGDKRREIAEEQIVDIVQLYGRFEETKHAKIFNNTD 473

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           FGY R+ V RPLR+ + +     +R                  LD ++ + + +      
Sbjct: 474 FGYTRVTVERPLRLRYQMTLEDKSRFLDACPH----------LLDDIQAIDKALGREPIM 523

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
           +    +       K L++K   +    F + F ++DP A PV      + PD+ L ++EN
Sbjct: 524 DWNKTDQRIR---KILRLKWKATEHKLFRDVFTQRDPEAVPVLKSKNSYEPDSELRDFEN 580

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           +P  E ++ YF REV PHVPDA+ID+           +VGYEINFN  FY + P RKL+ 
Sbjct: 581 IPLSEDVEKYFQREVLPHVPDAWIDRSKD--------KVGYEINFNSHFYVFLPPRKLEL 632

Query: 653 IDAELKGVEAQIATLLEEMA 672
           ID ELK VE +I  LL+E+ 
Sbjct: 633 IDKELKEVEEEILKLLKEVT 652


>gi|300724722|ref|YP_003714047.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Xenorhabdus nematophila ATCC 19061]
 gi|297631264|emb|CBJ91959.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Xenorhabdus nematophila ATCC 19061]
          Length = 760

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/773 (38%), Positives = 402/773 (52%), Gaps = 117/773 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE  + AV  +Y 
Sbjct: 1   MTN--SNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEQNKDAVVAEYE 58

Query: 61  AFGGSNIDLES-----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                 +  E+     F    G +F+NTS  +L  +G    ++NLE+Y+ SFS +A+ IF
Sbjct: 59  RIKPMKLLEEAQEKFLFRAANGLAFFNTSPMNLGKMGQNGIKDNLENYVQSFSKDAREIF 118

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F   +  L++A LLYK+ K F+   L PD V +  M  I+E LIRRF    +E A 
Sbjct: 119 EYFNFYEFVGLLDEANLLYKVVKKFATTPLSPDVVSNHEMGLIFEELIRRFAESSNETAG 178

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD+V L T+L+   D+  +   PG IRT+YDPT GTGGFL+  M +V        
Sbjct: 179 EHFTPRDIVDLTTSLVFTGDEDSYT--PGSIRTIYDPTAGTGGFLSAGMEYVL----KGS 232

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +V  GQEL PE++A+C   MLI+  +          I+ G+TLS D     +F Y 
Sbjct: 233 PLARMVAFGQELNPESYAICKGDMLIKGQDV-------SRIKLGNTLSNDQLPADKFDYM 285

Query: 296 LSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELP----- 349
           LSNPPFG  W+K ++ ++ EH   G  GRFG GLP++SDGS+LFLMHL +K+        
Sbjct: 286 LSNPPFGVDWKKIEEDIKSEHAVKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRDLRFVDG 345

Query: 350 -PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T IATY+W
Sbjct: 346 RAIEGSRIGIILNGSPLFTGSAGSGESEIRRYILEADLLEAIVALPTDMFYNTGIATYVW 405

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK---- 463
           ILSN+K  ER+GKVQLINAT+L + +R   G KR  + D+  R I   Y   E       
Sbjct: 406 ILSNKKVPERKGKVQLINATNLSSKMRKSLGSKRHYLTDEAIRAITLNYGQFEEADTQIQ 465

Query: 464 ----------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA------------- 500
                      S++ +  TFGYRR+ + RPLR+S  +    +  L               
Sbjct: 466 DGATDSQKPFVSKIFETHTFGYRRLTIERPLRLSVQITDQAVESLRFAPKPFNAVMADIY 525

Query: 501 --------------------------DITWRKLSP------------LHQSFWLDILKPM 522
                                        + +L              L Q   L+  + +
Sbjct: 526 DAFGSEWTEETYGSLNKVEDKIRAMIKKNFPELKEKQIKDLLDSKTWLFQKTLLEKAQKL 585

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT------- 575
              I    + +    E I  +  KT  +K        FI+A   K+P A+PV        
Sbjct: 586 QSIIGSEQFNDFNQFEQILKDALKTAGIKLETKEKKQFIDAITWKNPDAEPVIAKVLKEK 645

Query: 576 -----------DVNGEWIPDTNLTEYENVPY------LESIQDYFVREVSPHVPDAYIDK 618
                      D   E+  D +L + ENVP        + I+DYF REV PHV DA+I+ 
Sbjct: 646 AQPLYGAFNYQDKVVEFQQDGDLRDNENVPLDPTTTTTQLIEDYFKREVQPHVADAWINA 705

Query: 619 IFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              D KD EIG +GYEI FNR FY YQP R L  IDA+L  V A+I  LL+E+
Sbjct: 706 DKRDGKDGEIGMIGYEIPFNRHFYVYQPPRDLAAIDADLDKVSAEIMQLLQEV 758


>gi|119896296|ref|YP_931509.1| site-specific DNA-methyltransferase [Azoarcus sp. BH72]
 gi|119668709|emb|CAL92622.1| Site-specific DNA-methyltransferase (adenine-specific) [Azoarcus
           sp. BH72]
          Length = 613

 Score =  699 bits (1805), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/674 (38%), Positives = 372/674 (55%), Gaps = 71/674 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++GKVILPFT+LRRL+C LE T+ +V  +  A   + 
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEATKPSVLAELEAKTKAG 61

Query: 67  IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ +   ++ +G SFYNT+   L  L     + R NL +Y+ +FS  A+ IFE FDF + 
Sbjct: 62  LNPDPFLLRKSGQSFYNTAPLDLVKLLGDQDHIRQNLYTYVQAFSPAARDIFERFDFFTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KA LLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKANLLYLVTEKFANIDLHPEAVDNTSMGLVFEELIRKFAEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD +      ++RT+YDPT GTGG L+ A   + +     ++       
Sbjct: 182 IRLMVNLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSVAGEFLLEHNPQARL----TMF 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         NI  G+TLS D    ++F Y LSNPPFG 
Sbjct: 238 GQELNDESYAICKADMLIKGQDV-------ANIVAGNTLSDDGHGARKFDYMLSNPPFGV 290

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + AV +EH+  G  GRFGPGLP++SDGSMLFLMHL +K+    +GG R  IVL+ 
Sbjct: 291 EWKKVEKAVRQEHEQKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAQDGGSRFGIVLNG 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK  +R+G+V
Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWIISNRKKADRKGQV 410

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A+  W  +R   G KR+ ++D     +  ++ S    ++             I V 
Sbjct: 411 QLIDASSFWQKMRKSLGSKRKEMSDAHIATVTRLFGSFTEAEY-------------ITV- 456

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI---YPYGWAESFVKE 538
                    D  G    E  +     +P        + +  + +I     +G+    V+ 
Sbjct: 457 --------FDAAGQQLGEPQLVTNTDTPPKAPEGGRLKRVPIARIFRNQDFGYTTITVER 508

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
            +K    K +                              G+   D+ L + ENVP  E 
Sbjct: 509 PLKDEAGKPVLGSKGA----------------------RRGKPQADSALRDTENVPLGED 546

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I  YF REV PH PDA+ID+           +VGYEI FNR FY ++P R L  ID ELK
Sbjct: 547 ISAYFKREVLPHAPDAWIDETKS--------KVGYEIPFNRHFYVFEPPRSLHAIDEELK 598

Query: 659 GVEAQIATLLEEMA 672
            V A I  +LE +A
Sbjct: 599 TVSANIMKMLEGLA 612


>gi|149180786|ref|ZP_01859289.1| type I restriction-modification system methyltransferase subunit
           [Bacillus sp. SG-1]
 gi|148851576|gb|EDL65723.1| type I restriction-modification system methyltransferase subunit
           [Bacillus sp. SG-1]
          Length = 734

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 260/693 (37%), Positives = 381/693 (54%), Gaps = 48/693 (6%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M  F        NFIW  AE L G +K  D+GKVILP  +LRR +C LE T+  V EK+ 
Sbjct: 66  MINFNDK----VNFIWTIAEILRGPYKPEDYGKVILPMAVLRRFDCVLEDTKEEVLEKHE 121

Query: 61  AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
            F         E   +VA   F N S+Y  S L   S N  +NL  YI  FS  A+ I +
Sbjct: 122 QFENLPEESRDEILNRVAQQKFSNISKYDFSKLLIDSDNIADNLRDYINGFSKTARDIID 181

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F+F + I ++E+  LLY + K FS I+LHP+ V +  M  I+E LIRRF  +    A D
Sbjct: 182 YFNFDTKIEKMERNDLLYLVVKRFSEIDLHPEVVSNVEMGYIFEELIRRFSEDA--EAGD 239

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TPR+VV L   LL   D+ +  +  G+ +TLYD   GTGG  + A  ++ +      +
Sbjct: 240 HYTPREVVRLMVNLLFLEDEDILTKQ-GITQTLYDSCAGTGGMGSVAQEYLMELNPTADL 298

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   QE+  E++A+C A +LI+  E       ++NI+ G+TLS D F   +F Y +
Sbjct: 299 E----FFAQEINEESYAICKADILIKGEE-------ARNIRFGNTLSNDAFPEMKFDYLI 347

Query: 297 SNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--- 352
           +NPP+G +W+  + AV+ E++N G  GRFG GLP+ISDG +LFL HL +K++        
Sbjct: 348 TNPPYGVEWKPAEKAVKAEYENLGYNGRFGAGLPRISDGQLLFLQHLVSKMKPVTEDNPK 407

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R AI+++ SPLF G AGSGESEIRR+L+ENDL+E IV +PTDLF+ T I+TY+WIL+N
Sbjct: 408 GSRIAIIMNGSPLFTGDAGSGESEIRRYLIENDLVEGIVGMPTDLFYNTGISTYIWILTN 467

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            K+  R+GK+QL+NA D +  ++   G KR+ ++D   ++I+ +Y    + +  ++ D  
Sbjct: 468 HKSSVRKGKIQLVNAVDYYQKMKKSMGSKRKELSDKHLQEIVRLYGDFVDNEKVKIFDNE 527

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG- 530
            FGY++I V RPLR++F +D   +  L    T+  L+   +     I +    +      
Sbjct: 528 EFGYQKITVERPLRLNFKIDDARIQELHNQTTFVNLAKSKKKGEAGIQETEQGREQQEKI 587

Query: 531 ------------WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
                       +       +I     K L +  + + + A +NA  +KD  AD   D  
Sbjct: 588 EEALRSIKNDKVYKNRAEFTNILKKLFKQLDLTVNATLLKATLNALSQKDETADICIDSK 647

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G   PDT+L + ENVP  ESI +YF REV PHVP+A+ID            ++GYEI F 
Sbjct: 648 GNPEPDTDLRDTENVPLKESINEYFKREVKPHVPNAWIDDAR--------TKIGYEIPFT 699

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           R FY+Y   R  ++I  E+K +E  I   L+++
Sbjct: 700 RHFYEYTALRSSEEIKEEIKELEKDILRKLKKV 732


>gi|294054711|ref|YP_003548369.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
 gi|293614044|gb|ADE54199.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
          Length = 753

 Score =  697 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/763 (37%), Positives = 390/763 (51%), Gaps = 107/763 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  +LA +IW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV  K     
Sbjct: 1   MSDTPNNLAAYIWSLADLLRGDFKQSQYGRVILPFTLLRRLECVLEASKPAVLAKADEIK 60

Query: 64  GSNIDLES----FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
              +  E+     ++  G SF+NTS+  LS LG +    NLESY+ SFS +A+ IFE F 
Sbjct: 61  DKGLSEEAQEKMLLRAGGLSFFNTSKMDLSKLGESGIAANLESYVQSFSKDAREIFEHFK 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           FS  I  L  A LLYK+ +   G +L P  + +  M  ++E LIR+F    +E A +  T
Sbjct: 121 FSEFIGLLGDANLLYKVVQRVKGADLSPAAISNHDMGLVFEELIRKFAESSNETAGEHFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PRD+V L T+L+   DD    +  G+IRT+YDPTCGTGGFL+  M +V +         +
Sbjct: 181 PRDIVRLTTSLVFMEDDDALTKQ-GIIRTIYDPTCGTGGFLSSGMEYVHELNPQA----V 235

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +   GQEL PE++A+C A MLI+  E         NI+ G+TLS D     +F Y LSNP
Sbjct: 236 MRAFGQELNPESYAICKADMLIKGQEV-------SNIKLGNTLSNDQLYADKFDYMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  +  EH + G  GRFGPGLP++SDGS+LFL+HL +KL     GG R  I
Sbjct: 289 PFGVDWKKIEGDIRTEHTQKGFDGRFGPGLPRVSDGSLLFLLHLLSKLRDASEGGARIGI 348

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L+ SPLF G AGSGESEIRR++LE DL+E IVALPTD+F+ T IATY+W+LSN+K  +R
Sbjct: 349 ILNGSPLFTGGAGSGESEIRRYILEADLLETIVALPTDMFYNTGIATYVWVLSNKKAADR 408

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE--------NGKFSRMLD 469
           +G+VQLIN   LW  +R   G KRR + D    +I   + S E            S+   
Sbjct: 409 KGQVQLINGVHLWDPMRKSLGSKRRQLGDGHIAKITRTFGSFEAIAPQPLDEADASKTFA 468

Query: 470 -----YRTFGYRRIKVLRPLRMSFILDKTGLARLEA------------------------ 500
                   FGYRRI + RPLR S+      +  L                          
Sbjct: 469 AKLFKTHEFGYRRITIERPLRESYQFSDERIDTLRFAPKPLNAAMQWVYGEFGADWTDAE 528

Query: 501 -------------------DITWRKLSPLHQSFWLDILKPMMQQ--------IYPYGWAE 533
                                 + +L        LD    + Q+        +      +
Sbjct: 529 DCALYGKLREHEADIRAKIKADFPELKEAKIKDLLDAKTWLAQKSILLTARALQAAIGTD 588

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV---------------- 577
                +      K   +K           A   K+P A+ V                   
Sbjct: 589 QHDDMNGYDASLKATGIKLDAKEKKQITAAVSWKNPEAEKVIKKIHKSGKAEPFYGRFAV 648

Query: 578 NG---EWIPDTNLTEYENV------PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
           +G   E+ PD +L ++ENV      P     + YF +EV PHVPDA+ID   +D  D++I
Sbjct: 649 DGQIIEYKPDGDLRDFENVALAPSQPVNAVNEAYFQKEVLPHVPDAWIDGTKVDALDEQI 708

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           G VGYEI FNR FYQYQP R L+ ID +L  V   I  LL+E+
Sbjct: 709 GIVGYEIPFNRHFYQYQPPRDLEAIDRDLDAVSGDIMKLLQEV 751


>gi|227540802|ref|ZP_03970851.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183431|gb|EEI64403.1| N-6 DNA methylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 682

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 247/697 (35%), Positives = 365/697 (52%), Gaps = 47/697 (6%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFG 63
           T    +  +FIWK A  L GD+K  ++G VILPFT+L RL+  L  T+  V + +     
Sbjct: 3   TEKTTNYVSFIWKIANLLRGDYKEHEYGDVILPFTVLTRLDSVLVSTKDKVAQIRDQKGV 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            + +    + K  GY F+NTS+++L TL     N   NL SY+  FS NA+ + + +DF 
Sbjct: 63  PAEVKRLQYAKATGYPFWNTSKFTLHTLKNDPDNLEGNLRSYVEGFSPNARDVMKSYDFY 122

Query: 122 STIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + I RL+++ LLY+I   F+    +  P  V +  M +I+E LIRRF    +E A ++ T
Sbjct: 123 TVIDRLDRSDLLYQIVDAFTDPAVDFSPAAVSNEDMGSIFEELIRRFNELSNETAGEYFT 182

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   +L DPD       PG + +LYDP  GTGG L++A+    +     +I   
Sbjct: 183 PREVIQLMVEVLFDPDMNAIC-EPGFMASLYDPGVGTGGMLSEAIERAHELNEEARIE-- 239

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQEL P+T+AV  + +LI+        D ++ I  G++L+ D   G+ F+Y L NP
Sbjct: 240 --VYGQELNPQTYAVAKSDILIKG-------DDAERIYFGNSLTADRTAGRTFNYMLCNP 290

Query: 300 PFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------ 352
           PFG +W+K  D ++ E  K G  GRFG GLP+ISDGS LFL H+ +K++           
Sbjct: 291 PFGVEWKKYADPIKDEAEKRGSKGRFGAGLPRISDGSFLFLQHMISKMKPYDPADTQNAP 350

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  IV + SPLF G AG GES IRRW+LEND +EAIVALP  +F+ T I TY+W+LSN
Sbjct: 351 GTRIGIVFNGSPLFTGSAGQGESNIRRWILENDWLEAIVALPDQMFYNTGILTYIWVLSN 410

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK   R+ KVQLI+AT  +  +R   G+KR+ +  D   QI  IY     G+ S++ D R
Sbjct: 411 RKASIRKNKVQLIDATKFFARMRKPLGEKRKYLTADNIAQIARIYGDFTEGEHSKIFDTR 470

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--------------SFWLD 517
            FG+  + V RPLR++F      + R+     ++ L+   +                   
Sbjct: 471 EFGFHEVTVERPLRLNFTATPERIERVWEQTPFKNLATSKKRSEAARTQEIEDGKKTQRT 530

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           I+  +        W       ++     K   +      + A + A G  DP AD   D 
Sbjct: 531 IIDAIETLGGQRVWKNRDEFTAVLKTAFKDAGLAVRIPLLKAIVVALGETDPTADICRDT 590

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
            G   PD  L + E +P  E I  Y  REV P+  DAY+D            ++GYEI F
Sbjct: 591 KGNPEPDPALRDTEQIPLAEDIDAYIQREVIPYAADAYVDPDK--------TKIGYEIPF 642

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            R+FYQY+      +  AE++ + A+I   + ++ +E
Sbjct: 643 TRYFYQYEELGDPTETLAEIQTLGAEIQASIAKLFSE 679


>gi|229520169|ref|ZP_04409596.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
 gi|229342763|gb|EEO07754.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
          Length = 660

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/676 (51%), Positives = 453/676 (67%), Gaps = 21/676 (3%)

Query: 1   MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ Y
Sbjct: 1   MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60

Query: 60  LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           LA   S IDL   + +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F
Sbjct: 61  LAEKQSGIDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F  TI  LEKA LLY++   F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM
Sbjct: 121 KFGQTIEDLEKAKLLYRMVSYFANLDLHPDVVSDRVLSDAYEELIFKFASSVNEKAGEFM 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+  
Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             VP GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+N
Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG KWEK K  VE+EHK     GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  
Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVLS SPL NG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K   
Sbjct: 349 IVLSGSPLLNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEPR 408

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR
Sbjct: 409 RKNQVQLINLADIWTPMRKSQGSKRKYLSDEQIDDIVRAYDGFETSDNCKLFSTTDFAYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           ++ + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    
Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA---- 523

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           + ++K N  K    K SK+   A    F   DP+ +P  D  G+ I D  L + E++P+ 
Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFLIVDPQFEPALDEKGQVIADPKLKDTESIPFD 583

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
             ++DYFV+EV PHVPDA+ID    DEKD E+G +GYEINFNR+FYQY P R+L  IDAE
Sbjct: 584 RDVEDYFVQEVLPHVPDAFIDHSVRDEKDGEVGIIGYEINFNRYFYQYVPPRELTVIDAE 643

Query: 657 LKGVEAQIATLLEEMA 672
           LK  EA+I  LL E+A
Sbjct: 644 LKACEARIQALLNEVA 659


>gi|323160945|gb|EFZ46869.1| N-6 DNA Methylase family protein [Escherichia coli E128010]
          Length = 659

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/676 (50%), Positives = 452/676 (66%), Gaps = 21/676 (3%)

Query: 1   MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ Y
Sbjct: 1   MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60

Query: 60  LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           LA   S IDL   + ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F
Sbjct: 61  LAEKQSGIDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F  TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM
Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+  
Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             VP GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+N
Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG KWEK K  VE+EHK     GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  
Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   
Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPR 408

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR
Sbjct: 409 RKNQVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           ++ + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    
Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFVQQDTFKKLKPEQQAAWVQYLTDNLG-LQPYEWA---- 523

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           + ++K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+ 
Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFD 583

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
             ++DYF +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID E
Sbjct: 584 RDVEDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRE 643

Query: 657 LKGVEAQIATLLEEMA 672
           LK  EA+I  L  E+A
Sbjct: 644 LKACEARIQALPNEVA 659


>gi|289706814|ref|ZP_06503157.1| N-6 DNA Methylase [Micrococcus luteus SK58]
 gi|289556499|gb|EFD49847.1| N-6 DNA Methylase [Micrococcus luteus SK58]
          Length = 653

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/674 (38%), Positives = 369/674 (54%), Gaps = 34/674 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S  +L+NF+W  A+ L G FK   +G ++LP T+LRR+E  ++P R    E         
Sbjct: 3   SPQNLSNFVWGIADQLRGVFKPNQYGTLVLPLTILRRMEAVMDPHRGFFAELAAKGHPDF 62

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           +         G +FYN S ++L  +       R NL +Y+  FS N   +F  ++F  T+
Sbjct: 63  VLDNLVQSRTGLTFYNLSPFTLDRILQEPDLLRTNLLAYVDGFSQNVADLFTYYEFDKTV 122

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           A+L++   L+ + + F+ I+L PD V +  M  ++E LIRRF +  +E A +  TPRD V
Sbjct: 123 AKLDEHDRLFLVLQQFASIDLSPDAVSNAEMGTLFEDLIRRFAAASNETAGEHFTPRDAV 182

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   LL   DD +    P  +RT+YDPT GTGG L+     +     + ++       G
Sbjct: 183 KLLVDLLTANDDDVLTGYP--VRTVYDPTAGTGGMLSLLDERLRRMNPNAEV----RLFG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QEL  +++A+C + +L +  ++D        I +G TL  D    +RF Y LSNPP+G  
Sbjct: 237 QELNDQSYAICKSELLGKGQDAD-------GIARGDTLKNDAHLTERFDYVLSNPPYGGD 289

Query: 305 WEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           W+  + AVEKE    G   RF  G P ISDG MLFL  +A+KL     GGGRA IVL+ S
Sbjct: 290 WKASRTAVEKEIAVGGATNRFPGGTPAISDGQMLFLQLVASKLRPVSEGGGRAGIVLNGS 349

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G AGSG SEIRRWLLE+DL++ IVALPTD+F+ T IATY+W+L N K  +RRG+VQ
Sbjct: 350 PLFTGGAGSGPSEIRRWLLESDLVDVIVALPTDMFYNTGIATYVWVLDNNKPADRRGRVQ 409

Query: 424 LINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSR-----ENGKFSRMLDYRTFGYRR 477
           LI+A   +T + RN G K + ++   R+++LDIY        +N +FS++L  + FGYR 
Sbjct: 410 LIDARTFFTKLRRNVGSKNKELSTADRQRVLDIYRDFDAQSEDNAEFSKVLTAQDFGYRE 469

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I V RPL++ F +    +A   A     KL    +S     L  +  ++    W      
Sbjct: 470 ITVERPLQLRFEVGDATIAAAFATKPVDKLPDDGRSALETALASLRGRV----WDHQPTF 525

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLE 597
                   K   V A    + A   A G  DP A+   +  GE  PDT+L + E VP+  
Sbjct: 526 VLELKKALKEHGVTAGAPLVKALAGAIGVHDPEAEVAKNKKGEPEPDTSLRDTELVPFGR 585

Query: 598 SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
            I +YF  EV+PHVP A+I        D+   ++GYEI F R FY+Y P R L++IDAEL
Sbjct: 586 DIHEYFEAEVAPHVPGAWI--------DESKTKIGYEIPFTRLFYKYVPPRPLEEIDAEL 637

Query: 658 KGVEAQIATLLEEM 671
           K + A+I  LL+E+
Sbjct: 638 KQLTAEIIELLQEV 651


>gi|53718591|ref|YP_107577.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei K96243]
 gi|52209005|emb|CAH34944.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei K96243]
          Length = 613

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/672 (38%), Positives = 374/672 (55%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV  ++ A     
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKG 61

Query: 67  IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++ E F+   V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF +
Sbjct: 62  LNPEPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYT 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + RL KA LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+
Sbjct: 122 QVERLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +      ++R +YDPT GTGG L+ A   + +     ++      
Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVARL----RM 237

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL  E++A+C A MLI+  +        +NI  G+TLS D   G++F Y LSNPPFG
Sbjct: 238 YGQELNDESYAICKADMLIKGQDV-------ENIVAGNTLSDDGHAGRQFDYMLSNPPFG 290

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K +  V  E++  G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+
Sbjct: 291 VEWKKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLN 350

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G 
Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGF 410

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+A+  W  +R   G KRR ++D+    +  ++ +    + + + D       R  V
Sbjct: 411 VQLIDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVV 470

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                +  +     +  +     +R                       +G+    V+ ++
Sbjct: 471 PAGSNVPNVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERAL 510

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           +  + K +                G K  +        G+   D++L + ENVP  + I 
Sbjct: 511 RDEQGKVV---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIG 548

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF REV PH PDA+I        D++  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 549 VYFEREVLPHAPDAWI--------DEQKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600

Query: 661 EAQIATLLEEMA 672
            A I  +LEE+A
Sbjct: 601 SANIMRMLEELA 612


>gi|167718507|ref|ZP_02401743.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei DM98]
          Length = 613

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/672 (38%), Positives = 374/672 (55%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+SAV  ++ A     
Sbjct: 2   NHQALSSFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLESTKSAVLAEFEAKSKKG 61

Query: 67  IDLESFV--KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++ E F+   V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF +
Sbjct: 62  LNPEPFLLRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYT 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + RL KA LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+
Sbjct: 122 QVERLAKADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPRE 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +      ++R +YDPT GTGG L+ A   + +     ++      
Sbjct: 182 VIRLMVNLLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVARL----RM 237

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL  E++A+C A MLI+  +        +NI  G+TLS D   G++F Y LSNPPFG
Sbjct: 238 YGQELNDESYAICKADMLIKGQDV-------ENIVAGNTLSDDGHAGRQFDYMLSNPPFG 290

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +W+K +  V  E++  G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+
Sbjct: 291 VEWKKVEKTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLN 350

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G 
Sbjct: 351 GSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGF 410

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLI+A+  W  +R   G KRR ++D+    +  ++ +    + + + D       R  V
Sbjct: 411 VQLIDASSFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVV 470

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                +  +     +  +     +R                       +G+    V+ ++
Sbjct: 471 PAGSNVPDVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERAL 510

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
           +  + K +                G K  +        G+   D++L + ENVP  + I 
Sbjct: 511 RDEQGKVV---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIG 548

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YF REV PH PDA+I        D++  +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 549 VYFEREVLPHAPDAWI--------DEQKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 600

Query: 661 EAQIATLLEEMA 672
            A I  +LEE+A
Sbjct: 601 SANIMRMLEELA 612


>gi|261211185|ref|ZP_05925474.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|260839686|gb|EEX66297.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
          Length = 788

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/800 (35%), Positives = 397/800 (49%), Gaps = 143/800 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ AV  +  
Sbjct: 1   MTNN--NFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKEAVVIQAE 58

Query: 61  AFGGSNIDLESFVK-----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                N+  E+  K             G +F+NTS  +L  +G ++ + NLE YI SFS 
Sbjct: 59  KIKAMNLPEEAQEKMLFRATQTPDNAKGLTFFNTSPMNLGKMGQSDIKANLERYIQSFSA 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           +A+ IFE F F   +  L  A LLYK+ K F+  +L P  + +  M  ++E LIRRF   
Sbjct: 119 DAREIFEHFKFDEFVGLLNDANLLYKVVKKFATTDLSPKAISNHDMGLVFEELIRRFAES 178

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRD+V L T+L+   DD    +  G+IRT+YDPT GTGGFL+  M +V +
Sbjct: 179 SNETAGEHFTPRDIVRLTTSLVFMEDDEALTKD-GIIRTIYDPTAGTGGFLSSGMEYVHE 237

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D    
Sbjct: 238 LNPKA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPA 286

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +F Y LSNPPFG  W+K +  ++ EH   G  GRFG GLP++SDGS+LFLMHL +K+  
Sbjct: 287 DKFDYMLSNPPFGVDWKKIEGEIKDEHTLKGFDGRFGAGLPRVSDGSLLFLMHLLSKMRD 346

Query: 349 PP------NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                   + GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIVALPTD+F+ T 
Sbjct: 347 THSVDGTVSDGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVALPTDMFYNTG 406

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE- 460
           IATY+W+LSN+K  ER+G+VQLI+ ++L   +R   G KR ++++D  + I   +   E 
Sbjct: 407 IATYVWVLSNKKAAERKGQVQLIDGSNLCGKMRKSLGSKRNVMSEDDIKTITRTFGDFEV 466

Query: 461 ----------------------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                                           S++ D   FGYRR+ + RPLR+S  +  
Sbjct: 467 VDARELDKPAEQKSSRGRQAANPKADTPKTFASKIFDTHEFGYRRLTIERPLRLSAQITD 526

Query: 493 TGLARLEA--------------------------------------------DITWRKLS 508
             +  L                                              ++  +++ 
Sbjct: 527 GAVDSLRFAPKPFNAVMQAVFEQFGTEWDDNTYGTLIEVEAEVRALIKADFPELKEKQIK 586

Query: 509 P-------LHQSFWLDILKPMMQQIYPYG------WAESFVKESIKSNEAKTLKVKASKS 555
                   L Q   +D  K +   +            +    E       K   +K    
Sbjct: 587 DVLDSKLWLSQKTLMDDAKALQVAMGDKLGGKAQQSDDFNQFELTLKGAFKATGIKFDAK 646

Query: 556 FIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYLE 597
               F +A   K   A+PV                   G   E+  D +L + ENVP   
Sbjct: 647 QKKQFTDAITWKSQDAEPVIKKVLKEDAQPLYGAFDYKGKVVEFQQDGDLRDNENVPLDP 706

Query: 598 S------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           S      I+ YF REV PHV DA+I+    D+KD EIG VGYEI FNR FY YQP R L+
Sbjct: 707 SVSTSTLIESYFKREVQPHVADAWINADKRDDKDAEIGVVGYEIPFNRHFYVYQPPRALE 766

Query: 652 DIDAELKGVEAQIATLLEEM 671
            IDA+L  V   I TLL+E+
Sbjct: 767 AIDADLDAVSKDIMTLLQEV 786


>gi|229491487|ref|ZP_04385308.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus erythropolis SK121]
 gi|229321168|gb|EEN86968.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus erythropolis SK121]
          Length = 658

 Score =  695 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 267/684 (39%), Positives = 368/684 (53%), Gaps = 39/684 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S   +AN IW  A+ L GD+K  ++G+VILP TLLRRL+  +EPTR AVR +  
Sbjct: 1   MT-TAPSHTKMANDIWSIADLLRGDYKRHEYGQVILPLTLLRRLDTVMEPTRDAVRARDS 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFEDF 118
           A    N         A   FYNTS    ST+ +       NL  YI  FS N + +   F
Sbjct: 60  ALDMQN-KQRMLEIAAKLPFYNTSAQDFSTIAADANSVAKNLRDYINGFSSNIREVLARF 118

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D  + I RL  A LLY++   F+ ++   D + +  M  ++EHLIRRF  + +E A +  
Sbjct: 119 DLDNQITRLASAKLLYQVVGKFAEMKD-LDKLSNHDMGYVFEHLIRRFAEDSNETAGEHF 177

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   LL+ PD        G +  + DP CGTGG LT A +H+       ++  
Sbjct: 178 TPREVIKLMVNLLIAPDADTVA-GEGQVINILDPACGTGGMLTAAEDHIKSINPKAEV-- 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQEL  E+ A+C + ML+R    D        ++ G++ S+D +  K+F Y L+N
Sbjct: 235 --YLFGQELNGESWAICQSDMLMRSQRGD--------VKFGNSFSEDGYESKKFDYMLAN 284

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG +W+K KD V  E + G  GRFG G P+I+DGS LFL H+ +K+E     G R AI
Sbjct: 285 PPFGVEWKKVKDDVLDEAERGHAGRFGAGTPRINDGSFLFLQHMISKMEPVEGKGARLAI 344

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + SPLF G AGSGESEIRRW+LEND +E +VALP  LF+ T I+TY WILSNRK ++ 
Sbjct: 345 VFNGSPLFTGAAGSGESEIRRWILENDWLEGVVALPDQLFYNTGISTYFWILSNRKPKKL 404

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-------- 469
           + KV L++A D W  +R   G KR+ I+  Q   I  +YV                    
Sbjct: 405 QKKVILLDARDQWQKMRKSLGDKRKKISAAQINHITKLYVDALEIAECTDHPDNGKIKIF 464

Query: 470 -YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             R FGYRRI V RPL++ F + +  LA LE        +   +S  +  L+  +  I+ 
Sbjct: 465 GTREFGYRRITVERPLKLRFEISEATLAALEEGKGLS--AWDGRSMAVLALRRSIGNIW- 521

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           +   E+  +      +A       +++ + AF  A    DP  +  T  +GE + D +L 
Sbjct: 522 WTKKEAAEELRALIADADAEWPSKTQAMLKAFWRAVSVSDPAGEVQTSRDGEVLADPDLR 581

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           +YENVP  E I +YF REV+ HVPDA+ID+        E  +VGYEI   R FY Y P R
Sbjct: 582 DYENVPLDEDIDEYFAREVTSHVPDAWIDR--------EKTKVGYEIPITRHFYAYTPPR 633

Query: 649 KLQDIDAELKGVEAQIATLLEEMA 672
            L +IDAEL  +E QI  LL E+ 
Sbjct: 634 PLVEIDAELSELENQIQKLLSEVT 657


>gi|52426220|ref|YP_089357.1| HsdM protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308272|gb|AAU38772.1| HsdM protein [Mannheimia succiniciproducens MBEL55E]
          Length = 732

 Score =  694 bits (1791), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/752 (30%), Positives = 359/752 (47%), Gaps = 101/752 (13%)

Query: 1   MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT        +++++ IW  A  L G ++   + +V+LP  +L R +  L P   A++ K
Sbjct: 1   MTTDNLHTKQSTISSVIWSMANMLRGTYRPPQYRRVMLPLIVLARFDAILAPYTDAMKAK 60

Query: 59  YLAFGGSN--IDLESFVKVA---------GYSFYNTSEYSLSTL--GSTNTRNNLESYIA 105
                         +  ++A             YNTS Y+L  L     +   NL  Y+ 
Sbjct: 61  ADELQAMGGKAPEGALYEMALTKAADPNRKQPLYNTSGYNLQRLLADQDHIAANLVKYLQ 120

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIY 159
            FS  AK IF+ F+F + I +L+ +  LY +   F      +GI+L P ++ +  M  I+
Sbjct: 121 GFSAKAKDIFDKFEFENEIEKLDSSNRLYAVVSQFQKDLKENGIDLSPQSISNLQMGYIF 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+R+F  + +E A D  TPR+V++L   L+ + D       P  I ++YDPT GTGG 
Sbjct: 181 EELVRKFNEQANEEAGDHFTPREVINLMVNLIFEEDQQRLS-QPHAIASIYDPTAGTGGM 239

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L+++  H+       K+       GQE   E++A+C A +LI+        +   N+  G
Sbjct: 240 LSESEKHLKSYNDSIKLQ----LFGQEYNAESYAICCADLLIK-------DEPISNLVFG 288

Query: 280 STL-------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            TL               D    K+F Y  SNPPFG +W+ ++D +  E K+G  GRFG 
Sbjct: 289 DTLGVKNSKNTGTGFVPHDGHQTKKFDYMFSNPPFGVEWKNEQDFINDEAKSGFAGRFGA 348

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GLP+I+DGS+LFL H+ +K++    GG R A+V + SPLF G AGSGES IRRW++END 
Sbjct: 349 GLPRINDGSLLFLQHMISKMKPVEEGGSRIAVVFNGSPLFTGDAGSGESNIRRWIIENDW 408

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIN 445
           +EAI+ALP  LF+ T I TY+WI+SN+K++ R+GKVQLI+ T  +  + ++ G KR  ++
Sbjct: 409 LEAIIALPDQLFYNTGIYTYVWIVSNKKSDRRKGKVQLIDGTQHYQKMAKSLGDKRNELS 468

Query: 446 DDQRRQILDIYVSRENGKF--------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             Q   +  +Y   ++G          S++ + + FGY ++ V RPLR++F   +  + +
Sbjct: 469 PAQIADLTRLYADFKDGASGRISTKFCSKIFNNQDFGYLKLTVERPLRLNFQAGQERIEK 528

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSN 543
           ++    +  L+   +      +K    +              I    +        +   
Sbjct: 529 VKTQTAFINLAVSKKRKDEAQIKAEEAEGQRQQQAILAALSTIGDGLYQNRTAFLKLLDK 588

Query: 544 EAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI---- 599
             K L  K       A I A   +D  AD   D  G    D+ L + E VP  + I    
Sbjct: 589 ALKGLDFKLGAPLKKAIIEALSERDQSADICLDSKGNPEADSQLRDTELVPLPKEITLPL 648

Query: 600 --------------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
                               + Y   EV PHV  A+I        D    +VGYEI  NR
Sbjct: 649 PVDYGEGKTDELVKQVKAHCEAYLQAEVLPHVDHAWI--------DYSKTKVGYEIPINR 700

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            FYQYQP R L +I AE+  +EA+I  +L  +
Sbjct: 701 HFYQYQPPRALDEIKAEISELEAEIMAMLGNV 732


>gi|297581972|ref|ZP_06943892.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
 gi|297533839|gb|EFH72680.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
          Length = 660

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/676 (51%), Positives = 453/676 (67%), Gaps = 21/676 (3%)

Query: 1   MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ Y
Sbjct: 1   MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60

Query: 60  LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           LA   S IDL   + +VAG++FYNTSEYSL TLG+++T +NLE YI+ FS N + IF++F
Sbjct: 61  LAEKQSGIDLGLVLPEVAGFAFYNTSEYSLETLGASDTGDNLEHYISQFSKNVRTIFDEF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F  TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM
Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+  
Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             VP GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+N
Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG KWEK K  VE+EH+     GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  
Sbjct: 289 PPFGIKWEKAKKEVEREHQQLKYAGRFGPGLPSISDGSMLFLLHLVSKMEKPENGGGRVG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WILSN K   
Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILSNHKEVR 408

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+  VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F +R
Sbjct: 409 RKNLVQLINLVDIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFETSDNCKIFLTTDFAFR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           ++ + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    
Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFAQQDTFKKLKPEQQAAWVHHLTDNLG-LQPYEWA---- 523

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           + ++K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+ 
Sbjct: 524 RLAVKKNNNKGNFGKCSKALATALTAHFLKVDPQFEPALDEKGQVIADPKLKDTESIPFD 583

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
             ++DYF +EV PHVPDA+ID    DEKD E+G VGYEINFNR+FYQY P R+L  ID E
Sbjct: 584 RDVEDYFAQEVLPHVPDAFIDHSVRDEKDGEVGIVGYEINFNRYFYQYAPPRELSVIDGE 643

Query: 657 LKGVEAQIATLLEEMA 672
           LK  EA+I  LL E+A
Sbjct: 644 LKACEARIQALLNEVA 659


>gi|21229083|ref|NP_635005.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907637|gb|AAM32677.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 714

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 243/734 (33%), Positives = 362/734 (49%), Gaps = 85/734 (11%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+E   +   + NFIW  A+D L   +    +  VILP T+LRRL+  LEPT+ AV +  
Sbjct: 1   MSEN--NLNWITNFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMK 58

Query: 60  LAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKA 113
            A   + I    +   + A  +FYNTS+++L  L         + + E+Y+  FS N + 
Sbjct: 59  AALDSAGIANQDQPLRQAAEQAFYNTSKFTLRDLKSRSSQQQLKADFEAYLDDFSPNVQD 118

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNIY 159
           I ++F+F + I RL KA  L K+ + F  S I L P+             + +  M  I+
Sbjct: 119 ILDNFEFRNQIPRLSKADALGKLIEKFLDSSINLSPNPVMNGNDSVKHYGLDNHAMGTIF 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+RRF  E +E A +  TPRD V L   L+  P       S      LYD  CGTGG 
Sbjct: 179 EELVRRFNEENNEEAGEHWTPRDAVKLMARLIFLPIADQIVSS---TYLLYDGACGTGGM 235

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT A   +      H        +GQE+  ET+A+  A +L++        D + N+  G
Sbjct: 236 LTVAEEELKQLAQDHGKQVATHLYGQEINAETYAIAKADLLLKG-----EGDAADNLVGG 290

Query: 280 ---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---GPGLP---- 329
              STLS D F  ++F + LSNPP+GK W+ D + +  +    +  RF     G P    
Sbjct: 291 PEYSTLSNDAFPARKFDFMLSNPPYGKSWKSDLERMGGK-DGIKDPRFTIEHAGDPEYSL 349

Query: 330 --KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + SDG MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +
Sbjct: 350 LTRSSDGQMLFLVNMLSKMKHDTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWL 409

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIVALP ++F+ T IATY+W+L NRK E R+GK+QLI+AT  +  +R N GKK   + +
Sbjct: 410 EAIVALPLNMFYNTGIATYIWVLGNRKPEHRKGKIQLIDATQWYRPLRKNLGKKNCELGE 469

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           +  ++I D +++ E  + S++     FGY ++ V RPLR++  L    +A      T   
Sbjct: 470 EDIQKICDTFLTFEESEQSKIFPNAAFGYWKVTVERPLRLAVDLTPDAIATFRKACT--- 526

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
                +     ++     Q+ P    +           A    VK +   +    N+  R
Sbjct: 527 --EAGEEQLAALVDKAAVQLGPGLHNDFNDFLPSFEALASKAGVKLTAKRLKLLQNSLSR 584

Query: 567 KDPRADPVTDV--------------------NG-----EWIPDTNLTEYENVPYLE--SI 599
           KD  A PV                       NG     E+ PDT L + E VP LE   I
Sbjct: 585 KDESAAPVIKKVHKPGKAEADPMHGRFEATVNGKLCVVEYEPDTELRDTEQVPLLEEGGI 644

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           + + +REV PH  DA+I        D+   + GYEI+F R+FY+ QP R L++I A++  
Sbjct: 645 EAFILREVLPHASDAWI--------DESSVKTGYEISFTRYFYKPQPLRSLEEIRADILA 696

Query: 660 VEAQIATLLEEMAT 673
           +E +   LL+E+  
Sbjct: 697 LEKETEGLLDEIIG 710


>gi|221233593|ref|YP_002516029.1| type I restriction-modification system methylation subunit
           [Caulobacter crescentus NA1000]
 gi|220962765|gb|ACL94121.1| type I restriction-modification system methylation subunit
           [Caulobacter crescentus NA1000]
          Length = 630

 Score =  691 bits (1783), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/674 (38%), Positives = 373/674 (55%), Gaps = 67/674 (9%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + +  SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV  ++     
Sbjct: 19  SMNHQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAA 78

Query: 65  SNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             +D E F++ V+G  FYNT +  L+ +   + N   NL +Y+ +FS   + IFE F+F 
Sbjct: 79  QGVDPEPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFH 138

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + I RL KAGLLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR
Sbjct: 139 AQIERLAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPR 198

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   L+   DDA     PG++RT+YDPT GTGG L+ A   +       K+     
Sbjct: 199 EVIRLMVELIFVEDDAALS-EPGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAKL----S 253

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL PE++A+C A MLI+    D       NI  G+TLS D     +F Y LSNPPF
Sbjct: 254 MYGQELNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPF 306

Query: 302 GKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           G +W+K +  V  E +  G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL
Sbjct: 307 GVEWKKVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVL 366

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K   RRG
Sbjct: 367 NGSPLFTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRG 426

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           K+QLI+A+  W  +R   G KR+ + +D    I  ++ +    + + + D       ++ 
Sbjct: 427 KLQLIDASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKVI 486

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           V                 +  +    KL+PL +                +G+    V+  
Sbjct: 487 VE----------AGSAPPVAPEGGKVKLAPLSKILPNSA----------FGYRTITVERP 526

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI 599
           +     K +  +  K                        G+   D+   + ENVP  E +
Sbjct: 527 LVDEAGKPVLGQKGK----------------------NKGKPQADSARRDTENVPLSEDV 564

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           + YF REV PH PDA+ID            + GYEI FNR FY ++P R L  IDA+L+ 
Sbjct: 565 ETYFAREVLPHAPDAWIDADK--------TKTGYEIPFNRHFYVFEPPRDLAQIDADLRA 616

Query: 660 VEAQIATLLEEMAT 673
           V  QI  ++ E+A 
Sbjct: 617 VTDQIKAMIAELAA 630


>gi|194288965|ref|YP_002004872.1| type I restriction-modification methylase m subunit, n-6 DNA
           methylase [Cupriavidus taiwanensis LMG 19424]
 gi|193222800|emb|CAQ68803.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Cupriavidus taiwanensis LMG 19424]
          Length = 612

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 265/672 (39%), Positives = 375/672 (55%), Gaps = 68/672 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L++FIW  A+ L G++K +++G+VILPFT+LRRL+C L  T+ AV  ++ A   + 
Sbjct: 2   NHQALSSFIWSVADLLRGNYKQSEYGRVILPFTVLRRLDCVLAITKPAVLAEFEAKTQAG 61

Query: 67  IDLESFV-KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           I+ + F+ + A  SFYN S   L  L     + R NL SY+  FS +A+ IFE FDF   
Sbjct: 62  INPDPFLQRKAKQSFYNVSPLDLVKLLGDQDHIRQNLYSYLQGFSASARDIFERFDFHMQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KA LLY + + F+ I+LHPDTV +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKANLLYLVTEKFANIDLHPDTVDNAQMGLVFEELIRKFAEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   D  +      ++RT+YDPT GTGG L+ A   + +     ++      +
Sbjct: 182 IRLMVNLIFIEDSDVLTAGNAVVRTIYDPTAGTGGMLSVADEFLREHNPSARL----TMY 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         NI  G+TLS D    ++F Y LSNPPFG 
Sbjct: 238 GQELNDESYAICKADMLIKGQDV-------GNIVAGNTLSDDGHGARKFDYMLSNPPFGV 290

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + AV +EH+  G  GRFGPGLP++SDGSMLFLMHL +K+    +GG R  IVL+ 
Sbjct: 291 EWKKVEKAVRQEHEQRGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPAADGGSRFGIVLNG 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K E+R+G V
Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPEDRKGWV 410

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A+  W  +R   G KR+ +ND+Q   +  ++      + + +LD       R  V 
Sbjct: 411 QLIDASSFWQKMRKSLGSKRKEMNDEQIAMVTRLFGDFVEAETATVLDADGKEVGRYVVA 470

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                      T            KL+P+ + F          +   +G+    V+  ++
Sbjct: 471 ----------ATAQPPEAPVGGRVKLAPISRIF----------RNEEFGYTTITVERPLR 510

Query: 542 SNEAKT-LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
               +  L VK  +                             D++L + ENVP  E I 
Sbjct: 511 DENGQLMLGVKGKQKGK-----------------------PQADSSLRDTENVPLDEEID 547

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            YFVREV PH PDA++D            +VGYEI FNR FY ++P R L  ID ELK V
Sbjct: 548 AYFVREVLPHAPDAWVDDDKS--------KVGYEIPFNRHFYVFEPPRDLHTIDEELKAV 599

Query: 661 EAQIATLLEEMA 672
              I  +LEE+A
Sbjct: 600 SVNIMRMLEELA 611


>gi|326201378|ref|ZP_08191250.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
 gi|325988946|gb|EGD49770.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
          Length = 669

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/686 (37%), Positives = 373/686 (54%), Gaps = 37/686 (5%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + + +     NFIWK A+ L GD+K +++G V+LPFT+L RL+  L  T+  V E     
Sbjct: 4   QNSLNINEYTNFIWKIADLLRGDYKQSEYGDVVLPFTVLCRLDSVLLATKDKVLEIDKTS 63

Query: 63  G-GSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119
             G  +  + F +  G  FYN S ++   L     N   NL  YI SFS N + I E F+
Sbjct: 64  NFGDKVKEKLFEQATGMKFYNKSNFTFRKLKDDAPNIAENLRDYITSFSANVQEIMEAFN 123

Query: 120 FSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             + I RL+KAGLLY I   ++  I+L P+ VP+ +M  I+E LIRRF    +E A +  
Sbjct: 124 IYAQIERLDKAGLLYMIISKYADEIDLSPEKVPNDLMGYIFEELIRRFSEISNETAGEHF 183

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L  +L+ + D A   E  G + +LYDP  GTGG L    +++        +  
Sbjct: 184 TPREVIRLMVSLIFNEDGAELSED-GKMTSLYDPAAGTGGMLAIGSDYLKSLNQTIYVDC 242

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQEL P T+AVC + MLI+  + D        I +G++ ++D   GK F Y L N
Sbjct: 243 ----YGQELNPMTYAVCKSDMLIKGQQYDR-------IYRGNSFTEDGTAGKTFSYMLCN 291

Query: 299 PPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG +W+K   A+++E+ K G  GRFG GLP+ISDGS LFL H+ +K++    GG R A
Sbjct: 292 PPFGVEWKKYDKAIKEENEKLGFAGRFGAGLPRISDGSFLFLQHMISKMKPVDEGGSRIA 351

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IV + SPLF G AGSGESEIRRW++END +E IVALP  +F+ T I+TY+WI++NRK++ 
Sbjct: 352 IVFNGSPLFTGDAGSGESEIRRWIIENDWLETIVALPDQMFYNTGISTYIWIVTNRKSKL 411

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+GK+QLINA D    +R   G KR  I D Q  +I+ I+      ++S++ D   FGY 
Sbjct: 412 RQGKIQLINAADFSEKMRKSLGSKRNQITDTQINEIVGIHKDFLPNEYSKIFDNEDFGYW 471

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ----------I 526
           ++ V RP+R +F   +  +  L      +K      S      +PM Q           +
Sbjct: 472 KVTVERPVRYNFSCCEDRVYSLPIVFQKKKNCTWSWSQNDLDGQPMPQDLIDLKNDLVAL 531

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
               +++    +++ +   K  K+ A         N    +D       D  G  + +T+
Sbjct: 532 GNEVYSDEKQFKALIAPVVKKHKLTAM-QQRTLLYNVLSAEDENGTIYLDAKGNQVANTS 590

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L +YE VP    IQ+YF +EV PHVPDA+I        D+   + GYEI F R FY+Y P
Sbjct: 591 LRDYETVPLKTDIQEYFAQEVLPHVPDAWI--------DESKTKKGYEIPFTRQFYKYVP 642

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMA 672
            R    I +E+K +E +I   + ++ 
Sbjct: 643 LRASSVILSEIKALEDKIQADIADLF 668


>gi|260578141|ref|ZP_05846062.1| type I restriction-modification system, M subunit N-6
           adenine-specific DNA methylase [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603780|gb|EEW17036.1| type I restriction-modification system, M subunit N-6
           adenine-specific DNA methylase [Corynebacterium jeikeium
           ATCC 43734]
          Length = 689

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 240/697 (34%), Positives = 363/697 (52%), Gaps = 46/697 (6%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T    S  + IW  AE L GD+K  ++G V+LPFT+L RL+  L  T+ AV +       
Sbjct: 9   TEKPTSHVSLIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKATSVP 68

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
           + I    + K  GY F+NTS ++L TL   + N   NL  Y+ +F+  A+ + E ++F +
Sbjct: 69  NKIKELRYAKETGYPFWNTSNFTLKTLLDDADNLEQNLTYYVQAFAPAAREVMEAYNFYN 128

Query: 123 TIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            I RL+K+ LLY + K F+   + LHPD V +  M  I+E LIRRF    +E A +  TP
Sbjct: 129 VIERLDKSDLLYHVLKEFTSAKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTP 188

Query: 181 RDVVHLATALLLDPDDALFKE-SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           R+V+ L   LL +P++ + +  + G + +LYDP  GTGG L+ A  HV D     ++   
Sbjct: 189 REVISLMVNLLFNPEEDINRLCADGAMASLYDPGVGTGGMLSTAAQHVNDLNESARLE-- 246

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQEL P+T+AV  + ++I+        +  + I  G++L+ D   G RF Y L NP
Sbjct: 247 --VYGQELNPQTYAVAKSDIMIKG-------ERQERIYFGNSLTNDKTAGMRFDYMLCNP 297

Query: 300 PFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPN------G 352
           PFG  W+K  D +  E +  G  GRFG G P++SDGS LFL H+ +K++           
Sbjct: 298 PFGVNWKKYADPILDEAEHKGYQGRFGAGTPRVSDGSFLFLQHMISKMKPYDPMDLVNAA 357

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  IV + SPLF G AG GESEIRRW+LEND +EAI+ALP  +F+ T I TY+W+LSN
Sbjct: 358 GTRIGIVFNGSPLFTGGAGQGESEIRRWILENDWLEAIIALPDQMFYNTGILTYIWVLSN 417

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           +K   R+ KVQLI+AT  +  +R   G+KR+ + +     I  IY + +  + SR+ +  
Sbjct: 418 KKERHRKNKVQLIDATQYFQRMRKPLGEKRKELTETNIADITRIYGAFQETEESRIFETE 477

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS--------------PLHQSFWLD 517
            F Y  + V RPLR+SF      +  L+    +  L+                 +     
Sbjct: 478 DFAYHEVVVERPLRLSFQATPDAIESLKQTKPFTDLAMSRKRTEPARTEEIDAGKRVQNA 537

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           I+  +        +        +     K    K   + +   +   G K+P AD   D 
Sbjct: 538 IIATLEALDAERVYLNRDEFTDLIRESIKKRGEKIGIAALRKIVAGLGTKNPDADICMDT 597

Query: 578 NGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
            G   PD +L + E +P+ E I+ YF REV P+ PDA+ID            ++GYEI F
Sbjct: 598 KGNPEPDADLRDTEQIPFREDIEAYFQREVIPYAPDAWIDHDK--------TKIGYEIPF 649

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            R+FY+Y+      +  AE++ + A I   + ++ +E
Sbjct: 650 TRYFYKYEELGNPVETLAEIQTLSASIQADITKLFSE 686


>gi|16124873|ref|NP_419437.1| type I restriction-modification system, M subunit [Caulobacter
           crescentus CB15]
 gi|13421829|gb|AAK22605.1| type I restriction-modification system, M subunit, putative
           [Caulobacter crescentus CB15]
          Length = 611

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/672 (38%), Positives = 372/672 (55%), Gaps = 67/672 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C LEPT++AV  ++       
Sbjct: 2   NHQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLEPTKAAVLAEHEKRAAQG 61

Query: 67  IDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           +D E F++ V+G  FYNT +  L+ +   + N   NL +Y+ +FS   + IFE F+F + 
Sbjct: 62  VDPEPFLRRVSGAGFYNTHKMDLTRVLGDADNVAANLYAYLQAFSPAVRDIFERFEFHAQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL KAGLLY + + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 IERLAKAGLLYMVAEKFTRIDLHPEAVDNHQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DDA     PG++RT+YDPT GTGG L+ A   +       K+      +
Sbjct: 182 IRLMVELIFVEDDAALS-EPGVVRTIYDPTAGTGGMLSVAEERLLQQNPGAKL----SMY 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+    D       NI  G+TLS D     +F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQPVD-------NIVFGNTLSDDGHHAAKFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V  E +  G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKVEKIVRAEAEQQGYNGRFGPGLPRVSDGSLLFLLHLLSKMRPAVDGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR LLE+DL+EAIVALPTD+F+ T IATY+WI+SN+K   RRGK+
Sbjct: 350 SPLFTGGAGSGESEIRRHLLESDLVEAIVALPTDMFYNTGIATYVWIVSNKKPAARRGKL 409

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           QLI+A+  W  +R   G KR+ + +D    I  ++ +    + + + D       ++ V 
Sbjct: 410 QLIDASGFWRKMRKSLGSKRKEMGEDDIAAITRLFGAFVEAELASVFDAEGKPVDKVIVE 469

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                           +  +    KL+PL +                +G+    V+  + 
Sbjct: 470 ----------AGSAPPVAPEGGKVKLAPLSKILPNSA----------FGYRTITVERPLV 509

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQD 601
               K +  +  K                        G+   D+   + ENVP  E ++ 
Sbjct: 510 DEAGKPVLGQKGK----------------------NKGKPQADSARRDTENVPLSEDVET 547

Query: 602 YFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVE 661
           YF REV PH PDA+ID            + GYEI FNR FY ++P R L  IDA+L+ V 
Sbjct: 548 YFAREVLPHAPDAWIDADK--------TKTGYEIPFNRHFYVFEPPRDLAQIDADLRAVT 599

Query: 662 AQIATLLEEMAT 673
            QI  ++ E+A 
Sbjct: 600 DQIKAMIAELAA 611


>gi|254383776|ref|ZP_04999124.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces sp. Mg1]
 gi|194342669|gb|EDX23635.1| type I restriction-modification system methyltransferase subunit
           [Streptomyces sp. Mg1]
          Length = 632

 Score =  686 bits (1771), Expect = 0.0,   Method: Composition-based stats.
 Identities = 257/657 (39%), Positives = 375/657 (57%), Gaps = 50/657 (7%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTL--GSTNTR 97
           LRRLEC LEPTR  V E    F G  ID + F++  +G+SFYN S+ +L  +     N  
Sbjct: 2   LRRLECVLEPTREKVAETVDRFAGQEIDTDHFLRKASGHSFYNKSDLTLKKIAADPQNAA 61

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            NL+ Y+ +FSDNA+ + + ++F+  + +L+ A LLY++   F+ ++LHPD VP+  M  
Sbjct: 62  KNLQIYVGAFSDNAREVLDKYEFNQQVRKLDSANLLYQVIGRFTDLDLHPDVVPNHNMGY 121

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E LIRRF  + +E A +  TPR+V+ L   LL+ PD       PG++RT+ DP CGTG
Sbjct: 122 IFEELIRRFAEQSNETAGEHFTPREVIKLMVNLLVAPDADALSL-PGVVRTVMDPACGTG 180

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G L+ A +H+        +      +GQEL PE+ A+C + ++I+  +        +NI+
Sbjct: 181 GMLSAAEDHILALNPDATVE----VYGQELNPESWAICRSDLMIKGQDP-------ENIR 229

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSM 336
            G++ S D    ++F Y L+NPPFG +W+K K+ VE EHK  G+ GRFG GLP+I+DGS+
Sbjct: 230 FGNSFSDDGHARRKFDYILANPPFGVEWKKVKEEVEYEHKSLGDAGRFGAGLPRINDGSL 289

Query: 337 LFLMHLANKLEL---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           LFL H+ +K++       GG R AIV + SPLF G A SGES IRRW+LEND +EAIVAL
Sbjct: 290 LFLQHMISKMKPVDVSGGGGSRIAIVFNGSPLFTGAAESGESNIRRWILENDWLEAIVAL 349

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIND------ 446
           P  LF+ T I+TY WIL+NRK  + +GKV L++A D W  +R   G KR+ + D      
Sbjct: 350 PDQLFYNTGISTYFWILTNRKDADHKGKVVLLDARDQWQKMRKSLGDKRKELGDGTRGRP 409

Query: 447 DQRRQILDIYVS----RENGKF-----SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           D    I  +Y       ++ +       ++   + FGY+RI V RPL++ F + +  LA 
Sbjct: 410 DHIGDITRLYAEAAQVAKDPEHPLHGKVKVFANQDFGYQRITVERPLKLRFEVTEETLAA 469

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA-KTLKVKASKSF 556
           L       KL       ++  ++ ++   +P    +S    ++K       L   +   F
Sbjct: 470 LAEAKPVAKLE--RNEEFVAAVRTLLGSSWP---TKSDAFIALKDAVVSAGLTWPSGAPF 524

Query: 557 IVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYI 616
           + A     G +DP  + V  V G   PD +L +YENVP  E ++DY  REV PHVP+A+I
Sbjct: 525 VKAVRETIGVRDPEGE-VQKVKGAAEPDGDLRDYENVPLGEDVEDYLKREVLPHVPNAWI 583

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           D            ++GYEI F R FY Y+P R L +IDAELK +EA+I  LL E+  
Sbjct: 584 DHTK--------TKIGYEIPFTRHFYVYKPPRPLAEIDAELKSLEAEIQALLGEVTA 632


>gi|315180943|gb|ADT87857.1| type I restriction-modification system, M subunit/N-6
           Adenine-specific DNA methylase [Vibrio furnissii NCTC
           11218]
          Length = 789

 Score =  684 bits (1766), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/801 (35%), Positives = 393/801 (49%), Gaps = 144/801 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LEP++ ++  +  
Sbjct: 1   MTNNN--FSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEPSKESLLAEIP 58

Query: 61  AFG--------------GSNIDLESFVKV--------AGYSFYNTSEYSLSTLGSTNTRN 98
                              N   +  ++            SF+NTS  +L  +G +N + 
Sbjct: 59  KVEALNEKLVSSGKDPLDENQREKMLLRATFEAKDSTKNLSFFNTSPMNLGKMGQSNIKA 118

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           NLE Y+ SFS +A+ IFE F F   +  LE A LLYK+ K F+  +L P  + +  M  +
Sbjct: 119 NLEKYVQSFSKDAREIFEHFKFDEFVGLLEDANLLYKVVKKFATTDLSPSNISNYEMGLV 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E LIRRF    +E A +  TPRD+V L T+L+   DD       G+IRT+YDPT GTGG
Sbjct: 179 FEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDDEALT-KEGIIRTIYDPTAGTGG 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           FL+  M +V +         ++   GQEL PE++A+C A MLI+  +          I+ 
Sbjct: 238 FLSSGMEYVYELNPKA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKL 286

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSML 337
           G+TLS D     +F Y LSNPPFG  W+K +  ++ EH+  G  GRFG GLP++SDGS+L
Sbjct: 287 GNTLSNDQLPADQFDYMLSNPPFGVDWKKIEGEIKDEHEQKGFDGRFGAGLPRVSDGSLL 346

Query: 338 FLMHLANKLELPPN-----------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           FLMHL +K+                 GGR  I+L+ SPLF G AGSGESEIRR++LE DL
Sbjct: 347 FLMHLISKMRPISPIKDKNVDNQVTDGGRIGIILNGSPLFTGSAGSGESEIRRYILEADL 406

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIN 445
           ++AIVALP D+F+ T IATY+W+LSN+K  ER+GKVQLIN  +L + +R   G KR  + 
Sbjct: 407 LDAIVALPNDMFYNTGIATYVWVLSNKKAPERKGKVQLINGANLGSKMRKSLGSKRHFLT 466

Query: 446 DDQRRQILDIYVSRENGK--------------FSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           DD+ R I   +                      S++ D   FGYRR+ + RPLR+S  + 
Sbjct: 467 DDEIRAITKNFGEFAEVDTATSLKESESGKPFASKIFDTHEFGYRRLTIERPLRLSAQIT 526

Query: 492 KTGLARLEA--------------------------------------------DITWRKL 507
              +  L                                              ++  +++
Sbjct: 527 DAAVESLRFAPKPFNGVMQAVYEQFGTEWDDKTYGTLIEAEAEVRALIKADFPELKEKQI 586

Query: 508 SP-------LHQSFWLDILKPMMQQIYPYG------WAESFVKESIKSNEAKTLKVKASK 554
                    L Q   +D  K +   +            +    E       K   +K   
Sbjct: 587 KEVLDSKLWLSQKALMDDAKALQAAVGDKLGGKTQQSDDFNQFELTLKGAFKATGIKFDV 646

Query: 555 SFIVAFINAFGRKDPRADPVTDV---------------NG---EWIPDTNLTEYENVPYL 596
                F +A   K+  A+PV                   G   E+  D +L + ENVP  
Sbjct: 647 KQKKQFTDAVTWKNQDAEPVIKKVLKEEAQPLYGAFAYKGKVVEFQQDGDLRDNENVPLD 706

Query: 597 ES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKL 650
            S      I+ YF REV PHV DA+I+    D+KD EIG VGYEI FNR FY YQP R L
Sbjct: 707 PSVSTSTLIESYFKREVQPHVADAWINADKRDDKDNEIGVVGYEIPFNRHFYVYQPPRAL 766

Query: 651 QDIDAELKGVEAQIATLLEEM 671
           + IDA+L  V A I  LL+E+
Sbjct: 767 EAIDADLDAVSADIMKLLQEV 787


>gi|229819987|ref|YP_002881513.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
 gi|229565900|gb|ACQ79751.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
          Length = 661

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 253/691 (36%), Positives = 356/691 (51%), Gaps = 55/691 (7%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L++F+W  A+ L G FK   +G V+LPFT+LRRLE  + P R A+         + +
Sbjct: 1   MSQLSSFVWSIADLLRGPFKPHQYGTVVLPFTILRRLEGVMAPHREAMVTAVAKADDATM 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 +  G  FY TS Y+L+T      N   NL  Y+  FS     +F+ FDF + I 
Sbjct: 61  RRALVRRATGLPFYTTSSYTLATALEDPDNLAANLVDYVNGFSAEV-DVFKHFDFEARIH 119

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L+ A  L  + + F+ ++L  D V +  M +++EHLI +     +  A DF TPRD + 
Sbjct: 120 QLDAADRLIPVTQGFARVDLSTDHVSNAGMGDLFEHLIFKDFEASNAEAGDFYTPRDAIR 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   L+   D +    +PG+ R++YDP  GTGG L+ A  H+ +      +        Q
Sbjct: 180 LLVDLVFAEDTSALA-APGITRSVYDPAAGTGGMLSVAEEHLHELNPKANL----ALFAQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ P ++A+  + MLI+           +N++ G TL++DLF G+ F + LSNPP+G  W
Sbjct: 235 EINPASYAIAKSDMLIKGQNI-------ENVRLGDTLAEDLFDGETFDFALSNPPYGVDW 287

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--GGGRAAIVLSSS 363
           +  + AV  EH  G  GRF PGLP + DGSMLFL+HL  K+        GGR  IVL+ S
Sbjct: 288 KAAEKAVRAEHVRGTGGRFAPGLPSVGDGSMLFLLHLVAKMRPVDARGNGGRGGIVLNGS 347

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLFNG AGSG SEIR  LLE+DL++AIVALP D+F+ T IATYLWIL N K  ERR KVQ
Sbjct: 348 PLFNGGAGSGPSEIRGHLLEHDLVDAIVALPNDMFYNTGIATYLWILDNSKQPERRRKVQ 407

Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE--------NGKFSRMLDYRTFG 474
           LI+AT L T +R   G KR  I+   R +I+  Y   +        +G  S++ D   F 
Sbjct: 408 LIDATKLGTKMRKSLGSKRVEISTADRGRIVQAYDRFDGVAADGDASGPRSKVFDTLDFA 467

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           Y  + V RPLR++F +    L  + A     K         ++ L  ++       +   
Sbjct: 468 YWSVTVERPLRLNFQVTPERLENVMASKPLSK---------VEGLVGVLSAFGDELYLNR 518

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP 594
                         +V  +     A   A G +D  AD  TD  G   PDT L + E VP
Sbjct: 519 DEFMGRLGTHLGAHRVGLTTPQRKALWQALGERDETADTCTDSKGRPEPDTGLRDTEIVP 578

Query: 595 YL------------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
           +             ++IQ YF  EV+PHVPDA+ID            RVGYEI F R FY
Sbjct: 579 FGWSDHPKADDAERDTIQAYFDAEVAPHVPDAWIDWTK--------TRVGYEIPFTRHFY 630

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +Y P R L +IDA+L+   ++I  LL E+  
Sbjct: 631 EYVPPRPLAEIDADLEASVSRILDLLREVEA 661


>gi|304315217|ref|YP_003850364.1| type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588676|gb|ADL59051.1| predicted type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
          Length = 671

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 254/692 (36%), Positives = 389/692 (56%), Gaps = 53/692 (7%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   + +FIW  A+ L   +K  ++ KVILPFT+L+R +C LE ++  V  KY  +   
Sbjct: 2   ENHQDIVSFIWDIADLLRDTYKRNEYQKVILPFTVLKRFDCVLEHSKDDVLRKYNEYKDK 61

Query: 66  NIDLESFVKVA-------GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
             +L+  ++ A          FYN S+Y   +L     +   NL  Y+  FS N K IFE
Sbjct: 62  IENLDPILEAAAVDKDGRKLGFYNYSKYDFKSLLEDPDHIEENLMHYLDCFSPNVKDIFE 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +F   + I +L KA LLY + K FS   ++LHPD + +  M  I+E LIRRF  + +E A
Sbjct: 122 NFYIKTHIEKLSKANLLYLLIKKFSESKVDLHPDKISNHDMGIIFEELIRRFSEQSNEEA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               TPRDVV L T LL   +    KE   +I+ +YDP CGTGG LT   N V +     
Sbjct: 182 GQHFTPRDVVKLMTHLLFLENGENLKEK-NLIKKIYDPACGTGGMLTSCKNFVREINDTI 240

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFH 293
            +    V +GQE+  E +A+C A MLI+        + ++NI+   STLS D    ++F 
Sbjct: 241 DV----VLYGQEINEEIYAICKADMLIKG-------ERAENIKGPSSTLSDDQLKDEKFD 289

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + +SNPP+G+KWE+DK+ VEKE + G  GRFG GLP I DG +LF+ H+ +K++      
Sbjct: 290 FMISNPPYGRKWEQDKEVVEKEAELGFDGRFGAGLPGIKDGQLLFIQHMLSKMKDDEK-- 347

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R A++ + SPLF G AGSGES IRRW++END +E I+ LP  LF+ T+I TY+WIL+N+
Sbjct: 348 SRIAVITNGSPLFTGDAGSGESNIRRWIIENDYLETIIGLPDQLFYNTSIRTYIWILTNQ 407

Query: 414 KTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K+ +R GK+QLI+A+  +  +R   GKKR  ++D     IL  Y +       ++ D   
Sbjct: 408 KSPDRIGKIQLIDASSKYVKMRKSLGKKRHQLSDRDIDDILTFYRNFSENDMVKIFDNDD 467

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDI 518
           FGY ++ V RP++++F + +  L  L +   +RKL+                 +   LDI
Sbjct: 468 FGYVKVTVERPMQLNFEVTEERLQNLYSMNAFRKLAESKNKNIEKRMIEEEKGKKLQLDI 527

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
           ++ + +    Y   + F KE  ++ +      + S +FI   I+A    D  AD VTD  
Sbjct: 528 IRALQKINGHYKNWKDFEKEVKRTLK----NFELSNAFIRNIIHALSEHDETADYVTDTR 583

Query: 579 GEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
           G   PD  L + E +P  E I +YF REV P+ PDA++D+        +  ++GYEINFN
Sbjct: 584 GNIKPDPKLRDTERIPLKEDIDEYFKREVLPYYPDAWMDR--------KKDKIGYEINFN 635

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           ++FY+Y+P R L+DI+++++ + ++I  L+++
Sbjct: 636 QYFYKYKPPRSLEDINSDIQKLTSEILELIKD 667


>gi|302037227|ref|YP_003797549.1| putative type I restriction system, N-6 adenine-specific DNA
           methylase HsdM [Candidatus Nitrospira defluvii]
 gi|300605291|emb|CBK41624.1| putative Type I restriction system, N-6 adenine-specific DNA
           methylase HsdM [Candidatus Nitrospira defluvii]
          Length = 714

 Score =  683 bits (1762), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/734 (31%), Positives = 356/734 (48%), Gaps = 85/734 (11%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+   G    +ANFIW  A+D L   +    +  VILP T+LRRL+  LEPT+ AV +  
Sbjct: 1   MSN--GDLNWIANFIWGIADDVLRDLYVRGKYRDVILPMTVLRRLDAVLEPTKQAVLDMK 58

Query: 60  LAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKA 113
           ++   + I    ++  + AG +FYNTS+++L  L         R + E+Y+  FS N + 
Sbjct: 59  VSLDKAKIVHQDQALRQAAGQAFYNTSKFTLKDLKARSSQQQLRADFEAYLDGFSPNVQD 118

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIY 159
           I E F+F + I RL KA  L  +   F   +++                 + +  M  ++
Sbjct: 119 ILEKFEFRNQIPRLSKADALGTLINKFLSPDINLSPNPVKNNDGSMKHPGLDNHAMGTVF 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+RRF  E +E A +  TPRD V L   L+  P     +        LYD  CGTGG 
Sbjct: 179 EELVRRFNEENNEEAGEHWTPRDAVKLMARLIFLPIADQIQSG---TYLLYDGACGTGGM 235

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT A   +    + H+       +GQE+  ET+A+  A +L++        D + NI  G
Sbjct: 236 LTVAEETLQQLAAEHRKKVATHLYGQEINAETYAIAKADLLLKG-----EGDAADNIVGG 290

Query: 280 ---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---GPG------ 327
              STL+ D F  + F + LSNPP+GK W+ D + +  + +  +  RF     G      
Sbjct: 291 PEYSTLANDAFRSREFDFMLSNPPYGKSWKSDLERLGGK-EGIKDPRFMIQHAGEAEYSL 349

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + + SDG MLFL ++ +K++     G R A V + S LF G AG GES IRRW++END +
Sbjct: 350 ITRSSDGQMLFLANMLSKMKHKTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWL 409

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAIVALP ++F+ T IATY+W+L+NRK   R+GKVQLI+AT  +  +R N GKK   ++D
Sbjct: 410 EAIVALPLNMFYNTGIATYIWVLTNRKPAHRQGKVQLIDATQWFKPLRKNLGKKNCELSD 469

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           +  R+I D ++  +  + S++     FGY ++ V RPLR+   LD   L+   A      
Sbjct: 470 EDIRRICDTFIDFKESEQSKIFPNEAFGYWKVTVERPLRLRVDLDPKSLSAFRAACV--- 526

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
                +    ++++ +   + P               +A    VK + +      +   +
Sbjct: 527 --DEDEEPLANVVERVAASLGPGPHLSFNTFMEAVEADANEHGVKLTAARKKLLKDRLAK 584

Query: 567 KDPRADPVTDVN-------------------------GEWIPDTNLTEYENVPYLE--SI 599
           +D +A  +                              E+ PDT L + E +P LE   I
Sbjct: 585 RDEKAAEIIGKTYKPGKVKPDPLRGLFEATVDGKPCVVEYEPDTELRDTEQIPLLEEGGI 644

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
             +  REV PHVPDA+           E  + GYEI+F R+FY+ QP R L+ I A++  
Sbjct: 645 AAFIRREVLPHVPDAWYVP--------ESVKTGYEISFTRYFYKPQPLRSLEAIRADILA 696

Query: 660 VEAQIATLLEEMAT 673
           +E +   LL E+  
Sbjct: 697 LEKETEGLLGEIIG 710


>gi|326387107|ref|ZP_08208717.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208288|gb|EGD59095.1| N-6 DNA methylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 594

 Score =  682 bits (1760), Expect = 0.0,   Method: Composition-based stats.
 Identities = 261/660 (39%), Positives = 367/660 (55%), Gaps = 70/660 (10%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L GD++ +++G+VILPFT+LRRL+C L PT+ AV ++  A           ++ AG
Sbjct: 1   MADLLRGDYRQSEYGRVILPFTVLRRLDCVLAPTKDAVLKEAEA----GRPDPFLIRAAG 56

Query: 78  YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
             F+N S   L+ L     N   NL SYI  FS   + IFE F+F++ I RL K GLLY+
Sbjct: 57  MQFFNRSPLDLAKLIGDQDNIGTNLLSYIQGFSAEVRDIFEQFEFAAQIDRLAKNGLLYQ 116

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + + F+GI+LHP  V +  M   +E LIR+F    +E A +  TPR+V+ L   L+   D
Sbjct: 117 VTERFAGIDLHPARVDNAQMGLAFEELIRKFAEISNETAGEHFTPREVIRLMVNLIFVED 176

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           D +    P ++R++YDPT GTGG L+ A  ++ +          L   GQEL PE++A+C
Sbjct: 177 DEVLT-KPSVVRSIYDPTAGTGGMLSIAEEYLREHNPTA----QLTMWGQELNPESYAIC 231

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            A MLI+  +          I QG+TLS D     RF Y LSNPPFG +W+K +  V+ E
Sbjct: 232 KADMLIKGQDI-------TKIVQGNTLSNDGHPTARFDYMLSNPPFGVEWKKVQKEVQDE 284

Query: 316 H-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           H + G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVL+ SPLF G AGSGE
Sbjct: 285 HLRQGFNGRFGPGLPRVSDGSLLFLMHLLSKMRPWTEGGCRFGIVLNGSPLFTGGAGSGE 344

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           SEIRR++LENDL+EAI+ALPTD+F+ T IATY+WILSN+K + R GKVQLI+A+  W  +
Sbjct: 345 SEIRRYVLENDLVEAIIALPTDMFYNTGIATYVWILSNKKPQARTGKVQLIDASSFWQKM 404

Query: 435 RN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           R   G KR+ + +     +  ++ S    + + +LD       R  V+            
Sbjct: 405 RKSLGSKRKEMGEAHIEDVTRLFGSFVEAQLATVLDASGKEVSRQIVI----------AG 454

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
             A    +    KL+PL + F              +G+    V+  ++    K +  +  
Sbjct: 455 EAAPEAPEGGKVKLAPLSRIFPTQA----------FGYRTITVERPLRDEAGKPVLGQKG 504

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
           K+                       G+  PD+ L + ENVP  E I+ YF REV PH PD
Sbjct: 505 KA----------------------KGKMQPDSALRDTENVPLSEDIETYFEREVKPHAPD 542

Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           A+I        D+   +VGYEI FNR FY ++P R+L +IDAEL GV A+I  +L E+A 
Sbjct: 543 AWI--------DETKTKVGYEIPFNRHFYVFEPPRRLSEIDAELAGVTARIQVMLAELAA 594


>gi|329115022|ref|ZP_08243777.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter
           pomorum DM001]
 gi|326695465|gb|EGE47151.1| Putative type I restriction enzyme MjaXP M protein [Acetobacter
           pomorum DM001]
          Length = 615

 Score =  682 bits (1759), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/681 (37%), Positives = 373/681 (54%), Gaps = 76/681 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    +A+ L++ IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++  
Sbjct: 1   MSTTPRTAS-LSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKE 59

Query: 61  AFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
            +    ID      K AG  F NTS+++L ++     N   NL +YI +FS  A+ IF+ 
Sbjct: 60  KWESKGIDPMSFMEKAAGLRFVNTSDFTLKSVLGDPDNLTQNLSAYINAFSPAARDIFDH 119

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F F+    RL KA LLY + + F   +L    V +  M  ++E LIR+F    +E A + 
Sbjct: 120 FRFTEQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEH 179

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   L+   DD L       +RT+YDPT GTGG L+ A   + D     ++ 
Sbjct: 180 FTPREVIKLMVNLIFAEDDGLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDARL- 238

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQEL PE++A+C A MLIR  +         NI+ G+TLS D     +F Y LS
Sbjct: 239 ---TMFGQELNPESYAICKADMLIRNQDV-------SNIRLGNTLSDDELADYKFDYMLS 288

Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG +W+K +  V  EH K G  GRFGPGLP+ISDGSMLFL+HL +K+    +GG R 
Sbjct: 289 NPPFGVEWKKVEKTVRAEHEKLGYNGRFGPGLPRISDGSMLFLLHLVHKMRPTKDGGSRF 348

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            IVL+ SPLF G AGSGESEIRR++LE+DL+EAI+ALPTD+FF T IATY+W+L+NRK +
Sbjct: 349 GIVLNGSPLFTGAAGSGESEIRRFVLEDDLVEAIIALPTDMFFNTGIATYVWVLTNRKPK 408

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+GKVQLI+A+  W  +R   G KR+ + +D    +  ++   +  + + +        
Sbjct: 409 NRKGKVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITGANGTQT 468

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             +           + +        +    +L+PL + F              +G+    
Sbjct: 469 CAV-----------VTQGETPPEAPEGGKVRLAPLSRIF----------NNKDFGYQTIT 507

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGEWIPDTNLTEYE 591
           V+                            ++D   + V      + G+ +PDT+L + E
Sbjct: 508 VERP--------------------------QRDEDGNIVLGQRGKMKGKKMPDTSLRDTE 541

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           NVP  E I  YF REV PH PDA+ID+           ++GYEI FNR+FY ++P R L+
Sbjct: 542 NVPLNEDIHAYFKREVLPHAPDAWIDEDK--------TKIGYEIPFNRYFYVFEPPRPLE 593

Query: 652 DIDAELKGVEAQIATLLEEMA 672
           +IDA+LK V A+I  +LEE++
Sbjct: 594 EIDADLKEVTAKIMAMLEELS 614


>gi|310639247|ref|YP_003944006.1| type I restriction-modification system methyltransferase subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308752823|gb|ADO43967.1| type I restriction-modification system methyltransferase subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 667

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/692 (33%), Positives = 369/692 (53%), Gaps = 52/692 (7%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + + LAN IW+ A+ L G ++   + +V+LP  +LRR +C L  T+  V  ++    G 
Sbjct: 2   ATHSDLANLIWQIADLLRGPYRPPQYERVMLPLVVLRRFDCVLADTKQKVLAEFERRKGG 61

Query: 66  NIDLESF----VKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119
            ++ ++      K +G+ F+N S  +  T+     +   +L+SYI+ FS N + IFE F+
Sbjct: 62  KLEDDALDRMLNKASGHRFHNRSSMTFETMIGDTSDLVGHLQSYISGFSANVRRIFEYFE 121

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++ I ++ +A +LY + K F  ++LHPD V +  M  ++E+LIRRF    +E A D  T
Sbjct: 122 FTNEIEKMNEANILYLVLKEFLKVDLHPDRVKNDQMGLVFENLIRRFNELANETAGDHFT 181

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+HL   LL    D +    PG +  + DP CGTGG L +A  ++ D     K+   
Sbjct: 182 PREVIHLMVDLLFMDADDVLS-KPGTVMRMLDPACGTGGMLAEAQRYMRDHHKEAKL--- 237

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +GQ+      A   + ML+++++ +      +N+Q G + + D F G+ F Y ++NP
Sbjct: 238 -YVYGQDYNKRAFATAASDMLMKQVDHNGGG---ENVQFGDSFTDDKFEGQTFDYFIANP 293

Query: 300 PFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSMLFLMHLANKLELPPNG----GG 354
           PFG  W+K +  + + H+       +  GLP+++DGS+LFL H+ +K +         G 
Sbjct: 294 PFGVDWKKQQKEIVRRHEKAPQDSPWSAGLPRVNDGSLLFLQHMISKFDDVDPKAQKYGS 353

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAAIV S SPLF G AG GES IR+W++E D++EAIVALP  +F+ T I TY+WI++N K
Sbjct: 354 RAAIVFSGSPLFTGGAGGGESNIRKWIIERDMLEAIVALPEQMFYNTGIGTYIWIVTNNK 413

Query: 415 TEERRGKVQLINATDLWTSI-RNEGKKRRII-------------NDDQRRQILDIYVSRE 460
              R+G +QL++A D++  + R++G KRR I               DQ  +I+ +Y S  
Sbjct: 414 PSHRKGDIQLVDARDIYMPMGRSQGDKRRKIGAGKAPEGDDRPDEPDQIAEIVRLYGSFA 473

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
               S++ D   FGY R+ + RPLR+ + +     AR                  LD ++
Sbjct: 474 PNSKSKIFDNAEFGYTRVTIERPLRLRYRMTVEDKARFLDAAPH----------LLDDIQ 523

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580
            + + +      +            K  + +     +  F N F  KD +A+ V    G 
Sbjct: 524 AIDKALGREMELDWNKVWGSIEKLLKKRESRWRAPEVKLFRNVFTVKDAKAERVKSGKG- 582

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           +  D +L ++EN+P  E +  YF REV PHVPDA++D+           +VGYEINFNR 
Sbjct: 583 FEADPDLRDFENIPLKEDVDAYFAREVLPHVPDAWMDRSKD--------KVGYEINFNRH 634

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           FYQ+   RKL +IDA+LK  E +I  LL E+ 
Sbjct: 635 FYQFTTPRKLVEIDADLKKAEDEILRLLREVT 666


>gi|119491620|ref|ZP_01623492.1| type I restriction-modification system methyltransferase subunit
           [Lyngbya sp. PCC 8106]
 gi|119453349|gb|EAW34513.1| type I restriction-modification system methyltransferase subunit
           [Lyngbya sp. PCC 8106]
          Length = 694

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 258/690 (37%), Positives = 375/690 (54%), Gaps = 56/690 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+ F  +    A+FIWK A+ L G+++  ++  VILP  +LRRL+ A+E TR AVR+++ 
Sbjct: 1   MSNFQAT----ADFIWKIADLLRGNYQRREYPDVILPMVVLRRLDQAMENTRQAVRDEWN 56

Query: 61  AFGGSNIDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFE 116
            + G   +L+  ++ A      YNTSEY    L     N   NL +Y+  FS +   I E
Sbjct: 57  KYHGKLENLDPLLRAAAGDSPVYNTSEYYWRRLLDDRPNLAQNLINYLNGFSPDVLDIIE 116

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYEHLIRRFGSEVS 171
            FDF   ++RL  A LL  +   F+ I+LHP       V +  M  I+EHLI RF  + +
Sbjct: 117 KFDFRRQVSRLNTANLLPILFDEFTKIDLHPPREDGTGVDNLEMGRIFEHLIYRFNQDNN 176

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           E A +  TPR+V+ L   LL   DD      P  I T+YDP CGTGG LT+A  ++ D  
Sbjct: 177 ETAGEHFTPREVIRLMVRLLFPEDDPTL--HPDNILTIYDPACGTGGMLTEAKEYIHDIQ 234

Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
              ++    +   GQE+ P   AV  +  L++  +          I  G++ S+D +  +
Sbjct: 235 TRKYQKIGQVHLFGQEINPTAFAVAKSDFLLKGEDPRR-------ITFGNSFSEDGYPER 287

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           RF Y LSNPPFG  W+K +  +++E++  G  GRFG GLP+I+DGS+LFL H+ +  +  
Sbjct: 288 RFRYMLSNPPFGVDWKKVQYIIKREYETQGFDGRFGAGLPRINDGSLLFLQHILS--KRA 345

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
                R  IV + SPLF G AGSGES IRRW++END +E IVALP  LF+ T I+TYLW+
Sbjct: 346 KEEPSRTVIVFNGSPLFTGDAGSGESNIRRWIIENDWLEGIVALPDQLFYNTGISTYLWV 405

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           L+NRK+ +R+GK+QL+NA + +  +R   G KR  I ++Q  +I +IY +   G    + 
Sbjct: 406 LNNRKSNKRKGKIQLVNAVNFYQKMRKSLGNKRNEITEEQYNEIANIYHAFSTGDNCLIF 465

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF-------------W 515
           D   FGYRRIKV RPLR++F      LARL     +  L+   +               W
Sbjct: 466 DNEDFGYRRIKVERPLRLNFSAAPERLARLPEQSGFAALAESKKKKEEDQKADIEAGKDW 525

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
            + +   ++Q+      +      +     K    K  +S   A + A   +D  A+PV 
Sbjct: 526 QERIINALKQLPVKVTTDPKQFLPLLDKTLKP--FKLKESVKNAILKALTERDENAEPVP 583

Query: 576 DVNGE-WIPDTNLTEYENVPY-------------LESIQDYFVREVSPHVPDAYIDKIFI 621
              GE + PD  L +YENVP               E++ DYF REV P++ DA+ID+ F 
Sbjct: 584 AKKGEGYEPDPELRDYENVPLQWAPSIYDENVPLKENVYDYFAREVKPYISDAWIDEKFK 643

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           DEKD + G +GYEI+FNR+FY+YQP   L+
Sbjct: 644 DEKDGKTGLIGYEISFNRYFYKYQPPEPLE 673


>gi|189425260|ref|YP_001952437.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189421519|gb|ACD95917.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 778

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/789 (29%), Positives = 355/789 (44%), Gaps = 137/789 (17%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +   + +FIW  A+D L   FK   +  VILP  +LRRL+  LEPT+ AV +     
Sbjct: 2   DQATHNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVLRRLDAVLEPTKQAVLDTKQML 61

Query: 63  GGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116
             + I  +  +  + AG +FYNTS ++L  L S   +     + E Y+  FS N + I E
Sbjct: 62  DDAGITEQKAALCEAAGQAFYNTSRFTLRDLRSRANQQQLKLDFEDYLDGFSQNVQDILE 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHL 162
           +F F + I+ L KA  +  + + F   +++                 + +  M  ++E L
Sbjct: 122 NFKFRNQISTLSKADAIGTLIEKFLDPDINVSPNPVLNSDGSVRLPAMDNHSMGTVFEEL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R+F  + +E A +  TPRD V L   L+  P     +        LYD  CGTGG LT 
Sbjct: 182 VRKFNEDNNEEAGEHWTPRDAVKLMARLIFLPIADQVQSG---SYQLYDGACGTGGMLTL 238

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--- 279
           A   + +  +           GQE+ PET+A+C A ML++        + + +I  G   
Sbjct: 239 AEETLLELTAAQDKQVKTYLFGQEINPETYAICKADMLMKG-----EGENADHIVGGAEW 293

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPK 330
           STL+ D F    F + LSNPP+GK W+KD D +  +       RF            + +
Sbjct: 294 STLAHDAFPAHEFDFMLSNPPYGKSWKKDLDTMGGK-DGIRDSRFKITHADDTDYSLITR 352

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            SDG M+FL ++  K+      G R A V + S LF G AG GES IRRW++E D +EAI
Sbjct: 353 SSDGQMMFLANMVAKMNHTSRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIEKDWLEAI 412

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQR 449
           VALP +LF+ T IATY+W+LSNRK + R+GKVQLI+AT  +  +R N GKK   ++DD  
Sbjct: 413 VALPLNLFYNTGIATYIWVLSNRKPDHRKGKVQLIDATAWFKPLRKNLGKKNCELSDDDI 472

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           ++I D Y S    + S++   + FGY ++ V RPLR+   L    +  L       ++  
Sbjct: 473 QRICDTYQSFTESEQSKIFQNKAFGYWKVTVERPLRLHSQLSLPAIESLRFASGDEEIRT 532

Query: 510 LHQSFWLDIL--------KPMMQQIYPYG------------------------------- 530
                + D+L        K + +++  +G                               
Sbjct: 533 QLYEEFGDVLFEQFSSIEKELAKRLAEWGAGDDEGEDDEAPRKGLSEKKKKKLLDAGTWA 592

Query: 531 --------------------WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                               + +            K L  K   + +   + A   +   
Sbjct: 593 RDARLMETAQSLRDLLGGDLYEDHNRFRIDVDTALKKLGRKLPAAELKLILKAVSWRVET 652

Query: 571 ADPV----------------------TDVN---GEWIPDTNLTEYENVPYLES--IQDYF 603
           A PV                       D      E+ PDT+L + E VP LE   I+ + 
Sbjct: 653 APPVIARLHKPGKATPDPLRGLYPVTIDGKACVVEYEPDTDLRDTEQVPLLEDGGIEAFI 712

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            REV P+ PDA++        D+   ++GYEI+F R FY+ QP R L++I A++  VE +
Sbjct: 713 QREVLPYTPDAWL--------DESKTKIGYEISFTRHFYKPQPLRTLEEIRADILAVEQE 764

Query: 664 IATLLEEMA 672
              LL+++ 
Sbjct: 765 AEGLLDDLL 773


>gi|322420421|ref|YP_004199644.1| N-6 DNA methylase [Geobacter sp. M18]
 gi|320126808|gb|ADW14368.1| N-6 DNA methylase [Geobacter sp. M18]
          Length = 710

 Score =  670 bits (1729), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/725 (31%), Positives = 350/725 (48%), Gaps = 80/725 (11%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             S+ NFIW  A+D L   +    +  VILP T++RRL+  LEP++  V        G+ 
Sbjct: 6   HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAG 65

Query: 67  I--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDF 120
           I     +  + AG +FYN S ++L  L +       + + E+Y+  FS N + I + F F
Sbjct: 66  IANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166
            + I  L +A +L  + + F    ++                 + +  M  I+E LIRRF
Sbjct: 126 RNQIPTLIEADILGHLIEKFLDGRVNLSPKPVQDVDGNEILPALDNHSMGTIFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L+  P     +        +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESG---TYLVYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+    H     +   GQE++PET+A+  A +L++          ++N++ GSTLS D 
Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKG-----EGAEAENMKYGSTLSSDA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSML 337
           F  + F + LSNPP+GK W+ D + +  +    +  RF            + + SDG ++
Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTDLERLGGKGDI-KDPRFVTQHGGDPEYKMITRSSDGQLM 356

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++  +K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++
Sbjct: 357 FLVNKLSKMKHTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENM 416

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+NRK++ RRGKVQLI+AT+ +  + RN GKK    +++  R I D+ 
Sbjct: 417 FYNTGIATYIWVLTNRKSDTRRGKVQLIDATEWYVPLRRNLGKKNCEFSEEHIRAICDLV 476

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           V+      S++     FGY ++ V RPLR++  L    L R E      K  PL      
Sbjct: 477 VNPVETDKSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERACAKAKEEPL-----A 531

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
           ++   + + +      +     +    +A    VK +        +        A PV  
Sbjct: 532 NLASRVAEALGVGPHLDFNAFMNAVEADADKHGVKLTAKRKKLLQSDLCDTREDAAPVLK 591

Query: 577 V--------------------NG-----EWIPDTNLTEYENVPYLE--SIQDYFVREVSP 609
                                NG     E+ PDT L + E VP LE   I+ +  REV P
Sbjct: 592 KVHKPGKATPDPIHGLVEAEVNGKTCVVEYEPDTALRDTEQVPLLEEGGIEAFIRREVLP 651

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           + PDA+ID             VGYEI+F R FY+  P R L +I A++  +E +   LLE
Sbjct: 652 YTPDAWIDPDK--------TLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLE 703

Query: 670 EMATE 674
           ++  E
Sbjct: 704 QIVGE 708


>gi|78356904|ref|YP_388353.1| type I restriction-modification system specificity subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78219309|gb|ABB38658.1| type I restriction-modification system specificity subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 710

 Score =  669 bits (1727), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/725 (31%), Positives = 354/725 (48%), Gaps = 80/725 (11%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             S+ NFIW  A+D L   +    +  VILP T++RRL+  LEP++  V        G+ 
Sbjct: 6   HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPSKEKVLGMKKQLDGAG 65

Query: 67  I--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDF 120
           I     +  + AG +FYN S ++L  L +       + + E+Y+  FS N + I + F F
Sbjct: 66  IANQHAALCQAAGEAFYNVSPFTLRDLKNRAKQQQLKADFEAYLDGFSPNVQEILDKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166
            + I  L +A +L  + + F    ++                 + +  M  I+E LIRRF
Sbjct: 126 RNQIPTLIEADILGHLIEKFLDGRVNLSPKPVRDVDGNELLPALDNHSMGTIFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L+  P     +        +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADLIFLPVADDIESG---TYLVYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+    H     +   GQE++PET+A+  A +L++          ++N++ GSTLS D 
Sbjct: 243 LAELAESHGKDVSIHLFGQEVQPETYAISKADLLLKG-----EGAEAENMKYGSTLSSDA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSML 337
           F  + F + LSNPP+GK W+ D + +  +    +  RF            + + SDG ++
Sbjct: 298 FPSQEFDFMLSNPPYGKSWKTDLERLGGKGDI-KDPRFVTQHANDSEYKMITRSSDGQLM 356

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++  +K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++
Sbjct: 357 FLVNKLSKMKHSTKLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENM 416

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+NRK++ R+GKVQLI+A++ +  + RN GKK   ++++Q + I+D+ 
Sbjct: 417 FYNTGIATYIWVLTNRKSDTRKGKVQLIDASEWYVPLRRNLGKKNCELSEEQIQTIVDLV 476

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           V+    + S++     FGY ++ V RPLR++  L    L R +      K  PL +    
Sbjct: 477 VNPRETEKSKIFPNEAFGYWKVIVERPLRLAVDLSPARLERFDRACAQAKEEPLAK---- 532

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            + + + + +      +      +   +A    VK +                 A PV  
Sbjct: 533 -LARRVAEALGAGPHIDFNAFMDVAHADADKHGVKLTAKRKKLLQGELCDTREDAAPVLK 591

Query: 577 V------------NG-------------EWIPDTNLTEYENVPYLES--IQDYFVREVSP 609
                        +G             E+ PDT L + E VP LE   I+ +F REV P
Sbjct: 592 KVHKPGKATPDPIHGLFEAELGGKPCVVEYEPDTALRDSEQVPLLEDGGIEAFFRREVLP 651

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           +  DA+ID             VGYEI+F R FY+  P R L +I A++  +E +   LLE
Sbjct: 652 YTSDAWIDPGK--------TLVGYEISFTRHFYRPAPMRTLDEIKADIYALEQETEGLLE 703

Query: 670 EMATE 674
           ++  E
Sbjct: 704 QIVGE 708


>gi|296116345|ref|ZP_06834961.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977164|gb|EFG83926.1| type I restriction-modification methylase M subunit, N-6 DNA
           Methylase [Gluconacetobacter hansenii ATCC 23769]
          Length = 603

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 255/665 (38%), Positives = 365/665 (54%), Gaps = 67/665 (10%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL-ESF 72
            IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++   +    ID     
Sbjct: 1   MIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKEKWERKGIDPMPFM 60

Query: 73  VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA 130
            K AG  F NTS+++L  +     N   NL +YI +FS  A+ IF+ F F+    RL KA
Sbjct: 61  EKAAGLRFVNTSDFTLKGVLDDPDNLAENLSAYINAFSPAARDIFDHFRFTEQTDRLAKA 120

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            LLY + + F   +L    V +  M  ++E LIR+F    +E A +  TPR+V+ L   L
Sbjct: 121 NLLYLVLEKFISFDLSDKAVDNHRMGQVFEELIRKFSEASNETAGEHFTPREVIKLMVNL 180

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +   DD+L       +RT+YDPT GTGG L+ A   + D     ++       GQEL PE
Sbjct: 181 IFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDARL----TMFGQELNPE 236

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           ++A+C A MLIR  +         NI+ G+TLS D     +F Y LSNPPFG +W+K + 
Sbjct: 237 SYAICKADMLIRNQDV-------SNIRLGNTLSDDELADHKFDYMLSNPPFGVEWKKVEK 289

Query: 311 AVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           AV  EH+  G  GRFGPGLP+ISDGSMLFL+HL +K+ L  +GG R  IVL+ SPLF G 
Sbjct: 290 AVRAEHEKQGYDGRFGPGLPRISDGSMLFLLHLVHKMRLTKDGGARFGIVLNGSPLFTGA 349

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK + R+GKVQLI+A+ 
Sbjct: 350 AGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPQNRKGKVQLIDASS 409

Query: 430 LWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            W  +R   G KR+ + +D    +  ++   +  + + +        R + +        
Sbjct: 410 FWRKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATITATDGTQTRAVVMQ------G 463

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
                       +    +L+PL + F              +G+    V+   +  + K +
Sbjct: 464 EAPPEA-----PEGGKVRLAPLSRIF----------NNEDFGYQTITVERPQRDGDGKIV 508

Query: 549 KVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVS 608
             +  K+                       G+ +PD++L + ENVP  E I  YF REV 
Sbjct: 509 LGQRGKA----------------------KGKPMPDSSLRDTENVPLNEDIHAYFKREVL 546

Query: 609 PHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLL 668
           PH PDA+ID+  I        ++GYEI FNR+FY ++P R L +IDA+LK V  +I  +L
Sbjct: 547 PHAPDAWIDEDKI--------KIGYEIPFNRYFYVFEPPRPLAEIDADLKEVTTKIMAML 598

Query: 669 EEMAT 673
            E++ 
Sbjct: 599 GELSA 603


>gi|229163474|ref|ZP_04291425.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus R309803]
 gi|228620043|gb|EEK76918.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus R309803]
          Length = 679

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 238/707 (33%), Positives = 362/707 (51%), Gaps = 64/707 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +     NFIWKNAE L G +K  ++ +V+LP  +LRR +C L+PT+  V EK  
Sbjct: 1   MEQIQNN--EFVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQEVLEKTK 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
                 I      K+ GY F N S++   TL     N   NL +YI  FS N + IFE F
Sbjct: 59  VVKHDAI----LNKITGYDFNNISQFDFQTLLKDPDNIAANLRNYIQGFSVNIRMIFERF 114

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F + I ++++  LLY + + FSGI+L    V +  M  I+E  IRRF    +  A D  
Sbjct: 115 GFDTQIQKMDEHNLLYSVIQLFSGIDLSIQRVSNIQMGYIFEEFIRRFSE--NAEAGDHY 172

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   L+L+ D +      G I  + D  CGTGG L++A  ++ +   + ++  
Sbjct: 173 TPREVIQLMVNLVLNEDQSEL-MQEGKIVQIGDFACGTGGMLSEATRYIQELNPNAQVE- 230

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297
                GQE+ P+++A+  A +LI+          + +I  G++L+  D     +  Y L 
Sbjct: 231 ---VFGQEINPKSYAIACADLLIKGQN-------AGHIAFGNSLTDADGHKDLQVRYALM 280

Query: 298 NPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG  W+   +++++EH+  G+ GR+G GLP+ SDGS+LFL H+ +K++     G R 
Sbjct: 281 NPPFGVDWKHYGESIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRDEK-GSRM 339

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + SPLF G AGSGESEIRR ++E DL+E IVALP  LF+ T I+TY+WILSNRK +
Sbjct: 340 AIIFNGSPLFTGDAGSGESEIRRRIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKND 399

Query: 417 E------RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +      R+GK+QL++AT     +R   G KR  I + Q  +I  IY   +  K+ ++ D
Sbjct: 400 DLIKGAVRKGKIQLVDATSFAEKMRKSLGNKRNEITEPQIAEITRIYGEFKENKYCKIFD 459

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL---------------SPLHQSF 514
              FGYR+I V +PL+++F++    +  L  +  + KL                P     
Sbjct: 460 LEDFGYRKITVEQPLQLNFMISPERIENLYNEAAYAKLYDEEAYTELSRKKDKKPADMKK 519

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV---------KASKSFIVAFINAFG 565
                +    Q       +  + +++  N    LKV         +       A      
Sbjct: 520 LEKWEEGKQLQEKILAILDENISDTLYKNREDFLKVLKPLFNNVPEVKAGLWKAIYMGLS 579

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
            +D  AD      G+   D  L + EN+P  E IQ+YF REV PHVPDA+I        D
Sbjct: 580 ERDETADVCESAKGKVEADPMLRDTENIPLKEDIQEYFEREVLPHVPDAWI--------D 631

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +   ++GYEI F R+FY+Y+       +      +E  I  LL+++ 
Sbjct: 632 ESKTKIGYEIPFTRYFYKYEQLESSVILKQRAIELEESIQELLKKVL 678


>gi|294789184|ref|ZP_06754423.1| type I site-specific deoxyribonuclease (modification subunit)
           [Simonsiella muelleri ATCC 29453]
 gi|294482925|gb|EFG30613.1| type I site-specific deoxyribonuclease (modification subunit)
           [Simonsiella muelleri ATCC 29453]
          Length = 726

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 235/745 (31%), Positives = 371/745 (49%), Gaps = 94/745 (12%)

Query: 1   MTEFTGS----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-- 54
           MT+         ++L + +W  A  L G ++   + KV+LP  +L R +  L        
Sbjct: 1   MTQIQTQQHPHHSTLVSILWNIANGLRGTYRPPQYRKVMLPLIVLARFDAILANHTDQMK 60

Query: 55  -VREKYLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFS 108
            V ++        +D    E   +    + YN S ++L+ L     + R N   YI  FS
Sbjct: 61  TVFDENKNLPAVILDKKLTEIIGQNRKQTLYNVSGFNLARLLEDPDHIRANCSKYINGFS 120

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNIYEHL 162
             AK IF+ F+F + + +L++A  L+KI ++F       G+ L PD + +  M  ++E L
Sbjct: 121 AKAKDIFDKFEFETELDKLDEANRLFKILQDFIGDLNKHGLTLSPDVISNIQMGYLFEDL 180

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F  + +E A D  TPR+V+ L   +    D    +++ G+ RT+YDPTCGTGG L++
Sbjct: 181 IRKFNEQANEEAGDHFTPREVIRLMVNIAFAEDHEELQKA-GVHRTIYDPTCGTGGMLSE 239

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           +   +            L  +GQE   E++A+C A +LI+        + +++I  G TL
Sbjct: 240 SEKELKGFNQAI----SLGLYGQEYNAESYAICCADLLIK-------DEPAEHIIFGDTL 288

Query: 283 -------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGL 328
                          D   GKRF Y  +NPPFG +W+  +D V+KEH++ G  GRFG GL
Sbjct: 289 GVQNAKDKGNGFTPNDGHQGKRFDYMFANPPFGVEWKIQEDFVKKEHQDQGFNGRFGAGL 348

Query: 329 PKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+I+DGS+LFL H+ +K++ P     G R A+V + SPLF G AGSGES IRR+++ENDL
Sbjct: 349 PRINDGSLLFLQHMISKMKQPKTDEQGSRIAVVFNGSPLFTGDAGSGESNIRRYVIENDL 408

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIN 445
           +EA++ALP  +F+ T I TY+WILSN+K+E+R+GK+QLINAT  +  + ++ G KR  ++
Sbjct: 409 LEAVIALPDQMFYNTGIYTYIWILSNKKSEKRQGKIQLINATGYFQKMQKSLGNKRNELS 468

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +     I  +Y      K S++ + + F Y +I V RPLR++F      + +L A   + 
Sbjct: 469 EQHITDITQLYTDFIETKDSKIFNNQDFAYLKITVERPLRLNFQASPERIEKLWAQTAFV 528

Query: 506 KLSPLHQSFWLDILKPMMQQ--------------IYPYGWAESFVKESIKSNEAKTLKVK 551
            L+   +      +K   +               +    +        + +   K L  K
Sbjct: 529 NLAKSKKIKDETQIKAEEETGKAQQQAIINTLNGLDNTLYTSRAQFLKVLNPALKGLSFK 588

Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP----------------- 594
            S S   A + A   +D  AD  TD  G   PD  L + E VP                 
Sbjct: 589 VSGSLQKAILEALSERDQTADICTDSKGNPEPDPQLRDSELVPMPSEMAFPLSLGYDNET 648

Query: 595 --------YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
                      ++Q Y   EV PHV DA++        D+   ++G+EI  NR FY+YQP
Sbjct: 649 NLSDLLTALRPTVQAYMTAEVLPHVQDAWV--------DESKTKLGFEIPINRHFYEYQP 700

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            R L +I +E+  +E +I  +L ++
Sbjct: 701 PRDLAEIKSEIVALEQEIMAMLGKL 725


>gi|149927744|ref|ZP_01915996.1| type I restriction-modification system methyltransferase subunit
           [Limnobacter sp. MED105]
 gi|149823570|gb|EDM82800.1| type I restriction-modification system methyltransferase subunit
           [Limnobacter sp. MED105]
          Length = 682

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 270/689 (39%), Positives = 384/689 (55%), Gaps = 38/689 (5%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + LA+ IWKNAE L G ++  ++ KVILPFT+LRRL+C L P R  V  +Y A   S  
Sbjct: 1   MSKLADLIWKNAELLRGAYRENEYRKVILPFTILRRLDCVLAPKREEVYTQYEALRNSKY 60

Query: 68  DLESFVK-VAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           D+E  +  ++ Y F+NTS +SL  L     + R+NLE+ +  FS N + IFE F F STI
Sbjct: 61  DMEKILTTISDYPFFNTSRFSLEALAQTPDDVRDNLEAMVNGFSQNVRDIFEKFGFISTI 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +LE+ G LY + + F+  +L+PD V +  M   +E L+R+F       A +  TPRDV+
Sbjct: 121 NKLEEKGRLYLVVQRFAETDLNPDVVSNHDMGMAFEELLRKFNDVS--PAGEQYTPRDVI 178

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L  +LL   D  L    PG+++T+YDPT GTGG L+    +V           +L   G
Sbjct: 179 ELMVSLLFSTDQDLLSI-PGIVKTMYDPTAGTGGLLSVGEEYVKRMNDRA----VLSLFG 233

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QELE ET+A+C A MLIR            NI    TL  DL  G+ F Y  +NPP+G +
Sbjct: 234 QELEDETYAICKADMLIRGQNP-------ANIVNEDTLKIDLLAGEVFDYQAANPPYGVE 286

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSS 362
           W+  +DAV +EHK G  GRF PGLP I DG MLF +HL +K+       GGGR  +V + 
Sbjct: 287 WKPAEDAVRREHKLGAAGRFAPGLPAIRDGQMLFSLHLLSKMRPFIDGKGGGRIGVVHNG 346

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR+++ ND +EAIVA+PTDLF+ TNI TYLW ++NRK E+R+GKV
Sbjct: 347 SPLFAGDAGSGESEIRRYIMANDYLEAIVAMPTDLFYNTNIQTYLWFMTNRKPEKRQGKV 406

Query: 423 QLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGK----------FSRMLDYR 471
            L++A+ +   ++ N GKKRR   +D   QI   Y   ++             +++ D  
Sbjct: 407 MLLDASKMGVLMKKNLGKKRREFTEDCIAQINKAYEDFKDMTWKDPAGERVLNAKVFDNA 466

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F YR++ + RPLRM F L       +  + ++ KL PL Q   +  L  +      +  
Sbjct: 467 HFHYRKVTIERPLRMRFQLTDFARDAVLGNPSFAKL-PLEQRHLVGCLLDVFDSTAVFTN 525

Query: 532 AESF-------VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
           A+ F         +   + +      + +   I       G KDP+AD  TD  G  I D
Sbjct: 526 ADDFRSALNAAADQVATTQQLTGKASRLTAKSIELLRKTIGVKDPKADITTDEKGSVISD 585

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E VP  + +  YF  EV PH PDA+I+K  +D +D  +G VG EINFNR FY Y
Sbjct: 586 SDLRDAEYVPMNKDVDAYFESEVKPHWPDAWINKEVVDSQDGVVGVVGTEINFNREFYVY 645

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +P R  ++I A+++  E +   +L+ +  
Sbjct: 646 KPPRSREEIAADIEAKEKKFMEMLKAIKG 674


>gi|120612013|ref|YP_971691.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1]
 gi|120590477|gb|ABM33917.1| N-6 DNA methylase [Acidovorax citrulli AAC00-1]
          Length = 709

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 256/726 (35%), Positives = 380/726 (52%), Gaps = 75/726 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +   LANFIW  A+ L G ++   + +V+LP T+LRR +  L P++ AV ++Y    
Sbjct: 1   MSVNFQQLANFIWSVADLLRGPYRPPQYERVMLPLTVLRRFDAVLAPSKEAVLKRYEPLR 60

Query: 64  GSNID-----LESFVKVAG---YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             NI      L +  K  G     F+N S+     L     N   +L  YIA FS+N + 
Sbjct: 61  AKNIPNIDAILNNLAKDEGGTPLGFHNHSQLDFQKLKGDPDNIGRHLADYIAGFSENVRK 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IFE F+F   I +LE++  LY++   F+ I+LHP  V +  M  ++E LIRRF    +E 
Sbjct: 121 IFERFEFDKEIEKLEESNRLYQVVSQFAEIDLHPKRVDNITMGLVFEDLIRRFNEAANET 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A D  TPR+V+ L   LLL+PD ++  ++ G+I T+ DP CGTGG L +A N +      
Sbjct: 181 AGDHFTPREVIQLMVNLLLEPDTSVLTQA-GVIVTICDPACGTGGMLAEAQNWIRAHNEQ 239

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
             +       GQ+  P ++AV  + +LI+             +  G+TL+ D F  +RF 
Sbjct: 240 ATVK----VFGQDYNPRSYAVAASDLLIKG-------HKDGQVVLGNTLTDDPFPEQRFD 288

Query: 294 YCLSNPPFGKKWEKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y L+NPPFG  W+ +K  +++  +  G  G+    LP+I+DG++LFL+++ +K +    G
Sbjct: 289 YLLANPPFGVDWKAEKKVIDRWPNFRGYSGK----LPRINDGALLFLLYMMSKFQEYKPG 344

Query: 353 -----GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G R A+V + SPLF G AGSGES+IRRW++E D +EAIVALP  +F+ T I T++
Sbjct: 345 SRDKPGSRTAVVFNGSPLFTGGAGSGESDIRRWIIERDQLEAIVALPEQMFYNTGIGTFI 404

Query: 408 WILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           W+++NRK   R+ K+QLI+A + +T + R+ G KRR ++      +   + + E+ K SR
Sbjct: 405 WVVTNRKASHRKSKIQLIDARERYTPMKRSLGDKRRYLDQAALDDVTREHGALEDSKTSR 464

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           + D   FGYRRI VLRPLR+ F +      R        +L    Q+   D+    +   
Sbjct: 465 VFDNADFGYRRITVLRPLRLRFQITDETRERFLNVCP--ELFDALQAVQEDLGTEPLLDW 522

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV--------- 577
                A   V +++  N     K     +    F + F   DP A PV D          
Sbjct: 523 NQAWGAVQQVFKALPDNIDGWAKGAKGTAQKKIFRDCFTVVDPEAAPVVDKHHKIEPLDC 582

Query: 578 ----------------------------NG---EWIPDTNLTEYENVPYLESIQDYFVRE 606
                                        G   E++PD  L + EN+P  E I  Y +RE
Sbjct: 583 AALFPGQTLPADLCKDDLYELLGLHADGKGKHIEYVPDPALKDAENIPLKEDIVSYVLRE 642

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V  +VPDA+ID+  +DE+D  IG+VGYEINFNR F+QYQP R L +IDAEL  VE +I  
Sbjct: 643 VRTYVPDAWIDRATLDEQDGGIGKVGYEINFNRVFFQYQPPRPLHEIDAELAEVEKRILD 702

Query: 667 LLEEMA 672
           LL E+ 
Sbjct: 703 LLREVT 708


>gi|300112914|ref|YP_003759489.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299538851|gb|ADJ27168.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 722

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/736 (31%), Positives = 353/736 (47%), Gaps = 91/736 (12%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             S+ NFIW  A+D L   +    +  VILP T++RRL+  LEPT+  V         + 
Sbjct: 6   HNSIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDALLEPTKEKVLVMKAQLDEAG 65

Query: 67  I--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDF 120
           I     +  + AG +FYN S ++L  L S       R + E+Y+  FS N + I + F F
Sbjct: 66  IANQHAALCQAAGEAFYNVSPFTLRDLKSRAKLQQLRADFEAYLDGFSPNVQEILDKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166
            + I  L +A +L  +   F    ++                 + +  M  I+E LIRRF
Sbjct: 126 RNQIPTLIEADILGHLIDKFLDTRINLSPRPVQDMDGNERLPALDNHAMGTIFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   L+  P     +        +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVRLMADLIFLPIADEIESG---TYLVYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-D 285
           +A+  + H     +   GQE++PET+A+  A +L++          ++NI+ GSTLS  D
Sbjct: 243 LAELAASHGKEVSIHLFGQEVQPETYAIAKADLLLKG-----EGGGAENIKYGSTLSSSD 297

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSM 336
            F  + F + LSNPP+GK W+ D D +  +  + +  RF            + + SDG +
Sbjct: 298 PFLSQEFDFMLSNPPYGKSWKSDVDRLGGK-DDIKDLRFVTHHGGDPAYKMITRSSDGQL 356

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +FL++   K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP +
Sbjct: 357 MFLVNNLAKMKPTTRLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPEN 416

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDI 455
           +F+ T IATY+W+L+NRK E+RRGKVQLI+A++ +  + RN GKK R + ++  R I D+
Sbjct: 417 MFYNTGIATYIWVLTNRKREKRRGKVQLIDASEWFVPLRRNLGKKNRELTEEHIRAICDL 476

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            V+    + S++     FGY ++ V RPLR++  L    L R E      K  PL     
Sbjct: 477 VVTPVETEQSKIFPNEAFGYWKVTVDRPLRLAVDLSPARLERFERTCAKSKEEPL----- 531

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
            ++ + +   +      +          +AK   +K +        +        A PV 
Sbjct: 532 ANLARRVAGVLGAGPHLDFNAFMDACGADAKAHGIKLTAKRKKLLQSELCDTREDAAPVL 591

Query: 576 DV------------NG-----------------------EWIPDTNLTEYENVPYLE--S 598
                         +G                       E+ PDT L + E VP LE   
Sbjct: 592 KKVHRPDKATPDPIHGLFKIELPSPRGRGAGGEGKIHVVEFEPDTALRDSEQVPLLEEGG 651

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I+ +F REV P+ PDA+ID   I        ++GYEI+F   FY+  P R L+ I A++ 
Sbjct: 652 IEAFFRREVLPYTPDAWIDPAKI--------QIGYEISFTHHFYKPAPMRTLEAIKADIY 703

Query: 659 GVEAQIATLLEEMATE 674
            +E +   LLE++  E
Sbjct: 704 ALEQETEGLLEQIVGE 719


>gi|209523388|ref|ZP_03271943.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209496130|gb|EDZ96430.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 679

 Score =  665 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 248/704 (35%), Positives = 371/704 (52%), Gaps = 65/704 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY  +
Sbjct: 6   NTTVDHHQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCVLAPTKQNVLDKYQQY 65

Query: 63  GGSNID---LESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFED 117
                D          AG  F+N SE++   L     N   +L SYI SFS N + IFE 
Sbjct: 66  KDRLQDKALDSMLDTAAGQRFHNRSEFTFEKLKGDPNNLDQHLVSYINSFSQNIREIFER 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A D 
Sbjct: 126 FEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAGDH 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   +L DPDD +  +   +IR L DP CGTGG L++A N++          
Sbjct: 186 FTPREVIGLMVDILFDPDDDILTQ--PVIRKLLDPACGTGGMLSEAQNYLRKNNKDA--- 240

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             L   GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y L+
Sbjct: 241 -QLYVFGQDFNPRAYAIAASDLLIKDNEQSA-------IQFGDSLTDDQYSGETFDYFLA 292

Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPP----NG 352
           NPPF   W+K +  V++EH K G  GRFG GLP+++DGS+LFL H  +K E         
Sbjct: 293 NPPFRVYWKKQQKEVKREHEKLGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSDKK 352

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R AIV + SPLF G AGSGESEIR+W++E+D +EAIVALP  +F+ T I TYLWI++N
Sbjct: 353 GSRLAIVFNGSPLFTGGAGSGESEIRKWIIESDWLEAIVALPEQMFYNTGIGTYLWIVTN 412

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           RK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y      + S++    
Sbjct: 413 RKQKHRKGKIQLIDARQRWQPMRRSLGDKRRYMGEEDIAIVVQEYGHFIETETSKIFANE 472

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            FGY R+ + RPLR+ + +D     R    +             LD +K + +Q+     
Sbjct: 473 DFGYHRVPIERPLRLLYQMDVDRKLRFLDAVPH----------LLDDVKAIDKQLGREPR 522

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGE------- 580
            +    + +  +  K    +  K+    F + F  ++P A+PV         E       
Sbjct: 523 PDWNEFDRLMKDLLKQRGSRWKKAEKKLFRDVFTEREPEAEPVILKEQKAKDEPYARVWG 582

Query: 581 ------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
                       + PD+ L ++ENV   + +  YF+ EV PHV DA+         D   
Sbjct: 583 WFPVAGKKIERMYEPDSTLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADGTK 634

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            +  YEINFNR+FY+Y P R L +IDA++K +E +I  LL E+ 
Sbjct: 635 IKSAYEINFNRYFYKYTPPRPLAEIDADIKQMEQEIIKLLREVT 678


>gi|78773871|gb|ABB51221.1| type I RM system M subunit [Arthrospira platensis]
          Length = 688

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 67/707 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY   
Sbjct: 13  NTTVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQC 72

Query: 63  GGSNIDLE---SFVKVAG--YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115
                D        K AG  + F+N SE++   L     N   +L +YI SFS N + IF
Sbjct: 73  KDRFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIF 132

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A 
Sbjct: 133 ERFEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAG 192

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           D  TPR+V+ L   +L DPDD +      +I  L DP CGTGG L+++ N++ +     +
Sbjct: 193 DHFTPREVIRLMVDILFDPDDDILT--KPVICRLLDPACGTGGMLSESQNYLRENNKEAQ 250

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y 
Sbjct: 251 LW----VFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYF 299

Query: 296 LSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---- 350
           L+NPPFG  W+K +  V++EH+  G  GRFG GLP+++DGS+LFL H  +K E       
Sbjct: 300 LANPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSD 359

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP  +F+ T I TY+WI+
Sbjct: 360 KKGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIV 419

Query: 411 SNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +NRK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y +    + S++  
Sbjct: 420 TNRKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFK 479

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              FGY R+ + RPLR+ + +D     R    +             L+ ++ + +Q+   
Sbjct: 480 NEDFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPH----------LLEDVQAIDKQLGRE 529

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGE----- 580
              +    + + ++  K    +  K+    F + F  ++P A+PV         E     
Sbjct: 530 PRPDWNEFDRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDEPYARV 589

Query: 581 --------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
                         + PD+ L ++ENV   + +  YF+ EV PHV DA+         D 
Sbjct: 590 WGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADG 641

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              R  +EINFNR+FY+Y P R L +ID+++K +E +I  LL E+  
Sbjct: 642 AKIRSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 688


>gi|284052080|ref|ZP_06382290.1| type I restriction-modification system methyltransferase subunit
           [Arthrospira platensis str. Paraca]
 gi|291566233|dbj|BAI88505.1| type I restriction-modification system M subunit [Arthrospira
           platensis NIES-39]
          Length = 681

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 242/707 (34%), Positives = 375/707 (53%), Gaps = 67/707 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             T     L+NFIW+ A+ L G ++   + +V+LP T+LRR +C L PT+  V +KY   
Sbjct: 6   NTTVDHQQLSNFIWQIADLLRGPYRPPQYERVMLPMTVLRRFDCILAPTKQDVLDKYQQC 65

Query: 63  GGSNIDLE---SFVKVAG--YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115
                D        K AG  + F+N SE++   L     N   +L +YI SFS N + IF
Sbjct: 66  KDRFKDEALDSMLNKAAGPDFRFHNRSEFTFEKLKGDPNNIDKHLVTYINSFSKNIREIF 125

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E F+F++ I ++ +A +LY +   F  + LHP+ V +  M +I+E LIRRF    +E A 
Sbjct: 126 ERFEFTAEIEKMNEANILYLVVSKFCDVNLHPNQVDNIAMGSIFEDLIRRFNELANETAG 185

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           D  TPR+V+ L   +L DPDD +      +I  L DP CGTGG L+++ N++ +     +
Sbjct: 186 DHFTPREVIRLMVDILFDPDDDILT--KPVICRLLDPACGTGGMLSESQNYLRENNKEAQ 243

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQ+  P  +A+  + +LI+  E          IQ G +L+ D ++G+ F Y 
Sbjct: 244 LW----VFGQDFNPRAYAIAASDLLIKGNEQSA-------IQFGDSLTDDQYSGETFDYF 292

Query: 296 LSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPP---- 350
           L+NPPFG  W+K +  V++EH+  G  GRFG GLP+++DGS+LFL H  +K E       
Sbjct: 293 LANPPFGVDWKKQQKDVKREHEKFGFAGRFGAGLPRVNDGSLLFLQHQISKFEPYQPDSD 352

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R AIV + SPLF G AGSGESEIR+W++END +EAIVALP  +F+ T I TY+WI+
Sbjct: 353 KKGSRLAIVFNGSPLFTGGAGSGESEIRKWIIENDWLEAIVALPEQMFYNTGIGTYIWIV 412

Query: 411 SNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +NRK + R+GK+QLI+A   W  +R   G KRR + ++    ++  Y +    + S++  
Sbjct: 413 TNRKQKHRQGKIQLIDARHRWQPMRRSLGDKRRYMGEEDIAIVVQEYGNFVETETSKIFK 472

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              FGY R+ + RPLR+ + +D     R    +             L+ ++ + +Q+   
Sbjct: 473 NEDFGYNRVPIERPLRLLYQMDTDRKLRFLDGVPH----------LLEDVQAIDKQLGRE 522

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGE----- 580
              +    + + ++  K    +  K+    F + F  ++P A+PV         E     
Sbjct: 523 PRPDWNEFDRLMNDLLKQRSSRWKKAEQKLFRDVFTEREPEAEPVILKQRKAKDEPYARV 582

Query: 581 --------------WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
                         + PD+ L ++ENV   + +  YF+ EV PHV DA+         D 
Sbjct: 583 WGWFPVAGKKIELMYEPDSKLRDFENVNLQDEVTRYFLEEVEPHVSDAW--------ADG 634

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
              R  +EINFNR+FY+Y P R L +ID+++K +E +I  LL E+  
Sbjct: 635 AKIRSAFEINFNRYFYKYTPPRPLAEIDSDIKQMEEEIIKLLREVTA 681


>gi|289166195|ref|YP_003456333.1| type I restriction-modification system (N6 DNA methylase)
           [Legionella longbeachae NSW150]
 gi|288859368|emb|CBJ13304.1| putative type I restriction-modification system (N6 DNA methylase)
           [Legionella longbeachae NSW150]
          Length = 711

 Score =  662 bits (1709), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/725 (31%), Positives = 359/725 (49%), Gaps = 80/725 (11%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             ++ NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ +V         + 
Sbjct: 6   HNTITNFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDALLEPTKESVLSMKKQLDNAG 65

Query: 67  I--DLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIFEDFDF 120
           I     +  + +  +FYN S ++L  L +       + + ESY+  FS N + I E F F
Sbjct: 66  IANQDAALCQASDEAFYNCSPFTLRDLKNRTKMQQLKADFESYLDGFSPNVQEILEKFKF 125

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRF 166
            + I+ L +A +L  + + F    ++                 + +  M  ++E LIRRF
Sbjct: 126 RNQISTLVEADILGALIEKFLNPNINLSPKPIYDTEGNERLPGLDNHAMGTVFEELIRRF 185

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPRDVV L   ++  P     +        +YD  CGTGG LT A   
Sbjct: 186 NEENNEEAGEHFTPRDVVKLMADVIFLPIAHEIESG---TYLVYDGACGTGGMLTVAEER 242

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +  +       +  +GQE++PET+A+  A +L++          ++NI+ GSTLS D 
Sbjct: 243 LQELATEAGKEVSIHLYGQEIQPETYAIAKADLLLKG-----EGAEAENIKYGSTLSADA 297

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGLPKISDGSML 337
           F   +F + LSNPP+GK W+ D + +  +    +  RF            + + SDG ++
Sbjct: 298 FVSNQFDFMLSNPPYGKSWKTDLERMGGKGDI-KDPRFVISYADEPEYEMITRSSDGQLM 356

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL++   K++     G R A V + S LF G AG GES IRRW++END +EAI+ALP ++
Sbjct: 357 FLVNKLMKMKESSKLGSRIAHVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIIALPENI 416

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+NRK++ER+GKVQLI+AT  + S+R N GKK   ++D+   QI ++ 
Sbjct: 417 FYNTGIATYIWVLTNRKSQERKGKVQLIDATKWYQSLRKNLGKKNCELSDEHIAQICNLV 476

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           V     + S+M     FGY +I V RPLR+S  L +  L++ +      K     ++   
Sbjct: 477 VHPIETEQSKMFPNEAFGYYKITVERPLRLSVQLSEKQLSKFKQQCIAAK-----ETGLF 531

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            I++ +   +            +  +N AK++ VK S   +    +     D  A+PV  
Sbjct: 532 SIVEVLANHLGEGPHKNYNQFINQLNNHAKSMSVKLSAKNVKFLRDNLATVDDEAEPVIK 591

Query: 577 V------------NG-------------EWIPDTNLTEYENVPYLE--SIQDYFVREVSP 609
                        NG             E+  DTNL + E VP LE   I  +F REV P
Sbjct: 592 KIHKLGSVNANPINGLFEMNINGKDVIVEYEADTNLRDSEQVPILEENGIPAFFQREVLP 651

Query: 610 HVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLE 669
           + PDA+ID             +GYEI+F + FY+  P R L++I A++  +E +   LL 
Sbjct: 652 YAPDAWIDI--------SKNTIGYEISFTKHFYRPTPMRTLEEIKADIYAIERETEGLLG 703

Query: 670 EMATE 674
           E+  E
Sbjct: 704 EIIGE 708


>gi|50086400|ref|YP_047910.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter sp. ADP1]
 gi|49532376|emb|CAG70088.1| putative type I restriction-modification system DNA methylase
           (HsdM) [Acinetobacter sp. ADP1]
          Length = 751

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 231/765 (30%), Positives = 359/765 (46%), Gaps = 112/765 (14%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MT      +    +   +W  A  + G ++   + +V+LP  +L R +  L P    ++ 
Sbjct: 7   MTNEVNQHSQHGKIVGLVWSIANIIRGPYRPPQYRRVMLPLIVLGRFDAILAPYADEMKA 66

Query: 58  KYLAFGGSNIDLES-----------FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYI 104
            Y     +  D                K    + YN S ++L  L         NL  YI
Sbjct: 67  SYEKAVATLQDKTPNVFLQKQLSQIADKDRKQNLYNISGFNLKKLLDDPDQFTANLTKYI 126

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------SGIELHPDTVPDRVMSNI 158
             FS  AK IF  F+F+  I +L+ A  LYK+ + F      SG+ L P +V +  M  +
Sbjct: 127 DGFSPKAKDIFAKFEFAKEIEKLDDANRLYKVFQEFRNGLGESGLSLAPSSVSNLQMGYL 186

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+R+F  + +E A D  TPR+V+ L   L+ + D     ++ G+ R++YDPT GTGG
Sbjct: 187 FEELVRKFNEQANEEAGDHFTPREVIELMVNLIFEEDQDELVKA-GVHRSIYDPTAGTGG 245

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L+++   +        +      +GQE  PE++A+C + +LI+        + ++NI  
Sbjct: 246 MLSESEKFLKKYNDKISLD----MYGQEYNPESYAICCSDLLIK-------DEPAENIVY 294

Query: 279 GSTL------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           G TL             +D    K FHY  SNPPFG +W+  KD +++E K G  GRFG 
Sbjct: 295 GDTLGVKNAKEKDGYVPRDGHADKDFHYMFSNPPFGVEWKNQKDFIDEEEKQGFSGRFGA 354

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           GLP+I+DGS+LF  H+ +K++  P  GG   R A+V + SPLF G AGSGES IRRW++E
Sbjct: 355 GLPRINDGSLLFAQHMISKMKASPENGGEGSRIAVVFNGSPLFTGDAGSGESNIRRWIIE 414

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRR 442
           ND +EAI+ALP  +F+ T I TY+WI+SN+K+E+R+GKVQLI+ T  +  + ++ G KR 
Sbjct: 415 NDWLEAIIALPDQMFYNTGIYTYIWIISNKKSEQRKGKVQLIDGTAHYQKMAKSLGNKRH 474

Query: 443 IINDDQRRQILDIYVSRENGKF--------------SRMLDYRTFGYRRIKVLRPLRMSF 488
            ++     ++   Y   E+                 S++ + + FGY ++ V RPLR++F
Sbjct: 475 ELSKAHIAELTKFYSKFEDQDTSALIQSKTGEAKICSKIFNNQDFGYLKLTVERPLRLNF 534

Query: 489 ILDKTGLARLEADITWRKLSPLHQSF---------------WLDILKPMMQQIYPYGWAE 533
            +    +A L+    +  L+   +                    I   +  +I    W  
Sbjct: 535 TISAERIALLDDQSAFTSLAKSKKVKDTAEISKEEQAGRLQQEAIKNALTAKISDQVWKN 594

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
                 +     K L  K       A + A   +D  AD   D  G   PDT L + E V
Sbjct: 595 RDEFLKVLDPILKGLTFKLGAPVKKAILEALSERDQTADICKDSKGNIEPDTQLRDTELV 654

Query: 594 PYLESI-------------------------QDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
            + + +                         + Y   EV PHV DA+I        D   
Sbjct: 655 AFPDHLTLPLPVNYDKEPDLSKLLPLVKAHCEAYLKAEVLPHVADAWI--------DYSK 706

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +VGYEI  NR FY Y+P R L++I AE+  +E +I  +L  ++ 
Sbjct: 707 TKVGYEIPINRHFYIYEPPRPLEEIKAEIVQLEQEIMQMLGGLSA 751


>gi|237809017|ref|YP_002893457.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
 gi|237501278|gb|ACQ93871.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
          Length = 797

 Score =  660 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/804 (28%), Positives = 355/804 (44%), Gaps = 158/804 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQQEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYN S+++L TL +  T        N   Y+  FSDN K I  
Sbjct: 66  NAVELDDEPLKAASGYVFYNISKWTLKTLHAAATNNQQILLQNFNEYLNGFSDNVKEIVG 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVP-----------DRVMSNIYEHLI 163
            F+  S I  + +  +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 RFNLKSQIRHMAEKQVLLDVVEKFISPNINLTPQECEDASGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQL----PLTMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +          +  +G+E+  ET+A+C + M+I+  +         NI+ GSTLS
Sbjct: 242 QNFIEEKYPAVGASRDIHLYGKEINDETYAICKSDMMIKGNDP-------ANIKIGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------------GL 328
            D F+  RF + LSNPP+GK W  ++  + KE       RF                   
Sbjct: 295 TDEFSHMRFDFMLSNPPYGKSWASEQKNI-KEGTEVIDPRFKVQLTDYWGKVDAKGSDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++ P NG  G R A V + S LF G AG GES IRR+L+END+
Sbjct: 354 PRSSDGQLLFLMEMVSKMKAPVNGTIGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDM 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLNNNKPERRKGKVQLIDASQLFRKLRKNLGNKNCEFA 473

Query: 446 DDQRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I+  Y+     +             S++ +   FGY ++ V RP R        
Sbjct: 474 PEHIAEIMQTYLEFNEVERQLDANGDAIGLASKIFNNEDFGYFKVTVERPDRRKAQFSAE 533

Query: 494 GLARLEADITWRKLSP-------------------------------------------- 509
            +A L  D +  +                                               
Sbjct: 534 RIAPLRFDKSLSEAMEYCYGEYNDKVYQAGFLAEQGKHITDWCEKNDISLNNKAKEKLLD 593

Query: 510 ----LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
               L     LD  + +M+ +    + +  + +       K   +K S     A +NA  
Sbjct: 594 TAFWLSSRKLLDAAQTLMEGVGEAEFTDFNLFKDKVDAALKASSLKLSAPEKNAILNAVS 653

Query: 566 RKDPRADPVTD---------------------------------VNGE---WIPDTNLTE 589
             D  A+ V                                     GE   +   ++L +
Sbjct: 654 WYDETAEKVVKKVLKLSADKLAELLELYSCEEGDLPDFGYYPHGKKGEFVTYESSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E+VP  +SI  YF+ EV PHV +A+++         E  ++G EI+FN++FY+++P RK
Sbjct: 714 TESVPLKQSIYQYFLDEVKPHVAEAWLN--------MESVKIGCEISFNKYFYRHKPLRK 765

Query: 650 LQDIDAELKGVEAQIATLLEEMAT 673
           L+ +  E+  +E Q   L+ ++  
Sbjct: 766 LEAVAQEIIDLEKQADGLIAQILG 789


>gi|88811657|ref|ZP_01126911.1| type I restriction-modification system, M subunit [Nitrococcus
           mobilis Nb-231]
 gi|88791048|gb|EAR22161.1| type I restriction-modification system, M subunit [Nitrococcus
           mobilis Nb-231]
          Length = 767

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/779 (28%), Positives = 359/779 (46%), Gaps = 126/779 (16%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +   + +FIW  A+D L   F+   +  VILP  ++RR++  LEPT+  V +     
Sbjct: 2   DQATHNKIVSFIWGIADDVLRDLFRRGKYPDVILPMCVIRRMDAVLEPTKQTVLDTKKML 61

Query: 63  GGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116
             + I  +  +    AG +FYNTS+++L  L S  ++     + E Y+  FS N + I E
Sbjct: 62  DEAQITEQRAALCDAAGQAFYNTSKFTLRDLTSRGSQQQLLADFEDYLNGFSANVQDILE 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +F F + +  L ++  L  +   F    I+L P  + +  M  ++E L+R+F  E +E A
Sbjct: 122 NFKFRNQLPTLSRSDSLGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPRD V L   L+  P +A  K        LYD  CGTGG LT A   +A   +  
Sbjct: 182 GEHWTPRDAVRLMANLVFLPIEAEIKSG---TYLLYDCACGTGGMLTVAEETLAAIAAKR 238

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKR 291
                 + +GQE+ PET+AVC + ML++        + + +I  G   STLS D +  + 
Sbjct: 239 GQQVTTLLYGQEINPETYAVCKSDMLLKG-----EGESADHIVGGAEWSTLSHDAYPAQE 293

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPKISDGSMLFLMHLA 343
           F + L+NPP+GK W+KD +A+  +       RF           + + SDG MLFL ++A
Sbjct: 294 FDFMLANPPYGKSWKKDLEAMGGK-TGMRDPRFKVMHNGEELSLVTRSSDGQMLFLANMA 352

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +K+      G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T I
Sbjct: 353 SKMNDKSILGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGI 412

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462
           ATY+W+LSN+K   R G+VQLI+A+  +  +R N GKK   ++ +   +I   ++  +  
Sbjct: 413 ATYVWVLSNKKPAHRTGQVQLIDASRWFKPLRKNLGKKNCELSTEDIERISRTFLDFKET 472

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD----- 517
             S++     FGY ++ V RPLR+   L +  +  L       +L  +    + +     
Sbjct: 473 PESKIFPNAAFGYWKVTVERPLRLHSQLSRKAIETLRFASGDEELRAMLFDEFGEELFAN 532

Query: 518 ---ILKPMMQQIYPYGWAESFVKESIKSNEAKT--------------------------- 547
              I  P+ +++  +G  E    E   +   K                            
Sbjct: 533 FSRIANPLEKRLADWGSDEDEGDEDEDATTKKGLPEKKRKKLLDRKTWARDGRLVEVATK 592

Query: 548 --------------------------LKVKASKSFIVAFINAFGRKDPRADPVTDVN--- 578
                                     L +K   + +   + A   +   A PV       
Sbjct: 593 LRAELGDALFEDHNIFRERVSAALKNLGLKLPAAELKLILKAVSWRVETAPPVIAKVHRP 652

Query: 579 GE----------------------WIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDA 614
           G+                      + PD+ L + E VP LE   I+ +  REV P+ PDA
Sbjct: 653 GKAQADPLHGLFEATVGDKPAIVAYEPDSELRDTEQVPLLEEGGIEAFIRREVLPYTPDA 712

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +I         ++  ++GYE++F R FY+ QP R L++I A++  +E +   LL+++  
Sbjct: 713 WI--------KEDATKIGYEVSFTRHFYKPQPLRTLEEIRADILAIEKEAEGLLDDILG 763


>gi|238761819|ref|ZP_04622793.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638]
 gi|238699933|gb|EEP92676.1| N-6 DNA methylase [Yersinia kristensenii ATCC 33638]
          Length = 756

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/765 (35%), Positives = 380/765 (49%), Gaps = 140/765 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-----SFVKVAGYSFYNTSEYSLS 89
           ILPFTLLRRLEC L PT+ AV  +      S +  E           G SF+NTS   L 
Sbjct: 2   ILPFTLLRRLECVLAPTKDAVVAEAEKLKTSPLPEEGREKFLLRATKGLSFFNTSPMDLG 61

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            +G  + R NL++Y+  FS +A+ IFE F F+  +  L+ A LL+KI K F+  +L P+ 
Sbjct: 62  KIGQNDIRANLDNYVQCFSKDAREIFEHFKFTEFVGLLDDANLLFKIVKKFATTDLSPNA 121

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           + +  M  ++E LIRRF    +E A +  TPRD+V L T+L+   D+    +  G+IRT+
Sbjct: 122 ISNYEMGLVFEELIRRFAESSNETAGEHFTPRDIVRLTTSLVFMEDNDALSKD-GIIRTI 180

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT GTGGFL+  M +V +   +     ++   GQEL PE++A+C A MLI+  +    
Sbjct: 181 YDPTAGTGGFLSSGMEYVHELNPNA----VMRAFGQELNPESYAICKADMLIKGQDV--- 233

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGL 328
                 I+ G+TLS D     +F Y LSNPPFG  W+K +  +  EH+  G  GRFGPGL
Sbjct: 234 ----SRIKLGNTLSNDQLPQDQFDYMLSNPPFGVDWKKIEGEINDEHQLKGFNGRFGPGL 289

Query: 329 PKISDGSMLFLMHLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           P++SDGS+LFLMHL +K+    N       GGR  I+L+ SPLF G AGSGESEIRR++L
Sbjct: 290 PRVSDGSLLFLMHLISKMRDNHNLDGSVSNGGRIGIILNGSPLFTGGAGSGESEIRRYIL 349

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKR 441
           E DL+E IVALPTD+F+ T IATY+WILSN+KT ER+ KVQLI+ T+L   +R   G KR
Sbjct: 350 EADLLEGIVALPTDMFYNTGIATYVWILSNKKTPERKDKVQLIDGTNLCGKMRKSLGSKR 409

Query: 442 RIINDDQRRQILDIYVSRENGK----------------------------------FSRM 467
            I+ +D  + I   +   E  +                                   S++
Sbjct: 410 NIMGEDDIKLITRTFGDFEVVETTTLEALGLEKAPEQKSNRGRQSATAKIEAPKTFASKI 469

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLE---------------------------- 499
            +   FGYRR+ + RPLR+S  +    +A L                             
Sbjct: 470 FNSTDFGYRRLTIERPLRLSAQVTDEAIATLRFAPKPFSAPMERLYGEFAGQWQDDNYGD 529

Query: 500 ----------------ADITWRKLSPLHQSFWLDILKPMMQQIYP-------------YG 530
                           A++  +++  L         + +M +                  
Sbjct: 530 FTGLEVEARAIIKAEFAELKEKQIKDLLDRKLWLAQRALMDKAQQIQTALGAKAGGKTQV 589

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD-------------- 576
             +    +       KT  VK        FI+A   K+P A+PV                
Sbjct: 590 SDDFNEFQLTLKGAIKTAGVKLDTKENKQFIDAITTKNPDAEPVVKKILKEAVQPLYGAF 649

Query: 577 ----VNGEWIPDTNLTEYENVPYL------ESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
                  E+  D  L + ENVP        + I++YF  EV PHV DA+I+    D KD 
Sbjct: 650 EYQGKVVEFEQDGELRDNENVPLNPAIATSDLIENYFKAEVLPHVADAWINADKRDAKDG 709

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           EIG VGYEI FNR FY YQP R L++IDA+L  V A+I  LL+E+
Sbjct: 710 EIGIVGYEIPFNRHFYVYQPPRPLEEIDADLDAVSAEIMKLLQEV 754


>gi|332666807|ref|YP_004449595.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332335621|gb|AEE52722.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 788

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 233/801 (29%), Positives = 361/801 (45%), Gaps = 155/801 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEELAFQRDEA 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             +  D       +GY FYNTS+++L  L  T T        N E Y+  FS N K I E
Sbjct: 66  KFTEWDENGLRDASGYVFYNTSKWTLQLLKDTATNNQQILQANFEDYLNGFSPNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLI 163
            F   S +  +    +L  + + F+   ++                  +  M  ++E LI
Sbjct: 126 KFKLKSQVRHMAAKDVLLDVLEKFTSPAINLTPFEKTDPDGRKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ +P           + T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLIFEPVARQL----PPVMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V D     +    +  +G+E+  ET+A+C + M+I+  +        +NI+ GSTLS
Sbjct: 242 QNFVKDEEGIIQAKGDVYLYGKEINDETYAICKSDMMIKGNDP-------ENIRVGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F GK F + LSNPP+GK W  ++  ++   K     RF                 P+
Sbjct: 295 TDEFAGKTFDFMLSNPPYGKSWASEQKYIKD-GKEVIDSRFKIKLTDYWGQVEEADATPR 353

Query: 331 ISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++       G R A V + S LF G AG GES IRR+L+END +E
Sbjct: 354 SSDGQLLFLMEMVNKMKPLSQSPLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWLE 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LSN K   R+GKVQLI+A  L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSNHKAASRQGKVQLIDAGLLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYVSRENGKFS-------------RMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
             R+I+ +Y   +  + S             ++ D   FGY ++ + RP R+        
Sbjct: 474 HIREIVSVYEEMQEIERSINPSTQEGEGIAAKVFDNADFGYYKVSIERPKRLKAQFTLER 533

Query: 495 LARLEADITWRK---------------LSPLHQSFWLDILKP------------------ 521
           +A L  D + R+                   H+   LD  +                   
Sbjct: 534 IAELRFDKSLREPMVWAYETYGEAVYTDLAKHEKDILDWCEKQDLNLNAKQSKALVSPAL 593

Query: 522 -------------MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                        +MQ I    + +    ++      KT K K S S   + +NA    D
Sbjct: 594 WHKQLELLALAAELMQAIGGSAYTDFNRFKNEVDAVLKTKKTKLSASEKNSILNAVSWYD 653

Query: 569 PRADPVT---------------------------------DVNGE---WIPDTNLTEYEN 592
             A  V                                  D  GE   +  +++L + EN
Sbjct: 654 AEAAKVEKATLKLTGDKLAQLLAQLGCTEAQLPDYGYYPSDKKGEYLTYETESDLRDTEN 713

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP  E+   YF+REV PHVP+A+I+            ++GYEI+FN++FY+++P R +++
Sbjct: 714 VPLKENSYRYFLREVKPHVPEAWINLD--------ATKIGYEISFNKYFYRHKPLRSIEE 765

Query: 653 IDAELKGVEAQIATLLEEMAT 673
           + A++  +E++   L+ E+ +
Sbjct: 766 VSADILKLESESDGLIREILS 786


>gi|229198632|ref|ZP_04325334.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus m1293]
 gi|228584914|gb|EEK43030.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus cereus m1293]
          Length = 679

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 232/702 (33%), Positives = 354/702 (50%), Gaps = 64/702 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
                 NFIWKNAE L G +K  ++ +V+LP  +LRR +C L+PT+  V E+        
Sbjct: 5   QNNEFVNFIWKNAEILRGPYKKEEYQEVVLPLCVLRRFDCLLQPTKQQVLERAKVVKHDA 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           I      K+ GY F NTS++   TL     N   NL +YI  FS + + IFE F F + I
Sbjct: 65  I----LNKITGYDFNNTSQFDFQTLLKDPDNIAANLRNYIQGFSVDIRTIFERFGFDTQI 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++++  LLY + + FSGI+L    V +  M  I+E  IRRF    +  A D  TPR+V+
Sbjct: 121 QKMDEHNLLYSVVQVFSGIDLSIQRVSNIQMGYIFEEFIRRFSE--NAEAGDHYTPREVI 178

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   L+L+ D +      G I  + D  CGTGG L++A  ++ +   + ++       G
Sbjct: 179 QLMVNLVLNEDQSEL-MQEGKIVQIGDFACGTGGMLSEATRYIQELNPNAQVE----VFG 233

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGK 303
           QE+ P+++A+  A +LI+          + +I  G++L+  D     +  Y L NPPFG 
Sbjct: 234 QEINPKSYAIACADLLIKGQN-------AGHIAFGNSLTNTDGHKDLQVRYALMNPPFGV 286

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            W+   + +++EH+  G+ GR+G GLP+ SDGS+LFL H+ +K++     G R AI+ + 
Sbjct: 287 DWKHYGEGIKEEHEEKGKDGRYGAGLPRTSDGSLLFLQHMISKMKRDEK-GSRMAIIFNG 345

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----- 417
           SPLF G AGSGESEIRRW++E DL+E IVALP  LF+ T I+TY+WILSNRK ++     
Sbjct: 346 SPLFTGDAGSGESEIRRWIIEEDLLEGIVALPDQLFYNTGISTYIWILSNRKNDDLVKGA 405

Query: 418 -RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+GK+QL++AT     +R   G KR  I + Q   I  +Y   +  ++ ++ D   FGY
Sbjct: 406 VRKGKIQLVDATSFAEKMRKSLGNKRNEITEPQIAGITRMYGEFKENEYCKIFDLEDFGY 465

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH------------------------ 511
            +I V RPL+++F++    +  L  + T+ KL                            
Sbjct: 466 HKITVERPLQLNFMISPKRIENLYNEATFAKLYDKEAYTELSRKKDKKPADMKKLEKWDE 525

Query: 512 -QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            +     IL  + + I    +              K +  +       A       +D  
Sbjct: 526 GKMLQEKILAILQENISDTLYKNREDFLKGLKPLFKNV-PEVKAGLWKAIYMGLSERDEI 584

Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630
           AD   D   +   D  L + EN+   E IQ+YF REV  HVPDA+I        D+   +
Sbjct: 585 ADVCKDTKRKVEADPTLRDTENISLKEDIQEYFGREVLTHVPDAWI--------DESKTK 636

Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +GYEI F R+FY+Y+       +      +E  I  LL+++ 
Sbjct: 637 IGYEIPFTRYFYKYEQLESSSVLKQRAIQLEENIQELLKKVL 678


>gi|110639316|ref|YP_679525.1| restriction/modification methyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281997|gb|ABG60183.1| restriction/modification methyltransferase [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 783

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 227/801 (28%), Positives = 359/801 (44%), Gaps = 151/801 (18%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+    
Sbjct: 2   NQAVHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKDAVLEEMAFQ 61

Query: 63  GGS----NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAK 112
                    D     + +GY FYNTSE++L  L  T T        N E Y+  +S N K
Sbjct: 62  KDEAKFTEWDENGLRQASGYVFYNTSEWTLQRLHDTATNNQQILQANFEDYLKGYSGNVK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIY 159
            I E F+    +  +    +L  + + F+   ++                  +  M  ++
Sbjct: 122 EIIEKFNLKRQVQHMASKDVLLNVLEKFTSSYINLTPFEKNDPDGRKLPPLSNLGMGYVF 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LIR+F  + +E A +  TPR+V+ L T ++ +P           + T+YDP CG+GG 
Sbjct: 182 EELIRKFNEDNNEEAGEHFTPREVIDLMTHIIFEPIKDKL----PPVMTIYDPACGSGGM 237

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT++ N + D     K    +  +G+E+  ET+A+C + M+I+           +NI+ G
Sbjct: 238 LTESQNFIKDEDGEIKAKGDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVG 290

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------P 326
           STLS + F G  F + LSNPP+GK W  ++  ++   K+    RF               
Sbjct: 291 STLSTNEFAGTTFDFMLSNPPYGKSWASEQKFIKD-GKDIIDPRFKIKLQNYWGIEEEAD 349

Query: 327 GLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             P+ SDG +LFLM + NK++       G R A V + S LF G AG GES IRR+++EN
Sbjct: 350 ATPRSSDGQLLFLMEMVNKMKPLSQSKLGSRIASVHNGSSLFTGDAGGGESNIRRYIIEN 409

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D +EAIV +P +LF+ T I TY+WILSN K+ +R+GKVQLI+A  ++  +R N G K   
Sbjct: 410 DWLEAIVQMPNNLFYNTGITTYIWILSNNKSNKRKGKVQLIDAGFMFRKLRKNLGNKNCE 469

Query: 444 INDDQRRQILDIYV---------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
              +  R+I+ +Y            E G  S++ D   FGY ++ + RP R+        
Sbjct: 470 FAPEHIREIVSVYEKMQAVDRKVDDEQGISSKVFDNTDFGYYKVTIERPKRLKAQFTAER 529

Query: 495 LARLEADIT-----------------------------WRKLSPL--------------- 510
           +  L  D T                             W + + L               
Sbjct: 530 IEELRFDKTLREPMAWAYETYREKVYTEIAKHEKAIIEWCEKNELNLNAKQTKTLVTQAT 589

Query: 511 --HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
              Q   + +   +M++I    + +  + +          K+K S S   A +NA    D
Sbjct: 590 WQKQLDLVTLAMDLMKKIGSKEFNDFNLFKERVDEALAAKKLKLSSSEKNAILNAVSWYD 649

Query: 569 PRADPVTD---------------------------------VNG---EWIPDTNLTEYEN 592
             A+ V                                     G   E+  ++NL + EN
Sbjct: 650 ADAEKVVKGTTKLAGDKLKELLAYLGCKEKELGDYGYFATEKKGEYLEYETESNLRDTEN 709

Query: 593 VPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQD 652
           VP  E+I  YF+REV PHV +A+I+            ++GYEI+FN++FY+++P R ++D
Sbjct: 710 VPLKEAIYTYFLREVKPHVGEAWINLD--------ATKIGYEISFNKYFYKHKPLRSIED 761

Query: 653 IDAELKGVEAQIATLLEEMAT 673
           + A++  +E +   L+ E+  
Sbjct: 762 VTADILALEKESDGLIAEILG 782


>gi|307826308|ref|ZP_07656515.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
 gi|307732664|gb|EFO03534.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
          Length = 789

 Score =  655 bits (1689), Expect = 0.0,   Method: Composition-based stats.
 Identities = 220/805 (27%), Positives = 358/805 (44%), Gaps = 154/805 (19%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M     +   L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++ V E+ 
Sbjct: 1   MNH--AAHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKAKVLEEL 58

Query: 60  LAFGGS----NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109
                      +D       +GY FYNTS+++L+ L  T T        N+E Y+  +S 
Sbjct: 59  AFQRNDMGLTELDDNGLKDASGYVFYNTSKWTLNQLFKTATNNQQILLANVEEYLNGYSA 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMS 156
           N K I + F+  + +  +    +L  + + F+   ++                  +  M 
Sbjct: 119 NVKEIIDKFNLKAQVRHMAGKDVLLDVLEKFTSPNINLTPHEVEDPDGNRLPALTNLGMG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIR+F  + +E A +  TPR+V+ L T L+ DP           + T+YDP CG+
Sbjct: 179 YVFEELIRKFNEDNNEEAGEHFTPREVIELMTHLIFDPVKDKI----PPVMTIYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT++ N + D     +    +  +G+E+  ET+A+C + M+I+            NI
Sbjct: 235 GGMLTESQNFIKDEEGAIRATGDVYLYGKEINDETYAICKSDMMIKGNNP-------SNI 287

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------- 326
           + GSTLS D F G RF + LSNPP+GK W  ++  ++    +    RF            
Sbjct: 288 RVGSTLSTDEFAGTRFDFMLSNPPYGKSWASEQKYIKD-GADVIDPRFRVTLKDYWGNPE 346

Query: 327 ---GLPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                P+ SDG +LFLM + +K++   N   G R A V + S LF G AG GES IRR +
Sbjct: 347 TVDATPRSSDGQLLFLMEMVSKMKSLDNSPYGSRIASVHNGSSLFTGDAGGGESNIRRHI 406

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440
           +ENDL+EAI+ LP +LF+ T I TY+W+LSN K + R+GKVQLI+A+ L+  +R N G K
Sbjct: 407 IENDLLEAIIQLPNNLFYNTGITTYIWLLSNNKAQPRKGKVQLIDASQLYRKLRKNLGNK 466

Query: 441 RRIINDDQRRQILDIYVSRENGKF--------SRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                 +  R+I+  Y+     +         +++ D   FGY ++ + RP R       
Sbjct: 467 NCEFAYEHIREIVTAYLQLATKERQADDAGIAAQVFDNSDFGYYKVNIERPDRRKAQFSN 526

Query: 493 TGLARLEADITWRK---------------------------------------------L 507
             +  L  D + R+                                             L
Sbjct: 527 ERIETLRFDKSLREPMQWIYSQWGEAVYQPGTLDEREKAILVWCDENELNLNTKNRQKLL 586

Query: 508 SPLHQSFWLD---ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           SP      LD     K +M  I     ++    +       K   +K S     A +NA 
Sbjct: 587 SPNTWKKQLDLVQAAKALMAAIGEAESSDFNQFKGQVDEALKAQGIKLSAGDKKAILNAV 646

Query: 565 GRKDPRADPVT---------------------------------DVNGE---WIPDTNLT 588
              D  A+ V                                  D  GE   +  +T+L 
Sbjct: 647 SWYDETAEKVIAQKLKLGGDKLDQLLHHLDCTEQDLPDYGYYSTDKKGEYLSYETNTDLR 706

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + E++P    I+ YF+ EV PHV +A+I+            ++GYEI+FN++FY+++P R
Sbjct: 707 DSESIPLKGDIRSYFLAEVKPHVAEAWINLD--------STKIGYEISFNKYFYRHKPLR 758

Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673
            ++++ +++  +E +   L+ ++  
Sbjct: 759 SMKEVASDIIALERRAEGLIADILG 783


>gi|257095816|ref|YP_003169457.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257048340|gb|ACV37528.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 769

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/772 (28%), Positives = 353/772 (45%), Gaps = 127/772 (16%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +   + +FIW  A+D L   FK   +  VILP  ++RR++  LEPT+ +V +     
Sbjct: 2   DQATHNKIVSFIWGIADDVLRDLFKRGKYPDVILPMCVIRRMDAVLEPTKQSVLDTRRML 61

Query: 63  GGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116
             + I  +  +    AG +FYNTS ++L  L S  ++     + E Y+  FS N + I +
Sbjct: 62  DAAGITEQRAALCDAAGQAFYNTSRFTLRDLKSRGSQQRLLADFEDYLNGFSANVQDILD 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +F F + +  L +A  +  +   F    I+L P  + +  M  ++E L+R+F  E +E A
Sbjct: 122 NFKFRNQLQTLSRADAIGTLINKFLDPDIDLSPAGIDNHSMGTVFEELVRKFNEENNEEA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPRD V L   L+  P ++  +        LYD  CGTGG LT A   +    +  
Sbjct: 182 GEHWTPRDAVRLMANLVFRPIESAIRSG---TYLLYDCACGTGGMLTVAEETLTAIAAGR 238

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKR 291
                 + +GQE+ PET+AVC A ML++        + + +I  G   STL+ D F  + 
Sbjct: 239 GQQVRCLLYGQEINPETYAVCKADMLLKG-----EGESADHIVGGAEWSTLAHDAFPARE 293

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPKISDGSMLFLMHLA 343
           F + L+NPP+GK W+KD +A+  +       RF           + + SDG MLFL ++A
Sbjct: 294 FDFMLANPPYGKSWKKDLEAMGGK-DGMRDPRFKVMHQGEELSLVTRSSDGQMLFLANMA 352

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +K+      G R A V + S LF G AG GES IRRWL+END +EAIVALP +LF+ T I
Sbjct: 353 SKMNGQSALGSRIAEVHNGSSLFTGDAGQGESNIRRWLIENDWLEAIVALPLNLFYNTGI 412

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462
           ATY+W+LSNRK   R+G+VQLI+A+  +  +R N GKK   ++ +   +I   ++     
Sbjct: 413 ATYIWVLSNRKPAHRQGRVQLIDASQWFKPLRKNLGKKNCELSPEDIERISRSFLDFAET 472

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL--- 519
             S++     FGY ++ V RPLR+   L    +  L  +     L       + D L   
Sbjct: 473 PESKIFPNAAFGYWKVTVERPLRLYSQLSLKAIETLRFNSGDEDLRATLYEEFGDDLFTR 532

Query: 520 -----KPMMQQIYPYGWAESFV-----------------KESIKSN-------------- 543
                  + +++  +G ++                    K+ +                 
Sbjct: 533 FSAVSAALEKRLADWGSSDDSEGEDDEGGGTKKGLPERQKKKLLDARTWERDGRLVDVAT 592

Query: 544 -----------------------EAKTLKVKASKSFIVAFINAFGRKDPRADPVT----- 575
                                    K   +K + + +   +     +D  A PV      
Sbjct: 593 RLRVLLGEALFDDHNAFRDRVDTALKAAGIKLAAADLKQILKVVSWRDESAPPVIARVHK 652

Query: 576 ---------------DVNG-----EWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPD 613
                           V+G     E+ PD +L + E VP LE   I  +  REV P+ PD
Sbjct: 653 PGKLRAEPLRGFYEATVDGRSSIVEYEPDADLRDTEQVPLLEDGGIAAFIRREVLPYTPD 712

Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           A+I         ++  ++GYEI+F R FY+ QP R L++I A++  +E +  
Sbjct: 713 AWI--------KEDATKIGYEISFTRHFYKPQPLRTLEEISADILAIEKEAE 756


>gi|150017996|ref|YP_001310250.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052]
 gi|149904461|gb|ABR35294.1| N-6 DNA methylase [Clostridium beijerinckii NCIMB 8052]
          Length = 673

 Score =  652 bits (1683), Expect = 0.0,   Method: Composition-based stats.
 Identities = 229/690 (33%), Positives = 371/690 (53%), Gaps = 48/690 (6%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFGGS 65
           +  +F+W  AE L G +K  D+ KV++P  ++RR +C L+     + +K    Y      
Sbjct: 6   NFVSFLWNIAESLRGTYKEEDYRKVMIPMIVVRRFDCLLDDYDKEIIKKVYSNYDYMPEE 65

Query: 66  NIDLESFVKVA-----GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
            ID      +         FYN S+++   L   S N + N E Y+  FS+N K I   F
Sbjct: 66  EIDEIVIADLKENHNIDLQFYNVSDFTWKKLLDDSENIKANFEEYLNGFSNNVKEIIGKF 125

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +F + I +L+K   LY + +  S ++LH + + +  M  IYE ++RRF    +  A +  
Sbjct: 126 NFKAEITQLDKKNKLYAVLQKMSEVDLHINKISNNKMGYIYEEMLRRFTENSA--AGEQY 183

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L    ++      G + ++ D  CGTGG L+ A  +V +      +  
Sbjct: 184 TPREVIKLCMEMLFLGKESFIT-EEGKVISIADFCCGTGGMLSIAEAYVENLNEKAIVD- 241

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQEL  E+ A+C A ML++    D       NI+ G+TL++D F+G+   + +SN
Sbjct: 242 ---VYGQELLDESFAICQADMLMKGQNPD-------NIRLGNTLTEDRFSGEHMRFLISN 291

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG  W+ ++  V+ E   G  GRFG G P++SDGS+LFL ++ +K+      G R AI
Sbjct: 292 PPFGVTWKDEEKKVKDEADLGFDGRFGAGTPRVSDGSLLFLQNMISKMYDD-EEGSRIAI 350

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF G AGSGES IRRW++END++E I+ALPTD+F+ T IATY+W+++NRKTE R
Sbjct: 351 IFNGSPLFTGDAGSGESNIRRWIIENDMLEGIIALPTDMFYNTGIATYIWVITNRKTENR 410

Query: 419 RGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +GK+QL+NATD +  +R   G KR+ I+ +Q ++I  IY S E  +  R+ D + FGYR+
Sbjct: 411 KGKIQLVNATDFYVPMRKSLGNKRKEISTEQIQEIKSIYESFEPSENCRIFDNKEFGYRK 470

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD--------------ILKPMM 523
           I + RPL++SF +D+  +++++    +  L+   +                   I++ + 
Sbjct: 471 ITIERPLKLSFKVDEEAISKVKETTQFINLAVSKKKDEAAKASEEALGKEVQNKIIEMLQ 530

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
                  +           ++AK   +    + + A  ++ G ++  AD   D  G    
Sbjct: 531 SFDSNEVYLNREEFIKKVKSKAKNYDLTLGAALLKAIWSSIGERNEDADICKDSKGNPES 590

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           D++L + E++   E I  YF REV PHVPDAY+D+            +GYEI F R FY+
Sbjct: 591 DSSLKDTESIQLKEDINAYFEREVKPHVPDAYMDETTFSN-------IGYEIPFTRHFYK 643

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           Y+  R   DI  E++ +E +IA  ++++  
Sbjct: 644 YEKLRAFSDIMKEVEDLEQEIAVEIKKVLG 673


>gi|284041086|ref|YP_003391016.1| N-6 DNA methylase [Spirosoma linguale DSM 74]
 gi|283820379|gb|ADB42217.1| N-6 DNA methylase [Spirosoma linguale DSM 74]
          Length = 787

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 224/807 (27%), Positives = 361/807 (44%), Gaps = 156/807 (19%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M     S   L +FIW  A+D L   +    +  VILP  +LRRL+  LEP +  V E+ 
Sbjct: 1   MNH--QSHNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPGKDEVMEEV 58

Query: 60  ----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109
                  G + +D+      +GY FYNTS ++L  L  T T        N   Y+  FSD
Sbjct: 59  RFQREEAGFTELDVNGLQAASGYVFYNTSVWTLQKLHDTATNNQQLLEANFTDYLDGFSD 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMS 156
           N K I   F+  S +  +    +L  + + F+   ++                  +  M 
Sbjct: 119 NVKEIIRKFNLKSQVKHMANKDVLLDVLEKFTSPTINLTPFEKLDPEGRKLPALSNLGMG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIR+F  E +E A +  TPR+V+ L T ++ +P           + T+YDP CG+
Sbjct: 179 YVFEELIRKFNEENNEEAGEHFTPREVIDLMTHVIFEPIKDRL----PPVMTIYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT++ N + D     +    +   G+E+  ET+A+C + M+I+  +        +NI
Sbjct: 235 GGMLTESQNFIKDEDGLIRAKGDVYLFGKEINDETYAICKSDMMIKGNDP-------ENI 287

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG----------- 325
           + GSTLS D F GK+F + LSNPP+GK W  ++  ++  ++     RF            
Sbjct: 288 KNGSTLSTDEFAGKQFDFMLSNPPYGKSWASEQRHIKDGNE-VIDSRFRIKLKNYWGVEE 346

Query: 326 --PGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
               +P+ SDG +LFLM + +K++       G R A V + S LF G AG GES IRR+L
Sbjct: 347 DADAIPRSSDGQLLFLMEMVSKIKPLAASPSGSRIASVHNGSSLFTGDAGGGESNIRRYL 406

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440
           +ENDL++AI+ LP +LF+ T I TY+W+L+N K   R+GKVQLI+A  L+  +R N G K
Sbjct: 407 IENDLLDAIIQLPNNLFYNTGITTYIWVLTNSKPANRQGKVQLIDAGPLYRKLRKNLGAK 466

Query: 441 RRIINDDQRRQILDIYVS-------RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
              +  +   +I+  Y          ++G  S++ D   FGY ++ + RP R+       
Sbjct: 467 NCELAPEHITEIVKTYQDLAIVDRTGDDGLASKVFDNADFGYYKVTIERPKRLKAQFSAE 526

Query: 494 GLARLEADITWRK----------------------------------------------L 507
            +A L  D   R+                                               
Sbjct: 527 RIAELRFDNKLREPMVWAWETYGERVYTDLPALEKDIIDWCEKQELNLARKQQEALLKPD 586

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
           + L Q   ++    +M+ I    ++   +       E K L +K S S     ++A    
Sbjct: 587 NWLKQQGLMNTATKLMKAIGTDEYSNFNIFAREVEMELKALGLKLSASEKKQIMDAVSWY 646

Query: 568 DPRADPVT----DVNG-------------------------------------EWIPDTN 586
           D  A+ V      + G                                     E+  +++
Sbjct: 647 DAEAEKVIKGTTKLKGEKLTDLLEHLNCTEAQLPDFGYFVTGTPDREKPGEYLEYETESD 706

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + ENVP  E I DYF+REV PHV +A+I+            ++GYEI+FN++FY+++P
Sbjct: 707 LRDTENVPLKEDIHDYFLREVKPHVSEAWINLD--------ATKIGYEISFNKYFYRHKP 758

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673
            R +  + A++  +E +   L++ +  
Sbjct: 759 LRDIAAVSADILQLEDESEGLIKAILA 785


>gi|71737179|ref|YP_272418.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557732|gb|AAZ36943.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 801

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 228/802 (28%), Positives = 353/802 (44%), Gaps = 156/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++ V E+     G  
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKAKVMEELAFQQGEM 65

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
               +D  +    +GY FYNTS+++LS L  T T N      N+E Y+  FSDN K I  
Sbjct: 66  SQTELDDSALRSASGYVFYNTSKWTLSQLQKTATNNQQILLNNVEEYLDGFSDNVKDIVR 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  S +  +    +L  + + F+   ++                  +  M  ++E LI
Sbjct: 126 RFNLKSQMRHMASKDVLLDVLEKFTSPYVNLTPTDIEDPEGNRLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           + T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDSL----PPVMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +          +  +G+E+  ET+A+C + M+I+            +I+ GSTLS
Sbjct: 242 QNFIEEKYPDPTTQRDIHLYGKEINDETYAICKSDMMIKGNNP-------AHIRPGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F G RF + LSNPP+GK W  ++  ++   +     RF                 P+
Sbjct: 295 VDEFAGSRFDFMLSNPPYGKSWASEQKFIKDCGE-VIDPRFKVSLRDYWDNPEMQDATPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++    G  G R A V + S LF G AGSGES IRR L+ENDL++
Sbjct: 354 SSDGQLLFLMEMVNKMKASGEGSLGSRIASVHNGSSLFTGDAGSGESNIRRHLIENDLLD 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LS+ K  +RRGKVQLI+A+ L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSSNKPVQRRGKVQLIDASLLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYVSRE--------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
               I   Y+           +G  +++ D R FGY ++ + RP R         +  L 
Sbjct: 474 HIELITQTYLDLASLDRPAGGDGIAAQVFDNRDFGYHKVSIERPDRRKAQFSAERIETLR 533

Query: 500 ADITWRKLSPLHQSFWLDILKP-------------------------------------- 521
            D   R+        W + L                                        
Sbjct: 534 FDKALREPMQWIYQQWGEALYQDEALATHEKAILAWCEEQGLELNIKQRKKLLNLETWAK 593

Query: 522 ----------MMQQIYPYGWAESFVKESIKSNEAKTL----KVKASKSFIVAFINAFGRK 567
                     +MQ I    + +  +   +     K L     +K   S     +NA    
Sbjct: 594 QALLVTVANYLMQAIGSDEYDDFNLFAKLVDKVLKQLNKEVGIKLGASERNQVLNAVSWY 653

Query: 568 DPRADPVT---------------------------------DVNGE---WIPDTNLTEYE 591
           D  A  V                                  D  GE   +  +++L + E
Sbjct: 654 DENAVKVLRKVEKFDRAELAALLERLDCIEADLADFGYYPSDKAGEWITYESNSDLRDSE 713

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           ++P  +SI  +F  EV PHV +A+I+         E  ++GYEI+FN++FY++QP R   
Sbjct: 714 SIPLADSIHHFFKAEVQPHVEEAWINL--------ESVKIGYEISFNKYFYKHQPLRSTD 765

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  E+  +E Q   L+ E+  
Sbjct: 766 EVAREIIALEQQAEGLIAEILG 787


>gi|294665738|ref|ZP_06731011.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292604474|gb|EFF47852.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 615

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 263/678 (38%), Positives = 372/678 (54%), Gaps = 73/678 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + ASL+ FIW  A+ L GD+K +++G+VILPFT+LRRL+C LE T+ AV  ++ A  
Sbjct: 1   MHLNHASLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDCVLEKTKPAVLAEFDAKT 60

Query: 64  GSNIDLESFVKV-AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            + ++ + F+K  A  SFYNTS   LS L     + R NL +YI +FS  A+ IFE FDF
Sbjct: 61  KAGLNPDPFLKKKARQSFYNTSSLDLSKLLGDQDHIRQNLYAYIQAFSPEARDIFERFDF 120

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + + RL KA LLY + + F+ I+L P+ V +  M +++E LIR+F    +E A +  TP
Sbjct: 121 HAQVERLAKANLLYLVTEKFANIDLPPEVVDNATMGSVFEELIRKFAEISNETAGEHFTP 180

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LL   DD +      ++RT+YDPT GTGG L+ A  ++A+     ++    
Sbjct: 181 REVIRLMVGLLFIEDDDVLTPGNAVVRTIYDPTAGTGGMLSIAGEYLAEHNPQARL---- 236

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           + HGQEL  E++A+C A MLI+           +NI  G+TLS D   G +F Y LSNPP
Sbjct: 237 IMHGQELNDESYAICKADMLIKG-------QAVENIVAGNTLSDDGHAGHKFDYMLSNPP 289

Query: 301 FGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG +W+K +  V  EHK  G  GRFGPGLP++SDGSMLFLMHL  K+    +GG R  IV
Sbjct: 290 FGVEWKKVEKTVRAEHKTKGFDGRFGPGLPRVSDGSMLFLMHLLAKMRPARDGGSRFGIV 349

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSN+K  +R+
Sbjct: 350 LNGSPLFTGGAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNKKPADRK 409

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           G VQLI+A   W  +R   G KR+ + ++    +  ++      +              +
Sbjct: 410 GWVQLIDAGSFWQKMRKSLGSKRKQMGEEHIDTVTRLFGDFTEAEL-------------V 456

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI---YPYGWAESF 535
            V         +D TG A+    +     S         + +  + +I     +G+    
Sbjct: 457 TV---------IDATGNAQGAPQLVTATDSAPQAPEGGRLKRVPIARIFKNEDFGYTTIT 507

Query: 536 VKESIKSNEAK-TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP 594
           V+  +K       L +K  +       +A   +D    P+    GE+             
Sbjct: 508 VERPLKDEAGNVVLGLKGKQKGKPQPDSAL--RDTENVPLDQDIGEY------------- 552

Query: 595 YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654
                   F REV PH PDA++        D+E  +VGYEI FNR FY ++P R L  ID
Sbjct: 553 --------FAREVLPHAPDAWV--------DQEKSKVGYEIPFNRHFYVFEPPRSLHAID 596

Query: 655 AELKGVEAQIATLLEEMA 672
            ELK V A I  +L E+A
Sbjct: 597 EELKAVTASIMKMLGELA 614


>gi|309390281|gb|ADO78161.1| N-6 DNA methylase [Halanaerobium praevalens DSM 2228]
          Length = 698

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 246/728 (33%), Positives = 379/728 (52%), Gaps = 85/728 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M  F        NFIW  A  L G +K   +G +ILP ++LRR +C LEPT+  V EK  
Sbjct: 1   MNNFGEK----VNFIWNIANLLRGPYKPEKYGDIILPLSVLRRFDCILEPTKDKVLEKAK 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
                    E     AG  F+N S+Y    L     N   NL +YI  FS N + I E+F
Sbjct: 57  QVEI----PELLNAAAGLKFHNKSKYDFEKLLDDPDNIAENLRAYIRGFSANIREIMENF 112

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF   I +L    LL+ + K F+ ++LHP+ V ++ M  I+E LIRRF    +  A D  
Sbjct: 113 DFDKEITKLNSNNLLFLVVKEFNKLDLHPEKVSNQEMGYIFEELIRRFSE--NAEAGDHY 170

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   ++   ++ +   +P  I T+ D  CGTGG L+ A N++       ++  
Sbjct: 171 TPREVIELMVNIIFSGEEDVVT-NPANISTIGDFACGTGGMLSVAENYIHKMNKEAEV-- 227

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQE+  +++A+C A MLI+        + + NI  G++L+ DL  G R  Y L N
Sbjct: 228 --ALYGQEINDQSYAICKADMLIK-----DEGENADNIALGNSLTNDLHKGLRVRYGLMN 280

Query: 299 PPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG  W KD   V+KEHKN G  GRFG G P+ SDGS+LFL H+ +K++     G R A
Sbjct: 281 PPFGVSWSKDSKEVKKEHKNQGFDGRFGAGTPRTSDGSLLFLQHMLSKMKTDKK-GSRMA 339

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+ + SPLF G A SGESEIRRW++ENDL+E I+ALP +LF+ T IATY+W+LSNRK ++
Sbjct: 340 IIFNGSPLFTGDANSGESEIRRWIIENDLLEGIIALPEELFYNTGIATYIWVLSNRKNDD 399

Query: 418 ------RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                 R+ K+QL++AT     +R   GKKR  I   Q  +I +IY + ++ ++S++ D 
Sbjct: 400 LAKGPIRKDKIQLVDATSFSEPMRKSLGKKRNKITKPQINRITEIYGAFQDNEYSQIFDK 459

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL--------------------SPL 510
             FGY ++++ RPL+++F + +  +  + A+ T+ KL                       
Sbjct: 460 EEFGYLKVRIERPLKLNFKITEDRIENIYAENTFSKLFDEEKYKKLKKLSEAPEFKSKDK 519

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK-------ASKSFIVAFINA 563
           ++   L+  K +  +I     A     +  K+ +     +K         +S + A  N 
Sbjct: 520 NKLEKLEAGKKLQDKILNRLRANIEQDKVWKNRKEFKEVLKEILGDLDLKRSLMKAVRNG 579

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYENVPY------------------LESIQDYFVR 605
             ++D  AD      G+   DT+L +YE + +                   ++IQ YF  
Sbjct: 580 LAKRDETADYC-KKRGKIESDTDLRDYERILFSHKVEGYKQDYSDFVEKEKDNIQTYFEE 638

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV PHVP+A++D  +         RVGYEI F R+FY+++       I  +++ +EA+I 
Sbjct: 639 EVKPHVPEAWVDYSY--------TRVGYEIPFTRYFYEFEELEPSHKIKEDIEKLEAEIN 690

Query: 666 TLLEEMAT 673
            +++++  
Sbjct: 691 EIMQKVLG 698


>gi|167771154|ref|ZP_02443207.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM
           17241]
 gi|167666824|gb|EDS10954.1| hypothetical protein ANACOL_02509 [Anaerotruncus colihominis DSM
           17241]
          Length = 671

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 216/708 (30%), Positives = 345/708 (48%), Gaps = 76/708 (10%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M         + NFIW  A+D L   +    +  VILP T++RRL+  L+ T+  V +  
Sbjct: 1   MIMDNQIHNQIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLQDTKQQVMDMK 60

Query: 60  LAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKA 113
                + I    ++    AG +F NTS + L  L         + +  +Y+  FS N + 
Sbjct: 61  AKLDAAGITNQTDALCVAAGQAFCNTSPFRLRDLTARAKQQQLKADFIAYLDGFSPNVQE 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF----------------SGIELHPDTVPDRVMSN 157
           I + F F + I  + +A +L  + + F                S  E+    + +  M  
Sbjct: 121 ILQKFQFRNQIDTMIEADILGAVIEKFVSKEINLSPNPVYTDDSKTEIKLPGLDNHAMGT 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E LIR+F    +E A +  TPRDVV L   L+  P     K+      + YD  CGTG
Sbjct: 181 IFEELIRKFNEANNEEAGEHYTPRDVVELMADLIFVPIKDQIKD---ATYSCYDGACGTG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G LT A + + +          +   GQE++PET+A+C A ML++          +++I 
Sbjct: 238 GMLTVAQDRLLELAEETGKQVSIHLFGQEVQPETYAICKADMLLKG-----DGKQAEHIS 292

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------GL 328
            GSTLS D    ++F + LSNPP+GK W+ D + +  + K+    RF            +
Sbjct: 293 YGSTLSMDGNAARQFDFMLSNPPYGKTWKVDAEKMGGK-KDILDSRFNAYLEDGTQLAMI 351

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P++SDG +LFL++ A K++     G R A V + S LF G AGSGES  RR+L+E+DL+E
Sbjct: 352 PRVSDGQLLFLLNNAAKMKTDTPLGSRIAEVHNGSSLFTGDAGSGESNARRYLIESDLVE 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           A++ALP  +F+ T I TY+W+LSN+K E R+GK+QLI+AT + +++R N G+K   +  +
Sbjct: 412 AVIALPEKMFYNTGIGTYIWVLSNKKEERRKGKIQLIDATTMKSTLRKNMGEKNCELTPE 471

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            R +I+ I++  E    SR+ D R F Y  I V RPLR+    D+T         T++K 
Sbjct: 472 LRDEIMRIFMEMEESSVSRVFDNREFAYWSITVERPLRLRVYPDRT-----IPADTFKKA 526

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             L Q      ++ +        W                   K   + +         K
Sbjct: 527 EELEQ--VQKAIRSVPAGTPTDDWTVFAEAT------------KLKAAALKKIRPFITEK 572

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           DP A P+        PDT+L + E +P+     I  +   EV P+ PDA++        D
Sbjct: 573 DPMAQPIDG-----EPDTDLRDTEIIPFTYEGGIDAFMKNEVLPYAPDAWV--------D 619

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ++  ++GYE++F ++FYQ    R +++I A+LK +E++   +L E+  
Sbjct: 620 EKKTQIGYELSFTKYFYQPVQLRSMEEIVADLKKLESETDGILAEILG 667


>gi|297619042|ref|YP_003707147.1| N-6 DNA methylase [Methanococcus voltae A3]
 gi|297378019|gb|ADI36174.1| N-6 DNA methylase [Methanococcus voltae A3]
          Length = 695

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 234/717 (32%), Positives = 359/717 (50%), Gaps = 86/717 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            NFIWK AE L G +K   +G VILP  +LRR +C L   + +V E+        I    
Sbjct: 8   VNFIWKIAELLRGAYKPEKYGDVILPMAVLRRFDCLLADKKESVLERAKETDVEAI---- 63

Query: 72  FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
              VAGY F N S++    L +   N   N + YI  FS N + I + F+F   I +LE+
Sbjct: 64  LNNVAGYEFSNKSKFDFEKLKNDSDNIETNFKDYIKGFSSNIRTIIDKFEFDKEIKKLEE 123

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             LLY + K F+ I+LHP+ V +  M  I+E LIRRF    +  A D  TPR+V+ L   
Sbjct: 124 NNLLYLVVKEFNSIDLHPNVVSNVEMGYIFEELIRRFSE--NAEAGDHYTPREVIELMVN 181

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L+ +  +       G I T+ D  CGTGG L+ A N++        +       GQEL  
Sbjct: 182 LIFNGLEDEI-REEGRIFTVGDFACGTGGMLSVATNYIKKLNPGATVE----LFGQELNN 236

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           +++AVC + MLI+          + NI  G++L+ D    +   + L NPPFG  W+KDK
Sbjct: 237 QSYAVCCSDMLIKG-------QSAGNIAFGNSLTADKHVNRDVQFALMNPPFGVDWKKDK 289

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           DA+++E K    GRFG GLP+ SDGS+LFL H+ +K+      G R AI+ + SPLF G 
Sbjct: 290 DAIDEEAKKEFNGRFGAGLPRTSDGSLLFLQHMVSKMRHDEK-GSRMAIIFNGSPLFTGD 348

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE------RRGKVQ 423
           AGSGESEIRRW++ENDL+E I+ALPTDLF+ T IATY+WI++NRK +       R GK+Q
Sbjct: 349 AGSGESEIRRWIIENDLLEGIIALPTDLFYNTGIATYIWIITNRKNDNILNGPVRSGKIQ 408

Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+AT+ +  +R   G KR  I+D    +I  +Y   +  ++ ++ D + FGY ++ + R
Sbjct: 409 LIDATNFYHKMRKSLGSKRNKISDSDITEITRLYGEFKENEYCKIFDNKDFGYLKVTIER 468

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD------------------------- 517
           PL+++F + +  +  + ++  + KL    +   L+                         
Sbjct: 469 PLKLNFQISEERIENIYSESAFSKLYDEDKVEELELKKQKQIIKAKENTELEKQYVGKSI 528

Query: 518 ---ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
              I+  +   I    +      +   S + K L    SK    A +     +D  AD  
Sbjct: 529 QDNIIDVLKNNIDEKIYKNREEFDKELSKKLKRLD--LSKPVYKAVLMGLSERDETADYC 586

Query: 575 TDVNGEWIPDTNLTEYENVPYLESIQD-------------------YFVREVSPHVPDAY 615
                +   D++L + E +P    +++                   Y   EV PHV + +
Sbjct: 587 YKGKSK-EADSDLRDTEMIPLSMDVEEYNKKDSSKHIAKEKENILNYLEAEVKPHVNEYW 645

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           ID         +  ++GYEI F R FY+++  R   +I  E++ +E +I T ++++ 
Sbjct: 646 IDD--------KKTKIGYEIPFTRHFYKFEELRPFAEIMKEVEELETEIQTDVKKVF 694


>gi|255308176|ref|ZP_05352347.1| N-6 DNA methylase [Clostridium difficile ATCC 43255]
          Length = 675

 Score =  638 bits (1647), Expect = 0.0,   Method: Composition-based stats.
 Identities = 225/687 (32%), Positives = 370/687 (53%), Gaps = 48/687 (6%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA----VREKYLAFGGSNID 68
            F+W  AE L G +K  D+ KV+LP  ++RR +C L+         V ++Y        D
Sbjct: 11  AFLWNIAESLRGTYKEEDYRKVMLPLIVIRRFDCLLDDYDREIVKSVYKEYDFLPEEEKD 70

Query: 69  LESFVKVA-----GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
               V +         FYN S+++   L   S N ++N E Y+  FS++ K I   F F 
Sbjct: 71  ELVIVDLKENHNIDLQFYNVSDFTWKKLLDDSENIKSNFEEYLNGFSNSVKEIIGKFKFK 130

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             IA+L+K   LY +      ++LH ++V +  M  IYE ++RRF    +  A +  TPR
Sbjct: 131 DEIAQLDKKDKLYAVLSKMYEVDLHINSVSNNEMGYIYEEMLRRFTENSA--AGEQYTPR 188

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   +L    +       G + ++ D  CGTGG L+ A ++V        +     
Sbjct: 189 EVIRLCMEMLFMGKENFLT-EEGKVISIADFCCGTGGMLSIAEDYVEKVNPSAIVN---- 243

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL  E+ A+C A M+++    D       NI+ G+TL++D F+G++  + +SNPPF
Sbjct: 244 VYGQELLDESFAICQADMIMKGQNPD-------NIRLGNTLTQDRFSGEKIRFLISNPPF 296

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G  W+ ++  V++E   G  GRFG G P++SDGS+LFL ++ +K+      G R AI+ +
Sbjct: 297 GVTWKDEEKKVKEEADLGFDGRFGAGTPRVSDGSLLFLQNMISKMYDD-EEGSRIAIIFN 355

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGES IR+W++E DL+E I+ALPTD+F+ T IATY+W+L+N+K ++R+GK
Sbjct: 356 GSPLFTGDAGSGESNIRKWIIEKDLLEGIIALPTDMFYNTGIATYIWVLTNKKEDKRKGK 415

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +QL+NA++ +  +R   G KR+ I+ +Q  +I +IY   E  + S++ D   FGYR++ +
Sbjct: 416 IQLVNASEYYQLMRKSLGNKRKEISLEQIEEIKEIYERFEESENSKIFDNEGFGYRKVTI 475

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLH--------------QSFWLDILKPMMQQI 526
            RPL++SF +++  +  ++    +  LS                 +     +LK +    
Sbjct: 476 ERPLKLSFRVNEEAIENVKNTTQFINLSVSKKKDEEVKVKEEAEGRVKQDKLLKLLESFD 535

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTN 586
             + + +         +++K   V  S   I A +NA G ++  A    D  G    D++
Sbjct: 536 SEFEYMKRDKFIKDLKSKSKLYDVALSAGLIKAIVNAIGVRNEDAVVCKDAKGNIESDSS 595

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + E++   E + +YF +EV PHV DAYID+  ID        +GYEI F R+FY+Y+ 
Sbjct: 596 LKDTESIALKEDVYEYFEKEVKPHVEDAYIDESSIDN-------IGYEIPFTRYFYKYEK 648

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673
            +   DI  E++ +E++IA  + ++  
Sbjct: 649 LKSFDDIMKEVESLESEIALEIRKVLG 675


>gi|289523864|ref|ZP_06440718.1| type I restriction-modification system, M subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502520|gb|EFD23684.1| type I restriction-modification system, M subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 701

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 226/723 (31%), Positives = 353/723 (48%), Gaps = 102/723 (14%)

Query: 2   TEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           T        + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV +   
Sbjct: 26  TMEVSQLTWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKRAVLDLKA 85

Query: 61  AFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAI 114
           +   + I     +  + AG +FYNTS ++L  L +  +R     +  +Y+  FS N + I
Sbjct: 86  SLDKAGIVHQDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEI 145

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYE 160
            ++F+F + I RL KA  L  + + F    ++                   +  M  I+E
Sbjct: 146 IDNFEFRNQIPRLTKADALGTLIEKFLDPSINLSPYPVLDSAGSVRLPGLDNHAMGTIFE 205

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+RRF  E +E A +  TPRD V L   L+ +P     +        LYD  CGTGG L
Sbjct: 206 ELVRRFNEENNEEAGEHWTPRDAVRLMARLIFEPIADQIESG---TYLLYDGACGTGGML 262

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG- 279
           T A   +            +   GQE+  ET+A+C + +L++        + + NI  G 
Sbjct: 263 TVAEETLLQLAKERGKQVSMHLFGQEINAETYAICKSDLLLKG-----EGEAADNIVGGP 317

Query: 280 --STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LP 329
             STLS D F G+ F + LSNPP+GK W+ D + +  +    +  RF           + 
Sbjct: 318 EHSTLSNDAFPGREFDFMLSNPPYGKSWKSDLERMGGK-SGIKDPRFVVQHRGEELSLIT 376

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + SDG MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EA
Sbjct: 377 RSSDGQMLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEA 436

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQ 448
           IVALP ++F+ T IATY+W+L+NRK E R+G+VQLI+AT  +  +R N GKK   ++++ 
Sbjct: 437 IVALPLNMFYNTGIATYVWVLTNRKPEHRKGRVQLIDATQWYKPLRKNLGKKNCELSEED 496

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            R++LD ++  E  + S++     FGY ++ V RPLR+   +D       +     R+ +
Sbjct: 497 IRRVLDTFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKG-IDPERTYTPKEIKALRETA 555

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                   +   P++++I+  G A   ++   +   A   +V                  
Sbjct: 556 ER-----AEDAPPVIKKIHKPGTAPDPLRGLFEMVIAGKPRV------------------ 592

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLE------------------SIQDYFVREVSPH 610
                      E+ PD  L + E +P+LE                  +I+ +  REV P+
Sbjct: 593 ----------VEYEPDKELRDSEQIPFLECQACHQPGYLPSPEDQRTAIEAFLRREVLPY 642

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           VPDA+ D   +        +VGYEINFNR+FY+ +  R L++I A+L  VE +   LL E
Sbjct: 643 VPDAWYDPASV--------KVGYEINFNRYFYKPKALRPLEEIRADLLTVEREAEGLLAE 694

Query: 671 MAT 673
           +  
Sbjct: 695 ILG 697


>gi|292490879|ref|YP_003526318.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
 gi|291579474|gb|ADE13931.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
          Length = 799

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 223/802 (27%), Positives = 355/802 (44%), Gaps = 156/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT++AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKAAVLEEVRFQRKEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + ++  +    +GY FYN S+++L  L  T T        N+E Y++ +S N K I  
Sbjct: 66  KLTELEDSALQAASGYVFYNASKWTLKQLYQTATNNQQILLANVEEYLSGYSGNVKEIIG 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLI 163
            F+  + +  +    +L  + + F+   ++                  +  M  ++E LI
Sbjct: 126 KFNLKAQVRHMAAKDVLLDVLEKFTSPYINLTHEEAQDPEGNRLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           RRF  E +E A +  TPR+V+ L T L+ DP           + T+YDP CG+GG LT++
Sbjct: 186 RRFNEENNEEAGEHFTPREVIELMTHLVFDPVKDKL----PPVMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + D     +    +  +G+E+  ET+A+C + M+I+            NI+ GSTLS
Sbjct: 242 QNFIKDEEGAIRASGDVYLYGKEINDETYAICKSDMMIKGNNP-------ANIRVGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PK 330
            D F G RF + LSNPP+GK W  ++  ++   +     RF   L             P+
Sbjct: 295 TDEFAGNRFDFMLSNPPYGKSWAGEQKYIKDGGE-VIDPRFKVQLKDYWGHVETVDAAPR 353

Query: 331 ISDGSMLFLMHLANKLELPPNGG--GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + +K++ P  GG   R A V + S LF G AGSGES IRR ++ENDL+E
Sbjct: 354 SSDGQLLFLMEMISKMKAPQAGGLGSRIASVHNGSSLFTGDAGSGESNIRRHIIENDLLE 413

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ LP +LF+ T I TY+W+LSN K E RRGK QLI+A+ L+  +R N G K      +
Sbjct: 414 AIIQLPNNLFYNTGITTYIWLLSNHKPEHRRGKAQLIDASRLYRKLRKNLGNKNCEFAPE 473

Query: 448 QRRQILDIYV--------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
             R+I   Y+        +   G  +++ D R FGY ++ + RP R         +  L 
Sbjct: 474 HIREITQTYLELASIDRPAGAEGIAAQVFDNRDFGYYKVAIERPDRRKAQFSTERIETLR 533

Query: 500 ADITW--------------------------------------------RKLSPLH---- 511
            D                                               +KL  L     
Sbjct: 534 FDKALGEPMAWIYGQWGDRVYEKGTLAEHEKAILAWCEEQALNLNAKQRKKLLNLETWRK 593

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL----KVKASKSFIVAFINAFGRK 567
               + + + +M  I    + +    ++      K L     VK   S     +NA  + 
Sbjct: 594 HHTLVQMAEHLMAVIGTDEFNDFNRFKTRVDKALKALAKETGVKLGVSDKNQLLNAVSKY 653

Query: 568 DPRADPVTDVNGE------------------------------------WIPDTNLTEYE 591
           D  A+ V     +                                    +   ++L + E
Sbjct: 654 DENAEKVIKKVEKFSQDQLRTLLQRLGCEESELADFGYYATEKPDEYLTYESSSDLRDSE 713

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
            +P  + I  YF  EV PHV +A+I+   +        ++GYEI+FN++FY++QP R ++
Sbjct: 714 TIPLKDDIHQYFKAEVKPHVSEAWINMDSV--------KIGYEISFNKYFYRHQPLRSME 765

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  E+  +E Q   L+ ++  
Sbjct: 766 EVAREIIALEQQAEGLIADILG 787


>gi|258513231|ref|YP_003189487.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635134|dbj|BAI01108.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638189|dbj|BAI04156.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641243|dbj|BAI07203.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644298|dbj|BAI10251.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647353|dbj|BAI13299.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650406|dbj|BAI16345.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653397|dbj|BAI19329.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656450|dbj|BAI22375.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 797

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 225/805 (27%), Positives = 360/805 (44%), Gaps = 155/805 (19%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK---- 58
              S +SL +FIW+ A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+    
Sbjct: 2   NQTSHSSLVSFIWRIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKDAVLEEVRYQ 61

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAK 112
               G + +D E     +GY F+NTS ++L  L +T T        N+E Y+  FSDN K
Sbjct: 62  KEDIGVTELDDEPLKDASGYVFFNTSHWTLKKLYNTATNNQQILLANIEDYLDGFSDNVK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNF---------SGIELHPDTV----PDRVMSNIY 159
            I   F+    +  + +  +L  + + F         + IE           +  M  ++
Sbjct: 122 EIIGRFNLFEQMRHMAEKQVLLDVIEKFVSPWVNLTPNDIEDPEGNTLPGLSNLGMGYVF 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LIR+F  E +E A +  TPR+V+HL T L+ DP           I T+YDP CG+GG 
Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIHLMTHLVFDPIKDRL----PQILTIYDPACGSGGM 237

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT+A N++ D          +  +G+E+  ET+A+C + M+I+           +NI+ G
Sbjct: 238 LTEAQNYITDADGPFHAHGDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIRIG 290

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP------------- 326
           STLS D F+  RF + LSNPP+GK W  +   ++   K     RF               
Sbjct: 291 STLSTDEFSAHRFDFMLSNPPYGKSWNSEVKYIKD-GKGVIDPRFQVKLADYWGNVETMD 349

Query: 327 GLPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+++EN
Sbjct: 350 ATPRSSDGQLLFLMEMISKMKPTSASPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIEN 409

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D+++ I+ LP +LF+ T I TY+W+LSN K E RRG+VQLI+A  ++  +R N G K   
Sbjct: 410 DMLDTIIQLPNNLFYNTGITTYIWLLSNAKPEARRGRVQLIDANLMFRKLRKNLGDKNCE 469

Query: 444 INDDQRRQILDIYVSRE------------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D+  +QI + +++               G   ++ D   FGY ++ + RP R      
Sbjct: 470 FSDEHIQQITEAFLNFAPVERQIDAAGDPEGIAVQVFDNADFGYHKVTIERPDRRRAAFS 529

Query: 492 KTGLARLEADITWRK------------------------------------LSPLHQSFW 515
              LA L  D + R+                                    L+   ++  
Sbjct: 530 AERLAPLRFDKSLREPMEWLYDEHGDQVYQPGFLKEQAKQITAWCEEAGLTLNAKAKAKL 589

Query: 516 LD------------ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
           LD                +M  +      +      + +   K  K+K   +   A +NA
Sbjct: 590 LDTRYWVKLRDLLATATQIMGDVGLEETDDFNAFRKVVNAAIKARKIKLGVTEKNAILNA 649

Query: 564 FGRKDPRADPVTDVNGE-----------------------------------WIPDTNLT 588
               D  A  V     +                                   +     L 
Sbjct: 650 VSWYDETAQKVIAKKHKLTGAEVEELTTHLGCAAEDLADFGWYRQKDGSYLTYESTAELR 709

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
           + E+V   ++I  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY+++P R
Sbjct: 710 DAESVALKDNIHRYFLAEVKPHVEEAWINLDSV--------KIGYEISFNKYFYRHKPLR 761

Query: 649 KLQDIDAELKGVEAQIATLLEEMAT 673
            L+++  ++  +E +   L+ ++  
Sbjct: 762 SLEEVTQDILALEEKADGLIADILG 786


>gi|259156577|gb|ACV96520.1| N-6 DNA methylase [Vibrio fluvialis Ind1]
          Length = 809

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 226/816 (27%), Positives = 359/816 (43%), Gaps = 172/816 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYNTS+++L +L +T T        N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  S I  +    +L  + + F    ++                  +  M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F   RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I + Y++ E+ +             S++     FGY ++ + RP R      +  +
Sbjct: 472 HITEITETYLACEDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531

Query: 496 ARLEADI---------------------------------------------------TW 504
           A L  D                                                      
Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSDKKKSFLKSIEKDILSWCEDNDISLNAK 591

Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            K   L    WL      +  + +M  I    + +    ++      K   +K S     
Sbjct: 592 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 651

Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580
           A +NA    D  A                         V D                 GE
Sbjct: 652 AILNAVSWYDETAKKVVKKVVKLSGEKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGE 711

Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              +  +++L + E+VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI+F
Sbjct: 712 YITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--------KIGYEISF 763

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           N++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 764 NKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 799


>gi|113477872|ref|YP_723933.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
 gi|110168920|gb|ABG53460.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
          Length = 677

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 216/671 (32%), Positives = 333/671 (49%), Gaps = 59/671 (8%)

Query: 11  LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-D 68
           + +FIW  A+D L   +    +  VILP T++RRL+C LEPT++AV ++   +    I D
Sbjct: 9   IVSFIWGIADDVLRDIYVRGKYRDVILPMTVIRRLDCLLEPTKAAVLKENNFYENMEISD 68

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                +   Y FYNTS ++L  L     + + NL  Y+  FSDN + I   F F + +  
Sbjct: 69  KSGLTEFTKYPFYNTSGFTLKKLLDEPRSIKENLIDYLNGFSDNVQEIINKFKFRNQLET 128

Query: 127 LEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRFGSEVSE 172
           L +   LY + + F+  +++                 + +  M  ++E LIR+F  E +E
Sbjct: 129 LVEHKRLYALIQKFTDSDINLSPEPRKDKKGKVIQPGLSNLGMGYVFEELIRKFNEENNE 188

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPRD++ L   L+  P     K +      +YD  CG+GG LT+A N + +  +
Sbjct: 189 EAGEHFTPRDIIKLMVNLIFMPVKDQIKNT---TYLVYDCACGSGGMLTEAENFLLELAT 245

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                 ++   GQE+ PET+A+C A MLI+  E+D       NI+  STL+ D F    F
Sbjct: 246 GMGKKVVIHLFGQEVNPETYAICQADMLIKVKETD-------NIKYASTLASDGFPDFTF 298

Query: 293 HYCLSNPPFGKKWEKDKDAV-EKEHKNGELGRFGPG--------LPKISDGSMLFLMHLA 343
            + L+NPP+GK W+ D+D +     K  +  RF           +P+ SDG +LFL++  
Sbjct: 299 DFMLANPPYGKSWKVDQDKILVGRKKEVKDNRFLVKHQGEELQLIPRSSDGQLLFLVNKL 358

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +K++     G R AIV + S LF G AGSGES IRRW++END +E IV LP ++F+ T I
Sbjct: 359 SKMKDSTKLGSRIAIVHNGSALFTGDAGSGESNIRRWIIENDWLECIVGLPLNMFYNTGI 418

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG 462
           ATY+WI+SN+K+ ERRGKVQLI+  + +  +R   G K   +  +   +I + ++     
Sbjct: 419 ATYIWIISNKKSVERRGKVQLIDGREWYGKLRKSLGSKSCELRGEDIDRITEEFLDFSES 478

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
             SR+ D   FG+ +I V RPLR SF +    +      +             L ++  +
Sbjct: 479 DNSRIFDNEDFGFHKIVVERPLRFSFQVTAARVQEFGEKMG---------DDLLGVVDIL 529

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE-- 580
                     +  + +       K       K  +      F  KD R + V     +  
Sbjct: 530 RGLFGEEVQWDFNLVKRDFEKALKVEGWNLKKRDLDLIYQIFTEKDERGEAVILKQTKKG 589

Query: 581 --WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
             +  D  L + ENVP  E+IQ+YF REV PHV DA+ID   +          GYEI+F 
Sbjct: 590 VVYQADAELRDTENVPLKENIQEYFEREVLPHVSDAWIDFDKVVR--------GYEISFT 641

Query: 639 RFFYQYQPSRK 649
           ++FY++Q  R 
Sbjct: 642 KYFYKFQKLRS 652


>gi|295135946|ref|YP_003586622.1| DNA methylase HsdM [Zunongwangia profunda SM-A87]
 gi|294983961|gb|ADF54426.1| putative DNA methylase HsdM [Zunongwangia profunda SM-A87]
          Length = 784

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 234/801 (29%), Positives = 370/801 (46%), Gaps = 151/801 (18%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT+   S + L  FIW  A+D L   +    +  VILP  +LRRL+  LEP++  V ++ 
Sbjct: 1   MTQN--SHSKLIAFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPSKKEVMDEV 58

Query: 60  L----AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109
                  G + ++ E     AGY FYNTS+++L  L  T +        N E YI  FSD
Sbjct: 59  QFQTVEAGFTELESEGLKTAAGYEFYNTSKWTLQLLKDTASNNQSILLANFEDYILGFSD 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--------PDTV-----PDRVMS 156
           N K I   F+    I  +    +L  + + F+   ++        PD        +  M 
Sbjct: 119 NVKEIISKFNLVRQIKHMATKDVLLDVLEKFTSPRINLTPFEKEDPDGYKLPALSNLGMG 178

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIR+F  E +E A +  TPR+V+ L T L+ +P           + T+YDP CG+
Sbjct: 179 YVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFEPVKHQL----PPVMTIYDPACGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT++ N + D     +    +   G+E+  ET+A+C + M+I+  +        +NI
Sbjct: 235 GGMLTESQNFIKDEAGAIQAKGDVYLFGKEINDETYAICKSDMMIKGNDP-------QNI 287

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------- 326
           + GSTLS D F+ K F + LSNPP+GK W  ++  ++   K+    RF            
Sbjct: 288 RLGSTLSTDEFSRKNFDFMLSNPPYGKSWASEQKYIKD-GKDIIDPRFTIQLSNYWQETD 346

Query: 327 ---GLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
               +P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+L
Sbjct: 347 TEKAIPRSSDGQLLFLMEMVSKMKNLKQSPLGSRIASVHNGSSLFTGDAGSGESNIRRYL 406

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKK 440
           +ENDL+EAIV LP +LF+ T I TY+W+LSN KT+ER+GKVQLI+A  L+  +R N G+K
Sbjct: 407 IENDLLEAIVQLPNNLFYNTGITTYIWLLSNNKTKERQGKVQLIDAQPLYQKLRKNLGQK 466

Query: 441 RRIINDDQRRQILDIYVS-----RENGKF--SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
                 +   +I   +++     RE      S++ +   FGY ++ + RP R+       
Sbjct: 467 NCEFTPEHITEITQTFLNSEAREREEDDQLASKIFNNTDFGYYKVTIERPKRLRSQFTLE 526

Query: 494 GLARLEADITWR----------------------------------------------KL 507
            +  L      +                                              K 
Sbjct: 527 AIESLRYYSQLQEPMEYAYKTFGKKVYTELPSIKTEILNWCEANDISLSSKKKAQLTAKK 586

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
           +     F +D    + + I    + +        +   K L++K S +   A ++A    
Sbjct: 587 TWEDAKFLVDTATKLYEAIGDAVFMDFNHFSKQVNKALKKLEIKLSNAQKKAILDAVSVY 646

Query: 568 DPRADPVTDV----NGE--------------------------------WIPDTNLTEYE 591
           DP A+ V        GE                                +  +++L +YE
Sbjct: 647 DPEAEKVIKTTKILKGEKLENLCAHLDCTPDQLSHFGYFPSGNKGTYTIYESESDLRDYE 706

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           NVP  E++ DYF+REVS HV +A+ID            ++GYEI+FN++FYQ++  R L 
Sbjct: 707 NVPLDETVYDYFLREVSTHVEEAWIDLDK--------TKIGYEISFNKYFYQHKALRPLD 758

Query: 652 DIDAELKGVEAQIATLLEEMA 672
           +ID +++ +E +   L+ ++ 
Sbjct: 759 EIDKDIRELETKSEGLIMDIL 779


>gi|300825350|ref|ZP_07105429.1| N-6 DNA Methylase [Escherichia coli MS 119-7]
 gi|300522185|gb|EFK43254.1| N-6 DNA Methylase [Escherichia coli MS 119-7]
          Length = 819

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 226/816 (27%), Positives = 358/816 (43%), Gaps = 172/816 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 18  HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 77

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYNTS+++L +L +T T        N E Y+  FSDN K I E
Sbjct: 78  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 137

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  S I  +    +L  + + F    ++                  +  M  ++E LI
Sbjct: 138 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETIEDPDGNKMPALTNLGMGYVFEELI 197

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 198 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKEQL----PLTMTVYDPACGSGGMLTES 253

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 254 QNFIEEKYPND--SRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 304

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F   RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 305 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 363

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 364 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 423

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 424 AIVQLPNNLFYNTGITTYIWVLSNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 483

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y++  + +             S++     FGY ++ + RP R      +  +
Sbjct: 484 HITEITDTYLACVDVERALDANNDPIGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAI 543

Query: 496 ARLEADI---------------------------------------------------TW 504
           A L  D                                                      
Sbjct: 544 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSDQKKSFLKSIEKDILSWCEDNDISLNAK 603

Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            K   L    WL      +  + +M  I    + +    ++      K   +K S     
Sbjct: 604 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 663

Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580
           A ++A    D  A                         V D                 GE
Sbjct: 664 AILHAVSWYDETAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYPVPSAEGGKKGE 723

Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              +  +++L + E+VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI+F
Sbjct: 724 YITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--------KIGYEISF 775

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           N++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 776 NKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 811


>gi|158337899|ref|YP_001519075.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
 gi|158308140|gb|ABW29757.1| type I restriction-modification system, M subunit, putative
           [Acaryochloris marina MBIC11017]
          Length = 807

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 231/819 (28%), Positives = 364/819 (44%), Gaps = 169/819 (20%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
              S   L +FIW  A+D L   +    +  VILP  +LRRL+C LE T+ AV E+    
Sbjct: 2   DAASQNKLISFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLEETKDAVMEEVRFQ 61

Query: 60  -LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAK 112
             + G + ++  +    +GY FYNTS+++L  L  T          N ++Y+  FS+N K
Sbjct: 62  RESVGLTELESGALKDASGYVFYNTSDWTLKRLVETASNNRQILEANFKAYLDGFSENVK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-------------PDTVPDRVMSNIY 159
            I + F     I R+ +A +L  + + F+   ++                + +  M  ++
Sbjct: 122 EIIDSFYLRDQIKRMVQADVLLDVLEKFTSPYINFSPTQGEDPDGRKLAGLSNLGMGYVF 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LIR+F  E +E A +  TPR+V+ L T LL  P           +  +YD  CG+GG 
Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIKLMTHLLFMPVKEQL----PPVMLIYDGACGSGGM 237

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT++ N ++D     K    +  +G+E+ PET+ +C + M+I+        +  +NI+ G
Sbjct: 238 LTESQNFISDPEGGIKSDAQVYLYGKEVNPETYGICKSDMMIKG-------NSPENIKLG 290

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-------------GP 326
           STL+ D F G RF + L NPP+GK +  D+  +    K+    RF               
Sbjct: 291 STLAMDEFAGMRFDFMLENPPYGKSYAADQKHILD-GKDVLDERFLLPLKDFWDEESLEK 349

Query: 327 GLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+++EN
Sbjct: 350 ATPRSSDGQLLFLMDMVSKMKPLDQSPAGSRIASVHNGSSLFTGDAGSGESNIRRYIIEN 409

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D +EAIV LP ++F+ T I+TY+W+LSN K  ER+GKVQLI+ ++L+  +R N G K   
Sbjct: 410 DWLEAIVQLPQNMFYNTGISTYVWVLSNNKAPERQGKVQLIDRSELYRKLRKNLGAKNCE 469

Query: 444 INDDQRRQILDIYVSREN--------------GKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
              +Q  +I  +Y+ R +                 S++ D + FG+ ++ V RPLR+   
Sbjct: 470 FAPEQIEKITHLYLDRVHQPTLPPSEDRELPPPPISKVFDNQDFGFYKVTVERPLRLLAQ 529

Query: 490 LDKTGLARL---------------------------------------EADITWRKLSPL 510
                +A L                                       E  +T +    L
Sbjct: 530 FTPERVATLRYVPVLAEVMEWAYGEWGDEIYTSLTDHKQKIEEYLEKEEISLTAKNRKAL 589

Query: 511 -------HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT----LKVKASKSFIVA 559
                  +Q   + + + +M  +    W +        ++  KT    L  K S S    
Sbjct: 590 FTAKTWENQRDLMQVAEQLMASVEQEVWHDFNDFAERVNDTLKTLARQLDSKLSASEKRQ 649

Query: 560 FINAFGRKDPRADPVTDV----NG--------------------------------EWIP 583
             NA   +D  A  V        G                                E+  
Sbjct: 650 IFNAVSWRDEAAARVIKKVHKLKGEKLAELLEHLGTTEEHLADFGYWPGETAGQWIEYET 709

Query: 584 DTNLTEYENVPYLES---------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
           D+ L + E+VP             I  YF+ EV PHV DA+I             ++GYE
Sbjct: 710 DSELRDTESVPLNYGQALERGTAQIHGYFLAEVRPHVEDAWIALD--------STKIGYE 761

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           INFN++FYQ++P RKL+ +  E+  +E +   LL+ + +
Sbjct: 762 INFNKYFYQHKPLRKLETVVEEILELEKKTEGLLKRLVS 800


>gi|238920395|ref|YP_002933910.1| hypothetical protein NT01EI_2505 [Edwardsiella ictaluri 93-146]
 gi|238869964|gb|ACR69675.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 802

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 222/809 (27%), Positives = 352/809 (43%), Gaps = 163/809 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRFQQQEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYN S+++L +L +  T        N+  Y+  FSDN   I  
Sbjct: 66  NAVELDEEPLKAASGYVFYNISKWTLKSLLNAATNNQQILLANVNEYLNGFSDNVTEIVN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  + I  +    +L  + + F    ++                  +  M  ++E LI
Sbjct: 126 CFNLRAQIRHMADKQVLLDVIEKFVSPYINLTPNDIEDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDQL----PLTMTIYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A+      +   +  +G+E+  ET+A+C + M+IR  +         NI+ GSTLS
Sbjct: 242 QGFIAEKYPATGVSRDIYLYGKEINDETYAICKSDMMIRGNDP-------ANIKVGSTLS 294

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------------GL 328
            D F+  RF + LSNPP+GK W  ++  ++  ++     RF                   
Sbjct: 295 TDEFSHMRFDFMLSNPPYGKSWASEQKHIKDGNE-VIDSRFKVKLADYWGVVAPKDCDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P     G R A V + S LF G AGSGES IRR+L+END+
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPSVSPLGSRIASVHNGSSLFTGDAGSGESNIRRYLIENDM 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+L+N K   R+GKVQLI+A+ L+  +R N G+K   ++
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLNNHKPASRQGKVQLIDASLLYRKLRKNLGEKNCELS 473

Query: 446 DDQRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I    ++  N +             S++     FGY ++ V RP R        
Sbjct: 474 PEHIEEITQTCLACANVERQLDSNNDPVGIASKVFKNEDFGYYKVTVERPDRRKAQFSSE 533

Query: 494 GLARLEADITW----------------------------------------RKLSPLHQS 513
            L  L  D +                                          K     QS
Sbjct: 534 RLNALRFDKSLHEVMAHCFAEYGEQVYQEGGLTRHSKPILEWCEKNEISLNNKAKEKLQS 593

Query: 514 --------FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
                      D    +M++I    + +    ++      K  K+K S +   A  NA  
Sbjct: 594 STFWCAARTLFDTAHTLMREIGEAEFNDFNRFKAQVEATLKAQKLKLSVTEKNALFNAVS 653

Query: 566 RKDPRA--------------------------------------DPVTDVNGE---WIPD 584
             D  A                                             GE   +   
Sbjct: 654 WYDETAAKVVKKVVKLSADKLGELLELYSCEEADLPDFGYYPYPPEQGGKKGEFVTYESS 713

Query: 585 TNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           ++L + E+VP  +SI  YF+ EV PHV +A+++         E  ++GYE++FN++FY++
Sbjct: 714 SDLRDSESVPLTQSIYQYFLDEVKPHVAEAWLN--------MESVKIGYEVSFNKYFYRH 765

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +  R L+ +  E+  +E Q   L+ ++  
Sbjct: 766 KSLRSLETVAQEILTLEQQADGLIAQILG 794


>gi|259910158|ref|YP_002650514.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96]
 gi|224965780|emb|CAX57312.1| putative DNA methylase [Erwinia pyrifoliae Ep1/96]
 gi|283480263|emb|CAY76179.1| type I restriction-modification system DNA methylase [Erwinia
           pyrifoliae DSM 12163]
          Length = 793

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 219/802 (27%), Positives = 354/802 (44%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP + AV  +        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVKFQKEEL 65

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D    +  +GY FYNTS+++L+ L    T        N E Y+  FSDN K I  
Sbjct: 66  RATELDDAPLMAASGYVFYNTSKWTLNLLFKAATNNQQILLANFEEYLLGFSDNVKEIVA 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIE-------------LHPDTVPDRVMSNIYEHLI 163
            F+  + I  +    +L  + + F                      + +  M  ++E LI
Sbjct: 126 CFNLQAQIRHMASKQVLLDVVEKFVSPYINLTHKAVEDPEGYTMPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLVFDPVKDKL----PLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N +            +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFIEAKYPS--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F  +RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 293 TDEFAAERFDFMLSNPPYGKSWASEQKYIKD-GGDVIDPRFKVRLQDYSGKEETVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + +K++ P   + G R A V + S LF G AG GES IRR+L+END+++
Sbjct: 352 SSDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K ++R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I   Y++    +             S++     FGY ++ V RP R      +  +
Sbjct: 472 HIAEIAQTYLACAGVERKLDANHDAVGIASKVFSNDDFGYYKVTVERPDRRKARFTREAI 531

Query: 496 ARLEADITWRK------------------------------------LSPLHQSFWLDI- 518
             L  D    +                                    L+   +S  LD+ 
Sbjct: 532 QPLRFDKQLAEVMAWLYGEHGDKIYEKGFLASVEKATLAWCAERDISLNTKAKSKLLDVK 591

Query: 519 -----------LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
                       + +M  +    + +  + ++      K  K+K S +   A +NA    
Sbjct: 592 NWLSLQRVYHTAERLMATLGGGEFDDFNLFKAQVEQVLKAEKIKLSAAEKNAIVNAVSWY 651

Query: 568 DPRADPVTD---------------------------------VNGEW-IPDT--NLTEYE 591
           D  A  V +                                    E+ I D+  +L + E
Sbjct: 652 DETAARVINKTVKLNGDKLQDLLARLECEAEDLPDFGFYPSGKKDEYIIYDSSADLRDTE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY  +P R L+
Sbjct: 712 SVPLKQSIYQYFLDEVKPHVAEAWINLDSV--------KIGYEISFNKYFYHPKPLRSLE 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  ++  +E Q   L+ ++  
Sbjct: 764 EVAQDIIKLEQQSEGLIAQILG 785


>gi|188535438|ref|YP_001909235.1| type I restriction-modification system, methyltransferase subunit
           [Erwinia tasmaniensis Et1/99]
 gi|188030480|emb|CAO98374.1| type I restriction-modification system, methyltransferase subunit
           [Erwinia tasmaniensis Et1/99]
          Length = 793

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 219/802 (27%), Positives = 360/802 (44%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP + AV  +        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPGKEAVLAEVRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
             + +D    +  +GY FYNTS+++L++L  T T +      N E Y+  FSDN K I  
Sbjct: 66  QATELDDAPLMAASGYVFYNTSKWTLNSLFKTATNSQQILLANFEEYLLGFSDNVKEIVA 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIE-------------LHPDTVPDRVMSNIYEHLI 163
            F+  + I  +    +L  + + F                      + +  M  ++E LI
Sbjct: 126 CFNLQAQIRHMAAKQVLLDVVEKFVSPYINLTHKAVDDPDGYSMPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIDLMTHLVFDPVKDKL----PLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N +            +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFIEAKYPS--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F  +RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 293 TDEFAAQRFDFMLSNPPYGKSWATEQKYIKD-GGDVIDPRFKVKLRDYFGKEETVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + +K++ P   + G R A V + S LF G AG GES IRR+L+END+++
Sbjct: 352 SSDGQLLFLMEMVSKMKDPAIGSLGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K+++R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKSQDRQGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I   Y++    +             S++     FGY ++ + RP R      +  +
Sbjct: 472 HIAEIAQTYLACTGAERALDANHDAVGIASKVFSNDDFGYYKVTIERPDRRKARFSREAI 531

Query: 496 ARLEADITWRK------------------------------------LSPLHQSFWLDI- 518
             L  D    +                                    L+   +S  LD+ 
Sbjct: 532 RPLRFDKQLAEVMAWLYAEHGDKVYEKGFLASVEKDTQGWCAERDISLNTKARSKLLDVK 591

Query: 519 -----------LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
                       + +M  I    + +    ++      K  K+K S +   A +NA    
Sbjct: 592 NWLSLQTVYHCAERLMATIGGEEFDDFNRFKAQVEQVLKAEKIKLSAAEKNAILNAVSWY 651

Query: 568 DPRADPVTD---------------------------------VNGEWI-PDT--NLTEYE 591
           D  A  V +                                    E+I  D+  +L + E
Sbjct: 652 DESAAKVINKTVKLNGDKLQDLLERLECEAADLPDFGFYPSGKKDEYITYDSSADLRDTE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           ++P  +SI  YF+ EV PHV +A+I+   +        ++GYEI+FN++FY+++P R L+
Sbjct: 712 SIPLKQSIYQYFLDEVKPHVAEAWINLDSV--------KIGYEISFNKYFYRHKPLRSLE 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  ++  +E Q   L+ ++  
Sbjct: 764 EVAQDIIKLEQQSEGLIAQILG 785


>gi|282600127|ref|ZP_05973122.2| type I restriction-modification system, M subunit [Providencia
           rustigianii DSM 4541]
 gi|282566525|gb|EFB72060.1| type I restriction-modification system, M subunit [Providencia
           rustigianii DSM 4541]
          Length = 821

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 226/816 (27%), Positives = 357/816 (43%), Gaps = 172/816 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 18  HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 77

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYNTS+++L +L +T T        N E Y+  FSDN K I E
Sbjct: 78  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 137

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  S I  +    +L  + + F    ++                  +  M  ++E LI
Sbjct: 138 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETAEDPDGNKMPALTNLGMGYVFEELI 197

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 198 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 253

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 254 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 304

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F   RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 305 TDEFAASRFDFMLSNPPYGKSWASEQKYIKD-GSDVIDPRFKVSLKDYWGNFEVVDATPR 363

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 364 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 423

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 424 AIVQLPNNLFYNTGITTYIWVLNNNKPEVRKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 483

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y++ ++ +             S++     FGY ++ + RP R      +  +
Sbjct: 484 HITEITDTYLACKDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRKAKFTQDAI 543

Query: 496 ARLEAD---------------------------------------------------ITW 504
           A L  D                                                      
Sbjct: 544 APLRFDRQLSEVMEYVYAEHGERVYEKTGYGSDQKKSFLKSIEKDILSWCEENDISLNAK 603

Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            K   L    WL      +  + +M  I    + +    ++      K   +K S     
Sbjct: 604 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKNHAIKLSAPEKN 663

Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580
           A +NA    D  A                         V D                 GE
Sbjct: 664 AILNAVSWYDETAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGYYPLPATEGGKKGE 723

Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              +  +++L + E+VP  +SI  YF  EV PHV +A+I+   +        ++GYEI+F
Sbjct: 724 YITYETNSDLRDTESVPLKQSIYQYFKGEVKPHVDEAWINLDTV--------KIGYEISF 775

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           N++FY ++P R L+++  ++  +E +   L+ ++  
Sbjct: 776 NKYFYMHKPLRSLEEVATDIINLEQKSEGLIAQILG 811


>gi|120597917|ref|YP_962491.1| N-6 DNA methylase [Shewanella sp. W3-18-1]
 gi|120558010|gb|ABM23937.1| N-6 DNA methylase [Shewanella sp. W3-18-1]
          Length = 807

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 226/816 (27%), Positives = 356/816 (43%), Gaps = 172/816 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYNTS+++L +L +T T        N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  S I  +    +L  + + F    ++                  +  M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F   RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K       
Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPA 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y++    +             S++     FGY ++ + RP R      +  +
Sbjct: 472 HITEITDTYLACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531

Query: 496 ARLEADI---------------------------------------------------TW 504
           A L  D                                                      
Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGTEKKKSFLKSIEKDILSWCEDNDISLNAK 591

Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            K   L    WL      +  + +M  I    + +    ++      K   +K S     
Sbjct: 592 AKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 651

Query: 559 AFINAFGRKDPRAD-----------------------PVTD---------------VNGE 580
           A +NA    D  A                         V D                 GE
Sbjct: 652 AILNAVSWYDETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGE 711

Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              +  +++L + E+VP  +SI  YF+ EV PHV +A+I+   +        ++GYEI+F
Sbjct: 712 FITYETNSDLRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTV--------KIGYEISF 763

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           N++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 764 NKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILG 799


>gi|259156157|gb|ACV96105.1| N-6 DNA methylase [Providencia alcalifaciens Ban1]
          Length = 809

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 227/816 (27%), Positives = 358/816 (43%), Gaps = 172/816 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYNTS+++L +L +T T        N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  S I  +    +L  + + F    ++                  +  M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +   +      +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFIEEKYPND--SRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F   RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 293 TDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K      +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPE 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I D Y++ E+ +             S++     FGY ++ + RP R      +  +
Sbjct: 472 HITEITDTYLACEDVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAI 531

Query: 496 ARLEADI---------------------------------------------------TW 504
           A L  D                                                      
Sbjct: 532 APLRFDKQLSEVMEYVYAEHGERVYEKTGYGSEKKKSFLKSVEKDILSWCEENDISLNAK 591

Query: 505 RKLSPLHQSFWL------DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            K   L    WL      +  + +M  I    + +    ++      K   +K S     
Sbjct: 592 AKAKLLDVKHWLALKALLETAQTLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKN 651

Query: 559 AFINAFGRKDPRA------------DPVTD--------------------------VNGE 580
           A +NA    D  A            D +TD                            GE
Sbjct: 652 AILNAVSWYDETAKKVVKKVVKLSSDKLTDLLERYECEVADLPDFGYYPVPATEGGKKGE 711

Query: 581 ---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
              +   ++L + E+VP  +SI  YF+ EV PH+ +A+I+   +        ++GYEI+F
Sbjct: 712 YITYETSSDLRDTESVPLKQSIHQYFLDEVKPHIDEAWINLDTV--------KIGYEISF 763

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           N++FY ++P R L+++  ++  +E +   L+  +  
Sbjct: 764 NKYFYLHKPLRSLEEVATDIINLEQKAEGLISLILG 799


>gi|163754486|ref|ZP_02161608.1| restriction/modification methyltransferase [Kordia algicida OT-1]
 gi|161325427|gb|EDP96754.1| restriction/modification methyltransferase [Kordia algicida OT-1]
          Length = 737

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 239/758 (31%), Positives = 360/758 (47%), Gaps = 109/758 (14%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M         + +FIW  A+D L  DF    +  +ILPFT+LRRL+  L PT+  V + Y
Sbjct: 1   MNNKV--HNQIVSFIWSIADDVLRDDFVRGKYRDIILPFTVLRRLDALLVPTKEDVLKGY 58

Query: 60  LAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTL--------------GSTNTRNNLESYI 104
                + ID        +GY F+NTS ++ S                   N  +NLE Y+
Sbjct: 59  KFLKENKIDDLSGLTHQSGYPFFNTSGFTFSNSSLFDSNHPYTALTNDPANIDSNLEEYL 118

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP------------- 151
             FS+N + I + F+    + +L++ GL   + +  +  E++   V              
Sbjct: 119 DGFSENIQQIIDRFEIRKQLPKLKENGLTPLLIEKLASKEINLSPVEIKNTKGEVLPPLT 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  M  ++E LIR+F  E +E A +  TPR+++ L T L+  P     K +     ++YD
Sbjct: 179 NLGMGYVFEELIRKFNEENNEEAGEHFTPREIIQLMTHLIFLPIKDKLKVAQ---YSIYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+GG LT+A  +      +         +GQE+ PET AVC + MLI+  +      
Sbjct: 236 SACGSGGMLTEAEKYAKRITKN---KTSFSLYGQEVNPETWAVCNSDMLIKGEKDY---- 288

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE----HKNGELGRFGPG 327
              +I  GSTLS D F  K F + LSNPP+GK W+KD+D++  E    ++  +  RF  G
Sbjct: 289 ---HIAYGSTLSNDSFQFKEFDFMLSNPPYGKAWKKDEDSIVIERGKTNELIKDPRFQTG 345

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LPKISDG +LFL ++ +K++     G R A V + S LF G AG GESEIRR+L+E+DL+
Sbjct: 346 LPKISDGQLLFLSNMVHKMKKGTELGSRIASVHNGSSLFTGNAGQGESEIRRYLIESDLV 405

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIIND 446
           E IVALP  +F+ T I TY+WILSNRK + R+GK+QLINA +L T + RN G+K   +  
Sbjct: 406 ECIVALPEKIFYNTGIPTYIWILSNRKEKRRQGKIQLINALELSTPLRRNLGEKNCEMQP 465

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE------- 499
              +QI D+Y++ +    S++ D   FGY  + + RPLR         +  L        
Sbjct: 466 SHIKQIEDLYLNFKETNISKVFDNEDFGYYDVTIERPLRYKSQFTNEAIENLRYLNTIAD 525

Query: 500 ----------------------------------------ADITWRKLSPLHQSFWLDIL 519
                                                       +   +   Q   + I 
Sbjct: 526 EMKWMYAQFGDNLYEGISKEIKQKTELWLKDEDIKISTANKKKLFNNATWKTQKELMRIA 585

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG 579
           K +   I    +    +         KTL  K S +     + A   KD  A+PV     
Sbjct: 586 KDIFSNIGDKLFDNFNLFNKEVDKVLKTLSYKVSATNKKKVLLAVSWKDEEAEPVIKKKA 645

Query: 580 E-----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYE 634
           +     +  D++L + E VP  E+I+DYF REV P+VPDA+I+   I +        GY 
Sbjct: 646 KDGTIIYEADSDLRDTEIVPLNENIEDYFNREVIPYVPDAWINYDKITK--------GYM 697

Query: 635 INFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           I+F R+FY Y P + L+ I  E+  +E +   +LEE+ 
Sbjct: 698 ISFTRYFYNYSPPKDLELIKQEILDLEKETEGILEEII 735


>gi|229520260|ref|ZP_04409686.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80]
 gi|167832524|gb|ACA01834.1| DNA methylase HsdM [Vibrio cholerae]
 gi|229342626|gb|EEO07618.1| hypothetical protein VIF_000776 [Vibrio cholerae TM 11079-80]
          Length = 793

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 219/802 (27%), Positives = 362/802 (45%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D       +GY FYNTS+++L TL ST T        N E Y+  FS+N K I E
Sbjct: 66  NEIELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-------------TVPDRVMSNIYEHLI 163
            F+  + I  +    +L  + + F    ++                + +  M  ++E LI
Sbjct: 126 CFNLKAQIRHMAGKNVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT+ 
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDNL----PLSITVYDPACGSGGMLTET 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V +          +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFVEEKYPA--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F+  RF + LSNPP+GK W  ++  + KE K    GRF                +P+
Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351

Query: 331 ISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++       G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRYIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I+  Y+  ++ +             +++   + FGY ++ + RP R +       +
Sbjct: 472 HIAEIVSTYLENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRADLI 531

Query: 496 ARLEADITWRKLSP---------------------------------------------- 509
             L  + + R++                                                
Sbjct: 532 EPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDISLNKAAKTKLLDTK 591

Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             + Q   ++    + ++I    + +    + +   E  +L +K S     A ++A    
Sbjct: 592 NWMKQRTLVNAASQLHKKIGDEVYNDFNQFKQLVDAELTSLGLKLSAPEKKAILDAVSWY 651

Query: 568 DPRADPVTDV------------------------------NGE------WIPDTNLTEYE 591
           D  A+ V                                  G       +   ++L + E
Sbjct: 652 DENAEKVIKKVAKLKQDKLDDLLENYECELEDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+++         E  ++GYEI+FN++FY+++P R + 
Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRHKPLRSMD 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  E+  +E +   L+ ++  
Sbjct: 764 EVAKEIIALEQKAEGLIADILG 785


>gi|15641772|ref|NP_231404.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121585796|ref|ZP_01675590.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80]
 gi|121727690|ref|ZP_01680785.1| DNA methylase HsdM, putative [Vibrio cholerae V52]
 gi|147674983|ref|YP_001217310.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|153817851|ref|ZP_01970518.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457]
 gi|153821147|ref|ZP_01973814.1| DNA methylase HsdM, putative [Vibrio cholerae B33]
 gi|227081914|ref|YP_002810465.1| putative DNA methylase HsdM [Vibrio cholerae M66-2]
 gi|229508128|ref|ZP_04397633.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286]
 gi|229511633|ref|ZP_04401112.1| hypothetical protein VCE_003042 [Vibrio cholerae B33]
 gi|229518772|ref|ZP_04408215.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9]
 gi|229607689|ref|YP_002878337.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236]
 gi|255744816|ref|ZP_05418766.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholera CIRS 101]
 gi|262161901|ref|ZP_06030919.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae INDRE 91/1]
 gi|262169769|ref|ZP_06037460.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae RC27]
 gi|298498161|ref|ZP_07007968.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656291|gb|AAF94918.1| DNA methylase HsdM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549934|gb|EAX59952.1| DNA methylase HsdM, putative [Vibrio cholerae 2740-80]
 gi|121629987|gb|EAX62395.1| DNA methylase HsdM, putative [Vibrio cholerae V52]
 gi|126511671|gb|EAZ74265.1| DNA methylase HsdM, putative [Vibrio cholerae NCTC 8457]
 gi|126521343|gb|EAZ78566.1| DNA methylase HsdM, putative [Vibrio cholerae B33]
 gi|146316866|gb|ABQ21405.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|227009802|gb|ACP06014.1| putative DNA methylase HsdM [Vibrio cholerae M66-2]
 gi|227013669|gb|ACP09879.1| putative DNA methylase HsdM [Vibrio cholerae O395]
 gi|229343461|gb|EEO08436.1| hypothetical protein VCC_002797 [Vibrio cholerae RC9]
 gi|229351598|gb|EEO16539.1| hypothetical protein VCE_003042 [Vibrio cholerae B33]
 gi|229355633|gb|EEO20554.1| hypothetical protein VCF_003362 [Vibrio cholerae BX 330286]
 gi|229370344|gb|ACQ60767.1| hypothetical protein VCD_002601 [Vibrio cholerae MJ-1236]
 gi|255737287|gb|EET92682.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholera CIRS 101]
 gi|262022003|gb|EEY40713.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae RC27]
 gi|262028633|gb|EEY47288.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae INDRE 91/1]
 gi|297542494|gb|EFH78544.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 793

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 219/802 (27%), Positives = 363/802 (45%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D       +GY FYNTS+++L TL ST T        N E Y+  FS+N K I E
Sbjct: 66  NEIELDDAPLCATSGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSENVKEIVE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-------------TVPDRVMSNIYEHLI 163
            F+  + I  +    +L  + + F    ++                + +  M  ++E LI
Sbjct: 126 CFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPAVKEDPEGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT+ 
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDNL----PLSITVYDPACGSGGMLTET 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V +          +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFVEEKYPA--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F+  RF + LSNPP+GK W  ++  + KE K    GRF                +P+
Sbjct: 293 TDEFSSNRFDFMLSNPPYGKSWASEQKHI-KEGKEVVDGRFKVKLKDYWGVESEQEAIPR 351

Query: 331 ISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++       G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQDSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPENRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I+  Y+  ++ +             +++   + FGY ++ + RP R +       +
Sbjct: 472 HIAEIVSTYLENQSVERAIDEKGDPVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRADLI 531

Query: 496 ARLEADITWRKLSP---------------------------------------------- 509
             L  + + R++                                                
Sbjct: 532 EPLRFENSQREVMEYLYAEYGEQVYDAGFVKGIEKEITKWCEENDISLNKAAKTKLLDTK 591

Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             + Q   +++   + ++I    + +    + +   E  +L +K S     A ++A    
Sbjct: 592 NWIKQRTLVNVASQLHKKIGDEVYNDFNQFKQLVDAELTSLGLKLSAPEKKAILDAVSWY 651

Query: 568 DPRADPVTDV------------------------------NGE------WIPDTNLTEYE 591
           D  A+ V                                  G       +   ++L + E
Sbjct: 652 DENAEKVIKKVAKLKQDKLDELLENYECELQDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+I+         E  ++GYEI+FN++FY+++P R + 
Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWINL--------ESVKIGYEISFNKYFYRHKPLRSMD 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  ++  +E +   L+ ++  
Sbjct: 764 EVAGDIIALEQKAEGLIADILG 785


>gi|187779697|ref|ZP_02996170.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC
           15579]
 gi|187773322|gb|EDU37124.1| hypothetical protein CLOSPO_03293 [Clostridium sporogenes ATCC
           15579]
          Length = 704

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 217/723 (30%), Positives = 345/723 (47%), Gaps = 80/723 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV +       + I
Sbjct: 3   NQIVNFIWSIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEPTKEAVLQMKKKLDKAGI 62

Query: 68  --DLESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +   VAG +F NTS + L  L         + +  +Y+  FS N + I E F F 
Sbjct: 63  VNQTSALCSVAGQAFCNTSPFMLKDLKSRVKQQQLKLDFITYLDGFSPNVQEILEKFKFR 122

Query: 122 STIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRFG 167
           + I  + +A +L  + + F    ++                 + +  M +I+E LI +F 
Sbjct: 123 NQIDTMIEADILGSVIEKFVDPRINLSVEPVLDDNGEVKLPALENHTMGSIFEELIHKFN 182

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E +E A +  TPR VV L   +   P     K+       +YD  CGTGG LT A   +
Sbjct: 183 EENNEQAGEHFTPRHVVELMADITFLPVVDKIKDG---SYLVYDGACGTGGMLTIAEKRL 239

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +     +  +GQE+ PET+A+  A ML++          + NI  GSTLS D F
Sbjct: 240 QELAKENNKQISINLYGQEINPETYAITKADMLLKG-----EGKQADNIAYGSTLSNDKF 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------GLPKISDGSMLF 338
           +   F + LSNPP+GK W+ D + +  + ++    RF            +P+ SDG +LF
Sbjct: 295 STTNFDFMLSNPPYGKSWKTDLNKLGGK-EHITDPRFAVTHNNESDFKMIPRSSDGQLLF 353

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L +  +K++     G R   V + S LF G AG GES +RR+++END +EAI+ALP ++F
Sbjct: 354 LANKISKMKQNTELGSRIVEVHNGSSLFTGDAGQGESNLRRYIIENDWLEAIIALPENMF 413

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYV 457
           + T IAT++W+++NRK + R GKVQLI+ATDL + +R N+G K   +  + R+ I DI +
Sbjct: 414 YNTGIATFIWVVANRKPKHRMGKVQLIDATDLKSPLRKNQGNKNCELTPEIRKVITDILI 473

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           + E    S++ D + FGY +I V +PLR+S  L K  +         +K + L     +D
Sbjct: 474 NFEENDKSKIFDNKEFGYWKITVEKPLRLSVDLSKENIEEFSKICEEQKDTEL-----MD 528

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           I+  +  +          +        A  L +K S   +    N   + D  A+ V   
Sbjct: 529 IIYTLGDKFQHKKLTNYNLFLDELKKIASNLNIKLSSKRLKLVKNNLAKVDEVAEKVIKR 588

Query: 578 -------------------------NGEWIPDTNLTEYENVPY--LESIQDYFVREVSPH 610
                                      E+  D+NL + E +P      I+ +F  EV P 
Sbjct: 589 IIKPGKVEKNPLYGLFNENIEDEYHIVEYEADSNLRDTEEIPLLHEGGIEKFFKDEVLPF 648

Query: 611 VPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
             DA+I        DK   ++GY+I+F+++FY+    R L +I A++K +E++   LL E
Sbjct: 649 NKDAWI--------DKSKTQIGYKISFSKYFYKPIKLRDLNEIKADIKILESETDGLLNE 700

Query: 671 MAT 673
           +  
Sbjct: 701 IIG 703


>gi|298529186|ref|ZP_07016589.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510622|gb|EFI34525.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 786

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 234/786 (29%), Positives = 358/786 (45%), Gaps = 145/786 (18%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             G    +ANFIW  A+D L   +    +  VILP T++RRL+  LEPT+  V +     
Sbjct: 2   ENGQLNWIANFIWNIADDVLRDVYVRGKYRDVILPMTVIRRLDACLEPTKQDVLKMSEQL 61

Query: 63  GGSNI--DLESFVKVAG----YSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAK 112
             + +   + +  + AG    ++FYN S ++L  L     +   + + E+Y+  FS N +
Sbjct: 62  DKAGVANKVGALSRAAGADANHAFYNDSPFTLRDLQSRGKAQQLKADFETYLDGFSPNVQ 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNI 158
            I E F F + I  L  A  L  + + F    I L P              + +  M  I
Sbjct: 122 EILEKFKFRNQIPTLVDADALGPLIEKFLNPDINLCPHPVRDVEGNVRLPGLDNHAMGTI 181

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E LIRRF  E +E A +  TPRDVV L   L+  P     +        +YD  CGTGG
Sbjct: 182 FEELIRRFNEENNEEAGEHFTPRDVVKLMANLIFWPIADDIR---SATYRVYDGACGTGG 238

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT A + +    S       +   GQE+ PET+A+  A +L++          ++N++ 
Sbjct: 239 MLTVAEDTLQGLASSRGKNVSIHLFGQEVNPETYAISKADLLLKG-----EGQGAENMKF 293

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPK 330
           GSTLS+D F    F + LSNPP+GK W+ D D +  + K+    RF           + +
Sbjct: 294 GSTLSRDAFPSGEFDFMLSNPPYGKSWKMDLDRMGGK-KDMSDHRFVVQHDGDELSLITR 352

Query: 331 ISDGSMLFLMHLANKLELPPN---GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            SDG +LFL++   K+  P      G R A V + S LF G AGSGES IRRW++END +
Sbjct: 353 SSDGQLLFLVNKLTKMVEPTERSPLGSRIAEVHNGSSLFTGDAGSGESNIRRWIIENDWL 412

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           EAI+ALP ++F+ T IATY+W+L+N K EER+GKVQLI+ATD++  +R N G K   +++
Sbjct: 413 EAIIALPLNMFYNTGIATYIWVLTNAKPEERKGKVQLIDATDIYQPLRKNMGAKNCELSE 472

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           +Q +QI +++++ E  + S++     FGY +I+V RPLR+   L +  +  L        
Sbjct: 473 EQIKQICEMFLAFEETEQSKIFPNAAFGYWKIRVERPLRLHSQLTRKAIQGLRYASGDED 532

Query: 507 LSPLHQSFWLDIL--------KPMMQQIYPYG------------------------WAES 534
           +       + D +        K + Q ++ +G                          + 
Sbjct: 533 IRQALHEEFGDTIFENFSSVRKQVEQTLHDWGGNGDEDSDGDEDSDTPKRTVIPEKKRKK 592

Query: 535 FVKESIKSNEAK--------------------------------TLKVKASKSFIVAFIN 562
            +K      + K                                 L +K S        N
Sbjct: 593 LLKADTWKRDKKLYDAARALRDELGEDVFTNHNIFRDAVADGLKKLGIKLSAGEQKIIFN 652

Query: 563 AFGRKDPRADPVTDV------------NG-------------EWIPDTNLTEYENVPYLE 597
           A   +   A PV               +G             E+ PD+ L + E VP LE
Sbjct: 653 AMSWRVEDAPPVIKKAHKPGKAEVDPLHGLYANPEGDPGLVLEYEPDSELRDSEQVPLLE 712

Query: 598 --SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
              I+ +F REV PHVP A+I        D+   ++GYEI+F R FY+    R L++I  
Sbjct: 713 EGGIEAFFRREVLPHVPGAWI--------DESATKIGYEISFTRHFYKPPELRPLEEIKV 764

Query: 656 ELKGVE 661
           +L  ++
Sbjct: 765 DLLALQ 770


>gi|254228172|ref|ZP_04921601.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio sp. Ex25]
 gi|262394005|ref|YP_003285859.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. Ex25]
 gi|151939245|gb|EDN58074.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio sp. Ex25]
 gi|262337599|gb|ACY51394.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. Ex25]
          Length = 794

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 217/802 (27%), Positives = 366/802 (45%), Gaps = 158/802 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKEAVLEEVRFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D       +GY FYNTS+++L TL ST T        N E Y+  FSDN K I E
Sbjct: 66  NETELDDAPLCAASGYVFYNTSKWTLQTLFSTATNNQQILLANFEDYLNGFSDNVKEIVE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD-------------TVPDRVMSNIYEHLI 163
            F+  + I  +    +L  + + F    ++                + +  M  ++E LI
Sbjct: 126 CFNLKAQIRHMAGKDVLLDVVEKFVSPYINLTPTVKEDPEGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT+ 
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDEL----PLSITVYDPACGSGGMLTET 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V +          +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFVEEKYPA--SNRDIYLYGKEINDETYAICKSDMMIKGNNP-------QNIRVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPK 330
            D F+ +RF + LSNPP+GK W  ++  ++   K+   GRF                +P+
Sbjct: 293 TDEFSSERFDFMLSNPPYGKSWASEQKHIKD-GKDVVDGRFKVKLKDYWGVESEQDAIPR 351

Query: 331 ISDGSMLFLMHLANKLELP--PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM +  K++ P     G R A V + S LF G AGSGES IRR+++END+++
Sbjct: 352 SSDGQLLFLMEMVTKMKSPQVSPLGSRIASVHNGSSLFTGDAGSGESNIRRFIIENDMLD 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    + +
Sbjct: 412 AIVQLPNNLFYNTGITTYIWLLNNNKPESRQGKVQLIDASLLFRKLRKNLGNKNCEFSPE 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              +I+  Y+  ++ +             +++   + FGY ++ + RP R +       +
Sbjct: 472 HIAKIVSTYLDNKSVERAIDEKGDSVGIAAQVFKNQDFGYYKVNIERPDRRNAQFRSDLI 531

Query: 496 ARLEADITWRKLSP---------------------------------------------- 509
             L  + + R++                                                
Sbjct: 532 EPLRFEKSLREVMEYLYVEYGEKVYDAGFVKGVEKEITKWCEENDISLNKAAKTKLLDTK 591

Query: 510 --LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
             + Q   ++    +  +I    + +    + +   E K+L +K + +   A ++A    
Sbjct: 592 NWIKQRTLVNAASQLHSKIGDEVYNDFNQFKQLVDAELKSLGLKLAATEKKAILDAVSWY 651

Query: 568 DPRADPVTDV------------------------------NGE------WIPDTNLTEYE 591
           +  A+ V                                  G       +   ++L + E
Sbjct: 652 NENAEKVIKKVAKLKQDKLDELLESYECELQDLPDFGYYPTGNHNEFVTYESSSDLRDSE 711

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           +VP  +SI  YF+ EV PHV +A+++         E  ++GYEI+FN++FY+++P R + 
Sbjct: 712 SVPLEQSIYQYFLDEVKPHVDEAWVNL--------ESVKIGYEISFNKYFYRHKPLRSMD 763

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           ++  ++  +E +   L+ ++  
Sbjct: 764 EVAKDIIALEQKAEGLISDILG 785


>gi|145633686|ref|ZP_01789412.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 3655]
 gi|145635503|ref|ZP_01791203.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittAA]
 gi|229845498|ref|ZP_04465627.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 6P18H1]
 gi|144985446|gb|EDJ92267.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 3655]
 gi|145267268|gb|EDK07272.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittAA]
 gi|229811601|gb|EEP47301.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 6P18H1]
          Length = 793

 Score =  628 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 230/805 (28%), Positives = 352/805 (43%), Gaps = 158/805 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ GY FYNTS+++L +L  T +        N E Y+  FS N + I +
Sbjct: 66  AFTELDDLPLKKITGYVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIIK 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F  S  I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPVLTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K     I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKSQIPAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +  L  D                                              K   L 
Sbjct: 534 NIEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       K  K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFDDFNQFKQAVECRLKAGKIPLSATEKKAVFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             +  A  V                                     GE   +   ++L +
Sbjct: 654 WYNENAAKVIAKTLKLKPNELDALCQRYQCQADGLADFGYYATGKAGEYIQYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMATE 674
           L ++  ++  +E Q   L+ E+  E
Sbjct: 766 LAEVAQDILALEKQADGLISEILGE 790


>gi|217979674|ref|YP_002363821.1| N-6 DNA methylase [Methylocella silvestris BL2]
 gi|217505050|gb|ACK52459.1| N-6 DNA methylase [Methylocella silvestris BL2]
          Length = 647

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 219/693 (31%), Positives = 333/693 (48%), Gaps = 86/693 (12%)

Query: 17  KNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI--DLESFV 73
             A+D L   +    +  VILP  +LRRL+  LEPT++AV         + I     +  
Sbjct: 2   GIADDALRDLYVRGKYRDVILPMMVLRRLDAVLEPTKAAVLSMKDNLDKAGITNQDAALR 61

Query: 74  KVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           + AG +FYNTS + L  L +       + + E+++  FS N + I ++F+F + + +L K
Sbjct: 62  QAAGQAFYNTSRFKLRDLRNRASQSQLKADFEAFLDGFSPNVQEILDNFEFRNQLPKLSK 121

Query: 130 AGLLYKICKNF--SGIELHPD------------TVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           A +L  + + F  S I L P              + +  M  I+E L+RRF    +E A 
Sbjct: 122 ADVLGTLIEKFLDSSINLGPKPVLNGDGSVKHPGLDNHAMGTIFEELVRRFNEANNEEAG 181

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPRD V L   L+  P     +        LYD  CGTGG LT A   + +    H 
Sbjct: 182 EHWTPRDAVKLMAKLIFVPIADQIQSG---TYLLYDGACGTGGMLTVAEETLNELAEKHG 238

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRF 292
                   GQE+  ET+A+  A +L++        + + NI  G   STL+ D F  K F
Sbjct: 239 KQVSTHLFGQEINGETYAIAKADLLLKG-----EGEEADNIVGGPEWSTLANDAFPSKEF 293

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---GPG------LPKISDGSMLFLMHLA 343
            + LSNPP+GK W+ D++ +  +       RF     G      + + SDG MLFL ++ 
Sbjct: 294 DFMLSNPPYGKSWKSDQERMGGK-SGMRDPRFVIEHAGDAEYSLVTRSSDGQMLFLANML 352

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +K++     G R A V + S LF G AGSGES +RRW++END  EAIVALP ++F+ T I
Sbjct: 353 SKMKHNTPLGSRIAEVHNGSSLFTGDAGSGESNVRRWIIENDWCEAIVALPLNMFYNTGI 412

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG 462
           ATY+W+LSNRK   RRGKVQLI+AT  +  +R N GKK   + D    +IL  +++ +  
Sbjct: 413 ATYVWVLSNRKPGNRRGKVQLIDATAWFRPLRKNLGKKNCELADADIERILQAFIAFQPT 472

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           + SR+ D   FGY ++ V RPLR   I      A        + L    ++   +   P+
Sbjct: 473 EQSRIFDNAEFGYSKVTVERPLRARGIDTTRAYAP----KEIKALKDDGRTA--EDGAPV 526

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
           +++I+  G  E+     +                                       E+ 
Sbjct: 527 IRRIHKPGKVEADPLRGLFPLTI------------------------DGKRCV---VEYE 559

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD++L + E VP  E   I+ +  REV PH PDA+ID+            +GYE++F R+
Sbjct: 560 PDSDLRDTETVPLKEPGGIEAFIRREVLPHAPDAWIDEAK--------TTIGYEVSFTRY 611

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+ QP R L  I A++  +E +   L+ ++  
Sbjct: 612 FYKPQPLRPLDAIRADILALERETDGLMADIIG 644


>gi|310778851|ref|YP_003967184.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926]
 gi|309748174|gb|ADO82836.1| N-6 DNA methylase [Ilyobacter polytropus DSM 2926]
          Length = 996

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 231/749 (30%), Positives = 363/749 (48%), Gaps = 104/749 (13%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
              + ++IW  A+D L   F    +  VILPFT+LRR++  LE ++  V E    F  +N
Sbjct: 262 HNKIVSYIWSIADDVLRDIFVRGKYRDVILPFTVLRRIDILLEESKEKVLEMNKFFEENN 321

Query: 67  IDLE-SFVKVAGYSFYNTSEYSLST--------------LGSTNTRNNLESYIASFSDNA 111
           I+ +    K+ GY FYNTS +++                       +NLE Y+  FS N 
Sbjct: 322 INDKSGLEKITGYPFYNTSPFTMGKNSLKDSEYPFVSLLSDPDKIDSNLEEYLDGFSPNI 381

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNI 158
           + I   F   + +  ++ AG+ + +    +   ++                  +  M  +
Sbjct: 382 QEIISKFKVRNQLETMQDAGITFGLIDKLTSGSINLSPYEVKNSKGEILPALTNLGMGYV 441

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E LIR+F  E +E A +  TPR+++ L T ++ +P   + KE  G   ++YDP CG+GG
Sbjct: 442 FEELIRKFNEENNEEAGEHFTPREIIKLMTHIIFEPIKDILKEREGARFSIYDPACGSGG 501

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT+A +       +     I    GQE+ PET A+C   MLI+        + + NI  
Sbjct: 502 MLTEAEDFALKITDN---KCIFSLFGQEVNPETWAICTGDMLIKG-------EKASNIGY 551

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH-----KNGELGRFGPGLPKISD 333
           GSTLS D F G +F + LSNPP+GK W+ D DA+ +       +  +  RF  GLP ISD
Sbjct: 552 GSTLSNDEFKGHKFDFILSNPPYGKSWKNDVDAIVENRGKKGKEIIKDPRFKVGLPTISD 611

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL+++ +K++     G R A V + S LF G AG GESEIR+ +LENDL+E I+AL
Sbjct: 612 GQLLFLVNMISKMKNDTELGSRIASVHNGSSLFTGDAGQGESEIRKMILENDLLECIIAL 671

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
            T++F+ T I TY+WILSNRK E R+GKVQLINA D++T +R N G+K   +   Q   I
Sbjct: 672 STNIFYNTGIPTYIWILSNRKEERRKGKVQLINAIDIYTPLRKNLGQKNCELTKTQIDSI 731

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-- 510
             IY+  +  + S++ D   FGY +I V RPLR+   +    +  L  + T    +    
Sbjct: 732 TKIYLDFKKTETSKIFDNEDFGYNKIIVERPLRLKAKITNEAIESLRYEKTIIDEAKWIY 791

Query: 511 --------------------------------------------HQSFWLDILKPMMQQI 526
                                                        Q   + I + ++++I
Sbjct: 792 RKYGDKVYDGLKDVKKDIENWIEKNEIKISPANKKKIFDVNVWKSQEELMKITEQLLEEI 851

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD---VNGE--W 581
               +      + +  +    L +K  K  +    NA   KD   +PV      +G   +
Sbjct: 852 GEIEFDNFNTFKDLIGDTLNKLDIKIGKKDLDLIFNAITWKDEEGEPVIKKVEKDGTIIY 911

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
             D++L + E+VP  E I +YF REV  ++PDA+I        D+   + GY I+F R+F
Sbjct: 912 EADSDLRDSESVPLNEDIHEYFEREVLNYIPDAWI--------DESKTQKGYSISFTRYF 963

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           Y + P R L+ I +E++ ++ +   ++EE
Sbjct: 964 YNFTPPRSLEAIASEIEKLQEETEGIMEE 992


>gi|54308076|ref|YP_129096.1| putative DNA methylase HsdM [Photobacterium profundum SS9]
 gi|46912502|emb|CAG19294.1| putative DNA methylase HsdM [Photobacterium profundum SS9]
          Length = 793

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 224/799 (28%), Positives = 357/799 (44%), Gaps = 161/799 (20%)

Query: 16  WKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAFGGSNIDLE 70
           W  A+D L   +    +  VILP  +LRRL+  LE T+  + E+          +  D  
Sbjct: 4   WSIADDCLRDVYVRGKYRDVILPMVVLRRLDSLLEATKKEILEEVAFQRDEMESTEFDSA 63

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFEDFDFSSTI 124
               + GY FYNTS+++L  + +T +        N+E Y+  FSDN K I + F   S I
Sbjct: 64  PLEAITGYVFYNTSKWTLKQITATASNNQQILLANVEEYLNGFSDNVKEIIKCFKLQSQI 123

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLIRRFGSEVS 171
             + +  +L  + + F+   ++                  +  M  ++E LIR+F  + +
Sbjct: 124 RHMAEKDILLDVLEKFTSPNINLTPNVVEDPDGNKLPALSNLGMGYVFEELIRKFNEDNN 183

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           E A +  TPR+V+ L T L+ DP           + TLYDP CG+GG LT+A N + D  
Sbjct: 184 EEAGEHFTPREVIELMTHLVFDPLKGNL----PPVITLYDPACGSGGMLTEAQNFIKDPE 239

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              K    +   G+E+  ET+A+C + M+I+        D  +NI+ GSTLS D F GK 
Sbjct: 240 GKIKATSDVYLFGKEINDETYAICKSDMMIKG-------DNPENIRVGSTLSTDEFAGKT 292

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPKISDGSMLF 338
           FHYCLSNPP+GK W  ++  ++   K     RF                +P+ SDG +LF
Sbjct: 293 FHYCLSNPPYGKSWASEQKYIKD-GKEVIDSRFKVKLKDYWGVEDTYEAIPRSSDGQLLF 351

Query: 339 LMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LM + +K++   NG  G R A V + S LF G AG GES IRR+++END++EAIV LP +
Sbjct: 352 LMEMVSKMKSVNNGVEGSRIASVHNGSSLFTGDAGGGESNIRRYIIENDMLEAIVQLPNN 411

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           LF+ T I TY+W+LSN K ++R+G+VQLI+A  L+  +R N G K    + +  R+I   
Sbjct: 412 LFYNTGITTYIWLLSNNKLDKRKGQVQLIDANPLYRKLRKNLGDKNCEFSPEHIREITKT 471

Query: 456 YVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           Y+     +             +++ D   FGY ++ +  P R +       +  L  D  
Sbjct: 472 YLDMTKVERTLDEKGDPQGISTKVFDNDDFGYYKVNIECPDRRNAQFSSERIETLRFDKA 531

Query: 504 WRK--------------------------LSPLHQSFW---------------------- 515
            R+                          L+   +                         
Sbjct: 532 LREPMEYIYNTYGEDAYKAEILAKESKAILAWCEEKEISLNTKNRNKLLDVATWTRLGDL 591

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
           +DI   +M+ I    + +    ++    E K+ K+K S     A +NA       A+ V 
Sbjct: 592 IDIANTLMKAIGTDIYNDYNQFKATVDAELKSRKIKLSAPEKNAILNAVSWYHENAEKVI 651

Query: 576 DVN--------------------------------------GE---WIPDTNLTEYENVP 594
                                                    GE   +  +++L + E++P
Sbjct: 652 KKKLKLTGSKLDELLTSCDCDEHELGDFGYYLIAKEDGGKAGEYITYESNSDLRDAESIP 711

Query: 595 YLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDID 654
             +SI  YF+ EV PHV D++I+            ++GYEI+FN+ FYQ++P R + D+ 
Sbjct: 712 LKQSIYQYFLDEVKPHVSDSWINID--------STKIGYEISFNKHFYQHKPLRSIDDVA 763

Query: 655 AELKGVEAQIATLLEEMAT 673
            ++  +E +   L+ E+  
Sbjct: 764 KDIIALEQKAEGLMAEILG 782


>gi|304310801|ref|YP_003810399.1| Type I restriction-modification system DNA methylase [gamma
           proteobacterium HdN1]
 gi|301796534|emb|CBL44743.1| Type I restriction-modification system DNA methylase [gamma
           proteobacterium HdN1]
          Length = 808

 Score =  625 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 222/815 (27%), Positives = 357/815 (43%), Gaps = 169/815 (20%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVRYQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D E   + +GY FYN S+++L++L +T T        N + Y+  FS N + I E
Sbjct: 66  QATELDEEPLKEASGYVFYNVSKWTLTSLHNTATNNRQILLANFDEYLNGFSANVQEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELH--------PDTV-----PDRVMSNIYEHLI 163
            F+  S I  +    +L  + + F   +++        PD        +  M  ++E LI
Sbjct: 126 RFELKSKIQHMANKDVLLDVVEKFISPKINLTPVAAEDPDGYKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDSI----PLTLTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            N + +        K    +  +G+E+  ET+A+C + M+I+           +NI+ GS
Sbjct: 242 QNFIEEKYPADPSAKSQRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGS 294

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------G 327
           TLS D F   RF + LSNPP+GK W  ++  ++    +    RF                
Sbjct: 295 TLSTDEFASLRFDFMLSNPPYGKSWASEQKYIKD-GSDVIDPRFKVKLKDYWGNIEECDA 353

Query: 328 LPKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+++END
Sbjct: 354 TPRSSDGQLLFLMEMVSKMKDPGAGTNGSRIASVHNGSSLFTGDAGGGESNIRRYIIEND 413

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
           +++AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    
Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWLLNNNKPESRKGKVQLIDASLLYRKLRKNLGNKNCEF 473

Query: 445 NDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLRPLRMS 487
             +   QI   Y+     +                  S++     FGY ++ + RP R  
Sbjct: 474 APEHIEQITRAYLDCAAIERELDGSLPEGMGDPIGIASQVFRNEDFGYYKVTIERPDRRK 533

Query: 488 FILDKTGLARLEADITWRKLSP-------------------------------------- 509
                  +A L  D    ++                                        
Sbjct: 534 AQFTAERIAGLRFDKQLSEVMEHLYAEYGDKLYEKGFLKSIEKNILAWCEDNDISLNAKA 593

Query: 510 ----------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
                     L      +  + +M  I    + +  + +       K LKVK S +   A
Sbjct: 594 KTKLLDVKHWLALKAVYETAQALMAAIGKDEFDDFNLFKDQVDAGLKALKVKLSATEKNA 653

Query: 560 FINAFGRKDPRADPVTDVNGE------------------------------------WIP 583
            +NA    D  A  V     +                                    +  
Sbjct: 654 ILNAVSWYDESAAKVIKKVVKLSGDKLDEVLERYGCTQAQLPDFGFYPTNKKNEYITYET 713

Query: 584 DTNLTEYENVPYL-----ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
             +L + E+V  L     +SI  YF+ EV PHV +++I+   +        ++GYEI+FN
Sbjct: 714 SADLRDSESVSLLKDDEPQSIHQYFLDEVKPHVEESWINLDSV--------KIGYEISFN 765

Query: 639 RFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ++FY+++P R L+D+  ++  +E +   L+ ++  
Sbjct: 766 KYFYRHKPLRSLEDVAKDIINLEQKAEGLIAQILG 800


>gi|311694469|gb|ADP97342.1| type I restriction-modification system, methyltransferase subunit
           [marine bacterium HP15]
          Length = 807

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 226/816 (27%), Positives = 356/816 (43%), Gaps = 172/816 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  L PT+ AV E+        
Sbjct: 6   HNKLVSFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLMPTKEAVLEEVRFQKEEM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D       +GY FYN S+++L++L +T T        N E Y+  FS N + I E
Sbjct: 66  DATELDPAPLKAASGYVFYNVSKWTLTSLYNTATNNRQILLANFEEYLKGFSPNVQEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTV-----------PDRVMSNIYEHLI 163
            F+  S I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFELKSKIQHMAHKDVLLDVVEKFVSPKINLTPKDALDPDGYKLPGLSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDDL----PLTLTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N + +          +  +G+E+  ET+A+C + M+I+           +NI+ GSTLS
Sbjct: 242 QNFIEEKYPSD--NRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGSTLS 292

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------PGLPK 330
            D F   RF + LSNPP+GK W  ++  ++    +    RF                 P+
Sbjct: 293 TDEFASDRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKIQLKDYWGNEEDCDATPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFLM + +K++ P  G  G R A V + S LF G AG GES IRR+L+END +E
Sbjct: 352 SSDGQLLFLMEMVSKMKDPATGSKGSRIASVHNGSSLFTGDAGGGESNIRRYLIENDWLE 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AIV LP +LF+ T I TY+W+L+N K   RRGKVQLI+A+ L+  +R N G K      D
Sbjct: 412 AIVQLPNNLFYNTGITTYIWVLNNNKPANRRGKVQLIDASLLYRKLRKNLGNKNCEFAPD 471

Query: 448 QRRQILDIYVSRENGKF------------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
              QI   Y+     +             S++     FGY ++ + RP R      +  +
Sbjct: 472 HIEQITRTYLDCTAIERELDANNDPVGIASQVFRNEDFGYHKVTIERPDRRKAQFSEERI 531

Query: 496 ARLEADITWRK---------------------------------------------LSPL 510
           A L  D    +                                             L+  
Sbjct: 532 AGLRFDKQISEVMEHLYAEHGDKVYDSTGHGKDNKQSFLKSIEKPVMAWCDDNDISLNTK 591

Query: 511 HQSFWLDILK------------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
            ++  LD+ +             +M  I    + +    +     E K  K+K S +   
Sbjct: 592 AKTKLLDVKRWASLKAIYETARELMAAIGQDEFDDFNQFKKQVDTELKARKLKLSATEKN 651

Query: 559 AFINAFGRKDPRADPVT------------------DVNGEWIPD---------------- 584
           A +NA    D  A+ V                   D + E +PD                
Sbjct: 652 AILNAISWYDETAEKVVKKVVKLNGDKLDELLHRYDCSAEQLPDYGLYPTGKANEYITFE 711

Query: 585 --TNLTEYENVPY-----LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINF 637
             ++L + E++        + I  YF+ EV PHV +A+I+            ++GYEI+F
Sbjct: 712 SSSDLRDSESIALLKDGEKQGIHGYFLAEVKPHVEEAWINLD--------STKIGYEISF 763

Query: 638 NRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           N++FY+++P R L+++  ++  +E +   L+ ++  
Sbjct: 764 NKYFYRHKPLRSLEEVAQDIISLEQKAEGLIAQILG 799


>gi|260581979|ref|ZP_05849774.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094869|gb|EEW78762.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 790

 Score =  623 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 228/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +A L  D                                              K   L 
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       K  K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTALKLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             D  A  V                                     GE   +   ++L +
Sbjct: 654 WYDENAAKVIAKTLKLKPNELDALCRRYQCQADELADFGYYATGKAGEYLQYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L D+  ++  +E Q   L+ E+ 
Sbjct: 766 LADVAQDILALEKQTDGLISEIL 788


>gi|225076788|ref|ZP_03719987.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens
           NRL30031/H210]
 gi|224951886|gb|EEG33095.1| hypothetical protein NEIFLAOT_01839 [Neisseria flavescens
           NRL30031/H210]
          Length = 793

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 225/805 (27%), Positives = 351/805 (43%), Gaps = 158/805 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEVRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N + I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSANVQEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPDGNKLPALSNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP     K       T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDP----LKNQIPAAITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         ++   +   G+E+  ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLPESQVERSIFLFGKEINDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G+ F + LSNPP+GK W  D+  ++   K     RF                 
Sbjct: 295 LATDSFQGEHFDFMLSNPPYGKNWSNDQAYIKD-GKEVIDSRFKVSLPDYWGNEETLNAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P  SDG +LFLM + +K++ P +   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PSASDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP  LF+ T+I TY+W+LSN K E R+GKVQLI+A+ L+  +R   G+K     
Sbjct: 414 LEAIVQLPNKLFYNTDITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKKLGEKNCEFA 473

Query: 446 DDQRRQILDIYVSR------ENGKF------SRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+         +G+       S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFSAKARETDGQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAQ 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +A L  D                                              K   L 
Sbjct: 534 NIASLRFDKALFEPMQYLYQQHGEQIYNAEYLAKTEPEISAWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       K  K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTASTLLEHFGSTQFDDFNQFKQAVEGRLKAEKISLSATEKKAIFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             +  A  V                                     GE   +   ++L +
Sbjct: 654 WYNESAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYLQYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMATE 674
           L ++  ++  +E Q   L+ E+  E
Sbjct: 766 LAEVAQDILALEKQADGLISEILGE 790


>gi|309812882|ref|ZP_07706614.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
 gi|308433160|gb|EFP57060.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
          Length = 650

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 226/686 (32%), Positives = 356/686 (51%), Gaps = 74/686 (10%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
             F+WK A+ L G F+  ++G+V+LP  +LRR++  L  T+ AV  K   F         
Sbjct: 11  VAFVWKVADTLRGTFRQHEYGQVMLPLLVLRRMDAVLVDTKPAVLAKAKTFETIAAPQAM 70

Query: 72  -FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              KVAG  FYN S ++ ++L         NL +YI   S +A  + E ++    IAR++
Sbjct: 71  MLKKVAGQRFYNISRFTFTSLLSDDKALAENLSNYIRGLSSDAYVVMEAYNLDDKIARMD 130

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +AG+LY++  +F+ ++L P  V +  M  I+E L+RRF    +E A +  TPR+V+ L  
Sbjct: 131 RAGILYRVLADFADLDLRPSVVSNEAMGYIFEDLLRRFSEMSNETAGEHYTPREVIRLMV 190

Query: 189 ALLLDPDDAL-FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            LL+  +      E+P  +RT+YDP  GTGG L  AM H+       ++      +GQEL
Sbjct: 191 ELLVGGEAHRELVENPLPVRTVYDPAAGTGGMLMTAMEHMRALNPETEVK----VYGQEL 246

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             ET A+  + ++++ ++        K ++ G++L++D F  + F + L+NPP+G  W  
Sbjct: 247 NDETWAIAQSDLMMQDIDP-------KQMRNGNSLTQDAFGAEHFDFILANPPYGVNWAG 299

Query: 308 DKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +++EH K G  GRFG GLP+ SDGS+LFL H+ +K++     G R  IVLS SPLF
Sbjct: 300 YAAPIKEEHAKQGMNGRFGAGLPRSSDGSLLFLQHMLSKMKPT---GSRVGIVLSGSPLF 356

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           +G A SGES IR+W+LEND +E IVALP  +F+ T I+TY+WIL+N K +  RG V+L++
Sbjct: 357 SGAADSGESRIRQWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKADADRGLVKLVD 416

Query: 427 ATDLWTSIRN-EGKKRRIINDDQRRQILDIYV----SRENGKFSRMLDYRTFGYRRIKVL 481
           A  + T +R   G KR+ +  D   +I  +Y       ++    ++L    FG++RI V 
Sbjct: 417 ARAMGTKMRKSLGDKRKELTADAIAEIGRLYGGALDEVDDDARIKVLPREAFGFQRITVE 476

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RP+R  + +    +A                    D+  P++ Q         F  E   
Sbjct: 477 RPMRRRWEVTTEAVA----------------DAPFDVFAPLVGQ--------RFQTEKAL 512

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI-- 599
             EA  +  K + +    F  A    DP A  VT   G+  PD +L + ENVP  +    
Sbjct: 513 LAEADAIT-KLTAAQRKKFATACAVADPDAPIVT-KKGQAEPDPDLRDAENVPLPDGWFS 570

Query: 600 --------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
                         + +   E+ P+VPDA+ID            ++G EI F R FY Y+
Sbjct: 571 LDPDARETALRETAEAHLESEIRPYVPDAWIDHTK--------TKIGVEIPFTRQFYVYE 622

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEM 671
           P R +++I AE++ +E QI   ++++
Sbjct: 623 PPRPVEEIAAEIRDLETQIQGWMKDL 648


>gi|148827246|ref|YP_001291999.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittGG]
 gi|148718488|gb|ABQ99615.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittGG]
          Length = 790

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 227/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNEETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +A L  D                                              K   L 
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGEQIYNAGFLAKTEPEISTWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       K  K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGSTQFDDFNQFKQAVEGRLKAEKIPLSATEKKAIFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             D  A  V                                     GE   +   ++L +
Sbjct: 654 WYDENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYIQYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++  R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKSLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L+++  ++  +E Q   L+ E+ 
Sbjct: 766 LEEVTQDILALEKQADGLISEIL 788


>gi|256826062|ref|YP_003150022.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
 gi|256689455|gb|ACV07257.1| type I restriction-modification system methyltransferase subunit
           [Kytococcus sedentarius DSM 20547]
          Length = 644

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 218/686 (31%), Positives = 344/686 (50%), Gaps = 79/686 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-DLE 70
             F+W+ A+ L G FK  ++G V+LP  +LRR++ AL  T++ V  +   +        +
Sbjct: 10  VAFVWRIADRLRGTFKQHEYGSVMLPLLVLRRMDAALADTKAEVVAQAKGWDTIGPGQDK 69

Query: 71  SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
              + +   FYNTS  + + L   + N R NL  YI   S  A  + E +DF   I R++
Sbjct: 70  LLKRTSRRPFYNTSPLTFAGLLNDADNLRENLAKYIRHLSPEAARVIEAYDFDPKIERMD 129

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  +LY +  +F+ ++L    V +  M  I+E L+R+F    +E A +  TPR+V+ L  
Sbjct: 130 RDDILYGVIADFADLDLRTSVVSNEAMGYIFEELLRKFSEMSNETAGEHYTPREVISLMV 189

Query: 189 ALLLDPD-DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            LLL         E+P  +RT+YDP  GTGG L  A++ V     +      +   GQEL
Sbjct: 190 QLLLTGKTHTELMENPRPVRTVYDPAAGTGGMLVGALDGVQGLNGNA----TVTVSGQEL 245

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             ET A+  + +++  +         + + +G++L++D F  ++F + L+NPP+G  W+K
Sbjct: 246 NDETWAIAQSDLMMLGI-------GPERMARGNSLTQDAFPTEQFDFMLANPPYGVDWKK 298

Query: 308 DKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               ++ E +N G  GRFG G P++SDGS LFL H+ +K++    GG R  IVLS SPLF
Sbjct: 299 YAGPIKDEAENLGFSGRFGAGTPRVSDGSFLFLQHMISKMKP---GGSRIGIVLSGSPLF 355

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           +G+AGSGESEIR W+LEND +E IVALP  +F+ T I+TY+WIL+N K    RGKV+LI+
Sbjct: 356 SGQAGSGESEIRGWILENDWLEGIVALPDQMFYNTGISTYVWILTNDKDGASRGKVRLID 415

Query: 427 ATDLWTSIRN-EGKKRRIINDDQRRQILDIYV----SRENGKFSRMLDYRTFGYRRIKVL 481
           A ++ T +R   G KR+ +  +  R+I ++Y        +    R+++   FGY+RI V 
Sbjct: 416 AREMGTKMRKSLGDKRKELKPEAIREITNLYGGALDEFADDPRVRVMNRNDFGYQRITVE 475

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           RP+R  + +        E                          I          ++++ 
Sbjct: 476 RPMRRHWEVTSELAEAHEG-------------------------IGHLVGRRFETEKALS 510

Query: 542 SNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESI-- 599
           +  A             A +      D  A PV    GE  PD +L + EN+P  +    
Sbjct: 511 NELA-----DLDTKERKAVLKGAAIADEEA-PVILKKGEPAPDPDLRDAENIPLPDGWMD 564

Query: 600 --------------QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
                         + +   E+ P+VPDA++        D    +VGYEI F R FY Y+
Sbjct: 565 LPENRRFSTLDEAAEKHLHTEIHPYVPDAWL--------DYSKTKVGYEIPFTRQFYVYE 616

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEM 671
           P R + +I AE+K +E QI   ++ +
Sbjct: 617 PPRPVDEIAAEIKELEEQIQGWMKGL 642


>gi|319775045|ref|YP_004137533.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|329123047|ref|ZP_08251618.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|317449636|emb|CBY85842.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|327471978|gb|EGF17418.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 790

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 227/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDTEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +A L  D                                              K   L 
Sbjct: 534 NIASLRFDKALFEPMQYLYRQYGGQVYNAGFLTQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       KT K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFDDFNQFKQAVECRLKTEKIPLSATEKKAIFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             D  +  V                                     GE   +   ++L +
Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCQRYQCQADGLADFGYYTTGKAGEYILYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L ++  ++  +E Q   L+ E+ 
Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788


>gi|148825621|ref|YP_001290374.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittEE]
 gi|148715781|gb|ABQ97991.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittEE]
 gi|309972765|gb|ADO95966.1| Probable type I restriction modification system, methylase
           component HsdM2 [Haemophilus influenzae R2846]
          Length = 790

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 226/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ GY FYNTS+++L +L  T          N E Y+  FS N + I +
Sbjct: 66  AFTELDDLPLKKITGYVFYNTSKWTLKSLYQTAGNTPQHMLANFEEYLDGFSTNVQEIIK 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGI-------------ELHPDTVPDRVMSNIYEHLI 163
            F  S  I  +    +L  + + F                +     + +  M  ++E LI
Sbjct: 126 CFKLSEQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEDNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +A L  D                                              K   L 
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGEQVYNAEYLAKTEPEISTWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       KT K+  S +   A  NA  
Sbjct: 594 VKTWEKAATLFQTASTLLEHFGSTQFDDFNQFKQAVEGRLKTEKIPLSATEKKAIFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             +  A  V                                     GE   +   ++L +
Sbjct: 654 WYNENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYIQYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNILDYFKAEVQPHISEAWLN--------MENVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L ++  ++  +E Q   L+ E+ 
Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788


>gi|145629011|ref|ZP_01784810.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145639606|ref|ZP_01795210.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|144978514|gb|EDJ88237.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145271397|gb|EDK11310.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|162949228|gb|ABY21301.1| probable type I secretion system methylase [Haemophilus influenzae]
 gi|309750478|gb|ADO80462.1| Probable type I restriction modification system, methylase
           component HsdM2 [Haemophilus influenzae R2866]
          Length = 790

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 226/803 (28%), Positives = 346/803 (43%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVKLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S+M D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQMFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +  L  D                                              K   L 
Sbjct: 534 NIEPLRFDKALFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       K  K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTASKLLKHFGEQQFHDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             +  A  V                                     GE   +   ++L +
Sbjct: 654 WYNENAAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L ++  ++  +E Q   L+ E+ 
Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788


>gi|114047282|ref|YP_737832.1| N-6 DNA methylase [Shewanella sp. MR-7]
 gi|113888724|gb|ABI42775.1| N-6 DNA methylase [Shewanella sp. MR-7]
          Length = 829

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 231/829 (27%), Positives = 364/829 (43%), Gaps = 183/829 (22%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+ AV E+        
Sbjct: 6   HNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEM 65

Query: 66  ---NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
               +D E     +GY FYNTS+++L +L +T T        N E Y+  FSDN K I E
Sbjct: 66  QATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
            F+  S I  +    +L  + + F    ++                  +  M  ++E LI
Sbjct: 126 CFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQL----PLTMTVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            N + +   +    K    +  +G+E+  ET+A+C + M+I+           +NI+ GS
Sbjct: 242 QNFIEEKYPNDPSVKTKRDVYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGS 294

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------G 327
           TLS D F   RF + LSNPP+GK W  ++  ++    +    RF                
Sbjct: 295 TLSTDEFAASRFDFMLSNPPYGKSWASEQKHIKD-GSDVIDPRFKVSLKDYWGNLEVVDA 353

Query: 328 LPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + NK++ P     G R A V + S LF G AG GES IRR+++END
Sbjct: 354 TPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIEND 413

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRII 444
           +++AIV LP +LF+ T I TY+W+L+N K E R+GKVQLI+A+ L+  +R N G K    
Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEF 473

Query: 445 NDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLRPLRMS 487
             +   +I D Y++  + +                  S++     FGY ++ + RP R  
Sbjct: 474 APEHITEITDTYLACVDVERALDATAPEGMGDPVGIASKVFSNEDFGYYKVTIERPDRRR 533

Query: 488 FILDKTGLARLEADITWRK----------------------------------------- 506
               +  +A L  D    +                                         
Sbjct: 534 AKFTQEAIAPLRFDKQLSEVMEYVYAEHGERVYEKTAPSNNKEGDEKKRSFLKSIEKDIL 593

Query: 507 ---------LSPLHQSFWLD-----ILKPMMQQ----IYPYGWAESFVKESIKSNEAKTL 548
                    L+   ++  LD      LK +++     +   G  E     S K+   K+L
Sbjct: 594 SWCEENDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSL 653

Query: 549 K---VKASKSFIVAFINAFGRKDPRAD-----------------------PVTD------ 576
           K   +K S     A +N     D  A                         V D      
Sbjct: 654 KTHAIKLSAPEKNAILNVVSWYDESAKKVVKKVVKLTGDKLNDLLERYECEVADLPDFGY 713

Query: 577 ---------VNGE---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEK 624
                       E   +  +++L + E+VP  +SI  YF+ EV PHV +A+I+   +   
Sbjct: 714 YPVPTTEGGKKNEFITYETNSDLRDTESVPLKQSIYQYFLDEVKPHVDEAWINLDTV--- 770

Query: 625 DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                ++GYEI+FN++FY+++P R L D+  ++  +E +   L+ ++  
Sbjct: 771 -----KIGYEISFNKYFYRHKPLRSLIDVATDIINLEQKAEGLIAQILG 814


>gi|313895998|ref|ZP_07829552.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975423|gb|EFR40884.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 662

 Score =  617 bits (1591), Expect = e-174,   Method: Composition-based stats.
 Identities = 217/702 (30%), Positives = 338/702 (48%), Gaps = 80/702 (11%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +  ++ +FIW  A++ L   ++   +  VILP T++RRL+  LE T+ AV      F  
Sbjct: 4   QTHNAIVSFIWGIADECLRDIYQSGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFED 63

Query: 65  S--NIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDF 118
           +  ++  E+    AG +FYN S + L  L       + + +  +Y+  FS N + I + F
Sbjct: 64  AHVDVPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQSLKADFVAYLNGFSPNVREILDKF 123

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV----------------PDRVMSNIYEHL 162
            F + I  +EKAG+L  + + F+  +++                     +  M  I+E L
Sbjct: 124 KFDTQIDTMEKAGILGAVIEKFTASDINLSPYPIYKDAEKKEVLHPGLDNHSMGTIFEEL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F    ++ A +  TPRDVV L   L+  P      +      + YD   GTGG LT 
Sbjct: 184 IRKFNEANNQQAGEHWTPRDVVELMADLIFVPIRHELLD---ATYSCYDGASGTGGMLTV 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   + +    H     +  +GQE+ PET+A+C A ML++          + NI+ GSTL
Sbjct: 241 AQARLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKG-----DGAEAANIEYGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL---------PKISD 333
           S+D      F + LSNPP+GK W+ D   +  +  + E  RF   L         P++SD
Sbjct: 296 SEDHHAKMHFDFMLSNPPYGKNWKADATKMGGK-SDIEDPRFRVTLADGERLDAFPRVSD 354

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL++   K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+AL
Sbjct: 355 GQLLFLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIAL 414

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I TY+WILSN+K + R+GK+QLI+AT +   +R N GKK      + R +I
Sbjct: 415 PENMFYNTGIGTYIWILSNKKEKRRKGKIQLIDATAIKAPLRKNLGKKNCEFTPELRAEI 474

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L ++++ E    S++   + FGY  + V RPLR+    +K   A L           L  
Sbjct: 475 LRVFLAYEESDVSKIFAGKEFGYWSVTVERPLRLRITREKELPAGL-----------LRS 523

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           +      +  +       W             AK   +K   + +         KDP A 
Sbjct: 524 AEERAAYQRALDTTPLDDWTAF----------AKATGLKP--ALLKKLRPHITVKDPAAQ 571

Query: 573 PVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630
           PV         D+ L + ENVP      I  +   EV P+ PDAYI        D++   
Sbjct: 572 PVAGA-----ADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAYI--------DEKKTE 618

Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +GYEI+F ++FY+    RK+ +I  +++ VE     LL  + 
Sbjct: 619 IGYEISFTKYFYRPLELRKIDEIVHDIRVVEDASNRLLNAVL 660


>gi|320529369|ref|ZP_08030457.1| N-6 DNA Methylase [Selenomonas artemidis F0399]
 gi|320138335|gb|EFW30229.1| N-6 DNA Methylase [Selenomonas artemidis F0399]
          Length = 662

 Score =  616 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 213/702 (30%), Positives = 339/702 (48%), Gaps = 80/702 (11%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +  ++ +FIW  A++ L   ++   +  VILP T++RRL+  LE T+ AV      F  
Sbjct: 4   QTHNAIVSFIWGIADECLRDIYQRGKYRDVILPMTVIRRLDSVLEETKGAVLAAKRKFED 63

Query: 65  S--NIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDF 118
           +  ++  E+    AG +FYN S + L  L       N + +  +Y+  FS N + I + F
Sbjct: 64  AHVDVPPETLCIKAGQAFYNDSPFLLKDLTSRTNEQNLKADFIAYLNGFSPNVQEILDKF 123

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTV----------------PDRVMSNIYEHL 162
            F + I  ++ AG+L  + + F+  +++                     +  M  I+E L
Sbjct: 124 KFRTQIDTMDDAGILGAVIEKFTASDINLSPYPIYKDAEKKDVLHPGLDNHSMGTIFEEL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           IR+F  + +E A +  TPRDVV L   L+  P      +      + YD   GTGG LT 
Sbjct: 184 IRKFNEDNNEEAGEHWTPRDVVELMADLIFVPIRHELLD---ATYSCYDGASGTGGILTV 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   + +    H     +  +GQE+ PET+A+C A ML++          + NI+ GSTL
Sbjct: 241 AQARLQELAEEHGKAVSIHLYGQEVNPETYAICTADMLLKG-----DGAEAGNIKYGSTL 295

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL---------PKISD 333
           S+D      F + LSNPP+GK W+ D   +  +  + +  RF   L         P++SD
Sbjct: 296 SEDHHAKMYFDFMLSNPPYGKNWKADATKMGGK-SDIKDPRFRVTLADGERLAAFPRVSD 354

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G +LFL++   K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI+AL
Sbjct: 355 GQLLFLLNNIAKMKQNTKLGSRIAEVHNGSSLFTGDAGSGESNARRFMIENDLVEAIIAL 414

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I TY+WILSN+K + R+GK+QLI+AT + + +R N GKK      + R +I
Sbjct: 415 PENMFYNTGIGTYIWILSNKKEKRRKGKIQLIDATAMKSPLRKNLGKKNCEFTPELRAEI 474

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L I+++ E    S++ + + FG+  + V RPLR+        + R          +   +
Sbjct: 475 LRIFLAYEESDVSKIFEGKEFGFWSVTVERPLRL-------RIERERTLPAGLFGTAEER 527

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           + +   L       +                 AK   +K   + +         KDP A 
Sbjct: 528 AAYQRALDTAPLDDWT--------------AFAKATGLKP--ALLKKLRPHITVKDPAAQ 571

Query: 573 PVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630
           PV         D+ L + ENVP      I  +   EV P+ PDAYI        D++   
Sbjct: 572 PVAG-----EADSALRDTENVPLNYPGGIAAFIENEVRPYAPDAYI--------DEKKTE 618

Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +GYEI+F ++FY+    RK+ +I  +++ VE     LL  + 
Sbjct: 619 IGYEISFTKYFYRPLELRKIDEIVHDIRVVEDASNRLLNAVL 660


>gi|121583286|ref|YP_973722.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
 gi|120596544|gb|ABM39980.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
          Length = 607

 Score =  616 bits (1588), Expect = e-174,   Method: Composition-based stats.
 Identities = 253/678 (37%), Positives = 354/678 (52%), Gaps = 79/678 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + + LANF+W  A+ L GD+K  D+GKVILP TLLRRL+C LE T+  V E++    
Sbjct: 1   MAQNFSELANFVWSVADLLRGDYKAADYGKVILPLTLLRRLDCVLEGTKEQVLEEHAKHK 60

Query: 64  GSNID----LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
           G             + +  +FYNTS ++L TL     + R NL +YI  FS +A+ +FE 
Sbjct: 61  GEGDAPTSLDRILKRKSKQAFYNTSPFTLQTLLDDQKHIRQNLTAYIGEFSADARDVFER 120

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F F   +  L+   LL+ + + F+ I+LHPD VP+  M  ++E LIR+F    +E A + 
Sbjct: 121 FKFLERLVELDDKDLLFLLMQKFASIDLHPDAVPNETMGLVFEELIRKFAEASNETAGEH 180

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L    L   D       PG++R++YDPT GTGG L+             K  
Sbjct: 181 FTPREVIQLIVHCLFSGDSEALS-KPGVVRSMYDPTAGTGGILSVGEAVARSINKSAK-- 237

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +V  GQEL  E++A+C A MLI+  +        KNI +G+TLS D F  ++F Y  +
Sbjct: 238 --MVLFGQELNDESYAICKADMLIKGQDP-------KNIVRGNTLSADGFPDEKFDYGAA 288

Query: 298 NPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG  W+K  D ++ EH+  G  GRFGPGLP++SDGS+LFLMHL +K+     GGGR 
Sbjct: 289 NPPFGVDWKKVLDPIKTEHETKGFAGRFGPGLPRVSDGSLLFLMHLISKMRPAAEGGGRI 348

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            IVL+ SPLF G AGSGESEIRRWLLEND++EAI+ALP D+FF T IATY++IL N K  
Sbjct: 349 GIVLNGSPLFTGDAGSGESEIRRWLLENDMLEAIIALPNDIFFNTGIATYIFILDNDKKA 408

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +R+GKVQLI+AT ++T ++   G KR                                  
Sbjct: 409 DRKGKVQLIDATRMYTKMKKSLGNKRV--------------------------------- 435

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            RI   +   +  +                +     +S   +  +    +I    +   F
Sbjct: 436 -RITDEQISEIVGVYSAGAKDANFE----LEFKEPVKSTGGNPAEAPALRIVSKVFENKF 490

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
                 + +    + K  K                        GE   D +L + E+VP 
Sbjct: 491 FGYRKVTVDRPLAEGKTGKF---------------------KKGEKAFDKDLRDTESVPL 529

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            ESI  YF REV PHVPDA+++K   DEKD   G+VGYEINFNR+FY Y+  RK   I  
Sbjct: 530 TESIDAYFKREVLPHVPDAWVNKDVKDEKDGLPGKVGYEINFNRYFYVYKAPRKPAVIAE 589

Query: 656 ELKGVEAQIATLLEEMAT 673
           E+  +E +   L++ +  
Sbjct: 590 EILEMEKRFVELMKGVVA 607


>gi|319896546|ref|YP_004134739.1| type i restriction-modification system, methyltransferase subunit
           [Haemophilus influenzae F3031]
 gi|317432048|emb|CBY80397.1| putative type I restriction-modification system,methyltransferase
           subunit [Haemophilus influenzae F3031]
          Length = 790

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 226/803 (28%), Positives = 347/803 (43%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHISEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTVE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +A L  D                                              K   L 
Sbjct: 534 NIASLRFDKALFEPMQYLYRQYGGQVYNARFLAKTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       KT K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTASKLLEHFGEQQFHDFNQFKQAVEGRLKTEKIPLSATEKKAVFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             D  +  V                                     GE   +   ++L +
Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L ++  ++  +E Q   L+ E+ 
Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788


>gi|229847072|ref|ZP_04467178.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 7P49H1]
 gi|229810156|gb|EEP45876.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 7P49H1]
          Length = 790

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 226/803 (28%), Positives = 346/803 (43%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP+++AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKNAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNEETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 354 PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFA 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            +A L  D                                              K   L 
Sbjct: 534 NIAPLRFDKALFEPMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       K  K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTALKLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             D  +  V                                     GE   +   ++L +
Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCRRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L ++  ++  +E Q   L+ E+ 
Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788


>gi|68248716|ref|YP_247828.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|68056915|gb|AAX87168.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
          Length = 790

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 222/803 (27%), Positives = 345/803 (42%), Gaps = 158/803 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++ P +   G R A V + S LF G AGSGES IRR ++E DL
Sbjct: 354 PRSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDL 413

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A+ L+  +R N G K     
Sbjct: 414 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDASLLFRKLRKNLGDKNCEFV 473

Query: 446 DDQRRQILDIYVSREN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            +   +I   Y+                G  S++ D + FGY ++ + RP R S      
Sbjct: 474 PEHIAEITQNYLDFTAKARETDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAE 533

Query: 494 GLARLEADITW------------------------------------------RKLSPLH 511
            ++ L  D                                              K   L 
Sbjct: 534 NISPLRFDKALFEPMQYLYRQYGEQIYNAGFLAQTEQEITAWCEAQGIALNNKNKTKLLD 593

Query: 512 QSFWLDILK------PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              W            +++      + +    +       K  K+  S +   A  NA  
Sbjct: 594 VKTWEKAAALFQTASTLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVS 653

Query: 566 RKDPRADPVT---------------------------------DVNGE---WIPDTNLTE 589
             D  +  V                                     GE   +   ++L +
Sbjct: 654 WYDENSAKVIAKTLKLKPNELDALCQRYQCQADELADFGYYATGKAGEYILYETSSDLRD 713

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E++P  ++I DYF  EV  H+ +A+++         E  ++GYEI+FN++FY+++P R 
Sbjct: 714 SESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRS 765

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L ++  ++  +E Q   L+ E+ 
Sbjct: 766 LAEVAQDILALEKQADGLISEIL 788


>gi|331007180|ref|ZP_08330393.1| N-6 DNA methylase [gamma proteobacterium IMCC1989]
 gi|330419012|gb|EGG93465.1| N-6 DNA methylase [gamma proteobacterium IMCC1989]
          Length = 817

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 222/822 (27%), Positives = 356/822 (43%), Gaps = 176/822 (21%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV ++        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPSKQAVLDEVKFQKEDM 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D E     +G  FYN S+++L +L S  T        N E Y+  +SDN K I E
Sbjct: 66  DATELDDEPLKAASGQVFYNVSKWTLKSLFSNATNNQQILLANFEEYLNGYSDNVKEIIE 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRV-----------MSNIYEHLI 163
            F+  S I  +    +L  + + F    I L P+   D             M  ++E LI
Sbjct: 126 RFELFSKIRHMAGKDVLLDVLEKFVSPYINLTPNPAEDPDGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP          +  T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPIKDDL----PLTITVYDPACGSGGMLTES 241

Query: 224 MNHVADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            N + +     K    +     +G+E+  ET+A+C + M+I+           +NI+ GS
Sbjct: 242 QNFIEEKYPTQKEGKSIRDIYLYGKEINDETYAICKSDMMIKGNNP-------ENIKVGS 294

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------G 327
           TLS D F   RF + LSNPP+GK W  ++  ++   +     RF                
Sbjct: 295 TLSTDEFASDRFDFMLSNPPYGKSWASEQKNIKDGGE-VIDPRFKVELSDYWGNKETVDA 353

Query: 328 LPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            P+ SDG +LFLM + +K++ P     G R A V + S LF G AG GES IRR+++END
Sbjct: 354 TPRSSDGQLLFLMEMVSKMKSPSTSPMGTRIASVHNGSSLFTGDAGGGESNIRRFIIEND 413

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDLWTSIR-NEGK 439
           +++AIV LP +LF+ T I TY+W+L+N K       +RRGKVQLI+A+ L+  +R N G 
Sbjct: 414 MLDAIVQLPNNLFYNTGITTYIWLLNNNKKGDGKGPDRRGKVQLIDASLLYRKLRKNLGN 473

Query: 440 KRRIINDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLR 482
           K      +   +I   Y+     +                  S++ +   FGY ++ + R
Sbjct: 474 KNCEFAPEHIAEITQAYLDCAEVERELDASAPEGMGDPIGIASQVFNNEDFGYYKVNIER 533

Query: 483 PLRMSFILDKTGLARLEADI---------------------------------------- 502
           P R         +A L  D                                         
Sbjct: 534 PDRRKAKFSPEAIAPLRFDKSLAEVMEHLFEEHGDKVYDKGFLKGISKDILQWCEDNDIS 593

Query: 503 --TWRKLSPLHQSFW------LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                K   L + +W      L+    +M++I    + +  + +       K  K+K S 
Sbjct: 594 INAKAKAKLLDEKYWQKLLVILEAANLLMREIGSDEFNDFNLFKDKVDAVFKAQKIKLSA 653

Query: 555 SFIVAFINAFGRKDPRADPVTDV------------------------------------- 577
               A +N     +  A+ V                                        
Sbjct: 654 PEKKAILNVVSWYEESAEKVVKKIVKLSGNKLDELLDHLGCSQDQLADFGFYPTSDCGDS 713

Query: 578 ---NGE---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
               GE   + P ++L + E+VP  + I +YF+ EV PHV +A+I+            ++
Sbjct: 714 KKSAGEYVTYEPSSDLRDSESVPLAQEIHEYFLEEVKPHVEEAWINLD--------STKI 765

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           GYEI+FN++FY+++P R L ++  ++  +E +   L+ ++  
Sbjct: 766 GYEISFNKYFYRHKPLRSLDEVANDIIDLEQKAEGLIAQILG 807


>gi|330971617|gb|EGH71683.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 521

 Score =  611 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 226/538 (42%), Positives = 317/538 (58%), Gaps = 19/538 (3%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + F+   L P+ + +  M  I+E LIR+F    +E A +  TPRD+VHL T+L++   D 
Sbjct: 1   QRFAVAPLEPERISNFGMGIIFEELIRKFAESSNETAGEHFTPRDIVHLTTSLVITDQDH 60

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
               +P  I T+YDPT GTGGFL++   ++            +  HGQEL PE++A+C A
Sbjct: 61  KL--APNSIVTIYDPTAGTGGFLSEGDEYIQS----ISEKVSVSLHGQELNPESYAICKA 114

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            MLI+  +         +I+ G+TLS D    KRF + LSNPPFG +W+K +  +  EH 
Sbjct: 115 DMLIKGQDV-------ASIKLGNTLSNDQLADKRFDFMLSNPPFGVEWKKVQKQITDEHS 167

Query: 318 -NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             G  GRFGPGLP++SDGS+LFL+HL +K+  P +GG R  I+L+ SPLF G AGSGESE
Sbjct: 168 HKGFDGRFGPGLPRVSDGSLLFLLHLVSKMRDPRDGGSRIGIILNGSPLFTGGAGSGESE 227

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IRR+LL+NDL+EAI+ALPTD+F+ T IATY+WILSN K   R+GKVQLI+ +  +  +R 
Sbjct: 228 IRRYLLQNDLVEAIIALPTDMFYNTGIATYVWILSNHKAAARQGKVQLIDGSQHYAKMRK 287

Query: 437 -EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             G KR+ I +DQ  +++ +Y S E    S++     FGYRRI V RPLR++F      +
Sbjct: 288 SLGSKRQYITEDQISELVRLYGSFEQTAQSKIFPIDAFGYRRITVERPLRLNFQTSTERI 347

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
           A++  +   +KL    +   L  L+ M                 +         V  S  
Sbjct: 348 AKVLEEKALQKLDSAARQQLLAALQAMDA---TKLHRNREQFSKLLKKALTAHSVSLSMP 404

Query: 556 FIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY 615
            + A +NA  ++DP AD  T   G+   DT L + ENVP  ES+ DYF REV PHVPDA+
Sbjct: 405 ELKALLNALSKRDPEADICT-SKGQLEADTGLRDNENVPLGESVHDYFHREVIPHVPDAW 463

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ID+   D  D E+G VG+EI FNR FY +QP R L +ID +LK    +I  ++E ++ 
Sbjct: 464 IDESKTDALDGEVGIVGFEIPFNRHFYMFQPPRPLAEIDRDLKACTDRIKQMIEGLSA 521


>gi|170731315|ref|YP_001776748.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
 gi|167966108|gb|ACA13118.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
          Length = 763

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 219/777 (28%), Positives = 339/777 (43%), Gaps = 148/777 (19%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSE 85
              +  VILPFT+LRRL+  LE T+ AV E+       N+  +  +    AG +FYN SE
Sbjct: 2   RGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDAHNVAEQDGALRMAAGQAFYNVSE 61

Query: 86  YSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           ++L+ L ++      R++  +Y+  FS + + I   F+F + I +L  + +L  + ++F 
Sbjct: 62  FTLAKLKASAAGQRLRDDFIAYLDGFSRDVQEILTKFNFRNQIQKLVDSHVLGYLIEDFL 121

Query: 142 GIELHPD--------------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             E++                 + +  M  ++E LIRRF  + +E A +  TPRDVV L 
Sbjct: 122 NPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNEDNNEEAGEHFTPRDVVQLM 181

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             LL  P     + S     +LYD +CGTGG LT A   +      H     +   GQE+
Sbjct: 182 AKLLFLPVAERIESS---TYSLYDGSCGTGGMLTVAEEALHALAEQHGKEVSIHLFGQEI 238

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRFHYCLSNPPFGKK 304
             ET+A+C A +L++          ++NI  G   STLS D F  + F + +SNPP+GK 
Sbjct: 239 SDETYAICKADLLLKG-----EGAEAQNIVGGADKSTLSADQFHSRAFDFMISNPPYGKS 293

Query: 305 WEKDKDAVEKEHKNGELGRFGPG---------LPKISDGSMLFLMHLANKLELPPNGGGR 355
           W+ D + +  + K     RF            L + SDG ++F ++   K++     G R
Sbjct: 294 WKTDLERMGGK-KGFSDPRFIVSHGGDSEFKLLTRSSDGQLMFQVNKLQKMKHNTPLGSR 352

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+ T IATY+W+L+N+K 
Sbjct: 353 IALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFYNTGIATYIWVLANKKA 412

Query: 416 EERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTF 473
           E RRGKVQLI+A+  +  +R N GKK   +      +ILD+Y+ + +    S+  D + F
Sbjct: 413 EARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLGQAQEAAQSKWFDTQDF 472

Query: 474 GYRRIKV------------LRPLRMSFILDKTGL---------ARLEADITWRKLSPLHQ 512
           GY +I +             R   + F      L           L  +   RK +    
Sbjct: 473 GYWKITIERPLRLKSQLSDERIESLRFATGDEALRAEIYATHGEALYTEFAKRKPAIEAW 532

Query: 513 -----------------------------------------------SFWLDILKPMMQQ 525
                                                             +++ +   Q 
Sbjct: 533 LKGEDENEDDDNEDSDSGDDNEAPAARKAVPVKRRKKLLDASTWQRDKALMEVAQRAQQT 592

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNG------ 579
           +    + +     +      K    + S         A   +D  A PV           
Sbjct: 593 LGHAVFDDHNAFCACFDAVCKAQDARLSAPEKKVIYKAVSWRDDAALPVIAKRSKLKAGD 652

Query: 580 ---------------------EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYI 616
                                E+ PD+ L + E VP  E   I  +F REV PH PDA+I
Sbjct: 653 YFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWI 712

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                        +VGYEI+F+R+FY+  P R L +I A++  +E Q   LL ++  
Sbjct: 713 ATNK--------TQVGYEISFSRYFYKPVPLRTLAEIRADILVLEQQTEGLLHKIVG 761


>gi|257091989|ref|YP_003165630.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257044513|gb|ACV33701.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 687

 Score =  610 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 238/704 (33%), Positives = 355/704 (50%), Gaps = 84/704 (11%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV--------KVAGYSFYNTSEY 86
           +LP T+LRR +  L P++ AV +++       I     +              F+N S+ 
Sbjct: 1   MLPLTVLRRFDAVLAPSKEAVLKRHAELSSKGIPNIDAILNYRAKDEDGTALGFHNHSQL 60

Query: 87  SLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
               L     N   +L  YIA FS+N + IFE F+F   I +LE++  LY++   F+ I+
Sbjct: 61  DFPELKGDPDNIGRHLADYIAGFSENIRKIFERFEFEKEIEKLEESNRLYQVVAQFAEID 120

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           LHP  V +  M  ++E LIRRF    +E A D  TPR+V+ L   LLL+PD ++  ++ G
Sbjct: 121 LHPRKVDNITMGLVFEDLIRRFNEAANETAGDHFTPREVIQLMVNLLLEPDTSVLTQA-G 179

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +I T+ DP CGTGG L +A N +        +       GQ+  P ++AV  + +LI+  
Sbjct: 180 VIVTICDPACGTGGMLAEAQNWIRAHNEQATVK----VFGQDYNPRSYAVAASDLLIKG- 234

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-HKNGELGR 323
                      +  G+TL+ D F   RF Y L+NPPFG  W+ ++  +++  +  G  G+
Sbjct: 235 ------HKDGQVMLGNTLTDDPFPEHRFDYLLANPPFGVDWKAERKVIDRWPNFRGYSGK 288

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNG-----GGRAAIVLSSSPLFNGRAGSGESEIR 378
               LP+I+DG++LFL+++ +K +   +G     G R AIV + SPLF G AGSGESEIR
Sbjct: 289 ----LPRINDGALLFLLYMMSKFQDYKSGDRDKPGSRTAIVFNGSPLFTGGAGSGESEIR 344

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNE 437
           RW++E D +EAIVALP  +F+ T I T++W+++NRK   R+ K+QLI+A + +T + R+ 
Sbjct: 345 RWIIERDQLEAIVALPEQMFYNTGIGTFIWVVTNRKAAHRKCKIQLIDARERYTPMKRSL 404

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           G KRR ++      +   + + EN K SR+ D   FGYRRI VLRPLR+ F +      R
Sbjct: 405 GDKRRYLDQTALDAVTREHGAMENSKTSRVFDNTDFGYRRITVLRPLRLRFEITDEARER 464

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
                    L    Q+   ++    +            V  ++  +     K     +  
Sbjct: 465 FLNTCP--DLFDALQAVQDELGNEPLLDWNQAWDTIQQVFRTLPDDVEGWAKGAKGTAHK 522

Query: 558 VAFINAFGRKDPRADPVTDVNG-------------------------------------- 579
             F + F   DP A PV   +                                       
Sbjct: 523 KIFRDCFTTVDPDAAPVIAKHHKVEPLNRAALFPGQALPADITKDELYALLGLHKLPSPR 582

Query: 580 -----------EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
                      E+ PD  L + E+VP  E I  Y +REV P+V DA+ID+  +DE+D  I
Sbjct: 583 ARGAGAEGVCIEYEPDPALKDTESVPLKEDIVSYVLREVRPYVADAWIDRETLDEQDGGI 642

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           G+VGYEINFNR F+QYQP R L++IDAEL  VE +I  LL E+ 
Sbjct: 643 GKVGYEINFNRVFFQYQPPRPLREIDAELAEVEKRILGLLSEVT 686


>gi|293401125|ref|ZP_06645269.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305251|gb|EFE46496.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 675

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 207/710 (29%), Positives = 333/710 (46%), Gaps = 79/710 (11%)

Query: 1   MTEF--TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M E        ++ +FIW  A+D L   +    +  VILP T++RRL+  LE T+ AV  
Sbjct: 1   MDENMDNQVHNAIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEDTKPAVLA 60

Query: 58  KYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNA 111
                  + I     +    AG +F N+S + L  L S   +     + E+Y+  FS N 
Sbjct: 61  MKEKMDAAGITNQWPALCNAAGQAFCNSSPFLLKDLTSRAKKQTLKVDFEAYLDGFSPNV 120

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD----------------TVPDRVM 155
           + I E F F + I  +  A +L  + + F    ++                   + +  M
Sbjct: 121 QEILEKFKFRNQIDTMIDADILGAVIEKFISPTINLSPKPVYTDDTMKTIKLPALDNHGM 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++E L+RRF    +E A +  TPRDVV L   L+  P     K+      + YD  CG
Sbjct: 181 GTVFEELVRRFNEANNEEAGEHWTPRDVVDLMADLIFIPIADQIKD---ATYSCYDGACG 237

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TGG LT A + +            +   GQE++PET+A+C A ML++        + +++
Sbjct: 238 TGGMLTVAQDRLMTLARRRGKDVSIHLFGQEVQPETYAICKADMLLKG-----DGEQAEH 292

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--------- 326
           I  GSTLS D    ++F + L+NPP+GK W+ D + +  + K+    RF           
Sbjct: 293 IAYGSTLSADGNASRQFDFMLANPPYGKSWKTDAEKMGGK-KDILDSRFNAYLEDGTQLS 351

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +P+  DG +LFL++  +K++     G R A V + S +F G AGSGES  RR+L+ENDL
Sbjct: 352 MIPRTKDGQLLFLLNNVSKMKTDTPLGSRIAEVHNGSSIFTGDAGSGESNARRYLIENDL 411

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIIN 445
           +EAI+ALP  +F+ T + T++W+LSN+K + R+GK+QLI+AT + T  ++  G K   ++
Sbjct: 412 VEAIIALPDRMFYNTPLNTFVWVLSNKKEQRRKGKIQLIDATAMKTPLLKKLGDKGFELS 471

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
            + R++I+ I++  +  +  R+ D   FG+  I V RPLR+            E  I   
Sbjct: 472 PENRKEIIRIFMEMQESEICRVFDNDEFGHWAITVERPLRLRVYP--------ERKIPSG 523

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            L    +  +  I++ + Q +    W                   K     +        
Sbjct: 524 ILKAAEEEQYYSIIEKIKQNVDLSDWTSFAKAT------------KLKAGVLKKIRPFIT 571

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDE 623
            KD  A P+        PD  L + E VP      I+ +   EV  + PDAYI       
Sbjct: 572 EKDASAKPIAG-----EPDVELRDTEIVPLTYEGGIEAFLDNEVRTYSPDAYI------- 619

Query: 624 KDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            D+    +GYEI+FN++FY+ +  R+ + I  EL  +E     ++EE+  
Sbjct: 620 -DESKTTIGYEISFNKYFYKAKELRESETIVKELMTLEKSATEMMEELFG 668


>gi|309776567|ref|ZP_07671547.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915668|gb|EFP61428.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 669

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 215/708 (30%), Positives = 336/708 (47%), Gaps = 77/708 (10%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M     +   + NFIW  A+D L   +    +  VILP T++RRL+  LE T   VR   
Sbjct: 1   MNMDNQTHTQIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTVDKVRSTK 60

Query: 60  LAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKA 113
                + ID    +    AG SF N S + L  L S   +     + E+Y+  FS NA+ 
Sbjct: 61  KMLDENKIDNQWPALCNAAGQSFCNASPFLLKDLTSRANKQKLKTDFETYLDGFSPNAQE 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV----------------PDRVMSN 157
           I E F F + IA +  A +L  + + F   +++                     +  M  
Sbjct: 121 ILEKFKFRNQIATMIDADILGSVIEKFVSSDINLSPYEIYKDDEKTILKHPGLDNHGMGT 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I+E LIR+F  E +E A +  TPRDVV L   L+  P +   K+      T YD  CGTG
Sbjct: 181 IFEELIRKFNEENNEEAGEHWTPRDVVELMADLIFMPIEDQIKD---ATYTCYDGACGTG 237

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G LT A + +    S       +   GQE++PET+A+C A ML++        + +++I 
Sbjct: 238 GMLTVAQDRLQTLASRRGKNVSIHLFGQEVQPETYAICKADMLLKG-----DGEQAEHIA 292

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG---------PGL 328
            GSTLS D    ++F + L+NPP+GK W+ D + +  + K     RF            +
Sbjct: 293 YGSTLSADGNATRQFDFMLANPPYGKSWKVDAEKMGGK-KEILDTRFNTYLEDGTEMKMI 351

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P+ SDG +LFL++   K++     G R A V + S +F G AGSGES  RR+++ENDL+E
Sbjct: 352 PRTSDGQLLFLLNNVAKMKKDSPLGSRIAEVHNGSSIFTGDAGSGESNARRYMIENDLVE 411

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDD 447
           AI+ALP ++F+ T I T++W+LSN+K E R+GK+QLI+AT + + +R   GKK      D
Sbjct: 412 AIIALPENMFYNTGIGTFIWVLSNKKEERRKGKIQLIDATAMKSPLRKKMGKKNCEFTSD 471

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            R++I+ I++  E  + S++ D   F Y  + V RPLR+    D     R+    T++K 
Sbjct: 472 IRKEIMRIFLEMEESEVSKIFDNNDFAYWNVTVERPLRLRVFAD-----RVIPADTFKKA 526

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
                             +  +                     K  K+ +         K
Sbjct: 527 DEYETVTTAIAKAAATAPLDDWSAFAKAT--------------KLKKAQLNKIRPFITEK 572

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
           D  A    D      PD++L + EN+P+     I+ +   EV  + PDAYI        D
Sbjct: 573 DVTA-VAID-----EPDSDLRDTENIPFTYEGGIETFMQNEVLTYAPDAYI--------D 618

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ++  ++GYEI+F ++FY+    R++ DI   L  +E +   ++  +  
Sbjct: 619 EKKTQIGYEISFTKYFYKPAELREMADIIENLNSLEKEADGMMANIMG 666


>gi|317132750|ref|YP_004092064.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470729|gb|ADU27333.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 668

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 214/704 (30%), Positives = 335/704 (47%), Gaps = 76/704 (10%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                 S+ +FIW  A+D L   +    +  VILP T++RRL+  LE T+ AV       
Sbjct: 2   DNQEYNSIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEGTKKAVLTMKKQL 61

Query: 63  GGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFE 116
             + ID    +    AG +F N S + L  L S         + ++Y+  FS N + I +
Sbjct: 62  EAAKIDNQWPALCNTAGQAFCNDSPFLLKDLTSRAKKQTLEADFKAYLDGFSPNVQEILD 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD----------------TVPDRVMSNIYE 160
            F F   I  +  A +L  +   F+  +++                   + +  M  I+E
Sbjct: 122 KFKFRDQIKTMVDADILGAVIDKFTSSDINLSPDPVYKDAEKKIVKLPGLDNHGMGTIFE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LIRRF  E +E A +  TPRDVV L   L   P +   K+      + YD  CGTGG L
Sbjct: 182 ELIRRFNEENNEEAGEHWTPRDVVELMADLAFYPVEDQIKD---ATYSCYDGACGTGGML 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T A   +            +   GQE++PET+A+C A ML++        + +++I  GS
Sbjct: 239 TVAQARLLTLAGRRGKNVSIHLFGQEVQPETYAICKADMLLKG-----DGEEAEHIFYGS 293

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP---------GLPKI 331
           TLS D    ++F + LSNPP+GK W+ D D +  + +     RF            +P+ 
Sbjct: 294 TLSLDGNPSRQFDFMLSNPPYGKSWKTDADKMGGKSEI-LDTRFNAYLPGGEELKMIPRT 352

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           SDG +LFL++  +K++     G R   V + S LF G AGSGES  RR+++E DL+EAI+
Sbjct: 353 SDGQLLFLLNNVSKMKTDTELGSRIIEVHNGSSLFTGDAGSGESNARRYMIERDLVEAII 412

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
           ALP ++F+ T I TY+W+LSN+K E R+GK+QLI+AT++ +S+R N G K      + R+
Sbjct: 413 ALPDNMFYNTGIGTYIWVLSNKKEERRKGKIQLIDATNMKSSLRKNMGNKNCEFTPEIRK 472

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +I+ I++  E    S + D   FGY  + V RPLR+    ++        + T++K S L
Sbjct: 473 EIVRIFLDMEESDVSMIFDNSEFGYWNVTVERPLRLRVFPERE-----IPEDTFKKQSEL 527

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                     P+   +  +       K      +                       DP 
Sbjct: 528 DSVREAVANAPVGTPLDDWDAFAKATKLKKTQLKK--------------IRPFITETDPH 573

Query: 571 ADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
           A  V     E   D NL + EN+P+     I  +  +EV P+ PDAY+        D+  
Sbjct: 574 AKEV-----EGESDPNLRDSENIPFNYDGGIDAFIEKEVKPYAPDAYV--------DESK 620

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            ++GYEI+F ++FY+    R ++DI A LK +E +   +++E+ 
Sbjct: 621 TKIGYEISFTKYFYKPVQLRDMKDILASLKELERESDGVMDEIV 664


>gi|323160770|gb|EFZ46705.1| N-6 DNA Methylase family protein [Escherichia coli E128010]
          Length = 603

 Score =  605 bits (1560), Expect = e-171,   Method: Composition-based stats.
 Identities = 309/618 (50%), Positives = 411/618 (66%), Gaps = 21/618 (3%)

Query: 1   MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ Y
Sbjct: 1   MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60

Query: 60  LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           LA   S IDL   + ++AG++FYNTSEYSL TL +++T +NLE YI+ FS N + IF++F
Sbjct: 61  LAEKQSGIDLGLVLPEIAGFAFYNTSEYSLETLDASDTGDNLEHYISQFSKNVRTIFDEF 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F  TI  LEKA LLY++  +F+ ++LHPD V DRV+S+ YE LI +F S V+E A +FM
Sbjct: 121 KFGQTIEDLEKAKLLYRMVNHFANLDLHPDVVSDRVLSDAYEELILKFASSVNEKAGEFM 180

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD V LAT L+L  D+ +F E  G+IRT+YDPTCGTGGFL+DA++ + + GS  K+  
Sbjct: 181 TPRDAVRLATKLVLAADEDIFSEK-GVIRTIYDPTCGTGGFLSDAISQIEEMGSSAKV-- 237

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             VP GQEL+P THA+ +  M+IR  +++       NI+QG+TLS D     +FHY L+N
Sbjct: 238 --VPFGQELDPATHAMALTNMMIRGFDAN-------NIKQGNTLSDDQLRADKFHYGLAN 288

Query: 299 PPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG KWEK K  VE+EHK     GRFGPGLP ISDGSMLFL+HL +K+E P NGGGR  
Sbjct: 289 PPFGIKWEKAKKEVEREHKQLKYAGRFGPGLPSISDGSMLFLLHLVSKMETPENGGGRVG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVLS SPLFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I TY+WIL+N K   
Sbjct: 349 IVLSGSPLFNGDAGSGPSEIRRWLLEQDLVEAIVALPTDMFFNTGIGTYIWILTNHKEPR 408

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ +VQLIN  D+WT +R  +G KR+ ++D+Q   I+  Y   E     ++     F YR
Sbjct: 409 RKNQVQLINLADIWTPMRKSQGDKRKYLSDEQIDDIVRAYDGFEASDNCKIFQTTDFAYR 468

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           ++ + RPLR    +   G+A      T++KL P  Q+ W+  L   +  + PY WA    
Sbjct: 469 KVTIQRPLRAKLDITAAGIAAFVQQDTFKKLRPEQQAAWVQYLTDNLG-LQPYEWA---- 523

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
           + ++K N  K    K SK+   A    F + DP+ +P  D  G+ I D  L + E++P+ 
Sbjct: 524 RLAVKKNNNKGDFGKCSKALATALTAHFVKIDPQFEPALDEKGQVIADPKLKDTESIPFD 583

Query: 597 ESIQDYFVREVSPHVPDA 614
             ++DYF +EV PHVPDA
Sbjct: 584 RDVEDYFAQEVLPHVPDA 601


>gi|167814675|ref|ZP_02446355.1| putative type I restriction-modification methylase [Burkholderia
           pseudomallei 91]
          Length = 545

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 231/605 (38%), Positives = 326/605 (53%), Gaps = 65/605 (10%)

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
              V    FYNTS   L  L     + R NL +YI +FS  A+ IFE FDF + + RL K
Sbjct: 1   MRIVGDAKFYNTSPLDLVKLLGDQDHIRQNLYAYIQAFSPAARDIFERFDFYTQVERLAK 60

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A LLY + + F+ I+LHP  V +  M  ++E LIR+F    +E A +  TPR+V+ L   
Sbjct: 61  ADLLYLVTEKFANIDLHPTAVDNAQMGLVFEELIRKFAEISNETAGEHFTPREVIRLMVN 120

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL   DD +      ++R +YDPT GTGG L+ A   + +     ++      +GQEL  
Sbjct: 121 LLFIEDDDVLTPGNAVVRAIYDPTAGTGGMLSVAGEFLLEHNPVARL----RMYGQELND 176

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           E++A+C A MLI+  +        +NI  G+TLS D   G++F Y LSNPPFG +W+K +
Sbjct: 177 ESYAICKADMLIKGQDV-------ENIVAGNTLSDDGHAGRQFDYMLSNPPFGVEWKKVE 229

Query: 310 DAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             V  E++  G  GRFGPGLP++SDGSMLFL+HL +K+     GG R  IVL+ SPLF G
Sbjct: 230 KTVRAEYEQKGFAGRFGPGLPRVSDGSMLFLLHLLSKMRPAQEGGSRFGIVLNGSPLFTG 289

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WILSNRK E R+G VQLI+A+
Sbjct: 290 GAGSGESEIRRYVLENDLVEAIVGLPTDMFYNTGIATYVWILSNRKPETRKGFVQLIDAS 349

Query: 429 DLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
             W  +R   G KRR ++D+    +  ++ +    + + + D       R  V     + 
Sbjct: 350 SFWQKMRKSLGSKRREMSDEHIDTVTRLFGNFVEAELTTVFDAEGKELGRWVVPAGSNVP 409

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
            +     +  +     +R                       +G+    V+ +++  + K 
Sbjct: 410 NVPAGGKVKSVPISRIFRN--------------------QEFGYTTITVERALRDEQGKV 449

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
           +                G K  +        G+   D++L + ENVP  + I  YF REV
Sbjct: 450 V---------------LGVKGKQ-------KGKPQADSSLRDTENVPLSDDIGVYFEREV 487

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            PH PDA+I        D++  +VGYEI FNR FY ++P R L  ID ELK V A I  +
Sbjct: 488 LPHAPDAWI--------DEQKNKVGYEIPFNRHFYVFEPPRDLHTIDEELKAVSANIMRM 539

Query: 668 LEEMA 672
           LEE+A
Sbjct: 540 LEELA 544


>gi|260438581|ref|ZP_05792397.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Butyrivibrio crossotus
           DSM 2876]
 gi|292809172|gb|EFF68377.1| putative type I restriction-modification system, M subunit N-6
           Adenine-specific DNA methylase [Butyrivibrio crossotus
           DSM 2876]
          Length = 702

 Score =  598 bits (1542), Expect = e-169,   Method: Composition-based stats.
 Identities = 223/701 (31%), Positives = 340/701 (48%), Gaps = 55/701 (7%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++  NFIW  A  L G ++   +  VI+P  ++RR ECAL+ TR AV +K+      +  
Sbjct: 19  STEVNFIWSIANKLRGPYQSDKYKDVIIPMVIIRRFECALDDTREAVAKKFEEV--PSYP 76

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            ++  +++GY FYNTS  +L+ L   + +   N + YI SFS N + I  + DF   I +
Sbjct: 77  AKAMYRISGYQFYNTSRLTLAELVNDADHLAANFKFYIKSFSANIQDIIRNLDFDKQIDK 136

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++K   L  + K FS I+L+P+T+ +  M  I+E LIR+F    +  A D  T RD++  
Sbjct: 137 MDKHNRLLSVVKAFSEIDLNPNTIDNMKMGYIFEELIRKFSE--NAEAGDHYTGRDIIKA 194

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             ++LL        +  G I T+ D   GTGG L+ A N++        +        QE
Sbjct: 195 MVSILLAEGCDDIFDD-GKIVTILDQAAGTGGMLSTANNYIKRFNPTADV----RLFSQE 249

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW- 305
           + PE++A+C+A MLIR   +D       NI+   T+  D FT  +  + + NPPFG+ W 
Sbjct: 250 VNPESYAMCLAEMLIRGQNAD-------NIRLQDTMKADCFTDTKMRFVIENPPFGQPWG 302

Query: 306 -----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                E D++AV+ E   G  GRF  G P   D  +LF+    NK++      GRAAI+ 
Sbjct: 303 GKDAPEGDEEAVKAEVLKGTSGRFPAGAPSSGDMQLLFIQSAINKMDDEC---GRAAIIE 359

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + SPLF+G   SGES+IRRWLLEND IEAI+ L TD+F+ T IATY+W+LS  K  ER+G
Sbjct: 360 NGSPLFSGGTSSGESQIRRWLLENDYIEAIIQLSTDMFYNTGIATYIWVLSKNKRAERKG 419

Query: 421 KVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           K+QLI+A+    S+R   G KR+ I  + R +I  +Y   +  +  ++ D   F YR   
Sbjct: 420 KIQLIDASSFSHSLRKTLGNKRKEITPEDRIEITKLYADFKENEHCQIYDNTEFIYREYA 479

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP----------- 528
           V++PL+ S+ + +  +  + +      L    +   L+ +  +  +              
Sbjct: 480 VMQPLQRSYAITEDRINAMLSSGALSTLYDEAKVDELENMDELTGKDKNKLDNFKKNKPI 539

Query: 529 ----------------YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
                           Y   E F               K SK      I      D  AD
Sbjct: 540 YDAIVDALNNAVSDKVYKNPEIFTPVVNNILSGIISDAKDSKKIADKIIKGLSVMDKTAD 599

Query: 573 PVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG 632
              D  G  I DT   + E VP+  +I DY   EV PHVPDA         K   + + G
Sbjct: 600 IQKDKKGNVIYDTETKDTEIVPWETNIDDYMASEVLPHVPDAKAFFEEDLGKKNPVIKTG 659

Query: 633 YEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            EI F R+FY+YQ      ++      +EA + + ++++  
Sbjct: 660 AEIPFTRYFYKYQAPASSDELAKRFNELEASVDSRIKKLFG 700


>gi|119513481|ref|ZP_01632505.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414]
 gi|119461861|gb|EAW42874.1| putative DNA methylase HsdM [Nodularia spumigena CCY9414]
          Length = 575

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 194/602 (32%), Positives = 303/602 (50%), Gaps = 62/602 (10%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------P 151
             FSDN K I   F+  + I R+ +A +L+ + + F+  +++                  
Sbjct: 2   DGFSDNVKEIISKFELRNQIRRMVEADVLHDVLEKFTSTDINLSPHEIVDSKGETLPGLS 61

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  M  ++E LIR+F  E +E A +  TPR+V+ L   LL  P           + T+YD
Sbjct: 62  NLGMGYVFEELIRKFNEENNEEAGEHFTPREVIKLMIHLLFIPIKDEI----PPVITVYD 117

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+GG LT++   +            +  +G+E+  ET+A+C + M+I+  +      
Sbjct: 118 GACGSGGMLTESQGFIEAAEGEINSQSKVYLYGKEVNGETYAICKSDMMIKGNDP----- 172

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG------ 325
             +NI+ GSTL+ D F   RF + LSNPP+GK ++ D+  +    K     RF       
Sbjct: 173 --ENIKFGSTLATDDFGEMRFDFMLSNPPYGKSYKSDQKYILD-GKEVLDPRFQVELQNF 229

Query: 326 -------PGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                  P +P+ SDG +LFLM +  K++       G R A + + S LF G AGSGES 
Sbjct: 230 QGQLETLPAIPRSSDGQLLFLMDMVGKMKPLNQSPLGSRIASIHNGSALFTGDAGSGESN 289

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR- 435
           IRRW++END +E IV LP ++F+ T IATY+W+LSNRK E+RRGKVQLI+ T+ +  +R 
Sbjct: 290 IRRWIIENDWLECIVGLPLNMFYNTGIATYIWVLSNRKPEKRRGKVQLIDGTEWYGKLRK 349

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           N GKK   +  +  +QI + ++  E    S++ D + FGY +I V RPLR+SF +    +
Sbjct: 350 NLGKKNCELTPENIQQITETFLRFEETAESKIFDNQDFGYHKITVERPLRLSFQVTPERV 409

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
            +  +         L       +L  +        + +  + +       K    K +  
Sbjct: 410 EQFGS---------LADDKLYPVLGILKDLFGDEVYQDFNLVKQKLEKALKAEGFKLAAK 460

Query: 556 FIVAFINAFGRKDPRADPVTDVNGE----WIPDTNLTEYENVPYLESIQDYFVREVSPHV 611
            +    + F  KD  A+ V     +    +  D+ L + ENVP  E IQ+YF REV PHV
Sbjct: 461 DLKLVYDTFTEKDETAEAVIKKKTKAGVVYESDSELRDTENVPLKEDIQEYFNREVLPHV 520

Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           PDA+ID         E    GYEI+F ++FY++QP R L DI A++  +EA+   +L+ +
Sbjct: 521 PDAWIDF--------EKTVRGYEISFTKYFYKFQPLRSLADIAADILALEAETEGVLKAV 572

Query: 672 AT 673
             
Sbjct: 573 IG 574


>gi|257791268|ref|YP_003181874.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257475165|gb|ACV55485.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 691

 Score =  586 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 279/693 (40%), Positives = 394/693 (56%), Gaps = 30/693 (4%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +A    N IW  A  +    +  D+ K+ILPF +LRR ECALEPTR+AV  +    G  
Sbjct: 4   KTAFDYVNEIWSIANYVRDVIRPADYNKLILPFAVLRRFECALEPTRAAVSRQAAK-GVW 62

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           + D   +  ++G+ FYN + ++LS LG+T T + L +YI  FS NA+ + + F+   T  
Sbjct: 63  DDDDPKYCALSGHCFYNVTSFTLSNLGATKTCDALMAYINGFSVNAREVLQRFEMRQTCE 122

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L++ G+LY++C  FSG +L P+TV DR+M++IYEHLI+R+G E+S+ AEDFMTP+DV  
Sbjct: 123 KLDEKGMLYEVCTRFSGFDLGPETVSDRMMTDIYEHLIQRYGEEISQDAEDFMTPKDVAR 182

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPH 243
           LATALL   +D L     G IRTLYD +CGT GF+ DA++ + +     H K P  +VP+
Sbjct: 183 LATALLFANEDTLLNADNGDIRTLYDGSCGTCGFICDALDQLDEWHDKGHFKSPTKIVPY 242

Query: 244 GQELEPETHAVCVAGMLIRRLE------SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
           GQELE  T A+  A +++R +        D   DLS  I  G TL  D F G+ F+Y L+
Sbjct: 243 GQELEDATWAMGKAALMLRNIAGGSGDVLDQMTDLSAGIMLGDTLDDDRFEGRTFNYQLT 302

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+GK+W+K+KDAV +E   G  GRFG G P I DGSMLF+ ++A K+  P  GGG+AA
Sbjct: 303 NPPYGKEWKKEKDAVLEEMGRGFDGRFGAGKPDIDDGSMLFMQNVAAKMAPPKEGGGKAA 362

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVLS SPLFNG AGSG S IRRWL   DL++ IV LPT++F+RT IATY+W+L+N K E 
Sbjct: 363 IVLSGSPLFNGDAGSGPSGIRRWLFSEDLVDCIVKLPTEIFYRTGIATYIWVLNNHKPEN 422

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+G VQLI+A++  T++R  +G KR  I +DQ   I+  YV   +   S ++    F YR
Sbjct: 423 RKGYVQLIDASEEKTALRKSQGNKRYEIGEDQAAWIVRTYVDGHDHGRSVIVPVENFMYR 482

Query: 477 RIKVLRPLRMSFILDKTGLARLEA-DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           ++   RPLR+       GL  L        KLS   ++     ++        Y    + 
Sbjct: 483 KVTTQRPLRVVIEPSVDGLDALFTLSKPMEKLSDASRAAIRSWVEKNEGASLTYSEVLAA 542

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
            ++  K+ E          +   A +  FGR+DP A P  D  G  + D  L + ENVP 
Sbjct: 543 TEKLHKAIEKPK---PQKAALADALVKVFGRRDPSATPAIDAKGNPVFDPELKDTENVPI 599

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVG---------------YEINFNRF 640
              I DY   EV P+ PDA +D+   DE   +  + G                 I+FNR+
Sbjct: 600 GMEINDYMATEVLPYAPDAVVDESVKDEPKYD-AKSGLTANPLGDGGVGVVGTTISFNRY 658

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+Y+  R  Q I  E+  +E  +  L+     
Sbjct: 659 FYKYEKPRDPQVIAKEILELEDGLGELMRGFLA 691


>gi|86130624|ref|ZP_01049224.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819299|gb|EAQ40458.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 809

 Score =  585 bits (1508), Expect = e-165,   Method: Composition-based stats.
 Identities = 222/825 (26%), Positives = 359/825 (43%), Gaps = 176/825 (21%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
              S + L +FIW  A+D L   +    +  VILP  +LRRL+  LEPT+  V ++    
Sbjct: 2   NNSSHSKLISFIWSIADDCLRDVYVRGKYRDVILPMVVLRRLDALLEPTKKEVMDEVHFQ 61

Query: 61  --AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAK 112
               G + ++ E     +GY FYNTS+++L  L  T +        N E Y+  FS N K
Sbjct: 62  KVEAGFTELENEGLKAASGYVFYNTSKWTLQLLKDTASNNQSILLANFEDYLLGFSPNVK 121

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIY 159
            I + F+  S I  +    +L  + + F+   ++                  +  M  ++
Sbjct: 122 EIVDKFNLVSQIKHMAGKDVLLDVLEKFTSSHINLTPFEKEDPEGRKLPALSNLGMGYVF 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LIR+F  E +E A +  TPR+V+ L T ++ +P           + T+YDP CG+GG 
Sbjct: 182 EELIRKFNEENNEEAGEHFTPREVIELMTHIIFEPIKDQL----PPVMTIYDPACGSGGM 237

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT++ N + D     K    +  +G+E+  ET+A+C + M+I+        +  +NI+ G
Sbjct: 238 LTESQNFIKDPEGAIKATGDVYLYGKEINDETYAICKSDMMIKG-------NSPENIRVG 290

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-------------P 326
           STLS D FTG  F + LSNPP+GK W  ++  ++   K+    RF               
Sbjct: 291 STLSTDEFTGTSFDFMLSNPPYGKSWSSEQKYIKD-GKDVIDPRFKIQLADYWGTVEDVD 349

Query: 327 GLPKISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            +P+ SDG +LFLM + +K++       G R A V + S LF G AG GES IRR+++EN
Sbjct: 350 AVPRSSDGQLLFLMEMVSKMKTLEQSPAGTRIASVHNGSSLFTGDAGGGESNIRRYIIEN 409

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
           D++EAI+ LP +LF+ T I TY+W+LSN KT  R+GKVQLI+A+DL+  +R N G K   
Sbjct: 410 DMLEAIIQLPNNLFYNTGITTYIWVLSNNKTATRKGKVQLIDASDLYKKLRKNLGNKNCE 469

Query: 444 INDDQRRQILDIY---VSRENGKF----SRMLDYRTFG---------------------- 474
                  +I ++Y   +SR+  +     S + D   FG                      
Sbjct: 470 FTKKHIDKITEVYMSALSRKRTEELPLESLVFDNSDFGYYKATVERPKRLKSQCTDARIE 529

Query: 475 -----------------------YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                                  YR +K  +   + ++  +             K     
Sbjct: 530 TLRYDRVLQEAMQYAYETYGDSVYRDVKKHQKELLEWVEKEELNLSSAHKTKLCKQDTWD 589

Query: 512 QSF-WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK------------------A 552
           +    L   K +        + +  V +    +E K  K+                   A
Sbjct: 590 KHLRQLTTAKKLQNIFGDTLYTDYNVFKKEVDDELKAQKIAIAASDKKAILNALSWYDAA 649

Query: 553 SKSFIVAFINAFGRK---------DPRAD-------PV---------------------- 574
           +   I   +   G K            AD       P                       
Sbjct: 650 AAKVIKKVVKLTGDKLTQLLEHLNCEEADLPDFGYYPCHAERSRSVSNDVPTSLSLRAPS 709

Query: 575 ----TDVNGEW---IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
               +   GE+     +++L + ENVP  ++I  YF REV PHV +A+I+          
Sbjct: 710 RSERSLKKGEYVVYETESDLRDTENVPLKDNIHSYFKREVHPHVAEAWINLD-------- 761

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
             ++GYEI+FN++FY++ P R ++++ A++  +E Q   L+ ++ 
Sbjct: 762 ATKIGYEISFNKYFYKHTPLRNIEEVTADILDLEKQSDGLIADIL 806


>gi|172040758|ref|YP_001800472.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171852062|emb|CAQ05038.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 644

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 227/676 (33%), Positives = 343/676 (50%), Gaps = 46/676 (6%)

Query: 7   SAASLA-NFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           S A L  + +W  A+  L    +  D+G  ILP T+LRRLEC LEPT+  V +       
Sbjct: 2   STAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILEPTKGEVLDLVEILQE 61

Query: 65  SNIDLESF----VKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDF 118
                E          G SFYN+S   L+ +     +    L  Y+ +FS + + +++ F
Sbjct: 62  EGYSEEMIDWEVRVRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVGAFSSSVRDVWDAF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF+  +  LE A  L+ + K+F+ I++  D +PD  M +++EH++ +      + A  F 
Sbjct: 122 DFAVKMKTLENASRLWPVVKHFATIDMSLDALPDAQMGDLFEHVMYKAFDTKGKAAGAFY 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD + L   +L   DD     + G  RT+YDPT GTGG L  A   + +     ++  
Sbjct: 182 TPRDAIRLMVDILFASDDVGLT-AEGASRTVYDPTAGTGGMLLVAARALKELNPDIEV-- 238

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             V  GQEL    +A+  A +LI+  E D        I+ G TL  DL+ G++F Y LSN
Sbjct: 239 --VLAGQELMSTGYAIGKADLLIQGGEPDA-------IRHGDTLLTDLYEGEQFEYILSN 289

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--GGGRA 356
           PPFG  WE  + +V+++ K     RF  GLP   DG MLFL H+A+KL        GGR 
Sbjct: 290 PPFGTDWEVQQQSVKEQAK-VPGSRFSHGLPSKDDGQMLFLAHVASKLMPAGPNGAGGRG 348

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V + SPLF G   SG  +IR WLLENDL++AI+ LPT++F+ T I+TY+WIL   K E
Sbjct: 349 AVVSNGSPLFTGAPESGPDKIRAWLLENDLVDAIIQLPTNMFYGTGISTYVWILDTNKEE 408

Query: 417 ERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+G VQLI+A++ W+   +  G+KRR + +  R+++L+ Y + E+ + S++L     G+
Sbjct: 409 HRKGFVQLIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAAFEDTEISKVLTPADLGF 468

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           R +KV +  R+   +    +A++   +  +   P H     D+       +         
Sbjct: 469 RDVKVTKQKRLRVAVTPEAVAQV---LEHKSAVPEHAEVLADVADVKFNDLPE------- 518

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
                    AK   VK     I A + A G  D  A+P  D  G  I D   +  E +P 
Sbjct: 519 ----ALKAAAKKRGVKMLAGMIDAVLEAVGVPDENAEPSVDRKGNPILDPAFSMTERIPL 574

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            E + ++  REV P  PD           D+E  +VGYEI F R FY+  P R L++IDA
Sbjct: 575 TEDVGEHMTREVLPFAPD--------VTWDEEAAKVGYEIPFKRVFYRPTPVRSLEEIDA 626

Query: 656 ELKGVEAQIATLLEEM 671
           ++  V  ++A    E+
Sbjct: 627 DVAAVMGRLAEKFAEV 642


>gi|154508214|ref|ZP_02043856.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797848|gb|EDN80268.1| hypothetical protein ACTODO_00708 [Actinomyces odontolyticus ATCC
           17982]
          Length = 708

 Score =  583 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 220/705 (31%), Positives = 338/705 (47%), Gaps = 59/705 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S A+  +FIW  A  L   +    +  VI+P T++RR ECAL PT+  V  ++      +
Sbjct: 22  SVANEVSFIWSIANKLRPTYSSDKYKDVIIPMTIIRRFECALAPTKDKVVAQHEKI--PS 79

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF----EDFDF 120
              ++  ++AG+SFYNTS ++L  L     N   N ++YI  FS N   +     +  DF
Sbjct: 80  YPYKAMCQIAGFSFYNTSRFTLERLLDDPDNIAANFKAYIEGFSPNVNDLLMSVEKGLDF 139

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  I +++K   LY + K FS ++L P T+    M  I+E LIR+F    +  A +  T 
Sbjct: 140 AKQIDKMDKGNRLYGVVKAFSELDLDPRTIDSIKMGYIFEELIRKFSE--NAEAGEHYTG 197

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           RD++ L  ++LL        +  G + T+ D  CGTGG L+ A N++            +
Sbjct: 198 RDIIKLMVSILLAEGCDDIFDD-GKVITILDQACGTGGMLSTAFNYIHRFNPTA----DI 252

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE  PE++A+C+A MLI+  ++D       NI+   T+  D FT  +  + + NPP
Sbjct: 253 RLFGQENNPESYAMCLAEMLIKDQDAD-------NIRFQDTMLADCFTDIKMRFVIENPP 305

Query: 301 FGKKWEKD------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           FG+ W         ++AV  EH+ G  GR+G G P   D  MLFL    +K++      G
Sbjct: 306 FGQAWGGKDAADGVENAVIAEHEKGFSGRWGAGTPGAGDMQMLFLQSAVDKMDPER---G 362

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAAI+ + SPL+ G  GSGES+IRRWLLE DLIEAI+ALP DLF+ T IATY+WILS  K
Sbjct: 363 RAAIIENGSPLYTGEVGSGESQIRRWLLEQDLIEAIIALPVDLFYNTGIATYIWILSKNK 422

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             ER+GKVQLI+A+ ++  +R    K+   I  D R  I  +Y         ++     F
Sbjct: 423 RAERKGKVQLIDASQIFHKLRKGLGKKKNEITPDDREHITRLYADFAENDLCQIYPNEEF 482

Query: 474 GYRRIKVLRPLRMSFILDKTGLARL--------------------EADITWRKLSPLHQS 513
            YR   V++PL+ S+ + +  +  L                    + ++T ++   L + 
Sbjct: 483 IYREYTVMQPLQRSYGITEERIENLINGGYLNSLFNPTKVAKLEQKEELTAKEERELAKH 542

Query: 514 FWLD-----ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
              +     I+  +   I    W       +   +  +   V      +    +     D
Sbjct: 543 RQGEPLYTAIIDTLRAAITDQVWLAPKPFTAHLKSLVRQTVV--DSKLLAKIADGLSLMD 600

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
             A+   D  G  I DT   + E VP  E I +Y  REV P++PDA         K K +
Sbjct: 601 KSAEIQRDRKGNTIYDTATKDVERVPAEEDITEYMQREVLPYIPDAKAFFEEDLSKKKPV 660

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            + G EI F R+FY Y+     +    E   +E +I+  +  +  
Sbjct: 661 VKTGAEIPFTRYFYSYETPVTAEIYAQEFMRLEQEISASIVSLFG 705


>gi|327184405|gb|AEA32850.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 695

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 220/693 (31%), Positives = 337/693 (48%), Gaps = 52/693 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           ANFIW  A  +   +    +G VI+P T++RR ECALEPT+  V  +Y           +
Sbjct: 19  ANFIWSIANKIRAAYMPDKYGDVIIPMTIIRRFECALEPTKDQVLAQYQEM--PEFPAMA 76

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           F ++ GY FYNTS++ L  L     N   N ++YI+ FS + + I +  D S  I ++  
Sbjct: 77  FYQITGYQFYNTSKFDLKELCNDPDNIAENFKAYISGFSKDVQEILKQLDMSGQIDKMND 136

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
              LY + K FS I+L  +      M  I+E+LI RF    +  A  F T RD++ L  +
Sbjct: 137 NNCLYSVVKAFSEIDLSVEHFDSIKMGYIFENLIGRFYQ--NVDAGQFYTGRDIIKLCVS 194

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LLL        +    + T+ D  CGTGG L+ A  ++        +      +GQE+  
Sbjct: 195 LLLAEGCDDITDK-NKVITVIDQACGTGGMLSTAYTYLKHYNPTADV----HLYGQEMMG 249

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---- 305
           +++AV +A MLI+    D       N +   TL +D F  ++  + L NPPFG  W    
Sbjct: 250 QSYAVGLAEMLIKNQNID-------NFKIADTLKEDCFPDRKMRFALENPPFGTPWGGKD 302

Query: 306 --EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             +  +DAV++E+  G+  R+  GLP   D  +LFL     KL       GRAAI+ + S
Sbjct: 303 AKDGQEDAVKEEYAKGKNSRWPAGLPASGDSQLLFLQSALAKL----EDNGRAAIIENGS 358

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           PLF G   SGES+IRRWLLEND +EAIVA+PTDLF+ T IATY+WILS  K+E+RRGKVQ
Sbjct: 359 PLFTGNTASGESQIRRWLLENDYLEAIVAMPTDLFYNTGIATYIWILSKNKSEKRRGKVQ 418

Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+AT+++T +R   G K+   + + R +I  +Y        S++     F YR   V +
Sbjct: 419 LIDATNIYTKLRKPLGNKKNEFSPENRAEITKLYTDFSENDLSQIHANNEFIYREYTVKQ 478

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           PL+  + + +  + ++    + +      +   L+  +  ++       A+    E++  
Sbjct: 479 PLQRDYGITEARIQQMLQSTSVKNFYDEAKVQELESSETKLKAKDAKKLAKYKKNEAVYK 538

Query: 543 NEAKTLKVKAS-----------------------KSFIVAFINAFGRKDPRADPVTDVNG 579
                LK   S                       K  I   ++   + D +A+   D  G
Sbjct: 539 QMMSILKENISNKLWMSPEEFEPVLHNLLDGIVDKKLISKIMDGLSQMDKKAEIQHDRKG 598

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNR 639
             + D    + E V   E I DY  +EV P VPDA         K K + + G EI F R
Sbjct: 599 NIVYDKETADTEIVNIDEPIDDYMQKEVLPFVPDAKAFFDEDLGKKKPVIKTGAEIPFTR 658

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +FY+YQ     + + +E+  +EA I+  ++ + 
Sbjct: 659 YFYKYQKPEDSEKLASEINKLEAAISEEMDSLF 691


>gi|303235379|ref|ZP_07321996.1| N-6 DNA Methylase [Finegoldia magna BVS033A4]
 gi|302493500|gb|EFL53289.1| N-6 DNA Methylase [Finegoldia magna BVS033A4]
          Length = 705

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 219/712 (30%), Positives = 341/712 (47%), Gaps = 60/712 (8%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT+  +      ANFIW  A  L G +    +G VI+P T++RR EC LE T+ AV EKY
Sbjct: 10  MTDDVSIDITQEANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKY 69

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                 +    +  +++G  FYNTS ++L  L     N ++N   YI SFS N   I   
Sbjct: 70  --TDNKSYPERAMYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQ 127

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +  + I ++ K   L+ + K FS ++L  +T     M  I+E+LI RF    +  A  +
Sbjct: 128 LEIKTHIKKMNKENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRFYQ--NVDAGQY 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            T RD++ +   ++            G + T+ D   GT G LT A NH+ +        
Sbjct: 186 YTGRDIIKMMVYVITAEGCDDIY-DEGKVITIADQAAGTSGMLTTAYNHLHNLNPKA--- 241

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +   GQE+  +++AV +A MLI+  +       ++N +   T  +D F   +  + L 
Sbjct: 242 -DIRLFGQEIMGQSYAVGLAEMLIKGQD-------ARNFKHADTFKEDFFEDTKMRFVLE 293

Query: 298 NPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           NPPFG  W         + AV + HK G   R+  GLP   D  +LF+    +K++    
Sbjct: 294 NPPFGMSWGGKDAKAGQEQAVLENHKRGIDSRWPAGLPSSGDAQLLFMQSAIDKMDDEH- 352

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRAAI+ + SPLFNG   SGES+IRRWLLENDLIEAI+A+PT+LF+ T IATY+WILS
Sbjct: 353 --GRAAIITNGSPLFNGGVSSGESQIRRWLLENDLIEAIIAMPTELFYNTGIATYVWILS 410

Query: 412 NRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             K +ER GK+QLI+AT+++ ++R   G KR+    + R+ I  +Y        S++ + 
Sbjct: 411 KNKRQERIGKIQLIDATEIYHTLRKSLGNKRKEFTAEDRKTITKLYSDFVENDKSKIYEN 470

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLE-------------------ADITWRKLSPLH 511
             F YR   V++PL+ S+ ++   +  LE                      T  KL+   
Sbjct: 471 EEFIYREYTVMQPLQRSYAINDERIENLETSGKLNSFYDKTKHDDILEKQETSEKLTKTE 530

Query: 512 Q----------SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
           +            +  I + + + I    +      E + ++     ++  +K+     I
Sbjct: 531 KNNLKKYTENEKTYNKIFEILKENITDKKYMSVDEFEPVVNDLL--SELSLNKTVFNNII 588

Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
           +     D  AD  TD  G  I D +  + E V   E+I DY  REV PH+PDA       
Sbjct: 589 DGLSEMDKEADIQTDKKGNVIYDKDTKDTEIVNVRENIDDYMKREVLPHIPDAKSFFEED 648

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                   + G EI F R+FY+Y+  R  +++  E   +E  +   ++E+  
Sbjct: 649 VTLKNPKIKTGAEIPFTRYFYKYEAPRPSEELAQEFLELEDIVNQKVKELFG 700


>gi|255657324|ref|ZP_05402733.1| type I restriction-modification system specificity subunit
           [Clostridium difficile QCD-23m63]
          Length = 725

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 213/727 (29%), Positives = 349/727 (48%), Gaps = 80/727 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  EL+                   +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D    +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +
Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMKE-TELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL
Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++           
Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541

Query: 503 -----------TWRKLSPLHQ----SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
                      T   +  L +      +L++L+ M        +       +        
Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVR 605
                SK      +     +D  A+  TD  G  I D  L + E++P      I ++  +
Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++        D+   ++GYEINF ++FY+ +    ++DI   +K +E +  
Sbjct: 662 EVLPYHEDAFV--------DESKTQIGYEINFTKYFYKAKKLESVEDIVCRIKELEKRSD 713

Query: 666 TLLEEMA 672
            ++E + 
Sbjct: 714 GMMETVL 720


>gi|168362838|ref|ZP_02696012.1| type I restriction-modification system specificity subunit
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|171903053|gb|EDT49342.1| type I restriction-modification system specificity subunit
           [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
          Length = 725

 Score =  582 bits (1500), Expect = e-164,   Method: Composition-based stats.
 Identities = 212/727 (29%), Positives = 348/727 (47%), Gaps = 80/727 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  EL+                   +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D    +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +
Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKSWKTDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMKE-TELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL
Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++           
Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541

Query: 503 -----------TWRKLSPLHQ----SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
                      T   +  L +      +L++L+ M        +       +        
Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVR 605
                SK      +     +D  A+  TD  G  I D  L + E++P      I ++  +
Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++        D+   ++GYEINF ++FY+ +    ++DI   +K +E +  
Sbjct: 662 EVLPYHEDAFV--------DESKTQIGYEINFTKYFYKSKKLESVEDIVCRIKELEKRSD 713

Query: 666 TLLEEMA 672
            ++  + 
Sbjct: 714 GMMATVL 720


>gi|259502614|ref|ZP_05745516.1| type I restriction-modification [Lactobacillus antri DSM 16041]
 gi|259169429|gb|EEW53924.1| type I restriction-modification [Lactobacillus antri DSM 16041]
          Length = 699

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 212/691 (30%), Positives = 341/691 (49%), Gaps = 50/691 (7%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           ANFIW  A  L G +    +G VI+P T++RR ECALEPT+  V  +Y A         +
Sbjct: 19  ANFIWSIANKLRGTYMPDKYGDVIIPMTIIRRFECALEPTKDKVLAQYEAM--PTYPARA 76

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
             K++G+ FYNTS++ L  L     N  +N +SY+A FS + + I  + D  S I +++K
Sbjct: 77  MYKISGFQFYNTSKFDLQELCNDPDNINSNFKSYLAGFSADVQEILRNLDIESNIDKMDK 136

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            G LY + K FS ++L         M  I+E+LI RF    +  A  F T RD++ L  +
Sbjct: 137 GGCLYNVVKAFSELDLSVAKFDSIKMGYIFENLIARFYQ--NVDAGQFYTGRDIIRLCVS 194

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LLL        E    + T+ D  CGTGG L+ A  ++            +   GQEL  
Sbjct: 195 LLLAEGSEDILED-NKVVTVLDQACGTGGMLSTAYTYLKHLNPT----VDVHLFGQELMG 249

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW---- 305
           +++AV +A MLI+    D       N +   TL +D F  ++  + L NPPFG  W    
Sbjct: 250 QSYAVGLAEMLIKDQNID-------NFKHADTLKEDCFPDQKMRFVLENPPFGTPWGGKD 302

Query: 306 --EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             +  +++V++E+  GE  R+  GLPK +D  +LF+    +KL    +  GRAAI+ + S
Sbjct: 303 AKQGQEESVKEEYLKGESSRWPAGLPKTNDAQLLFIQSALSKL----DDNGRAAIIENGS 358

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF G   SGES++RRWLLEND ++ IVA+PTDLF+ T +ATY+WILS  K+++R+GKVQ
Sbjct: 359 SLFTGNTASGESQVRRWLLENDYLDTIVAMPTDLFYNTELATYIWILSKNKSQKRKGKVQ 418

Query: 424 LINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
            I+AT+++  +R   GKK+   + + R QI  +Y        S++ D   F YR   V++
Sbjct: 419 FIDATNIYEKLRKPLGKKKNEFSKENREQITKLYTDFVENDISQIHDNTEFIYREYTVMQ 478

Query: 483 PLRMSFILDKTGLARLEADI-------TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           PL+ S+ + +  + ++  ++        + +L   ++      +K + +        +  
Sbjct: 479 PLQRSYAITEQRIEKMLPNLNSFFDPVKFNELQESNKKLSARDVKKLTKFKKNKPIYDQL 538

Query: 536 VKESIKSNEAKTLKVK--------------ASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
           +     +   K  K                  K  +   ++   + D  A+   D  G  
Sbjct: 539 ISILRDNISDKIYKSPESFAPVAENLLSNIIDKKLLKKVVDGLSQMDKSAEIQNDKKGNI 598

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           I D +  + E V     I+ Y  +EV P + DA         K K + + G EI F R+F
Sbjct: 599 IYDKDTADTEIVNIKTPIEQYMAKEVLPFISDAKAFFEEDLGKKKPVIKTGAEIPFTRYF 658

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           Y+YQ  + ++ +   +  +E  I+  +  + 
Sbjct: 659 YRYQMPQSVEKLQNMIDNLEQSISVEMNNLF 689


>gi|269123431|ref|YP_003306008.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112]
 gi|268314757|gb|ACZ01131.1| N-6 DNA methylase [Streptobacillus moniliformis DSM 12112]
          Length = 725

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 210/727 (28%), Positives = 350/727 (48%), Gaps = 80/727 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVTKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+                ++    + +  M  ++E +IR+F  
Sbjct: 131 QVTKMTDAGILGSVIEKFTSSELNLSPYDEKNSSGDIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRD++ L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDLIELMADITMYPIMDKIKNG---TYSIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS D  +
Sbjct: 248 AFAKENDKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDRTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNIIDRRFVRNYKEQDDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMKE-TEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E R+GK+QLINA  + T++R N GKK    ++  R  IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINANGIKTALRKNMGKKNCEFSEADREFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   L  +E ++           
Sbjct: 482 NQYLKFEENEYSKIFLNDEFGYYKVVVERPLRQAVLCNAENLKEIEEELKKIRAFSGKID 541

Query: 503 -----------TWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
                      T   +  L +S  ++  L+ +        + +    E   +   K   +
Sbjct: 542 KKILEDSFIKGTATSIKELEKSENIEAYLEVLKLMNKEEKYLDYVAFEKDFNKHLKKKNI 601

Query: 551 K---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
           K    SK      +     +D  A    D  G  I D +L + E++P  +   I+++  +
Sbjct: 602 KGASLSKFVSTGLLGNMIIRDESAVIQKDSKGNVIVDPDLRDTESIPMTFEGGIEEFIKK 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++        D+   ++GYEINF ++FY+ +    ++DI + +K +E Q  
Sbjct: 662 EVLPYHADAFV--------DESKTQIGYEINFTKYFYKAKELESVEDIVSRIKELERQSD 713

Query: 666 TLLEEMA 672
            ++  + 
Sbjct: 714 GMMASIL 720


>gi|255102541|ref|ZP_05331518.1| type I restriction-modification system specificity subunit
           [Clostridium difficile QCD-63q42]
          Length = 725

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 213/727 (29%), Positives = 349/727 (48%), Gaps = 80/727 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENVKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  EL+                   +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSNGEIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADITMYPIMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D    +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS+D  +
Sbjct: 248 DFAKENGKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVHYGSTLSEDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKSWKMDLAILGIGEDKDLKKNIIDKRFVRNYKEQNDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMKE-TELGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+W+LSNRK E R+GK+QLINA  + TS+R N GKK    ++  RR IL
Sbjct: 422 ENMFYNTGITTYIWVLSNRKEERRKGKIQLINANGIKTSLRKNMGKKNCEFSEADRRFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y+  E  ++S++     FGY ++ V RPLR + + +   +  +E ++           
Sbjct: 482 NEYLKFEENEYSKIFSNEEFGYFKVTVERPLRQAVLCNYENINEVEKELEKIGATTGKID 541

Query: 503 -----------TWRKLSPLHQ----SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
                      T   +  L +      +L++L+ M        +       +        
Sbjct: 542 KKLIAESFVKGTAGSIKELEKKENIKAYLEVLREMESSEKYLDYEAFEKAFNKNLKNKNI 601

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVR 605
                SK      +     +D  A+  TD  G  I D  L + E++P      I ++  +
Sbjct: 602 KGASFSKLVSTGLLANMIIRDEEAEVQTDSKGNLIVDPELRDTESIPMTFVGGIDEFIRQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++        D+   ++GYEINF ++FY+ +    ++DI   +K +E +  
Sbjct: 662 EVLPYHEDAFV--------DESKTQIGYEINFTKYFYKAKKLENVEDIVCRIKELEKRSD 713

Query: 666 TLLEEMA 672
            ++E + 
Sbjct: 714 GMMETVL 720


>gi|325662103|ref|ZP_08150721.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471552|gb|EGC74772.1| hypothetical protein HMPREF0490_01459 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 712

 Score =  580 bits (1494), Expect = e-163,   Method: Composition-based stats.
 Identities = 221/713 (30%), Positives = 341/713 (47%), Gaps = 67/713 (9%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++  NFIW  A  L G ++   +  VI+P  ++RR ECALEPT+  V  ++ A    N  
Sbjct: 19  STEVNFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEPTKDKVVAQFKA--NPNYP 76

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF----EDFDFSS 122
            ++  +++G+ FYNTSE++L+ L   + N   N ++Y+ SFS N + I     +  DF  
Sbjct: 77  AKAMYRISGFQFYNTSEFTLAELINDADNLAANFKAYLQSFSPNVQEIIVSAEKGLDFYK 136

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +++K   L  + K FS ++L+P T+ +  M  I+E LIRRF    +  A D  T RD
Sbjct: 137 QIDKMDKNDRLLSVVKAFSELDLNPRTIDNVKMGYIFEDLIRRFSE--NAEAGDHYTGRD 194

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           ++ L   +LL        +  G + T+ D  CGTGG L+ + N +        +      
Sbjct: 195 IIKLMVNILLAEGCDDIFDD-GKVITVLDQACGTGGMLSTSYNFIKRYNPTADV----RL 249

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE+ PE++A+C+A MLI+          ++NI    T+ KD F G +  + + NPPFG
Sbjct: 250 FGQEINPESYAICLAEMLIKGQN-------AENICYQDTMKKDRFAGTKMRFVIENPPFG 302

Query: 303 KKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             W      E  + AV  E+  G  GR+G GLP   D  MLFL    +KL+      GRA
Sbjct: 303 TPWGGKDAAEGVEKAVNDEYVKGFDGRWGAGLPGSGDMQMLFLQSAIDKLDDNF---GRA 359

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + SPLF G   SGES+IRRWLLENDLIEAI++L +DLF+ T I TY+W+LS  K  
Sbjct: 360 AIIENGSPLFTGGTTSGESQIRRWLLENDLIEAIISLSSDLFYNTGIITYIWVLSKNKRA 419

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           ER+GK+QLI+AT     +R   G KR  I  D R+ I  +Y   EN ++S++ +   F Y
Sbjct: 420 ERKGKIQLIDATSFCHKLRRVLGNKRNEITPDDRKVITKLYAEFENNEYSKIYNNEEFIY 479

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG----- 530
           R   V++P++ S+ +    +  + +  +   L    +   L+  + +  +          
Sbjct: 480 REYTVMQPMQRSYGISTVRIESMISKGSLATLYDAAKVEELEKSENLTGKEQKKLCSMKE 539

Query: 531 --------------------WAESFVKESIKSNEAKTLKV----------KASKSFIVAF 560
                               +        + +       +            +K  I   
Sbjct: 540 NYGVYEYILSRLRAESSEQIYYSPNEFIPVLTEILLQNNLPVVQSNEVVKTINKKLIERI 599

Query: 561 INAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIF 620
            +   + D  A+   D  G  I D    + E +   ESI +Y  REV P VPDA      
Sbjct: 600 ADGLSQMDKAAEIQRDKKGNIIFDKETKDTEVIKIEESIDEYMEREVLPFVPDAVAFFEE 659

Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             +  K I + G EI F R+FY+YQ       ++     +E  I+  +  +  
Sbjct: 660 RMDLKKPIIKTGAEIPFTRYFYKYQTPLSSTVLEDRFIELEKAISDQVRSIFG 712


>gi|68535974|ref|YP_250679.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263573|emb|CAI37061.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 644

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 222/676 (32%), Positives = 341/676 (50%), Gaps = 46/676 (6%)

Query: 7   SAASLA-NFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           S A L  + +W  A+  L    +  D+G  ILP T+LRRLEC L PT+  V +   +   
Sbjct: 2   STAELNQSAVWNTADKFLRSIVEPEDYGDYILPMTVLRRLECILAPTKDEVLDLVWSLQE 61

Query: 65  SNIDLESFVKVA----GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIFEDF 118
                E          G SFYN+S   L+ +     +    L  Y+ +FS + + +++ F
Sbjct: 62  EGFSDEMIDWEVQTRFGLSFYNSSRLDLTRIAQLDDHVYEALMDYVDAFSASVRDVWDAF 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF+  +  L+ A  L+ + K+F+ I++  + +PD  M +++EH++ +      + A  F 
Sbjct: 122 DFAVKMKTLDSASRLWPVVKHFATIDMSMEALPDAQMGDLFEHVMYKAFDTKGKAAGAFY 181

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRD + L   +L   DD       G  RT+YDPT GTGG L  A   + +     ++  
Sbjct: 182 TPRDAIRLMVDILFASDDVGLTAD-GASRTVYDPTAGTGGMLLVAARALKELNPDIEV-- 238

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             V  GQEL    +A+  A +LI+  E D        I+ G TL  DL+ G++F Y LSN
Sbjct: 239 --VLAGQELMSTGYAIGKADLLIQGGEPDA-------IRHGDTLLTDLYEGEQFEYILSN 289

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN--GGGRA 356
           PPFG  WE  + +V+++ K     RF  GLP   DG MLFL H+A+KL        GGR 
Sbjct: 290 PPFGMDWEVQQKSVKEQAK-VPGSRFSHGLPGKDDGQMLFLAHVASKLMPAGPNGAGGRG 348

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V + SPLF G   SG  +IR WLLE+DL++AI+ LPT++F+ T I+TY+WIL   K E
Sbjct: 349 AVVSNGSPLFTGAPESGPDKIRAWLLESDLVDAIIQLPTNMFYGTGISTYVWILDTNKEE 408

Query: 417 ERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+G VQLI+A++ W+   +  G+KRR + +  R+++L+ Y   E+ + S++L     G+
Sbjct: 409 HRKGFVQLIDASECWSVPDKGLGEKRREMKEPDRKRVLEEYAGFEDTEISKVLTPADLGF 468

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           R +KV +  R+   +    ++R+   +  +   P H     D+       +         
Sbjct: 469 RDVKVTKQKRLRVGVTPEAVSRV---LEHKSAVPEHAEVLADVADVKFNDLPE------- 518

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY 595
                    AK   VK     I   + A G  D  A+P  D  G+ I D+  +  E +P 
Sbjct: 519 ----ALKAAAKKRGVKMLAGMIDEVLEAVGVPDENAEPSVDRKGKPILDSAFSMTERIPL 574

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            E +  +  REV P  PD           D+E  +VGYEI F R FY+  P R L++IDA
Sbjct: 575 TEDVDAHMEREVLPFAPD--------VTWDEEAAKVGYEIPFKRVFYRPTPVRSLEEIDA 626

Query: 656 ELKGVEAQIATLLEEM 671
           ++  V  ++A    E+
Sbjct: 627 DVAAVMGRLAEKFAEV 642


>gi|319957036|ref|YP_004168299.1| n-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
 gi|319419440|gb|ADV46550.1| N-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
          Length = 599

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/689 (34%), Positives = 349/689 (50%), Gaps = 108/689 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT F       A+ IW  A  L GD+K +D+GKVILP T+LRRL+  L PT+  V     
Sbjct: 1   MTNFKQK----ADLIWDIAGLLRGDYKRSDYGKVILPLTVLRRLDAVLAPTKEKVLAALP 56

Query: 61  AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
                  N       K+AGY+F+N S +  + +     N   NL +YI  FS NA+ I E
Sbjct: 57  RVEKMSENAKDLYLNKIAGYNFHNRSRFDFAKIVADPNNVAMNLRNYINGFSSNAREIIE 116

Query: 117 DFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            F+F   I R++   + LLY++ K F+ +    D V    M  I+E LIR+F  + +E A
Sbjct: 117 YFNFDDQIDRMDDPKSDLLYQVVKAFAEMPF--DDVDSMQMGYIFEELIRKFAEQSNETA 174

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   LL + D  +FK   G+++TLYDP CGTGG L+   NH+       
Sbjct: 175 GEHFTPREVIELMVNLLFNSDREIFK--EGIVKTLYDPACGTGGMLSIGENHIKRLNPDA 232

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K+       GQE+ PE++A+C +  LI+            NI+ G+T + D    ++F Y
Sbjct: 233 KLE----LFGQEINPESYAICKSDTLIKGENP-------SNIKFGNTFTVDGLRDEKFDY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K    ++ E++N G  GRFG GLP+I+DGS+LFL H+ +K++     G
Sbjct: 282 MLSNPPFGVEWKKAAKTIKAEYENLGFAGRFGAGLPRINDGSLLFLQHMISKMKP---EG 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R  IV + SPLF G+AGSGES IRRW++END +EAIVALP  LF+ T IATY+W+L+N+
Sbjct: 339 SRIGIVFNGSPLFTGQAGSGESNIRRWIIENDWLEAIVALPDQLFYNTGIATYIWVLNNQ 398

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  + RGK+QLINAT         G K   + ++ +R     +                 
Sbjct: 399 KDAKCRGKIQLINAT---------GSKDEALMEEGKRD----FNRFWE------------ 433

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
                K+ R L       +  +   + +     ++ L+  F       +    Y   W  
Sbjct: 434 -----KMPRSLGDK----RKRIPTNDDERGINYITKLYGEFEEGEFVKIFPNDYFGYWRV 484

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
           +  +                             +D   + VTD  G   PD  L + EN+
Sbjct: 485 TVERPL---------------------------RDEAGNIVTDTKGRPKPDKELRDTENI 517

Query: 594 PYL----------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           P+L          +SI++YF REV PHVPDA+I        D+   ++GYEINF+++FY+
Sbjct: 518 PFLREDEEGNLVPQSIEEYFEREVLPHVPDAWI--------DESKTKIGYEINFDKYFYE 569

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           ++P R L  I A++  +E     L  ++ 
Sbjct: 570 FKPLRSLDAIRADILALEESSRELERQVL 598


>gi|260891565|ref|ZP_05902828.1| hypothetical protein GCWU000323_02780 [Leptotrichia hofstadii
           F0254]
 gi|260858673|gb|EEX73173.1| type I restriction-modification system specificity subunit
           [Leptotrichia hofstadii F0254]
          Length = 725

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 219/728 (30%), Positives = 354/728 (48%), Gaps = 82/728 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VI+P T++RR +  +E  ++ + E          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVIIPMTVIRRFDAIIESKKTNIMEVKEMAETQGW 70

Query: 68  DLESFVK-VAGYSFYNTSEYSLSTLGSTNTRNN----LESYIASFSDNAKAIFEDFDFSS 122
           D+   +    G  FYNTS + L  L     R N     E Y+  FS+N K I + FDF++
Sbjct: 71  DVAKTLDTATGLPFYNTSNFCLKDLKYETNRQNLKRSFEEYLNGFSENIKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  EL+                   +  M  ++E +IR+F  
Sbjct: 131 QLTKMTDAGILGSVIEKFTSSELNLSPYDEKNSYGEVIRKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P     K+      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADIAMYPVMDKIKDG---TYSIYDGACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LI+  ++D     S N+  GSTLS D  +
Sbjct: 248 AFAKENSKEVSIHLIGQEVNPETYAISKADLLIKGGDTD-----SNNVYYGSTLSDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDRRFVRNYKEQDDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMKE-TEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEKDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E+R+GK+QLINA+ + TS+R N GKK    ++D R+ IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEEKRKGKIQLINASGIKTSLRKNMGKKNCEFSEDNRQFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG------------------- 494
             Y++ E  ++S++     FGY ++ V RPLR + + D                      
Sbjct: 482 KQYLNFEENEYSKIFSNDEFGYYKVVVERPLRQAVLCDANNIKEIEEELEKIGVLSGAID 541

Query: 495 ---LARLEADITWRKLSPLHQSF----WLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
              LA      T   +  L +S     +L++LK +M+    Y    +F K   K  + K 
Sbjct: 542 KKVLAESFIKGTSSSMKELEKSENVNTYLEVLK-LMKSDEEYLNYAAFEKAFNKHLKKKD 600

Query: 548 LK-VKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFV 604
           +K    SK      ++    KD  A    D  G  + D+ L + E++P  +   I ++  
Sbjct: 601 IKGASLSKLASTGLLSRMIVKDEEAAIQKDSKGNVVADSELRDTESIPMTFEGGIDEFIK 660

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           +EV P+  DA++        D+   ++GYEINF ++FY+ +    +++I   +K +E Q 
Sbjct: 661 QEVLPYHADAFV--------DESKTQIGYEINFTKYFYKAKELESVEEIVNRIKELERQS 712

Query: 665 ATLLEEMA 672
             ++  + 
Sbjct: 713 DGMMASIL 720


>gi|283796107|ref|ZP_06345260.1| type I restriction-modification system methyltransferase subunit
           [Clostridium sp. M62/1]
 gi|291076321|gb|EFE13685.1| type I restriction-modification system methyltransferase subunit
           [Clostridium sp. M62/1]
          Length = 712

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 232/698 (33%), Positives = 344/698 (49%), Gaps = 57/698 (8%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A  L G +    +  VI+P  ++RR ECALE T+ AV  KY      N+      
Sbjct: 24  LVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEETKDAVVAKYKQ--NPNLPAALLC 81

Query: 74  KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKA 130
           +V+ Y FYNT+E++L  L   S +  +NL+SYI  FS N + I E    FS+ I +++K+
Sbjct: 82  QVSKYPFYNTNEFTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLKFSTQIDKMDKS 141

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             LY + K FS ++L+P  V    M  I+E +IRRF    +  A D  TPR+V+ L   +
Sbjct: 142 NRLYSVVKKFSDLDLYPAHVDSMKMGYIFEDIIRRFSE--NAEAGDHYTPREVIRLMVNV 199

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           LL           G I T+ D  CG+GG L+   + +     +      +   GQE+ PE
Sbjct: 200 LLAEGCNDLLTDEGKIATVLDAACGSGGMLSTTYDFLRRKNPY----VDVRLFGQEINPE 255

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW----- 305
           ++A+C+A MLI+  +           ++ +TL  D F  ++    + NPPFG  W     
Sbjct: 256 SYAICLADMLIKGQDVKNIM----GDEEANTLKTDCFPDQKMRLVIMNPPFGTPWGGKDA 311

Query: 306 -EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            E  +  V +E+K G  GRF  GLP   D  +LF+ H  NKL       GRAAI+ + SP
Sbjct: 312 PEGQEKKVREENKKG--GRFEHGLPGTGDAQLLFMQHAINKL---DEKNGRAAIITNGSP 366

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF+G   SGES+IRRW+LE DLIEAI+ALPT LF+ T+I  Y++ILS  K  +RRGKVQL
Sbjct: 367 LFSGGTTSGESQIRRWMLEEDLIEAIIALPTQLFYNTDIGIYIFILSRNKRPDRRGKVQL 426

Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA D+W  +R   GKKRR I+ D  ++I ++Y + E  ++ ++     F Y+   V +P
Sbjct: 427 INAVDMWKPLRKSLGKKRREIDRDSMKKITELYSNFEENQYCKIFPNEEFMYKEYAVYQP 486

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM-------MQQIYPYGWAESFV 536
           L+   +LD   + RL     +   S +      + LK M        ++   Y   + FV
Sbjct: 487 LQRRGVLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQKYLAGQQFV 546

Query: 537 KESI-----------------KSNEAKTLKVKA---SKSFIVAFINAFGRKDPRADPVTD 576
            + +                      K+L  K    S S +          D  A    D
Sbjct: 547 ADVLNILEANRSDQVFMDYGEFEKYLKSLLGKVEGMSASRLTGIAMVLAVMDKTAVVQKD 606

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG---RVGY 633
             GE I DT   + E +   +  + YF  EV PHVPDA     F  EK +      ++G 
Sbjct: 607 RKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWAYEFDPEKKESATNKEKLGA 666

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           E  F RFFY+Y+   K  ++ A+   +E  ++  +  +
Sbjct: 667 EFPFTRFFYEYKEPEKADNLLAQFMELEKSLSEKIAAL 704


>gi|259048037|ref|ZP_05738438.1| HsdM protein [Granulicatella adiacens ATCC 49175]
 gi|259035327|gb|EEW36582.1| HsdM protein [Granulicatella adiacens ATCC 49175]
          Length = 725

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 209/727 (28%), Positives = 352/727 (48%), Gaps = 80/727 (11%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++RR +  +EP ++ + +          
Sbjct: 11  NKLISFIWSVADDCLRDVYVRGKYRDVILPMTVIRRFDSIIEPEKANIMKVKEMAEKQGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  A G  FYNTS + L  L       N + N E Y+  FS+N K I + FDF++
Sbjct: 71  DVTKTLDTAVGLPFYNTSNFCLKDLKHETNRQNLKKNFEEYLNGFSENIKEILQKFDFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYEHLIRRFGS 168
            + ++ +AG+L  + + F+  EL+                   +  M  ++E +IR+F  
Sbjct: 131 QLNKMTEAGILGSVIEKFTSSELNLSPYNEINSKGKIIKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDV+ L   + + P      +      ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVIELMADIAIFPIMNKIMDG---TYSIYDAACGTLGMGTVAEERLK 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     K    +  +GQE+  ET+A+  A +LI+  ++D     S  +  GST+S D  +
Sbjct: 248 ELAQKDKKNVSIHLYGQEVSAETYAIAKADLLIKGGDTD-----SSQVYYGSTISDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GQHFDFMLSNPPYGKTWKTDLAILGSGNDKDPKKNITDIRFVRNYKEQDEFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ +P
Sbjct: 363 QLLFLLNNISKMK-NTEMGSRIVEVHNGSALFTGDAGNGASNARRFMIEEDLIEAIIQMP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E R+GK+QLINA+ + T++R N GKK    + D R  IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINASGVKTALRKNMGKKNCEFSKDDREFIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           + Y++ E  ++S++     FGY ++ V RPLR + + ++  +  +E ++           
Sbjct: 482 NQYLNFEENEYSKIFSNDEFGYYKVIVERPLRQAVVCNEKNIKEIEDELNKIGVFSGKID 541

Query: 503 -----------TWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
                      T   +  L ++  ++  L+ +        + +    E   +   K   V
Sbjct: 542 KKVLEDSFIKRTASSIKELEKTENVEAYLETLKLMKSDERYLDYVAFEKDFNKHLKKRNV 601

Query: 551 K---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVP--YLESIQDYFVR 605
           K    +K      +     +D  A    D  G  I D NL + E +P  +   I+++  +
Sbjct: 602 KGASLNKLVSTGLLANMIIRDESAVIQKDSKGNVIVDPNLKDTETIPRTFEGGIEEFIKQ 661

Query: 606 EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIA 665
           EV P+  DA++        D+   ++GYEINF ++FY+ Q    +++I   +K +E Q  
Sbjct: 662 EVLPYHVDAFV--------DESKTQIGYEINFTKYFYKAQELESVEEIVDRIKELERQSD 713

Query: 666 TLLEEMA 672
            ++  + 
Sbjct: 714 GMMASIL 720


>gi|56750497|ref|YP_171198.1| type I restriction-modification [Synechococcus elongatus PCC 6301]
 gi|81299869|ref|YP_400077.1| type I restriction-modification [Synechococcus elongatus PCC 7942]
 gi|56685456|dbj|BAD78678.1| type I restriction-modification [Synechococcus elongatus PCC 6301]
 gi|81168750|gb|ABB57090.1| type I restriction-modification [Synechococcus elongatus PCC 7942]
          Length = 675

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 229/536 (42%), Positives = 321/536 (59%), Gaps = 29/536 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L+ FIW  A+ L GD+K +D+GK+ILPFT+LRRL+C L PT++AV E+ +      + 
Sbjct: 99  QNLSAFIWSVADLLRGDYKQSDYGKIILPFTVLRRLDCVLAPTKAAVLEEKVLRESQGLA 158

Query: 69  LES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            E   +K AG +F NTS   L  L   + N   NL +YI  F+   + IF+ F+F   I 
Sbjct: 159 PEPFLLKKAGQNFCNTSPLDLKQLMGDADNIGENLRAYIQGFTPAVRDIFDSFEFHLQID 218

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RLEKAGLLY + + F+ I+LHPDTV +  M  ++E LIR+F    +E A +  TPR+V+ 
Sbjct: 219 RLEKAGLLYLVTERFAQIDLHPDTVSNAEMGLVFEELIRKFAELSNETAGEHFTPREVIR 278

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   DDA     PG++R+LYDPT GTGG L+ A  H+ +     ++    V  GQ
Sbjct: 279 LMVNLLFIEDDAALT-QPGIVRSLYDPTAGTGGMLSVAEEHLTELNPSARL----VLSGQ 333

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL PE++A+C A MLI+           +NI  G+TLS D     ++ Y LSNPPFG +W
Sbjct: 334 ELNPESYAICKADMLIKGQNI-------QNICFGNTLSDDKLPDAKYDYMLSNPPFGVEW 386

Query: 306 EKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V++E +  G  GRFGPGLP++SDGS+LFL+HL +K+     GG R  IVL+ SP
Sbjct: 387 KKIQKEVQREAEQLGYSGRFGPGLPRVSDGSLLFLLHLISKMRPASEGGSRLGIVLNGSP 446

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRR++LENDL+EAI+ALPTD+F+ T I+TY+WILSNRK   R+GKVQL
Sbjct: 447 LFTGGAGSGESEIRRYVLENDLVEAIIALPTDMFYNTGISTYIWILSNRKPASRKGKVQL 506

Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYRRI 478
           I+A+  W  +R   G KR+ ++++Q  +I  ++ + E         S++     FGYR I
Sbjct: 507 IDASGFWQKMRKSLGSKRKELSEEQIAEITRLFGNFEEADRDGKPVSKIFRNEEFGYRTI 566

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYGWAE 533
            V RP R            + A     K  P+  +   D    P+ + +  Y   E
Sbjct: 567 TVERPQR------DEAGNVVLAQRGKTKGQPVADASLRDTENVPLTEDVDTYFQRE 616


>gi|325297665|ref|YP_004257582.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
 gi|324317218|gb|ADY35109.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
          Length = 772

 Score =  573 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 210/792 (26%), Positives = 353/792 (44%), Gaps = 146/792 (18%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              S + +   IW  A+D L   F    +  VILP  +LRRL+  LEPT+  V E+    
Sbjct: 1   MDSSYSQIVALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKEDVEEEIKES 60

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
           G  NID      +   S++NTS+++L+ L S  +       +N   Y+  +S+N + +  
Sbjct: 61  GVDNIDEGVLKDITRLSYFNTSKWTLNRLKSQASDNNDILYDNFVEYLNGYSENVRDVLR 120

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLI 163
           +F++ +   +L     L  I +  +   ++                  +  M  ++E L+
Sbjct: 121 NFEYYTKARKLADNDRLLSIIERITDPRINLTDKNTIDPDGLPLPALTNVGMGTVFEELL 180

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           RRF  E +E A +  TPRD + L   L+ +P           I TLYDP CG+GG LT++
Sbjct: 181 RRFNEENNEEAGEHFTPRDAISLLAHLVFEPVKENL----PKIITLYDPACGSGGMLTES 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             ++ D G        +   G E+ PET+A+C + ++I+ ++          I  G+T++
Sbjct: 237 REYLLDLGVR---SAAIQLSGTEINPETYAICKSDLIIKGVDP-------SGIHWGNTIT 286

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PK 330
            + F+ K F Y ++NPP+GK W++DK  +  E K     RF   L             P+
Sbjct: 287 DNSFSDKSFGYMITNPPYGKSWKEDKKKIYHE-KMLLDHRFELTLTNYVGEEEVLDSTPR 345

Query: 331 ISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            SDG +LFL+   +K++       G R A + + S LF G AGSGES IRR+L+E DL+E
Sbjct: 346 TSDGQLLFLLEEVDKMKPLEFQPQGSRIASIHNGSSLFTGDAGSGESNIRRYLIEKDLVE 405

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           AI+ LP ++F+ T I+TY+W+L+N+K + R+GKVQLI+A+  +  +R     R    +  
Sbjct: 406 AIIQLPNNIFYNTGISTYVWMLTNKKKDNRKGKVQLIDASQAFEKLRKNQGSRNCTIEPY 465

Query: 449 RRQILDIYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           R  IL +Y      +        S++ D   F Y  + + RPLR+    +   +  +  D
Sbjct: 466 RTDILRVYTDFVEQEANEELKVGSKIFDDDDFRYYNVTIERPLRLRCQFNSLKIDEMLYD 525

Query: 502 ---------------------------------------ITWRKLSPL-------HQSFW 515
                                                  IT +KL+ L        +   
Sbjct: 526 SSDIEVSKWLYNTYKDRVFSGLDSEIPTIKEYLNDQDIKITDKKLNKLISAKAWKDRQRL 585

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
           +   K +M+ +    + +  +  +  +  AK LK++ S + +     A    D +A PV 
Sbjct: 586 MIAAKVLMKDMGTDVYMDYNLFSAKVNATAKVLKLETSAAELKTICRAMSVTDSKATPVV 645

Query: 576 D--------------------------------VNG---EWIPDTNLTEYENVPYLESIQ 600
                                              G   E+  D+ L + E +P  E I 
Sbjct: 646 KKEHKVNSKDVVMLLETYGVPEEKLSDYGYHSVKKGMYVEFESDSELRDSEKIPVKEDIY 705

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
           DYF REV P+V DA+I+            ++G EI+FN++FY+  P R L++ + ++  +
Sbjct: 706 DYFQREVRPYVEDAWINL--------PQTKIGCEISFNKYFYKPTPLRSLEENERDIIAL 757

Query: 661 EAQIATLLEEMA 672
           + Q    ++ + 
Sbjct: 758 DEQSQGFIKSLF 769


>gi|258545846|ref|ZP_05706080.1| type I restriction-modification system, M subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258518862|gb|EEV87721.1| type I restriction-modification system, M subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 793

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 204/807 (25%), Positives = 318/807 (39%), Gaps = 159/807 (19%)

Query: 3   EFTGSAASLANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +       +++FIW  A+  L   +    +  VILPFT+LRRL+  LE T+  V E+   
Sbjct: 7   QDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDVVLERKRF 66

Query: 62  FG--GSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIF 115
                      +    AG +FYN SE++L+ L         R++  +Y+  FS N + I 
Sbjct: 67  LDTHKVAEQDGALRMAAGQAFYNVSEFTLAKLKGSSQGQRLRDDFIAYLDGFSPNVQEIL 126

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEH 161
             F+F + I +L  + +L  +  +F   E++                 + +  M  ++E 
Sbjct: 127 TKFNFRNQIQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDVDGRIKLPALDNHGMGTVFEE 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD TCGTGG LT
Sbjct: 187 LIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVADRIESS---TYSLYDGTCGTGGMLT 243

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-- 279
            A   + +    H     +   GQE+  ET+A+C A +L++          ++NI  G  
Sbjct: 244 VAEEALHELAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENIVGGAD 298

Query: 280 -STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LP 329
            STLS D F  + F + +SNPP+GK W+ D + +  + K     RF            + 
Sbjct: 299 KSTLSNDQFRSREFDFMISNPPYGKSWKTDLERMGGK-KEFNDPRFIVSHAGNNEFKLIT 357

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + SDG ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEND  EA
Sbjct: 358 RSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWCEA 417

Query: 390 IVALPTDLFFRTNIATYLWILS----------------------------NRKTEERRGK 421
           I+ALP ++F+ T IATY+W+L+                             +  E   G 
Sbjct: 418 IIALPLNIFYNTGIATYIWMLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELSAGD 477

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQIL---------------------------- 453
           +Q I    L  +      K     D    +I                             
Sbjct: 478 IQRILDLYLGEAQETAESKWFDTEDFGYWKITVERPLRLKSQLSDERIEPLRFASGDEAL 537

Query: 454 --DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS----------------FILDKTGL 495
             +IY +     +S       F  R+  +   LR                      +  +
Sbjct: 538 RAEIYATHGEALYS------EFAKRKQAIEAWLRDEDENEDDDGEDSGDDGEATTSRKSV 591

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
                       +       +++ +   + +    + +     +      K    K    
Sbjct: 592 PAKRRKKLLDASTWQRDKGLMEVAQRAQKALGSAVFDDHNEFRARFDAALKAQGDKLGAP 651

Query: 556 FIVAFINAFGRKDPRADPVTDVNG---------------------------EWIPDTNLT 588
              A   A   +D  A PV                                E+ PD+ L 
Sbjct: 652 EKKAIYKAVSWRDEAAPPVIAKRSKLKAGEHFEPGFDGAYLETVGKDRFMVEYEPDSELR 711

Query: 589 EYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           + E VP  E   I  +F REV PH PDA+I             ++GYEI+F R+FY+  P
Sbjct: 712 DTEQVPLKEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARYFYKPVP 763

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673
            R L +I A++  +E Q   LL ++  
Sbjct: 764 LRTLAEIRADILALEQQSEGLLHKIVG 790


>gi|331084241|ref|ZP_08333346.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330401776|gb|EGG81353.1| hypothetical protein HMPREF0992_02270 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 684

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 204/707 (28%), Positives = 318/707 (44%), Gaps = 64/707 (9%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +  SL +FIW  A D L   +   D+ K+ILP  ++RR +  LEP   AV +    F
Sbjct: 2   NQSTYNSLKSFIWGIANDCLVDVYDVGDYRKIILPMFVIRRFDAVLEPKHEAVMKAKEQF 61

Query: 63  GGSNIDL--ESFVKVAGYSFYNTSEYSLSTLG----STNTRNNLESYIASFSDNAKAIFE 116
             + I     +   VA  +F N S+++L+ L         + +   Y+  FS+N + I  
Sbjct: 62  TKAGITELDAALASVAEQAFVNKSDFTLTDLKSRTNQQQLKKDFIEYLDGFSENVQVIIN 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYEHL 162
            F   + I RL +   L  + + F    ++                   +  M  ++E +
Sbjct: 122 KFHIRNEIGRLSEQDRLGLLIEKFVDPRINLSNRPVLNEDGSVKIEALDNHTMGTLFEEV 181

Query: 163 IRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           IR F  E +   A    TPRD+V L   L   P     + +      +YD  CGTGG LT
Sbjct: 182 IRMFNEETNVTDAGRHFTPRDIVELIADLAFIPVQDKIQST---TYRIYDGACGTGGMLT 238

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
               H+            +  +GQE   ET+A+  A ML++          S  I+ GST
Sbjct: 239 VGDEHIKKLAKEQGKKVSIHLYGQENADETYAIARADMLVKG-----EGKESDQIRFGST 293

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGP---------GLPKI 331
           +S D F  + F + LSNPPFG  W+ D  A     K+     RF            +P I
Sbjct: 294 ISDDKFAKEEFDFMLSNPPFGTPWKTDLKAWGIGKKDEISDSRFIINYDDNSEYSLIPDI 353

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            D  MLFL +  +K++     G R   V + S LF G+AGSG S +RR++ E DL EAI+
Sbjct: 354 GDPQMLFLANNISKMKTTTELGSRIIEVHNGSSLFTGKAGSGPSNLRRYIFEQDLCEAII 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
           A+P ++F+ T I TYLW+L+N+K E+R+GKVQLI+AT +   +R N G K   +    R 
Sbjct: 414 AIPENMFYNTGIGTYLWVLTNKKDEKRKGKVQLIDATSMKEPLRKNLGDKNCEMTQKMRE 473

Query: 451 QILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           +++++Y++ +  + ++S+      FG+ +++V RPLR+   +    L   +  +   +  
Sbjct: 474 KVMELYLAFDKADSEYSKAFLNEEFGFYQVEVNRPLRLRVNVSDEALEEFKNSVEDDEFY 533

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                        +M                     AK   +K +K    A    F   D
Sbjct: 534 DF-----------LMTNEKDTESTNFNSFIGKLEKSAKKAGLKWTKKRENAIRKYFTTTD 582

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
             AD V D  G   PD NL + E VP      I  +F  EV P+V DA+I++        
Sbjct: 583 ENADVVLDKKGNIEPDNNLKDTEQVPLLYDGGITGFFENEVKPYVEDAWINED------- 635

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
               +GYE++F ++FY+    R L DI A+++ +E     LL  +  
Sbjct: 636 -SAVIGYELSFTKYFYKPVQLRDLSDIIADIRAIEQSTDGLLASIIG 681


>gi|144900419|emb|CAM77283.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 580

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 220/548 (40%), Positives = 325/548 (59%), Gaps = 24/548 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +++G++ILPFT+LRRL+C LEPT++AV  +        
Sbjct: 2   NQQSLSAFIWSVADLLRGDYKQSEYGRIILPFTVLRRLDCVLEPTKAAVLAELADKQAQG 61

Query: 67  IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E   ++ AG SF+NTS  ++  L     N R NL SY+ +FS   + +FE F+F S 
Sbjct: 62  LNPEPFLLRKAGQSFFNTSPLNMKKLMGDQDNIRENLHSYVNAFSPAVRDVFERFEFDSM 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL K+GLLY++ + F+ I+LHPD V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKSGLLYQVTEKFAQIDLHPDVVDNHQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD +    PG++RT+YDPT GTGG L+ A  ++A+     ++       
Sbjct: 182 IRLMVNLLFIEDDEVLS-KPGVVRTIYDPTAGTGGMLSIAGEYLAEHNPQARL----TVF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         +I  G+TLS D    K F Y LSNPPFG 
Sbjct: 237 GQELNAESYAICKADMLIKGQDV-------ASIAFGNTLSDDGHPHKTFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  + KEH+  G  GRFGPGLP++SDGSMLFL+HL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKVEKEIRKEHESQGFNGRFGPGLPRVSDGSMLFLLHLISKMRPIADGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WI+SNRK   R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIIGLPTDMFYNTGISTYVWIVSNRKPAHRKGKV 409

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476
           QLI+A+ +W  +R   G KR+ +++    ++  ++      +      SR+ D   FGYR
Sbjct: 410 QLIDASGMWQKMRKSLGSKRKELSESHIDEVTRLFGQFLESEQDGKPISRIFDNTAFGYR 469

Query: 477 RIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            I V RP R        G+   +        KL         + ++   ++      A++
Sbjct: 470 TITVERPERDDAGKIVVGVKGKQKGKPQADAKLRDTENVPLSEDVEAYFKREVLPHAADA 529

Query: 535 FVKESIKS 542
           ++      
Sbjct: 530 WIDHEKTK 537


>gi|296328650|ref|ZP_06871167.1| type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154249|gb|EFG95050.1| type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 725

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 210/726 (28%), Positives = 348/726 (47%), Gaps = 79/726 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 11  NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           D+   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 71  DIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                   +  M  ++E +IR+F  
Sbjct: 131 QLTKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 248 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            LP +SDG
Sbjct: 303 GEHFDFMLSNPPYGKTWKTDLAVLGVGSDKDLKKNIIDKRFVTSYKEQEDFRMLPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK E R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEERRKGKIQLINASELKTPLRKNLGKKNCEFSKENRKIIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 482 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELENIGFNSKINK 541

Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
                T+ K S             L  L+ +        + +    E + + + K   +K
Sbjct: 542 ANLEGTFVKNSATVVKELEKTDNILAYLELLKDMKKDDKYLDFEEFEKLFNKKLKKYGLK 601

Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606
               SK      +     +D  A    D  G  + D  L + E VP+     I+++  +E
Sbjct: 602 AASLSKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 661

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++        D+   ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 662 VLPYHNDAFV--------DETKTQIGYEINFTKYFYKAKELENVETIVARIKELEKESDG 713

Query: 667 LLEEMA 672
           +++ + 
Sbjct: 714 MMKNIL 719


>gi|291540899|emb|CBL14010.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 710

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 232/698 (33%), Positives = 341/698 (48%), Gaps = 57/698 (8%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A  L G +    +  VI+P  ++RR ECALE T+ AV  K+      N+      
Sbjct: 24  LVWSIANSLRGAYTSDKYKDVIIPMVIIRRFECALEATKDAVVAKHKQ--NPNLPAALLC 81

Query: 74  KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKA 130
           +V+ Y FYN SEY+L  L   S +  +NL+SYI  FS N + I E    FS+ I +++K+
Sbjct: 82  QVSKYPFYNYSEYTLKRLLDDSDSIASNLKSYIEGFSANIQLILEKLLKFSTQIDKMDKS 141

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             LY + K FS ++L+P  V    M  I+E +IRRF    +  A D  TPR+V+ L   +
Sbjct: 142 NRLYSVVKKFSELDLYPTHVDSMKMGYIFEDIIRRFSE--NAEAGDHYTPREVIRLMVNV 199

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           LL           G I T+ D  CG+GG L+   + +     +      +   GQE+ PE
Sbjct: 200 LLAEGCNDLLTDEGKIATVLDAACGSGGMLSTTYDFLRRKNPY----VDVRLFGQEINPE 255

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW----- 305
           ++A+C+A MLI+  +           ++ +TL  D F  ++    + NPPFG  W     
Sbjct: 256 SYAICLADMLIKGQDVKNIM----GDEEANTLKTDCFPDQKMRLVIMNPPFGTPWGGKDA 311

Query: 306 -EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            E  +  V +E+K G  GRF  GLP   D  +LF+ H  NKL       GRAAI+ + SP
Sbjct: 312 PEGQEKKVREENKKG--GRFEHGLPGTGDAQLLFMQHAINKL---DEKNGRAAIITNGSP 366

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF+G   SGES+IRRW+L+ DLIEAI+ALPT LF+ T+I  Y++ILS  K  +RRGKVQL
Sbjct: 367 LFSGGTTSGESQIRRWMLKEDLIEAIIALPTQLFYNTDIGIYIFILSRNKRPDRRGKVQL 426

Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
           INA D+W  +R   GKKRR I+ D   +I ++Y + E  K+ ++     F Y+   V +P
Sbjct: 427 INAVDMWKPLRKSLGKKRREIDRDSMVKITELYSNFEENKYCKIFPNEEFMYKEYAVYQP 486

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM-------MQQIYPYGWAESFV 536
           L+   +LD   + RL     +   S +      + LK M        ++   Y   + FV
Sbjct: 487 LQRRGMLDAESIERLRTSSYFTSNSSIFNETDFEQLKEMNPRSAADEKKYQKYLAGQQFV 546

Query: 537 KESI-----------------KSNEAKTLKVKA---SKSFIVAFINAFGRKDPRADPVTD 576
            + +                      K+L  K    S S +          D  A    D
Sbjct: 547 VDVLTILEANRSDQMFMDYGEFEKYLKSLLGKVEGMSASRLTGIAMVLAVMDKTAVVQKD 606

Query: 577 VNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG---RVGY 633
             GE I DT   + E +   +  + YF  EV PHVPDA     F  EK +      ++G 
Sbjct: 607 RKGEIIKDTTTKDTEIIKLTQDPEKYFEAEVYPHVPDAIWVYEFDPEKKESPTNKEKLGA 666

Query: 634 EINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           E  F RFFY+Y+   K  D+  +   +E  ++  +  +
Sbjct: 667 EFPFTRFFYEYKEPEKADDLLVQFMELEKSLSEKIAAL 704


>gi|149280203|ref|ZP_01886326.1| type I restriction-modification system methyltransferase subunit
           [Pedobacter sp. BAL39]
 gi|149229040|gb|EDM34436.1| type I restriction-modification system methyltransferase subunit
           [Pedobacter sp. BAL39]
          Length = 633

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 223/661 (33%), Positives = 339/661 (51%), Gaps = 60/661 (9%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFG-------GSNIDLESFVKVAGYSFYNTSEYSLST 90
            T+LRR +  LE ++S V +++ +           +I      K+ G  FYNTS ++   
Sbjct: 1   MTVLRRFDSVLENSKSDVLQEFESLKVRYKGEIPPSILSSKLEKITGQKFYNTSPFTFEK 60

Query: 91  LG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           L     +   +L SYI  FS N + IFE FDF   I  +  A +LY I   F+ + LHP 
Sbjct: 61  LKGAPDSIAQDLVSYINGFSPNVRRIFEYFDFEKEIFAMNDANILYLIVSEFAKVNLHPS 120

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            V +R M  I+E+LIRRF    +E A D  TPR+++ L   LL   DD  F      +R 
Sbjct: 121 LVSNRDMGLIFENLIRRFNELANETAGDHFTPREIIKLMVNLLFV-DDDKFLRDKYHLRK 179

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DPTCGTGG L++A N++    S   +      +GQE     +A   + +LI+   SD 
Sbjct: 180 ILDPTCGTGGMLSEAKNYLKQNNSDIILLT----YGQEYNKRAYATAASDLLIKGRSSDK 235

Query: 269 RR---DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                     I+ G TL++D F    F Y ++NPPFG  W+K K  +++     + GRF 
Sbjct: 236 VGKYEQAEGEIKFGDTLTEDQFEDDTFDYLIANPPFGVDWKKQKPQIDR----DKTGRFE 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNG----GGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            GLP+++DG++LFL H+ +K E         G R AIV S SP+F+G AGSGES+IR+W+
Sbjct: 292 AGLPRVNDGALLFLQHMISKFEPYEPKNKKFGSRLAIVFSGSPMFSGGAGSGESDIRKWI 351

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKK 440
           +END +E I+ALP  +F+ T I TY+W+L+NRK++ R+GK+QL +A + +  +R  +G K
Sbjct: 352 IENDWLEGIIALPEQMFYNTGINTYIWVLTNRKSKNRKGKIQLFDAREFYIQMRKSQGSK 411

Query: 441 RRI-------------INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
           RR              +  +Q  +I+  Y   +N   +++ D   FG+ R+ V RPLR+ 
Sbjct: 412 RRKIGEGEVDDGIIHVMEPNQIAEIITEYGQFDNTTNAKLFDNEDFGFTRVTVERPLRLK 471

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
           + +                         LD ++ + +++      +      +  +  K 
Sbjct: 472 YQMTAERKLAFLDACPH----------LLDDVQTIDKKLGQEILMDWNK---VLKDIKKI 518

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREV 607
            + K S   +V F N F  KDP A  V     ++  D +L E+ENVP    I  YF  EV
Sbjct: 519 SEQKWSARELVIFRNVFTDKDPEAAKVQKGKNDFEADADLREFENVPLKIDIDTYFKNEV 578

Query: 608 SPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATL 667
            P  PDA+         D+   +VGYEINFNR+F++   +R L+ I+ EL  +E +I  L
Sbjct: 579 LPFAPDAW--------TDRSKDKVGYEINFNRYFFKNAENRSLKVINKELSEIEKEILEL 630

Query: 668 L 668
           L
Sbjct: 631 L 631


>gi|315638762|ref|ZP_07893935.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481171|gb|EFU71802.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 640

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 210/697 (30%), Positives = 340/697 (48%), Gaps = 93/697 (13%)

Query: 7   SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
               + +FIW  A+DL    +    +  VILP T+LRRL+  LEPT+  V E Y      
Sbjct: 5   QFQPIISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDI 64

Query: 66  NIDL---ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +    +     +  +FYN S ++L  L     N R N E+Y+  FS N K I   F F
Sbjct: 65  ADEDTLKDLLCDASKSTFYNHSNFTLKKLLNDPKNIRINFENYLDGFSGNIKDIISKFKF 124

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRF 166
            + +  L++A +LY + + F   +++                   +  M  ++E LIR+F
Sbjct: 125 RNQLDTLDEAKILYGVIERFCSPKINLSMHDIKNDKGEILHKGLSNLGMGYVFEELIRKF 184

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+++ L T L+  P     ++      ++YD  CG+GG LT++   
Sbjct: 185 NEENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKG---AFSIYDNACGSGGMLTESKEF 241

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D     +    +  +GQE+ PET+A+C A MLI+    D       NI+ GSTLS+D 
Sbjct: 242 IIDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDK 294

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG----ELGRFGPGLPKISDGSMLFLMHL 342
             G++F + L+NPP+GK WEKD+  +    K G       RF  G+   SDG M+FL+++
Sbjct: 295 LGGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDARFQAGITSKSDGQMMFLLNM 354

Query: 343 ANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +K++ P      G R A V + S LFN    SG   IR++++END +EAI+ALPT++F+
Sbjct: 355 LSKMKKPKENNGLGSRIASVHNGSSLFNSD--SGMVAIRKYIMENDFLEAIIALPTNMFY 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456
            T I T++WIL+N KT+ ++GKVQLINAT    +T ++   G+K+  +      +I +++
Sbjct: 413 NTGIPTFIWILTNNKTKAKKGKVQLINATKEAYYTKMKKSLGQKQNEMTKTHIDKITELF 472

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           ++       ++ +   FGY +I + RP  +  +L+      LE            +   +
Sbjct: 473 LTNIENDDCKIYNNDEFGYTKITIERPKSIEILLNDEKFQALEQ-----------KDELV 521

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
             LK +      +   E F+           L VK  K+     I               
Sbjct: 522 SKLKELEANPQDFTSKEDFINF---------LDVKLKKAEENLLI--------------- 557

Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                  D++ T   E +P  + IQ Y+  EV P+VP+++I              +GYEI
Sbjct: 558 -------DSDKTNNTEKIPLTQDIQSYYENEVKPYVPNSWIAWESKA--------IGYEI 602

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            FN++FY Y P R L+ ID +L+ +E +   LL+++ 
Sbjct: 603 LFNKYFYTYTPPRSLESIDKDLQDLEQETQDLLKQIL 639


>gi|120601538|ref|YP_965938.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
 gi|120561767|gb|ABM27511.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
          Length = 580

 Score =  567 bits (1462), Expect = e-159,   Method: Composition-based stats.
 Identities = 232/538 (43%), Positives = 319/538 (59%), Gaps = 29/538 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +++G+VILPFT+LRRL+  LE T+ AV E+  +     
Sbjct: 2   NQQSLSAFIWSVADLLRGDYKQSEYGRVILPFTVLRRLDSVLESTKVAVLEELESRQKLG 61

Query: 67  IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           I  +   ++V+G SF+NTS   +  L     +   NL SY+  FS   + IFE F+F + 
Sbjct: 62  IAPDPFLLRVSGQSFFNTSPLDMKKLIGDQDHIGENLYSYLNGFSPEVRDIFERFEFHAQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL KAGLLY++ + F+ + LHPD V +  M  I+E LIR+F    +E A +  TPR+V
Sbjct: 122 IDRLNKAGLLYQVAERFAQVNLHPDEVDNHQMGLIFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DD +    PG++RT+YDPT GTGG L+ A  ++ D     ++       
Sbjct: 182 IRLMVNLIFIEDDDILS-KPGVVRTIYDPTAGTGGMLSIAGEYLDDHNPDARL----TMS 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         NI  G+TLS D   GK F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------SNITFGNTLSDDGHAGKHFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V KEH+  G  GRFGPGLP+ISDGSMLFL+HL +K+     GG R  IVL+ 
Sbjct: 290 EWKKVEKEVRKEHEQQGFNGRFGPGLPRISDGSMLFLLHLISKMRPAAEGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T I+TY+WI+SNRK   R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGISTYVWIVSNRKAAHRKGKV 409

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476
           QLI+A+ +W  +R   G KR+ ++DD   +I+ +Y      K      SR+ +   FGYR
Sbjct: 410 QLIDASAMWQKMRKSLGSKRKELSDDHISEIVRLYGEFAEAKLDGKPVSRIFNSSDFGYR 469

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYGWAE 533
            I V RP R            +       K  P+  S   D    P+ + +  Y   E
Sbjct: 470 TITVERPTR------DEAGNIMLGQRGKAKGKPVPDSKLRDTENVPLHEDVEAYFKRE 521


>gi|288986937|ref|YP_003456900.1| N-6 DNA methylase [Allochromatium vinosum DSM 180]
 gi|288898316|gb|ADC64150.1| N-6 DNA methylase [Allochromatium vinosum DSM 180]
          Length = 580

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 219/489 (44%), Positives = 306/489 (62%), Gaps = 22/489 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L+  IW  A+ L GD+K +D+GKVILPFT+LRRL+C LE T+ AV  +  A     
Sbjct: 2   NQTNLSALIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLESTKDAVLAEEKAKRQMG 61

Query: 67  IDLE-SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E   ++V+G SFYN S   +  L     + + NL SY+  FSD+ + IFE FD  + 
Sbjct: 62  VNPELFLLRVSGQSFYNVSPLDMKKLLGDPDHIKANLLSYLHGFSDDVRDIFEQFDVQTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL K  LLY++ + F+ ++LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 IDRLAKTNLLYQVTERFAQVDLHPNRVSNSQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DDA+    PG++RTLYDPT GTGG L+ A  ++ +     ++       
Sbjct: 182 IRLMVNLLFIEDDAVLA-KPGVVRTLYDPTAGTGGMLSVAGEYLEEHNPEARL----TMF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         NI  G+T S+D    + F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------ANIVFGNTFSEDGHPQRTFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + A+ +EH+  G  GRFGPGLP++SDGS+LFL+HL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKVEKAIRQEHETLGFSGRFGPGLPRVSDGSLLFLLHLISKMRPAIDGGSRLGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T I+TY+WILSNRK E RRG V
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGISTYVWILSNRKPEHRRGLV 409

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSREN-----GKFSRMLDYRTFGYR 476
           QLI+A+ LW  +R   G KR+ ++D    +I  ++             SR+     FGYR
Sbjct: 410 QLIDASGLWQKMRKSLGSKRKELSDAHIAEITRLFGECREAYDGKKPISRLFKNSDFGYR 469

Query: 477 RIKVLRPLR 485
            I V RPLR
Sbjct: 470 TITVERPLR 478


>gi|149373159|ref|ZP_01892028.1| type I restriction-modification [unidentified eubacterium SCB49]
 gi|149354261|gb|EDM42831.1| type I restriction-modification [unidentified eubacterium SCB49]
          Length = 600

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 226/680 (33%), Positives = 355/680 (52%), Gaps = 109/680 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M  F       A+ IW+ A  L GD+K +D+GKVILP T+LRRL+C L P +  V +   
Sbjct: 1   MNNFKEK----ADKIWEVANLLRGDYKRSDYGKVILPMTVLRRLDCVLAPKKQLVLDTLP 56

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIF 115
           K     G     +     AG +F+N S++    +     N  +NL +YI  FS +A+ I 
Sbjct: 57  KVEKLEGETAKDKVLNATAGMNFHNRSKFDFDKIIADPNNVASNLRNYINGFSTSAREII 116

Query: 116 EDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           E F+F   I R++   A +L+++ K F GI    +++    M  ++E LIRRF  + +E 
Sbjct: 117 EYFNFDDQIDRMDDPKADILFRVVKAFQGI--KLESMDSMEMGYVFEDLIRRFAEQSNET 174

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +  TPR+V+ L   +L + D  +     G+++TLYDP CGTGG L+    HV +   +
Sbjct: 175 AGEHFTPREVIKLMVNMLFNEDSEILT-KEGIVKTLYDPACGTGGMLSVGEQHVKELNPN 233

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            ++       GQE+ PE++A+C + MLI+            N++ G+T + D    ++F 
Sbjct: 234 AELK----VFGQEINPESYAICKSDMLIKGQNP-------SNVKFGNTFTVDGLEDEQFD 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y LSNPPFG  W+K +  ++ EH+N G  GRFG GLP+I+DGS+LFL H+ +K++     
Sbjct: 283 YMLSNPPFGVDWKKAQKIIKAEHENKGMQGRFGAGLPRINDGSLLFLQHMISKMKPS--- 339

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R AIV + SPLF+G AGSGESEIR+W++END +EAIVA+P  LF+ T I+TY+W+++N
Sbjct: 340 GTRIAIVFNGSPLFSGSAGSGESEIRKWIIENDWLEAIVAMPDQLFYNTGISTYVWLVNN 399

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           +K E+R+GKVQLINAT         G K   +  D++  +   +   +            
Sbjct: 400 KKEEKRKGKVQLINAT---------GTKDEELIADEKLDVNRFWKKMDKS---------- 440

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
            G +R ++        I   + L     +  + K+ P                   +G+ 
Sbjct: 441 LGSKRKEIPENGNSKGIGFVSQLYGNFEENEFSKILPNE----------------YFGYW 484

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
              V++ +K                          D +   V    G+   D+ L +YEN
Sbjct: 485 RVTVEQPLK--------------------------DEKGQIV-KSKGKPKADSKLRDYEN 517

Query: 593 VPYL----------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
           +P+L          ++I  YF REV+PH+P+A+I        D++  ++GYEINF ++FY
Sbjct: 518 IPFLRTEKDGSLVPQTISAYFEREVTPHLPEAWI--------DEKKTKIGYEINFTKYFY 569

Query: 643 QYQPSRKLQDIDAELKGVEA 662
           +++P R L DI A++  +E 
Sbjct: 570 EFKPLRSLTDIKADILALEN 589


>gi|34762433|ref|ZP_00143433.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27887901|gb|EAA24969.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 722

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 206/726 (28%), Positives = 349/726 (48%), Gaps = 79/726 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 8   NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 67

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 68  NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 127

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                   +  M  ++E +IR+F  
Sbjct: 128 QLTKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 188 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 244

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 245 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 299

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 300 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 359

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 360 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 418

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 419 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 478

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 479 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 538

Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
                T+ K S             L  L+ +        + +    E + + + K  ++K
Sbjct: 539 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 598

Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606
               +K      +     +D  A    D  G  + D  L + E VP+     I+++  +E
Sbjct: 599 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGDIEEFIKKE 658

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++        D+   ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 659 VLPYHDDAFV--------DESKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 710

Query: 667 LLEEMA 672
           +++ + 
Sbjct: 711 MMKNIL 716


>gi|226940440|ref|YP_002795514.1| HsdM [Laribacter hongkongensis HLHK9]
 gi|226715367|gb|ACO74505.1| HsdM [Laribacter hongkongensis HLHK9]
          Length = 613

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 225/570 (39%), Positives = 313/570 (54%), Gaps = 60/570 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + ++L+ FIW  A+ L GD+K +++GKVILPFT+LRRL+C L  T+ AV  +      + 
Sbjct: 2   NPSALSAFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLADTKPAVLAELQLRSDAG 61

Query: 67  IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E   ++ AG SFYNTS   LS L     + R NL +YI  FS  A+ IFE FDF + 
Sbjct: 62  VNPEPFLLRKAGQSFYNTSPLDLSKLLGDQDHIRENLYAYIQGFSPAARDIFERFDFFTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KAGLLY + + F+ I+LHP +V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKAGLLYLVTEKFANIDLHPASVDNASMGLVFEELIRKFAEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD +      ++RTLYDPT GTGG L+ A   +A+     ++       
Sbjct: 182 IRLMVNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVAGEFLAEHNPQARL----TLF 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +         NI  G+TLS D    ++F Y LSNPPFG 
Sbjct: 238 GQELNDESYAICKADMLIKGQDV-------GNIVAGNTLSDDGHGARKFDYMLSNPPFGV 290

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K + AV  EH+  G  GRFGPGLP++SDGSMLFLMHL +K+     GG R  IVL+ 
Sbjct: 291 EWKKVEKAVRDEHERKGFDGRFGPGLPRVSDGSMLFLMHLLSKMRPASEGGCRFGIVLNG 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAI+ LPTD+F+ T IATY+W+LSN+K  +R G+V
Sbjct: 351 SPLFTGGAGSGESEIRRYVLENDLVEAIIGLPTDMFYNTGIATYIWVLSNKKPADRAGQV 410

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK------------------ 463
           QLI+A   W  +R   G KR+ ++D+    +  ++      +                  
Sbjct: 411 QLIDAGSFWQKMRKSLGSKRKEMSDEHIATVTRLFGDFTEAEMVTVLDAAGVPQGEPVLV 470

Query: 464 -------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
                               +R+ D   FGY  I V RP R            +      
Sbjct: 471 TSTDPQPVAPEGGRLKRVPIARIFDNADFGYTTITVERPQR------DEAGNVVLGVKGK 524

Query: 505 RKLSPLHQSFWLDILK-PMMQQIYPYGWAE 533
           +K  P   +   D    P+   I  Y   E
Sbjct: 525 QKGKPQPDTSLRDTENVPLKDDIDAYFQRE 554


>gi|288928858|ref|ZP_06422704.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329842|gb|EFC68427.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 682

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 206/712 (28%), Positives = 323/712 (45%), Gaps = 80/712 (11%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
               +L  FIW  A D L   F   D+ K+ILP  +LRRL+  LEPT   V +       
Sbjct: 4   SQYNTLFTFIWNIANDVLVQAFNKGDYKKIILPMMVLRRLDILLEPTHQQVLQLKQQLTE 63

Query: 65  SNIDL----ESFVKVAGYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFE 116
             +D        ++  G ++ NTS +++ TL         + N   Y+  FS + + I E
Sbjct: 64  QGVDETQQESMLIRRTGLAYCNTSRFTMKTLRGETNPVRLKQNFLEYLDGFSKDVQDIIE 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP--------------DTVPDRVMSNIYEHL 162
            F     +  L   G L +I + F+  E++                 V +  M  ++E L
Sbjct: 124 KFKLKQQVDNLSDTGRLGRIIEKFTDAEINLGKDPVLDAEGNERLPGVDNHTMGTLFEQL 183

Query: 163 IRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           +R+F    S   A +  TPRD V L   + + P     +       T+YD  CGTGG L+
Sbjct: 184 LRKFNEANSVTEAGEHFTPRDYVALLADIAVLPVANKLRNG---TYTIYDGACGTGGILS 240

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR----RDLSKNIQ 277
            A   +AD     +    +  +GQE++PET+A C A +++  + +           +   
Sbjct: 241 IAEQRIADIAKEQRKRIKISLYGQEMQPETYATCKADLMLSSITNSFAYLNAGVRRERFF 300

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV---EKEHKNGELGRFGP-------- 326
            GST+S D   G +F +C+SNPPFG  W+ D  A    + E ++    RF          
Sbjct: 301 CGSTISNDGHPGMKFDFCISNPPFGTPWKTDLQAWGLKDNEKQHITDPRFVLPQGYDPHN 360

Query: 327 ---GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               +P + D  MLFL +  ++++     G R   V + S LF G AG GES +RR ++E
Sbjct: 361 GLRFVPDVGDSQMLFLANNISRMKNDTELGTRIVEVHNGSSLFTGNAGGGESNLRRHIIE 420

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRR 442
           ND +EAI+A+P   F+ T I T++W+++NRK   R GKVQLI+ATD+ T +R N G+K  
Sbjct: 421 NDWLEAIIAMPEKDFYNTGIGTFIWVVTNRKEPRRAGKVQLIDATDIKTPLRKNLGEKNC 480

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
             N+  R+QI+ +    E    S++     FGY  IKV RPLR+  +         ++DI
Sbjct: 481 ETNETDRQQIMQLLNRFEETPQSKIFANEEFGYWEIKVDRPLRLRVLP--------QSDI 532

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           T  KL+   Q      ++ +        W           +       K +K+       
Sbjct: 533 TAGKLTSKEQEACRAAMQAVPNDTPLNNW-----------DAYAAALGKLTKTVKNKLRA 581

Query: 563 AFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIF 620
                DP  +PV         D  L + E VP      I+ +  REV P+ PDAY+ +  
Sbjct: 582 LITVPDPSCEPVAG-----EADRALRDTEQVPLTYPGGIEAFMQREVLPYAPDAYVAEDE 636

Query: 621 IDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
                    +V YE++F ++FY+    R + DI A++K +E +   LL ++ 
Sbjct: 637 --------TKVVYELSFTKYFYKPVELRPIADIKADIKAIETETDGLLADIL 680


>gi|256845105|ref|ZP_05550563.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294785607|ref|ZP_06750895.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
 gi|256718664|gb|EEU32219.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294487321|gb|EFG34683.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
          Length = 725

 Score =  563 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 206/726 (28%), Positives = 349/726 (48%), Gaps = 79/726 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 11  NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 70

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 71  NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 130

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                   +  M  ++E +IR+F  
Sbjct: 131 QLIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 190

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 191 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 247

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 248 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 302

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 303 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 362

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 363 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 421

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 422 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 481

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 482 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 541

Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
                T+ K S             L  L+ +        + +    E + + + K  ++K
Sbjct: 542 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 601

Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606
               +K      +     +D  A    D  G  + D  L + E VP+     I+++  +E
Sbjct: 602 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 661

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++        D+   ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 662 VLPYHDDAFV--------DESKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 713

Query: 667 LLEEMA 672
           +++ + 
Sbjct: 714 MMKNIL 719


>gi|237741777|ref|ZP_04572258.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
 gi|229429425|gb|EEO39637.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 4_1_13]
          Length = 722

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 206/726 (28%), Positives = 349/726 (48%), Gaps = 79/726 (10%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             L +FIW  A+D L   +    +  VILP T++ R +  ++  ++ + +       S  
Sbjct: 8   NKLVSFIWSVADDCLRDVYVRGKYRDVILPMTIIARFDAIIDAEKTNILQTKEWAESSGW 67

Query: 68  DLESFVKVA-GYSFYNTSEYSLSTLGST----NTRNNLESYIASFSDNAKAIFEDFDFSS 122
           ++   +  +    FYN S++ L  L S     N + N E Y+  FS+N K I E F+F++
Sbjct: 68  NIHKTLDTSIDLPFYNISKFRLKDLKSETNSQNLKKNFEEYLDGFSNNIKEILEKFEFNN 127

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRFGS 168
            + ++  AG+L  + + F+  +L+                   +  M  ++E +IR+F  
Sbjct: 128 QLIKMTNAGILGSVIEKFTSSDLNLSPYDEKNSYGIVVKKGLDNHAMGTLFEEIIRKFNE 187

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E +E A +  TPRDVV L   + + P     K       ++YD  CGT G  T A   + 
Sbjct: 188 ENNEEAGEHFTPRDVVELMADIAVVPVMNKIKNG---TYSIYDGACGTFGMATIAEERLQ 244

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +     +   GQE+ PET+A+  A +LIR  ++     +S N+  GSTLS D  +
Sbjct: 245 TLAKKNNKNVSIHLIGQEVNPETYAISKADLLIRGGDT-----VSNNVFYGSTLSDDKTS 299

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAV-----EKEHKNGELGRF---------GPGLPKISDG 334
           G+ F + LSNPP+GK W+ D   +     +   KN    RF            +P +SDG
Sbjct: 300 GEHFDFMLSNPPYGKTWKTDLSILGIGSDKDLKKNIIDKRFVTSYKEQEDFRMIPDVSDG 359

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL++  +K++     G R   V + S LF G AG+G S  RR+++E DLIEAI+ LP
Sbjct: 360 QLLFLLNNISKMK-DTELGSRIIEVHNGSALFTGDAGNGASNARRYMIEEDLIEAIIQLP 418

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQIL 453
            ++F+ T I TY+WILSNRK + R+GK+QLINA++L T +R N GKK    + + R+ IL
Sbjct: 419 ENMFYNTGITTYIWILSNRKEKRRKGKIQLINASELKTPLRKNLGKKNSEFSKENRKIIL 478

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI----------- 502
           D Y++ +  + S++     F Y ++ V RPLR + I +   +  +E ++           
Sbjct: 479 DTYLNFKENEISKIFSNEEFAYYKVTVDRPLRQAIICNDEKIKEIEKELEKIGFNSKINK 538

Query: 503 -----TWRKLSP------LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
                T+ K S             L  L+ +        + +    E + + + K  ++K
Sbjct: 539 NNLEETFVKNSATVIKELEKTDNILTYLEVLKDMKKDDKYLDFEEFEKLFNKKLKKYELK 598

Query: 552 ---ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPY--LESIQDYFVRE 606
               +K      +     +D  A    D  G  + D  L + E VP+     I+++  +E
Sbjct: 599 AVSLNKFISTGLMTNMIVRDENASIQKDTKGNIVVDPELRDTEIVPFTYKGGIEEFIKKE 658

Query: 607 VSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIAT 666
           V P+  DA++        D+   ++GYEINF ++FY+ +    ++ I A +K +E +   
Sbjct: 659 VLPYHDDAFV--------DESKTQIGYEINFTKYFYKAKELESVETIVARIKELEKESDG 710

Query: 667 LLEEMA 672
           +++ + 
Sbjct: 711 MMKNIL 716


>gi|57506068|ref|ZP_00371991.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis
           RM3195]
 gi|57015676|gb|EAL52467.1| probable DNA methylase HsdM VC1769 [Campylobacter upsaliensis
           RM3195]
          Length = 639

 Score =  561 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 209/697 (29%), Positives = 340/697 (48%), Gaps = 93/697 (13%)

Query: 7   SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
               + +FIW  A+DL    +    +  VILP T+LRRL+  LEPT+  V E Y      
Sbjct: 5   QFQPIISFIWSVADDLLRDVYVKGKYRDVILPMTILRRLDVILEPTKDKVLETYNEDKDI 64

Query: 66  NIDL---ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +    +     +  +FYN S ++L  L     N R N E+Y+  FS+N K I   F F
Sbjct: 65  ADEDTLKDLLCDASKSTFYNYSNFTLKKLLNDPKNIRINFENYLDGFSENIKDIISKFKF 124

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNIYEHLIRRF 166
            + +  L++A +LY + + F   +++                   +  M  ++E LIR+F
Sbjct: 125 RNQLDTLDEAKILYGVIERFCSPKINLSMHDIKDDKGEILHKGLSNLGMGYVFEELIRKF 184

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E +E A +  TPR+++ L T L+  P     ++      ++YD  CG+GG LT++   
Sbjct: 185 NEENNEEAGEHFTPRELIDLMTHLVFLPVKDKIQKG---AFSIYDNACGSGGMLTESKEF 241

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + D     +    +  +GQE+ PET+A+C A MLI+    D       NI+ GSTLS+D 
Sbjct: 242 IIDESGPIRSKAQIYLYGQEINPETYAICKADMLIKGENPD-------NIKYGSTLSEDK 294

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG----ELGRFGPGLPKISDGSMLFLMHL 342
             G++F + L+NPP+GK WEKD+  +    K G       RF  G+   SDG M+FL+++
Sbjct: 295 LGGEKFDFMLTNPPYGKSWEKDQKELSVSKKGGATTCNDSRFQVGITSKSDGQMMFLLNM 354

Query: 343 ANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +K++ P      G R A V + S LFN    SG   IR++++END +EAI+ALPT++F+
Sbjct: 355 LSKMKKPKENNGLGSRIASVHNGSSLFNSD--SGMVAIRKYIIENDFLEAIIALPTNMFY 412

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456
            T I T++WIL+N KT+ ++GKVQLINAT+   +T ++   G+K+  +      +I +++
Sbjct: 413 NTGIPTFIWILTNNKTKAKKGKVQLINATNESYYTKMKKSLGQKQNEMTKTHIEKITELF 472

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           ++       ++ D   FGY +I + RP  +  +L+      L+            +   L
Sbjct: 473 LTNRENDDCKIYDNAEFGYTKITIERPKSIEILLNDEKFQALK-----------DKDKIL 521

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
             L+ +      +   E F+           L VK  K+     I               
Sbjct: 522 AKLQELEISPQDFISKEDFINF---------LDVKLKKAEENLLI--------------- 557

Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                  D++ T   E +P  + +Q Y+  EV P++ +A+I          E   VGYEI
Sbjct: 558 -------DSDKTNNTEKIPLTQDVQSYYENEVKPYMLNAWIA--------WESKVVGYEI 602

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            FN++FY Y   R L+ I+ +L+ +E +   LL E+ 
Sbjct: 603 LFNKYFYTYTLPRSLEAINKDLQDLEQETQDLLREIL 639


>gi|332885122|gb|EGK05374.1| hypothetical protein HMPREF9456_02873 [Dysgonomonas mossii DSM
           22836]
          Length = 600

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 224/681 (32%), Positives = 352/681 (51%), Gaps = 108/681 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M  F       A+ IW+ A+ L GD+K +D+GKVILP T+LRRL+C LEPT+  V +   
Sbjct: 1   MKNFREK----ADLIWRVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLP 56

Query: 61  AFG--GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
                  N    +  K+AG++F+N S+++   L     N   NL  YI  FS +A+ I E
Sbjct: 57  KVSSLKDNAKDLALNKIAGFNFHNRSQFNFQKLVADPNNIGANLRQYINGFSTSAREIIE 116

Query: 117 DFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            F+F   I R++     +L+++ K F  I+L    +    M  ++E LIR+F  + +E A
Sbjct: 117 YFNFDDQIDRMDDPRTDILFRVVKAFQAIDL--SDMDSMEMGYVFEELIRKFAEQSNETA 174

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+++ L   LL   D  +  +  G+++T+YDP CGTGG L+ A  +V +     
Sbjct: 175 GEHFTPREIIRLMVNLLFIEDREMLTQK-GIVKTMYDPACGTGGMLSIAEQYVKELNPDA 233

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQE+ PE++A+C + MLI+            NI+ G+T + D    ++F Y
Sbjct: 234 ELK----VFGQEINPESYAICKSDMLIKGQNP-------GNIKFGNTFTVDGLDDEKFDY 282

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG  W+K +  ++ E +N G  GRFG GLP+I+DGS+LFL H+ +K++     G
Sbjct: 283 MLSNPPFGVDWKKAEKIIKTEAENKGMSGRFGAGLPRINDGSLLFLQHMVSKMK---GSG 339

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            R  IV + SPLF G A SGES IR+W++END +EA+VA+P  LF+ T I+TY+WI++N 
Sbjct: 340 TRIGIVFNGSPLFTGAAESGESNIRKWIIENDWLEAVVAMPDQLFYNTGISTYVWIVTNH 399

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K++ER+GK+QLINAT         G K   +  +            E  +F R +D    
Sbjct: 400 KSKERKGKIQLINAT---------GTKDEELLKE---------GKLEFNRFWRKMDRS-L 440

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           G +R  +        I   T +     +  + K+ P                   +G+  
Sbjct: 441 GNKRKAIAENGNTKGIGFITQIYGNFQENEFCKILPNE----------------YFGYWR 484

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
             V++ ++                                V D N +  P+T+L  YEN+
Sbjct: 485 VTVEQPLR---------------------------ENGKIVKDRNKQPKPNTSLRNYENI 517

Query: 594 PYL----------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           P+L          ++I++YF  EV PH+P+A+ID            ++GYE+NF ++FY+
Sbjct: 518 PFLKKDANGKLIPQTIEEYFDAEVKPHLPEAWIDH--------SKTKIGYEVNFTKYFYE 569

Query: 644 YQPSRKLQDIDAELKGVEAQI 664
           ++P R L DI A++  +E +I
Sbjct: 570 FKPLRALADIRADILALEEEI 590


>gi|86153233|ref|ZP_01071437.1| putative type I restriction enzyme MjaXP M protein [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|85842959|gb|EAQ60170.1| putative type I restriction enzyme MjaXP M protein [Campylobacter
           jejuni subsp. jejuni HB93-13]
          Length = 636

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/696 (30%), Positives = 350/696 (50%), Gaps = 91/696 (13%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F                  +    + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+       +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339
            D     +F + LSNPP+GK WE D+  +  E K         RF  G+   SDG M+FL
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFL 350

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +++ +K++     G R A V + S LFN    SG   IR+ ++END +EAIVALPT++F+
Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFY 408

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456
            T I T++WI++N+K E ++GKVQLINAT+   ++ ++   G K+  +  +   +I  ++
Sbjct: 409 NTGIPTFIWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +   + K  ++LD   FGY +I + +P  +  + D    A+L+            +   L
Sbjct: 469 LENASSKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKIL 517

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
           + L+ + Q +  +   E F+         K L VK  KS     I               
Sbjct: 518 EKLEQLEQNLQDFKNREEFI---------KFLGVKLKKSEENLII--------------- 553

Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                  D++ T   E +P   +IQ+Y+  EV P+V +++I          E   VGYEI
Sbjct: 554 -------DSDKTNNTEKIPLKTNIQNYYDTEVKPYVANSWIA--------WESASVGYEI 598

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            FN++FY Y P RKL++I++EL+ +E ++  LL+E+
Sbjct: 599 LFNKYFYIYTPPRKLEEINSELEKLEKEVQDLLKEI 634


>gi|121612129|ref|YP_001000444.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005387|ref|ZP_02271145.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|87249524|gb|EAQ72484.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|107770373|gb|ABF83710.1| putative type I restriction-modification system HsdM subunit
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 636

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 215/696 (30%), Positives = 350/696 (50%), Gaps = 91/696 (13%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F                  +    + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+       +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339
            D     +F + LSNPP+GK WE D+  +  E K         RF  G+   SDG M+FL
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFL 350

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +++ +K++     G R A V + S LFN    SG   IR+ ++END +EAIVALPT++F+
Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFY 408

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456
            T I T++WI++N+K E ++GKVQLINAT+   ++ ++   G K+  +  +   +I  ++
Sbjct: 409 NTGIPTFIWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +   + K  ++LD   FGY +I + +P  +  + D    A+L+            +   L
Sbjct: 469 LENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKIL 517

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
           + L+ + Q +  +   E F+         K L VK  KS     I               
Sbjct: 518 EKLEQLEQNLQDFKNREEFI---------KFLGVKLKKSEENLII--------------- 553

Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                  D++ T   E +P   +IQ+Y+  EV P+V +++I          E   VGYEI
Sbjct: 554 -------DSDKTNNTEKIPLKTNIQNYYDTEVKPYVANSWIA--------WESASVGYEI 598

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            FN++FY Y P RKL++I++EL+ +E ++  LL+E+
Sbjct: 599 LFNKYFYIYTPPRKLEEINSELEKLEKEVQDLLKEI 634


>gi|325104611|ref|YP_004274265.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
 gi|324973459|gb|ADY52443.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
          Length = 746

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 213/764 (27%), Positives = 359/764 (46%), Gaps = 111/764 (14%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+  T     L  FI+  A+D L   ++ + +  VILP T++RRL+  LEPT+  V + Y
Sbjct: 1   MSINTKDLDPLIRFIYSIADDHLINTYEPSKYKDVILPMTVIRRLDLVLEPTKDRVIDTY 60

Query: 60  LAFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKA 113
             +     +L+S +K     +G +FYNTS ++L +L +   N + N  +Y+  FS N + 
Sbjct: 61  NKYKDKLDNLDSLLKSDKQGSGVAFYNTSPFTLKSLLNDSANIKANFINYLDGFSPNVQD 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I   F F + I  L++A  L+ + + F  + I+L  D +P   M  ++E L+RRF    +
Sbjct: 121 IISRFKFRNEIDTLDEAEKLFAVIQKFCSNKIDLSIDALPPLSMGYVFEDLLRRFNEATN 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A    TPR+++ L T ++  P     ++       +YDP  G+G  LT++ N + D  
Sbjct: 181 AEAGRHFTPREIIELMTNIIFLPVKDKIQQG---SFLVYDPCAGSGAMLTESKNFMTDDT 237

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
              K    +  +GQE  P  +A+  + ML++  + D        I  GSTLS+  F    
Sbjct: 238 GKIKSKATIHLYGQENTPTIYAISKSDMLLKNEDPDK-------IVFGSTLSQYGFDNDL 290

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRF--------GPGLPKISDGSMLFLMH 341
           +F + L+NPP+G  W+ DKD + K         RF             +++DG ++F+MH
Sbjct: 291 KFDFMLTNPPYGTSWKDDKDILTKAGGGKIVDRRFIIQKEYDADAATTRVNDGQLMFVMH 350

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + +K++   + G R A V + S LF G AG GESEIR+ ++E D++EA++ALP D+F+ T
Sbjct: 351 MLSKMKE-TDLGSRIASVHNGSALFTGDAGQGESEIRKHIIEKDMLEAVIALPNDMFYNT 409

Query: 402 NIATYLWILSNRKTEERRGKVQLINATD---LWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            I T++ I++NRK E R+GKVQLINA +        ++ G KR  +  +  +++ ++Y+ 
Sbjct: 410 GIPTFILIITNRKPEHRKGKVQLINANNEAFFGKRAKSLGSKRNELKPEHIKKVTELYLE 469

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-------- 510
            +    S++ D   FG+ +I V RP R +  LD    A +       +L  L        
Sbjct: 470 FKETPHSKIFDNNEFGFAQIIVHRPSRFAIQLDAKHTAEIRFASDNTELRKLIYAECGEQ 529

Query: 511 --------------------------HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
                                           +++   + +     +A+    +S   ++
Sbjct: 530 VYSSDAESRQAVENFVLEYFLNEEDSEDEEPAELVVANLNKKQKKIYAQVTDIKSWLRDK 589

Query: 545 AKTLKVKASKSF--------IVAFINAFGRK-----------------------DPRADP 573
               +V A            I AF   F                          D +A+ 
Sbjct: 590 QLMQEVTAMAKEFGTEPLYDINAFNKKFKEYGKKNNLKYAAKDVKDIRKCITWFDKKAEA 649

Query: 574 VTD---VNG--EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
                  +G   ++ D+NL + EN+P  + IQ +F  EV P  PDA+         + E 
Sbjct: 650 EIKSVSKDGTINYVSDSNLKDTENIPLKQDIQAFFETEVLPFAPDAW--------WNPEE 701

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            ++GYEINFN++FYQY+  R+L +I  ++  +E     LL+E+ 
Sbjct: 702 TKIGYEINFNKYFYQYKAPRQLSEIAKDIFEIEKSADKLLKEIV 745


>gi|325289014|ref|YP_004265195.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964415|gb|ADY55194.1| N-6 DNA methylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 599

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 227/684 (33%), Positives = 349/684 (51%), Gaps = 105/684 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-- 63
            +    A+ IWK A+ L GD+K +D+GKVILP T+LRRL+C LEPT+  V +        
Sbjct: 2   KNFKEKADLIWKVADLLRGDYKQSDYGKVILPMTVLRRLDCVLEPTKQKVLDYLPKVESL 61

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             +    +  K+AG++F+N S+ +   L     N   NL +YI  FS +A+ I E F+F 
Sbjct: 62  KESAKDIALNKIAGFNFHNRSQLNFDKLIADPNNVSVNLRNYINGFSSSAREIIEYFNFD 121

Query: 122 STIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             I R++     +L+++ K F  I L    +    M  ++E LIRRF  + +E A +  T
Sbjct: 122 DHIDRMDDPKTDILFRVLKAFQEIGLT--DMDSMEMGYVFEDLIRRFAEQSNETAGEHFT 179

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   LL   D  +     G+++TLYDP CGTGG L+    +V +     ++   
Sbjct: 180 PREVIRLMVNLLFIEDKDILT-QEGIVKTLYDPACGTGGMLSVGEQYVKELNPKAELK-- 236

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               GQE+ PE++A+C + MLI+            NI+ G+T + D    ++F Y LSNP
Sbjct: 237 --VFGQEINPESYAICKSDMLIKGQNP-------SNIKFGNTFTVDGLEEEKFDYMLSNP 287

Query: 300 PFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG  W+K +  ++ E  N G  GRFG GLP+I+DGS+LFL H+ +K++     G R  I
Sbjct: 288 PFGVDWKKAEKIIKAEADNKGMNGRFGAGLPRINDGSLLFLQHMISKMK---LSGTRIGI 344

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + SPLF G A SGES IR+W++END +EA++ALP  LF+ T I+TY+WI++N K+EER
Sbjct: 345 VFNGSPLFTGAAESGESNIRKWIIENDWLEAVIALPDQLFYNTGISTYIWIINNSKSEER 404

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
           +GKVQLINAT         G K   +  +            +  +F + +D    G +R 
Sbjct: 405 KGKVQLINAT---------GAKDEELTKE---------GKLDFNRFWQKMDRS-LGDKRK 445

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           K+        I   T L     +  + K+ P                   +G+    V++
Sbjct: 446 KIAENGNTKGIGFITQLYGNFEENEFVKIYPNE----------------FFGYWRITVEQ 489

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL-- 596
            +K N                              V    G+  PDT+L +YEN+P+L  
Sbjct: 490 PMKENS----------------------------KVVKSKGQPKPDTSLRDYENIPFLKK 521

Query: 597 --------ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
                   ++I++YF  EV PH+ +A+ID            ++GYEINF ++FY+++P R
Sbjct: 522 GSDGNLIPQTIEEYFETEVKPHLLEAWIDH--------SKTKIGYEINFTKYFYEFKPLR 573

Query: 649 KLQDIDAELKGVEAQIATLLEEMA 672
            L DI A++  +E +     + + 
Sbjct: 574 ALADIKADILALEEKTLETEKTVL 597


>gi|299531530|ref|ZP_07044936.1| N-6 DNA methylase [Comamonas testosteroni S44]
 gi|298720493|gb|EFI61444.1| N-6 DNA methylase [Comamonas testosteroni S44]
          Length = 581

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 225/490 (45%), Positives = 308/490 (62%), Gaps = 23/490 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  SL+ FIW  A+ L GD+K +D+GKVILPFT+LRRL+C L  T+SAV  +        
Sbjct: 2   NQQSLSAFIWSVADLLRGDYKQSDYGKVILPFTVLRRLDCVLTDTKSAVLAELAVKQKQG 61

Query: 67  IDLES-FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           ++ E   ++ +G SFYNTS   L TL   + +   NL SY+ +FS   + +FE F+F   
Sbjct: 62  VNPEPFLLRKSGQSFYNTSALDLKTLLGDTDHIAQNLYSYVQAFSPAVRDVFERFEFHVQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KAGLLY++ + F+ I+LHP+ V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKAGLLYQVTEKFAQIDLHPNRVSNMQMGLVFEELIRKFSEISNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   L+   DDA+    PG++RT+YDPT GTGG L+ A  ++ +   H ++       
Sbjct: 182 IRLMVNLIFIEDDAILS-KPGVVRTIYDPTAGTGGMLSVAGEYLTEHNPHARL----TVF 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PE++A+C A MLI+  +         +I  G+TLS D  T K F Y LSNPPFG 
Sbjct: 237 GQELNPESYAICKADMLIKGQDV-------ASIAFGNTLSDDGHTAKHFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  V KEH+  G  GRFGPGL ++SDGSMLFL+HL +K+     GG R  IVL+ 
Sbjct: 290 EWKKVEKEVRKEHEQQGYNGRFGPGLLRVSDGSMLFLLHLISKMRPAQEGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIRR++LENDL+EAIV LPTD+F+ T IATY+WI+SNRK E R+GKV
Sbjct: 350 SPLFTGGAGSGESEIRRYVLENDLLEAIVGLPTDMFYNTGIATYVWIISNRKPEARKGKV 409

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK------FSRMLDYRTFGY 475
           QLI+A+ +W  +R   G KR+ ++D     I  ++      K       SR+ D   FGY
Sbjct: 410 QLIDASGMWQKMRKSLGSKRKELSDAHIEHITRLFGEFVEAKDADGKPLSRIFDNEDFGY 469

Query: 476 RRIKVLRPLR 485
             I V RPLR
Sbjct: 470 HSITVERPLR 479


>gi|265754308|ref|ZP_06089497.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA]
 gi|263235017|gb|EEZ20572.1| N-6 DNA methylase [Bacteroides sp. 3_1_33FAA]
          Length = 658

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 233/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYL 60
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L  + + V       E+  
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116
                +ID  +   +  AGY FYNTS  SLS L     +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            V  GA  F TPRD+V L T + L   +    +  G I ++YDP CGTGG LT   + + 
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD-GKIISVYDPCCGTGGILTLTKDTIE 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F 
Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F++ L+NPP+G  W+++ D+V  E +  +  RF PGLP  SDG +LF +H+ +K++ 
Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IATYLW
Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409

Query: 409 ILSNRKTEERRGKVQLINAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           I  N+K E  + KV LINA   +    +R N G K  +++D  R +I  IY + E    +
Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +++D   F Y  I V RPLR+ +   KT  A L+       L+ +     LD +      
Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQSEALANIVA---LDDIDTERTD 526

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581
              + + ES              K+K +   I      FG     A  V     D N + 
Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVCETAPEVHVIPLDDNSDL 573

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + DTNL +YE++P+   IQ+YF  EV    PDA++D+        E  ++G E   ++ F
Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFTPDAWMDR--------EKDKIGCEFPISKLF 625

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+YQP R ++DI A+++ +E      L  +  +
Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658


>gi|212690634|ref|ZP_03298762.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855]
 gi|237725171|ref|ZP_04555652.1| N-6 DNA methylase [Bacteroides sp. D4]
 gi|212666734|gb|EEB27306.1| hypothetical protein BACDOR_00121 [Bacteroides dorei DSM 17855]
 gi|229436437|gb|EEO46514.1| N-6 DNA methylase [Bacteroides dorei 5_1_36/D4]
          Length = 658

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 233/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYL 60
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L  + + V       E+  
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116
                +ID  +   +  AGY FYNTS  SLS L     +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLKGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            V  GA  F TPRD+V L T + L   +    +  G I ++YDP CGTGG LT   + + 
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD-GKIISVYDPCCGTGGILTLTKDTIE 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F 
Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F++ L+NPP+G  W+++ D+V  E +  +  RF PGLP  SDG +LF +H+ +K++ 
Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IATYLW
Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409

Query: 409 ILSNRKTEERRGKVQLINAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           I  N+K E  + KV LINA   +    +R N G K  +++D  R +I  IY + E    +
Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +++D   F Y  I V RPLR+ +   KT  A L+       L+ +     LD +      
Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQSEALANIIA---LDDIDTERTD 526

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581
              + + ES              K+K +   I      FG     A  V     D N + 
Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETAPEVHVIPLDDNSDL 573

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + DTNL +YE++P+   IQ+YF  EV    PDA++D+        E  ++G E   ++ F
Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR--------EKDKIGCEFPISKLF 625

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+YQP R ++DI A+++ +E      L  +  +
Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658


>gi|148926925|ref|ZP_01810602.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845009|gb|EDK22106.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 636

 Score =  555 bits (1430), Expect = e-156,   Method: Composition-based stats.
 Identities = 212/697 (30%), Positives = 344/697 (49%), Gaps = 91/697 (13%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   KQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F                  +    + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+       +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+           + I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGENP-------ERIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFL 339
            D     +F + LSNPP+GK WE D+  +  E K         RF  G+   SDG M+FL
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGLNSTCNDPRFSVGITSKSDGQMMFL 350

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +++ +K++     G R A V + S LFN    SG   IR+ ++END +EAIVALPT++F+
Sbjct: 351 LNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFY 408

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIY 456
            T I T++WI++N+K+E ++GKVQLIN T+   ++ ++   G K+  +  +   +I  ++
Sbjct: 409 NTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLGSKQNEMTKEHIEKITKLF 468

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +   + K  ++LD   FGY +I + +P  +  + D    A+L+            +   L
Sbjct: 469 LENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKIL 517

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
           + L+ + Q    +   E F+         K L VK  KS     I               
Sbjct: 518 EKLQELEQNPQDFKNREEFI---------KFLGVKLKKSEENLII--------------- 553

Query: 577 VNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEI 635
                  D++ T   E +P   +IQ Y+  EV P+V +++I          E   VGYEI
Sbjct: 554 -------DSDKTNNTEKIPLKTNIQGYYDTEVKPYVANSWIA--------WESASVGYEI 598

Query: 636 NFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
            F+++FY Y P RKL++I+ EL+ +E ++  LL E+ 
Sbjct: 599 LFSKYFYTYTPPRKLEEINNELEKLEKEVQDLLREIV 635


>gi|237709676|ref|ZP_04540157.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA]
 gi|229456312|gb|EEO62033.1| N-6 DNA methylase [Bacteroides sp. 9_1_42FAA]
          Length = 658

 Score =  554 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 233/693 (33%), Positives = 354/693 (51%), Gaps = 61/693 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------REKYL 60
           +A  L   IW   E L   + + D   VILPFTLLRRL+C L  + + V       E+  
Sbjct: 2   TAEELGQMIWNVKELLRNVYDNKDVEDVILPFTLLRRLDCVLVGSEALVATNMKQLEELG 61

Query: 61  AFGGSNID--LESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFE 116
                +ID  +   +  AGY FYNTS  SLS L     +  NN ++Y+  FS N + I +
Sbjct: 62  QTSQEDIDNMMPMLMDAAGYKFYNTSGLSLSKLITVPADLTNNFKTYLEGFSPNIREILK 121

Query: 117 DF-------DFSSTIARLEKAGLLYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +F         S   + L +  LL ++ K F   I+L PD V + +M  ++E +IR    
Sbjct: 122 NFTGKGENASLSDIFSNLARKNLLLQVTKAFVLNIDLSPDKVDNHMMGTVFEIVIRYAKE 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            V  GA  F TPRD+V L T + L   +    +  G I ++YDP CGTGG LT   + + 
Sbjct: 182 SVGIGAGQFYTPRDIVRLMTEITLLGQEDKIYQD-GKIISVYDPCCGTGGILTLTKDTIE 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++   +   GQEL  +T+A+C + ++++        D +K I  G TL  D F 
Sbjct: 241 ETAKERRVDVTVNLFGQELNDKTYALCKSDIIMKG-------DEAKGIAVGDTLLVDEFR 293

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F++ L+NPP+G  W+++ D+V  E +  +  RF PGLP  SDG +LF +H+ +K++ 
Sbjct: 294 DQKFNFMLANPPYGVDWKREYDSVSAEAE-DKNSRFAPGLPDKSDGQLLFTLHMLHKMDP 352

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G R  I+ + SPLFNG AGSG S IR+ +L+NDL++AI+ALP  LF+ T IATYLW
Sbjct: 353 K---GSRVGILSNGSPLFNGGAGSGWSNIRKHMLDNDLLDAIIALPGGLFYGTGIATYLW 409

Query: 409 ILSNRKTEERRGKVQLINAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           I  N+K E  + KV LINA   +    +R N G K  +++D  R +I  IY + E    +
Sbjct: 410 IFDNKKPESHKNKVLLINAAKDEYVQPMRKNLGMKNVLVSDYGRSEIGRIYHAFETCDNA 469

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +++D   F Y  I V RPLR+ +   KT  A L+       L+ +     LD +      
Sbjct: 470 KLMDKDDFFYTYITVERPLRLIYKDVKTKYAALDEKKQNEALANIVA---LDDIDTERTD 526

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV----TDVNGEW 581
              + + ES              K+K +   I      FG     A  V     D N + 
Sbjct: 527 AEFFAYLES-------------KKIKTTAKLIKDCRTFFGEVSETASEVHVIPFDDNSDL 573

Query: 582 IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFF 641
           + DTNL +YE++P+   IQ+YF  EV    PDA++D+        E  ++G E   ++ F
Sbjct: 574 VADTNLRDYESIPFKTDIQEYFQNEVLRFAPDAWMDR--------EKDKIGCEFPISKLF 625

Query: 642 YQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           Y+YQP R ++DI A+++ +E      L  +  +
Sbjct: 626 YEYQPLRSVEDILADIRALEEDEEQELSSLLND 658


>gi|149175699|ref|ZP_01854318.1| type I restriction-modification [Planctomyces maris DSM 8797]
 gi|148845418|gb|EDL59762.1| type I restriction-modification [Planctomyces maris DSM 8797]
          Length = 580

 Score =  553 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 224/674 (33%), Positives = 331/674 (49%), Gaps = 104/674 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L++FIW  A+ L GD+K +++GKVILPFT+LRRL+C LEPT+ AV ++      +N
Sbjct: 2   NQQQLSSFIWSVADLLRGDYKQSEYGKVILPFTVLRRLDCVLEPTKDAVLKEKEKREAAN 61

Query: 67  IDLESFVKV-AGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           I+ E F+K  +   FYNTS   +  L     + R NL SYI SFSD+ + IFE F+F + 
Sbjct: 62  INPEPFLKKKSQQLFYNTSPLDIKKLMGDQDHIRENLFSYIESFSDSVRDIFECFEFHTQ 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + RL KA LLY + + F+ ++LHPD V +  M  ++E LIR+F    +E A +  TPR+V
Sbjct: 122 VERLAKADLLYMVTEKFANVDLHPDVVSNAQMGLVFEELIRKFAELSNETAGEHFTPREV 181

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD      PG++R+LYDPT GTGG L+ A  H++      ++    V +
Sbjct: 182 IRLMVNLLFIEDDDALT-KPGIVRSLYDPTAGTGGMLSIAEEHLSGQNPDARL----VMY 236

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL  E++A+C A MLI+  +          I  G+TLS+D   G+ F Y LSNPPFG 
Sbjct: 237 GQELNAESYAICKADMLIKGQDI-------SKIIHGNTLSEDGLPGEHFDYMLSNPPFGV 289

Query: 304 KWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  +++EH+ +G  GRFGPGLP++SDGS+LFLMHL +K+    +GG R  IVL+ 
Sbjct: 290 EWKKIQKEIKREHQQDGFNGRFGPGLPRVSDGSLLFLMHLISKMRPAKDGGSRFGIVLNG 349

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SP                                LF  T  A            E R  V
Sbjct: 350 SP--------------------------------LF--TGSAGS-------GESEIRRYV 368

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
                                + +       D++ +     +  ++  R   +R+ KV  
Sbjct: 369 L-----------------ENDLLEAIIGLPTDMFYNTGISTYIWIVTNRKPKHRKGKVQ- 410

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
                          ++A   W+K+     S   ++    + +I          K+  K 
Sbjct: 411 --------------LIDASCMWQKMRKSLGSKRKELSSEHIDEITRLF---GNAKKVTKG 453

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----DVNGEWIPDTNLTEYENVPYLES 598
               +   K +             +D   + V        G+   DT L + E+VP  E 
Sbjct: 454 GTPISRIFKTTDFGYQTITVERPERDEDGNIVKETKGKRKGQPKIDTKLRDTEDVPLNED 513

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           + +YF REV PHVPDA+ID            ++GYEI FNR FY ++P R L +IDAELK
Sbjct: 514 VDEYFQREVLPHVPDAWIDHDK--------TKIGYEIPFNRHFYVFKPPRTLDEIDAELK 565

Query: 659 GVEAQIATLLEEMA 672
           GV   I  ++ E++
Sbjct: 566 GVTDNIVAMIGELS 579


>gi|150005917|ref|YP_001300661.1| type I restriction-modification system M subunit [Bacteroides
           vulgatus ATCC 8482]
 gi|149934341|gb|ABR41039.1| type I restriction-modification system M subunit [Bacteroides
           vulgatus ATCC 8482]
          Length = 771

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 200/794 (25%), Positives = 357/794 (44%), Gaps = 155/794 (19%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              L   IW  A+D L   F    +  VILP  +LRRL+  LEPT+ AV ++Y     A 
Sbjct: 1   MEQLIALIWNIADDVLRDVFLRGQYRDVILPMVVLRRLDALLEPTKVAVEQEYKSQIEAG 60

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDNAKAIFE 116
              N+D E+    +G ++YN S+++L+ L + ++ N      N   Y+  +S+N K + +
Sbjct: 61  LADNLDEEALKDESGQTYYNLSKWTLNRLKNQSSDNNDINYTNFIEYLNGYSENVKDVLK 120

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEHLI 163
           +F+F + + +L     L  I +  +   L+                  +  M  ++E L+
Sbjct: 121 NFEFYAKVKKLADNDRLISIIERITDPRLNLTDRPATDPDGLPLPAVSNLQMGTLFEELL 180

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           RRF  E +E A +  TPRDV+ L   ++ +P           I +LYDP CG+GG LT+ 
Sbjct: 181 RRFNEENNEEAGEHFTPRDVIELLAKMVFEPVKDNL----PKIISLYDPACGSGGMLTEG 236

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            +++ + G        +  +G E+ PET+A+C +  +I+ ++        + + +G+T++
Sbjct: 237 RDYLLNMGVTPNA---IQMYGTEVNPETYAICKSDFIIKGVDP-------EGMHRGNTIT 286

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-------------PK 330
           ++ F  K+F Y L+NPP+GK W++DK  +  + K+    RF   L             P+
Sbjct: 287 ENHFHNKQFGYMLTNPPYGKSWKEDKKKIYHD-KDLLDARFNLKLTNFIGEEEIVDSTPR 345

Query: 331 ISDGSMLFLMHLANKLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR-WLLENDLI 387
            SDG +LF++   +K++       G R A + + S LF G AGSGES IRR +L+EN+L+
Sbjct: 346 TSDGQLLFILEEVDKMKSLEAQPQGSRVASIHNGSSLFTGDAGSGESNIRRYYLIENNLV 405

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIND 446
           +AIV LP ++F+ T I+TY+W+LSN K +    KVQLI+A+  +  +R N G +   +  
Sbjct: 406 DAIVQLPNNIFYNTGISTYVWLLSNHKQDH---KVQLIDASKAFDKLRKNLGSRNCEVTP 462

Query: 447 DQRRQILDIYVSRENGKF-------SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
                I+ IY++R   +        S++ D   F Y  +++ RPLR+           L 
Sbjct: 463 KDADDIVRIYMNRTECEANDDVRISSKIFDGDDFRYYSVQIERPLRLRCRFSAVKCDELL 522

Query: 500 ADITWRKLSPL----------------------------------------------HQS 513
            D +  +LS                                                 + 
Sbjct: 523 FDSSMMELSKWLYQTYGDKVYSGLEAEVTDIKEYLNENELKLTDKKFTTLVSAKKWQERR 582

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
                   +M ++    + +  +  ++     K L +K + + +   +     +DP A P
Sbjct: 583 ALQQAAMKLMHKVGTAEYDDYNLFLALNQKAIKELGLKLTAAQLKTILRTNAVQDPTAKP 642

Query: 574 VT----DVNGE-------------------------------WIPDTNLTEYENVPYLES 598
           V         +                               +  D++L + E +P  E 
Sbjct: 643 VIAKVLKAKNKDIPAFLATYGIDESLLPDYGYYPQTDGTYVTYEADSDLRDIEKIPVKED 702

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I +Y  REV+P+V +A+I+          + ++G EI+FN++FY+    R L++ + ++ 
Sbjct: 703 IWEYVQREVNPYVSEAWINL--------PVTKIGCEISFNKYFYKPAQLRSLEENEHDIL 754

Query: 659 GVEAQIATLLEEMA 672
            ++ Q    +E + 
Sbjct: 755 ELDRQSQGFIEALL 768


>gi|281355059|ref|ZP_06241553.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548]
 gi|281317939|gb|EFB01959.1| N-6 DNA methylase [Victivallis vadensis ATCC BAA-548]
          Length = 674

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 207/703 (29%), Positives = 327/703 (46%), Gaps = 80/703 (11%)

Query: 11  LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L NF+W  A D L  + +  D+ K+ILPF +LRRL+  LE T+  V +     G   +  
Sbjct: 9   LFNFLWNIANDVLVQNVEKGDYKKIILPFIVLRRLDLLLEQTKETVLDFVNDEGFRELPP 68

Query: 70  E----SFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
           E        V GY FYNTS ++++ L      T    N E+Y+  +S + + I   FD  
Sbjct: 69  ESQSEQLYVVTGYPFYNTSPFTMNLLKAETDQTRLAQNFEAYLDGYSYHVQDIIRKFDLK 128

Query: 122 STIARLEKAGLLYKICKNFSG------IELHPDTV--------PDRVMSNIYEHLIRRFG 167
            ++ RL  +  L  +   F+       IE   D           +  M  ++E L+RRF 
Sbjct: 129 HSLERLFNSPCLGMLISKFTDENINLGIEPVLDDNGNEKYPGLDNHTMGTLFEELLRRFN 188

Query: 168 SE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +     A +  TPRD V L   + + P     K+       +YD  CGTGG L+ + + 
Sbjct: 189 EDFSVTEAGEHYTPRDYVRLLADVAIKPVVGKIKKG---TYEIYDAACGTGGILSVSEDT 245

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR----LESDPRRDLSKNIQQGSTL 282
             + GS  +       +GQEL+P+T+A+C A ++I      L+        +    GST+
Sbjct: 246 FKELGSRIETN----IYGQELQPDTYAICKAEIMISGKNKPLDYTYGGVKRECFAFGSTI 301

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGP--------GLPKISD 333
           S++   GK F +C+SNPPFG  W+KD +     +K+     RF P         LP I D
Sbjct: 302 SQNGHEGKLFDFCISNPPFGTPWKKDLENWGYANKDKITDLRFRPLVGDETLDFLPDIGD 361

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             MLFL +  ++++     G R   + + S LF G AG G S +RR ++ENDL+EAI+A+
Sbjct: 362 PQMLFLANNLSRMKSDTALGTRIVEIHNGSSLFTGDAGQGPSNLRRHIMENDLLEAIIAM 421

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQI 452
           P ++F+ T I T++W+++NRK   R+GKVQLI+AT + T +R N G K    N + R  I
Sbjct: 422 PENMFYNTGIGTFVWVVTNRKEARRKGKVQLIDATAIKTPLRKNLGNKNCETNAEDRAAI 481

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           + +       + S++ D   FGY  I V RPLR+   LD         D++  KL    +
Sbjct: 482 VKLLTDFAENERSKIFDNDEFGYWSITVERPLRLKLNLDP--------DLSEAKLKESEK 533

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
               D +  +        W       ++K    K  +                   P A+
Sbjct: 534 KEIADAIAALPADAPLTDWDRCSPLLNLKKTLLKKARPY------------ITETCPEAE 581

Query: 573 PVTDVNGEWIPDTNLTEYENVPYL--ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGR 630
            V     E  PD  L +YE VP      I  +   EV P+ PDAY+        D+    
Sbjct: 582 VV-----EGEPDPKLRDYEQVPLKYEGGIAAFMANEVLPYAPDAYL--------DESKTE 628

Query: 631 VGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           +GYE++F ++FY+      ++ + A+++ +E +   +L+ +  
Sbjct: 629 IGYELSFTKYFYKPVELPSIESLAADIEAIEQRTDGILKAILA 671


>gi|227547714|ref|ZP_03977763.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227080212|gb|EEI18175.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 667

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 202/686 (29%), Positives = 335/686 (48%), Gaps = 48/686 (6%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           + T     L   IW+ A+D        + +G  I+PFT+LRRLE  LE T+  V +    
Sbjct: 14  KQTAKVNRLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLESTKKDVLDLVHR 73

Query: 62  FGGSNIDLE----SFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIF 115
                 D          +    F+NTSE SL  L       +  L+ Y+ +FS N   I+
Sbjct: 74  ENVKGTDPAIVALKIESMFKLRFWNTSELSLERLATSDDALKPGLKQYLNTFSPNILEIW 133

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           + F+F   I  L++   L+ +  +F+ I++  + + D+ M +I+E+L+ R  +  ++ A 
Sbjct: 134 DAFEFDKLIDFLDRNNQLWNVVNHFASIDMSDEALQDQTMGDIFENLMYRSFARKAKDAG 193

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPRD + L T++L   DD   +E  G+IR++YDPT GT G L  A + +       +
Sbjct: 194 EFYTPRDAIRLMTSILFTSDDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGIE 252

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +    V  GQEL+  + A+  + +L++  +        + ++ G++L+ D +    F Y 
Sbjct: 253 V----VVAGQELKESSFAMGKSDLLMQGFK------DPEVLKFGNSLTNDQYANDTFDYI 302

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG--G 353
           ++NPP+G  W+  ++ V+   + G   RF  GLP +SDG MLFLMH+A+KL        G
Sbjct: 303 MANPPYGSSWKAFQNEVKALQEGG-DPRFSEGLPAVSDGQMLFLMHIAHKLAPASGDTKG 361

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEND----LIEAIVALPTDLFFRTNIATYLWI 409
           GRAA+V + SPLF G A SG   IR++L+       +++AI+ALP D+F+ T IATY+WI
Sbjct: 362 GRAAVVTNGSPLFTGDAESGPDSIRKYLIGAQGGTEVLDAIIALPNDMFYNTGIATYIWI 421

Query: 410 LSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           L   K   RRG++Q I+AT++   +R N G+KR    +D  R+I  IY   E  + S ++
Sbjct: 422 LDQNKEPRRRGRIQFIDATEICAPMRKNMGQKRVEFTEDNIREITKIYKDFEETERSIIV 481

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 YR + + +    +  +    +A+  +  +                    + I  
Sbjct: 482 TADDLTYRDVPMFKVAHYAVSVTDETVAQALSHKS--------------AFPEHEEVIRE 527

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
               +           AK   VK     +   + A   +D  A    D  G  + D    
Sbjct: 528 MKGRDYNDLPKALKASAKAHGVKTGAPLLKHIMAALAVEDENAPASFDEKGNPVVDAASK 587

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
             E VPYLE + ++  REV P VPD         + D+ + +VG E+   R FY+ + SR
Sbjct: 588 VIERVPYLEDVSEHMEREVLPFVPD--------MQWDESLAKVGTELPLTRLFYKPEESR 639

Query: 649 KLQDIDAELKGVEAQIATLLEEMATE 674
            L+++DA++ G   +I  +  E+ ++
Sbjct: 640 SLEELDADIAGSLDRIYAMFGEVRSD 665


>gi|295394612|ref|ZP_06804831.1| type I restriction-modification system methyltransferase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972505|gb|EFG48361.1| type I restriction-modification system methyltransferase subunit
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 666

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 203/683 (29%), Positives = 338/683 (49%), Gaps = 48/683 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           + T    SL   IW+ A+D        + +G  I+PFT+LRRLE  L PT+ AV      
Sbjct: 14  KQTAKVNSLNAAIWQTADDYLRLIVPAENYGDYIIPFTVLRRLEGRLAPTKQAVLNLVER 73

Query: 62  FGGSNIDLE----SFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIF 115
                 D               F+NTSE SL  L +     +  L+ Y+ +FS N   I+
Sbjct: 74  ENAQGTDPAIVGLKIENKFKLRFWNTSELSLERLANSDDALKPGLKQYLNTFSPNILEIW 133

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
             F+F   I  L++   L+ + ++F+ I++  + + D+ M +I+E+L+ R  +   + A 
Sbjct: 134 NAFEFDKLIDLLDRNNQLWNVVQHFASIDMSDEALQDQTMGDIFENLMYRSFARKGKDAG 193

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPRD + L T++L   +D   +E  G+IR++YDPT GT G L  A + +       +
Sbjct: 194 EFYTPRDAIRLMTSILFTSNDTELEED-GIIRSVYDPTAGTCGMLIAARDALRAINPGIE 252

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +    V  GQEL+  + A+  + +L++  +        + ++ G++L  D + G  F Y 
Sbjct: 253 V----VVAGQELKESSFAMGKSDLLMQGFK------DPEVLKFGNSLINDQYAGDTFDYI 302

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGG 353
           ++NPP+G  W+  +  V+K  + G   RF  GLP +SDG MLFLMH+A+KL        G
Sbjct: 303 MANPPYGSSWKAFQKDVKKLQEQG-DPRFSEGLPAVSDGQMLFLMHIAHKLAPADGTTKG 361

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLL----ENDLIEAIVALPTDLFFRTNIATYLWI 409
           GRAA+V + SPLF G   SG   IR++L+     +++++AI+ALP D+F+ T+IATY+WI
Sbjct: 362 GRAAVVTNGSPLFTGDPESGPDGIRKYLMGAQGGSEVLDAIIALPNDMFYNTDIATYIWI 421

Query: 410 LSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           L   K   RRG++QLI+AT +   +R N GKKR  +++D  R+I  +Y   E  + S ++
Sbjct: 422 LDQNKEPRRRGRIQLIDATGISAPMRKNMGKKRVELSEDNIREITKLYKDFEQNERSIIV 481

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 YR + + +    +  + +  +A   +  +               L      I  
Sbjct: 482 TADDLTYRDVPMFKVAHYAVNVTEETVAEAMSHKS--------------ALAEHEAVIRE 527

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
               E     +     AK   VK     +   + A   +D  A    D  G  I D +  
Sbjct: 528 MKGREYNELPAALKVSAKAHGVKMGAPLLRHIVKALAVEDQNAPASLDEKGNPIVDASSK 587

Query: 589 EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSR 648
             E +PYL+ + ++  RE+ P VPD         + D+ + +VG E+   R FY+ Q +R
Sbjct: 588 VIERIPYLDDVSEHMEREILPFVPD--------MQWDESLAKVGTELPLTRLFYKPQETR 639

Query: 649 KLQDIDAELKGVEAQIATLLEEM 671
            L+++DA++     +I  +  ++
Sbjct: 640 SLEELDADIAASLDRIYAMFRKV 662


>gi|330992547|ref|ZP_08316495.1| Putative type I restriction enzyme MjaXP M protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760746|gb|EGG77242.1| Putative type I restriction enzyme MjaXP M protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 528

 Score =  532 bits (1370), Expect = e-149,   Method: Composition-based stats.
 Identities = 207/485 (42%), Positives = 291/485 (60%), Gaps = 17/485 (3%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    +A+ L++ IW+ A+ L GDFK  ++G+VILPFT+LRRL+  L PTR  V ++  
Sbjct: 1   MSTTPRTAS-LSSMIWQVADLLRGDFKPAEYGRVILPFTVLRRLDAVLAPTRDKVLKEKE 59

Query: 61  AFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
            +    ID      KVAG  F NTS+++L  +     N   NL +YI +FS  A+ IF+ 
Sbjct: 60  KWESKGIDPMPFMEKVAGLKFVNTSDFTLKGVLGDPDNLTQNLSAYINAFSPTARDIFDH 119

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F F+    RL KA LLY + + F   +L    V +  M  ++E LIR+F    +E A + 
Sbjct: 120 FRFTEQTDRLAKANLLYLVLEKFISFDLSDKAVDNHQMGQVFEELIRKFSEASNETAGEH 179

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V+ L   L+   DD+L       +RT+YDPT GTGG L+ A   + D     ++ 
Sbjct: 180 FTPREVIRLMVNLIFAEDDSLLTPGNAAVRTIYDPTAGTGGMLSVAEEFLLDHNPDARL- 238

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQEL PE++A+C A MLIR  +         NI+ G+TLS D     +F Y LS
Sbjct: 239 ---TMFGQELNPESYAICKADMLIRNQDV-------SNIRLGNTLSDDELADHKFDYMLS 288

Query: 298 NPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           NPPFG +W+K + AV  EH K G  GRFGPGLP+ISDGSMLFL+HL +K+    +GG R 
Sbjct: 289 NPPFGVEWKKVEKAVRAEHEKLGYDGRFGPGLPRISDGSMLFLLHLVHKMRPVKDGGARF 348

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            IVL+ SPLF G AGSGESEIRR++LE DL+EAI+ALPTD+FF T IATY+W+L+NRK  
Sbjct: 349 GIVLNGSPLFTGAAGSGESEIRRFVLEEDLVEAIIALPTDMFFNTGIATYVWVLTNRKPT 408

Query: 417 ERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            R+GKVQLI+A+  W  +R   G KR+ + +D    +  ++   +  + + ++       
Sbjct: 409 NRKGKVQLIDASSFWQKMRKSLGSKRKEMGEDDITLVTRLFRDAQEAQLATIIAADGTQT 468

Query: 476 RRIKV 480
           R + +
Sbjct: 469 REVVM 473


>gi|222444444|ref|ZP_03606959.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434009|gb|EEE41174.1| hypothetical protein METSMIALI_00055 [Methanobrevibacter smithii
           DSM 2375]
          Length = 541

 Score =  531 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 197/567 (34%), Positives = 308/567 (54%), Gaps = 44/567 (7%)

Query: 121 SSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              I  L +  +L+K+ + FS    +L P  V +  M  I+E LIRRF  + +E A +  
Sbjct: 2   EKHINTLSEKNILFKLVRKFSETTVDLSPKAVSNHEMGTIFEELIRRFSEQSNEEAGEHF 61

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPRDVV L T LL   ++       G I+ +YDP CGTGG LT    ++ +         
Sbjct: 62  TPRDVVKLMTELLFAGEENES----GSIKLVYDPACGTGGMLTSCKEYIQNINPDI---- 113

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLS 297
            +V +GQE++ E +A+C A ML++        + ++NI+   STLS D  +G++F Y +S
Sbjct: 114 DIVLYGQEIQDEIYAICKADMLMKG-------EKAENIKGPYSTLSNDKLSGEKFDYMIS 166

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G+ WE D D V+ E + G  GRFG GLP+ SDG +LF+ H+ +K++       R A
Sbjct: 167 NPPYGRDWETDADEVKSEAEQGYNGRFGAGLPRKSDGQLLFIQHMISKMKTNDK--SRIA 224

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+ + SPLF G AGSGES IR+W+ END +EA++ALP  LFF T I TY+WIL+N+KT  
Sbjct: 225 IITNGSPLFTGDAGSGESNIRKWIFENDYLEALIALPDQLFFNTGIGTYIWILTNKKTPN 284

Query: 418 RRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+G+VQLI+A   +  +R N G KR  I +D   +I+  Y         ++ +   FGY 
Sbjct: 285 RQGRVQLIDARKEYAGMRKNLGNKRHTIPEDSITKIIKTYNEFAESDKVKIYNNEDFGYT 344

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-------------HQSFWLDILKPMM 523
           +I V R +++++ + +  L  L +   ++KL+                     + +K  +
Sbjct: 345 KIIVERLMQLNYQVTQERLENLYSYSAFKKLAESKSKDPKTKIADETEGKKQQEEIKEAL 404

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
             I    + +    E+          +K   +FI   I      D +A  VTD  G+   
Sbjct: 405 LTIGDDLYTDWDAFEAKVKQALNQFDLKP--AFIKNIIEKLSEHDDKAGYVTDKKGKPKA 462

Query: 584 DTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQ 643
           D+NL + E +P +++I DYF  EV  + PDA+ +         +  ++GYEINF ++FY 
Sbjct: 463 DSNLRDAEKIPLVQNIDDYFEEEVLKYYPDAWYEN--------KKNKIGYEINFTQYFYI 514

Query: 644 YQPSRKLQDIDAELKGVEAQIATLLEE 670
           Y+P R L++I++++  V A+I  LL+E
Sbjct: 515 YEPPRSLEEIESDISKVTAEIQELLKE 541


>gi|295697500|ref|YP_003590738.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
 gi|295413102|gb|ADG07594.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
          Length = 613

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 197/623 (31%), Positives = 300/623 (48%), Gaps = 82/623 (13%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             G    + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV E   + 
Sbjct: 2   ENGQLTWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLEMKASL 61

Query: 63  GGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116
             + I     +    AG +FYNTS ++L  L +  +R     +  +Y+  FS N + I +
Sbjct: 62  DKAGITHQDAALRMAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIID 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNF--SGIELHPD------------TVPDRVMSNIYEHL 162
           +F+F + I RL KA  L  + + F    I L P              + +  M  I+E L
Sbjct: 122 NFEFRNQIPRLAKADALGTLIEKFLDPSINLSPQPVLGSDGSVRLPGLDNHAMGTIFEEL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +RRF  E +E A +  TPRD V L   L+ +P     +  P     LYD  CGTGG LT 
Sbjct: 182 VRRFNEENNEEAGEHWTPRDAVRLMAHLVFEPIADRIESGPYP---LYDGACGTGGMLTV 238

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--- 279
           A   +            +   GQE+  ET+A+C A +L++        D + NI  G   
Sbjct: 239 AEETLLQLAKERGKQVSVHLFGQEINAETYAICKADLLLKG-----EGDAADNIVGGPEH 293

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPKI 331
           STLS D F G+ F + LSNPP+GK W+ D + +  +    +  RF           + + 
Sbjct: 294 STLSNDAFPGRTFDFMLSNPPYGKSWKSDLERMGGKA-GIKDPRFVVQHRGEELSLITRS 352

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           SDG MLFL+++ +K++     G R A V + S LF G AG GES IRRW++END +EAIV
Sbjct: 353 SDGQMLFLVNMLSKMKHDTPLGSRIAEVHNGSSLFTGDAGQGESNIRRWIIENDWLEAIV 412

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRR 450
           ALP ++F+ T IATY+W+L+NRK   R+G+VQLI+AT  +  +R N GKK   ++++  R
Sbjct: 413 ALPLNMFYNTGIATYVWVLTNRKPGHRKGRVQLIDATQWYKPLRKNLGKKNCELSEEDIR 472

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           ++LD ++  E  + S++     FGY ++ V RPLR+   +D       +     R+ +  
Sbjct: 473 RVLDTFLKFEETEQSKIFPNAAFGYWKVTVERPLRLKG-IDPERAYTAKEIKALRETAER 531

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                 +   P++++I+  G A   +                                  
Sbjct: 532 -----AEDAPPVIKKIHKPGTAPDPLHGLF------------------------------ 556

Query: 571 ADPVTDVN---GEWIPDTNLTEY 590
            + V        E+ PDT L + 
Sbjct: 557 -EVVIAGKPRVVEYEPDTELRDT 578


>gi|323351171|ref|ZP_08086827.1| type I restriction-modification [Streptococcus sanguinis VMC66]
 gi|322122395|gb|EFX94106.1| type I restriction-modification [Streptococcus sanguinis VMC66]
          Length = 702

 Score =  528 bits (1361), Expect = e-148,   Method: Composition-based stats.
 Identities = 213/703 (30%), Positives = 320/703 (45%), Gaps = 78/703 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + +S  N +W  A  L G ++   +  VI+P  +L RLE AL PT+  V   Y   
Sbjct: 13  KNDVNISSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQVIAAYKKD 72

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +    +    ++GY +YNTS ++L  L         N  +Y+  +S   K I E+  F
Sbjct: 73  KKT--PEQILEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKF 130

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +  L + G L+ + K FS I+L P TV    M  ++E +IRRF    +E A    TP
Sbjct: 131 KEQVHTLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LLL   D        +++ + D   GTGG L  A +++    S   +    
Sbjct: 189 REVIALMVNLLLVEADEELFVDKRIVK-ILDMAAGTGGMLATAKSYIRRLNSEVNVL--- 244

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNP 299
              GQE   ET+ +  A MLIR+  SD             TL   D F  K+ ++ ++NP
Sbjct: 245 -LFGQEYLSETYGIGRADMLIRQENSDYFVKT-------DTLKDGDPFADKKMNFVIANP 296

Query: 300 PFGKKWEKD-----------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           PFG+ W              KD    E  +G  GRF    P   D  +LF +H   KLE 
Sbjct: 297 PFGQSWGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKLEK 355

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRAAI+ + SPLF+G   SGES+IRR++LENDL+EAI+ALP   F+ T I  Y+W
Sbjct: 356 ----NGRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIW 411

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           I +  K  +RR KVQ I+AT+ +  +R   G+KRR +++D  RQI+  Y + E     ++
Sbjct: 412 IYNKNKAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKI 471

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            D + F Y+   V++PL+    + +  + ++++     KL   +Q   L  ++P      
Sbjct: 472 FDNKEFLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDE 531

Query: 528 PYGWAESFVKESIKSNEAKTL-----------------------KVKASKSFIVAFINAF 564
                 +  K   +                              +VK + + + A   A 
Sbjct: 532 KKLQDLAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLSEVKVTPANVNAIALAM 591

Query: 565 GRKDPRADPVTDVN----GE----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA-- 614
              D  A+ VT       GE     + D    + E V   E+++DYF REV PHVPDA  
Sbjct: 592 SEMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTENVEDYFAREVYPHVPDAHY 651

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           + D+             G EI F R+FYQYQ       + AE 
Sbjct: 652 WFDEGKGY---------GAEIPFTRYFYQYQAPESADKLLAEF 685


>gi|324991450|gb|EGC23383.1| type I restriction-modification [Streptococcus sanguinis SK353]
 gi|332362404|gb|EGJ40204.1| type I restriction-modification [Streptococcus sanguinis SK1056]
          Length = 702

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 212/703 (30%), Positives = 318/703 (45%), Gaps = 78/703 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + +S  N +W  A  L G ++   +  VI+P  +L RLE AL PT+  V   Y   
Sbjct: 13  KNDVNISSDVNTVWSIANTLRGAYRADKYRDVIIPMFVLARLEAALLPTKDQVIAAYKKD 72

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +    +    ++GY +YNTS ++L  L         N  +Y+  +S   K I E+  F
Sbjct: 73  KKT--PEQILEDISGYKYYNTSPFTLENLQNDPDAIEENFLAYLDGYSKRVKDIIENLKF 130

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +  L + G L+ + K FS I+L P TV    M  ++E +IRRF    +E A    TP
Sbjct: 131 KEQVHTLAQTGRLFTVIKKFSKIDLSPSTVDSMRMGYMFEDIIRRFSE--NEEAGSHYTP 188

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   LLL   D        +++ + D   GTGG L  A +++    S   +    
Sbjct: 189 REVIALMVNLLLVEADEELFVDKRIVK-ILDMAAGTGGMLATAKSYIRRLNSEVNVL--- 244

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNP 299
              GQE   ET+ +  A MLIR+  SD             TL   D F  K+ ++ ++NP
Sbjct: 245 -LFGQEYLSETYGIGRADMLIRQENSDYFVKT-------DTLKDGDPFADKKMNFVIANP 296

Query: 300 PFGKKWEKD-----------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           PFG+ W              KD    E  +G  GRF    P   D  +LF +H   KLE 
Sbjct: 297 PFGQSWGGKDADDGVEQAVKKDQELFEATDGRQGRF-VNTPATGDAQLLFHLHGLAKLEK 355

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRAAI+ + SPLF+G   SGES+IRR++LENDL+EAI+ALP   F+ T I  Y+W
Sbjct: 356 ----NGRAAIISNGSPLFSGGTTSGESQIRRYILENDLLEAIIALPGQFFYNTGIGIYIW 411

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           I +  K  +RR KVQ I+AT+ +  +R   G+KRR +++D  RQI+  Y + E     ++
Sbjct: 412 IYNKNKAPKRRNKVQFIDATEEFVPLRKSLGQKRRELSEDNIRQIIQWYHNFEENDHVKI 471

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            D + F Y+   V++PL+    + +  + ++++     KL   +Q   L  ++P      
Sbjct: 472 FDNKEFLYKEYIVMQPLQRRGRITEDTIEKVKSVPFVAKLYDEYQYQELLEMEPRTANDE 531

Query: 528 PYGWAESFVKESIKSNEAKTL-----------------------KVKASKSFIVAFINAF 564
                 +  K   +                              +VK + + + A     
Sbjct: 532 KKLQDLAAGKTKQEQLLNALRLGITDDSYPNFEEFSQVIRELLSEVKVTPANVNAIALTM 591

Query: 565 GRKDPRADPVTDVN----GE----WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA-- 614
              D  A+ VT       GE     + D    + E V   E ++DYF REV PHVPDA  
Sbjct: 592 SEMDKTAEIVTTTKKDKFGEIADGIVYDKTTKDSEIVKLTEDVEDYFAREVYPHVPDAHY 651

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAEL 657
           + D+             G EI F R+FYQYQ       + AE 
Sbjct: 652 WFDEEKGY---------GAEIPFTRYFYQYQAPESADKLLAEF 685


>gi|268325015|emb|CBH38603.1| putative type I restriction enzyme, M subunit [uncultured archaeon]
          Length = 573

 Score =  522 bits (1344), Expect = e-146,   Method: Composition-based stats.
 Identities = 215/575 (37%), Positives = 315/575 (54%), Gaps = 30/575 (5%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  F       ANFIW+ A+D L G FK  ++G+VILPF +LRRL+C LE  + AV    
Sbjct: 1   MNNFQDK----ANFIWQVADDILRGTFKQHEYGEVILPFVVLRRLDCVLEEHKDAVIATN 56

Query: 60  LAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115
             F     D    +     G +FYNTS Y L  L     N   N  +YI  +S N + + 
Sbjct: 57  NKFKDVLPDPAQVLLHATNGLNFYNTSYYDLRRLAQDAGNVELNFNNYINGYSANVREMI 116

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E+F     +A+L K  L++ +   F+ I+LHPD V +  M  I+E L+RRF    +E A 
Sbjct: 117 ENFQIDKIVAKLVKNDLMFMLVAKFTEIDLHPDVVANHEMGYIFEELLRRFSEMSNETAG 176

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L   LL     A   +  G+IRT++DP CGTGG LT A  H+        
Sbjct: 177 EHYTPREVIRLMVNLLFAEHQAEL-QGKGIIRTVFDPACGTGGMLTIAKEHIQQ---KIN 232

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +V +GQEL  +T+A+  + +LI   E+D       NI+ G++ S+D F G +F+Y 
Sbjct: 233 PDVEIVMYGQELNEQTYAIAKSDVLIMGEEAD-------NIRPGTSFSEDKFKGNKFNYM 285

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPFG  W+K+++ ++ E  N   GRF  GLP++SDG+++FL H+ +K+E     G R
Sbjct: 286 LSNPPFGVSWKKEQEFIKDEA-NDPYGRFHAGLPRVSDGALMFLQHMISKMEPR---GSR 341

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AI+ + SPLF G AGSGES IR+W++END +EAI+ALPT+LF+ T IATY+WI+SNRK 
Sbjct: 342 IAIIFNGSPLFTGDAGSGESNIRKWIIENDWLEAIIALPTELFYNTGIATYIWIVSNRKP 401

Query: 416 EERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           E+R GKVQLINA   +  +R   G KR  +++ Q +++  IY   E G+  ++ D   FG
Sbjct: 402 EKRIGKVQLINAVGYYKKMRKSLGNKRNYVSEAQIQELTGIYSQFEEGENCKIFDNDYFG 461

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRK-----LSPLHQSFWLDILKPMMQQIYPY 529
           Y +I V RPL     + +   ++ + D + R      L      ++   +KP +   +  
Sbjct: 462 YNKITVERPLMEHSEMVRDKRSKPKPDTSLRDYEKVPLIEDVDEYFDREVKPHVADAWMD 521

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
              +    E   +      K   +   I A I A 
Sbjct: 522 RSKDKVGYELNFTKYFYEYKPLRALKEIKADILAL 556



 Score =  163 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 8/105 (7%)

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEI 628
             ++ V D   +  PDT+L +YE VP +E + +YF REV PHV DA++D+          
Sbjct: 473 EHSEMVRDKRSKPKPDTSLRDYEKVPLIEDVDEYFDREVKPHVADAWMDRSKD------- 525

Query: 629 GRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            +VGYE+NF ++FY+Y+P R L++I A++  +E +   LL+E+  
Sbjct: 526 -KVGYELNFTKYFYEYKPLRALKEIKADILALEGETEGLLKEILG 569


>gi|158520293|ref|YP_001528163.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509119|gb|ABW66086.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 569

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 204/523 (39%), Positives = 288/523 (55%), Gaps = 25/523 (4%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  F       ANFIW+ A+D L G FK  ++G VILPF + RRL+C L   +  + + Y
Sbjct: 1   MNNFQDK----ANFIWQVADDILRGTFKQHEYGDVILPFVVFRRLDCVLNGKKDEIIDTY 56

Query: 60  LAFGGSNIDLES--FVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIF 115
             F     D  +       G  FYN S Y L  L     N   N  +YI  +S N + I 
Sbjct: 57  KKFQKKLDDPSAVVLQATGGLKFYNVSLYDLQRLTQDAGNIEANFNNYINGYSKNVREII 116

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           ++F     IA+L K  LL+ +   F+ I+LHPD V +  M  I+E L+RRF    +E A 
Sbjct: 117 DNFSIEKIIAKLAKNELLFMLVDKFTEIDLHPDKVKNHEMGYIFEELLRRFSEMSNETAG 176

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L   LL        K   G++R++YDP CGTGG LT    H+     H  
Sbjct: 177 EHYTPREVIRLMVNLLFAEQKEELK-GKGIVRSVYDPACGTGGMLTITKEHIQ---KHIN 232

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++  GQEL  +T+A+  + +L+   E D       NI+ G++ S D F  KRF++ 
Sbjct: 233 PKLEVILFGQELNEQTYAIAKSDVLMTGGEPD-------NIKLGTSFSNDQFRDKRFNFM 285

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPFG  W+K++  +  E +    GRF  GLP++SDG+MLFL H+ +K+E     G R
Sbjct: 286 LSNPPFGVSWKKEQSFINNEAE-DPGGRFHAGLPRVSDGAMLFLQHMISKMEPT---GSR 341

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AI+ + SPLF G AGSGES IR+W++E+D +EAIVALPT+LFF T IATY+WI++NRK 
Sbjct: 342 IAIIHNGSPLFTGDAGSGESNIRKWIIESDWLEAIVALPTELFFNTGIATYIWIVTNRKP 401

Query: 416 EERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             RRGKVQL+NA      +R   G KR  I  +Q +QI DIY   ++G+F ++ D   FG
Sbjct: 402 AHRRGKVQLVNAVSFAQKMRKSLGSKRNFITTEQIQQITDIYTGFKDGEFCKVFDNEDFG 461

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           + ++ V RP      + K      + D + R    +     +D
Sbjct: 462 FTKVTVERPEMKKDKIVKDKNGNPKPDTSLRDYEKIPLKVDID 504



 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 8/102 (7%)

Query: 572 DPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
             V D NG   PDT+L +YE +P    I +YF REV PHVPDA++D+           +V
Sbjct: 476 KIVKDKNGNPKPDTSLRDYEKIPLKVDIDEYFKREVLPHVPDAWMDRSKD--------KV 527

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           GYEINF ++FY+YQP R L +I A++  +E +   LL E+ +
Sbjct: 528 GYEINFTKYFYKYQPLRSLDEIKADILALEKETDGLLSEVLS 569


>gi|226949373|ref|YP_002804464.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto]
 gi|226841985|gb|ACO84651.1| N-6 DNA methylase [Clostridium botulinum A2 str. Kyoto]
          Length = 571

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 206/551 (37%), Positives = 294/551 (53%), Gaps = 33/551 (5%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +    AN IW  A+ L G +K  ++G+VILP T++RR +C L  T+ +V +K    G  
Sbjct: 5   NNINEKANLIWAIADKLTGVYKPHEYGEVILPLTVIRRFDCVLADTKESVLKKNEQVGNL 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +      K AGY FYN S++    L         N   YI  FS+N + I E F+F + 
Sbjct: 65  PMKDVFLCKEAGYDFYNISKFDFQKLLSDPDGIEANFRVYINGFSENVRNIIEKFNFDNQ 124

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I RL +  LLY + + F     +LHP  + +  M  I+E +IRRF    +E A    TPR
Sbjct: 125 ITRLAEKNLLYIVIQEFVTPNADLHPSKISNLEMGYIFEEIIRRFSEAHNEDAGQHYTPR 184

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V+ L   +L   D  L   +  + +T+YDP CGTGG L+ A +++       ++    +
Sbjct: 185 EVIELMVNILFYNDSELLTGN--IAKTIYDPACGTGGMLSVAEDYLKKLNKDAEL----I 238

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE+  +T+A+C A MLI+   +D       NI+ G+TLS D F   R+ Y LSNPPF
Sbjct: 239 AFGQEINDQTYAICKADMLIKGANAD-------NIKNGNTLSDDQFKEDRYDYILSNPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G++W+ DK AVE E K G  GRFG G+P + DG MLFL     K++     G R AI+ +
Sbjct: 292 GREWKNDKKAVETEAKLGFAGRFGAGVPAVGDGQMLFLETAIAKMKPQ---GSRIAIIHN 348

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K + R+GK
Sbjct: 349 GSPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKPDYRKGK 408

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLINA  L+   R   G KR  I  +   +I  +Y   +  + S++ D + FGY +I V
Sbjct: 409 VQLINANGLYEKRRKSLGNKRNDIPKEYIDEITKLYGEFKKSEISKIFDNKDFGYSKIVV 468

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYGWAESFVKES 539
            RP               +     +K  P+  +   D    P+ + I  Y   E      
Sbjct: 469 ERPKLKE-----------DGTPELKKGKPVTDTSLRDTENVPLKEDINEYFKREVIPFAP 517

Query: 540 IKSNEAKTLKV 550
               + K  KV
Sbjct: 518 DAWIDEKKTKV 528


>gi|311741898|ref|ZP_07715709.1| type I restriction-modification system DNA-methyltransferase
           [Aeromicrobium marinum DSM 15272]
 gi|311314904|gb|EFQ84810.1| type I restriction-modification system DNA-methyltransferase
           [Aeromicrobium marinum DSM 15272]
          Length = 581

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 210/483 (43%), Positives = 293/483 (60%), Gaps = 19/483 (3%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            ++L NFIW  A+ L G +K   +G VILP T+LRRL+C +EPTR  VR           
Sbjct: 1   MSNLGNFIWSIADQLRGVYKPHQYGNVILPMTILRRLDCIMEPTRDEVRALTAKHDNPGA 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 +  G  F+NTS++  ++L       R NL  Y+  FS N   +FE F F + IA
Sbjct: 61  LALQVKRATGLGFHNTSQFDFASLLADPDGLRANLVDYLTKFSANI-DVFERFKFENEIA 119

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L++   LY + + F+ ++LHPD VP+  M +++E LIR+F    +E A +  TPRD + 
Sbjct: 120 TLDEKNRLYLVVEKFAEVDLHPDVVPNAAMGDLFEELIRKFAEASNEEAGEHYTPRDAIR 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   +       PG +R++YDPT GTGG L+ A   + +  S  ++      +GQ
Sbjct: 180 LMVDLLFAEEQEGL-LEPGTVRSIYDPTAGTGGMLSVAEERLLERNSDARL----TLYGQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  +++A+C + M+ +  +       S NI+ G TLS DLF G+ F +C+SNPP+G  W
Sbjct: 235 ELNDQSYAICKSDMIAKGQD-------SSNIRLGDTLSDDLFAGRTFDFCMSNPPYGVDW 287

Query: 306 EKDKDAVEKE-HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +  + +V++E  ++GE GRFGPGLP +SDG MLFL HLA+K+     GGGR  IVL+ SP
Sbjct: 288 KAAEKSVKEERARDGEHGRFGPGLPSVSDGQMLFLTHLAHKMRPEHEGGGRVGIVLNGSP 347

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSG SEIRRWLLE DL+EAIVALPTD+FF T I+TY+WIL N K  ERRGKVQL
Sbjct: 348 LFNGAAGSGPSEIRRWLLETDLVEAIVALPTDMFFNTGISTYIWILDNTKRAERRGKVQL 407

Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSREN--GKFSRMLDYRTFGYRRIKVL 481
           I+A+ + T +R   G KR+ I+   R ++L +Y + +      S++ D   FGY  I V 
Sbjct: 408 IDASGMGTKMRKSLGSKRKEIDTTSRERVLALYDAFDEADPDLSKVFDTTEFGYWTITVE 467

Query: 482 RPL 484
           RPL
Sbjct: 468 RPL 470



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 47/118 (39%), Positives = 61/118 (51%), Gaps = 20/118 (16%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLES------------IQDYFVREVSPHVPDAY 615
           D + DPVTD  G   PD+   + EN+P+               I+ YF  EV PHVPDA+
Sbjct: 472 DDKGDPVTDRKGIRKPDSKKRDTENIPFNYGGNTTGDHGRDATIKAYFDAEVLPHVPDAW 531

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           ID         +  +VGYEI F R FY Y P R L +IDA+L+   A+I  LL E+  
Sbjct: 532 IDH--------KKTKVGYEIPFTRHFYTYVPPRPLAEIDADLEKQVAKILELLREVEG 581


>gi|124515148|gb|EAY56659.1| putative N-6 DNA methylase [Leptospirillum rubarum]
          Length = 581

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 217/487 (44%), Positives = 304/487 (62%), Gaps = 19/487 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + +  A F+W  A+ L GD+K  D+GKVILPFT+LRRL+C LEPT++ V ++Y +  
Sbjct: 1   MGSNFSEKAAFLWSVADLLRGDYKQADYGKVILPFTVLRRLDCVLEPTKNQVLQEYESRK 60

Query: 64  GSNIDL--ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFD 119
            S I       +KV+G  FY+ S ++ S L     + R NLESY+  FS+NA+ +FE F 
Sbjct: 61  NSGIADLSPFLLKVSGQKFYSVSRFTFSKLLDDPPHIRQNLESYLGDFSENARDVFERFR 120

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F   I+ L+   LL+ I + F+ I+LHPD VP+  M  I+E LIRRF    +E A +  T
Sbjct: 121 FGEQISNLDSKNLLFMIVQKFATIDLHPDQVPNEEMGLIFEELIRRFAETSNETAGEHFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+V+ L   +L   DD      PG++R+LYDP  GTGG L+ A +++ +     ++   
Sbjct: 181 PREVIRLMVNILFVADDEALS-KPGVVRSLYDPAAGTGGMLSVAEDYLREHNPDMRL--- 236

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               GQEL  E++++C A M+I+  + +        I  G++ ++D F   +F Y LSNP
Sbjct: 237 -TVFGQELNDESYSICKADMMIKGQDPNR-------IVSGNSFTQDGFPHDKFDYMLSNP 288

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PFG  W+K +D V+ EH+    G    G  LP++SDGS+LFL+HL +K+  P  GG R  
Sbjct: 289 PFGVDWKKIQDVVKNEHERKGYGGGRFGPGLPRVSDGSLLFLLHLLSKMRPPGEGGSRIG 348

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IVL+ SPLF G AGSGESEIRRW+LEND +EAI+A+PTDLF+ T IATY+WILSNRK+ E
Sbjct: 349 IVLNGSPLFTGDAGSGESEIRRWILENDFLEAIIAMPTDLFYNTGIATYIWILSNRKSPE 408

Query: 418 RRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R  KVQLINA DL+  +R   G KR  + D+  R+I  IY   EN   S++ D + FG+R
Sbjct: 409 RTNKVQLINAVDLYAKMRKSLGNKRNYLTDENIREITRIYGEFENKGISKIFDTQDFGFR 468

Query: 477 RIKVLRP 483
           +I V RP
Sbjct: 469 KITVDRP 475



 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/103 (46%), Positives = 70/103 (67%)

Query: 570 RADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIG 629
               V    G+   D +L + ENVP  E I +YF REV PHVP+A+I++   D KD ++G
Sbjct: 478 SGKTVKVKKGQKPYDPDLRDTENVPLKEDINEYFEREVKPHVPEAWINEEIRDAKDGKVG 537

Query: 630 RVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +VGYEINFNR+FY Y+P R L++I A+LK VE++I  +L+++ 
Sbjct: 538 KVGYEINFNRYFYVYKPPRPLEEIKADLKAVESRILEILKQVT 580


>gi|282849444|ref|ZP_06258829.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745]
 gi|282581148|gb|EFB86546.1| N-6 DNA Methylase [Veillonella parvula ATCC 17745]
          Length = 574

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 214/578 (37%), Positives = 306/578 (52%), Gaps = 34/578 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
              A+ IW  A+ L G +K  ++G+VILP T+LRR +C L  T+ AV + Y      ++D
Sbjct: 8   NEKASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKPAVLDTYNKLKDQDLD 67

Query: 69  LESF--VKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           L      +VAG+ FYN S+Y+  TL     N  +N   YI  FSDN + I   F F + I
Sbjct: 68  LLDGLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHI 127

Query: 125 ARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             +    +LY + K F+     LHPD + +  M  ++E +IRRF    +E A    TPR+
Sbjct: 128 TTMADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPRE 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   +L   D+A+      + RT+YD  CGTGG L+ A  ++A+  S  K+      
Sbjct: 188 VIRLMVNILFHDDNAVLSGQ-NVARTIYDCACGTGGMLSVAEEYLANLNSTSKLIS---- 242

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL  +T A+C A MLI+  +       ++ I+ G+TLS D F+G+ F Y +SNPPFG
Sbjct: 243 FGQELNDQTFAICKADMLIKGND-------AERIKSGNTLSDDQFSGEIFDYIISNPPFG 295

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           ++W+ ++  V+ E K G  GRFGPGLP  SDG MLFL +   K+      G R AI+ + 
Sbjct: 296 REWKNEEAIVKNEAKLGFDGRFGPGLPSTSDGQMLFLENAIKKMNPQ---GSRIAIIHNG 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-GK 421
           SPLF G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K    R GK
Sbjct: 353 SPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREGK 412

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLINA DL+   R   G KR  I +   ++I  IY      + S++ D   FGY +I V
Sbjct: 413 VQLINANDLYEKRRKSLGNKRNDIPESATQEITKIYGEFRETEISKIFDNEDFGYTKITV 472

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
            RP     +LD+ G   L           +        + P+ + I  Y   E       
Sbjct: 473 ERP-----VLDENGKPVLVKGKP-----KVDTKRRDSEIVPLKEDIETYFKREVLPFAPD 522

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
              + K  K+     F   F      + P  + + ++ 
Sbjct: 523 AWIDTKKNKIGYEIPFTRHFYKYVAPR-PSGEIMAEIK 559



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 9/105 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D    PV  V G+   DT   + E VP  E I+ YF REV P  PDA+I        D +
Sbjct: 478 DENGKPVL-VKGKPKVDTKRRDSEIVPLKEDIETYFKREVLPFAPDAWI--------DTK 528

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
             ++GYEI F R FY+Y   R   +I AE+K +E+ +   L E+ 
Sbjct: 529 KNKIGYEIPFTRHFYKYVAPRPSGEIMAEIKALESDLDGALVEVF 573


>gi|303229050|ref|ZP_07315856.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516261|gb|EFL58197.1| N-6 DNA Methylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 574

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 210/567 (37%), Positives = 297/567 (52%), Gaps = 33/567 (5%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
              A+ IW  A+ L G +K  ++G+VILP T+LRR +C L  T+SAV + Y       +D
Sbjct: 8   NEKASLIWAIADKLTGVYKPHEYGEVILPLTVLRRFDCILADTKSAVLDTYNKLKDQKLD 67

Query: 69  --LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                  +VAG+ FYN S+Y+  TL     N  +N   YI  FSDN + I   F F + I
Sbjct: 68  LLDGLLYEVAGHKFYNISKYTFKTLLDDPDNIESNFRDYINGFSDNVQDIIRKFKFDNHI 127

Query: 125 ARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             +    +LY + K F+     LHPD + +  M  ++E +IRRF    +E A    TPR+
Sbjct: 128 TTMADKHILYMVIKEFTTDKANLHPDHISNLEMGYVFEEIIRRFSEAHNEDAGQHYTPRE 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   +L   D+A+      + RT+YD  CGTGG L+ A  ++A+  S  K+      
Sbjct: 188 VIRLMVNILFHDDNAVLSGQ-NVARTIYDCACGTGGMLSVAEEYLANLNSTSKLIS---- 242

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQEL  +T A+C A MLI+  +       ++ I+ G+TLS D F+ + F Y +SNPPFG
Sbjct: 243 FGQELNDQTFAICKADMLIKGND-------AERIKSGNTLSDDQFSAETFDYIISNPPFG 295

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           ++W+ ++  V+ E K G  GRFGPGLP  +DG MLFL +   K+      G R AI+ + 
Sbjct: 296 REWKNEEAIVKNEAKLGFDGRFGPGLPSTADGQMLFLENAIKKMNPQ---GARIAIIHNG 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-GK 421
           SPLF G AGSG SEIRR++LENDL+EAI+ALP D+F+ T IATY+W+LSN+K    R  K
Sbjct: 353 SPLFTGDAGSGPSEIRRYILENDLLEAIIALPNDIFYNTGIATYIWVLSNKKAGTPREEK 412

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           VQLINA DL+   R   G KR  I +   ++I  IY      + S++ D   FGY +I V
Sbjct: 413 VQLINANDLYEKRRKSLGNKRNDIPESAIQEITKIYGEFRETEISKIFDNEDFGYTKITV 472

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
            RP     +LD+ G   L                    + P+ + I  Y   E       
Sbjct: 473 ERP-----VLDEDGKPVLVKGKP-----KADTKRRDTEIVPLKEDIETYFKREVLPFAPD 522

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRK 567
              + K  K+     F   F      +
Sbjct: 523 AWIDTKKNKIGYEIPFTRHFYKYVAPR 549


>gi|71900229|ref|ZP_00682367.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71730002|gb|EAO32095.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 819

 Score =  511 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 190/620 (30%), Positives = 301/620 (48%), Gaps = 58/620 (9%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 27  MQKTQQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 86

Query: 57  EKYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110
           E+       N+     +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 87  ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 146

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++                 + +  M 
Sbjct: 147 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 206

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 207 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 263

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++          ++NI
Sbjct: 264 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 318

Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327
             G   STLS D F  + F + +SNPP+GK W+ D D +  + K     RF         
Sbjct: 319 VGGADKSTLSADQFPSRAFDFMISNPPYGKSWKTDLDRMGGK-KKFSDPRFIVSHGGDSE 377

Query: 328 ---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L + SDG ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEN
Sbjct: 378 FKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 437

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443
           D +EAI+ALP ++F+ T IATY+W+L+N+K + RRGKVQLI+A+  +  + RN GKK   
Sbjct: 438 DWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCE 497

Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +      +ILD+Y+ + +    S+  D + FGY +I + RPLR+   L    +  L    
Sbjct: 498 LGAADIARILDLYLGQTQEAAQSKWFDTQDFGYLKITIERPLRLKSQLSDERIESLRFAT 557

Query: 503 TWRKLSPLHQSFWLDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
               L     +   + L           +  ++        +S   +S   NEA   +  
Sbjct: 558 GEEALRAEIYATHGEALYTEFAKCKPAIEAWLKGEDENEDDDSDDSDSGDDNEAPAARKA 617

Query: 552 ASKSFIVAFINAFGRKDPRA 571
                    ++A   +  +A
Sbjct: 618 VPVKRRKKLLDASTWQRDKA 637



 Score =  195 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 42/209 (20%)

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
              +L    TW++         +++ +   Q +    + +     +      K    + S
Sbjct: 622 RRKKLLDASTWQR-----DKALMEVAQRAQQALGRAVFDDHNAFCAGFDAVCKAQDARLS 676

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWIPDTN 586
                A   A   +D  A PV                                E+ PD+ 
Sbjct: 677 APEKKAIYKAVSWRDDAALPVIAKRSKLNAGECFEPGFDGAYLETVGKDRFMVEYEPDSA 736

Query: 587 LTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           L + E VP  E   I  +F REV PH PDA+I             ++GYEI+F R+FY+ 
Sbjct: 737 LRDTEQVPLQEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARYFYKP 788

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            P R L +I A++  +E Q   LL ++ +
Sbjct: 789 VPLRTLAEIRADILALEQQTEGLLHKIVS 817


>gi|315446767|ref|YP_004079646.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315265070|gb|ADU01812.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 578

 Score =  509 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 207/483 (42%), Positives = 287/483 (59%), Gaps = 20/483 (4%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L NF+W  A+ L G +K   +G VILPFT+LRRL+C LEPTR  VRE    + G  +
Sbjct: 1   MSKLGNFVWGIADQLRGVYKPHQYGGVILPFTILRRLDCTLEPTREEVRELAEKYSGGAL 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           D++   +  G +FYNTS +    L       R NL  YI  FS N   +FE F F + +A
Sbjct: 61  DVQ-VKRKTGLAFYNTSPFDFKLLLKDPEGLRANLMDYITGFSANI-DVFERFKFENELA 118

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L++   LY +   F+ ++LHP++V +  M +++EHLI +F    +E A +  TPRD + 
Sbjct: 119 TLDEKNRLYLVTSQFAEVDLHPNSVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIR 178

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   D+      PG +RT+YDPT GTGG L+ A   + +     ++      +GQ
Sbjct: 179 LMVDLLFAEDNVAL-LEPGTVRTIYDPTAGTGGMLSVAEERLLERNPGARL----RLYGQ 233

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+  +++A+C + M+ +  +         NI+ G TL  DLF  + F +C+SNPP+G  W
Sbjct: 234 EINDQSYAICKSDMIAKGQDV-------GNIKLGDTLEDDLFFDRTFDFCMSNPPYGVDW 286

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +  + +V+KE       RF  GLP I DG MLFL HLA+K+    +GGGRA IVL+ SPL
Sbjct: 287 KASQKSVKKEA-LASNSRFSHGLPSIGDGQMLFLSHLASKMRPAHDGGGRAGIVLNGSPL 345

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG A SG S IR+WLLE DL+EAIVALPT++FF T IATY+WIL N K  ER GK+QLI
Sbjct: 346 FNGAAESGPSLIRQWLLETDLLEAIVALPTNMFFNTGIATYIWILDNAKRTERAGKIQLI 405

Query: 426 NATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVLR 482
           +AT  WT +R   G K R ++ D R QIL +Y S + G   +S++     FGY  + V R
Sbjct: 406 DATSFWTKMRKSLGSKNRELDADARDQILALYDSFDEGDPDYSKVFTANDFGYWSVTVER 465

Query: 483 PLR 485
           PLR
Sbjct: 466 PLR 468



 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 20/117 (17%)

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDA 614
           +       TD  G   PD  L + EN+P+             E+I+ YF  EV PHVPDA
Sbjct: 468 RTETGKVSTDRKGNPKPDAKLRDTENIPFTYGGNTAGDAARAETIEAYFEAEVLPHVPDA 527

Query: 615 YIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ++D            +VGYEI F R FY+Y P R L +ID++L    A+I  LL E+
Sbjct: 528 WVDVAK--------TKVGYEIPFARHFYKYVPPRPLAEIDSDLDKQVAKILELLREV 576


>gi|71276007|ref|ZP_00652289.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71899047|ref|ZP_00681212.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71163240|gb|EAO12960.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71731160|gb|EAO33226.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 793

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 189/619 (30%), Positives = 301/619 (48%), Gaps = 59/619 (9%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 1   MQKTQQDQSQIKWISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 60

Query: 57  EKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110
           E+       N+  +  +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 61  ERKKFLDAHNVAEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++                 + +  M 
Sbjct: 121 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLNPEVNLAPLPVKDADGRIKLPALDNHGMG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 181 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 237

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++          ++NI
Sbjct: 238 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAQNI 292

Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327
             G   STLS D F  + F + +SNPP+GK W+ D + +  + K     RF         
Sbjct: 293 VGGADKSTLSADQFHSRAFDFMISNPPYGKSWKTDLERMGGK-KGFSDPRFIVSHGGDSE 351

Query: 328 ---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L + SDG ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEN
Sbjct: 352 FKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 411

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443
           D +EAI+ALP ++F+ T IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   
Sbjct: 412 DWLEAIIALPLNIFYNTGIATYIWVLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCE 471

Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +      +ILD+Y+ + +    S+  D + FGY +I + RPLR+   L    +  L    
Sbjct: 472 LGAADIARILDLYLGQTQEAAQSKWFDTQDFGYWKITIERPLRLKSQLSDERIESLRFAT 531

Query: 503 TWRKLSPLHQSFWLDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
               L     +   + L           +  ++        ++   +S   NEA   +  
Sbjct: 532 GDEALRAELYATHGEALYTEFAKRKPAIEAWLKGEDENEDDDNEDSDSGDDNEAPAARKA 591

Query: 552 ASKSFIVAFINAFGR-KDP 569
                    ++A    +D 
Sbjct: 592 VPAERRKKLLDASTWQRDK 610



 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           +      +L    TW++         +++ +   Q +    + +     +      K   
Sbjct: 592 VPAERRKKLLDASTWQR-----DKVLMEVAQRAQQTLGRAVFDDHNAFCAGFDAVCKAQD 646

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWI 582
            + S     A   A   +D  A PV                                E+ 
Sbjct: 647 ARLSAPEKKAIYKAVSWRDDAALPVITKRSKLKAGDYFEPGFDGAYLETVGKDRFMVEYE 706

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD+ L + E VP  E   I  +F REV PH PDA+I             +VGYEI+F+R+
Sbjct: 707 PDSALRDTEQVPLKEPGGIDAFFSREVLPHAPDAWIATNK--------TQVGYEISFSRY 758

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L +I A++  +E Q   LL ++  
Sbjct: 759 FYKPVPLRTLAEIRADILVLEQQTEGLLHKIVG 791


>gi|189485040|ref|YP_001955981.1| type I restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170286999|dbj|BAG13520.1| type I restriction-modification system methylase subunit
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 570

 Score =  509 bits (1310), Expect = e-142,   Method: Composition-based stats.
 Identities = 202/509 (39%), Positives = 298/509 (58%), Gaps = 22/509 (4%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            S +  ANFIW  A+ L GDFK +++G+VILPFT+LRR +C L P +  + E       +
Sbjct: 2   SSFSDKANFIWSVADLLRGDFKQSEYGRVILPFTVLRRFDCVLAPHKDRILEINKTLTVT 61

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           N     F +  GY +YN S++S   L   S     NL  YI+ FSD+ +AI ++F+   T
Sbjct: 62  N-KAPVFKRCTGYDYYNISKFSFEKLRDDSNAVETNLRDYISGFSDDIRAILDNFEIGIT 120

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL+KA LLY I + F+ ++L   ++ +  M  ++E LIR+F  + +E A +  TPR+V
Sbjct: 121 IKRLKKANLLYLIVQKFAELDLDEKSIDNLTMGYMFEDLIRKFSEKSNETAGEHFTPREV 180

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LLL+ D  +     G +  +YDP CGTGG LT A   + +     K+    +P 
Sbjct: 181 IELMVDLLLEEDGDILNT-EGKVIKVYDPACGTGGMLTAAQKKLQEYNGKIKV----IPF 235

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQEL PET+A+C + M I+        +    I  G++ S+D F  ++F Y LSNPPFG 
Sbjct: 236 GQELNPETYAICKSDMSIKG-------NSQAGIVLGNSFSEDGFKDEKFDYMLSNPPFGV 288

Query: 304 KWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +W+K +  +  E +  G  GRFG G P+ISDGS+LFL ++ +K+    +GG R AIV + 
Sbjct: 289 EWKKVQSFILDEAEKQGFNGRFGAGTPRISDGSLLFLQNMISKMIPQKDGGSRIAIVFNG 348

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
           SPLF G AGSGESEIR+W++END +EA++ LP  LF+ T IATY+WILSNRK++ R+GK+
Sbjct: 349 SPLFTGDAGSGESEIRKWIIENDFLEAVIGLPDQLFYNTGIATYIWILSNRKSDRRKGKI 408

Query: 423 QLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           +L+N    +  +R   G KR  I+D  R  ++++Y   E  +     D   FGY++I + 
Sbjct: 409 RLVNGVSFFEKMRKSLGNKRNEISDKSRNALVNLYSMHEPDENYIDFDNSDFGYKKITID 468

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPL 510
           RPL      DK G   L+     +  + L
Sbjct: 469 RPL-----YDKDGKPELDKKGNKKPNAEL 492



 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
            D    P  D  G   P+  L + E VP  E + +YF REV P+VP A+I        D+
Sbjct: 472 YDKDGKPELDKKGNKKPNAELRDIETVPLKEDVNEYFKREVLPYVPGAWI--------DE 523

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
              + GYEI F R FY++ P R  Q+I  E++ ++  I    +E+ 
Sbjct: 524 SKTKTGYEIPFTRHFYKFVPLRSSQEIMKEIECLKKDIDEAFQELI 569


>gi|28199932|ref|NP_780246.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182682686|ref|YP_001830846.1| N-6 DNA methylase [Xylella fastidiosa M23]
 gi|28058063|gb|AAO29895.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182632796|gb|ACB93572.1| N-6 DNA methylase [Xylella fastidiosa M23]
 gi|307578970|gb|ADN62939.1| N-6 DNA methylase [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 793

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 188/620 (30%), Positives = 300/620 (48%), Gaps = 58/620 (9%)

Query: 1   MTEFTGSAASL---ANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A+  L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 1   MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVL 60

Query: 57  EKYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110
           E+       N+     +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 61  ERKKFLDAHNVVEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSRD 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++                 + +  M 
Sbjct: 121 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 181 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 237

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++          ++NI
Sbjct: 238 GGMLTVAEEALHALAEQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 292

Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327
             G   STLS D F  + F + +SNPP+GK W+ D D +  + K     RF         
Sbjct: 293 VGGADKSTLSADQFPSRAFDFMISNPPYGKSWKTDLDRMGGK-KGFSDRRFIVSHGGDPE 351

Query: 328 ---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L + SDG ++F ++   K++     G R A+V + S LF G AG GES IRRW+LEN
Sbjct: 352 FKLLTRSSDGQLMFQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 411

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443
           D +EAI+ALP ++F+ T IATY+W+L+N+K + RRGKVQLI+A+  +  + RN GKK   
Sbjct: 412 DWLEAIIALPLNIFYNTGIATYIWVLANKKAQARRGKVQLIDASQWFQPLRRNLGKKNCE 471

Query: 444 INDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +      +ILD+Y+ + +    S+  D + FGY ++ + RPLR+   L    +  L    
Sbjct: 472 LGAADIARILDLYLGQTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFAT 531

Query: 503 TWRKLSPLHQSFWLDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
               L     +   + L           +  ++        +S   +S   NEA   +  
Sbjct: 532 GEEALRAEIYATHGEALYTEFAKCKPAIEAWLKGEDENEDDDSDDSDSGDDNEAPAARKA 591

Query: 552 ASKSFIVAFINAFGRKDPRA 571
                    ++A   +  +A
Sbjct: 592 VPVKRRKKLLDASTWQRDKA 611



 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 49/209 (23%), Positives = 76/209 (36%), Gaps = 42/209 (20%)

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
              +L    TW++         +++ +   Q +    + +            K    + S
Sbjct: 596 RRKKLLDASTWQR-----DKALMEVAQRAQQALGRAVFDDHNAFCVGFDAVCKAQDARLS 650

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWIPDTN 586
                A   A   +D  A PV                                E+ PD+ 
Sbjct: 651 APEKKAIYKAVSWRDDAALPVIAKRSKLKAGECFEPGFDGAYLETVGKDRFMVEYEPDSA 710

Query: 587 LTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           L + E VP  E   I  +F REV PH PDA+I             ++GYEI+F R+FY+ 
Sbjct: 711 LRDTEQVPLQEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARYFYKP 762

Query: 645 QPSRKLQDIDAELKGVEAQIATLLEEMAT 673
            P R L DI A++  +E Q   LL ++  
Sbjct: 763 VPLRTLADIRADILALEQQTEGLLHKIVG 791


>gi|111026978|ref|YP_708956.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus jostii RHA1]
 gi|110825517|gb|ABH00798.1| type I restriction-modification system methyltransferase subunit
           [Rhodococcus jostii RHA1]
          Length = 578

 Score =  507 bits (1305), Expect = e-141,   Method: Composition-based stats.
 Identities = 199/482 (41%), Positives = 287/482 (59%), Gaps = 20/482 (4%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L NF+W  A+ L G +K   +G VILPFT+LRRL+C LEPTR  VR     +    +
Sbjct: 1   MSKLGNFVWGIADQLRGVYKPHQYGGVILPFTVLRRLDCILEPTRDEVRALATKYADGAL 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           D++   +  G +FYNTS +    L       R NL  YI  FS N   +FE F F + +A
Sbjct: 61  DVQ-VKRKTGLAFYNTSPFDFKHLLEDPEGLRANLVDYITGFSANI-DVFERFKFENELA 118

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L++   LY +   F+ ++LHPD V +  M +++EHLI +F    +E A +  TPRD + 
Sbjct: 119 TLDEKNRLYLVTSQFADVDLHPDVVSNAEMGDLFEHLIYKFAEASNEEAGEHYTPRDAIR 178

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   D+A     PG +RT+YDPT GTGG L+ A   + +     ++      +GQ
Sbjct: 179 LMVDLLFAEDNAAL-LEPGTVRTIYDPTAGTGGMLSVAEERLLERNPDARL----RLYGQ 233

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+  +++A+C + M+ +  +         NI+ G TL++D F  + F +C+SNPP+G  W
Sbjct: 234 EINDQSYAICKSDMIAKGQDV-------GNIKLGDTLAEDQFFDRTFDFCMSNPPYGVDW 286

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +  ++AV+KE    +  RF  GLP + DG MLFL HLA+K+    +GGGRA IVL+ SPL
Sbjct: 287 KASQEAVKKEA-LAQNSRFSHGLPAVGDGQMLFLSHLASKMRPKHDGGGRAGIVLNGSPL 345

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           FNG A SG S+IR+WLL++DL+EAI+ALPT++FF T IATY+WIL N K  ER GKVQLI
Sbjct: 346 FNGAAESGPSKIRQWLLKSDLVEAIIALPTNMFFNTGIATYIWILDNTKRPEREGKVQLI 405

Query: 426 NATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRTFGYRRIKVLR 482
           +AT  W+ +R   G K R ++   R +IL +Y + +     +S++     FGY  I V +
Sbjct: 406 DATPFWSKMRKSLGAKSRELDAGARDRILALYDAYDEADPAYSKIFTSDDFGYWTITVEQ 465

Query: 483 PL 484
           PL
Sbjct: 466 PL 467



 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 59/116 (50%), Gaps = 20/116 (17%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLES------------IQDYFVREVSPHVPDAY 615
           D    PVTD +G   PDT   + EN+P+               I+ YF  EV PHV DA+
Sbjct: 469 DEDGMPVTDRSGNPKPDTKKRDTENIPFTYGGNTEGEAGRTATIKAYFEAEVLPHVHDAW 528

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           ID         +  R+GYEI F R FY+Y P R + +IDA+L+   A+I  LL  +
Sbjct: 529 IDA--------KKTRIGYEIPFTRHFYKYVPPRPIAEIDADLEKQVAKIMELLRVV 576


>gi|282865355|ref|ZP_06274407.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282559828|gb|EFB65378.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 581

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 215/483 (44%), Positives = 297/483 (61%), Gaps = 19/483 (3%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            ++L +FIW  A+ L G ++   +G V+LPFT+LRRL+C LEP ++ VRE    F   N 
Sbjct: 1   MSALGSFIWSIADQLRGPYRPNQYGTVVLPFTILRRLDCILEPDQATVRELAAKFENPNR 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 K  G +FYNTS YS + L   +    +NL  YI  FS +   +FE FDF   I 
Sbjct: 61  LKVEVKKATGRTFYNTSNYSFANLLADADGLADNLADYIDRFSADV-DVFEYFDFKKEIL 119

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKAGLL +I K+F  I+LHPD V +  M + +E++IR+F    +E + D  TPRD + 
Sbjct: 120 ALEKAGLLREIVKSFGKIDLHPDVVSNSDMGDAFEYIIRKFNEAANETSGDHYTPRDAIR 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL    D    E  G+IR+LYDPT GTGG L+ A  H+       K+      +GQ
Sbjct: 180 LLVDLLFAEKDVDLTEG-GIIRSLYDPTAGTGGMLSLAEEHLLAENPGAKLG----LYGQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P+++A+C + +L +  +       + NI  G+TL+ D F G++F YC+SNPP+G  W
Sbjct: 235 EYNPQSYAICKSDLLAKGHD-------ATNIAFGNTLTDDAFKGRQFDYCMSNPPYGVDW 287

Query: 306 EKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           ++   AV++E  + G  GRF PGLP  SDG MLFL+HL +K+  P +GGGR  IV++ SP
Sbjct: 288 KQHAKAVKEERDSAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRVGIVMNGSP 347

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF+G A SG S IRRWLLE+DL+EAIVALPT++FF T IATY+WIL N K  +R+GKVQL
Sbjct: 348 LFSGAAESGPSNIRRWLLESDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDRQGKVQL 407

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVL 481
           I+ T  WT +R N G K R I+D  R +++ +Y   E  + + S++L    FGY  + V 
Sbjct: 408 IDGTSFWTKMRKNLGAKGREISDADRAEVVRLYADYEDADPELSKVLRNDEFGYWMVTVE 467

Query: 482 RPL 484
           RPL
Sbjct: 468 RPL 470



 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 58/115 (50%), Gaps = 20/115 (17%)

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVPDAYI 616
              +PV    G+  PD+   + ENVP+             E IQ YF  EV PHVPDA+I
Sbjct: 473 EGGNPVVSRKGDPKPDSKKRDTENVPFTYGGSTAGAAAEREVIQAYFDAEVKPHVPDAWI 532

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           D            + GYE+ F R FY+Y P R L +IDA+L+   A+I  LL E+
Sbjct: 533 DWAK--------TKTGYEVPFTRHFYKYVPPRPLAEIDADLEKQVAKILDLLREV 579


>gi|53802448|ref|YP_112812.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
 gi|53756209|gb|AAU90500.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
          Length = 790

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 190/611 (31%), Positives = 294/611 (48%), Gaps = 52/611 (8%)

Query: 3   EFTGSAASLANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +       +++FIW  A+  L   +    +  VILPFT+LRRL+  LE T+  V E+   
Sbjct: 7   QDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEETKQKVLERKRF 66

Query: 62  FGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIASFSDNAKAIF 115
              +N+  +  +    AG +FYN SE++L+ L +       R +  +Y+  FS N + I 
Sbjct: 67  LDKNNVAEQDGALRMAAGQAFYNVSEFTLAKLKASSQGQRLREDFIAYLDGFSPNVQEIL 126

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEH 161
             F F   I  L  A +L  + ++F   E++                 + +  M  ++E 
Sbjct: 127 TKFKFRDQIQTLVDAHVLGYLIEDFLDPEINLSPLPVKDADGRIKLPALDNHGMGTVFEE 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  E +E A +  TPRDVV L   L+  P     +        LYD  CGTGG LT
Sbjct: 187 LIRRFNEENNEEAGEHFTPRDVVRLMAKLMFMPVADQIQSG---TYLLYDGACGTGGMLT 243

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-- 279
            A   + +          +   GQE+ PET+A+C A +L++        D +++I  G  
Sbjct: 244 VAEETLRELAEEQGKEVSIHLFGQEINPETYAICKADLLLKG-----EGDEAEHIVGGAD 298

Query: 280 -STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LP 329
            STLS D F  + F + +SNPP+GK W+ D D +  + K     RF            + 
Sbjct: 299 KSTLSNDQFRSREFDFMISNPPYGKSWKTDLDRMGGK-KGFNDPRFIVSHSGDPEFKLIT 357

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + SDG ++FL++   K++     G R AIV + S LF G AG GES IRRW+LEND  EA
Sbjct: 358 RSSDGQLMFLVNKLQKMKQHSPLGSRIAIVHNGSALFTGDAGQGESNIRRWILENDWCEA 417

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQ 448
           I+ALP ++F+ T IATY+W+L+NRK + R+G+VQLI+AT  +  + RN GKK   +++  
Sbjct: 418 IIALPLNIFYNTGIATYIWVLTNRKAKHRKGRVQLIDATRWFQPLRRNLGKKNCELSEAD 477

Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            ++ILD+Y+ + +N    +  D   FGY +I V RPLR+   L +  +  L        L
Sbjct: 478 IQRILDLYLGQPQNTPECKWFDNADFGYWKITVERPLRLKSQLTRRAIETLRFASGDEAL 537

Query: 508 SPLHQSFWLD-------ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                + + D        LKP ++        E   +     +E    K    +      
Sbjct: 538 RAEIWAKYGDKLYAEFSKLKPEIEAWLKGDTGEDDDEPEGDEDEGAPAKKAVPEKRRKKL 597

Query: 561 INAFGR-KDPR 570
           ++     +D  
Sbjct: 598 LDVSTWQRDKT 608



 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           + +    +L    TW++   L +   L       Q++    + +     +          
Sbjct: 589 VPEKRRKKLLDVSTWQRDKTLIELALLA-----QQELGDGVFDDHNDFRARFEAAMAKHG 643

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVN---------------------------GEWI 582
            K + +   A   A   +D  A PV                                E+ 
Sbjct: 644 KKLAAAEKKAIFKAVSWRDETAPPVIAKRTKLKKDEPFEPGLDGVYLEVAGKDRFLVEYE 703

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD +L + E VP  E   I  +F REV PH PDA+I +           ++GYEI+F R+
Sbjct: 704 PDADLRDTEQVPLKEPGGIDAFFRREVLPHAPDAWIARDK--------TQIGYEISFARY 755

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L +I A++  +E Q   LL+++  
Sbjct: 756 FYKPAPLRTLDEIRADILRLEQQTEGLLQKIVG 788


>gi|86738912|ref|YP_479312.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86565774|gb|ABD09583.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 583

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 213/483 (44%), Positives = 290/483 (60%), Gaps = 19/483 (3%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            ++L +FIW  A+ L G ++   +G VILP T+LRRL+C LEP R  VRE    F   N 
Sbjct: 1   MSTLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDCILEPDRETVRELARTFDNPNR 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 K  G  FYNTS Y  S L   +    +NL  Y+  FS +   +FE FDF   I 
Sbjct: 61  LKIEVKKATGRPFYNTSNYGFSNLLADADGLADNLADYLDRFSADV-DVFEYFDFKKEIL 119

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKAGLL +I  +F  I+LHP  V +  M + +E++IR+F    +E + D  TPRD + 
Sbjct: 120 ALEKAGLLREIITSFKAIDLHPKVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIR 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL    +A   E+ G++RTLYDPT GTGG L  A  H+        +      +GQ
Sbjct: 180 LLVDLLFAEKEADLSEA-GIVRTLYDPTAGTGGMLALAEEHLLAQNPDANL----SLYGQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P+++A+C + +L +  +       + NI  G+TL+ D F G++F +C+SNPP+G  W
Sbjct: 235 EYNPQSYAICKSDLLAKGHD-------ATNIAFGNTLTDDAFKGRKFDFCMSNPPYGVDW 287

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           ++    V +E  + G  GRF PGLP  SDG MLFL+HLA+K+  P +GGGR  I+++ SP
Sbjct: 288 KQYAKKVTEERDEAGPYGRFAPGLPATSDGQMLFLLHLAHKMRAPKDGGGRVGIIMNGSP 347

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG AGSG SEIRRWLLENDL+EAIVALPT++FF T IATY+WIL N K  + RG VQ+
Sbjct: 348 LFNGAAGSGPSEIRRWLLENDLVEAIVALPTNMFFNTGIATYIWILDNTKHPDARGLVQI 407

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYRRIKVL 481
           I+ T  WT +R N G K R I+D  R +++ +YV     +  +S++L    FGY  I V 
Sbjct: 408 IDGTSFWTKMRKNLGSKGREISDTDREKVVSLYVDFLDADPDYSKVLSNDEFGYWTITVE 467

Query: 482 RPL 484
           RPL
Sbjct: 468 RPL 470



 Score =  157 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 20/118 (16%)

Query: 569 PRADPVTDVNGEWIPDTNLTEYENVPYLES------------IQDYFVREVSPHVPDAYI 616
               PV D  G+  PD    + ENVP+               I  YF  EV PHVPDA+I
Sbjct: 473 EDGKPVVDRKGQRKPDPKKRDTENVPFTYGGSTAGRAGKLDVINAYFDAEVKPHVPDAWI 532

Query: 617 DKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           D   +        + GYEI F R FY+Y P R L +IDA+L    A+I  LL E+  +
Sbjct: 533 DWAKV--------KTGYEIPFTRHFYRYVPPRPLAEIDADLDKQIAKILDLLREVEGD 582


>gi|330469018|ref|YP_004406761.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
 gi|328811989|gb|AEB46161.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
          Length = 581

 Score =  500 bits (1287), Expect = e-139,   Method: Composition-based stats.
 Identities = 203/483 (42%), Positives = 287/483 (59%), Gaps = 19/483 (3%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            ++L +FIW  A+ L G ++   +G VILP T+LRRL+  LEP R  VR     +   N 
Sbjct: 1   MSTLGSFIWSIADQLRGPYRPNQYGNVILPLTILRRLDYILEPDRELVRALAAKYDNPNR 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                 K  G  FYNTS YS + L   +    +NL  YI  FS +   +F+ FDF   I 
Sbjct: 61  LKIEVKKATGRPFYNTSNYSFANLLADADGLADNLADYIDRFSPDV-DVFQYFDFKKEIL 119

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            LEKA LL ++  +F  + LHPD V +  M + +E++IR+F    +E + D  TPRD + 
Sbjct: 120 ALEKAELLREVITSFKAVNLHPDVVSNADMGDAFEYIIRKFNEAANETSGDHYTPRDAIR 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL    DA   E+  ++R+LYDPT GTGG L  A  H+       K+      +GQ
Sbjct: 180 LLVDLLFAERDAELTEA-DIVRSLYDPTAGTGGMLALAEEHLLAQNPGAKL----RLYGQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P+++A+C + +L +  +       + NI  G+TL+   F  ++F +C+SNPP+G  W
Sbjct: 235 EYNPQSYAICKSDLLAKGHD-------TTNIAFGNTLTDPAFKDRKFDFCMSNPPYGVDW 287

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           ++   AV KE  + G  GRF PGLP  SDG MLFL+HL +K+  P +GGGRA IV++ SP
Sbjct: 288 KQYAKAVTKERDEAGPYGRFAPGLPATSDGQMLFLLHLVHKMRAPEDGGGRAGIVMNGSP 347

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LFNG A SG S IR+WLLE+DL++AIVALPT++FF T IATY+WIL N K  +R+G VQL
Sbjct: 348 LFNGAAESGPSNIRKWLLEHDLVDAIVALPTNMFFNTGIATYIWILDNTKHPDRKGLVQL 407

Query: 425 INATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENG--KFSRMLDYRTFGYRRIKVL 481
           I+ T  WT +R N G K R ++++ R +++ +Y    +G   +S++L    FGY  I V 
Sbjct: 408 IDGTSFWTKMRKNLGAKNRELSEENRAKVVQLYADFTDGDPDYSKVLRNDEFGYWTITVE 467

Query: 482 RPL 484
           RPL
Sbjct: 468 RPL 470



 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 30/179 (16%)

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           + L   ++    +    ++Q    +   +    + ++++E     +   +  +       
Sbjct: 419 KNLGAKNRELSEENRAKVVQLYADFTDGDPDYSKVLRNDEFGYWTITVERPLL------- 471

Query: 565 GRKDPRADPVTDVNGEWIPDTNLTEYENVPYL------------ESIQDYFVREVSPHVP 612
              D   +PV D  G+  PDT   + ENVP+             E IQ YF  EV PHVP
Sbjct: 472 ---DESGNPVVDRKGKPKPDTKKRDTENVPFTYGGSTAGAAGKIEVIQAYFDVEVKPHVP 528

Query: 613 DAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           DA+ID   +        + GYEI F R FY+Y P R L +IDA+L+   A+I  LL E+
Sbjct: 529 DAWIDWTKV--------KTGYEIPFTRHFYKYVPPRPLAEIDADLEKQVAKILDLLREV 579


>gi|257064599|ref|YP_003144271.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792252|gb|ACV22922.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 586

 Score =  497 bits (1281), Expect = e-138,   Method: Composition-based stats.
 Identities = 200/557 (35%), Positives = 294/557 (52%), Gaps = 31/557 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + +++FIW  A+ L   FK  ++G +ILPFT++RRL+  LEPT+ AV E         
Sbjct: 2   NHSEISSFIWGTADLLRSSFKQHEYGDIILPFTVMRRLDVVLEPTKQAVLEAAAKKMPDA 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           +      K AG  FYNTSE+++  L   +   R NL  Y+ SFS     IF+ F     I
Sbjct: 62  LRDTMLKKAAGVDFYNTSEFTMRGLLSDADGIRENLTKYVTSFSPEIADIFDKFKIFDVI 121

Query: 125 ARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             L+   LL+ + + F    I+L P ++ +  M +IYE LIRRF    +E A +  +PRD
Sbjct: 122 KDLDDNDLLFLVVERFCNPRIDLSPASISNADMGDIYEELIRRFSEVSNETAGEHFSPRD 181

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
            + LA  LL+  +       P  I  + DP  GTGG LT   + VA+          +V 
Sbjct: 182 GLRLAAELLVVGEMDDLT-QPNRIVKVCDPCAGTGGALTVFADRVAEINPQA----TVVT 236

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           + QE+  +++A+C +  +++            N+  G TL+ D   G+ F Y +SNPP+G
Sbjct: 237 YAQEINGQSYAICKSDTILKGGNI-------ANVHLGDTLADDQMPGETFGYQISNPPYG 289

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             W+K + AV KEH+  G  GRFG GLP+ISDG +LF+ H+  K+     GGGR A+ L+
Sbjct: 290 VDWKKSQAAVRKEHEQLGFAGRFGAGLPRISDGQLLFVQHMVAKMRPVDEGGGRIAVFLN 349

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF G AGSGESE+RR+LL++DL+EAIVA+P D FF T IATY+W+L N K   R+GK
Sbjct: 350 GSPLFTGAAGSGESEVRRYLLQHDLVEAIVAMPNDFFFNTGIATYIWVLDNTKEPRRKGK 409

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRI 478
           VQLINA  ++T +R   G KR    D+Q  QI+ +Y   E  + K S++     FGY  +
Sbjct: 410 VQLINANGIYTKMRKSLGSKRNEFTDEQIAQIVGLYNDFEDADPKLSKVFANEEFGYVTV 469

Query: 479 KVLRPLRMSFILDKTGLARLEADI----TWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            V RP R            +          ++L+          +   M +     +A  
Sbjct: 470 DVRRPQR------DERGEIVRDKKGRPVADKELNDTENIPLTQDVDEYMAR-EVLPYAPD 522

Query: 535 FVKESIKSNEAKTLKVK 551
              E  K  + + L++K
Sbjct: 523 AWIEPRKQKKGQLLELK 539



 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 32/258 (12%)

Query: 424 LINATDLWTSIRNEGK---KRRIINDDQRRQILDIYVSRENGK----FSRMLDYRTFGYR 476
            +N + L+T     G+   +R ++  D    I+ +            +  +LD      R
Sbjct: 347 FLNGSPLFTGAAGSGESEVRRYLLQHDLVEAIVAMPNDFFFNTGIATYIWVLDNTKEPRR 406

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           + KV   +  + I  K            + L      F  + +  ++     +  A+  +
Sbjct: 407 KGKVQL-INANGIYTKMR----------KSLGSKRNEFTDEQIAQIVGLYNDFEDADPKL 455

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL 596
            +   + E   + V   +            +D R + V D  G  + D  L + EN+P  
Sbjct: 456 SKVFANEEFGYVTVDVRRPQ----------RDERGEIVRDKKGRPVADKELNDTENIPLT 505

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKD----KEIGRVGYEINFNRFFYQYQPSRKLQD 652
           + + +Y  REV P+ PDA+I+     +      K+ G VG+EI F R FY+Y P R   +
Sbjct: 506 QDVDEYMAREVLPYAPDAWIEPRKQKKGQLLELKDGGTVGFEIPFTRHFYEYTPLRPSSE 565

Query: 653 IDAELKGVEAQIATLLEE 670
           I AE++ +EA IA  L +
Sbjct: 566 IFAEIRELEASIAEKLRK 583


>gi|309780965|ref|ZP_07675704.1| type I restriction-modification system, M subunit [Ralstonia sp.
           5_7_47FAA]
 gi|330824639|ref|YP_004387942.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
 gi|308920268|gb|EFP65926.1| type I restriction-modification system, M subunit [Ralstonia sp.
           5_7_47FAA]
 gi|329310011|gb|AEB84426.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
          Length = 794

 Score =  496 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 191/606 (31%), Positives = 293/606 (48%), Gaps = 56/606 (9%)

Query: 11  LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--GSNI 67
           +++FIW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV E+           
Sbjct: 15  ISDFIWNIADDRLRDVYVRGKYRDVILPFTVLRRLDAVLEATKDAVLERKKFLDTHKVAE 74

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSST 123
              +    AG +FYN SE++L+ L ++      R++  +Y+  FS N + I   F+F + 
Sbjct: 75  QDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEILTKFNFRNQ 134

Query: 124 IARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEHLIRRFGSE 169
           I +L  + +L  +  +F   E++                 + +  M  ++E LIRRF  +
Sbjct: 135 IQKLVDSHVLGYLIDDFLDPEVNLAPLPVKDADGRIKLPALDNHGMGTVFEELIRRFNED 194

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E A +  TPRDVV L   LL  P       S     +LYD +CGTGG LT A   + +
Sbjct: 195 NNEEAGEHFTPRDVVQLMAKLLFLPVADRIDSS---TYSLYDGSCGTGGMLTVAEEALHE 251

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDL 286
               H     +   GQE+  ET+A+C A +L++          ++NI  G   STLS D 
Sbjct: 252 LAEEHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENIVGGADKSTLSADQ 306

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPKISDGSML 337
           F  + F + +SNPP+GK W+ D + +  + K     RF            L + SDG ++
Sbjct: 307 FRSREFDFMISNPPYGKSWKTDLERMGGK-KEFNDPRFIVSHAGNAEFKLLTRSSDGQLM 365

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F ++   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++
Sbjct: 366 FQVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNI 425

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIY 456
           F+ T IATY+W+L+N+K E RRGKVQLI+A+  +  + RN GKK   + D    +ILD+Y
Sbjct: 426 FYNTGIATYIWVLANKKAEARRGKVQLIDASGWFQPLRRNLGKKNCELADADIARILDLY 485

Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
               +    S+  D + FGY +I V RPLR+   L    +  L        L     +  
Sbjct: 486 LGEAQETAQSKWFDTQDFGYWKITVERPLRLKSQLSDERIEPLRFATGDEALRAEIYATH 545

Query: 516 LDIL-----------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
            D L           +  ++        +S   +S   +EA   +           ++A 
Sbjct: 546 GDALYTEFAKRKPAIEAWLKGEDENEDDDSEDSDSGDDSEAPAARKAVPAKRRKKLLDAT 605

Query: 565 GR-KDP 569
              +D 
Sbjct: 606 TWQRDK 611



 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/213 (22%), Positives = 77/213 (36%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           +      +L    TW++         +++ +   Q +    + +     +      K   
Sbjct: 593 VPAKRRKKLLDATTWQR-----DKGLMEVAQRAQQALGSAVFDDHNEFRTRFDAALKARG 647

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNG---------------------------EWI 582
            K       A   A   +D  A PV                                E+ 
Sbjct: 648 EKLGAPEKKAIYKAVSWRDEAAPPVIAKRSKLKAGEHFEPGFDGAYLETVGKDRFMVEYE 707

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD+ L + E VP  E   I  +F REV PH PDA+I             ++GYEI+F R+
Sbjct: 708 PDSELRDTEQVPLKEPGGIDAFFAREVLPHAPDAWIATDK--------TQIGYEISFARY 759

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L +I A++  +E Q   LL ++  
Sbjct: 760 FYKPAPLRTLAEIRADILALEQQSEGLLHKIVG 792


>gi|171915568|ref|ZP_02931038.1| type I restriction-modification system methyltransferase subunit
           [Verrucomicrobium spinosum DSM 4136]
          Length = 591

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 197/581 (33%), Positives = 302/581 (51%), Gaps = 31/581 (5%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID- 68
            LAN +W+ A+ L G +    + +V+LP T+LRR +C L  T++ V  ++       +  
Sbjct: 10  DLANLVWQIADLLRGPYTPPQYERVMLPMTVLRRFDCVLARTKAKVLAEHSRRKDGKVQG 69

Query: 69  ---LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               +   K AG  F+N S      L   S N   +L SYI  FS N + IF+ F+F   
Sbjct: 70  DGLDQLLNKAAGQRFHNRSPLDFDKLKGDSDNIEKHLVSYIKGFSANVRTIFDYFEFEKE 129

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I ++ ++ LLY I   FS ++L P  V    M  I+E+LIRRF  + +E A D  TPR+V
Sbjct: 130 IEKMRESNLLYLIVSKFSEVDLDPVRVRSEEMGLIFENLIRRFYEQANETAGDHFTPREV 189

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L   LL   DD L    PG +R L DP CGTGG L +A N++ +  +  ++      +
Sbjct: 190 IRLMAGLLFINDDDLLST-PGAVRKLLDPACGTGGMLAEAQNYMREHHAAAQLYT----Y 244

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQ+      A   + MLI+ +  +   D   N++ G   + D F  + F Y ++NPPFG 
Sbjct: 245 GQDYNKRAFATAASEMLIKEVAHNGSGD---NVRFGDIFTDDRFKDETFDYVIANPPFGV 301

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL----PPNGGGRAAIV 359
            W+K +  V +EH +G+ GRF  GLP+++DGS+LF+ H+ +K E         G R A+V
Sbjct: 302 DWKKQQREVVREHDSGK-GRFNAGLPRVNDGSLLFVQHMISKFEPVLPHLEKHGSRMAVV 360

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           LS SPLF G AGSGESEIR+W++E+D +EAI+ALP  +F+ T I TY+W+L+NRK + R+
Sbjct: 361 LSGSPLFTGGAGSGESEIRKWIIESDWLEAIIALPEQMFYNTGIGTYIWLLTNRKEKRRK 420

Query: 420 GKVQLINATDLW------TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           GK++L++A   W       + R+ G KRR I+  Q  QIL +Y  R++G+ S+  D   F
Sbjct: 421 GKIRLVDARSFWKPGGSEENRRSLGDKRRHISAAQIEQILKLYDHRQDGEHSKTFDNADF 480

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI----YPY 529
           GY R+ V RPL+    + +    +        KL         + +    ++      P 
Sbjct: 481 GYTRVTVERPLQDEAGVIQK--DKHGKPKPDAKLRDFENIPLKEDINAYFKREVLPHVPD 538

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            W +    +            K +    +A I+A      +
Sbjct: 539 AWMDRSKDKVGYEINFNRHFYKFTPPRDLAEIDAEIEIAEK 579



 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 8/105 (7%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D       D +G+  PD  L ++EN+P  E I  YF REV PHVPDA++D+         
Sbjct: 493 DEAGVIQKDKHGKPKPDAKLRDFENIPLKEDINAYFKREVLPHVPDAWMDRSKD------ 546

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
             +VGYEINFNR FY++ P R L +IDAE++  E +   L +E+ 
Sbjct: 547 --KVGYEINFNRHFYKFTPPRDLAEIDAEIEIAEKEFMRLFKEVT 589


>gi|145642019|ref|ZP_01797591.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|145273290|gb|EDK13164.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae 22.4-21]
          Length = 658

 Score =  495 bits (1275), Expect = e-138,   Method: Composition-based stats.
 Identities = 188/675 (27%), Positives = 290/675 (42%), Gaps = 147/675 (21%)

Query: 127 LEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLIRRFGSEVSEG 173
           +    +L  + + F    I L P               +  M  ++E LIR+F  E +E 
Sbjct: 1   MSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPVLTNLGMGYVFEELIRKFNEENNEE 60

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232
           A +  TPR+V+ L T L+ DP     K     I T+YDP CG+GG LT++ N +      
Sbjct: 61  AGEHFTPREVIELMTHLVFDP----LKSQIPAIITIYDPACGSGGMLTESQNFIEQKYPL 116

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +    +   G+E   ET+A+C + M+I+        D  +NI+ GSTL+ D F G  
Sbjct: 117 SESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGSTLATDSFQGNH 169

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPKISDGSMLF 338
           F + LSNPP+GK W KD+  ++  ++     RF                 P+ SDG +LF
Sbjct: 170 FDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDATPRSSDGQLLF 228

Query: 339 LMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL+EAIV LP +
Sbjct: 229 LMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDLLEAIVQLPNN 288

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDI 455
           LF+ T I TY+W+LSN K+E R+GKVQLI+A+ L+  +R N G K      +   +I   
Sbjct: 289 LFYNTGITTYIWLLSNNKSEARKGKVQLIDASLLFRKLRKNLGDKNCEFAPEHIAEITQN 348

Query: 456 YVSR------------ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           Y+              E G  S++ D + FGY ++ + RP R S       +  L  D  
Sbjct: 349 YLDFTAKAREIDSQNEEVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAENIEPLRFDKA 408

Query: 504 W------------------------------------------RKLSPLHQSFWLDILK- 520
                                                       K   L    W      
Sbjct: 409 LFEPMQYLYRQYGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAAL 468

Query: 521 -----PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                 +++      + +    +       K  K+  S +   A  NA    +  A  V 
Sbjct: 469 FQTASKLLKHFGEQQFHDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVSWYNENAAKVI 528

Query: 576 ---------------------------------DVNGE---WIPDTNLTEYENVPYLESI 599
                                               GE   +   ++L + E++P  ++I
Sbjct: 529 AKTLKLKPNELDALCQRYQCQADGLADFGYYATGKAGEYIQYETSSDLRDSESIPLKQNI 588

Query: 600 QDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
            DYF  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R L ++  ++  
Sbjct: 589 HDYFKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRSLAEVAQDILA 640

Query: 660 VEAQIATLLEEMATE 674
           +E Q   L+ E+  E
Sbjct: 641 LEKQADGLISEILGE 655


>gi|38505784|ref|NP_942403.1| type I restriction-modification system M subunit [Synechocystis sp.
           PCC 6803]
 gi|38423808|dbj|BAD02017.1| type I restriction-modification system M subunit [Synechocystis sp.
           PCC 6803]
          Length = 499

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 172/538 (31%), Positives = 275/538 (51%), Gaps = 63/538 (11%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             + +  M  I+E LIRRF  E ++ A +  TPRDVV L   L+      L +       
Sbjct: 11  SALDNHSMGTIFEELIRRFNEENNDEAGEHFTPRDVVKLMADLIFLSIGDLIESG---TY 67

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YD  CGTGG LT A   +A+   +      +   GQE++PET+A+  A +L++     
Sbjct: 68  LVYDGACGTGGMLTVAEERLAELAQNQGKEVSIHLFGQEVQPETYAISKADLLLKG---- 123

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-- 325
                ++N++ GSTLS D F  + F + LSNPP+GK W+ D + +  +    +  RF   
Sbjct: 124 -EGAEAENMKYGSTLSSDAFPSQEFDFMLSNPPYGKSWKTDLERLGGKGDI-KDPRFVTR 181

Query: 326 -------PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                    + + SDG ++FL++   K++     G R A V + S LF G AG GES IR
Sbjct: 182 HGDEADYKMITRSSDGQLMFLVNKLAKMKHNTRLGSRIAEVHNGSSLFTGDAGQGESNIR 241

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNE 437
           RW++END +E I+ALP ++F+ T IATY+W+LSNRK EERRGKVQLI+ T+ +  + RN 
Sbjct: 242 RWIIENDWLETIIALPENIFYNTGIATYIWLLSNRKNEERRGKVQLIDGTEWYVPLRRNL 301

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           GKK   ++++Q + I+D+ V+    + S++   + FGY ++ V RPLR+    D   + +
Sbjct: 302 GKKNCELSEEQIQTIVDLVVNPRETEKSKIFPNQAFGYWKVTVDRPLRVEG-ADPQRVYK 360

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
                 ++      +    +   P++++I+  G                           
Sbjct: 361 AAEIKAFKS-----EGRVTEEGVPIIKKIHKKGTRPDP---------------------- 393

Query: 558 VAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES--IQDYFVREVSPHVPDAY 615
              I+     +    P      E+ PD+NL + E +P LE   I+ +F REV P+ PDA+
Sbjct: 394 ---IHGLFEVEIGGKPCV---VEYEPDSNLRDSEQIPLLEDGGIEAFFRREVLPYTPDAW 447

Query: 616 IDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           I+            ++GYE++F R FY+  P R L +I A++  +E +   LLE++  
Sbjct: 448 IEA--------SKTQIGYEVSFTRHFYKPVPMRTLDEIKADIYALEQETEGLLEQIVG 497


>gi|330941785|gb|EGH44534.1| N-6 DNA methylase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 795

 Score =  489 bits (1260), Expect = e-136,   Method: Composition-based stats.
 Identities = 186/615 (30%), Positives = 303/615 (49%), Gaps = 57/615 (9%)

Query: 3   EFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +       +++FIW  A+D L   +    +  V+LPFT+LRRL+  LE T++AV E+   
Sbjct: 7   QDQSQIKWISDFIWSIADDRLRDVYVRGKYRDVVLPFTVLRRLDAVLESTKNAVLERKKL 66

Query: 62  FGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNAKAIF 115
               N+  +  +    A  +FYN SE++L+ L ++      R++  +Y+  FS N + I 
Sbjct: 67  LDAHNVAEQDGALRDAAKQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSPNVQEIL 126

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMSNIYEH 161
             F+F + I +L  + +L  +  +F   E++                 + +  M  ++E 
Sbjct: 127 TKFNFRNQIQKLVDSHVLGYLIDDFLDPEINLAPLPVKDADDRIKLPALDNHGMGTVFEE 186

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  E +E A +  TPRDVV L   LL  P     + S     +LYD +CGTGG LT
Sbjct: 187 LIRRFNEENNEEAGEHFTPRDVVQLMAKLLFLPVAQSIESS---TYSLYDGSCGTGGMLT 243

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-- 279
            A + + +    H     +   GQE+  ET+A+C A +L++          ++NI  G  
Sbjct: 244 VAEDALHELADQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENIVGGAD 298

Query: 280 -STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LP 329
            STLS D F  + F + +SNPP+GK W+ D + +  + K+    RF            + 
Sbjct: 299 KSTLSADQFRSREFDFMISNPPYGKSWKTDLERMGGK-KDFSDPRFIVSHAGEPEFKLIT 357

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           + SDG ++FL++   K++     G R A+V + S LF G AG GES IRRW+LEND +EA
Sbjct: 358 RSSDGQLMFLVNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEA 417

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQ 448
           I++LP ++F+ T I+TY+W+L+N+K+  RRGKVQLI+A+     + RN G+K   +++  
Sbjct: 418 IISLPLNIFYNTGISTYIWVLANKKSAARRGKVQLIDASQWSQPLRRNLGRKNCELSEAD 477

Query: 449 RRQILDIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
              IL++Y    ++   S+ LD + FGY +I V RPLR+   L    +  L        L
Sbjct: 478 IACILELYLGEAQDTAHSKWLDTQDFGYWKISVERPLRLRSQLSDERIEPLRFASGDEVL 537

Query: 508 SPLHQSFWLDIL------------KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS 555
                +   + L              +  +       +S   +S  S+EA  ++      
Sbjct: 538 RAEIYATHGEALYRDFAKRKSAIEAWLKGEDENEDDEDSDGGDSGDSSEAPAVRRAVPAK 597

Query: 556 FIVAFINAFGR-KDP 569
                ++A    +D 
Sbjct: 598 RRKKLLDASTWQRDK 612



 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 42/214 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           +      +L    TW++         +++ +   Q +    + +     +   +  K   
Sbjct: 594 VPAKRRKKLLDASTWQR-----DKVLMEVAQRAQQALGSVVFDDHNEFRTRFDSALKAQG 648

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVN---------------------------GEWI 582
            K       A   A   +D  A PV                                E+ 
Sbjct: 649 DKIGAPEKKAIYKAVSWRDGTAPPVITKRTKLKATDPFVGNNDGRYLLDEQNHREVVEYE 708

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
            DT+L + E VP  E   I  +F REV PH PDA+I +        E  ++GYEI+F R+
Sbjct: 709 SDTDLRDSEQVPLKEQGGIDAFFAREVLPHAPDAWIAR--------EKTQIGYEISFARY 760

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           FY+  P R L +I A++  +E Q   LL ++  +
Sbjct: 761 FYKPTPLRTLAEIRADILALEQQSEGLLHKIVGD 794


>gi|322379477|ref|ZP_08053843.1| Putative type I restriction-modification system HsdM subunit
           [Helicobacter suis HS1]
 gi|322380458|ref|ZP_08054657.1| type I restriction enzyme M protein [Helicobacter suis HS5]
 gi|321147103|gb|EFX41804.1| type I restriction enzyme M protein [Helicobacter suis HS5]
 gi|321148084|gb|EFX42618.1| Putative type I restriction-modification system HsdM subunit
           [Helicobacter suis HS1]
          Length = 636

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 191/686 (27%), Positives = 316/686 (46%), Gaps = 88/686 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               + NFIW  A  L   +K   +  VILP T++RRL+  LEPT+  V  KY       
Sbjct: 20  QFQPIINFIWDIANLLRDHYKRGKYRDVILPMTVIRRLDAILEPTKQKVLAKYKECKEKG 79

Query: 67  -----IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
                I+       +G+ FYN S+++L TL     N ++N ++Y+ SFS   K I + F+
Sbjct: 80  LLEKGIEAPLLCDASGFKFYNHSQFTLKTLLDDPENLKDNFKNYLNSFSATIKDILKKFN 139

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPD--------TVPDRVMSNIYEHLIRRFGSEVS 171
           F + +  LE+AG+L+K+   F   +++           + +  M  ++E LIR+F  E +
Sbjct: 140 FETELDTLEQAGVLFKLVDKFCSNKVNFSIKSTSDKPGLSNLGMGYVFEELIRKFNEENN 199

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           E A +  TPRD++ L   L+  P           +  +YD  CG+GG LT++   + +  
Sbjct: 200 EEAGEHFTPRDIISLMATLIFKPISEQLNS----VYFVYDNACGSGGMLTESKAFIKNLQ 255

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +I      +GQE+ PET+A+C A MLI+           +NI+ GSTLS D F   +
Sbjct: 256 PTAEIN----LYGQEVNPETYAICKADMLIKGENP-------ENIKFGSTLSDDQFKDLK 304

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + L+NPPFGK +  +++      K     RF  GL  + DG M+FL+++ +K++    
Sbjct: 305 FDFMLTNPPFGKSYGNEQE------KCKNDSRFAVGLTGVGDGQMMFLLNMISKMK-DTP 357

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G R A + + S LFN    SG+  IR  ++  D +EAI+ALPTDLF+ T I T++WIL+
Sbjct: 358 LGSRIASIHNGSALFNSD--SGQVAIRSHIITKDYLEAIIALPTDLFYNTQIPTFIWILN 415

Query: 412 NRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           NRK   ++ KVQLI+AT  +  + ++ GKK + ++ +    I +++  +  G  + +LD 
Sbjct: 416 NRKEAHKKQKVQLIDATSYFEPMAKSLGKKSKRLSQEHIDAIFELFSKQIKGPQAVVLDC 475

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
              GY +  V         +       ++ D        + +        P   +     
Sbjct: 476 EDLGYTKFNV---------ISLKSSQEVKDDSELINKEAILKRLEQLEANPPKLEPIFKD 526

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
                   +I   +    + K SK   +                     E          
Sbjct: 527 EKTFLNALNIPIPKKTNPEGKISKDLKILL----------------NKSE---------- 560

Query: 591 ENVPYLESIQDYFVR---EVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPS 647
           E +P  E    YF+    ++ P           I     +  +VGYEI FN+ FY+   +
Sbjct: 561 EKIPLKEDKDTYFLELLEQIRP----------QIGFIKGQSIKVGYEILFNQHFYRPTEA 610

Query: 648 RKLQDIDAELKGVEAQIATLLEEMAT 673
           +  + I  E++ +E +I  LL+E+  
Sbjct: 611 KSARTIQQEIRELEGEIQELLDEILA 636


>gi|239828720|ref|YP_002951343.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239809013|gb|ACS26077.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 592

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/573 (32%), Positives = 286/573 (49%), Gaps = 39/573 (6%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +    AN IW  A+ L G +K   +G+VILP T+++R    L PTR  V E Y   
Sbjct: 9   QTGINIQEKANLIWSIADSLRGLYKPHQYGEVILPMTVIKRFHDTLLPTREKVLETYEKV 68

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        +GY FYN S+++  +L     N   N  +Y+  FS+N + + ++FDF
Sbjct: 69  KHLEVKEGFLQSASGYVFYNVSKFTFDSLLADPDNIEENFLAYLHGFSENVQDVLKNFDF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              + RL     L+ + + F+  + +  PD +    M  I+E LI++F     E A    
Sbjct: 129 EREVRRLADNDKLFYVIQEFNSEKAYLGPDKITSTDMGYIFEELIKKFSESYDEEAGSHF 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T RD+++L T LL++ +  +   + G+ +T+YD T GT   L+     +       ++  
Sbjct: 189 TSRDIIYLMTDLLIEEEKDVL-MNEGIAKTVYDQTMGTSQMLSAMEERLKALDPEAEV-- 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQE+  +T+A+  A  +IR    D       N++ G+TL++D F G  F YC+SN
Sbjct: 246 --TVFGQEINEQTYAIAKADTMIRGGNPD-------NMRLGNTLTEDQFEGYTFDYCISN 296

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG  W+ + + V+ EH+ GE GRFG GLPK +DG +LFL++  +KL+      GR AI
Sbjct: 297 PPFGVDWKSEYEKVKAEHEKGENGRFGVGLPKKNDGQLLFLLNGLSKLKDT----GRMAI 352

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + S LF+G AGSGESEIRR+++END +EAIV LP DLF+ T I TY+WIL+  K + R
Sbjct: 353 IHNGSALFSGDAGSGESEIRRYVIENDWLEAIVQLPADLFYNTGITTYIWILTKNKPKHR 412

Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRMLD 469
            GKVQLI+A++++   R N G KR  I +  R  I+  Y    N ++        S++ D
Sbjct: 413 IGKVQLIDASNMYEKRRKNIGNKRVDITEPCREMIVKAYREFLNKEYRMGERTVESKIFD 472

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              FGY ++ V  P       D+ G   ++                     P+ + I  Y
Sbjct: 473 NEDFGYYKVTVETP-----QYDEDGNIVMKNGKPVPDKDKRDTEEI-----PLKEDIQEY 522

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
              E          +    K+     F   F  
Sbjct: 523 FEREIKPFNPDAWIDENKTKIGYEIPFTRLFYK 555



 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 9/108 (8%)

Query: 567 KDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDK 626
            D   + V   NG+ +PD +  + E +P  E IQ+YF RE+ P  PDA+ID+        
Sbjct: 488 YDEDGNIVM-KNGKPVPDKDKRDTEEIPLKEDIQEYFEREIKPFNPDAWIDENK------ 540

Query: 627 EIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
              ++GYEI F R FY++QP  K +DI   ++ +E +I    E ++ E
Sbjct: 541 --TKIGYEIPFTRLFYKFQPPEKSEDIAVRIRKLEEEIVKSFESLSGE 586


>gi|124485663|ref|YP_001030279.1| hypothetical protein Mlab_0841 [Methanocorpusculum labreanum Z]
 gi|124363204|gb|ABN07012.1| N-6 DNA methylase [Methanocorpusculum labreanum Z]
          Length = 608

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 172/514 (33%), Positives = 273/514 (53%), Gaps = 40/514 (7%)

Query: 1   MTEF-TGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +      + +A+FIW  A+D L   +    +  VILP T++RR++  LEPT+  V  +
Sbjct: 1   MNQIHAAQVSKIASFIWNIADDCLRDVYSRGKYRDVILPMTVIRRIDAVLEPTKEKVIAQ 60

Query: 59  YLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAK 112
                 +NI    ++    +G +FYN+S + L  L         + +  +Y+  +S N +
Sbjct: 61  KKMLDKANIKAQSDALCLASGQAFYNSSPFCLKDLTSRAKPQQLKADFIAYLDGYSPNIQ 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--------------DRVMSNI 158
            I   F F + I  + +AG+L  + + F   E++                   + +M  +
Sbjct: 121 EILNKFKFRNQIDTMIEAGILGAVIEKFVSSEINLSMNDILDKQGGVRMPGLDNHMMGTL 180

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+R+F  E +E A +  TPRDVV L   L+  P     ++       LYD  CGTGG
Sbjct: 181 FEELLRKFNEENNEEAGEHFTPRDVVELMADLVFMPIADKIEDG---TYLLYDDACGTGG 237

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT     + +    +     +   GQE  PET+A+C + ML++      + + +++I  
Sbjct: 238 MLTVGEQRLNELAIKYNKKFSVHLFGQETVPETYAICKSDMLLKG-----KGEQAEHIFY 292

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--------LPK 330
           GSTLS D F G  F + +SNPP+GK W+ D + +  + K+    RF           +P+
Sbjct: 293 GSTLSNDGFAGHEFDFMISNPPYGKSWKTDAEKMGGK-KDISDPRFVVLHKNEELSLIPR 351

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           +SDG MLFL +  +K++     G R A V + S LF G AGSGES  RR+++ENDL+EAI
Sbjct: 352 VSDGQMLFLANNVSKMKSKTKLGSRIAEVHNGSSLFTGDAGSGESNFRRYIIENDLVEAI 411

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQR 449
           +ALP ++F+ T IATY+W+LSN+K+E RRGKVQLI+AT   T +R N GKK   ++ +Q+
Sbjct: 412 IALPENIFYNTGIATYIWVLSNKKSESRRGKVQLIDATSFKTPLRKNLGKKNCEVSFEQK 471

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
            +I+ + +  +  +FS++     F Y  I V RP
Sbjct: 472 NEIVKLLIDFKENEFSKIFRNEEFLYWSITVERP 505


>gi|150399017|ref|YP_001322784.1| N-6 DNA methylase [Methanococcus vannielii SB]
 gi|150011720|gb|ABR54172.1| N-6 DNA methylase [Methanococcus vannielii SB]
          Length = 589

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/499 (37%), Positives = 279/499 (55%), Gaps = 35/499 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + +  AN IW  A+ + G FK  ++GKVILP T+L+RL   L PT+  V E Y  +
Sbjct: 7   KTNVNVSEKANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKEKVLEAYKEY 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           G   ++   F   +GY FYNTS ++  TL     +   N  +++A FS+N + I ++F F
Sbjct: 67  GSLEVNDGFFRDASGYPFYNTSPFTFETLLNDPDHIEENFRTFMAGFSENIQDILKNFKF 126

Query: 121 SSTIARL----EKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              I+ L     +   L+ + + F+     + PD +    M  I+E LIR+F    +E A
Sbjct: 127 EHIISDLVGSTAEDDKLFYVIQEFNKPNSYMGPDAISTADMGYIFEELIRKFSESYNEEA 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               T RD+++L T LL+  +DA            YD   GT   LT     +    S  
Sbjct: 187 GAHFTARDIIYLMTDLLVTEEDAALTRGK---IDCYDMAMGTSQMLTCLTERILQLDSEV 243

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQE  PET A+  A M+IR   +D       N++ G TL+ D F G +F Y
Sbjct: 244 EVN----VFGQEFNPETFAIAKADMIIRGGIAD-------NMRFGDTLTNDQFKGYKFDY 292

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           C+SNPPFG +W+  K+AVEKEHK+G+ GRFG GLPKISDG MLF ++  +KL+      G
Sbjct: 293 CISNPPFGVEWKPQKNAVEKEHKSGDNGRFGVGLPKISDGQMLFTLNGISKLKDT----G 348

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+ + SPLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S  K
Sbjct: 349 RMAIIHNGSPLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNK 408

Query: 415 TEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------S 465
           ++ER+GKVQLI+A++++   R   G KR  +++D R  I+  Y    +  +        S
Sbjct: 409 SDERKGKVQLIDASNMYEKRRKSIGNKRVDLSEDCRAAIVQAYGEFTDKFYDYGDKSVES 468

Query: 466 RMLDYRTFGYRRIKVLRPL 484
           ++ +   FG+ +I +  PL
Sbjct: 469 KVFNNEDFGFYKITIESPL 487


>gi|257440743|ref|ZP_05616498.1| type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257196804|gb|EEU95088.1| type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 586

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 184/495 (37%), Positives = 258/495 (52%), Gaps = 35/495 (7%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + A  A  IW  A+ L G FK  ++G VILP T+++R    L PT  AV + Y      
Sbjct: 11  ANIAEKAAMIWNVADMLRGPFKPHEYGLVILPMTVVKRFHDCLLPTHQAVLDTYEKVKKL 70

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +      K +GY FYNTS ++  TL     N  +N   Y++ FS NA+ +   FDF + 
Sbjct: 71  QVIDGFLQKASGYQFYNTSRFTFETLLADPDNIESNFRDYLSGFSANAQDVLAKFDFDNI 130

Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I R+ ++  LY + K F   + +  PD +       I+E L+RRF     E A    T R
Sbjct: 131 IKRMVESNTLYLVIKEFGSGKGYLGPDKISAVDCGYIFEDLVRRFSESFGEEAGAHFTSR 190

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+++L T LLL   D           T+YD   GT   L+     + +  S  ++     
Sbjct: 191 DIIYLMTDLLLSEADLDTSS-----MTVYDMAMGTSQMLSCMEERIHELNSDIEV----T 241

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE  P T A+  A M+IR  + +       N++ G TLS+D F G  F Y +SNPPF
Sbjct: 242 CFGQEFNPSTFAIAKADMMIRGGDPN-------NMRFGDTLSEDQFPGFTFQYIISNPPF 294

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G  W++++ AVE E   GE+GRF PGLPKISDG  LF+++   KL       G+ AI+ +
Sbjct: 295 GIDWKREQKAVEAEAARGEMGRFAPGLPKISDGQQLFVLNGLAKLANK----GKMAIIQN 350

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            SPLF+G AGSG S IR+++LEND ++ I+ L TD+F  T I+TY+W+LS  K   R GK
Sbjct: 351 GSPLFSGDAGSGPSNIRQYILENDWLDCIIQLSTDMFMNTGISTYIWVLSKDKPAHRAGK 410

Query: 422 VQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF----------SRMLDY 470
           VQLI+A+  +   R   G KR  I D  R  I+  Y    NGK           S++ + 
Sbjct: 411 VQLIDASHCFEPRRKSIGTKRNDITDACRELIVTAYGEFANGKVYGDKNGIYCESKVFES 470

Query: 471 RTFGYRRIKVLRPLR 485
             FGY +I V RP R
Sbjct: 471 VEFGYNKIVVERPQR 485


>gi|228930125|ref|ZP_04093135.1| Type I restriction enzyme, M protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829624|gb|EEM75251.1| Type I restriction enzyme, M protein [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 594

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 208/575 (36%), Positives = 295/575 (51%), Gaps = 41/575 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + T +    AN IW  A+ L G +K  ++GKVILP T+++RL   L PTR AV +     
Sbjct: 9   QTTINVQKQANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLMPTREAVLKASEQC 68

Query: 63  GGSNI--DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
              N         K AGYSFYNTS Y+  TL     N   N  +Y+  FSDN + I  +F
Sbjct: 69  KDMNDTMRNRMLEKAAGYSFYNTSLYTFETLLADPANIETNFRAYLNGFSDNMQDILANF 128

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F   I  + +   L+ + + F+  E +  PD V    M  ++E L+R+F    +E A  
Sbjct: 129 KFDIEITNMAENDALFYVIQEFNKKESYLGPDKVTSTDMGYVFEELVRKFSESYNEEAGA 188

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RDV++L T LLL  D         +++T+YD T GT   L+  +  + D     ++
Sbjct: 189 HFTSRDVIYLMTDLLLAEDRETLTGQ-NVVKTVYDQTMGTSQMLSAMIERIHDFNKGAEV 247

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQEL PET+A+  A  +IR    D       N+  GSTLS D F G  F YC+
Sbjct: 248 AT----FGQELNPETYAIAKADTMIRGGNPD-------NMALGSTLSNDQFEGYTFDYCI 296

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W+KDK +VE+EH+ GE GRFG GLP I DG +LF ++  +KL+      GR 
Sbjct: 297 SNPPFGIDWKKDKKSVEEEHQKGENGRFGVGLPTIKDGQLLFQLNGLSKLKET----GRM 352

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV + S LF+G+AG GES IR++++ ND +EAIV LPTDLF+ T I+TY+WIL+  K+ 
Sbjct: 353 AIVHNGSALFSGKAGGGESAIRQYVIGNDWLEAIVQLPTDLFYNTGISTYVWILTKNKSA 412

Query: 417 ERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRM 467
            R+GKVQLI+A+ ++   R N G KR  IN++ R  I+  Y    N ++        S++
Sbjct: 413 ARQGKVQLIDASKMFEKRRKNIGNKRVDINEECRNMIVQAYGEFANKEYYVDDTVVESKV 472

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            D   FGY ++ V  P R     D+ G   L+ +      S            P+ + + 
Sbjct: 473 FDNLDFGYVKVTVESPQR-----DEEGNIILKKNKPVADTSLRDTEDI-----PLKEDVQ 522

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
            Y   E          + K  K+     F   F  
Sbjct: 523 TYFEREVLTFNPDAWMDRKKDKIGYEIPFTRLFYK 557


>gi|302037815|ref|YP_003798137.1| putative type I restriction-modification system, N-6
           adenine-specific DNA methylase [Candidatus Nitrospira
           defluvii]
 gi|300605879|emb|CBK42212.1| putative Type I restriction-modification system, N-6
           adenine-specific DNA methylase [Candidatus Nitrospira
           defluvii]
          Length = 658

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 201/689 (29%), Positives = 310/689 (44%), Gaps = 65/689 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLAF 62
              +LA+ IWK+AE L G FK  ++  VILP  ++RRLEC L    E   + VR K    
Sbjct: 9   KLDNLADEIWKSAERLRGKFKAYEYQNVILPIIVIRRLECVLIKWREDKTTEVRAKRPKL 68

Query: 63  GGSNI-DLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDF 118
               +  L   +++    F N +  +L  +              YI  FS N   I + F
Sbjct: 69  TEKELAKLVKGLELTTAPFSNKTNLTLRKVYEEEPTLLDQTFRKYINGFSKNVDDIIDHF 128

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           ++ +TI ++ K   L  I   +  + L P  +    M  +YE L+RRF  +  E A +  
Sbjct: 129 NYRNTIGQMVKNNRLAPILNQYKELPLGPAQLSPLEMGYVYEELLRRFSEQSGEEAGEHF 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHH 234
           TPR+++ L   LL  P       +P    ++YDP CGTGG L+ A  H+ D         
Sbjct: 189 TPREIIRLMVELLEIP-------TPERHISIYDPACGTGGMLSVAKEHLLDRAATEQQRA 241

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI-------QQGSTLSKDLF 287
            +   +  HGQEL P  +A+C A +LI+          +  I       + G  L +  F
Sbjct: 242 NVEQFVTVHGQELSPTNYAICQADLLIKNDRQAKVHLGNSLIPHDPRSKEPGDQLPESTF 301

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              RF + LSNPPFG  W   KD  E E +  +  R+  G+P+++DG++LFL  +  K++
Sbjct: 302 ---RFDFMLSNPPFGVTW-GGKDGYETEARKLQGTRYKAGMPRVNDGALLFLQTMLAKMK 357

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
            P  G  R AI+ + SPL NG  GSGESEIRRW+LEND ++ IV LP  LF+ T I TY+
Sbjct: 358 EPEKGASRLAIIFNGSPLSNGDCGSGESEIRRWILENDWLDCIVMLPDQLFYNTGIFTYI 417

Query: 408 WILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVS-RENG--- 462
           W+L N K    + KV LI+A   +    ++ G KR  I D  R  I   Y    ++G   
Sbjct: 418 WLLRNDKPASHKDKVMLIDARQQYEKEPKSFGNKRNRITDAHRLWIESRYHDGWKDGFAD 477

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +  ++     F Y ++ V     + +  D      +  +       P  +SF    +K  
Sbjct: 478 EHVKLFHREDFAYHKVSV-----VFWQSDDQDQPAIVTE-------PYEKSFTAANIKKE 525

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
            +           +KE  K   A         +       A     P    V     EW 
Sbjct: 526 QEFYDSELIFRVRIKEGRKEQIATLSLGPKDNA--TKVFKALMTNGPEILTV-----EWT 578

Query: 583 PDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFY 642
               + + E +P+ E+I+ +  RE         I +  I  +D    ++GYEI  N++FY
Sbjct: 579 HRHYVKDDEYIPHGENIEAFLKRE---------IARPIILWEDSP--QLGYEILPNKYFY 627

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           +Y P    +++ AE   +E +   +L+ +
Sbjct: 628 KYMPPTPAKELLAEFWRLEKEAEKMLKGL 656


>gi|15597931|ref|NP_251425.1| restriction-modification system protein [Pseudomonas aeruginosa
           PAO1]
 gi|9948812|gb|AAG06123.1|AE004701_6 probable restriction-modification system protein [Pseudomonas
           aeruginosa PAO1]
          Length = 792

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 190/618 (30%), Positives = 304/618 (49%), Gaps = 58/618 (9%)

Query: 1   MTEFTGSAASL---ANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   A+FIW  A+D L   +    +  VILPFT+LRR++  LEPT+ AV 
Sbjct: 1   MQKRQQDQSQIKWVADFIWNIADDRLRDVYVRGKYRDVILPFTVLRRIDAVLEPTKQAVL 60

Query: 57  EKYLAFGGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110
           E+      + +     +    AG +FYN SE++L+ L ++      R +  +Y+  FS N
Sbjct: 61  ERKKLLDSAKVANQNGALQAAAGQAFYNVSEFTLAKLKASAAGQRLREDFIAYLDGFSPN 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156
            + +   F+F + I +L  A +L  + ++F   E++                 + +  M 
Sbjct: 121 VQEVLTKFNFRNQIQKLVDAHILGYLIEDFLDPEVNLSPLPVKDADGRTKLPALDNHGMG 180

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  E +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 181 TVFEELIRRFNEENNEEAGEHFTPRDVVQLMAKLLFLPVADRIESS---TYSLYDGSCGT 237

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   + +    H     +   GQE+  ET+A+C A +L++          ++NI
Sbjct: 238 GGMLTVAEEALKELAEQHGKDVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 292

Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--------- 324
             G   STLS D F  + F + +SNPP+GK W+ D + +  + K     RF         
Sbjct: 293 VGGADKSTLSADQFRSREFDFMISNPPYGKSWKTDLERMGGK-KEFSDPRFIVNHGGDAE 351

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              + + SDG ++F ++  +K++     G R A+V + S LF G AG GES IRRW+LEN
Sbjct: 352 FKLITRSSDGQLMFQVNKLSKMKHDTALGSRIALVHNGSALFTGDAGQGESNIRRWVLEN 411

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKKRRI 443
           D +EAI+ALP ++F+ T IATY+W+L+N+K E R+G+VQLI+A+  +  + RN GKK   
Sbjct: 412 DWLEAIIALPLNIFYNTGIATYIWVLANKKAEHRKGRVQLIDASQWFAPLRRNLGKKNCE 471

Query: 444 INDDQRRQILDIYVSREN-----GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           + +   R+ILD+Y+            S+  D + FGY +I V RPLR+   L  + +  L
Sbjct: 472 LAEGDIRRILDLYLGEAQETDSSTDQSKWFDTQDFGYWKITVERPLRLKSQLKTSAIDTL 531

Query: 499 EADITWRKLSPLHQSFWLDIL----KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                  +L     +   D L      +  +I  +    S   +  +  + +    K + 
Sbjct: 532 RFASGDEELRTEIYAEHGDKLYTSFAKLKPEIEAWLKGGSEDDDDAEDGDEEGTHAKKAV 591

Query: 555 SFI--VAFINAFGR-KDP 569
                   ++A    +D 
Sbjct: 592 PEKRRKRLLDATTWQRDK 609



 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 42/213 (19%)

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           + +    RL    TW++         LD+     + +    + +  V  +      K   
Sbjct: 591 VPEKRRKRLLDATTWQR-----DKGLLDLALLAQKVLGDAVFDDHNVFRAEFDIAMKAHD 645

Query: 550 VKASKSFIVAFINAFGRKDPRADPVTDVNGE---------------------------WI 582
            K + +   A   A   +D  A PV     +                           + 
Sbjct: 646 KKLTAADKKAIFKAVSWRDDTAPPVVAKRHKLKASDAFIPSFDGRYFIETGKHREVVWYE 705

Query: 583 PDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
           PD +L + E VP  E   I  +F REV PH PDA+I        D E  ++GYEI+F R+
Sbjct: 706 PDADLRDTEQVPLKELGGIDAFFEREVLPHAPDAWI--------DGEKTQIGYEISFARY 757

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           FY+  P R L DI A++  +E Q   LL ++  
Sbjct: 758 FYKPTPLRPLDDIRADILKLEQQTEGLLHKIVG 790


>gi|134045682|ref|YP_001097168.1| N-6 DNA methylase [Methanococcus maripaludis C5]
 gi|132663307|gb|ABO34953.1| N-6 DNA methylase [Methanococcus maripaludis C5]
          Length = 587

 Score =  473 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 187/500 (37%), Positives = 268/500 (53%), Gaps = 37/500 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +    AN IW  A+ + G FK  ++GKVILP T+L+RL   L PT+ AV +     
Sbjct: 7   QTNINVQEKANMIWNIADIIRGTFKPHEYGKVILPMTVLKRLNDTLLPTKDAVLKTCEEI 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        AGY FYNTS ++  TL     +   N   +IA FSDN + I + F F
Sbjct: 67  KDFEVKEGFLESAAGYPFYNTSPFTFETLLNDPDHIEANFRKFIAGFSDNIQDIIKHFKF 126

Query: 121 SSTIARL----EKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              I+ L     +   L+ + + F+     + PD +    M  I+E LIR+F    +E A
Sbjct: 127 EHIISDLVGSTPEEDKLFYVIQEFNKPSSYMGPDAISTADMGYIFEELIRKFSESYNEEA 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               T RD+++L T LL+  D+       G  +T YD   GT   LT     +    +  
Sbjct: 187 GAHFTARDIIYLMTDLLVTEDEFD-----GSPKTCYDMAMGTSQMLTCLTERIQQLDNKI 241

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQE  PET A+  A M+IR  ++D       N++ G TL  D F G  F Y
Sbjct: 242 EV----SVFGQEFNPETFAIAKADMIIRGGKAD-------NMRFGDTLINDQFKGYTFDY 290

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           C+SNPPFG  W+  K AV+KE+K  E GRFG GLPKISDG MLF ++  +KL+      G
Sbjct: 291 CISNPPFGVDWKAQKKAVDKENKLAEKGRFGVGLPKISDGQMLFTLNGISKLKDT----G 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+ + SPLF G AGSG SEIR++++END ++AIV LP DLF+ T I TY+W++S  K
Sbjct: 347 RLAIIHNGSPLFTGDAGSGPSEIRKYIIENDWLDAIVQLPNDLFYNTGITTYVWLISKNK 406

Query: 415 TEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------S 465
           ++ER GKVQLI+A++++   R   G KR  ++ D R  I+  Y    +  +        S
Sbjct: 407 SDERAGKVQLIDASNMYVKRRKSIGNKRVDLSTDCREAIVKAYGEFSDKYYDYGEKSVES 466

Query: 466 RMLDYRTFGYRRIKVLRPLR 485
           ++ +   FGY +I V  PL+
Sbjct: 467 KVFNNEDFGYYKITVESPLK 486



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 581 WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRF 640
             PDT+  + ENVP  E I++YF REV P+ P+A+ID         +   +GYEI F R 
Sbjct: 499 PAPDTSKRDTENVPLTEDIEEYFKREVLPYNPEAWIDD--------KKTTIGYEIPFTRH 550

Query: 641 FYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
           FY+Y    K   +   +  +EA++   L+ +  +
Sbjct: 551 FYKYVAPEKSDMVAERICVIEAELTGSLKSLFGK 584


>gi|317132744|ref|YP_004092058.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470723|gb|ADU27327.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 689

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 152/481 (31%), Positives = 242/481 (50%), Gaps = 39/481 (8%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               L DP  GTGG L+  + +  +  +      ++  +GQEL  +T+A+C +  +I+  
Sbjct: 2   KDEVLIDPAAGTGGMLSAGIEYATELNNQA----LIEVYGQELNEKTYAICKSDTMIKG- 56

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                    KNI  G++ ++D    + FHY L NPPFG +W+K +  +  E++ G  GRF
Sbjct: 57  ------KGYKNIHLGNSFTEDALPHETFHYMLCNPPFGVEWKKYEKFIRDENERGFAGRF 110

Query: 325 GPGLPKISDGSMLFLMHLANKL-----ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G GLP++SDGS+LFL H+ +K+     +     G R AIV + SPLF G AGSGESEIRR
Sbjct: 111 GAGLPRVSDGSLLFLQHMISKMMEYDEKAEGLTGCRLAIVFNGSPLFTGDAGSGESEIRR 170

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EG 438
           W++EN  +E I+ALP  LF+ T I TY+WI++NRK   R+GK+QLI+ T  +  +R   G
Sbjct: 171 WIIENGWLETIIALPDQLFYNTGILTYVWIVTNRKKGVRKGKIQLIDGTSFFERMRKPLG 230

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           +KR++I+++Q+ ++  IY     G+F ++ D   F Y ++ V RPLR++F      + R+
Sbjct: 231 EKRKLISEEQKDELTRIYGKFVEGEFCKIFDEDDFAYWKVTVERPLRLNFQASAERIKRI 290

Query: 499 EADITWRKLSPLHQ--------------SFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
                +  L+   +                    L  +        +        +    
Sbjct: 291 REQTAFANLATSRKRKPAEHDAEVAEGKKQQEAALAAVATLDGAVLYKNRAEFSKLLHKA 350

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFV 604
            K   +      + A +     KD  AD  TD  G   PDT+L + E +P+ + I  Y  
Sbjct: 351 FKKAGLDVKAPLLKAVLAGLSEKDETADICTDAKGNPEPDTDLRDTEQIPFKDDIAAYVQ 410

Query: 605 REVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQI 664
           REV P+ PDA++        D+   + GYEI F RFF  ++          +++ +  +I
Sbjct: 411 REVLPYAPDAWV--------DESKTKKGYEIPFARFFSSFEELGNADGTLRKIQSLGQKI 462

Query: 665 A 665
            
Sbjct: 463 Q 463


>gi|264677661|ref|YP_003277567.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208173|gb|ACY32271.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 545

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 167/473 (35%), Positives = 261/473 (55%), Gaps = 49/473 (10%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              + +FIW  A+D L   F    +  VILP  +LRRL+C LEP++ AV E+        
Sbjct: 6   HNKIVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEEVRFQREDA 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDF 120
             +++D     + +GY FYNTS ++L +L    +    NL++Y+  FSDN K I E FD 
Sbjct: 66  EMADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLDGFSDNVKEIVEKFDL 125

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLIRRFG 167
            + I ++ ++ +L+ + + F   E++                  +  M  ++E LIR+F 
Sbjct: 126 RNQIRKMAQSDVLHDVIEKFVSDEINLSPNDRKGPDGRTQPGLSNLGMGYVFEELIRKFN 185

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E +E A +  TPR+V+ L T L+  P             T+YDP CG+GG LT++ + +
Sbjct: 186 EENNEEAGEHFTPREVIKLMTNLVFIPVKDQL----PNPLTIYDPACGSGGMLTESQDFI 241

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            D     K    +  +G+E+ PET+A+C + M+I+  +        +NI+ GSTL+ D F
Sbjct: 242 TDPEGEIKAKVGVFLYGKEVNPETYAICKSDMMIKGNDP-------ENIKFGSTLATDDF 294

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--------------PGLPKISD 333
           +G RF + L+NPP+GK W+ D+ ++  E K+    RF               P +P+ SD
Sbjct: 295 SGTRFDFMLTNPPYGKSWKSDQKSIV-EGKDVIDHRFQVNLSDYSEEDFDFYPAIPRSSD 353

Query: 334 GSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           G +LF+M +  K++       G R A V + S LF G AGSGES IRR ++END +EAI+
Sbjct: 354 GQLLFMMEMVGKMKRLGDSPMGSRIASVHNGSALFTGDAGSGESNIRRHIIENDYLEAII 413

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRI 443
            LP +LF+ T I TY+W+LSN K ++R+GKVQLI+A++L+  +R N G+K   
Sbjct: 414 QLPNNLFYNTGITTYVWVLSNNKADQRKGKVQLIDASNLYQKLRKNLGEKNCE 466


>gi|162448115|ref|YP_001621247.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A]
 gi|161986222|gb|ABX81871.1| type I restriction enzyme, M protein [Acholeplasma laidlawii PG-8A]
          Length = 593

 Score =  469 bits (1206), Expect = e-130,   Method: Composition-based stats.
 Identities = 189/575 (32%), Positives = 288/575 (50%), Gaps = 39/575 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T +    AN IW  A  L G FK  ++GKVILP T+L+R + AL+ T+  V        
Sbjct: 10  TTTNIQEKANLIWAIANHLVGLFKPHEYGKVILPMTVLKRFDDALKETKQEVLSLNKKLN 69

Query: 64  G----SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                  I      K  GY FYN S ++   L     N  +N ++Y+  FSDN K I  +
Sbjct: 70  EQKTIDAIKDGLICKTTGYDFYNVSPFTFENLLADPDNIASNFDTYLKGFSDNVKDIISN 129

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           F F   +  + K  +LY + + F+    ++HPD +    M  I+E LIR+F     E A 
Sbjct: 130 FKFEQVLETMHKGNVLYVVIQEFNSKKADMHPDKITSMDMGYIFEELIRKFSESYDEQAG 189

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              T RD+++L   LL+  +    K++ G+++T YD   GT   L      + +     K
Sbjct: 190 AHFTSRDIIYLMAELLVANEKEHIKQN-GVVKTAYDMAMGTSQMLGCLDEKMKEINFDSK 248

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +       GQE  PET+A+  A MLI+          ++N++ G TLS D F+   F Y 
Sbjct: 249 L----SLFGQEFNPETYAIAKADMLIKGGN-------AQNMKFGDTLSDDQFSNYEFDYI 297

Query: 296 LSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +SNPPFG  W+ ++  V++E+ K G  GRFGPGLP ISDG MLFL++   KL+    G G
Sbjct: 298 ISNPPFGIDWKLEEKQVKQEYAKLGYDGRFGPGLPAISDGQMLFLLNGVKKLK---EGSG 354

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+ + S LF G AGSG SEIR++L+E+DL+EAI+ LPTDLF+ T I+TY+WI+S  K
Sbjct: 355 RMAIIQNGSSLFTGDAGSGPSEIRKYLIESDLLEAIIQLPTDLFYNTGISTYVWIVSKNK 414

Query: 415 TEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------S 465
            +ER GK+QLI+A++ +   R N GKKR  ++D     I   Y+  +  K+        S
Sbjct: 415 NKERLGKIQLIDASNCYVKRRKNIGKKRVDLDDTSIDLITKAYLDFKEVKYEENDLVVES 474

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           ++ D   FGY ++ V  P      +       +      +  S    +  + + + +   
Sbjct: 475 KIFDNDFFGYTKVTVESP------ITDENGKPILKKGKLQADSKKRDTELVPLQENIEAF 528

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                   +      +S +    ++  ++ F    
Sbjct: 529 FKDNVLPYNSSAWMDRSKDKVGYEIPFTRLFYKFI 563


>gi|303242150|ref|ZP_07328640.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302590337|gb|EFL60095.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 588

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 187/495 (37%), Positives = 275/495 (55%), Gaps = 29/495 (5%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + T + +  +N IW NA  L G +K  ++GKVILP T+++R    L PTR  V E Y   
Sbjct: 9   QTTINISEKSNMIWNNANHLVGLYKPHEYGKVILPMTVIKRFHDTLLPTRDKVLETYEKV 68

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        +GYSFYNTS+++  +L   + +   N  +Y+  FSDN   I  +F+F
Sbjct: 69  KNFEVKEGFLESASGYSFYNTSKFTFDSLLSDAEHIEENFRTYLNGFSDNVHDILANFEF 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              I +L    +L+ I + F+    +   D +    M  I+E LI+ F    +E A    
Sbjct: 129 DKEITKLANNNILFFIIQEFNKKTSYLGADLITSVDMGYIFEDLIKTFSETYNEEAGAHF 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           T RD+++L T LL+  +     E+ G+++T+YD T GT   L      +    +  +I  
Sbjct: 189 TSRDIIYLMTDLLICDEKDSMLEN-GVVKTVYDQTMGTSQMLGCMEERLHALDADAEI-- 245

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                GQE  PET+A+  A MLIR   +D       N++ G TLS D F+G  F YC+SN
Sbjct: 246 --RLFGQEFNPETYAIAKADMLIRGGNAD-------NMKFGDTLSDDKFSGYTFDYCISN 296

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG  W+++++AV+ E+K G+ GRFG GLPKISDG MLF+++  +KL+      G+ AI
Sbjct: 297 PPFGIDWKREEEAVKAENKLGDKGRFGAGLPKISDGQMLFMLNGVSKLKST----GKMAI 352

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + SPLF+G AGSGESEIRR+L+END I+AI+ L TD F+ T I TY+WI++  K   R
Sbjct: 353 IQNGSPLFSGDAGSGESEIRRYLIENDWIDAIIQLSTDTFYNTGITTYIWIITKNKPAHR 412

Query: 419 RGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKF--------SRMLD 469
            GK+QLI+A+ +    R   G KR  I D+ R  I+  Y    N  +        S+++D
Sbjct: 413 EGKIQLIDASKMAEQRRKSIGNKRYDITDECRDLIVTAYGEFLNKVYTLGDKTCESKVID 472

Query: 470 YRTFGYRRIKVLRPL 484
               GY +I V  PL
Sbjct: 473 NVDLGYHKITVETPL 487


>gi|126664067|ref|ZP_01735061.1| type I restriction-modification [Flavobacteria bacterium BAL38]
 gi|126624016|gb|EAZ94710.1| type I restriction-modification [Flavobacteria bacterium BAL38]
          Length = 578

 Score =  465 bits (1198), Expect = e-129,   Method: Composition-based stats.
 Identities = 188/533 (35%), Positives = 288/533 (54%), Gaps = 28/533 (5%)

Query: 1   MTEFTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M            FIW+  +D L   FK  + G V+LPF ++RRL+C L+     VR+ Y
Sbjct: 1   MNNNNTKVE--VGFIWQITDDVLRDAFKKNEIGDVVLPFVVIRRLDCILDGVNENVRDTY 58

Query: 60  LAFGGS--NIDLESFVKVA--GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKA 113
             F        L+  ++ A  G  FYNTS ++L +L     N   N  +Y+  F+   + 
Sbjct: 59  NNFKDKVAEDKLDPILRKAAGGLKFYNTSRHTLHSLKDDARNIEINFNNYLNGFNQEVRD 118

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I E+F F   +ARL K  LLY++      I++H + + +  M  ++E LIR    + +E 
Sbjct: 119 ILENFQFDKIVARLIKNKLLYEMIDAICKIDMHTEKIDNHGMGYVFEELIRISNEQSNET 178

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-CGS 232
           A +  TPRDV+ L   +L   +       PG+IRT++DP CGTGG +    N++ D    
Sbjct: 179 AGEHFTPRDVIALMNTILFVNEKQEL-AQPGIIRTIFDPACGTGGMVNLGKNYILDTLLK 237

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K  P +  +GQEL  +++A+  +  LI   E++       NI+ G++ S+D F GK F
Sbjct: 238 DSKNKPTIQTYGQELNEQSYAIAKSEALITGEEAN-------NIKHGNSFSEDQFQGKHF 290

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           HY ++NPP+G  W+KD+  +E E  N   GRF  GLP+ SDG +LFL H+ +K+E     
Sbjct: 291 HYMMANPPYGVTWKKDQKFIENESLN-PAGRFYAGLPRTSDGQLLFLQHMLSKIE---RE 346

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G R  +V + SPLF G AGSGES+IR+W++END +E IVALP D+F+ T I TY+W L+N
Sbjct: 347 GSRIGVVTNGSPLFTGDAGSGESDIRKWIIENDWLECIVALPKDMFYNTGINTYIWFLTN 406

Query: 413 RKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           +K ++R+GKVQLINA D   S +   G KR  I  +    IL +Y   +  + S++ D  
Sbjct: 407 KKEKQRKGKVQLINAVDYCRSNKKSLGNKRNEITAEHITDILKLYTDFKPTQHSKIFDNE 466

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            FGY ++ V +P     + D+ G   L+ +   +  S       + +   + +
Sbjct: 467 HFGYFQLTVEQP-----VYDEKGKKVLDKNKNPKADSKKRDKENVPLTADIEK 514



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 8/108 (7%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
             D +   V D N     D+   + ENVP    I+ YF  +V PHVPDA+ID        
Sbjct: 479 VYDEKGKKVLDKNKNPKADSKKRDKENVPLTADIEKYFETQVLPHVPDAWIDFDK----- 533

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
               R+GYEINF ++FY+Y+  R   ++  E+  +E +I + L E+ +
Sbjct: 534 ---TRIGYEINFTKYFYEYKGLRPATEVKTEIVSLETEITSFLNELLS 578


>gi|33240158|ref|NP_875100.1| Type I restriction-modification system methyltransferase subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237685|gb|AAP99752.1| Type I restriction-modification system methyltransferase subunit
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 580

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/487 (40%), Positives = 288/487 (59%), Gaps = 22/487 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L+ FIW  AE L  ++K +D+G+VIL FT+LRR++C LE  +  V EK  +    ++ 
Sbjct: 4   KNLSAFIWSVAELLRDNYKKSDYGQVILAFTVLRRIDCVLEAEKRGVCEKRTSHKAPSLK 63

Query: 69  LESF-VKVAGYSFYNTSEYSLST--LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            ++F +     +  + S   L    L   +   N+ +YI SFS   K IFE F+F + I 
Sbjct: 64  SKAFRLNQPDVNSCSPSLLGLKEIILDEGSISKNINAYIQSFSPTIKGIFESFEFETHID 123

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL K  LL ++ + F+ I+LHP T+ +  M  I+E LIR+F    ++   +  TPR+V++
Sbjct: 124 RLNKTNLLSQVTRKFTLIDLHPTTISNTEMGTIFEELIRKFAELSNDIQGEHFTPREVIN 183

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL   D      +  +++++YDPT GTGG L+ A  H+       K+       GQ
Sbjct: 184 LMVNLLFSKDKEAL-LAEDIVKSIYDPTAGTGGMLSVAEEHIKAINPSAKLIVS----GQ 238

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E+ PE++A+C A MLIR  + +       NI  G+TLS D    K++ Y LSNPPFG  W
Sbjct: 239 EINPESYAICKADMLIRGQDIN-------NICLGNTLSHDHHAKKKYDYMLSNPPFGVDW 291

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K +  V+KE+   G  GRFGPGLP++SDGS+LFLMHL +K+     GG R  IVLS SP
Sbjct: 292 KKVQKEVKKEYRDKGFSGRFGPGLPRVSDGSLLFLMHLISKMLPASKGGSRIGIVLSGSP 351

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           +F G AGSGESEIRR++LEND +EAI+ LP +LF+ T I+TY+WI++N+K   R+GKVQL
Sbjct: 352 MFTGSAGSGESEIRRYVLENDYVEAIIQLPQELFYNTAISTYIWIITNKKESSRKGKVQL 411

Query: 425 INATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYRRI 478
           I+ +     +R   G KR+ + D++  +I  I+ S +  K       R+L     GY+ I
Sbjct: 412 IDCSTFSKKMRKSLGSKRQELRDNEISEITKIFNSFKEVKTEGKSICRILKTEELGYKLI 471

Query: 479 KVLRPLR 485
            V RP +
Sbjct: 472 TVDRPKK 478


>gi|49484939|ref|YP_042160.1| putative type I restriction enzyme methylase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|49243382|emb|CAG41799.1| putative type I restriction enzyme methylase protein
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 595

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 187/575 (32%), Positives = 293/575 (50%), Gaps = 40/575 (6%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + + +    AN IW  A+ L G +K  ++GKVILP T+++RL   L  TR  V +     
Sbjct: 9   QTSINVQKQANLIWNVADILRGLYKPHEYGKVILPMTVIKRLHDTLLKTRDKVLKTAENT 68

Query: 63  GGSNI--DLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF 118
              N           +GYSFYNTS Y+  TL     N  +N  +Y+  FS+N + I  +F
Sbjct: 69  QSINDVMRERLLKNASGYSFYNTSLYTFETLLADPANIESNFRAYLNGFSENMQDILNNF 128

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F   I  +    +L+ + + F+  + +  PD +    M  ++E L+R+F    +E A  
Sbjct: 129 KFDVEITTMADNDVLFYVIQEFNKADAYLGPDKMTSTDMGYVFEELVRKFSESYNEEAGA 188

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             T RD+++L T LLL  D         + +T+YD T GT   L+     + D     ++
Sbjct: 189 HFTSRDIIYLMTDLLLIEDKDTLF-KEHVFKTVYDQTMGTSQMLSAMTERIHDMNDTAEV 247

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  GQEL PET+A+  A  +IR  +        +N+  GSTL+ D F G  F YC+
Sbjct: 248 AT----FGQELNPETYAISKADTMIRGGDP-------ENMALGSTLTSDRFEGFTFDYCI 296

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG  W+KD+ AV+ EH+ GELGRFG GLP++SDG +LF ++  +KL+      GR 
Sbjct: 297 SNPPFGVDWKKDQKAVKAEHELGELGRFGVGLPRVSDGQLLFQLNGISKLKET----GRM 352

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+ + S LF+G  G+GES IR++++END +E I+ LP DLF+ T I+TY+WI++  K+ 
Sbjct: 353 AIIHNGSALFSGNPGAGESLIRQYVIENDWLEGIIQLPNDLFYNTGISTYIWIITKDKSP 412

Query: 417 ERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------SRM 467
           ER+GKVQL++A++++   R N G+KR  I++  R  I+  Y    + ++        S++
Sbjct: 413 ERQGKVQLVDASNMYEKRRKNIGEKRVDISEACREMIVQAYGEFNDKEYYLGDGTVESKI 472

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           L   +FG+ R+ + RP R            +      + +    +        P+ + I 
Sbjct: 473 LKNESFGFTRVTIERPQR------DENGDIVYKKNGSKSVDTNLRDTED---IPLTEDIN 523

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
            Y   E          + K  K+     F   F  
Sbjct: 524 EYFEREILPFNQDAWMDRKKDKIGYEIPFTRLFYK 558


>gi|310658569|ref|YP_003936290.1| n-6 DNA methylase [Clostridium sticklandii DSM 519]
 gi|308825347|emb|CBH21385.1| N-6 DNA methylase [Clostridium sticklandii]
          Length = 597

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 193/569 (33%), Positives = 299/569 (52%), Gaps = 42/569 (7%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +    A+ IW  A+ + G FK  ++GKVILP TLL+RL   L  T+  V +KY   
Sbjct: 7   QTNINVQEKADMIWGIADIIRGTFKPHEYGKVILPMTLLKRLNDTLLETKEGVLKKYEEV 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +      K +GYSFYN S ++   L     +   N +++IA FS+N   I ++F F
Sbjct: 67  KNFEVKDGFLTKASGYSFYNISPFTFENLLNEPEHIEENFKTFIAGFSENIHDIIKNFKF 126

Query: 121 SSTIARL----EKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            +T+  L    ++   L+ + + F+    +   D +    M  I+E L+R+F    +E A
Sbjct: 127 ENTLNDLVGSTKEESKLFYVIQEFNKPNAYMGADIITTTDMGYIFEELVRKFSESYNEEA 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               T RD+++  T LL+  ++ + +E  G+++T+YD   GT   LT     + +  +  
Sbjct: 187 GAHFTARDIIYTMTDLLIAEEENVLQED-GLVKTVYDMAMGTSQMLTSMEERLKELDADA 245

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           ++       GQE+ PET+A+  A M+IR          + N++ G TLS D F    F Y
Sbjct: 246 EV----TVFGQEINPETYAIAKADMIIRGGN-------ASNMRFGDTLSNDRFEDYEFDY 294

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SNPPFG  W+  K AVEKEHK G  GRF PGLPKISDG MLF ++   KL    N  G
Sbjct: 295 IISNPPFGVDWKAQKSAVEKEHKKGSNGRFAPGLPKISDGQMLFTLNGIKKL----NDTG 350

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           + AI+ + SPLF G AGSG SEIRR+++ENDL+EAIV LPTDLF+ T I TY+W++S  K
Sbjct: 351 KMAIIHNGSPLFVGDAGSGPSEIRRYIIENDLLEAIVQLPTDLFYNTGITTYIWLISKNK 410

Query: 415 TEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------S 465
           +  R GKVQLI+A++++   R + G KR  +++  R  I++ Y   EN  +        S
Sbjct: 411 SARRTGKVQLIDASNMYIKRRTSLGNKRVELDECCREAIVNAYGDFENKHYEYDKKSVES 470

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           ++ +   FGY +I V  P      +D+ G    +  +  ++          + +  ++ +
Sbjct: 471 KIFNNEDFGYYKIVVESP-----QVDEYG----KIILKKKQSVADPSKRDTENVPMILGK 521

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASK 554
                  E F KE +  N+   +    +K
Sbjct: 522 DQDEVIKEYFEKEVLPYNQDAWVDENKTK 550


>gi|225026440|ref|ZP_03715632.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353]
 gi|224956232|gb|EEG37441.1| hypothetical protein EUBHAL_00689 [Eubacterium hallii DSM 3353]
          Length = 592

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 195/580 (33%), Positives = 285/580 (49%), Gaps = 46/580 (7%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    ++   A  IW  A+DL G +K  ++G VILP T+++R    L  T  AV + Y  
Sbjct: 8   TNVGKNSNDTAALIWSVADDLVGAYKPHEYGLVILPMTVIKRFHDCLLLTHQAVLDTYKK 67

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFD 119
                +      K +GY FYNTS ++  TL     N  +N ++Y+  FSDN + I    D
Sbjct: 68  VEKLAVKDGFLRKSSGYQFYNTSPFTFKTLIADPENIVDNFKAYLNGFSDNVQDILARMD 127

Query: 120 FSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F S I  +E+AGLLY++  +F     +  P+ +    M  I+E+L+RRF    +E A   
Sbjct: 128 FDSQIKHMEEAGLLYQVISDFCTDKGDFSPEKISAVDMGYIFENLVRRFSESYNEEAGAH 187

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            T RD+++L + LL+  D++ F    G+ +T+YD T GT   LT     +    +   + 
Sbjct: 188 FTSRDIIYLMSDLLVAGDESAFTGD-GISKTVYDMTMGTSQMLTCMEERLKQMDADADV- 245

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQE  P T  +  A MLIR  + +       N+Q G TLS D F+G +F Y +S
Sbjct: 246 ---TVFGQEFNPFTFGIAKADMLIRGGDPN-------NMQFGDTLSDDKFSGYKFDYIIS 295

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG  W++++  V  E K G  GRF PGLP   DG +LF+++   KL+      G+ A
Sbjct: 296 NPPFGIPWKREEKEVTAEFKKGTAGRFAPGLPAKGDGQLLFMLNGLAKLKDD----GQMA 351

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+ + S LFNG AGSG SEIRR+L+END ++AIV LP + F+ T IATY+WI+   K   
Sbjct: 352 IIQNGSSLFNGDAGSGPSEIRRYLIENDWLDAIVQLPNNAFYNTGIATYIWIVMKNKPVT 411

Query: 418 RRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF------------ 464
            +GKVQLI+A+   +S R N G K   I    R  I+  Y +  +  +            
Sbjct: 412 HQGKVQLIDASACCSSRRKNIGSKNVDITKACRDLIIKAYGAYVDETYNGVDENDNAIIV 471

Query: 465 -SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PM 522
            S+++D    GY +I V  P      LD+ G      +I  +K  P+      D    P+
Sbjct: 472 KSKVMDAIDLGYNKIVVETP-----QLDEDG------NIVMKKKKPVVDKSKRDTENVPL 520

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
            + I  Y   E          +    KV     F   F  
Sbjct: 521 AEDIDAYFEREVIPYNPQAWIDKAKTKVGYEIPFTRTFYE 560



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 568 DPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
           D   + V     + + D +  + ENVP  E I  YF REV P+ P A+I        DK 
Sbjct: 494 DEDGNIVMKKK-KPVVDKSKRDTENVPLAEDIDAYFEREVIPYNPQAWI--------DKA 544

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
             +VGYEI F R FY+YQ       I A ++  E  +   L  +  
Sbjct: 545 KTKVGYEIPFTRTFYEYQQIEPSDVIAARIEYYEKSLMAKLHNLFG 590


>gi|225868038|ref|YP_002743986.1| type I restriction enzyme methylase protein [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701314|emb|CAW98331.1| putative type I restriction enzyme methylase protein [Streptococcus
           equi subsp. zooepidemicus]
          Length = 597

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 194/577 (33%), Positives = 292/577 (50%), Gaps = 43/577 (7%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              T +    A+ IW  A+ L G +K  ++GKVILP T+++RL   L PTR  V E    
Sbjct: 13  ERMTTNIKEKASLIWSIADILRGLYKPHEYGKVILPMTVIKRLHDTLLPTRDRVLEVSKT 72

Query: 62  FGG---SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFE 116
                 + I        +GY FYNTS ++ ++L     N + N  +++  FS+N + I +
Sbjct: 73  LSNIKVAQIRDRKLTDTSGYKFYNTSNFTFNSLLSDPDNIQENFYAFLNGFSENVRDILD 132

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +F+F   I+++     L+ + + F+  + +   DTV    M  I+E L+RRF     E A
Sbjct: 133 NFEFDEEISKMTNNDALFAVIQEFNSQKAYLGADTVTSTDMGYIFEELVRRFSESYGEDA 192

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               T RD+++L T +LL  +         ++RT+YD T GT   L+  M  +    ++ 
Sbjct: 193 GAHFTSRDIIYLMTDILLIDEKP---SDKPIVRTIYDQTMGTSQMLSAMMERIKALDANA 249

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +       GQEL PET+A+  A  +IR    D       N+  GSTLSKD F+G  F Y
Sbjct: 250 DV----TTFGQELNPETYAIAKADTMIRGGNPD-------NMALGSTLSKDAFSGYTFDY 298

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SNPPFG  W+KD+ AV++E + GE GRFG GLPKISDG +LF ++  +KL+      G
Sbjct: 299 LISNPPFGIDWKKDQKAVKEEAELGEKGRFGAGLPKISDGQLLFQLNGISKLKDT----G 354

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R AI+ + S LF+G AG GES IR +++ ND +EAI+ LPTDLF+ T I+TY+WI++  K
Sbjct: 355 RMAIIHNGSALFSGNAGGGESAIREYVIMNDWLEAIIQLPTDLFYNTGISTYIWIITKNK 414

Query: 415 TEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKF--------S 465
            EERRGKVQL++A+  +   R N G K+  I   QR  I+  Y    N  +        S
Sbjct: 415 VEERRGKVQLLDASRAFVKRRKNIGDKKVDIEKAQRELIVQAYGEFANQIYIEGDTAVES 474

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           ++ D   FGYR++ V  P+      +   + R +        S  +         P+ + 
Sbjct: 475 KIFDNNFFGYRKVVVETPMY----DEDGNIVRNKNGKATPDTSKRNTEDI-----PLTED 525

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           +  Y   E          +    K+     F   F  
Sbjct: 526 VDEYITREVLPFNPDAWVDDSKTKIGYEIPFTRLFYK 562


>gi|86152066|ref|ZP_01070278.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840851|gb|EAQ58101.1| putative restriction enzyme subunit S [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 562

 Score =  455 bits (1171), Expect = e-125,   Method: Composition-based stats.
 Identities = 179/609 (29%), Positives = 298/609 (48%), Gaps = 82/609 (13%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV---KVA 76
           + L   +    +  VILP T++RR++  LEPT+  V + Y  +     +LES +   +  
Sbjct: 4   DLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGN 63

Query: 77  GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
              F+N S ++L TL     N R N E+Y+  FS+N K I   F F + +  LE++ +L+
Sbjct: 64  KLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILKFKFKNQLDTLEESNILF 123

Query: 135 KICKNFSGI--------------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            + + F                  +    + +  M  ++E LIR+F  E +E A +  TP
Sbjct: 124 GVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTP 183

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+++ L T L+  P     K+       +YD  CG+GG LT++   + D     +    +
Sbjct: 184 REIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTESKEFITDPEGLIQSKANI 240

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE+ PET+A+C A MLI+           + I+ GSTLS D     +F + LSNPP
Sbjct: 241 YLYGQEINPETYAICKADMLIKGENP-------ERIKFGSTLSNDQ-QNLQFDFMLSNPP 292

Query: 301 FGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +GK WE D+  +  E K         RF  G+   SDG M+FL+++ +K++     G R 
Sbjct: 293 YGKSWENDQKILGVEKKGSNSTCNDPRFSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRI 352

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A V + S LFN    SG   IR+ ++END +EAIVALPT++F+ T I T++WI++N+K+E
Sbjct: 353 ASVHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKKSE 410

Query: 417 ERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            ++GKVQLIN T+   ++ ++   G+K+  +  +   +I +++++  + K  ++LD   F
Sbjct: 411 HKKGKVQLINTTNEEYFSKMKKSLGQKQNEMTKEHIEKITELFLNFISSKDCKILDNEDF 470

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           GY +I + +P  + F+ D    A+L+            +   L+ L+ + Q    +   E
Sbjct: 471 GYTKIIIEKPKSVEFLKDDEKFAKLK-----------DKDKILEKLQELEQNPQDFKNRE 519

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT-EYEN 592
            F+         K L VK  KS     I                      D++ T   E 
Sbjct: 520 EFI---------KFLGVKLKKSEENLII----------------------DSDKTNNTEK 548

Query: 593 VPYLESIQD 601
           +P   +I+ 
Sbjct: 549 IPLKTNIKA 557


>gi|52549663|gb|AAU83512.1| type I site-specific restriction-modification system methylation
           subunit [uncultured archaeon GZfos29E12]
          Length = 455

 Score =  454 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 174/477 (36%), Positives = 266/477 (55%), Gaps = 38/477 (7%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CGTGG LT   + +            +V  GQE+ PE +A+C A ML++      
Sbjct: 1   MYDPACGTGGMLTSCEDFIMSINKE----VDVVLFGQEVNPEIYAICKADMLMKGEN--- 53

Query: 269 RRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                KNI+   STLSKD F   +F + +SNPP+G+KWE+D DAV+ E + G  GRFG G
Sbjct: 54  ----DKNIRGPFSTLSKDQFHDDKFDFIISNPPYGRKWEQDADAVKDEAERGFGGRFGAG 109

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP+I+DG +LFL H+ +K++       R A++ + SPLF G AG GES+IR+W++E+D +
Sbjct: 110 LPRINDGQLLFLQHMISKMKSKEK--SRVAVITNGSPLFTGDAGQGESDIRKWMIESDFV 167

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIIND 446
           EAI+ALP  LFF T I TY+W+L+N K  ER GK+QLI+AT  +  +R   G KR  ++ 
Sbjct: 168 EAIIALPDQLFFNTGIHTYIWVLTNVKPVERVGKIQLIDATSFFKKMRKSLGNKRNYLSA 227

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           D  ++I+++Y   E  K+ ++ D   FGY ++ V RPL++++ + +     L +   +RK
Sbjct: 228 DDIKEIVELYDDFEENKYCKIFDNEVFGYTKVIVERPLQLNYQVAEERRENLYSIPVFRK 287

Query: 507 LSPLHQS-------------FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
           L+   +                 + +   +++I  + +      E       K      S
Sbjct: 288 LAESKKKDPELKLKEEEEGKKKQEEIINNLKKIGNHSYKNWDEFEKKVKEALK--GFDLS 345

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
            +FI   I A    D  AD V D  G  +PD NL + E +P  + I+ YF REV P+ PD
Sbjct: 346 PNFIKNIILALSEHDDIADYVLDKKGNKLPDPNLRDSEKIPLKQDIEKYFDREVKPYYPD 405

Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEE 670
           A +D+        +  +VGYEINF ++FY Y+P R L++I+ ++K V  +I  L  +
Sbjct: 406 ALMDR--------KKDKVGYEINFTKYFYVYKPPRPLEEIEKDIKEVIEEIQELFGD 454


>gi|310826742|ref|YP_003959099.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612]
 gi|308738476|gb|ADO36136.1| hypothetical protein ELI_1148 [Eubacterium limosum KIST612]
          Length = 597

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 179/498 (35%), Positives = 257/498 (51%), Gaps = 36/498 (7%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +    AN IW  A  L+G +K  ++G VILP  +++R    L PTR  V   Y      
Sbjct: 12  TNIQEKANLIWNVANSLFGAYKPHEYGLVILPMVVIKRFHDCLLPTREKVLATYEKVKQL 71

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +        +GY FYNTS+Y+   L +   N + N E+YI  FSDN   I  +  F + 
Sbjct: 72  AVKDGFLRTASGYRFYNTSQYTFERLKADPENIKTNFEAYINGFSDNVIDILANMGFFTQ 131

Query: 124 IARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I R+  AG+LY++  +F+    +++P+ +    M  ++E+L++ F     E A    T R
Sbjct: 132 IERMADAGVLYQVISDFTADNADMNPEKISAIDMGYVFENLVQCFSESYDEEAGAHFTSR 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+++L   LL    D   +++P    T+YD   GT   LT     V       +I     
Sbjct: 192 DIIYLMCDLLTMNADFSGEDAPAK--TVYDMAMGTSQMLTCMEERVHALDKEAEIIC--- 246

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE+ P T  +  A MLIR  +        +N+Q G TL+ D F G  F Y +SNPPF
Sbjct: 247 -YGQEINPFTFGIAKADMLIRGGDP-------ENMQFGDTLNADKFKGYTFDYIISNPPF 298

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G  W+++   VEKEHK G+ GRFG GLP+ SDG MLFL++   KL+      GR AI+ +
Sbjct: 299 GIDWKREAADVEKEHKLGDAGRFGVGLPQKSDGQMLFLLNGIAKLKDT----GRMAIIQN 354

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            S LF G AGSG SEIRR+++END ++AIV LP D F+ T IATY+WI+S  K E  R +
Sbjct: 355 GSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGIATYIWIVSKNKPETHRER 414

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKF--------------SR 466
           + LI+A+    + R   G KR  I +  R  I   Y    +  F              S+
Sbjct: 415 ILLIDASKCCEARRRPIGNKRVDITESCRNLITQAYSEYRSAIFTKTLEDKKTVLTCKSK 474

Query: 467 MLDYRTFGYRRIKVLRPL 484
           +LD  + GY +I V  P 
Sbjct: 475 VLDAISLGYNKITVESPA 492


>gi|229829855|ref|ZP_04455924.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM
           14600]
 gi|229791153|gb|EEP27267.1| hypothetical protein GCWU000342_01961 [Shuttleworthia satelles DSM
           14600]
          Length = 595

 Score =  449 bits (1155), Expect = e-124,   Method: Composition-based stats.
 Identities = 189/590 (32%), Positives = 273/590 (46%), Gaps = 48/590 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +    AN IW  A  L+G +K  ++G VILP  +++R    L PT   V   Y       
Sbjct: 13  NIKEKANLIWNVANSLFGAYKPHEYGLVILPMAVIKRFHDCLLPTHDKVLATYEKIKHLA 72

Query: 67  IDLESFVKVAG-YSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSST 123
           +         G Y FYN S ++   L +   N + N ESYI  FSDN   I  +  F + 
Sbjct: 73  VKEGFLRTATGGYRFYNVSPFTFERLKADPENIKANFESYINGFSDNVIDILANMGFFNQ 132

Query: 124 IARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           I R+  AG+LY++  +F     ++ PD +    M  ++E+L++RF     E A    T R
Sbjct: 133 IDRMNDAGVLYQVISDFCEDSADMSPDKISAVDMGYVFENLVQRFSESYDEEAGAHFTSR 192

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           D+++L   +L    D    +SP    T+YD   GT   LT     +    +  +I     
Sbjct: 193 DIIYLMCDMLTMEADFSSSDSPAK--TVYDMAMGTSQMLTCMEERIKSLDAEAQIIC--- 247

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE+ P T  +  A +LIR  + D       N++ G TL+ D F G  F YC+SNPPF
Sbjct: 248 -YGQEINPFTFGIAKADVLIRGGDPD-------NMRFGDTLNDDKFKGYTFDYCISNPPF 299

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G  W+++   VEKEHK G+ GRFG GLP  SDG MLF+++   KL+      GR AI+ +
Sbjct: 300 GIDWKREAADVEKEHKKGDAGRFGVGLPAKSDGQMLFMLNGIAKLKDT----GRMAIIQN 355

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            S LF G AGSG SEIRR+++END ++AIV LP D F+ T IATY+WI++  K    R +
Sbjct: 356 GSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPNDSFYNTGIATYVWIITKDKPVTHREQ 415

Query: 422 VQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKF-------------SRM 467
           V LI+A+  +   R+  G KR  I +  R  I+  Y   ++  +             S+ 
Sbjct: 416 VLLIDASGCYEQRRSPIGNKRVDITEVCRDLIVKAYSDYDSKTYEKKIDSNTAIVVKSKR 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           LD  + GY +I V  P      LD  G   L+        S            P+ + + 
Sbjct: 476 LDSISLGYNKITVESP-----QLDDDGEPILKKGKKVADTSKRDTETV-----PLDEDMD 525

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
            Y   E          +    KV     F   F          AD +   
Sbjct: 526 VYFEREVLPYRPGAWIDKSKTKVGYEIPFTKTFYEYLEM--ESADEIAKR 573



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 99/268 (36%), Gaps = 28/268 (10%)

Query: 414 KTEERRGKVQLINATDLWTSIRNEGK---KRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           K ++      + N + L+T     G    +R II +D    I+ +         S     
Sbjct: 343 KLKDTGRMAIIQNGSSLFTGDAGSGPSEIRRYIIENDWLDAIVQLPND------SFYNTG 396

Query: 471 RTFGYRRIKVLRPLRMSFI---LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                  I   +P+        +D +G           K     +    ++ + ++ + Y
Sbjct: 397 IATYVWIITKDKPVTHREQVLLIDASGCYEQRRSPIGNK-----RVDITEVCRDLIVKAY 451

Query: 528 PYGWAESFVKESIKSNEA--KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
               ++++ K+   +     K+ ++ +             + D   +P+    G+ + DT
Sbjct: 452 SDYDSKTYEKKIDSNTAIVVKSKRLDSISLGYNKITVESPQLDDDGEPIL-KKGKKVADT 510

Query: 586 NLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQ 645
           +  + E VP  E +  YF REV P+ P A+I        DK   +VGYEI F + FY+Y 
Sbjct: 511 SKRDTETVPLDEDMDVYFEREVLPYRPGAWI--------DKSKTKVGYEIPFTKTFYEYL 562

Query: 646 PSRKLQDIDAELKGVEAQIATLLEEMAT 673
                 +I   ++  E  +   L  +  
Sbjct: 563 EMESADEIAKRIEEHEHSLMQKLRALFG 590


>gi|163788851|ref|ZP_02183296.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1]
 gi|159876088|gb|EDP70147.1| N-6 DNA methylase [Flavobacteriales bacterium ALC-1]
          Length = 603

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 182/593 (30%), Positives = 292/593 (49%), Gaps = 51/593 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M   T S   + NFIW  A+D+    +    +  VILP T+LRRL+ ALE ++  V + +
Sbjct: 1   MNLDTQSLQPIINFIWTVADDVLINKYLENQYQDVILPMTVLRRLDLALEKSKDKVLKTH 60

Query: 60  LAFGGSNIDLESFV----KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKA 113
             F     +L+  +      +G +FYNTS Y++  L     N  +N   Y+  +S+N + 
Sbjct: 61  NEFKSKMDNLDGLLTSETHGSGLAFYNTSPYTMKKLLDDPKNIDSNFLDYLNGYSENVQD 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I   F F + +  LE  G+ + + + F     EL P+ +    M  ++E LIRRF  + +
Sbjct: 121 IISKFKFRNQLETLENGGITFSLIEKFCNPKVELRPEKISPMAMGYMFEDLIRRFNEKTN 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A    TPR+++ L T L+  P     +        +YDP  G+G  LT +  +  +  
Sbjct: 181 AAAGRHFTPREIIELMTHLVYLPVKEKIQNG---TFLVYDPCAGSGAMLTQSKKYATNPD 237

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGK 290
              K       +GQE   E +A C + ML++  + D        I+ GSTLS+  F    
Sbjct: 238 GEIKSKATFHLYGQENTGEMYATCKSDMLLKNEDPDK-------IKFGSTLSEYGFEPNL 290

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEK---EHKNGELGRFGPGLP-------------KISDG 334
           +F++ L+NPP+G  W++D  ++     + ++    RF   +              + +DG
Sbjct: 291 KFNFMLTNPPYGTSWKEDLKSLTNSSNKKQDIVDTRFNLKIKNFKGELEEQTLASRSNDG 350

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            ++F++H+ +K++ P +GG R A V + S LF G AGSGES IR+++LENDL+E I+ LP
Sbjct: 351 QLMFMLHMLSKMKDPKDGGSRIASVHNGSALFTGDAGSGESGIRQYILENDLLECIIQLP 410

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINAT---DLWTSIRN-EGKKRRIINDDQRR 450
            D+F+ T IATY+WILSN K E+R+GKVQLINA+   +    +R   G KR  +N +   
Sbjct: 411 NDMFYNTGIATYIWILSNVKEEKRKGKVQLINASSKDEFSKKMRKPLGDKRVELNPNHIL 470

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            I ++Y   E  ++S++ +   FGY +I V +P R     D+ G       +T +K +P 
Sbjct: 471 DIQNLYFDFEENQYSKIFNNEDFGYYQITVHQPER-----DEDG-----KIVTDKKGNPK 520

Query: 511 HQSFWLDILK-PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
                 D    PM + I  Y   E          + K +KV  +      F  
Sbjct: 521 SDKDLKDSENVPMTEDIDTYFKREVIPYAPDAWYDKKKMKVGYNIPLTKHFYK 573



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 82/231 (35%), Gaps = 28/231 (12%)

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             + +   +   D++ +     +  +L       R+ KV               A  + +
Sbjct: 400 NDLLECIIQLPNDMFYNTGIATYIWILSNVKEEKRKGKVQLIN-----------ASSKDE 448

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
            + +   PL           ++     Y   E      I +NE                 
Sbjct: 449 FSKKMRKPLGDKRVELNPNHILDIQNLYFDFEENQYSKIFNNEDFG---------YYQIT 499

Query: 562 NAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
                +D     VTD  G    D +L + ENVP  E I  YF REV P+ PDA+      
Sbjct: 500 VHQPERDEDGKIVTDKKGNPKSDKDLKDSENVPMTEDIDTYFKREVIPYAPDAW------ 553

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
              DK+  +VGY I   + FY+Y   R L  I  E+  +E +   LL+E+ 
Sbjct: 554 --YDKKKMKVGYNIPLTKHFYKYDELRNLNIITNEILSLEKETDGLLKEII 602


>gi|313634903|gb|EFS01308.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 421

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 176/432 (40%), Positives = 253/432 (58%), Gaps = 22/432 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF--GG 64
           +     +FIW  AE L G++K  ++G+VILP  ++RR +C LE T+  V E+Y       
Sbjct: 2   NFQDKVSFIWSIAEVLRGEYKPENYGEVILPLVVIRRFDCVLEKTKPEVLEQYKILQNKP 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +      K +   FYN S Y  + L     N  +N + Y+  FS NA  I + F+F S
Sbjct: 62  EGVQTALLTKTSKEDFYNISNYGFNNLLSDPDNIADNFKDYLNGFSKNANEIIQYFNFDS 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +L++  LLY++ K FS I+LHP+TV +  M  I+E LIRRF    +  A D  TPR+
Sbjct: 122 EIDKLDRNDLLYEVLKRFSEIDLHPNTVSNIEMGYIFEELIRRFSE--NAEAGDHYTPRE 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V+ L   LL   DD +   + G+ +TLYD   GTGG  + A  ++            L+ 
Sbjct: 180 VIRLMVHLLF-NDDRIDIATEGITKTLYDCAAGTGGMGSVANEYMKSHN----NLGELIF 234

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           H QE+  E++A+  + +L+++ +++       NI+ G+TL+ D F    F + +SNPP+G
Sbjct: 235 HAQEVNEESYAIAKSDLLLKKEDAN-------NIRLGNTLTNDKFKTDTFDFMISNPPYG 287

Query: 303 KKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAI 358
             W+K + AV+ EH   G  GRFG GLP+ SDG +LFL HL +K++        G R AI
Sbjct: 288 VDWKKVEKAVKDEHNDLGFNGRFGAGLPRTSDGQLLFLQHLVSKMKPVTEENPYGSRIAI 347

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +++ SPLF G AGSGESEIRR+L ENDL+E +VALP DLF+ T I+TY+WIL+N K   R
Sbjct: 348 IMNGSPLFTGDAGSGESEIRRYLFENDLVEGLVALPNDLFYNTGISTYIWILTNNKETHR 407

Query: 419 RGKVQLINATDL 430
           RGKV L+NA D 
Sbjct: 408 RGKVTLVNAVDF 419


>gi|126434813|ref|YP_001070504.1| N-6 DNA methylase [Mycobacterium sp. JLS]
 gi|126234613|gb|ABN98013.1| N-6 DNA methylase [Mycobacterium sp. JLS]
          Length = 371

 Score =  439 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 151/382 (39%), Positives = 214/382 (56%), Gaps = 22/382 (5%)

Query: 303 KKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGGRAAIV 359
             W   + AV  E++  G  GRFGPGLP++SDGS+LFLMHL +K++      GG R AIV
Sbjct: 1   MAWNTQQKAVTDEYEQRGFAGRFGPGLPRVSDGSLLFLMHLISKMQPVKGGEGGSRLAIV 60

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L+ SPLF G AGSGES IR+W++ENDL++AI+ALPTD+F+ T IATY+WIL N K  +R+
Sbjct: 61  LNGSPLFTGGAGSGESNIRQWIIENDLLDAIIALPTDMFYNTGIATYIWILDNNKPAKRK 120

Query: 420 GKVQLINATDLWTSIRN-EGKKRRIINDDQRRQILDIYVSREN-------GKFSRMLDYR 471
           GKVQLINA D++  +R   G KR+ +      +I  +Y S  N          S++    
Sbjct: 121 GKVQLINAVDMYGKMRKSLGSKRKELRPKDIERICHLYDSFRNEHGTDERPSHSKVFKSE 180

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            FGY  + V RPL++ F   +  +  + A  +  KL P  Q+   + L  ++   + +  
Sbjct: 181 EFGYSTVTVERPLQLRFTPTEEKVEEVLAQKSIDKLKPGEQAAVRNALTGLIG--WEWMH 238

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYE 591
            + FV E +K    K    K     +    +  G  D +A  VTD  G+  PD  L + E
Sbjct: 239 RDEFVTE-LKDALRKAGLTKPGAPLVKTIWSTIGEHDEKALIVTDSKGDTEPDPALRDTE 297

Query: 592 NVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQ 651
           NVP  + I +YF REV PHVPDA+ID            +VGYEI F R FY+Y   R L+
Sbjct: 298 NVPLTDDIDEYFAREVVPHVPDAWIDHDK--------TKVGYEIPFTRHFYRYVAPRPLE 349

Query: 652 DIDAELKGVEAQIATLLEEMAT 673
           +I  +L+ +  +I  +L E+  
Sbjct: 350 EIQKDLRVLVGEIQAMLAEVGA 371


>gi|56421441|ref|YP_148759.1| hypothetical protein GK2906 [Geobacillus kaustophilus HTA426]
 gi|56381283|dbj|BAD77191.1| hypothetical protein [Geobacillus kaustophilus HTA426]
          Length = 372

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 212/380 (55%), Gaps = 26/380 (6%)

Query: 312 VEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFN 367
           + +EH+  G  GRFG GLP+ISDG +LFL HL +K++        G R AI+++ SPLF 
Sbjct: 1   MREEHESKGFNGRFGAGLPRISDGQLLFLQHLVSKMKPVSEENPKGSRIAIIMNGSPLFT 60

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G AGSGESEIRR+L+ENDL+E IVALP  LF+ T I+TY+WIL+N K   R+GK+QL+NA
Sbjct: 61  GDAGSGESEIRRYLIENDLVEGIVALPDQLFYNTGISTYIWILTNNKNPLRKGKIQLVNA 120

Query: 428 TDLWTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
            + +  ++   G KR  ++++   +I+ IY   + G+  ++ D   FGYR+I + RPLR+
Sbjct: 121 VNFYQKMKKSLGDKRNELSEEHINEIVRIYGDFKEGEHCKIFDNEDFGYRKITIERPLRL 180

Query: 487 SFILDKTGLARLEADITWRKLS-------------PLHQSFWLDILKPMMQQIYPYGWAE 533
           +F +D+  +  L     ++ L+                +     I++ ++       +  
Sbjct: 181 NFKIDEERIKELYNQTAFKNLATSKKRGEAGLKEIEEGKRLQEQIIEALLSIKDGVVYKN 240

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENV 593
                       K   +K + + + A ++A   KD  AD   D  G   PD +L + ENV
Sbjct: 241 REEFTKKIKELFKEKDIKINATLLKAILSALSEKDETADICRDSKGNPEPDPDLRDTENV 300

Query: 594 PYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDI 653
           P  E I +YF REV P+VPDA+I        D+   ++GYEI F R+FY+Y P R  +++
Sbjct: 301 PLKEDIYEYFEREVKPYVPDAWI--------DETKTKIGYEILFTRYFYKYTPLRSSEEV 352

Query: 654 DAELKGVEAQIATLLEEMAT 673
             E+K +E  I   L+++  
Sbjct: 353 IKEIKELEGSILEKLKKVLG 372


>gi|201067948|ref|ZP_03217819.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004472|gb|EDZ04965.1| hypothetical protein CJBH_1918c [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 469

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 169/530 (31%), Positives = 270/530 (50%), Gaps = 71/530 (13%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           + +  M  ++E LIR+F  E +E A +  TPR+++ L T L+  P     K+       +
Sbjct: 1   MSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLI 57

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YD  CG+GG LT++   + D     +    +  +GQE+ PET+A+C A MLI+       
Sbjct: 58  YDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGENP--- 114

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFG 325
               + I+ GSTLS D     +F + LSNPP+GK WE D+  +  E K         RF 
Sbjct: 115 ----ERIKFGSTLSNDQ-QNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFS 169

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+   SDG M+FL+++ +K++     G R A V + S LFN    SG   IR++++END
Sbjct: 170 VGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSD--SGMVAIRKYIIEND 227

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD--LWTSIRN-EGKKRR 442
            +EAIVALPT++F+ T I T++WI++N+K E ++GKVQLINAT+   ++ ++   G K+ 
Sbjct: 228 YLEAIVALPTNMFYNTGIPTFIWIITNKKPEHKKGKVQLINATNKEYFSKMKKSLGSKQN 287

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +  +   +I  +++   + K  ++LD   FGY +I + +P  + F+ D    A+L+   
Sbjct: 288 EMTKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEFLKDDEKFAKLK--- 344

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
                    +   L+ L+ + +    +   E F+         K L VK  KS     I 
Sbjct: 345 --------DKDKILEKLEQLEKNPQDFKNREEFI---------KFLGVKLKKSEENLII- 386

Query: 563 AFGRKDPRADPVTDVNGEWIPDTNLT-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
                                D++ T   E +P    IQ+Y+  EV P+V +++I     
Sbjct: 387 ---------------------DSDKTNNTEKIPLKTDIQNYYDTEVKPYVANSWIAWDSA 425

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
                    VGYEI FN++FY Y P RKL +ID+ELK +E +   LL ++
Sbjct: 426 S--------VGYEILFNKYFYTYTPPRKLSEIDSELKALEKETQELLNKI 467


>gi|257790529|ref|YP_003181135.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257474426|gb|ACV54746.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 799

 Score =  429 bits (1102), Expect = e-117,   Method: Composition-based stats.
 Identities = 165/489 (33%), Positives = 243/489 (49%), Gaps = 37/489 (7%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKV 75
           W  A+ L G +K  ++G VILP T+++R    L PT   V E    +    +      + 
Sbjct: 26  WNVADTLRGPYKPHEYGLVILPMTVIKRFHDCLLPTHGKVVEAAEEYKNFAVKDGFLREA 85

Query: 76  AGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-- 131
           +GY FYNTS+++  TL +   N  +N + Y+  FS+N + I    DF   I RL      
Sbjct: 86  SGYPFYNTSKFTFETLKADPANIEDNFKDYLNGFSENVQDILARMDFFRQIERLSDPDAP 145

Query: 132 LLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           LLY++  +F     ++ P+ +    M  I+E+LI+RF     E A    T RD+V+L T 
Sbjct: 146 LLYQVVSDFCAERADMSPEKIKPVDMGYIFENLIQRFSESYDEDAGAHFTSRDIVYLMTD 205

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           LL+  D  +F     + +T+YD T GT   L+     +       ++       GQE  P
Sbjct: 206 LLIAADPHVFDGD-RISKTVYDQTMGTSQMLSCTEERLRQLDDDARV----TCFGQEFNP 260

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +  A  LIR  +         N++ G TLS D F   +F YC+SNPPFG  W+ ++
Sbjct: 261 FTFGIAKASALIRGED-------DANMRFGDTLSSDKFADYKFDYCISNPPFGGDWKLEE 313

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
            AV KE K     RF  GLP   DG MLF+++   KL+      G   IV  +SPL+ G+
Sbjct: 314 TAVRKEAKLTG-SRFHVGLPARGDGQMLFMLNGIAKLKDE----GVMVIVQDASPLYKGK 368

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
             SGE +IR ++LEND ++AI+ L  D F+ T + T+LW+++  K E+R GKVQLI+A+ 
Sbjct: 369 PESGEDKIRSYILENDWLDAIIRLSGDAFYNTGLVTFLWVINKGKPEKRAGKVQLIDASG 428

Query: 430 LWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKFSR-------------MLDYRTFGY 475
                 R  GKKR  I    R  +L+ +   E   +S              + D   FGY
Sbjct: 429 CCVPRNRPIGKKRNDITKFCRDLVLEAFSDFETKDYSSSSESGNAIHVRSLVCDAADFGY 488

Query: 476 RRIKVLRPL 484
            R+ V  PL
Sbjct: 489 NRVGVCEPL 497


>gi|254410687|ref|ZP_05024466.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196182893|gb|EDX77878.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 440

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 145/446 (32%), Positives = 224/446 (50%), Gaps = 51/446 (11%)

Query: 6   GSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----L 60
            +   L +FIW  A+D L   F    +  VILP  +LRRL+C LE T+  V E+      
Sbjct: 4   STHNKLVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEETKDKVTEEVRFQRE 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAI 114
             G + +D E   + + Y FYN S+++L  L ST          N ++Y+  FS+N K I
Sbjct: 64  DVGLTELDPEGLREASDYVFYNVSDWTLKKLVSTAANNRQILEENFKAYLNGFSENVKEI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-------------PDRVMSNIYEH 161
              FD  S I ++ ++ +L  + + F+  E++                  +  M  ++E 
Sbjct: 124 INRFDLRSQIRKMSQSDVLLDVLEKFTSPEINLSPHEITTPDGRKLPGLSNLGMGYVFEE 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LIRRF  E +E A +  TPR+V+HL T L+  P               YD  CG+GG LT
Sbjct: 184 LIRRFNEENNEEAGEHFTPREVIHLMTHLVFLPIKDRL----PPTLLGYDGACGSGGMLT 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           ++ N + D          +  +G+E+  ET+A+C + M+I+           +NI+ GST
Sbjct: 240 ESQNFLQDPNGEIAADTQVFLYGKEVNGETYAICKSDMMIKGNNP-------ENIKFGST 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL------------- 328
           L+ D F+  +F + L NPP+GK W+  +  +    KN    RF   L             
Sbjct: 293 LATDEFSDLKFDFMLENPPYGKSWKTSQKYIMD-GKNVLDSRFEVKLKSFQGEWETIGAV 351

Query: 329 PKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + +K++       G R A V + S LF G AGSGES IRR+++END 
Sbjct: 352 PRSSDGQLLFLMDMVSKMKPLEQSPLGSRIASVHNGSALFTGDAGSGESNIRRYIIENDW 411

Query: 387 IEAIVALPTDLFFRTNIATYLWILSN 412
           +EAI+ LP ++F+ T I+TY++ +  
Sbjct: 412 LEAIIQLPQNMFYNTGISTYIYGIRK 437


>gi|167039867|ref|YP_001662852.1| N-6 DNA methylase [Thermoanaerobacter sp. X514]
 gi|300915377|ref|ZP_07132691.1| N-6 DNA methylase [Thermoanaerobacter sp. X561]
 gi|166854107|gb|ABY92516.1| N-6 DNA methylase [Thermoanaerobacter sp. X514]
 gi|300888653|gb|EFK83801.1| N-6 DNA methylase [Thermoanaerobacter sp. X561]
          Length = 552

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/459 (35%), Positives = 238/459 (51%), Gaps = 39/459 (8%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDNA 111
            +K L   G      +    AG SF N+S + L  L S       + +  +Y+  FS N 
Sbjct: 1   MKKKLDEAGITNQTAALCNAAGQSFCNSSPFCLRDLTSRAKKQTLKADFIAYLDGFSPNV 60

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNF----------------SGIELHPDTVPDRVM 155
           + I + F F + I  +  A +L  + + F                   E+    + +  M
Sbjct: 61  QEILDKFKFRNQIDTMIDADILGAVIEKFVSPTINLSPNPVYKDDEKKEIRLPGLDNHTM 120

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             I+E LIRRF  E +E A +  TPRDVV L   L+  P     K+      + YD  CG
Sbjct: 121 GVIFEELIRRFNEENNEEAGEHFTPRDVVELMADLIFVPVADKIKD---ATYSCYDGACG 177

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TGG LT A + + +          +   GQE+ PET+A+  + +L++      + D + +
Sbjct: 178 TGGMLTVAQDRLIELAEKAGRKVSIHLFGQEINPETYAIAKSDLLLQG-----QGDQADH 232

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF---------GP 326
           I  GSTLS D F   +F + LSNPP+GK W+ D D +  + K+    RF           
Sbjct: 233 IGFGSTLSNDQFPTYQFDFMLSNPPYGKSWKVDADKLGGK-KDIMDSRFVTNFADDPNFS 291

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +P+ SDG +LFL++   K++     G R   V + S LF G AGSGES  RR+L+ENDL
Sbjct: 292 MIPRTSDGQLLFLLNNVAKMKKTTELGSRIVEVHNGSSLFTGDAGSGESNARRYLIENDL 351

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIIN 445
           +EAI+ALP ++F+ T I TY+W+LSN K E R+ K+QLI+AT L + +R N GKK     
Sbjct: 352 VEAIIALPENMFYNTGIGTYIWVLSNNKAEHRKSKIQLIDATLLKSPLRKNLGKKNCEFT 411

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
            + RRQILD+Y++ E  ++S++ D   FGY ++ VLRP 
Sbjct: 412 SEIRRQILDLYMAFEENEYSKIFDNNEFGYWKVTVLRPA 450


>gi|302380078|ref|ZP_07268553.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3]
 gi|302312098|gb|EFK94104.1| N-6 DNA Methylase [Finegoldia magna ACS-171-V-Col3]
          Length = 480

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/491 (31%), Positives = 236/491 (48%), Gaps = 52/491 (10%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT A NH+ +          +   GQE+  +++AV +A MLI+  +       ++N + 
Sbjct: 1   MLTTAYNHLHNLNPKA----DIRLFGQEIMGQSYAVGLAEMLIKGQD-------ARNFKH 49

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKIS 332
             T  +D F   +  + L NPPFG  W         + AV + HK G   R+  GLP   
Sbjct: 50  ADTFKEDCFEDTKMRFVLENPPFGMSWGGKDAKAGQEQAVLENHKRGNDSRWPAGLPSSG 109

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           D  +LF+    +K++      GRAAI+ + SPLFNG   SGES+IRRWLLENDLIEAI+A
Sbjct: 110 DAQLLFMQSAIDKMDDEH---GRAAIITNGSPLFNGGVSSGESQIRRWLLENDLIEAIIA 166

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQ 451
           +PTDLF+ T IATY+WILS  K +ER GK+QLI+AT+++ ++R   G KR+    + R+ 
Sbjct: 167 MPTDLFYNTGIATYVWILSKNKRQERIGKIQLIDATEIYHTLRKSLGNKRKEFTAEDRKT 226

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE------------ 499
           I  +Y        S++ D   F YR   V++PL+ S+ ++   +  LE            
Sbjct: 227 ITKLYSDFVENDKSKIYDNEEFIYREYTVMQPLQRSYAINDERIENLETSGKLNSFYDKT 286

Query: 500 -------ADITWRKLSPLH----------QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
                     T  KL+             +  +  I + + + I    +      E + +
Sbjct: 287 KHDEILEKQETSEKLTKTETNNLKKYTENEKTYNKIFEILKENITDKKYMSVDEFEPVVN 346

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDY 602
           +     ++  +K+     I+     D  AD  TD  G  I D +  + E V   E+I+DY
Sbjct: 347 DLL--SELSLNKTVFNNIIDGLSEMDKEADIQTDKKGNVIYDKDTKDTEIVNVRENIEDY 404

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
             REV PH+PDA               + G EI F R+FY+YQ  R  +++  E   +E 
Sbjct: 405 MKREVLPHIPDAKSFFEEDVTLKNPKIKTGAEIPFTRYFYKYQAPRPSEELAQEFLELED 464

Query: 663 QIATLLEEMAT 673
            +   ++E+  
Sbjct: 465 IVNQKVKELFG 475


>gi|254448309|ref|ZP_05061771.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
 gi|198262176|gb|EDY86459.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
          Length = 580

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 129/584 (22%), Positives = 222/584 (38%), Gaps = 58/584 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T +   L +F+W+ A+ L G+   +++   I     L+RL  A E  + +V + Y+
Sbjct: 1   MSQ-TITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYM 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112
             G S                +FY         +     +    L      I   + + +
Sbjct: 60  GKGKSEDQARELADDEDEYDKTFYIPPVARWGAIKDLKHDIGAELNKATEAIEEHNGSLE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171
            +    DF +   +L     L  +  +FS   L  +       +   YE+LI+ F     
Sbjct: 120 GVLVSIDF-NIKNKLSDKK-LQDLLSHFSRHRLRNEDFERPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  +LL           P     +YDPT G+GG L    NH+A  G
Sbjct: 178 KKGGEFYTPSEVVQLLVSLL----------KPHAGMRIYDPTAGSGGMLVQTRNHLATHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
              + P  L  +GQE+   T A+C   M +  +        S +I++G TL         
Sbjct: 228 ---ENPSNLSLYGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLRDPQHTQGG 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +   F   ++NPPF  K        ++E +N   GRF  G P    G + F+ H+   L 
Sbjct: 278 SLMTFDRVIANPPFSLK-----KWGKEEAENDPYGRFPYGTPPKDAGDLAFVQHMIASL- 331

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V+    LF G     E  IR+ +LE+DL+EA+V LP  LF+ T I   L
Sbjct: 332 ---NAEGMMGVVMPHGVLFRGA---SEKAIRKGILEDDLLEAVVGLPAALFYGTGIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            I++  K +ER+GKV  IN+   +      GK +  +      +I++ + +  + K +S+
Sbjct: 386 LIINKNKPQERKGKVLFINSELEYEE----GKNQNKLRQQDIEKIVNTFENFADIKRYSK 441

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           ++           +                          +  +   +  + +       
Sbjct: 442 VVPLEEIEENDFNLNIRRYADTSPPPEIYDVRAILHGGIPVREVENEYIREEILEGFDVS 501

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             +   +        S +      K       A  +A G  D +
Sbjct: 502 VVFVKRDE-----EPSADEGYYDFKPEIDSKEAIRDAVGEVDAK 540


>gi|117922226|ref|YP_871418.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
 gi|117614558|gb|ABK50012.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
          Length = 574

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 125/477 (26%), Positives = 200/477 (41%), Gaps = 52/477 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   +   L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + YL
Sbjct: 1   MTQK-LTLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112
             G +    E+  +       +F+       S L     +    L      I  ++ + +
Sbjct: 60  GKGKTKEQAEALAQDEDEYDKTFFVPKSARWSALKDLKHDIGATLNKATEAIEEYNSSLE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171
            +    DF +   +L     L  +  +FS   L  +       +   YE+LI+ F     
Sbjct: 120 GVLVTIDF-NIKNKLSDKK-LRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G
Sbjct: 178 KKGGEFYTPSEVVSLLVALL----------KPKAGMRIYDPTSGSGGMLVQTRNYLAAHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
              + P  L   GQE+   T A+C   M +  +       LS +I++G TL +       
Sbjct: 228 ---ENPGNLSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGG 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF           + E  N   GRF  G P    G + F+ H+     
Sbjct: 278 ELMTFDRVIANPPFSL-----AKWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V+    LF G   S E  IR+ +LE+DL+EA++ LP+ LF+ T I   L
Sbjct: 331 --TNAEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTGIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            I++ RK  ER+GKV  IN    +      GK +  +      +I+  + + +N K 
Sbjct: 386 LIINKRKAAERKGKVLFINGELEYEE----GKNQNKLRPQDIEKIVTTFNNYQNIKR 438


>gi|77166354|ref|YP_344879.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254435849|ref|ZP_05049356.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
 gi|76884668|gb|ABA59349.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|207088960|gb|EDZ66232.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
          Length = 574

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/486 (24%), Positives = 195/486 (40%), Gaps = 53/486 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    +   L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + YL
Sbjct: 1   MSH-NITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112
             G ++ +             +FY         L     +    L      I   + + +
Sbjct: 60  GKGKTDAEARELANDEDEYDKTFYIPPIARWGALKDLKHDIGTELNKATEAIEEVNPSLE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171
            +    DF +   +L     L  + ++FS   L  +       +   YE+LI+ F     
Sbjct: 120 GVLVSIDF-NIKNKLSDKK-LRDLLRHFSRHRLRNEDFEHPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G
Sbjct: 178 KKGGEFYTPSEVVRLLVALL----------KPQAGMRIYDPTAGSGGMLVQTRNYLARHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
              + P  L   GQE+   T A+C   M +  +        S +I++G TL +       
Sbjct: 228 ---ENPANLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQGG 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF  K        + E      GRF  G P    G + F+ H+   L 
Sbjct: 278 ELMTFDRVIANPPFSLK-----KWGKDEADKDAYGRFPYGTPPKDAGDLAFVQHMIASL- 331

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V+    LF G     E  IR+ +L++DL+EA++ LP  LF+ T I   L
Sbjct: 332 ---NAEGMMGVVMPHGVLFRGA---SEKAIRQGILKDDLLEAVIGLPAALFYGTGIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            IL+  K  ER GKV  IN    +      GK +  +      +I+  +      K +S+
Sbjct: 386 LILNKNKPAERTGKVLFINGELEFQE----GKNQNKLRPQDMDKIVRTFDDYREIKRYSK 441

Query: 467 MLDYRT 472
           ++    
Sbjct: 442 VVSLAD 447


>gi|120597148|ref|YP_961722.1| type I restriction-modification system, M subunit [Shewanella sp.
           W3-18-1]
 gi|120557241|gb|ABM23168.1| type I restriction-modification system, M subunit [Shewanella sp.
           W3-18-1]
          Length = 574

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/486 (25%), Positives = 208/486 (42%), Gaps = 53/486 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   +   L +F+W+ A+ L G+   +++   I     L+RL  A E  + +V + YL
Sbjct: 1   MTQK-LTLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQESVVQYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112
             G +    E+  +       +F+       S L     +    L      I  ++ + +
Sbjct: 60  DKGKTQEQAEALAQDEDEYDKTFFVPQTARWSELKDLKHDIGATLNKATEAIEEYNSSLE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171
            +    DF +   +L     L  +  +FS   L  +       +   YE+LI+ F     
Sbjct: 120 GVLVTIDF-NIKNKLSDKK-LRDLLSHFSKYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G
Sbjct: 178 KKGGEFYTPSEVVSLLVALL----------KPKAGMRIYDPTSGSGGMLVQTRNYLAAHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
              + P  L   GQE+   T A+C   M +  +       LS +I++G TL +       
Sbjct: 228 ---ENPGNLSLFGQEMNLNTWAICKMNMFLHGV-------LSADIRKGDTLREPKHTEGG 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF           + E  N   GRF  G P    G + F+ H+     
Sbjct: 278 ELMAFDRVIANPPFSL-----AKWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V+    LF G   S E  IR+ +LE+DL+EA++ LP+ LF+ T+I   L
Sbjct: 331 --TNAEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTSIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            I++ RK  +R+GKV  IN    +      GK +  +      +I+  + + +N K +++
Sbjct: 386 LIINKRKAADRKGKVLFINGELEYEE----GKNQNKLRPQDIEKIVTTFNNYQNIKRYAQ 441

Query: 467 MLDYRT 472
           ++D   
Sbjct: 442 VVDISE 447


>gi|120555301|ref|YP_959652.1| type I restriction-modification system, M subunit [Marinobacter
           aquaeolei VT8]
 gi|120325150|gb|ABM19465.1| type I restriction-modification system, M subunit [Marinobacter
           aquaeolei VT8]
          Length = 574

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/583 (21%), Positives = 213/583 (36%), Gaps = 62/583 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    +   L +F+W+ A+ L G+   +++   I     L+RL  A E  +  V + Y+
Sbjct: 1   MSH-NITLQQLESFLWEAADILRGNMDASEYKDYIFGMMFLKRLSDAFEEAQEGVIQYYM 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112
             G +                +FY         +     +  + L      I  ++   +
Sbjct: 60  DKGKTEDQARELADDEDEYDKTFYIPPVARWGVIKDLKHDIGSGLNTATEAIEEYNPVLE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171
            +    DF +   +L     L  +  +FS   L  +       +   YE+LI+ F     
Sbjct: 120 GVLVSIDF-NIKNKLSDKK-LRDLLSHFSRYRLRNEDFERPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    N++A  G
Sbjct: 178 KKGGEFYTPSEVVQLLVALL----------KPHAGMRIYDPTAGSGGMLVQTRNYLAAHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
              + P  L   GQE+   T A+C   M +  +        S +I++G TL +       
Sbjct: 228 ---ENPSNLSLFGQEMNLNTWAICKMNMFLHGV-------YSADIRKGDTLREPQHTQGG 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF  K        ++E      GRF  G P    G + F+ H+   L 
Sbjct: 278 ELMTFDRVIANPPFSLK-----KWGKEEADGDSYGRFPYGTPPKDAGDLAFVQHMIASLN 332

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   +V+    LF G   S E  IR+ +L +DL+EA+V LP  LF+ T I   L
Sbjct: 333 SE----GMMGVVMPHGVLFRG---SSEKAIRQGILNDDLLEAVVGLPAALFYGTGIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            I++  K  ER+GKV  IN+   +      GK +  +      +I+  +      K    
Sbjct: 386 LIINKNKPAERKGKVLFINSELEYEE----GKNQNKLRQQDIEKIVQTFDDYAELKRYSK 441

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +         + +       + L+    A          +  +       + +   + I 
Sbjct: 442 V---------VTLAEIAENDYNLNIRRYADTSPPPEIFDVRAILHGGIP-VREVESEYIR 491

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
                +  V       +A+    K       A     G  D +
Sbjct: 492 EEILEDFDVSTVFVKRDAEYYDFKPEIGTKEAIRETVGEIDAK 534


>gi|209695268|ref|YP_002263197.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238]
 gi|208009220|emb|CAQ79477.1| N-6 adenine-specific DNA methylase [Aliivibrio salmonicida LFI1238]
          Length = 587

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/480 (25%), Positives = 190/480 (39%), Gaps = 52/480 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S   L +F+W+ A+ L G+   ++F   I     L+RL  A E ++  V + YL
Sbjct: 1   MTNK-LSLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRLSDAFEESQEKVIQYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLESY---IASFSDNAK 112
             G +    E           +F+       S L     N    L      I  F+   +
Sbjct: 60  DKGKTQAQAEELANDEDEYDSTFFIPENARWSVLKDLKHNIGEQLNKATESIEEFNSALE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171
            +    DF +   +L     L  +  +F+   L  +       +   YE+LI+ F     
Sbjct: 120 GVLVTIDF-NIKNKLSDKK-LQDLLSHFNKYRLRNEDFDRPDLLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L   LL           P     +YDPT G+GG L    N +   G
Sbjct: 178 KKGGEFYTPSEVVQLLVELL----------KPHAGMRIYDPTSGSGGMLVQTRNQLEKQG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
            +      L  +GQE+   T A+C   M +  +        + +I++G TL         
Sbjct: 228 ENA---ANLSLYGQEMNLNTWAICKMNMFLHGV-------QNADIRKGDTLRDPQHTEGG 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF  K        + E  N   GRF  G P    G + F+ H+     
Sbjct: 278 ELMSFDRVIANPPFSLK-----KWGKDECDNDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V+    LF G   S E  IR+ +LE+DL+EA+V LP+ LF+ T I   L
Sbjct: 331 --TNSEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVVGLPSGLFYGTGIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            I++  K   R+GKV  IN    +      GK +  +  +   +I+  + +        +
Sbjct: 386 LIINKNKPSARKGKVLFINGELEFAE----GKNQNKLRPEDIAKIVTTFENHSFESQCDI 441


>gi|237653815|ref|YP_002890129.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625062|gb|ACR01752.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 498

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/534 (23%), Positives = 216/534 (40%), Gaps = 59/534 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + + A L + +W++A  L G     DF   I P    +R+    +       E+Y 
Sbjct: 1   MHQPSITLAQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQ 53

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114
                  D +       + F    +   + +   + N    L+     I   + +    +
Sbjct: 54  EIVDETGDEQLAWFPESHRFQIPEDCHWNDVRAKAANVGAALQHAMREIEKANPDTLYGV 113

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +S+   RL  A LL  + ++FS + L    V   ++ + YE+LI++F    ++ A
Sbjct: 114 FGDAQWSNK-ERLSDA-LLKDLIEHFSKLPLGNGNVTSDLLGDAYEYLIKKFADATNKKA 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     
Sbjct: 172 GEFYTPRSVVRLMIDML----------DPREGETIYDPACGTGGMLLAAVQHVQEMHGDV 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
           K       +GQE    T ++    + +  +E          I +G TL    F       
Sbjct: 222 K-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFKIVRGDTLRNPAFFDGDRLS 273

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPPF       +   E    N   GR   GLP  S G   ++ H+   +    
Sbjct: 274 AFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---A 325

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +G GR A+VL    LF     S E  IR+ LL+ DLIEA++ L  +LF+ T +A  + +L
Sbjct: 326 DGTGRMAVVLPQGALFR---KSAEGGIRQKLLKLDLIEAVIGLAPNLFYGTGLAACILVL 382

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-- 468
             +K   RR KV + +A+ L+      G+ +  +  +   QIL  Y   ++ + +  +  
Sbjct: 383 RKKKPAARRRKVLVADASRLFRR----GRAQNYLEAEHAAQILGWYRDFQDVQDAVRVVA 438

Query: 469 -DYRTFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            D        + + R    PL+         +A  +  +   + +    +  + 
Sbjct: 439 LDEIEAEDWTLNISRYVLPPLQEDIPPLPEAIAAFKDALQRCREAEERLAQVMA 492


>gi|328951823|ref|YP_004369157.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452147|gb|AEB07976.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
          Length = 499

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 117/506 (23%), Positives = 201/506 (39%), Gaps = 52/506 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   T S + L + +W+ A  L G     DF   + P    +RL    +       ++  
Sbjct: 1   MDNSTLSLSQLESHLWEAANILRGPVDAADFKTYVFPLLFFKRLSDVYDEEYQEALKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114
               +  D E       Y F    +     +   +TN    L++    I + +      I
Sbjct: 59  ----AGGDEEYARFPQNYRFQIPEDCHWRDVRAVATNVGQALQTAMRCIETANPETLYGI 114

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +++   RL  A LL  + ++FS I L        ++   YE+LI++F    ++ A
Sbjct: 115 FGDAQWTNK-DRLSDA-LLRDLIEHFSKIPLGNAVAQADILGQSYEYLIKKFADLTNKKA 172

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV L   +L           P    ++YDP CGTGG L +A++HV +     
Sbjct: 173 GEFYTPRAVVRLMVNIL----------DPQEGESIYDPACGTGGMLLEAIHHVREHHGDV 222

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
           +        GQE    T A+    +++              I +  TL +  F       
Sbjct: 223 RT-LWGRLFGQEKNLTTSAIARMNLILHG-------AADFKIIRADTLRQPAFFSGDNLA 274

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   ++NPPF  +   ++            GR   G+P    G   ++ H+   +    
Sbjct: 275 TYDCVIANPPFSLEKWGEEVWTSD-----PFGRNFAGMPPAKSGDFAWVQHMIKSMAPKT 329

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR A+VL    LF   A   E +IR+ LL  DL+EA++ L  +LF+ T +A  + I 
Sbjct: 330 ---GRMAVVLPHGVLFRMGA---EGKIRQKLLNMDLLEAVIGLGPNLFYGTGLAACILIF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469
             RK  E R KV +I+A+  +     +G+ +  +  D    I   Y    + +  +R++ 
Sbjct: 384 RLRKPPEHRNKVLIIDASQEF----KKGRAQNELLPDHVAHIYTWYRDYADVEGIARVVT 439

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGL 495
                     +  P  +   +++  L
Sbjct: 440 LEEIATNDYILNIPRYVEPRVEQEVL 465


>gi|186685409|ref|YP_001868605.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186467861|gb|ACC83662.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 684

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/720 (23%), Positives = 306/720 (42%), Gaps = 103/720 (14%)

Query: 10  SLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
              + IW  A+ L G   K +++   ++PF  L  +E  L      ++ +      + I 
Sbjct: 8   QYESNIWATADLLRGCGIKESEWPSYMMPFFALVMIESRLVRMFDELKAEIGEAALAEIA 67

Query: 69  LESFV-----KVAGYSFYNTSEY-SLSTLGSTNT--RNNLESYIASFSDNAKAIF----- 115
            E        K  GY+ Y   +  +L  +   +     + E+Y+  F    K +      
Sbjct: 68  PEDLTGLIEDKGQGYNVYIFEKNQTLKDICKNDKSFDVDFEAYLRGFDGETKDLLGVEAT 127

Query: 116 --EDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             E F D    I +L+   +L    K +S I+L P    +  ++ + EH+ RR+    ++
Sbjct: 128 EGEKFLDIKGVITKLKAKKVLLGYTKEWSSIDLKP--FDNSAITTLEEHIKRRWADISAD 185

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TP DV+ L   ++    +         +  +YD TCG G  L    + +     
Sbjct: 186 TAGEQYTPDDVIGLIAEIIASKIEES-----DKLLKIYDCTCGGGNLLFGVEDRI----- 235

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H +   +    GQ+     +A+            + R  +   I+ G+TL+ D F    F
Sbjct: 236 HQRFKRLTQTFGQDWNDALYALAK---------IESRFRVDSKIEHGNTLTDDKFYNDEF 286

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPP+G KW   +  +    +N +  RF   LP ISDG +LF+ HL +KL    N 
Sbjct: 287 DVVIANPPYGVKWNGYQKDI----ENDKTQRFKY-LPSISDGQLLFMQHLISKL----NA 337

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G   +V + S LF+G AGS ES IR+W+L++D +EA++ LPTD FF T I TYLW+L+ 
Sbjct: 338 NGMGVVVHNGSTLFSGDAGSAESNIRKWMLDSDFVEAVIQLPTDEFFNTGIYTYLWVLNK 397

Query: 413 RKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            K  + R KV LINA++ +  ++   G KR+ +++  R +I++      +  ++R+ D  
Sbjct: 398 HKLPQCRDKVMLINASEKFKPLKKSKGSKRKEVDEVSRLEIVETLTRFVDNDYARVFDKE 457

Query: 472 TFGYRRIKVL---------------RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            F + +  ++               +  ++S  L    L   E  +T   ++      + 
Sbjct: 458 FFYFNKQAIMLTNVDEQGKSFASRLKEGKISLKLSPLKLDNGERTLTEFTITNCDSQRFG 517

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR---ADP 573
            +++   Q I P+  +  + ++ +     K L  +             G+++        
Sbjct: 518 SLVEAFEQDIKPFVSSLDYKEQPLTVTTEKAL-YRFDADRETLIKEVLGKQEEALGCGKI 576

Query: 574 VTD---VNG------------EWIPDTNLTEYENVPY-------LESIQDYFVREVSPHV 611
           V       G            E  PD    +YE +P+        E+I+ +  +      
Sbjct: 577 VVKAAFKKGTKTQPEKIEITVELTPDYQ-KDYEIIPFHRDEVANQEAIEAFMAK------ 629

Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
              YI K F   ++     VG EINFN+ FY+ +  R +Q I  E+  +E ++  L E +
Sbjct: 630 ---YITKPFEYLEN----VVGVEINFNKVFYKPEKLRSVQKILGEITAIEKELKGLEEGL 682


>gi|313107803|ref|ZP_07793977.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042
           [Pseudomonas aeruginosa 39016]
 gi|310880479|gb|EFQ39073.1| LOW QUALITY PROTEIN: hypothetical protein PA39016_001140042
           [Pseudomonas aeruginosa 39016]
          Length = 1005

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/572 (21%), Positives = 219/572 (38%), Gaps = 48/572 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + + L + +W++A  L G     DF   I P    +R+    +     + ++  
Sbjct: 1   MSDQQITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEFQEIVDESG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +        ++  Y  +         +G+   +  +     +  D    +F D  +
Sbjct: 61  DEQLAWFPESHRFQIPDYCHWEQVREKSINVGA-ALQWAMREIERANPDTLYGVFGDAQW 119

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S+   RL    LL  + ++FS + L    V   ++ + YE+LI++F    ++ A +F TP
Sbjct: 120 SNK-DRLSDP-LLKDLIEHFSKLPLGNKNVSSDLLGDAYEYLIKKFADATNKKAGEFYTP 177

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L   +L           P    ++YDP CGTGG L  A+ HV +     K     
Sbjct: 178 RSVVRLMIDML----------DPKEGESIYDPACGTGGMLLAAVQHVKELHGDVK-RLWG 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE    T ++    + +  +E          I++G TL    F        F   +
Sbjct: 227 KLYGQEKNLTTSSIARMNLFLHGIE-------DFKIERGDTLRNPAFFDGDRLATFDCVI 279

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF       +   E    N   GR   GLP  S G   ++ H+   +       GR 
Sbjct: 280 ANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMAAVT---GRM 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL    LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + +L N K  
Sbjct: 332 AVVLPQGALFRKGV---EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACILVLRNCKPA 388

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML---DYRTF 473
           +   KV + +A+ L+      G+ +  +      +IL  Y    + + +  +   D    
Sbjct: 389 QFEKKVLIADASRLFRR----GRAQNFLEPKHAAEILGWYRGFTDVQDAVRVVSLDEIKA 444

Query: 474 GYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
               + + R    PL+         +A  +  +   + +    +  +     M   I+P 
Sbjct: 445 EDWTLNISRYVLPPLQEDIPPLPEAIATFKDALNRCREAEERLAQVMTAG-GMAAMIHPS 503

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
                   ES     A  L+          FI
Sbjct: 504 KRITQQELESYLWGAAVLLRGLIDAGDYKQFI 535



 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 122/545 (22%), Positives = 218/545 (40%), Gaps = 61/545 (11%)

Query: 7    SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
            +   L +++W  A  L G     D+ + I P    +R+    +    A      A   SN
Sbjct: 507  TQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQA------ALVDSN 560

Query: 67   IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLE---SYIASFSDNAKA-IFEDFDF 120
             DL        + F        + +  T  N    ++     I S + +    IF D  +
Sbjct: 561  GDLSYAQFAENHRFQIPEAAHWNDVRQTPRNVGAAIQRAMRAIESANPDMLDGIFGDAPW 620

Query: 121  SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            ++   RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T 
Sbjct: 621  TNR-DRLPD-ETLKNLIEHFSTKTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 678

Query: 181  RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            R VVHL T LL          +P +  ++YDPTCGTGG L  A++ V   G  ++     
Sbjct: 679  RTVVHLMTQLL----------APQVGESIYDPTCGTGGMLISALDEVKRSGGEYRTLK-- 726

Query: 241  VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCL 296
              +GQE    T ++    + +  +E          I +G TL+           +F   L
Sbjct: 727  -LYGQERNLITSSIARMNLFLHGVEDFE-------IVRGDTLADPKHIEDDRLRQFDVIL 778

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            +NPP+  K         +   + + GR   G P        F  H+   L    +  GR 
Sbjct: 779  ANPPYSIKQWN-----REAWSSDKWGRNSLGTPPQGRADYAFQQHILTSL----SAKGRC 829

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +KT 
Sbjct: 830  AVLWPHGVLFRNE----EQAMRAQMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRQKTS 885

Query: 417  ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
            +R GKV  I+A +  T  R     +  +  + +++IL  Y +  +   F+++      G 
Sbjct: 886  DRHGKVIFIDAVNEVTRERA----QSFLKTEHQQRILSAYQTFADVPGFAKVATLAEIGA 941

Query: 476  RRIKVLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                +  PL +          +    +    +W +     ++FW  +   +++ +     
Sbjct: 942  NAGNLSIPLYVKRVAAASASDSNGEAISLRTSWEQWQNDGRAFWQQM-DALVETLDSISK 1000

Query: 532  AESFV 536
            AE  V
Sbjct: 1001 AEDAV 1005


>gi|114778593|ref|ZP_01453420.1| Type I restriction-modification system M subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114551182|gb|EAU53742.1| Type I restriction-modification system M subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 572

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 197/471 (41%), Gaps = 51/471 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +F+W+ A+ L G+   ++F   I     L+RL  A E  +  V   YL+ G + 
Sbjct: 5   TLQQLESFLWETADILRGNMDASEFKDYIFGMLFLKRLSDAFEEEQEKVVAHYLSVGKTQ 64

Query: 67  IDLESF---VKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDF 118
              E           +F+       S L     +    L      I   +   + +    
Sbjct: 65  AQAEELAQDEDEYDNTFFVPERARWSYLKDLHHDIGAELNKATEAIEEANTTLEGVLVSI 124

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDF 177
           DF +   +L     L  +  ++S   L  +       +   YE+LI+ F     +   +F
Sbjct: 125 DF-NIKNKLSDKK-LRDLISHYSKYRLRNEDFEKPDLLGTAYEYLIKMFADSAGKKGGEF 182

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +VV L  +LL           P     +YDPT G+GG L    N++A  G   + P
Sbjct: 183 YTPSEVVRLLVSLL----------KPEAGMRVYDPTVGSGGMLIQTRNYLASHG---ENP 229

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293
             L  +GQE+   T A+C   M +  +        + +I++G TL             F 
Sbjct: 230 RDLALYGQEMNLNTWAICKMNMFLHGV-------FNADIRKGDTLRDPAHIQHGELMHFD 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF  K        + E  N   GRF  G P    G + F+ H+   L    N  
Sbjct: 283 RVIANPPFSLK-----KWGKDEADNDAYGRFPYGTPPKDAGDLAFVQHMIASL----NAE 333

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +V+    LF G   S E  IR+ +L++DL+EA++ LP+ LF+ T I   L I++ +
Sbjct: 334 GKMGVVMPHGVLFRG---SSEKAIRKGILQDDLLEAVIGLPSGLFYGTGIPACLLIINKQ 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           K +ER+GKV  INA   +      GK +  + D+   +I   + + E  K 
Sbjct: 391 KADERKGKVLFINAELEYEE----GKNQNKLRDEDIAKITATFENYEEIKR 437


>gi|30250441|ref|NP_842511.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30139282|emb|CAD86434.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 448

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/479 (23%), Positives = 196/479 (40%), Gaps = 52/479 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   + + L + +W++A  L G     DF   I P    +R+    +       E+Y 
Sbjct: 1   MSDQHITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQ 53

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114
                  D +       + F    +   + +   ++N    L+     I   + +    +
Sbjct: 54  EIVDETGDEQLAWFPESHRFQIPEDCHWNDVRTKASNVGTALQRAMREIEKANPDTLYGV 113

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A
Sbjct: 114 FGDAQWSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVSSDLLGDAYEYLIKKFADATNKKA 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     
Sbjct: 172 GEFYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEQHGDV 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
           K       +GQE    T ++    + +  +E          + +G TL    F       
Sbjct: 222 K-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVVRGDTLRNPAFFEVDRLA 273

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPPF       +   E    N   GR   GLP  S G   ++ H+   +    
Sbjct: 274 TFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADVI 328

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR A+VL    LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + + 
Sbjct: 329 ---GRMAVVLPQGALFRKGV---EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACIMVC 382

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           + RK  + + KV + +A+ L+      G+ +  +  +   +IL  Y    + + +    
Sbjct: 383 AKRKPAKHKNKVLIADASRLFRR----GRAQNHLEPEHATEILSWYRGFADVQDAVPWS 437


>gi|86145620|ref|ZP_01063950.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
 gi|85836591|gb|EAQ54717.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
          Length = 583

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 194/471 (41%), Gaps = 52/471 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    S   L +F+W+ A+ L G+   ++F   I     L+R+  A E  +  V   YL
Sbjct: 1   MTNK-LSLQQLESFLWETADILRGNMDASEFKDYIFGMMFLKRMSDAFEEEQEKVIAYYL 59

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAK 112
             G +    E           +FY       S L     N   +L      I   +   +
Sbjct: 60  GKGKTQEQAEELANDEDEYDDTFYMPESSRWSALKDLKHNIGESLNKATEAIEEHNSALE 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVS 171
            +    DF +   +L  A  L  +  +FS   L  +      M    YE+LI+ F     
Sbjct: 120 GVLVTIDF-NIKNKLTDAK-LRDLLSHFSQHRLRNEDFERPDMLGTAYEYLIKMFADSAG 177

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV L  ALL           P     +YDPT G+GG L    NH+A  G
Sbjct: 178 KKGGEFYTPSEVVQLLVALL----------KPHAGMRIYDPTTGSGGMLVQTRNHLAKNG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
            +      L   GQE+   T A+C   M +  +        S +I++G TL +       
Sbjct: 228 ENA---SNLSLFGQEMNLNTWAICKMNMFLHGV-------QSADIRKGDTLREPKHTEGG 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF  K        + E  +   GRF  G P    G + F+ H+     
Sbjct: 278 ELMSFDRVIANPPFSLK-----KWGKDECDSDGFGRFPYGTPPKDAGDLAFVQHMIAS-- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  G   +V+    LF G   S E  IR+ +LE+DL+EA++ LP+ LF+ T I   L
Sbjct: 331 --TNNEGMVGVVMPHGVLFRG---SSEKAIRQGILEDDLLEAVIGLPSGLFYGTGIPACL 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            I++  K+  R+GKV  IN+   +      GK +  + +    +I++ + +
Sbjct: 386 LIINKNKSAARKGKVLFINSELEFEE----GKNQNKLREQDITKIVETFEN 432


>gi|264677646|ref|YP_003277552.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208158|gb|ACY32256.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 448

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 142/448 (31%), Positives = 228/448 (50%), Gaps = 46/448 (10%)

Query: 132 LLYKICKNFSGIELHPDTVP-------------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +L+ + + F   E++                  +  M  ++E LIR+F  E +E A +  
Sbjct: 1   MLHDVIEKFVSDEINLSPNDRKGPDGRTQPGLSNLGMGYVFEELIRKFNEENNEEAGEHF 60

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L T L+  P             T+YDP CG+GG LT++ + + D     K   
Sbjct: 61  TPREVIKLMTNLVFIPVKDQL----PYPLTIYDPACGSGGMLTESQDFITDPEGEIKAKV 116

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +G+E+ PET+A+C + M+I+  +        +NI+ GSTL+ D F+G RF + L+N
Sbjct: 117 GVFLYGKEVNPETYAICKSDMMIKGNDP-------ENIKFGSTLATDDFSGTRFDFMLTN 169

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFG--------------PGLPKISDGSMLFLMHLAN 344
           PP+GK W+ D+ ++  E K+    RF               P +P+ SDG +LF+M +  
Sbjct: 170 PPYGKSWKSDQKSIV-EGKDVIDHRFQVNLSDYTEEDFDFYPAIPRSSDGQLLFMMEMVG 228

Query: 345 KLE--LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           K++       G R A V + S LF G AGSGES IRR ++END +EAI+ LP +LF+ T 
Sbjct: 229 KMKRRNDSPMGSRIASVHNGSALFTGDAGSGESNIRRHIIENDYLEAIIQLPNNLFYNTG 288

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSREN 461
           I TY+W+LSN K ++ +GK+QLI+A++L+  +R N G+K     D+   QI  +Y+   N
Sbjct: 289 ITTYVWVLSNNKADQCKGKMQLIDASNLYQKLRKNLGEKNCEFTDEHIHQITQLYLEMPN 348

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---- 517
              S++ + R FGY ++ + RPLR++       +A L      + +       + D    
Sbjct: 349 DGISKVFNNRDFGYYKVTIERPLRLAAQFSPERIATLRFTPGMQDIMEWVYDKYGDEVYT 408

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545
            LK   + I  +   E          E 
Sbjct: 409 SLKAHAEAIEAHLEREEITLSPKNRKEL 436


>gi|88809187|ref|ZP_01124696.1| Type I restriction-modification system M subunit [Synechococcus sp.
           WH 7805]
 gi|88787129|gb|EAR18287.1| Type I restriction-modification system M subunit [Synechococcus sp.
           WH 7805]
          Length = 627

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/480 (27%), Positives = 205/480 (42%), Gaps = 52/480 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + L +F+WK+A+ L G    ++F   I     L+RL  A E  R  V   YL  G S 
Sbjct: 60  TLSQLESFLWKSADILRGSMDASEFKDYIFGMLFLKRLSDAFEEAREGVIAYYLGKGKSQ 119

Query: 67  IDLESFVKVAGY---SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDF 118
            + E           +FY   +     L     +    L      I   +   + +    
Sbjct: 120 SEAEDLADDQDEYDKTFYVPEKARWQNLKDLKHDIGAELNKATEAIEEHNRTLEGVLVSI 179

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDF 177
           DF +   +L     L  +  ++S   L  +       +   YE+LI+ F     +   +F
Sbjct: 180 DF-NIKNKLNDRK-LRDLLSHYSTFRLRNEDFERDDLLGAAYEYLIKMFADSAGKKGGEF 237

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +VV L  ALL           P     +YDPTCG+GG L    N++A  G   + P
Sbjct: 238 YTPNEVVKLLVALL----------KPHAGMRVYDPTCGSGGMLIQTRNYLASHG---ENP 284

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293
             L   GQE+   T A+C   M +  +       +S +I++G TL            RF 
Sbjct: 285 ANLQLFGQEMNLSTWAICKLNMFLHGV-------ISADIRKGDTLGDPQHVENGEINRFD 337

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF  K            +N   GR+  G+P    G + F+ H+ + L       
Sbjct: 338 RVIANPPFSLKNWG-----RDLAENDGYGRYRYGVPPKDAGDLAFVQHMISSLNQE---- 388

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    LF G     E EIR+ +LE+DLIEA++ LP+ LF+ T I   L IL+  
Sbjct: 389 GVMGVVVPHGVLFRGGQ---EGEIRKGILEDDLIEAVIGLPSGLFYGTGIPAALLILNKT 445

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           K+ ER+GKV  INA   +      GK + I+ D+   +++  + S  + K FSR++    
Sbjct: 446 KSVERKGKVLFINAELDYQE----GKNQNILRDEDIEKVVGCFDSYNDIKRFSRVVPIEE 501


>gi|77920517|ref|YP_358332.1| type I restriction-modification system, M subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77546600|gb|ABA90162.1| type I restriction-modification system, M subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 504

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 124/532 (23%), Positives = 219/532 (41%), Gaps = 57/532 (10%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +SL+  +W+ A  L G     DF   I P    +RL    +   +A  E+      S+ D
Sbjct: 14  SSLSGHLWQAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYAAALEE------SDGD 67

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAIFEDFDFSS 122
           +E       + F              S N  + L+     I   + +    IF D  +++
Sbjct: 68  VEFAQFPENHRFQVPENCHWKDARAKSANIGHALQKAMRCIEQANPDTLHGIFGDAQWTN 127

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL  A LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F TPR 
Sbjct: 128 K-ERLSDA-LLKDLLEHFSSLNLGNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRS 185

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   +L          +P    T+YDP CGTGG L +A++HV + G   +   +   
Sbjct: 186 VVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEHGGD-EHLMLGKL 234

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSN 298
           +GQE    T ++    + +   E         +I++G TL    F    +   F   ++N
Sbjct: 235 YGQEKNLTTSSIARMNLFLHGAE-------DFHIERGDTLRLPAFYSGDSLATFDCVIAN 287

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K        +    N   GR   GLP    G   ++ H+   +       GR A+
Sbjct: 288 PPFSLK-----KWGDDAWTNDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARKTGRMAV 339

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF     S E +IR  LLE D++EA++ L  ++F+ T +A  + +  + K ++ 
Sbjct: 340 VLPHGVLFR---MSKEGKIRHKLLEMDILEAVIGLGKNIFYGTGLAPCVLVFRDSKPKDH 396

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRR 477
           R KV  I+A+  +      G+ +  +  +    I   Y   ++ +   R++         
Sbjct: 397 RQKVLFIDASKEF----KTGRAQNELLPEHVDNIHRWYEDYQDVEGICRVVTLDEIREND 452

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILKPMMQQIY 527
             +  P  +  ++++  +     D     L    Q+     D LK ++++  
Sbjct: 453 FNLTIPRYVEPVIEEESIT---IDRAIANLKEALQAACAAEDRLKALLEKEG 501


>gi|295696354|ref|YP_003589592.1| type I restriction-modification system, M subunit [Bacillus tusciae
           DSM 2912]
 gi|295411956|gb|ADG06448.1| type I restriction-modification system, M subunit [Bacillus tusciae
           DSM 2912]
          Length = 493

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 115/533 (21%), Positives = 216/533 (40%), Gaps = 57/533 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W++A  L G    +D+   I     L+RL          +  +Y    G  
Sbjct: 5   TLQQLESHLWESANILRGHIDSSDYKHYIFGMLFLKRLNDVFIEKAKEIEREYGQDYGWY 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAKAIFEDFDFS 121
              E       + F+   E   S L   + +    +      +   +   + +    DF+
Sbjct: 65  DRDE-------HQFFVPEEARWSYLYSKTQDIGTAINHAFELLEDENPQLQGVLRSIDFN 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               RL  A +  ++ ++FS I+L    + +  ++   YE+LI+ F  +  +   +F TP
Sbjct: 118 DK-ERLPDATI-SRLMQHFSEIDLSNANLSEPDILGRAYEYLIKMFADDAGKKGGEFYTP 175

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             VV L   L+           P     + DPT G+GG L  +++++   G +   P  +
Sbjct: 176 SKVVELIVKLI----------KPQEGMRICDPTAGSGGMLIQSVDYIKAAGGN---PQNV 222

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             HGQE    T A+C   +L+  L           I++G TL             +   +
Sbjct: 223 TLHGQEKNLNTWAICKMNLLLHGL-------SDHRIEKGDTLRDPKLVQDGELILYDRVI 275

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K         +E +    GRF  GLP    G + F+ H+   L       G+A
Sbjct: 276 ANPPFSLKGWG-----REEAEADPYGRFRFGLPPKDKGDLAFVQHMIATLNHE----GKA 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G A   E +IR+ +L  DL+EA++ LP +LF+ T I   + + S  K  
Sbjct: 327 GVVMPHGVLFRGGA---EEQIRKGILGEDLLEAVIGLPANLFYGTGIPACILMFSRSKEP 383

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGY 475
            +RGKV  +N  + +      GK +  + D+  R+I+  Y + ++  K+ R++D      
Sbjct: 384 HKRGKVFFLNGANDYQE----GKNQNFLRDEDIRKIVSAYDTWQDVDKYCRVVDLDEIRK 439

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               +     +    ++  +  +   I   +     +    +++   ++++  
Sbjct: 440 NEYNLNIARYIDSTDEEEQID-VAEAIAELRRLEEERRQIEEVMNGYLRELGY 491


>gi|262196002|ref|YP_003267211.1| type I restriction-modification system, M subunit [Haliangium
           ochraceum DSM 14365]
 gi|262079349|gb|ACY15318.1| type I restriction-modification system, M subunit [Haliangium
           ochraceum DSM 14365]
          Length = 633

 Score =  366 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 122/534 (22%), Positives = 208/534 (38%), Gaps = 56/534 (10%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             + A L  ++W  A+ L G    +D+   I     L+RL    E     +  + L    
Sbjct: 137 QLTTAQLERYLWAAADILRGQIDSSDYKNYIFGLLFLKRLSDVFEEEAEKLTAEGLPAAV 196

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAKAIFEDFD 119
           +  D +       + F+       S +   +T     L    + +   +     + E  D
Sbjct: 197 AWNDPDE------HQFFVPERARWSEIAKVATGIGEALNVACAALEEANSGLDGVLEGID 250

Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAE 175
           F+          +  +L ++ ++F  + L    + +  M    YE+LI +F  +  +   
Sbjct: 251 FNDERRLGNTKNRDAVLARLVQHFGQLSLKNADLSEPDMLGRAYEYLIEKFADDAGKKGG 310

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV L   LL          +P     + DPTCG+GG L +  ++V   G +  
Sbjct: 311 EFYTPRKVVQLIVELL----------APTAGMRISDPTCGSGGMLIECAHYVERQGGN-- 358

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----R 291
            P  L  HGQE    T A+C   ML+  L        S  I++G T+             
Sbjct: 359 -PRNLTLHGQEKNLGTWAICKMNMLLHGL-------PSARIEKGDTIRDPRLLDNGALLV 410

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   ++NPPF       + A    H     GRF  GLP  + G + FL H+   L    N
Sbjct: 411 YDRVIANPPFSLDEWGVEVAEGDGH-----GRFRFGLPPKTKGDLAFLQHMVATL----N 461

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGR  +V+    LF G   S E  IR  LL  DL EA++ L  +LF+ T I   + +LS
Sbjct: 462 EGGRLGVVMPHGVLFRG---SSEGRIRSKLLAEDLFEAVIGLAPNLFYGTGIPAAVLVLS 518

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
             K   R+GKV  ++A+  + +    G  +  + D    +I   +    + + F+R++  
Sbjct: 519 RDKARARKGKVLFVDASSEFEA----GSAQNYLRDVHVTKIARAFHEYRDVERFARVVPL 574

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                    +     +    ++  +    A    R+L          + + + +
Sbjct: 575 AEIEQNEGNLNISRYVDTSQEEERIDVAAAVARLRELEAARDEAEATMHRFLEE 628


>gi|145631521|ref|ZP_01787289.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982866|gb|EDJ90383.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 483

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 133/490 (27%), Positives = 201/490 (41%), Gaps = 121/490 (24%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GLPKISDGSMLFLMH 341
            LSNPP+GK W KD+  ++  ++     RF                 P+ SDG +LFLM 
Sbjct: 1   MLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDATPRSSDGQLLFLME 59

Query: 342 LANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           + NK++ P N   G R A V + S LF G AGSGES IRR ++E DL+EAIV LP +LF+
Sbjct: 60  MVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIEKDLLEAIVQLPNNLFY 119

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVS 458
            T I TY+W+LSN K E R+GKVQLI+A  L+  +R N G K      +   +I   Y+ 
Sbjct: 120 NTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRKLRKNLGDKNCEFAPEHIAEITQNYLD 179

Query: 459 REN------------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW-- 504
                          G  S++ D + FGY ++ + RP R S       +A L  D     
Sbjct: 180 FTAKAREIDSQNEAVGLASQIFDNQDFGYYKVTIERPDRRSAQFTAENIAPLRFDKALFE 239

Query: 505 ----------------------------------------RKLSPLHQSFWLDILK---- 520
                                                    K   L    W         
Sbjct: 240 PMQYLYQQHGGQVYNAGFLAQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAALFQT 299

Query: 521 --PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT--- 575
              +++      + +    +       K  K+  S +   A  NA    D  A  V    
Sbjct: 300 ASTLLEHFGEQQFDDFNQFKQAVECRLKAEKIPLSATEKKAVFNAVSWYDENAAKVIAKT 359

Query: 576 ------------------------------DVNGE---WIPDTNLTEYENVPYLESIQDY 602
                                            GE   +   ++L + E++P  ++I DY
Sbjct: 360 LKLKPNELDALCRRYQCQADELADFGYYATGKAGEYLQYETSSDLRDSESIPLKQNIHDY 419

Query: 603 FVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEA 662
           F  EV PH+ +A+++         E  ++GYEI+FN++FY+++P R L D+  ++  +E 
Sbjct: 420 FKAEVQPHISEAWLN--------MESVKIGYEISFNKYFYRHKPLRSLADVAQDILALEK 471

Query: 663 QIATLLEEMA 672
           Q   L+ E+ 
Sbjct: 472 QTDGLISEIL 481


>gi|189423917|ref|YP_001951094.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420176|gb|ACD94574.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 496

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 129/533 (24%), Positives = 210/533 (39%), Gaps = 59/533 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + L N +W++A  L G     DF   I P    +R+    +     + E+         
Sbjct: 6   LSQLENHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWDEEYQEIAEEMG------- 58

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDN-AKAIFEDFDFS 121
           D E  +    + F          +  T  N  N L+     I   + +   A+F D  ++
Sbjct: 59  DPELAMFPESHRFQVPEGCHWRDIRETPVNVGNALQRALREIEKANPDTLYAVFGDAQWT 118

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL  A LL  + ++FS + L    V   V+ + YE+LI++F    ++ A +F TPR
Sbjct: 119 NK-DRLTDA-LLKDLIEHFSRLPLGNRNVASDVLGDAYEYLIKKFADATNKKAGEFYTPR 176

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L   +L           P    ++YDP CGTGG L  A+ HV +     K      
Sbjct: 177 SVVRLMVDML----------DPKEGDSIYDPACGTGGMLLAALQHVHELHGDTK-LLWGK 225

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
             GQE    T A+    + +  +E          I +G TL    F        F   ++
Sbjct: 226 LFGQEKNLTTSAIARMNLFLHGIE-------DFQIVRGDTLRNPAFFEGDRLATFDCVIA 278

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  +   ++  +     N   GR   GLP  S G   ++ H+   +       GR A
Sbjct: 279 NPPFSLEKWGEEVWL-----NDPFGRNFAGLPPSSSGDFAWVQHMVKSMAEVT---GRMA 330

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF       E EIRR LLE DLIE ++ L  +LF+ T +A  + +L  RK  E
Sbjct: 331 VVLPQGALFRKGV---EGEIRRKLLEMDLIEGVIGLAPNLFYGTGLAACILLLRKRKPAE 387

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTFGYR 476
           R+ KV + +A+ L+      G+ +  +  +   +IL  Y +  +     R++        
Sbjct: 388 RKRKVMIADASSLFRR----GRAQNYLEPEHGAEILGWYQAFIDVQDRVRIVSTDEIKAE 443

Query: 477 RIK------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                    VL PL          +A  ++ +   + +       +     + 
Sbjct: 444 DWTLNISRYVLPPLNDDIPPLPQAIAEFKSALERCREAETRLEQLMTDGGWLQ 496


>gi|300118615|ref|ZP_07056353.1| type I restriction modification system, methyltransferase subunit
           [Bacillus cereus SJ1]
 gi|298724004|gb|EFI64708.1| type I restriction modification system, methyltransferase subunit
           [Bacillus cereus SJ1]
          Length = 493

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 113/501 (22%), Positives = 211/501 (42%), Gaps = 56/501 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W++A  + G    +D+   I     L+RL      T   + E+     G  
Sbjct: 5   TLQQLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVETAKRIEEEEQDDYGWY 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDN---AKAIFEDFDFS 121
              E       + F+         +   + +  + +        +     + +  + DF+
Sbjct: 65  DRDE-------HQFFVPEGVRWEDIRSKTQDIGDAINKAFEKLEEENISLQGVLANIDFN 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180
               +L  + LL ++ ++FS I+L   ++ +  M    YE+LI++F  +  +   +F TP
Sbjct: 118 DK-EKLPDS-LLLQLIQHFSKIDLSNASLSEPDMLGRAYEYLIKQFADDAGKKGGEFYTP 175

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +VV L   L+           P     + DPT G+GG L  +++++         P  L
Sbjct: 176 SEVVELIVKLI----------KPEEGMRVCDPTAGSGGMLIQSVDYIK---GKGGNPRNL 222

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCL 296
           V HGQE    T A+C   +L+  L           I++G T+ +     +     +   +
Sbjct: 223 VLHGQERNLNTWAICKMNLLLHGL-------SDHRIEKGDTIREPKLLEEGELILYDRVI 275

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K         +E ++ E GRF  GLP  + G   F+ H+   L       G+A
Sbjct: 276 ANPPFSLKNWG-----REEAESDEYGRFRFGLPPKTAGDYGFIQHMIATLNHE----GKA 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G A   E  IR+ L+E DLIEA++ LP++LF+ T I   + IL+  K+E
Sbjct: 327 GVVMPHGVLFRGGA---EGAIRKGLIEEDLIEAVIGLPSNLFYGTGIPACILILNRNKSE 383

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
           ER+ K+  ++ +  +      GK +  + D    ++++ Y   E  + + R +     G 
Sbjct: 384 ERKNKIFFLDGSQDYQE----GKNQNTLRDKDIEKVVEAYDKNEEEEKYCRPVGIEEIGE 439

Query: 476 RRIKVLRPLRMSFILDKTGLA 496
               +     +    ++  + 
Sbjct: 440 NDYNLNIARYIDTTEEEEKID 460


>gi|254190414|ref|ZP_04896922.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938090|gb|EDO93760.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 500

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 124/523 (23%), Positives = 210/523 (40%), Gaps = 59/523 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T +   L + +W++A  L G     DF   I P    +R+    +       E+Y     
Sbjct: 7   TVTLGQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQEIVD 59

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAIFEDF 118
              D +       + F    +   + +   ++N    L+     I   + +    +F D 
Sbjct: 60  ETGDEQLAWFPESHRFQIPEDCHWNDVRSKASNVGAALQRAMREIEKANPDTLYGVFGDA 119

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +S+   RL  A LL  + ++FS + L  D V   V+ + YE+LI++F    ++ A +F 
Sbjct: 120 QWSNK-ERLSDA-LLKDLIEHFSVLPLGNDNVNSDVLGDAYEYLIKKFADATNKKAGEFY 177

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     K   
Sbjct: 178 TPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEMHGDVK-RL 226

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294
               +GQE    T ++    + +  +E          + +G TL    F        F  
Sbjct: 227 WGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVLRGDTLRNPAFFEGDWLATFDC 279

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF       +   E    N   GR   GLP  S G   ++ H+   +       G
Sbjct: 280 VIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMADLT---G 331

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+VL    LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + +L  RK
Sbjct: 332 RMAVVLPQGALFRKGV---EGSIRQKLLELDLVEAVIGLGPNLFYGTGLAACILVLRKRK 388

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML---DYR 471
             + + KV + +A+ L+      G+ +  +  +   +IL  Y    + + +  +   D  
Sbjct: 389 PAKHKKKVLIADASRLFRR----GRAQNYLEPEHAAEILGWYRGFADVQDAVRVVSLDEI 444

Query: 472 TFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPL 510
                 + + R    PL+         +A  +  +T  + +  
Sbjct: 445 KAEDWTLNISRYVLPPLQEDVPPLPEAIAAFKDALTHCREAEE 487


>gi|220931289|ref|YP_002508197.1| type I restriction-modification system, M subunit [Halothermothrix
           orenii H 168]
 gi|219992599|gb|ACL69202.1| type I restriction-modification system, M subunit [Halothermothrix
           orenii H 168]
          Length = 495

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 117/516 (22%), Positives = 216/516 (41%), Gaps = 49/516 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T +   L + +W++A  L G    +D+   I     L+R+    +     ++ +  
Sbjct: 1   MSQETLTLDKLESHLWESANILRGSIDSSDYKNYIFGMLFLKRISDVFDEECEKMKAEGK 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                + D   F       + + S+ +      ++     E  +   +   + +    DF
Sbjct: 61  EAFIDDPDFHDFFVPKRARWEHISKVT--QDIGSHINKAFE-VLEEHNKMLEGVLAPIDF 117

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +    RL    +L ++ ++FS   L   D     ++   YE+LIR+F  +  +   +F T
Sbjct: 118 NDK-ERLPDH-VLEELIQHFSKYSLKNRDLEDPDILGRAYEYLIRQFADDAGKKGGEFYT 175

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   +L           P    ++YDP CG+GG L  +  H+ + G+       
Sbjct: 176 PRQVVKLLVEIL----------DPRPGMSVYDPCCGSGGMLIYSAEHLIEEGNDI---SE 222

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
           +  +GQE    T A+C   ML+  L           I +G T+    F       +F   
Sbjct: 223 ISLYGQERNLNTWAICKMNMLLHGL-------YDAKIAKGDTMRDPQFLDNGKLDQFDRV 275

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NP + +     K   E E      GRF  G P  +    +++ H+        N  G+
Sbjct: 276 IANPMWNQSSWSKKYLQETE----PFGRFSYGFPPKNSADWVWIQHMLAS----ANKKGK 327

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL +  LF G     E +IR+ +L++DLIEA++ALP++LF+ T+    + IL+  KT
Sbjct: 328 IGVVLDNGVLFRG---RSEGKIRKKVLKHDLIEAVIALPSNLFYNTSSPGCILILNKDKT 384

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFG 474
            ER+ KV  I A + +     EG  +  + +    +IL+ Y + E+ + + R++D     
Sbjct: 385 VERKNKVIFIYAEEDY----KEGSNQNYLREKDIEKILNAYKNFEDIERYCRVVDMEEIE 440

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
                +  P    ++        ++       L+ L
Sbjct: 441 RNDYNLNVP---RYVDTTEPEEPIDVQEVIDNLNKL 473


>gi|229164778|ref|ZP_04292610.1| Type I restriction-modification system, M subunit [Bacillus cereus
           R309803]
 gi|228618681|gb|EEK75675.1| Type I restriction-modification system, M subunit [Bacillus cereus
           R309803]
          Length = 493

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 112/519 (21%), Positives = 211/519 (40%), Gaps = 58/519 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W++A  + G    +D+   I     L+RL      T               
Sbjct: 5   TLQQLESHLWESANIMRGSIDSSDYKNYIFGLLFLKRLNDVFVET-------AKRIEVEE 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            D   +     + F+         +               E  +   + + + +  + DF
Sbjct: 58  QDDYGWYDRDEHQFFVPEGARWEDIHSKTQDIGDAINKAFEK-LEEENVSLQGVLANIDF 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
           +    +L    LL ++ ++FS I+L    + +  M    YE+LI++F  +  +   +F T
Sbjct: 117 NDK-EKLPD-NLLLQLIQHFSKIDLSNANLSEPDMLGRAYEYLIKQFADDSGKKGGEFYT 174

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  VV L   L+           P     + DPT G+GG L  +++++ + G +   P  
Sbjct: 175 PSKVVELIVKLI----------KPEEGMRVCDPTAGSGGMLIQSVDYIKEKGGN---PRN 221

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYC 295
           LV HGQE    T A+C   +L+  L           I++G T+ +     +     +   
Sbjct: 222 LVLHGQERNLNTWAICKMNLLLHGL-------SDHRIEKGDTIREPKLLEEGELVLYDRV 274

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K         +E ++ + GRF  GLP  + G   F+ H+   L       G+
Sbjct: 275 IANPPFSLKNWG-----REEAESDQYGRFRFGLPPKTAGDYGFIQHMIATLNHE----GK 325

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A +V+    LF G A   E  IR+ ++E DLIEA++ LP++LF+ T I   + +L+  K+
Sbjct: 326 AGVVMPHGVLFRGAA---EGTIRKRIIEEDLIEAVIGLPSNLFYGTGIPACILLLNRNKS 382

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFG 474
           EER+ K+  ++ +  +      GK +  + D   +++ + Y   E  + + R +      
Sbjct: 383 EERKNKIFFLDGSQDYQE----GKNQNTLRDQDIKKVTEAYDKYEEIEKYCRPVSIEEVR 438

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                +     +    ++  +    A    +KL    + 
Sbjct: 439 ENDYNLNIARYIDITEEEEQIDVAAALAELQKLENARKE 477


>gi|302343962|ref|YP_003808491.1| type I restriction-modification system, M subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301640575|gb|ADK85897.1| type I restriction-modification system, M subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 505

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 122/535 (22%), Positives = 217/535 (40%), Gaps = 62/535 (11%)

Query: 1   MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M+   G+         +L+  +W+ A  L G     DF   I P    +RL    +   +
Sbjct: 1   MSRKNGNNNSVDLDIGTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYA 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFS 108
              E+      S+ D E       + F          +   S N  + L+     I   +
Sbjct: 61  VALEE------SDGDAEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQAN 114

Query: 109 DN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            +    IF D  +++   RL  A LL  + ++FS + L  +     ++   YE+LI++F 
Sbjct: 115 PDTLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFA 172

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++ A +F TPR VV L   +L          +P    T+YDP CGTGG L +A++HV
Sbjct: 173 DLTNKKAGEFYTPRSVVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHV 222

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            + G   +   +   +GQE    T ++    + +   E         +I++G TL    F
Sbjct: 223 KEHGGD-ENLMLGKLYGQEKNLTTSSIARMNLFLHGAE-------DFHIERGDTLRLPAF 274

Query: 288 ----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               +   F   ++NPPF  +   D   +     N   GR   GLP    G   ++ H+ 
Sbjct: 275 YSGDSLATFDCVIANPPFSLEKWGDDVWI-----NDPYGRNFAGLPPAKSGDFAWVQHMV 329

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             +       GR A+VL    LF     S E EIRR LLE D++EA++ +  ++F+ T +
Sbjct: 330 KSM---ARKTGRMAVVLPHGVLFR---MSKEGEIRRKLLEMDILEAVIGVGQNIFYGTGL 383

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           A  + +  + K +  R KV  I+A+  +      G+ +  +  +   +I   Y   ++ +
Sbjct: 384 APCVLVFRDSKPKAHRQKVLFIDASKEF----KTGRAQNELLPEHVDKIHRWYEGYQDVE 439

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
              R++           +  P  +  ++++     +  D     L    Q+ +  
Sbjct: 440 GVCRVVTLDEIRENDFNLNIPRYVEPVIEEE---SMTIDQAIANLKESLQAAYAA 491


>gi|237816883|ref|ZP_04595875.1| type I restriction-modification system, M subunit [Brucella abortus
           str. 2308 A]
 gi|237787696|gb|EEP61912.1| type I restriction-modification system, M subunit [Brucella abortus
           str. 2308 A]
          Length = 523

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 16  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 74  PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 126

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 127 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 185

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 186 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 235

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 236 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 288

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 289 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 347

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 348 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 400

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 401 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 456

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 457 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 515

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 516 LKEMGYVG 523


>gi|148558226|ref|YP_001257779.1| type I restriction-modification system, M subunit [Brucella ovis
           ATCC 25840]
 gi|148369511|gb|ABQ62383.1| type I restriction-modification system, M subunit [Brucella ovis
           ATCC 25840]
          Length = 523

 Score =  360 bits (925), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 125/548 (22%), Positives = 226/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 16  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 74  PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 126

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 127 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 185

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP+ VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 186 AGKKGGEFYTPQHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 235

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 236 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 288

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 289 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 347

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 348 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 400

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 401 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 456

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 457 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 515

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 516 LKEMGYVG 523


>gi|312879435|ref|ZP_07739235.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310782726|gb|EFQ23124.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 506

 Score =  360 bits (924), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 126/532 (23%), Positives = 220/532 (41%), Gaps = 53/532 (9%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L  ++W  A  L G     DF   I P    +RL    +       E  +A   S+ D+
Sbjct: 17  TLFGYLWDAANILRGSVDAADFKTYIFPLLFFKRLSDVYDE------EYAVALDESDGDV 70

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDN-AKAIFEDFDFSST 123
           E       + F    +     + +T  +  + L+     I   + +    IF D  +++ 
Sbjct: 71  EFAQFAENHRFQVPEDCHWKDVRATIAHIGHALQKAMRCIEQANPDTLHGIFGDAQWTNK 130

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             RL    LL  + ++FS + L  +     ++   YE+LI++F    ++ A +F TPR V
Sbjct: 131 -DRLSDV-LLKDLIEHFSSLNLSNEHCKADILGQAYEYLIKKFADLTNKKAGEFYTPRSV 188

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L   +L          +P    T+YDP CGTGG L +A++HV + G   +   +   +
Sbjct: 189 VALLVRIL----------APKAGETIYDPACGTGGMLLEALHHVKEQGGD-ENLMLGKLY 237

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNP 299
           GQE    T A+    + +   E         ++Q+G TL    F        F   ++NP
Sbjct: 238 GQEKNLTTSAIARMNLFLHGAE-------DFHVQRGDTLRVPAFYSGDNLATFDCVIANP 290

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K   D   +     N   GR   GLP    G   ++ H+   +       GR A+V
Sbjct: 291 PFSLKKWGDDVWI-----NDPYGRNFAGLPPAKSGDFAWVQHMVKSM---ARRTGRMAVV 342

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF     S E EIRR LLE D++EA++ L  ++F+ T +A  + +  +RK E  R
Sbjct: 343 VPQGVLFR---MSKEGEIRRKLLEMDILEAVIGLGQNIFYGTGLAPCVLVFRDRKPEAHR 399

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRI 478
            KV  I+A+  +      G+ +  +  +   +I   Y   ++ +   R++          
Sbjct: 400 WKVLFIDASKEF----KTGRAQNELLPEHVDRIHRWYEGYQDVEGICRVVTQGEIRENDF 455

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
            +  P  +  ++++  +  +       K S        D LK ++++    G
Sbjct: 456 NLNIPRYVEPVIEEESM-TIHQATANLKESLQAAYAAEDRLKALLEKEGLMG 506


>gi|225629306|ref|ZP_03787339.1| type I restriction-modification system, M subunit [Brucella ceti
           str. Cudo]
 gi|225615802|gb|EEH12851.1| type I restriction-modification system, M subunit [Brucella ceti
           str. Cudo]
          Length = 523

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 16  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 73

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 74  PENVAYSDPDE-------HEFFLVKRARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 126

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 127 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 185

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 186 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 235

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 236 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 288

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 289 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 347

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 348 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 400

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 401 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 456

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 457 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 515

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 516 LKEMGYVG 523


>gi|17988796|ref|NP_541429.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. 16M]
 gi|297249369|ref|ZP_06933070.1| type I restriction-modification system, M subunit [Brucella abortus
           bv. 5 str. B3196]
 gi|17984614|gb|AAL53693.1| type i restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. 16M]
 gi|297173238|gb|EFH32602.1| type I restriction-modification system, M subunit [Brucella abortus
           bv. 5 str. B3196]
          Length = 518

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 11  MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 68

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 69  PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 121

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 122 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 181 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 230

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 231 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 283

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 284 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 342

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 343 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 396 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 451

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 452 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 510

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 511 LKEMGYVG 518


>gi|163844960|ref|YP_001622615.1| type I restriction-modification system, M subunit [Brucella suis
           ATCC 23445]
 gi|163675683|gb|ABY39793.1| type I restriction-modification system, M subunit [Brucella suis
           ATCC 23445]
          Length = 508

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 126/548 (22%), Positives = 226/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 59  PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L    N  G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 333 ATL----NAKGVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 501 LKEMGYVG 508


>gi|23500570|ref|NP_700010.1| type I restriction-modification system, M subunit [Brucella suis
           1330]
 gi|62317328|ref|YP_223181.1| HsdM restriction-modification system, M subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|83269309|ref|YP_418600.1| N-6 adenine-specific DNA methylase [Brucella melitensis biovar
           Abortus 2308]
 gi|161620897|ref|YP_001594783.1| type I restriction-modification system, M subunit [Brucella canis
           ATCC 23365]
 gi|189022583|ref|YP_001932324.1| type I restriction-modification system, M subunit [Brucella abortus
           S19]
 gi|225686602|ref|YP_002734574.1| type I restriction-modification system, M subunit [Brucella
           melitensis ATCC 23457]
 gi|254690828|ref|ZP_05154082.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 6 str. 870]
 gi|254695864|ref|ZP_05157692.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 3 str. Tulya]
 gi|254698609|ref|ZP_05160437.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254700051|ref|ZP_05161879.1| type I restriction-modification system methylation subunit
           [Brucella suis bv. 5 str. 513]
 gi|254703171|ref|ZP_05164999.1| type I restriction-modification system methylation subunit
           [Brucella suis bv. 3 str. 686]
 gi|254705683|ref|ZP_05167511.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis M163/99/10]
 gi|254710914|ref|ZP_05172725.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis B2/94]
 gi|254732056|ref|ZP_05190634.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 4 str. 292]
 gi|256015604|ref|YP_003105613.1| type I restriction-modification system, M subunit [Brucella microti
           CCM 4915]
 gi|256029298|ref|ZP_05442912.1| type I restriction-modification system methylation subunit
           [Brucella pinnipedialis M292/94/1]
 gi|256043713|ref|ZP_05446636.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256058986|ref|ZP_05449197.1| type I restriction-modification system methylation subunit
           [Brucella neotomae 5K33]
 gi|256111244|ref|ZP_05452275.1| type I restriction-modification system methylation subunit
           [Brucella melitensis bv. 3 str. Ether]
 gi|256157493|ref|ZP_05455411.1| type I restriction-modification system methylation subunit
           [Brucella ceti M490/95/1]
 gi|256253530|ref|ZP_05459066.1| type I restriction-modification system methylation subunit
           [Brucella ceti B1/94]
 gi|256256010|ref|ZP_05461546.1| type I restriction-modification system methylation subunit
           [Brucella abortus bv. 9 str. C68]
 gi|256262259|ref|ZP_05464791.1| type I restriction-modification system protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260544565|ref|ZP_05820386.1| type I restriction-modification system protein [Brucella abortus
           NCTC 8038]
 gi|260564900|ref|ZP_05835385.1| type I restriction-modification system protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260567901|ref|ZP_05838370.1| type I restriction-modification system protein [Brucella suis bv. 4
           str. 40]
 gi|260756406|ref|ZP_05868754.1| type I restriction modification system protein [Brucella abortus
           bv. 6 str. 870]
 gi|260759838|ref|ZP_05872186.1| type I restriction modification system protein [Brucella abortus
           bv. 4 str. 292]
 gi|260763077|ref|ZP_05875409.1| type I restriction modification system protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260882230|ref|ZP_05893844.1| type I restriction modification system protein [Brucella abortus
           bv. 9 str. C68]
 gi|261216284|ref|ZP_05930565.1| type I restriction modification system protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|261220660|ref|ZP_05934941.1| type I restriction modification system protein [Brucella ceti
           B1/94]
 gi|261313103|ref|ZP_05952300.1| type I restriction modification system protein [Brucella
           pinnipedialis M163/99/10]
 gi|261318497|ref|ZP_05957694.1| type I restriction modification system protein [Brucella
           pinnipedialis B2/94]
 gi|261322930|ref|ZP_05962127.1| type I restriction modification system protein [Brucella neotomae
           5K33]
 gi|261750534|ref|ZP_05994243.1| type I restriction modification system protein [Brucella suis bv. 5
           str. 513]
 gi|261753793|ref|ZP_05997502.1| type I restriction modification system protein [Brucella suis bv. 3
           str. 686]
 gi|265986295|ref|ZP_06098852.1| type I restriction modification system protein [Brucella
           pinnipedialis M292/94/1]
 gi|265990135|ref|ZP_06102692.1| type I restriction modification system protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265992757|ref|ZP_06105314.1| type I restriction modification system protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|265995990|ref|ZP_06108547.1| type I restriction modification system protein [Brucella ceti
           M490/95/1]
 gi|294853394|ref|ZP_06794066.1| type I restriction-modification system protein [Brucella sp. NVSL
           07-0026]
 gi|23464207|gb|AAN34015.1| type I restriction-modification system, M subunit [Brucella suis
           1330]
 gi|62197521|gb|AAX75820.1| HsdM, type I restriction-modification system, M subunit [Brucella
           abortus bv. 1 str. 9-941]
 gi|82939583|emb|CAJ12563.1| N-6 Adenine-specific DNA methylase:N6 adenine-specific DNA
           methyltransferase, N12 class:N-6 DNA methylase:Type I
           restriction- [Brucella melitensis biovar Abortus 2308]
 gi|161337708|gb|ABX64012.1| type I restriction-modification system, M subunit [Brucella canis
           ATCC 23365]
 gi|189021157|gb|ACD73878.1| type I restriction-modification system, M subunit [Brucella abortus
           S19]
 gi|225642707|gb|ACO02620.1| type I restriction-modification system, M subunit [Brucella
           melitensis ATCC 23457]
 gi|255998264|gb|ACU49951.1| type I restriction-modification system, M subunit [Brucella microti
           CCM 4915]
 gi|260097836|gb|EEW81710.1| type I restriction-modification system protein [Brucella abortus
           NCTC 8038]
 gi|260152543|gb|EEW87636.1| type I restriction-modification system protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260154566|gb|EEW89647.1| type I restriction-modification system protein [Brucella suis bv. 4
           str. 40]
 gi|260670156|gb|EEX57096.1| type I restriction modification system protein [Brucella abortus
           bv. 4 str. 292]
 gi|260673498|gb|EEX60319.1| type I restriction modification system protein [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260676514|gb|EEX63335.1| type I restriction modification system protein [Brucella abortus
           bv. 6 str. 870]
 gi|260871758|gb|EEX78827.1| type I restriction modification system protein [Brucella abortus
           bv. 9 str. C68]
 gi|260917891|gb|EEX84752.1| type I restriction modification system protein [Brucella abortus
           bv. 3 str. Tulya]
 gi|260919244|gb|EEX85897.1| type I restriction modification system protein [Brucella ceti
           B1/94]
 gi|261297720|gb|EEY01217.1| type I restriction modification system protein [Brucella
           pinnipedialis B2/94]
 gi|261298910|gb|EEY02407.1| type I restriction modification system protein [Brucella neotomae
           5K33]
 gi|261302129|gb|EEY05626.1| type I restriction modification system protein [Brucella
           pinnipedialis M163/99/10]
 gi|261740287|gb|EEY28213.1| type I restriction modification system protein [Brucella suis bv. 5
           str. 513]
 gi|261743546|gb|EEY31472.1| type I restriction modification system protein [Brucella suis bv. 3
           str. 686]
 gi|262550287|gb|EEZ06448.1| type I restriction modification system protein [Brucella ceti
           M490/95/1]
 gi|262763627|gb|EEZ09659.1| type I restriction modification system protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|263000804|gb|EEZ13494.1| type I restriction modification system protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263091975|gb|EEZ16281.1| type I restriction-modification system protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|264658492|gb|EEZ28753.1| type I restriction modification system protein [Brucella
           pinnipedialis M292/94/1]
 gi|294819049|gb|EFG36049.1| type I restriction-modification system protein [Brucella sp. NVSL
           07-0026]
 gi|326410992|gb|ADZ68056.1| type I restriction-modification system, M subunit [Brucella
           melitensis M28]
 gi|326554283|gb|ADZ88922.1| type I restriction-modification system, M subunit [Brucella
           melitensis M5-90]
          Length = 508

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 59  PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 333 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 501 LKEMGYVG 508


>gi|187930245|ref|YP_001900732.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|187727135|gb|ACD28300.1| N-6 DNA methylase [Ralstonia pickettii 12J]
          Length = 498

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 123/527 (23%), Positives = 211/527 (40%), Gaps = 59/527 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    + + L   +W++A  L G     DF   I P    +R+    +       E+Y 
Sbjct: 1   MSNPQITLSQLEGHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EEYQ 53

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AKAI 114
                  D E       + F    +   + +   ++N    L+     I   + +    +
Sbjct: 54  EIVDETGDEELAWFPESHRFQIPEDCHWNDVRAKASNVGTALQRAMREIERANPDTLYGV 113

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++ A
Sbjct: 114 FGDAQWSNK-ERLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNKKA 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +     
Sbjct: 172 GEFYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEMHGDV 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
           K       +GQE    T ++    + +  +E          + +G TL    F       
Sbjct: 222 K-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVVRGDTLRNPAFFEGDRLA 273

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPPF       +   E    N   GR   GLP  S G   ++ H+   +    
Sbjct: 274 TFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSM---A 325

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  GR A+VL    LF       E  IR+ LLE DL++A++ L  +LF+ T +A  + +L
Sbjct: 326 DATGRMAVVLPQGALFRKGV---EGSIRQKLLEMDLVDAVIGLAPNLFYGTGLAACILLL 382

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-- 468
             RK+ + + KV + +A+ L+      G+ +  +  +   +IL  Y    N + +  +  
Sbjct: 383 RKRKSAKHKKKVLIADASRLFRR----GRAQNYLEAEHAAEILGWYRGFANVQDAVRVVS 438

Query: 469 -DYRTFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPL 510
            D        + + R    PLR         +A  +  +T  + +  
Sbjct: 439 LDEIKAEDWTLNISRYVLPPLREDIPPLPVAIASFKDALTHCREAEE 485


>gi|254712613|ref|ZP_05174424.1| type I restriction-modification system methylation subunit
           [Brucella ceti M644/93/1]
 gi|254715684|ref|ZP_05177495.1| type I restriction-modification system methylation subunit
           [Brucella ceti M13/05/1]
 gi|261217433|ref|ZP_05931714.1| type I restriction modification system protein [Brucella ceti
           M13/05/1]
 gi|261320307|ref|ZP_05959504.1| type I restriction modification system protein [Brucella ceti
           M644/93/1]
 gi|260922522|gb|EEX89090.1| type I restriction modification system protein [Brucella ceti
           M13/05/1]
 gi|261292997|gb|EEX96493.1| type I restriction modification system protein [Brucella ceti
           M644/93/1]
          Length = 508

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 126/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 59  PENVAYSDPDE-------HEFFLVERARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       G   IV+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 333 ATLNTK----GVCGIVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 501 LKEMGYVG 508


>gi|260167612|ref|ZP_05754423.1| type I restriction-modification system methylation subunit
           [Brucella sp. F5/99]
 gi|261757035|ref|ZP_06000744.1| type I restriction-modification system protein [Brucella sp. F5/99]
 gi|261737019|gb|EEY25015.1| type I restriction-modification system protein [Brucella sp. F5/99]
          Length = 508

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 125/548 (22%), Positives = 225/548 (41%), Gaps = 58/548 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M + T +   L N +WK+A+ L G    +D+   I  F  L+RL    E   + ++R+  
Sbjct: 1   MAKLTRT--ELENHLWKSADILRGSIDSSDYKIYIFGFLFLKRLSDRFEEEAKESIRQGL 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAI 114
                 +   E       + F+       S++    T   ++L    + I   + + + +
Sbjct: 59  PENVAYSDPDE-------HEFFLVKRARWSSIKKLTTGIGDHLNKACAAIEDANPSIEGV 111

Query: 115 FEDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSE 169
             + DF+S  +RL  A     +L ++  +FS I+L   ++ +  M    YE+LI +F  +
Sbjct: 112 LANIDFNSE-SRLGDAKNREGVLSRLIDHFSRIDLSNASLSEPDMLGRAYEYLIDKFADD 170

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV L   LL          +P     + DPTCG+GG L     HVA 
Sbjct: 171 AGKKGGEFYTPHHVVRLIVELL----------APKPGMRISDPTCGSGGMLVQVAEHVAK 220

Query: 230 CGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  HGQE    T A+    +L+  L           I++G T+      
Sbjct: 221 LEGKRLGEALNITLHGQEKNLGTWAIAKMNLLLHGL-------RDARIEKGDTIRNPRLL 273

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +      +   ++NPPF       +D      K G   RF  G+P  + G + F+ H+ 
Sbjct: 274 DQDGNLFLYDRVIANPPFSLDSWGAEDVSGDTEKKGH-NRFIYGIPPKNMGDLAFVQHMV 332

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       G   +V+    LF G   SG+  IR  +L+ DL EAI+ LP +LF  T I
Sbjct: 333 ATLNTK----GVCGVVMPHGVLFRG---SGDGRIRESMLKADLFEAIIGLPENLFAGTGI 385

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL+  K  ER+G+V  I+    +        K+ I+ +    +I++ + + ++  
Sbjct: 386 PATVLILNKAKATERKGRVLFIHGAKEFEER----PKKNILGEGNITRIVNAFNAWKDED 441

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F R++D +        +    R    L+      ++A++     +   +      +  +
Sbjct: 442 RFCRIVDMKEIEENDFNL-NISRYIDTLEPEKPIDVQAELAKLWDAETARDEAAARMNAL 500

Query: 523 MQQIYPYG 530
           ++++   G
Sbjct: 501 LKEMGYVG 508


>gi|227500129|ref|ZP_03930200.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217771|gb|EEI83071.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 487

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 224/464 (48%), Gaps = 47/464 (10%)

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +GG L+   + +    S       +   GQE+   +HA+C A MLI+  +    R     
Sbjct: 1   SGGMLSTTYDMLKRRNSG----VDVRLFGQEILESSHAICAADMLIKGQDIRNIRGGDP- 55

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLP 329
             + +TL+ D F  ++    + NPPFG  W         +  V +EHK G  GRFG GLP
Sbjct: 56  --EANTLTTDCFENQKIRLVIMNPPFGTPWGGKDAPSGQEKKVREEHKKGFNGRFGAGLP 113

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             +D  +LF+ H  NKL       GRAAI+ + S LF+G   SGES+ RRWL+END IEA
Sbjct: 114 ATTDAQLLFMQHAVNKLTPD----GRAAIISNGSSLFSGGTTSGESQTRRWLIENDYIEA 169

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQ 448
           I+ LP  LF+ T+IA Y +I+S  K ++R+GK+QLINA D++  +R   GKKRR I+ + 
Sbjct: 170 IIGLPGQLFYNTDIAIYAFIISKNKRKDRQGKIQLINAVDMFKPLRKSLGKKRREIDLES 229

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA-------- 500
           R+ I+ +Y + E  ++S++     F Y+   V  PL+ S  L    + +LE         
Sbjct: 230 RKNIVKLYSAFEENEYSKIFPNEEFLYKEYAVYEPLQRSGSLSLENIKKLEDSVLFTSNS 289

Query: 501 ----DITWRKLSPLH----------------QSFWLDILKPMMQQIYPYGWAESFVKESI 540
                  + +L  ++                + +  D++  + +      + +    + +
Sbjct: 290 HIFNQADFEELQEMNPRNPEDEKKYQKYLKGKKYTDDVIDTLKENASDKHYDDLSEFQDL 349

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
             N  K +    S S +   +      D  A    +  G    DT   + E +   ++++
Sbjct: 350 LKNMLKDVDGH-SASRLNNILFELTEIDKNAVIQKNRKGTIELDTTTRDTEIIKLSQNVE 408

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQY 644
           +YF +EV PHVPDA     + + K     ++G EI F ++FY+Y
Sbjct: 409 EYFNKEVFPHVPDAIYFYDYDENKKNSKEKLGAEIPFTKYFYEY 452


>gi|78358468|ref|YP_389917.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220873|gb|ABB40222.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 505

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 122/535 (22%), Positives = 216/535 (40%), Gaps = 62/535 (11%)

Query: 1   MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M+   G+         +L+  +W+ A  L G     DF   I P    +RL    +   +
Sbjct: 1   MSRKNGNNNPVDLDIGTLSGHLWEAANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYA 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFS 108
              E+      S+ D+E       + F          +   S N  + L+     I   +
Sbjct: 61  VALEE------SDGDVEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQAN 114

Query: 109 DN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            +    IF D  +++   RL  A LL  + ++FS + L        ++   YE+LI++F 
Sbjct: 115 PDTLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNKHCKADILGQAYEYLIKKFA 172

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++ A +F TPR VV L   +L          +P    T+YDP CGTGG L +A++HV
Sbjct: 173 DLTNKKAGEFYTPRSVVALMVRIL----------APKAGETIYDPACGTGGMLLEALHHV 222

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            + G   +   +   +GQE    T ++    + +   E         +I++  TL    F
Sbjct: 223 KEHGGD-ENLMLGKLYGQEKNLTTSSIARMNLFLHGAE-------DFHIERSDTLRLPAF 274

Query: 288 ----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               +   F   ++NPPF  +   D   +     N   GR   GLP    G   ++ H+ 
Sbjct: 275 YSGDSLATFDCVIANPPFSLEKWGDDVWI-----NDPYGRNFAGLPPAKSGDFAWVQHMI 329

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             +       GR A+VL    LF     S E EIRR LLE D++EA++ L  ++F+ T++
Sbjct: 330 KSM---ARKTGRMAVVLPHGVLFR---MSKEGEIRRKLLEMDMLEAVIGLGQNIFYGTSL 383

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           A  + +  + K +  R KV  I+A+  +      G+ +  +  +    I   Y   ++ +
Sbjct: 384 APCVLVFRDSKPKAHRQKVLFIDASKEF----KTGRAQNELLPEHVDNIHRWYEGYQDVE 439

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
              R++           +  P  +  ++++     +  D     L    Q+ +  
Sbjct: 440 GICRVVTLDEIRENDFNLNIPRYVEPVIEEE---SMTIDQAIVNLKESLQAAYAA 491


>gi|89098145|ref|ZP_01171030.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL
           B-14911]
 gi|89087002|gb|EAR66118.1| Type I restriction-modification system M subunit [Bacillus sp. NRRL
           B-14911]
          Length = 497

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 115/532 (21%), Positives = 222/532 (41%), Gaps = 54/532 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +WK+A+ L G    +D+   I     L+RL    E  ++ + +++    G  
Sbjct: 5   TLQELESHLWKSADILRGSVDSSDYKNYIFGLLFLKRLSDVSEERKNNLIKEHGEEIGIL 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLE---SYIASFSDNAKAIFEDFDFS 121
           +  +       Y F+         +   + +  + +      + + +   + +    DF+
Sbjct: 65  LADDP----DQYQFFVPENAKWEEIRKHAEDIGSAINVAFEVLENENATLEGVLTPIDFN 120

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180
                L  + +L ++ ++FS + L  + + +  M    YE+LI+ F  +  +   +F TP
Sbjct: 121 RK-EVLTDS-VLQRLLQHFSLLILTNENLSEPDMLGRAYEYLIKMFADDAGKKGGEFYTP 178

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             VV L   L+           P     +YDPTCG+GG L  ++++V   G +   P  L
Sbjct: 179 SKVVELIVKLI----------KPEEGMRVYDPTCGSGGMLIQSVDYVKHKGGN---PQTL 225

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCL 296
              GQE    T ++    +L+  L           I++G T+ +           F   +
Sbjct: 226 SLFGQEKNLGTWSIAKMNLLLHGL-------PDHRIEKGDTIRQPKLVEDGEIMLFDRVI 278

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K         +E ++   GRF  GLP  + G   F+ H+   L+      G A
Sbjct: 279 ANPPFSLKEWG-----REEAEHDSYGRFQHGLPPKNAGDYAFIQHMVASLKS----NGMA 329

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +V+    LF G A   E  IR+ LLE+DL+EA+V LP++LF+ T I   + I +  K  
Sbjct: 330 GVVMPHGVLFRGGA---EGRIRQGLLESDLLEAVVGLPSNLFYGTGIPACILIFNRDKEA 386

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
           ER G V  I     +      GK +  + +    +++  + + +  + ++R++       
Sbjct: 387 ERNGNVLFIAGESEF----KAGKNQNALREQDIEKMVATFDAYQYVEKYARVVSLEEIRN 442

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
               +     +   +++  +  L A ++  K   +  S   + L   +Q++ 
Sbjct: 443 NDYNLNITRYIDKSIEEEQID-LSAVLSEIKEIEVKHSRNKETLNRYLQELG 493


>gi|121595902|ref|YP_987798.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607982|gb|ABM43722.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 500

 Score =  357 bits (917), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 123/529 (23%), Positives = 212/529 (40%), Gaps = 61/529 (11%)

Query: 1   MTE--FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+   T + + L + +W++A  L G     DF   I P    +R+    +       E+
Sbjct: 1   MTQAASTITLSQLESHLWESANILRGPVDAADFKTYIFPLLFFKRICDVWD-------EE 53

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDN-AK 112
           Y        D +       + F    +   + +   ++N    L+     I   + +   
Sbjct: 54  YQEIVDETGDEQLAWFPESHRFQIPEDCHWNDVRTKASNVGTALQRAMREIEKANPDTLY 113

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +F D  +S+   RL  A LL  + ++FS +      V   ++ + YE+LI++F    ++
Sbjct: 114 GVFGDAQWSNK-DRLSDA-LLKDLIEHFSKLPFGNKNVNSDLLGDAYEYLIKKFADATNK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TPR VV L   +L           P    T+YDP CGTGG L  A+ HV +   
Sbjct: 172 KAGEFYTPRSVVRLMIDML----------DPKEAETIYDPACGTGGMLLAAVQHVKEQHG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
             K       +GQE    T ++    + +  +E          + +G TL    F     
Sbjct: 222 DVK-RLWGKLYGQEKNLTTSSIARMNLFLHGIE-------DFQVVRGDTLRNPAFFEVDR 273

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   ++NPPF       +   E    N   GR   GLP  S G   ++ H+   +  
Sbjct: 274 LATFDCVIANPPFSL-----EKWGEDLWLNDPFGRNFAGLPPSSSGDFAWVQHMVKSMAD 328

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR A+VL    LF       E  IR+ LLE DL+EA++ L  +LF+ T +A  + 
Sbjct: 329 VS---GRMAVVLPQGALFRKGV---EGSIRQKLLEMDLVEAVIGLAPNLFYGTGLAACIL 382

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           +L  RK  + + KV + +A+ L+      G+ +  +  +   +IL  Y    + + +  +
Sbjct: 383 VLRKRKPVKHKKKVLIADASRLFRR----GRAQNYLEPEHAAEILGWYRGFADVQDTVRV 438

Query: 469 ---DYRTFGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPL 510
              D        + + R    PL+         +A  +  +T  + +  
Sbjct: 439 VSLDEIKAEDWTLNISRYVLPPLQEDIPPLPDAIAAFKDALTRCREAEE 487


>gi|24371979|ref|NP_716021.1| type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
 gi|24345831|gb|AAN53466.1|AE015486_7 type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
          Length = 585

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 115/461 (24%), Positives = 189/461 (40%), Gaps = 52/461 (11%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF---VKVAGYSFYN 82
              ++F   I     L+RL  + +  R  V E YLA G + ++ E+          +FY 
Sbjct: 1   MDASEFKDYIFGMMFLKRLSDSFDEAREQVFEYYLAKGKTQVEAEALASDEDEYDSTFYI 60

Query: 83  TSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
                 S L     N    L      I   + N + +    DF +   +L     L  + 
Sbjct: 61  PEVARWSALKDLKHNIGEALNTAAEAIEEHNPNLEGVLVSIDF-NIKNKLSDNK-LRDLL 118

Query: 138 KNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +F+   L         +    YE+LI+ F     +   +F TP +VV L  ALL     
Sbjct: 119 SHFNKYRLRNSDFERPDLLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVALL----- 173

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P     +YDPT G+GG L    N++A    +      L  +GQE+   T A+C 
Sbjct: 174 -----KPHAGMRIYDPTAGSGGMLIQMRNYLATHNENA---ANLSLYGQEMNLNTWAICK 225

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAV 312
             M +  +        S +I++G TL +       +   F   ++NPPF           
Sbjct: 226 MNMFLHGV-------QSADIRKGDTLREPKHTIDGSLMTFDRVIANPPFSLS-----KWG 273

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +++    + GRF  G P    G + F+ H+           G   +V+    LF G   S
Sbjct: 274 KEDCDKDKYGRFPYGTPPKDSGDLAFVQHMIASTNDD----GMVGVVMPHGVLFRG---S 326

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E +IR+ +LE+DL+EA+++LP+ LF+ T I   L I++ +K  ER+GKV  I A   + 
Sbjct: 327 SEKDIRKGILEDDLLEAVISLPSGLFYGTGIPACLLIINKQKPSERQGKVLFIYAELEYH 386

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
                GK +  +      +I+  + S    K +S ++  + 
Sbjct: 387 E----GKNQNSLRPQDINKIVTTFDSFSEIKRYSAVVKLKD 423


>gi|239995892|ref|ZP_04716416.1| hypothetical protein AmacA2_15636 [Alteromonas macleodii ATCC
           27126]
          Length = 333

 Score =  354 bits (908), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 137/343 (39%), Positives = 195/343 (56%), Gaps = 24/343 (6%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + +  A FIW  A+ L GDFK + +G+VILPFTLLRRLEC LE ++ +V ++     
Sbjct: 3   TNNNFSQTAAFIWSVADLLRGDFKQSQYGRVILPFTLLRRLECVLEESKDSVVKEAERVK 62

Query: 64  GSNIDLESFVK-----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             N+  E+  K             G SF+NTS   L  +G ++ + NL +Y+ SFS +A+
Sbjct: 63  AMNLPEEAQEKMLIRATQTTNNPDGLSFFNTSPMDLGKMGQSDIKANLGTYVQSFSSDAR 122

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IFE F F   +  L+ A LLYK+ K F+  +L P  + +  M  ++E LIRRF    +E
Sbjct: 123 EIFEHFKFDEFVGLLDDANLLYKVVKKFATTDLSPKNISNHDMGLVFEELIRRFAESSNE 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +  TPRD+V L T+L+   DD       G+IRT+YDPT GTGGFL+  M +V +   
Sbjct: 183 TAGEHFTPRDIVRLTTSLVFMEDDDALT-KEGIIRTIYDPTAGTGGFLSSGMEYVHELNP 241

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +     ++   GQEL PE++A+C A MLI+  +          I+ G+TLS D     +F
Sbjct: 242 NA----VMRAFGQELNPESYAICKADMLIKGQDV-------SRIKLGNTLSNDQLPADQF 290

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDG 334
            Y LSNPPFG  W+K +  ++ EH   G  GRFG GLP++SDG
Sbjct: 291 DYMLSNPPFGVDWKKIESDIKDEHNLEGFDGRFGAGLPRVSDG 333


>gi|86145619|ref|ZP_01063949.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
 gi|85836590|gb|EAQ54716.1| Type I restriction-modification system M subunit [Vibrio sp.
           MED222]
          Length = 812

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 136/513 (26%), Positives = 214/513 (41%), Gaps = 60/513 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T S   L +F+W++ + L G     D+ + IL    L+RL    E  +  V + Y+  G 
Sbjct: 4   TLSLQQLESFLWESTDILRGSLDAADYRENILGMLFLKRLSDVFEDKKQKVIQHYIDNGR 63

Query: 65  SNIDLESFVKVAG---YSFYNTSEYSLSTLGS--TNTRNNLES---YIASFSDNAKAIFE 116
           +    +   +       +F+     + S L +       +L+     I   +   K +  
Sbjct: 64  TKEQAKELARNRSEYVNTFFVPENANWSALTNVKEEIGQSLDRSMLAIEEHNSELKNVLT 123

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
             DF     RL  A  L  +  +FS   L  +      ++   YE+LI+ F         
Sbjct: 124 SIDFGKK-TRLSNAQ-LRDLVLHFSKCRLLDEDFECPDILGKAYEYLIKMFADSAGRKGS 181

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TPR+VV L  +LL           P    ++YDPT G GG L  + N++ D G    
Sbjct: 182 GFYTPREVVKLMVSLL----------EPSSGMSVYDPTVGAGGMLVQSRNYLKDIGKD-- 229

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----R 291
               L  +GQE+   T  +C   M ++        + + +I+ G TL     T       
Sbjct: 230 --VNLSLYGQEVNQGTWTICRMNMFLQG-------ESNVDIRHGDTLRNPKHTEANRLIT 280

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   +S+PPF  K          E  N   GRF  G+P  + G   F+ H    +     
Sbjct: 281 FDRVISHPPFSLKEWG-----GDELSNDTFGRFKYGIPPRNSGDFAFIQHTLATMNES-- 333

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRA +VL   PL    AG  E +IRR +LE+D+IEA++ LP  +F+ T I T L IL+
Sbjct: 334 --GRAVVVLPHGPLHR--AGKSELDIRRGMLEDDVIEAVIGLPAGIFYGTGIPTCLLILN 389

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
             K  ++RGKV  ++A++ +       K    +  +   +IL  Y   E+ G FSR++  
Sbjct: 390 KCKGRKQRGKVLFVDASNGF----KSNKWMMELRGEDSEKILKAYGDFESIGSFSRIVTV 445

Query: 471 RTFG---YRRIKVLRPLRMSFILDKTGLARLEA 500
                  Y R+ +       +I D     RLE+
Sbjct: 446 DEILKDKYCRLTI-----RLYIDDSEDGKRLES 473


>gi|291296826|ref|YP_003508224.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
 gi|290471785|gb|ADD29204.1| Site-specific DNA-methyltransferase (adenine-specific) [Meiothermus
           ruber DSM 1279]
          Length = 538

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 104/560 (18%), Positives = 194/560 (34%), Gaps = 74/560 (13%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              +WK A+ L G     ++  V+L    L+ +  A E     +  +           E 
Sbjct: 21  EAELWKMADTLRGSMDAAEYKHVVLGLIFLKYISDAFEELHRKLEAERAQGADPEDPDEY 80

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124
               A   F+   E   + L +           +N  + I   +   K +         +
Sbjct: 81  ---RAQNIFWVPPEARWAHLKAQARQPTIGQLVDNAMACIERDNPALKGVLPKEYARPAL 137

Query: 125 ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +      L ++    S I++  +      V+  +YE+ + +F S   +   +F TPR V
Sbjct: 138 DK----TRLGQLIDLISNIKVGDEEARAKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCV 193

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----KIPPI 239
           V L   +L                 +YDP CG+ G    ++  +    + +    +    
Sbjct: 194 VKLLVEML-----------EPYHGRVYDPCCGSAGMFVQSVEFIRAHATGNGNGGRAKAD 242

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE    T  +    + IR +E          I  G T   D F   +  + L+NP
Sbjct: 243 ISIYGQESNYTTWRLAKMNLAIRGIEG--------QIAHGDTFHNDKFPDLKADFILANP 294

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF       +       +  +  R+  G+P + + +  ++ H+   L      G   A  
Sbjct: 295 PFNVSDWGGE-------RLRDDKRWQYGVPPVGNANFAWVQHIVYHLSPTGVAGFVLA-- 345

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR------ 413
            + S   N    SGE EIR+ L+E  L++ +VALP  LF+ T I   LW L+        
Sbjct: 346 -NGSMSSN---QSGEGEIRKNLIEAGLVDCMVALPGQLFYSTQIPACLWFLARDRSSRPY 401

Query: 414 ---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGK 463
                    K  +RRG++  I+A  +   +       R + D+   +I   Y +      
Sbjct: 402 GAAGAAPGGKFRDRRGEILFIDARKMGRMVDRT---HRELTDEDIAKIASTYHAWRGEKD 458

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                D   F  +   +    +  ++L        EA       S   +     ++  + 
Sbjct: 459 AGEYQDVPGFC-KSATLDEVRKHGYVLTPGRYVGAEAQ---EDDSEPFEEKMARLVAQLR 514

Query: 524 QQIYPYGWAESFVKESIKSN 543
           +Q       +  +  ++K  
Sbjct: 515 EQQAEAARLDKAIAANLKEL 534


>gi|293374801|ref|ZP_06621105.1| type I restriction-modification system, M subunit [Turicibacter
           sanguinis PC909]
 gi|292646559|gb|EFF64565.1| type I restriction-modification system, M subunit [Turicibacter
           sanguinis PC909]
          Length = 495

 Score =  352 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 120/526 (22%), Positives = 221/526 (42%), Gaps = 56/526 (10%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + +   L + +W++A  L G    +D+   I     L+R+    E         +     
Sbjct: 3   SITLQELESHLWESANILRGSIDSSDYKNYIFGLLFLKRVNDVFEEIC------HHLVDD 56

Query: 65  SNID-LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKAIFEDF 118
              D  ++  +   Y F+   E   S L S  T+    L      +   + + + +F+  
Sbjct: 57  EGWDLEDAEEERDEYQFFVPKEARWSYLQSLTTDIGPALNHAFERLEEENGSLEGVFKQI 116

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDF 177
           DF+    +L    LL ++ ++FS I L  +++ +  M    YE+LI++F  +  +   +F
Sbjct: 117 DFNDK-EKLPDT-LLIQLIQHFSKINLSNESLEEPDMLGRAYEYLIKQFADDAGKKGGEF 174

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV L   L+           P     + DPT G+GG L  +++++   G +   P
Sbjct: 175 YTPTKVVELLVKLI----------KPEEGMRICDPTSGSGGMLIQSVDYIKSKGGN---P 221

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293
             L  +GQE    T A+C   +L+  L           I++G T+             F 
Sbjct: 222 NNLSLYGQEKNLNTWAICKMNLLLHGL-------SDHRIEKGDTIRDPKLTENGELMLFD 274

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPP+  K         +E    E GRF  GLP  + G   F+ H+   L       
Sbjct: 275 RVIANPPYSLKNWG-----REEASADEFGRFRFGLPPANAGDYAFVQHMLATLNHT---- 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A +VL    LF G A   E +IR+ L++ DLIEAI+ LP +LF+ T I   + + +  
Sbjct: 326 GKAGVVLPHGILFRGGA---EGKIRQGLVKEDLIEAIIGLPANLFYGTGIPATIILYNKD 382

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           K E R+ K+  I+A+  +      GK + ++ D+   +I+  + + E  + +SR++    
Sbjct: 383 KEEARQNKIFFIDASRDFQE----GKNQNVLRDEDVEKIVSTFDNYEEIEKYSRIVTLDE 438

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
                  +     +    ++  +  ++A    ++L    +     +
Sbjct: 439 IKENDYNLNISRYIDTTEEEEQIDVVQAIKELQQLEQEREKIEATM 484


>gi|126453526|ref|YP_001064382.1| type I restriction-modification system M subunit [Burkholderia
           pseudomallei 1106a]
 gi|242316390|ref|ZP_04815406.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106b]
 gi|126227168|gb|ABN90708.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106a]
 gi|242139629|gb|EES26031.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 1106b]
          Length = 822

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 190/490 (38%), Gaps = 58/490 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + L   ++K A+ L G    ++F + I     L+R     +  R  V    LA G S 
Sbjct: 4   TLSQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREQVIRNELAAGKSE 63

Query: 67  IDLE---SFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDN---AKAIFED 117
            + +      +  G SFY         L +    +    L   +    +N      + E 
Sbjct: 64  FEAQTSADLKRWYGESFYVPPRSRWEYLMNEAHNDVGGFLNRALGGLENNNSSLSEVLEH 123

Query: 118 FDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAE 175
            DFS  + + +   + L ++  +FS   L  +       +   YE+LIR F     +   
Sbjct: 124 IDFSRKVGQAKIPDIKLRQLITHFSLYRLRNEDFEFPDLLGAAYEYLIREFADSAGKKGG 183

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV +   LL           P    ++YDP  G+GG L  +  ++ + G    
Sbjct: 184 EFYTPRSVVRMMVRLL----------KPQQNHSIYDPCVGSGGMLILSKEYIDEHGQDG- 232

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291
                  +GQE      ++    ML+  +        + +++   TLS+          R
Sbjct: 233 --SRAELYGQEANGTVWSIAKMNMLLHGI-------ATADLRNDDTLSEPQHVEGGELMR 283

Query: 292 FHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANKL 346
           F   LSNPPF   W   + D+             RF  G          ++FL H+   L
Sbjct: 284 FDRVLSNPPFSINWGTTDTDRTGQTVWSPKFRAERFKYGEVALGSKKADLMFLQHMVAVL 343

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GG+ A V+    LF G     E  IR+ ++E DL+EA++ LP +LF+ T I   
Sbjct: 344 RD----GGQLATVMPHGVLFRGGE---EGAIRKAMIEADLVEAVIGLPANLFYGTGIPAC 396

Query: 407 LWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           + +L  R      K   R+GKV  INA   +      G+ +  +  +   +I+  + +  
Sbjct: 397 ILVLRQRLGNATGKPVGRQGKVLFINADREYFE----GRAQNYLLPEHIEKIVSTFDAFA 452

Query: 461 NGK-FSRMLD 469
               FS ++ 
Sbjct: 453 EVPCFSAIVS 462


>gi|163761335|ref|ZP_02168410.1| Type I restriction-modification system M subunit [Hoeflea
           phototrophica DFL-43]
 gi|162281492|gb|EDQ31788.1| Type I restriction-modification system M subunit [Hoeflea
           phototrophica DFL-43]
          Length = 496

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 113/471 (23%), Positives = 196/471 (41%), Gaps = 48/471 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T + + L + +W+ A+ L G     D+   I      +RL    +       E+Y 
Sbjct: 1   MT--TLTLSQLESHLWRAADILRGSIDSGDYKHYIFGLLFFKRLSDVWQEEYEERLERYG 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
               +    E    +    F+       + +G T+      + I   +   + +F+D DF
Sbjct: 59  DAEIAADPEEHRFDIPKGHFWTDVRKHTTDIG-THLNAAFRA-IEDANMKLRGVFQDVDF 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   R   A +L K+ ++F    L    V   V+   YE+LI +F  +  +   +F TP
Sbjct: 117 NNK-ERFPDA-MLEKLLQHFETYRLRKSDVEPDVLGQAYEYLIAQFADDAGKKGGEFYTP 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L    L           P    ++YDPTCG+GG L +A++H+   G +   P  L
Sbjct: 175 KMVVRLIVECL----------KPEEGMSIYDPTCGSGGMLLEAVHHLERQGKN---PKSL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-------TGKRFH 293
              GQE    T A+C   + +  ++          + +G TL +            + F 
Sbjct: 222 SLFGQEKNLNTWAICQMNLFLHDID-------DAKVARGDTLLEPKHLTGEGVKAIRTFD 274

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPF  K        + +      GR   G P  S G + F+ H+   L+      
Sbjct: 275 RVLANPPFSLKSWGHDVWSQGDA----YGRDRYGCPPKSYGDLAFVQHMVASLKED---- 326

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +VL    LF G A   E  IR  L+ +DL+EA++ L  +LF+   I   + IL  +
Sbjct: 327 GVCGVVLPHGVLFRGGA---EGRIREGLIRDDLVEAVIGLAPNLFYGAGIPACILILRKQ 383

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           K E R+GK+ ++N  +     + +GK + ++++     +   Y    + + 
Sbjct: 384 KPEARKGKILIVNGAEQ----KVDGKNQNLLSETNVATLAKAYDDFADAER 430


>gi|210611279|ref|ZP_03288834.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787]
 gi|210152043|gb|EEA83050.1| hypothetical protein CLONEX_01024 [Clostridium nexile DSM 1787]
          Length = 500

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 195/536 (36%), Gaps = 60/536 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   S       IW  A  L G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MAETNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKA 113
              G   + +     A   F+       S + +          ++     I   +   K 
Sbjct: 59  ---GDGFEEDKDEYTAENIFFVPENARWSVISAAAHTPEIGTVIDEAMRSIEKENKRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L ++   F+ I++        ++   YE+ + +F  +  + 
Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIQMIDHGNSKDILGRTYEYCLAKFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV     +L                 +YDP CG+GG    +   + + G +
Sbjct: 172 AGEFYTPSCVVRTLVEVL-----------QPYNGRVYDPCCGSGGMFVQSSKFIENHGGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K    +  +GQ+  P T  +    + IR +E+D  +  +       T   D     +  
Sbjct: 221 IK---NISVYGQDSNPTTWKLAQMNLAIRGIEADLGKFSA------DTFFNDCHPQLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF               K  +  R+  G P  ++ +  +L H+   L       
Sbjct: 272 FIMANPPFNLSGWGQD-------KLLDDVRWQYGTPPANNANFAWLQHMIWHLAP----N 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE EIR+ ++  DL++ IVA+P+ LF+ T I   LW L+  
Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLAKN 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  +++GK   I+A  L T +     K R + D   ++I D Y +  +G           
Sbjct: 379 K--KQKGKTLFIDARKLGTMVTR---KLRELTDVDIQRIADTYNAFVDG-----TLEDEK 428

Query: 474 GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           G+   +      R  +IL       +E      +      S     L  +  + + 
Sbjct: 429 GFCAVVTTQDIARQDYILTPGRYVGIEEQEDDGEPFEEKMSRLTTELSELFAKSHE 484


>gi|294495709|ref|YP_003542202.1| type I restriction-modification system, M subunit
           [Methanohalophilus mahii DSM 5219]
 gi|292666708|gb|ADE36557.1| type I restriction-modification system, M subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 494

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 124/547 (22%), Positives = 213/547 (38%), Gaps = 72/547 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L  ++W  A  L G    +DF   I P    +R+    +       E   A   S 
Sbjct: 5   SLSELEQYLWDAANILRGPVDASDFKAYIFPLLFFKRISDVYDE------EYRQALDESG 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKAIFEDFDF 120
            D E       + +        + +  T        ++       +  D    IF D ++
Sbjct: 59  GDEEYASFPELHDYIIPEGAHWNDVKDTSTNVGQALQHAFREIEKANQDKLYEIFGDVNW 118

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            +   RL    LL  +  +FS   L    V   ++   YE+LI++F    +  A +F TP
Sbjct: 119 GNK-ERLSD-ELLNDLINHFSSKNLSKSYVEPDMLGQAYEYLIKKFADLTNRKAGEFYTP 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL   +L           P    ++YDP CG+GG L +A+++V   G   +     
Sbjct: 177 RTVVHLMGNIL----------KPQEKESIYDPACGSGGMLLEAVHYVNSSGGDERTLK-- 224

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFHYCL 296
             +GQE    T ++    + +  +           I +G TL    F       +F   +
Sbjct: 225 -LYGQEKNLTTSSIARINLFLHGI-------QDFQIIRGDTLRNPSFHEGDQLSQFDIVI 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K    +            GR   G P  S+G   ++ H+ + +       GR 
Sbjct: 277 ANPPFSLKNWGQEHWSHDPF-----GRNIAGTPPKSNGDYAWVQHMISSMAPVT---GRM 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E +IR+ L+END++EA++ L  +LF+ T I+  + +   RK E
Sbjct: 329 AIVLPHGALFRGAA---EGKIRKKLIENDMLEAVIGLGPNLFYGTGISACILVFRARKDE 385

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
            R+ KV  I+A++ +      G+ +     +    +LD Y   E+ +  S+++D +    
Sbjct: 386 SRKNKVLFIDASEQFQK----GRNQNFFLQEHADNVLDWYEKYEDVEDISKLVDIKE--- 438

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
                           +     L      RK   + +    +  + + Q    +  +E  
Sbjct: 439 ---------------IEENEFNLNISRYVRKKLVVEEIDLEETFQELNQAYDEFLESEEK 483

Query: 536 VKESIKS 542
           +K  +K 
Sbjct: 484 MKSLLKE 490


>gi|149920793|ref|ZP_01909256.1| type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
 gi|149818311|gb|EDM77763.1| type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
          Length = 591

 Score =  350 bits (897), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 125/522 (23%), Positives = 213/522 (40%), Gaps = 53/522 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              + + L + +W+ A  L G     TD+   ILP    +R+  A +  R  + + Y   
Sbjct: 97  EQVNLSKLESHLWEAANILRGSPVDRTDWKSYILPLLFFKRICDAWDEEREDMLKAY--- 153

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            G     E    V     +     +   +G    R+ +     +  D    +F D  +++
Sbjct: 154 DGQVFPDEFRFDVPDGCHWRVVRGATKHVG-KAIRDAMRGIEQANQDKLLGVFGDASWTN 212

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    LL  + ++FS + L    V + V+ + YE+LI++F    ++ A +F TPR 
Sbjct: 213 K-ERLPD-DLLKDLIEHFSKLSLGNKAVKNDVIGDAYEYLIKKFADSTNKKAGEFYTPRS 270

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L    L           P    T+YDP CGTGG L  A+ HV D G   +       
Sbjct: 271 VVRLMVDTL----------DPQEGETIYDPACGTGGMLLAAVEHVKDAGGDPRTFFGK-L 319

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------FTGKRFHYCL 296
            GQE    T +V    + +  +E         +I++G TL +         + ++F   L
Sbjct: 320 FGQEKNLTTASVARMNLQLHGVE-------EFDIRRGDTLRRPAFASAEDHSLRQFDIVL 372

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K            ++   GR   GLP    G   ++ H+   +     G GR 
Sbjct: 373 ANPPFSLKNWG-----RDVWESDPWGRAFAGLPTDKSGDFAWVQHMVKSMAP---GHGRM 424

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL    LF G A   E +IR+ LLE D IE ++ L  +LF+ T +A  + +L   K  
Sbjct: 425 AVVLPQGALFRGGA---EGKIRKKLLELDRIEVVIGLAPNLFYGTGLAACILVLRMTKPA 481

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
            R+ KV +++ + L+      G+ +  +  +   Q+L    + E+ +  +R++       
Sbjct: 482 ARKKKVLVVDGSSLFRK----GRAQNHLEPEHGAQMLSWVRAFEDVEDRARVVSLDEIEE 537

Query: 476 RRIK------VLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
                     VL P+          +A  +A +   + +   
Sbjct: 538 EDWTLNISRYVLPPIGKDIPPLPEAVADFKAALARCREAEEA 579


>gi|124008029|ref|ZP_01692728.1| type I restriction-modification system specificity subunit
           [Microscilla marina ATCC 23134]
 gi|123986443|gb|EAY26249.1| type I restriction-modification system specificity subunit
           [Microscilla marina ATCC 23134]
          Length = 921

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 115/490 (23%), Positives = 205/490 (41%), Gaps = 58/490 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + A L NF+++  + L G+   +++ + I     L+RL    E  +   R+     
Sbjct: 2   KKKITLAWLENFLFQACDILRGNMDASEYKEYIFGILFLKRLNDKFEQDQEKRRKALEKK 61

Query: 63  G-GSNIDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKA------- 113
           G  + +   +  K   Y +Y           G  + + ++   +       +        
Sbjct: 62  GLAAEVVARALNKANAYDYYIPENARWKGKDGIQHLKKHVGDALNKALAAIEDANLDKLS 121

Query: 114 -IFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
            + +  DF+ TI + +       L    ++F  ++L  +      ++   YE+LI+ F  
Sbjct: 122 GVLKSIDFNRTIGKNKKTLDDTKLINFIQHFDTVDLRDENFEFPDILGAAYEYLIKFFAD 181

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP +VV L   LL           P     +YDPTCG+GG L    N+V 
Sbjct: 182 SAGKKGGEFYTPAEVVKLMVQLL----------EPAPNAEVYDPTCGSGGMLIQCKNYVE 231

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
              ++         +GQEL   T A+C   ML   +           I+QG T++  L  
Sbjct: 232 ARYNNASKL---SFYGQELSGTTWALCKMNMLFHDI-------YDAKIEQGDTINNPLHV 281

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +RF   ++NPPF   +++D       +  G   RF   +P+ S    +F+ H+  
Sbjct: 282 VDGELQRFDVVMANPPFSADYKQD-------NIIGFKDRFRHWMPEKSKADFMFVQHMVR 334

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      GR  +V+    LF G   S E ++R WLLE   ++A++ LP  LF+ T I 
Sbjct: 335 VLKD----NGRMGVVMPHGVLFRG---STEKDMRHWLLERGYLDAVIGLPASLFYGTGIP 387

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             L I++  K  ++R KV  INA   +   +N    +  +  +   +I  +Y  R+   +
Sbjct: 388 ASLIIINK-KGADKRRKVLFINADREYKEEKN----QNKLRPEDISKITYVYHQRQELPQ 442

Query: 464 FSRMLDYRTF 473
           +SR++ Y  F
Sbjct: 443 YSRLMSYNDF 452


>gi|163847372|ref|YP_001635416.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222525218|ref|YP_002569689.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl]
 gi|163668661|gb|ABY35027.1| N-6 DNA methylase [Chloroflexus aurantiacus J-10-fl]
 gi|222449097|gb|ACM53363.1| N-6 DNA methylase [Chloroflexus sp. Y-400-fl]
          Length = 528

 Score =  348 bits (892), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 110/552 (19%), Positives = 197/552 (35%), Gaps = 82/552 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W+ A  L G     ++  V+L    L+ +  A E  R  +         +    +    
Sbjct: 24  LWQTANALRGSMDAAEYKHVVLGLIFLKYISDAFEEHRERL-----QNIPNADPEDPDEY 78

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIARL 127
            A   F+   +     L +   + N+   I          + + K +         + + 
Sbjct: 79  RADNVFWVPPDARWVELRNNARQPNIGELIDQAMIAVERDNPSLKGVLPKDYARPALDQ- 137

Query: 128 EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                L ++    S I +         V+  +YE+ + +F S   +   +F TPR VV L
Sbjct: 138 ---QRLGQLIDLVSNIPVGTASARSKDVLGRVYEYFLSQFASAEGKKGGEFYTPRCVVRL 194

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----KIPPILVP 242
              +L                 +YDP CG+ G    ++  +    + +    +    +  
Sbjct: 195 LVEML-----------EPYQGRVYDPCCGSAGMFIQSVEFIEAHATGNGNGSRARARISI 243

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQEL   T  +    + IR ++          I+QG T   D F   +  Y L+NPPF 
Sbjct: 244 YGQELNYTTWRLAKMNLAIRGIDGR--------IEQGDTFRNDRFPDLKADYILANPPFN 295

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K    +       +     R+  G+P + + +  ++ H+ + L      G   A   + 
Sbjct: 296 MKEWGGE-------QLRNDKRWQYGIPPVGNANFAWVQHIVHHLAPAGVAGFVLA---NG 345

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL----SNRKTEER 418
           S   N    SGE EIRR L+E DL++ +VALP  LF+ T I   LW L    +N K  +R
Sbjct: 346 SMSSN---QSGEGEIRRKLIEADLVDCMVALPGQLFYSTQIPACLWFLARNRNNGKFRDR 402

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF---- 473
           R ++  I+A  L   +       R + D++  +I   Y +           D   F    
Sbjct: 403 RKQILFIDARRLGRMVDRI---HRELTDEEIERIACTYHAWRGESDAGEYRDIPGFCKSA 459

Query: 474 --------GYRRIKVLRPLRM-SFILDKTGLARLEADITW----RKLSPLHQSFWLDILK 520
                   GY    VL P R     + +         + W     +      +   + + 
Sbjct: 460 SLEDVRKHGY----VLTPGRYVGSEVREDDDEPFAEKMQWLVAQLREQQAEAAKLDEAIV 515

Query: 521 PMMQQIYPYGWA 532
             +Q++  +   
Sbjct: 516 ANLQELGFWEQK 527


>gi|295101280|emb|CBK98825.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 500

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 107/537 (19%), Positives = 194/537 (36%), Gaps = 62/537 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   S       IW  A  L G+   +++  V+L    L+ +    E     + E+  
Sbjct: 1   MAENNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNAK 112
              G   + +     A   F+       S +          T   + + S I   +   K
Sbjct: 59  ---GDGFEEDQDEYTAENIFFVPENARWSAIAAAAHTPEIGTVIDDAMRS-IEKENKRLK 114

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            I         + +      L ++   F+ I++        ++   YE+ + +F  +  +
Sbjct: 115 DILPKNFARPELDK----RRLGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGK 170

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  VV     +L                 +YDP CG+GG    +   + + G 
Sbjct: 171 LAGEFYTPSCVVRTLVEVL-----------QPFNGRVYDPCCGSGGMFVQSAKFIENHGG 219

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +   GQ+  P T  +    + IR +E+D  +  +       T   D     + 
Sbjct: 220 NINK---ISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFNDCHPQLKA 270

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K  +  R+  G P   + +  +L H+   L      
Sbjct: 271 DFIMANPPFNLSGWGAD-------KLVDDVRWQYGTPPAGNANFAWLQHMIWHLAP---- 319

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR  +VL++  L       GE EIR+ ++  DL++ IVA+PT LF+ T I   LW L+ 
Sbjct: 320 NGRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLAK 377

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K  +++GK   I+A  L T +     K R + D+  ++I D Y +  +G          
Sbjct: 378 NK--KQKGKTLFIDARKLGTMVTR---KLRELTDEDIKKIADTYNAFVDG-----TLEDE 427

Query: 473 FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            G+   +      +  +IL       +E      +            L  +  + + 
Sbjct: 428 KGFCAVVTTQDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMGRLTSELSELFAKSHE 484


>gi|146305600|ref|YP_001186065.1| type I restriction-modification system, M subunit [Pseudomonas
           mendocina ymp]
 gi|145573801|gb|ABP83333.1| type I restriction-modification system, M subunit [Pseudomonas
           mendocina ymp]
          Length = 908

 Score =  346 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 111/492 (22%), Positives = 195/492 (39%), Gaps = 72/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     + A L N +    +DL G+   +++ + I     L+R     +  R  +R++  
Sbjct: 1   MASAKLTLARLENLLLTACDDLRGNMDASEYKEYIFGMLFLKRASDLFDQRRDEIRKEGK 60

Query: 61  AFGGSNID----LESFVKVAGYSFYNTSEYSLST------------LG------STNTRN 98
           A G S+ D    LE   + +G  F+       +             L        T    
Sbjct: 61  AAGLSDDDIKANLEDPDQYSGKYFFVPERARWNDGWVDEKWNVHPALKHVKENVGTALNK 120

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRV-M 155
            LE+   +  +  + + +  +F+  I    L+    L    +NF  I L  +       +
Sbjct: 121 ALEALEEANPEALQDVLKHINFNKKIGQNTLDD-DTLVNFIQNFEKIPLRDEDFEFPDLL 179

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              YE LI+ F     + A +F TP +VV +   +            P    ++YDPT G
Sbjct: 180 GTAYEWLIKHFADSAGKKAGEFYTPAEVVRICVEIC----------DPQEDMSVYDPTVG 229

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +GG L  A +++ +CG+       L  +GQE    T ++C   ML+  +           
Sbjct: 230 SGGMLIQARDYLRECGADA---AELALYGQEKMGTTWSICKMNMLLHGISHAV------- 279

Query: 276 IQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           I+Q  TL +     +     RF   L+NPPF + + K              GRF   +P+
Sbjct: 280 IRQQDTLREPQHQAEDGNLMRFDRVLANPPFSQNYIK--------KDIKHPGRFPVWMPE 331

Query: 331 I-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 ++F+ H+   L+      GR A V+    LF G     E E R++ ++   +EA
Sbjct: 332 KGKKADLMFVQHMLAVLKHD----GRMACVMPHGVLFRGAE---EREARKYFIDRGYLEA 384

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP++LF+ T I   + +L+     ER+  V  IN    +     EGK +  +  +  
Sbjct: 385 VIGLPSNLFYGTGIPACILVLNKAGAAERK-HVLFINGDREY----REGKAQNYLRPEDI 439

Query: 450 RQILDIYVSREN 461
            +I+  Y +   
Sbjct: 440 DKIVHAYRAGLE 451


>gi|147920566|ref|YP_685637.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
 gi|110621033|emb|CAJ36311.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
          Length = 499

 Score =  346 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 127/548 (23%), Positives = 219/548 (39%), Gaps = 64/548 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   +  ++   +W+ A+ L G     D+   I     L+RL    E           
Sbjct: 1   MSEK-LTFETMKAKVWEAADILRGSIDSADYKNYIFGMLFLKRLSDVFEEE------AEK 53

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLE---SYIASFSDNAKAIF 115
               +     ++     + F+   +   S L   S+N  + L      I   ++  + + 
Sbjct: 54  IEKETGDKDAAWNDPDEHQFFVPEKARWSELKKSSSNIGDKLNKACEAIEDKNNVLEGLL 113

Query: 116 EDFDFSSTIARLEKAG----LLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEV 170
              DF++   +L +       L ++ ++FS I +      +  M   +YE+LI +F  + 
Sbjct: 114 ASIDFNT--DKLGEPKQRDATLSQLIQHFSKIPMRNSDFAEPDMLGRVYEYLIEKFADDA 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TPR VV L   LL           P     + DPTCG+GG L ++ ++V   
Sbjct: 172 GKKGGEFYTPRMVVKLIVELL----------EPKEGMRICDPTCGSGGMLIESAHYVEQH 221

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--- 287
           G + K    L   GQE    T  +C   M++          +  NI++G T+        
Sbjct: 222 GGNSK---NLSLFGQEKNIGTWGICKMNMVLHG-------YVDVNIEKGDTIRDPKHVKD 271

Query: 288 -TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                F   ++NPPF            +E +    GRF  G+P  + G   F+ H+   L
Sbjct: 272 GQLMLFDRVIANPPFSLD-----KWGREEAEKDGFGRFSYGIPPKTKGDFAFVEHMIATL 326

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G+  +V+    LF G A   E +IR  ++++DLIEAI+ LPT+LF+ T I   
Sbjct: 327 NSK----GKLGVVVPHGVLFRGAA---EGKIREGIIKDDLIEAIIGLPTNLFYGTGIPAA 379

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + I++  K  ER+GK+ ++NA D +      GK +  + D    +I+       +  K+S
Sbjct: 380 ILIMNRDKPAERKGKIIIVNAVDEYQE----GKNQNYLRDQDIEKIVRAVREYIDIDKYS 435

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           R++               L +S  +D T            K     +    +I K M   
Sbjct: 436 RIVSLDEIKENDY----NLNISRYVDTTMEEPPIDIKAVLKELKEIEVRRAEIGKKMDAY 491

Query: 526 IYPYGWAE 533
           +   G+ E
Sbjct: 492 LKELGYVE 499


>gi|257440121|ref|ZP_05615876.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
 gi|257197473|gb|EEU95757.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
          Length = 500

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 107/537 (19%), Positives = 193/537 (35%), Gaps = 62/537 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   S       IW  A  L G+   +++  V+L    L+ +    E     + E+  
Sbjct: 1   MAENNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNAK 112
              G   + +     A   F+       S +          T   + + S I   +   K
Sbjct: 59  ---GDGFEEDQDEYTAENIFFVPENARWSAIAAAAHTPEIGTVIDDAMRS-IEKENKRLK 114

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            I         + +      L ++   F+ I++        ++   YE+ + +F  +  +
Sbjct: 115 DILPKNFARPELDK----RRLGEVVDLFTNIQMIEHGNSKDILGRTYEYCLSKFAEQEGK 170

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  VV     +L                 +YDP CG+GG    +   + + G 
Sbjct: 171 LAGEFYTPSCVVRTLVEVL-----------QPFNGRVYDPCCGSGGMFVQSAKFIENHGG 219

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +   GQ+  P T  +    + IR +E+D  +  +       T   D     + 
Sbjct: 220 NINK---ISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFNDCHPQLKA 270

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K  +  R+  G P   + +  +L H+   L      
Sbjct: 271 DFIMANPPFNLSGWGAD-------KLVDDVRWQYGTPPAGNANFAWLQHMIWHLAP---- 319

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR  +VL++  L       GE EIR+ ++  DL++ IVA+PT LF+ T I   LW L+ 
Sbjct: 320 NGRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPTQLFYTTQIPVSLWFLAK 377

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K  +++GK   I+A  L T +     K R + D+  ++I D Y +  +G          
Sbjct: 378 NK--KQKGKTLFIDARKLGTMVTR---KLRELTDEDIKKIADTYNAFVDG-----TLEDE 427

Query: 473 FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            G+   +         +IL       +E      +            L  +  + + 
Sbjct: 428 KGFCAVVTTQDIANQDYILTPGRYVGIEEQEDDVEPFEEKMGRLTSELSELFTKSHE 484


>gi|261367888|ref|ZP_05980771.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
 gi|282570699|gb|EFB76234.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
          Length = 500

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 101/536 (18%), Positives = 196/536 (36%), Gaps = 60/536 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   S       IW  A  L G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MADKNTSNIGFEKQIWDAACVLRGNIDASEYKSVVLGLIFLKYISDRFEAKYKELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKA 113
              G   + +     A   F+   +   S + +          ++     I   +   K 
Sbjct: 59  ---GDGFEEDKDEYTAENIFFVPEDARWSVIAAAAHTPEIGTVIDEAMRSIEKENKRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L ++   F+ I++        ++   YE+ + +F  +  + 
Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIQMMEHGDSKDILGRTYEYCLSKFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV     +L                 +YDP CG+GG    +   + + G +
Sbjct: 172 AGEFYTPSCVVRTLVEIL-----------QPYNGRVYDPCCGSGGMFVQSAKFIENHGGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQ+  P T  +    + IR +E+D  +  +       T   D     +  
Sbjct: 221 INK---ISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFNDCHPQLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +       K  +  R+  G P   + +  ++ H+   L       
Sbjct: 272 FIMANPPFNLSDWGQE-------KLLDDVRWQYGTPPAGNANFAWMQHMIWHLAP----N 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE EIR+ ++  DL++ IVA+P+ LF+ T I   LW L+  
Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVDCIVAMPSQLFYTTQIPVSLWFLAKN 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  +++GK   I+A  + T +     K R + D+  +++ D Y +  +GK          
Sbjct: 379 K--KQKGKTLFIDARKMGTMVTR---KLRELTDEDIQKLADTYNAFVDGKL-----EDVK 428

Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           G+  +       +  +IL       +E      +            L  + Q+ + 
Sbjct: 429 GFCAVATTEEIAKQDYILTPGRYVGIEEQQDDGEPFEDKMERLTKELSGLFQKSHE 484


>gi|261417779|ref|YP_003251461.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|319767408|ref|YP_004132909.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
 gi|261374236|gb|ACX76979.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC61]
 gi|317112274|gb|ADU94766.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
          Length = 497

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 105/521 (20%), Positives = 202/521 (38%), Gaps = 60/521 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A+ L  +    ++  V+L    L+ +    +     + ++       +   +   
Sbjct: 9   KLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKE-----DPDFAEDRDA 63

Query: 74  KVAGYSFYNTSEYSLSTLGST-------NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +A   F+       S +             +     I   +D+ K +         + +
Sbjct: 64  YMADGVFWVPETARWSYIAERSKSPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPELDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                +L +I   FS I++         V+  +YE+ + +F +   +G  +F TP+ VV 
Sbjct: 124 ----RILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVK 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   ++                 +YDP CG+GG    +M  V +   +      +  +GQ
Sbjct: 180 LMVEMI-----------QPFKGYVYDPACGSGGMFVQSMKFVEEHAGN---KFDISIYGQ 225

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P T  +    + IR +E++         +   T  +DL    +  Y L+NPPF    
Sbjct: 226 ESNPTTWKLAKMNLAIRGIENNLGP------KHADTFHEDLHPTLKADYILANPPFNDSD 279

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 ++         R+  G+P   + +  +L H+ +KL    +  G+AA+VL++  L
Sbjct: 280 WGQPKLID-------DPRWKFGIPPAGNANYAWLQHMIDKL----SQNGKAAVVLANGSL 328

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 SGE EIR+ ++  DL++AI+ALP  LF+ T I   +WIL+  K  +   K   I
Sbjct: 329 --SSMTSGEGEIRKNIVNADLVDAIIALPDKLFYTTQIPVCIWILNRNK--KHPRKTLFI 384

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPL 484
           +A      +     K R + D+  R+I D Y++ +N +    +     G+ +   +    
Sbjct: 385 DARKFGQLVTR---KLRELTDEDIRKIADTYINWQNNENYEDVQ----GFCKSATIDDIR 437

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             ++IL       +E +    +            L    Q+
Sbjct: 438 EHNYILTPGRYVGIEEEEEDGESFEEKMERLTATLAKQFQK 478


>gi|114319660|ref|YP_741343.1| type I restriction-modification system, M subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114226054|gb|ABI55853.1| type I restriction-modification system, M subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 808

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 114/477 (23%), Positives = 184/477 (38%), Gaps = 61/477 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L   ++K A+ L G    ++F + I     L+R     +  R  VR    A G
Sbjct: 1   MILTLNQLERHLFKAADILRGRMDASEFKEYIFGMLFLKRCSDVFDQRREEVRGSLQASG 60

Query: 64  GSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDN---AKAI 114
            S  ++   +++       F+   +     L +       + L   +A   ++      +
Sbjct: 61  KSEAEIAQLIEMPHWYKADFFVPPQSRWDHLLNEAHQGVGSALNKALAGLEEHNHGLAGV 120

Query: 115 FEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVS 171
            E  DF+  +    L     L  +  +FS   L  +       +   YE+LIR F     
Sbjct: 121 LEHIDFTRKVGSTTLPDRK-LRDLIAHFSEYRLRNEDFEFPDLLGAAYEYLIRDFADSAG 179

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV +   L+           P     +YDP  G+GG L  A  ++ + G
Sbjct: 180 KKGGEFYTPRPVVRMMVRLM----------DPQEGHRVYDPCMGSGGMLIMAKEYLEEHG 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
                P +L   GQE      A+    ML+  +        S +++   TL+        
Sbjct: 230 GD---PRLLNLFGQEASGSVWAIAKMNMLLHGI-------SSADLRNEDTLTDPQHVEGG 279

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANK 345
             KRF   L+NPPF   +   +   E         RF  G          ++FL H+   
Sbjct: 280 ELKRFDRILTNPPFSIGYTPSQHFPE---------RFRYGSVPEGAKKADLMFLQHMVAC 330

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    N  GR A V+    LF G     E  IR  LLE+DL+EA++ L  +LF+ T I  
Sbjct: 331 L----NANGRLATVMPHGVLFRGG---DEKRIRAGLLEDDLVEAVIGLAPNLFYGTGIPA 383

Query: 406 YLWILSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            + +L  +  K  ER+GKV  INA   +      G+ +  +  +   +I   Y + E
Sbjct: 384 SILVLRAKGAKPAERQGKVLFINADREYHE----GRAQNHLLPEHIEKIASTYEAFE 436


>gi|148266054|ref|YP_001232760.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146399554|gb|ABQ28187.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 824

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 106/464 (22%), Positives = 182/464 (39%), Gaps = 57/464 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-REKYLAFGGSNIDLESFVKVA 76
             +DL G+   +++ + I     L+RL    +  R  + ++         +         
Sbjct: 16  ACDDLRGNMDASEYKEYIFGMLFLKRLSDLFDQEREQLAKDLKEKGMAEAVIAGQLNNPD 75

Query: 77  GYSFYNTSEYSLSTLGS--TNTRNNLESYIASFS----DNAKAIFEDFDFSSTI-ARLEK 129
            Y+F+   E   S +    TN   NL   + +      D  + + +  +F+  I  R   
Sbjct: 76  KYTFFVPEEAHWSNIRHLKTNVGTNLNKALEALEDANVDALQDVLKGINFNKKIGQRSLD 135

Query: 130 AGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              L    +NF  I L  +       +   YE+LI+ F     + A +F +P DVV    
Sbjct: 136 DDTLANFIQNFEKIPLRDENFEFPDLLGAAYEYLIKYFADSAGKKAGEFYSPADVVRTLV 195

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++           P    ++YDPTCG+GG L    ++V +CG     P  L   GQE  
Sbjct: 196 EIV----------DPQPGMSVYDPTCGSGGMLIQTRDYVRECGGD---PRDLALAGQESI 242

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPFGK 303
             T ++C   ML+  +E         +I+Q  TL       +     R    L+NPPF +
Sbjct: 243 GTTWSICKMNMLLHGIEH-------ADIRQEDTLRHPQHKAENNELQRHDRVLANPPFSQ 295

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            + K              GRF   LP+      ++F+ H+   L+      G+ A V+  
Sbjct: 296 NYIK--------KDIDYPGRFAVWLPEKGKKADLMFVQHMLAVLKAD----GKMATVMPH 343

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---EERR 419
             LF G     E   RR  +E+  +EA++ LP  LF+ T I   + +++ +     +  R
Sbjct: 344 GVLFRGGE---EKAARRHFIEHGWLEAVIGLPAGLFYGTGIPACVLVMNKKDAGSGDNVR 400

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             V  INA   +     EGK +  +  +   +I+  Y +  +  
Sbjct: 401 DHVFFINADREY----REGKAQNFLRPEDISKIVHAYRTMADVP 440


>gi|257438277|ref|ZP_05614032.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
 gi|257199239|gb|EEU97523.1| ribosomal protein L11 [Faecalibacterium prausnitzii A2-165]
          Length = 501

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 199/536 (37%), Gaps = 60/536 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   + +     
Sbjct: 1   MAEKNTADIGFEKQIWNAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVA--- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113
              G   + +     +   F+  +    S + +          ++     I   +   K 
Sbjct: 58  --DGDGFEEDRDEYTSEGIFFVPAGARWSDVSAKAHDPEIGQVIDDAMRAIEKENVRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I    +F+     L+K   L ++   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 116 ILPK-NFARQ--ELDKR-RLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   V +   +
Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------QPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E D  +  +       T   D     R  
Sbjct: 221 IN---DISIYGQDSNPTTWKLAQMNLAIRGIEPDLGKYAA------DTFLDDQHPTMRAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF       +       +  +  R+  G+P  S+ +  +L H+   L      G
Sbjct: 272 YIMANPPFNLSNWGAE-------QLKDDVRWQYGMPPASNANFAWLQHMIYHLAP----G 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S R
Sbjct: 321 GRMGMVLANGSL--SSQSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKR 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  ++ GK   I+A  +   +     K R + D+  ++I D Y +  NG           
Sbjct: 379 K--KQAGKTLFIDARKMGDMVSR---KLRELTDEDIKKIADTYNAYVNG-----TLEDVK 428

Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           G+  +    +     +IL       +E      +      +     L  + +Q + 
Sbjct: 429 GFCAVVDTEKIAEQDYILTPGRYVGVEEQEDDGEPFEEKMARLTSELSDLFKQSHK 484


>gi|83590508|ref|YP_430517.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073]
 gi|83573422|gb|ABC19974.1| N-6 DNA methylase [Moorella thermoacetica ATCC 39073]
          Length = 516

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 122/555 (21%), Positives = 221/555 (39%), Gaps = 62/555 (11%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAV 55
           MTE T    ++L N++W+ A  + G      +   ILP   L+RL    E         +
Sbjct: 1   MTENTNMDLSTLENWLWEAACVIRGAVDAPKYKDYILPLIFLKRLSDVFEDEIARLAEEI 60

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDN 110
            +          +  + V+     FY   +     +   +TN    L S + +    +  
Sbjct: 61  FDSIEEALKQVEEDHALVR-----FYIPPQARWDAISRQTTNIGEYLTSAVRAVARENPK 115

Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              IFE+ DF++ +    +     LY + +  S   L    V   ++   YE+L+R+F  
Sbjct: 116 LHGIFENIDFNAQMAGQPVIDNDRLYNLIQVLSRHRLGLKDVEVDILGRAYEYLLRKFAE 175

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TPR+V  L   LL           P     +YDP CG+GG L  ++  + 
Sbjct: 176 GQGQSAGEFYTPREVTWLMAYLL----------EPRPGDEIYDPACGSGGLLIKSVLALK 225

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +          +  +GQE+   T A+      I  LE+D        I+ G T+++  FT
Sbjct: 226 ETYGDDPRIAPVKIYGQEILYTTFAMAKMNAFIHDLEAD--------IRLGDTMARPAFT 277

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHL 342
                 + F    +NP +       +      ++     RF   G+P  S     ++ H+
Sbjct: 278 NPDGSLRTFDKVTANPMWN------QKFPLPLYEEDPFDRFKFGGIPPASSADWGWIQHM 331

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFF 399
              L+     GG+ A+VL +  +  G    G   E +IR+  +ENDL+E ++ LP ++F+
Sbjct: 332 FASLKE----GGKMAVVLDTGSVSRGSGNQGSNRERDIRKVFVENDLVECVILLPENMFY 387

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS- 458
            T     + +++  K  +   ++ LINA+ L+T     G+ +  + D+  +Q+  IY   
Sbjct: 388 NTTAPGIIMVINKAK--KHPAEILLINASKLFTK----GRPKNYMEDEHIKQVYSIYREW 441

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           RE    S+++           +  P R   I  K     +E  +         +      
Sbjct: 442 REEEGLSKIIPVEEAARNDYNL-SPSRYVSINGKEEYRPIEEILVELAEVEEERQAVDKE 500

Query: 519 LKPMMQQIYPYGWAE 533
           L  ++ ++   GW  
Sbjct: 501 LNDILGKLGFGGWLN 515


>gi|226225587|ref|YP_002759693.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
 gi|226088778|dbj|BAH37223.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
          Length = 519

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 105/534 (19%), Positives = 185/534 (34%), Gaps = 59/534 (11%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           ++   ++A++     +W  A+ L  +    ++  V+L    L+ +  A E   + +  ++
Sbjct: 8   SKSAATSANIGFEAKLWAAADALRNNMDAAEYKHVVLGLIFLKYISDAFEIKHAELASQH 67

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
                     E     A   F+  +E     L +   +       ++  + I   + + K
Sbjct: 68  ADGADPEDPDEY---RADNIFWVPAEARWQFLKANAPQPGVGTMVDDAMAAIERDNPSLK 124

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVS 171
            +         + +      L +I    S IEL          +  +YE+ + RF S   
Sbjct: 125 GVLPKDYARPGLDK----QRLGQIINLVSDIELGSSADKSKDTLGRVYEYFLSRFASAEG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L                 +YDP CG+GG    +   +    
Sbjct: 181 KSGGQFYTPSYVVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEAH- 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + IR ++          I  G TL  D     +
Sbjct: 229 --AGKLDDISIYGQESNYTTWRLAKMNLAIRGID--------AQIGHGDTLHDDKHPDLK 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF     + +          +  R+  G P   + +  ++ H  + L     
Sbjct: 279 ADYVLANPPFNDSDWRGE-------LLKDDQRWAYGAPPAGNANFAWVQHFIHHLSPTGL 331

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G   A   + S   N    SGE EIR+ ++E DL++ +VALP  LF+ T I   LW L+
Sbjct: 332 AGFVLA---NGSMSSN---QSGEGEIRKTIVEADLVDCMVALPGQLFYSTQIPVCLWFLA 385

Query: 412 NRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
             K      +RRG V  I+A  L +        RR + D     I D Y +    K +  
Sbjct: 386 RNKRNGRFRDRRGHVLFIDARKLGSMADRV---RRELTDADIANIADTYHAWRGDKDAGE 442

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
                   + + +    +   +L        E      +   L        L  
Sbjct: 443 YADVAGFCKSVYIDEIRQHGHVLTPGRYVGAEDIEDDGEPFELKMRRLSAQLHE 496


>gi|268316649|ref|YP_003290368.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252]
 gi|262334183|gb|ACY47980.1| N-6 DNA methylase [Rhodothermus marinus DSM 4252]
          Length = 527

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 110/501 (21%), Positives = 192/501 (38%), Gaps = 66/501 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                ++L  ++W  A  + G      F   ILP   L+RL    E     + E+Y +  
Sbjct: 1   MALDISTLETWLWDAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDEMDRLAEEYGSRE 60

Query: 64  -----GSNIDLESFVKVAGYS--FYNTSEYSLSTLGST---NTRNNLESYIAS---FSDN 110
                      +  +   G S  FY         + +         L   + +    +  
Sbjct: 61  VAQHIVEEEREQGIIARGGGSVRFYIPENARWKAIRTRGQVGLGQFLTDAVRAVARENPR 120

Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            + + +  DF++T    R+     L ++    S   L    V   ++   YE+L+R+F  
Sbjct: 121 LQGVIDIVDFNATAAGQRIVADEYLARLVDVLSRHRLGLRDVEPDILGRAYEYLLRKFAE 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TPR+V  L   +L           P    T+YDP CG+GG L      + 
Sbjct: 181 GQGQSAGEFYTPREVAVLMARIL----------EPQPGMTVYDPCCGSGGLLIKCHLRLL 230

Query: 229 DCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +     +                GQE+ P T A+     +I  +E+D        I+ G 
Sbjct: 231 ETHGEEQNGHRRLPAHHAPLQLFGQEINPATFAMARMNAVIHDMEAD--------IRLGD 282

Query: 281 TLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           T+    F  +      F    +NP + + +  D       ++N    RF  G+P  S   
Sbjct: 283 TMRHPAFRDETGRLMAFDLVTANPMWNQNFPTDL------YENDPYERFHLGIPPASSAD 336

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVA 392
             +L H+   L    N  GR A+VL +  +  G    G   E +IR+  +E DLIEA++ 
Sbjct: 337 WGWLQHMLASL----NDTGRMAVVLDTGAVSRGSGNQGASRERDIRKAFVERDLIEAVIL 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T     + +++ +K     G++ LINA+ L+      G+ +  + D+    I
Sbjct: 393 LPENLFYNTTAPGIIIVINRKK--RHPGEILLINASKLFAK----GRPKNYLTDEHIETI 446

Query: 453 LDIYVSRE-NGKFSRMLDYRT 472
             +Y   +     S ++    
Sbjct: 447 ARLYHEWQAEEGLSAIITNEE 467


>gi|85716963|ref|ZP_01047927.1| type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
 gi|85696242|gb|EAQ34136.1| type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
          Length = 500

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 119/528 (22%), Positives = 201/528 (38%), Gaps = 50/528 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            +     L + +W  A  L G     TD+   ILP    +R+    +   +  RE Y   
Sbjct: 1   MSQQFQELRSALWDAANTLRGSAVDRTDWKGYILPLLFFKRISDVWDEETTEARELYGDA 60

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             S         +     +N      + +G+   +  ++    +  D    +F   D+ +
Sbjct: 61  DPSLFPEIHRFALPEGCHWNDVREVAANVGA-ALQRAMQEIERANPDTLFRVFGTADWGN 119

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPR 181
              +     LL  + + FS I+L    V   V+ + YE+L+ +F          +F TPR
Sbjct: 120 R-EKFSD-ELLKDLIEGFSEIQLGNKAVSTDVLGDAYEYLVGKFADVTRRNKAGEFYTPR 177

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V +   +L           P    ++YDP CGTGG L  A+ HV   G   +      
Sbjct: 178 SIVRMMVDIL----------DPQEGESIYDPACGTGGMLLGAIEHVVRNGGDPRTFYGK- 226

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------KRFHYC 295
            +GQE    T A+    +++  +E          + +  TL    FT         F   
Sbjct: 227 IYGQEKNLTTAAIARMNLVLHGIE-------DFQVAREDTLRNPAFTDSSTSGLATFDCV 279

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K            +    GR   G+P  S G   F+ H+   +     G  R
Sbjct: 280 IANPPFSLKEWG-----RDLWEADPWGRAQYGIPPESYGDYAFVQHMIASMVPI--GNSR 332

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+VL    LF     S E  IRR LLE D++EA++ L  +LF+ T +A  + +L  RK 
Sbjct: 333 MAVVLPQGALFR---KSAEGTIRRALLEQDMVEAVIGLAPNLFYGTQLAGCVMVLRRRKP 389

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG---KFSRMLDYRT 472
           E  + KV +I+A+ L+      G+ +  ++     QI+  Y +  +         LD   
Sbjct: 390 ENHQNKVLIIDASSLFRK----GRAQNFLDQGHSDQIVAWYRAFADVADRAKVATLDEIK 445

Query: 473 FGYRRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
                + + R    P+          +  L+  +   + +  H    L
Sbjct: 446 KEGWTLNISRYVLPPIGQDIPPLPKAVEALKTALADARAAEDHLRKVL 493


>gi|239827073|ref|YP_002949697.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239807366|gb|ACS24431.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 498

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 105/521 (20%), Positives = 201/521 (38%), Gaps = 60/521 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A+ L  +    ++  V+L    L+ +    +     + ++       +   +   
Sbjct: 9   KLWSAADKLRNNMDAAEYKHVVLGLIFLKYVSDTFQEKWEELMKE-----DPDFAEDRDA 63

Query: 74  KVAGYSFYNTSEYSLSTLGST-------NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +A   F+       + +             +     I   +D+ K +         + +
Sbjct: 64  YMADGVFWVPETARWNYIAERSKLPEIGKIVDEALDAIEKENDSLKGVLPKNYSRPELDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                +L +I   FS I++         V+  +YE+ + +F +   +G  +F TP+ VV 
Sbjct: 124 ----RILGEIIDLFSNIDVGGSGAKEKDVLGRVYEYFLGKFAASEGKGGGEFYTPKCVVK 179

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   ++                 +YDP CG+GG    ++  V +   +      +  +GQ
Sbjct: 180 LMVEMI-----------QPFKGYVYDPACGSGGMFVQSIKFVEEHAGN---KFDVSIYGQ 225

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E  P T  +    + IR +E++         +   T  +DL    +  Y L+NPPF    
Sbjct: 226 ESNPTTWKLAKMNLAIRGIENNLGP------KHADTFHEDLHPTLKADYILANPPFNDSD 279

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K  E  R+  G+P   + +  +L H+ +KL       G+AA+VL++  L
Sbjct: 280 WGQP-------KLVEDPRWKFGVPPAGNANYAWLQHIIDKL----GQNGKAAVVLANGSL 328

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 SGE EIR+ ++  DL++AI+ALP  LF+ T+I   +WIL+  K  +  GK   I
Sbjct: 329 --SSTTSGEGEIRKNIVNADLVDAIIALPDKLFYTTSIPVCIWILNRNK--KNPGKTLFI 384

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPL 484
           +A      +     K R ++D+  R+I D Y+  +N      +     G+ +   +    
Sbjct: 385 DARKFGQLVTR---KLRELSDEDIRKIADTYIHWQNNDNYEDVQ----GFCKSASLEEIR 437

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
              +IL       +E +    +            L    ++
Sbjct: 438 EHDYILTPGRYVGVEEEEEDGESFEEKMERLTTTLAKQFKK 478


>gi|325107544|ref|YP_004268612.1| type I restriction-modification system, M subunit [Planctomyces
           brasiliensis DSM 5305]
 gi|324967812|gb|ADY58590.1| type I restriction-modification system, M subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 510

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/540 (20%), Positives = 197/540 (36%), Gaps = 77/540 (14%)

Query: 1   MTEFTGSAASLANF------IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           MT   G  +   +       +WK  +   G    +++   IL    ++ +    +    A
Sbjct: 1   MTNGNGKQSETVSQAEINGILWKACDTFRGAVDPSEYKNYILVMLFVKYISDVWQDHYDA 60

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA- 113
           +  +Y              ++    F    + +  +L       N+   I    D  +  
Sbjct: 61  LVAEYGDPKSKTARERIERRLKRERFVLPVQCTFQSLYDQRNAANIGEVINEALDAIEDA 120

Query: 114 -------IFEDFDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYE 160
                  +F + DF+S        E+   L  + ++FS   ++L P  V +  V+ + YE
Sbjct: 121 NKEKLEGVFRNIDFNSESTLGQTRERNVRLKSLLEDFSDPKLDLRPSRVGNLDVIGDAYE 180

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI RF S   + A +F TP +V  L   L+           P     + DP CG+G  L
Sbjct: 181 YLIGRFASNAGKKAGEFYTPPEVSELIARLV----------DPQPGERICDPACGSGSLL 230

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 V               +GQE    T A+    M +  ++       +  I+ G 
Sbjct: 231 IKCGQKV--------GTNDFSLYGQENNGSTWALAKMNMFLHAMD-------NARIEWGD 275

Query: 281 TLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           T+            RF   ++NPPF           +++ ++    RF  G+P  + G +
Sbjct: 276 TIRNPRLLSDDRLMRFEVVVANPPFSLD-----KWGQEDARSDHYNRFHRGVPPKNKGDL 330

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ H+    E      GR A+V     LF GRA   E  IR+  ++ DL++AI+ LP D
Sbjct: 331 AFISHMV---ETITVESGRIAVVAPHGVLFRGRA---EGSIRKQFVDEDLLDAIIGLPPD 384

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T +A  + +        R GKV  I+A+  +   +        +      +I+  Y
Sbjct: 385 LFYGTELAAAILVFRR---SNRDGKVLFIDASQEYADCKG----HNRLRKQDIERIVAAY 437

Query: 457 VSRENGKFSRMLDYRT----FGYRRI------KVLRPLRMSFILDKTGLARLEADITWRK 506
             RE       L  +      GY           + PL +      T LA ++  +   +
Sbjct: 438 SEREFIDKYAYLASKEDIQRNGYNLNIPRYVDTFVEPLPIDLESVGTRLAEVDQALAEAE 497


>gi|160945580|ref|ZP_02092806.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443311|gb|EDP20316.1| hypothetical protein FAEPRAM212_03109 [Faecalibacterium prausnitzii
           M21/2]
          Length = 500

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 102/536 (19%), Positives = 193/536 (36%), Gaps = 60/536 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   + +     
Sbjct: 1   MAEKNTADIGFEKQIWNAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVA--- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113
              G   + +     +   F+  +    S + +          ++     I   +   K 
Sbjct: 58  --DGDGFEEDRDEYTSEGIFFVPAGARWSDVSTKAHDPEIGQVIDDAMRAIEKENARLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L ++   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   V +   +
Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------QPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E D  +  +       T   D     R  
Sbjct: 221 IN---DISIYGQDSNPTTWKLAQMNLAIRGIEPDLGKYAA------DTFLDDQHPTMRAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF       +       +  +  R+  G+P  S+ +  +L H+   L      G
Sbjct: 272 YIMANPPFNLSNWGAE-------QLKDDVRWQYGMPPASNANFAWLQHMIYHLAP----G 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S R
Sbjct: 321 GRMGMVLANGSL--SSQSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKR 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  ++ GK   I+A  +   +     K R + D+  ++I D Y +   G           
Sbjct: 379 K--KQAGKTLFIDARKMGAMVSR---KLRELTDEDIKKISDTYNAYVEG-----TLEDVK 428

Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           G+  +    +     +IL       +E      +            L  + +Q + 
Sbjct: 429 GFCAVVDTEKIAEQDYILTPGRYVGVEEQEDDGEPFEEKMVRLTSELSDLFKQSHK 484


>gi|317131471|ref|YP_004090785.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
 gi|315469450|gb|ADU26054.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ethanoligenens harbinense YUAN-3]
          Length = 501

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/536 (19%), Positives = 192/536 (35%), Gaps = 60/536 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  L G+    ++  VIL    L+ +    E   + + +   
Sbjct: 1   MATTNSAETGFEKQIWDAACILRGNMDAAEYKHVILGLIFLKYISDRFEFRYNQLVK--- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
               +  + +     +   FY        ++ +           +N    I   + + K 
Sbjct: 58  --DKNGDEEDRDEYTSQNVFYVPPSARWESITAQAHMPEIGKIIDNAMDSIERENKSLKG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +         + +      L ++   F+ I +        ++   YE+ + RF  +  + 
Sbjct: 116 VLPKTFARPELDK----RRLGEVVDLFTNITIAETGGKMDMLGRTYEYCLGRFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV    A++                 +YDP CG+GG    +   V     +
Sbjct: 172 AGEFYTPASVVRTLVAVI-----------KPFDGRVYDPCCGSGGMFVQSAEFVKAHAGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +    L  +GQ+  P T  +C   + I  +++D     +       T   D     +  
Sbjct: 221 IR---NLSVYGQDSNPTTWKLCRMNLAIHGIDADLGEAAA------DTFFNDRHPTMKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF               K  +  R+  G P   + +  ++ H+        +  
Sbjct: 272 YILANPPFNLSGWGAD-------KLADDQRWKYGQPPAGNANFAWMQHMIFH----TSAK 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE  IR+ ++E+DL+E I+A+P  LF+ T I   LW L   
Sbjct: 321 GRIGMVLANGSL--ASQNGGEGAIRKAIVEDDLVEGIIAMPPQLFYTTQIPVSLWFLDRA 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  ++ GK+  I+A  + T +     + R +  +   +I D + + ENG           
Sbjct: 379 K--KQPGKMLFIDARHMGTMVSR---RLREMTKEDISKISDTFEAFENG-----TLEDEA 428

Query: 474 GYR-RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           G+   + V    +  +IL       L A+    +            L  M ++ + 
Sbjct: 429 GFCAAVPVEEISKQDYILTPGRYVGLAAEEDDCEPFEEKMDRLTSELSEMFKRSHE 484


>gi|325283711|ref|YP_004256252.1| type I restriction-modification system, M subunit [Deinococcus
           proteolyticus MRP]
 gi|324315520|gb|ADY26635.1| type I restriction-modification system, M subunit [Deinococcus
           proteolyticus MRP]
          Length = 505

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 106/538 (19%), Positives = 199/538 (36%), Gaps = 63/538 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + +   +W+  +   G    +++   +L    ++ +    +    A++ +Y      + 
Sbjct: 7   QSEINAILWRACDTFRGTVDPSEYKNYLLTMLFVKYISDVWQDHYDALKAEYG-----DD 61

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFD 119
           +     ++    F          L +    +NL   I       +         +F +  
Sbjct: 62  EDRIRRRLERDRFVMPEGTLFKDLYAQRGADNLGEIIDQALLAIEDANKGKLSGVFRNIS 121

Query: 120 FSSTI---ARLEKAGLLYKICKNF--SGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEG 173
           F+S        E+   L  + ++F    ++L P  + +  ++ N YE+LI RF +   + 
Sbjct: 122 FNSEAALGQTKERNIRLKNLLEDFHHPKLDLRPSRIGNLDIIGNAYEYLIGRFAAGAGKK 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP +V  L   L           +P     +YDPTCG+G  L             
Sbjct: 182 AGEFYTPPEVSDLMARL----------TAPQPGERIYDPTCGSGSLLIKCAQ-----NVQ 226

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289
            +       +GQE    T+A+    M +  ++          I+ G T+   L       
Sbjct: 227 AQGSQNYAIYGQEQNGSTYALARMNMFLHGVD-------DARIEWGDTIRNPLHLEDDKL 279

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   ++NPPF       +D     HK     RF  G+P    G   F+ H+   L   
Sbjct: 280 MKFEVVVANPPFSLDKWGAEDVSSDRHK-----RFERGIPPKGKGDYAFISHMLGSL--- 331

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G R  +V+    LF G A   E +IR  L+E  L++A++ LPT+LFF T I   L +
Sbjct: 332 AEVGSRMVVVVPHGVLFRGAA---EGKIRARLIEEGLLDAVIGLPTNLFFGTGIPAALLV 388

Query: 410 LSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
                  +R G   V  I+A+  + +    GK +  + +    +I+D Y +R    K++R
Sbjct: 389 FRKGAEAQRNGQADVLFIDASREFAA----GKNQNQLREADIVKIVDTYRARNGVDKYAR 444

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           ++           +  P  +    +   +           L    Q     + + + +
Sbjct: 445 VVPLDEIAANDYNLNIPRYVDTSEEAEPIDLGAVQTEINALESQWQQQRQKMAEYLRE 502


>gi|113866035|ref|YP_724524.1| Type I restriction-modification system methylation subunit
           [Ralstonia eutropha H16]
 gi|113524811|emb|CAJ91156.1| Type I restriction-modification system methylation subunit
           [Ralstonia eutropha H16]
          Length = 835

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 108/497 (21%), Positives = 188/497 (37%), Gaps = 65/497 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------L 60
           +   L   ++K A+ L G    ++F + I     L+R     +  R  V  +        
Sbjct: 4   TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVIAERMNAGESR 63

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASF---SDNAKAI 114
           A    + +LE + K A Y F+         L      N  ++L   ++     +     +
Sbjct: 64  ANAEKSAELERWYKGAEY-FWVPPRSRYKFLLDEAHQNVGDSLNKALSGIETANTKLYDV 122

Query: 115 FEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSE 172
            E  DF+  + + +   + L ++  +F    L  +       +   YE+LI  F     +
Sbjct: 123 LEHIDFTRKVGQSKIPDIKLRQLITHFGIYRLRNEDFEFPDLLGAAYEYLIGEFADSAGK 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR VV +   L+           P +   +YDP CG+GG L  A  ++ + G 
Sbjct: 183 KGGEFYTPRSVVRMMVRLI----------QPTLAHDIYDPCCGSGGMLIAAKEYIDEHGE 232

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
             +        GQE      ++    ML+  +        + N+Q   TL++        
Sbjct: 233 DGRK---ANLFGQEFNGTVWSIAKMNMLLHGI-------STANLQNEDTLAEPQHVEGGE 282

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVE--KEHKNGELGRFGPGLPK--ISDGSMLFLMHLAN 344
              F   L+NPPF   W   +   +           RF  G          ++FL H+  
Sbjct: 283 LMHFDRVLTNPPFSINWGNTEKNADGTPAWSPKFPERFRYGQVPLGAKKADLMFLQHMLA 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                   GG  A V+    LF G     E  IR  ++E+DL+EA++ +  +LF+ T I 
Sbjct: 343 ----VTRDGGMVATVMPHGVLFRGGE---EKAIRAGIVEDDLLEAVLGVAPNLFYGTGIP 395

Query: 405 TYLWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             + +L  R          K  ERRGKV  INA   +      G+ +  +  +   +I+ 
Sbjct: 396 ACILVLRQRVQNGANRVSGKPAERRGKVLFINADREFFE----GRAQNHLLPEHIEKIVT 451

Query: 455 IYVSRENGK-FSRMLDY 470
            +   +  + FS ++D 
Sbjct: 452 TFNEFKQVEGFSAIVDN 468


>gi|261368369|ref|ZP_05981252.1| type I restriction-modification system, M subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282569612|gb|EFB75147.1| type I restriction-modification system, M subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 509

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 108/493 (21%), Positives = 182/493 (36%), Gaps = 67/493 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +W   +   G    + +   IL    ++ L    +  R    ++Y      
Sbjct: 2   TTRNDIEQVLWSACDSFRGKIDSSRYKDYILSMLFVKYLSDVSKEKRQEYIQQYE----- 56

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--------SDNAKAIFED 117
                    ++   F    E +   L    + + +   I           S   + +F  
Sbjct: 57  GDMRRVERAMSRERFAMDEESTFDYLYDHRSESQIGQMINVALSRIEEYNSGKLRNVFRA 116

Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEG 173
            DF+S +      EK   L  + ++F  ++L P       ++ + YE++I  F S+  + 
Sbjct: 117 IDFNSQVDFGEVKEKNATLRNLLEDFHKLDLRPSQLGSADIIGDAYEYMIAMFASDAGKK 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  V  L  +L+           P     +YDPTCG+GG L  A   V      
Sbjct: 177 GGEFFTPSQVSELVASLV----------KPKENDRIYDPTCGSGGLLLKAYKKV------ 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289
                 +  +GQEL  +T A+C   M +  ++          I QG TLS          
Sbjct: 221 --PSGKVAIYGQELNAQTWALCTMNMFLHGVD-------DARIWQGDTLSNPQNIENDKL 271

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKE----------HKNGELGRFGPGLPKISDGSMLFL 339
            +F   ++NPPF           + E           +     RF  G+P  S G   F+
Sbjct: 272 MKFQVVVANPPFSLDKWDSGFLTDVEADSKGKKKMTAELDPYHRFDWGVPPTSKGDYAFV 331

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H+   L       GR AIVL    LF G     E +IRR L+E +L++A++ LP +LF+
Sbjct: 332 LHMLASL---DAENGRMAIVLPHGVLFRGA---SEGKIRRQLVEMNLLDAVIGLPANLFY 385

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I   + +    + +     V  I+A+      +  GK + I+ D    +I+  Y   
Sbjct: 386 GTGIPACILVFKKNRPQR---DVLFIDASGEGNFEK--GKNQNILRDTDIARIVSTYEKW 440

Query: 460 ENGKFSRMLDYRT 472
           E       L    
Sbjct: 441 ETVDKYSYLASLD 453


>gi|160894140|ref|ZP_02074918.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50]
 gi|156864173|gb|EDO57604.1| hypothetical protein CLOL250_01694 [Clostridium sp. L2-50]
          Length = 500

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 103/539 (19%), Positives = 189/539 (35%), Gaps = 60/539 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IW  A  L G+   +++  V+L    L+ +    +     + E+  
Sbjct: 1   MADKNTANIGFEKQIWDAACVLRGNMDASEYKNVVLGLIFLKYISDRFDDKYQELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +     +   F+  +    S + +           +N    I   +   K 
Sbjct: 59  ---GDGFEEDIDEYTSEGIFFVPAGARWSEIAAKAHTPEIGTVIDNAMRAIEKENKRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   + +   +
Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------KPFKGRVYDPCCGSGGMFVQSAKFIENHSGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E D     +       T   D     R  
Sbjct: 221 I---SNISIYGQDSNPTTWKMAQMNLAIRGIEPDLGTYAA------DTFLDDRHPTLRAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF               K  E  R+  G+P   + +  +L H+   L       
Sbjct: 272 YIMANPPFNLSDWGLD-------KLKEDQRWKYGIPPAGNANFAWLQHMIYHLAPA---- 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE EIR+ ++  DL+E IVA+PT LF+ T I   LW ++ +
Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQ 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  ++ G+   I+A  +   +     K R + DD  ++I D Y +  +G           
Sbjct: 379 K--KQPGRTLFIDARKMGKMVSR---KLRELTDDDIKKISDTYEAFVDG-----TLENVK 428

Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           GY  +       +  +IL       +E      +            L  M  + +    
Sbjct: 429 GYCAVTDTAEIEKQDYILTPGRYVGIEEQEADDEPFEEKMDRLTSELAEMFAKSHELED 487


>gi|291515049|emb|CBK64259.1| Type I restriction-modification system methyltransferase subunit
           [Alistipes shahii WAL 8301]
          Length = 517

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 107/548 (19%), Positives = 197/548 (35%), Gaps = 67/548 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IWK A+ + G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MAAMNTADIGFEKEIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFEAKYQQLVAEGE 60

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDN 110
            F     +  S     G     FY  +E     +             +N    I   +  
Sbjct: 61  GFEEDKDEYLSNKNEKGSYDPVFYVPAEARWEAIAIHAHSPEIGTIIDNAMRAIEKENKR 120

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K I         + +      L ++   F+ I +H       ++   YE+ + +F    
Sbjct: 121 LKDILPKNFARPELDK----RRLGEVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAE 176

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP  +V     +L           P   R +YDP CG+GG    +   + + 
Sbjct: 177 GKLAGEFYTPACIVKTLVNVL----------QPYKGR-VYDPCCGSGGMFVQSAQFIENH 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +      +  +GQ+  P T  +    + IR +E+D  +  +       T   D     
Sbjct: 226 SGNIN---NISVYGQDSNPTTWKMAQMNLAIRGIEADLGQYNA------DTFFNDCHPTL 276

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + ++NPPF               K  +  R+  G P   + +  ++ H+ + L    
Sbjct: 277 KADFVMANPPFNLSDWGAD-------KLADDVRWKYGTPPNGNANFAWIQHIIHHLAPT- 328

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GRA +VL++  L       GE EIRR L+E DL++ ++A+P  LF+ T I   +W  
Sbjct: 329 ---GRAGVVLANGSL--SSQSGGEGEIRRKLVEADLVDCVIAMPPQLFYTTQIPVSIWFF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND---------DQRRQILDIYVSREN 461
           +  K +  +GK   I+A +L T +     K R + D            ++I D Y +   
Sbjct: 384 NKNKQQ--KGKTLFIDARNLGTMVTR---KLRELTDSDTVDPIKRGDIQRIADTYNAYVA 438

Query: 462 GKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           GK          G+  +  V    +  FIL       + A     +      +     L 
Sbjct: 439 GKL-----ENEKGFCVVTSVAEIAKQDFILTPGRYVGIAAQEEDTEPFEEKMTRLTGELS 493

Query: 521 PMMQQIYP 528
            + ++ + 
Sbjct: 494 GLFEKSHE 501


>gi|205372127|ref|ZP_03224943.1| type I restriction-modification system DNA methylase [Bacillus
           coahuilensis m4-4]
          Length = 506

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 108/538 (20%), Positives = 198/538 (36%), Gaps = 62/538 (11%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A+ L G     ++  V+L    L+ +  A E   + +  +   +  S    E  + 
Sbjct: 12  LWSMADKLRGSMDSGEYKNVVLGLLFLKYVSDAFEERHAEL--EADEYADSEDRDEYVM- 68

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIARL 127
                F+   E   S +     +  +          I   + + + +         + ++
Sbjct: 69  --DNIFWVPKEARWSYIKDNAKKPEIGQIIDKAMIAIEKENASLQGVLPKDYARPALDKV 126

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L +    FS      ++    V+  +YE+ + +F S   +   +F TP  VV L 
Sbjct: 127 ----RLGETIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPSSVVRLL 182

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L                 +YDP CG+GG    +   V +          +  +GQE 
Sbjct: 183 VEML-----------EPYKGRIYDPCCGSGGMFVQSEKFVEEH---QGKLGDIAVYGQES 228

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
            P T  +C   + IR ++ +     +       T   DL  G +  Y L+NPPF  K   
Sbjct: 229 NPTTWKLCKMNLAIRGIDGNIGTHNA------DTFHNDLHKGLKADYILANPPFNIKDWG 282

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                    K  E  R+  G P   + +  ++ H+ +KL      G   A   + S   N
Sbjct: 283 GD-------KLREDVRWQYGTPPTGNANYAWIQHMISKLAPAGTAGFVLA---NGSMSSN 332

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR----GKVQ 423
               SGE EIR+ L+E DL+E IV LP  LF+ T I   +W +S  K++  +    G++ 
Sbjct: 333 ---TSGEGEIRKNLIEADLVECIVTLPGQLFYSTQIPVCIWFVSKNKSKTGKRTRNGEIL 389

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
            I+A  L   +    K      D    +I   + +          D +  G+ +  +L  
Sbjct: 390 FIDARKLGFMVDRTHK---EFTDVDIEKITKAFHTWRGTLGEAYEDVQ--GFCKAAMLEE 444

Query: 484 LRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           +R + +IL       LE        +   ++  + +   + +Q       E  ++ ++
Sbjct: 445 VRNNDYILTPGRYVGLEE---VEDDTEPFEAKIVRLTTELSEQFEKSKELEDQIRRAL 499


>gi|224369050|ref|YP_002603214.1| HsdM2 [Desulfobacterium autotrophicum HRM2]
 gi|223691767|gb|ACN15050.1| HsdM2 [Desulfobacterium autotrophicum HRM2]
          Length = 515

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 111/485 (22%), Positives = 200/485 (41%), Gaps = 60/485 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T    SL  ++W +A+ L G    +DF   I     L+R     +     + EK     
Sbjct: 1   MTLDLPSLETWLWGSADILRGSIDSSDFKNYIFGLLFLKRANDVFDEENEKLVEKENWDI 60

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSD---NAKAIFEDF 118
            +      +     + F+        T+   + N    ++  +A+  +   N + +    
Sbjct: 61  EAAASDPDY-----HKFFIPDTARWQTIIEKTENIGQAIDEALAAIEEENLNLEGVMTAV 115

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            F +    L  A LL ++  +F+   L   D     ++ + YE+LI+ F  +  +   +F
Sbjct: 116 HFGNK-DVLSDA-LLQRLLNHFNKYSLKNKDLYTPDLLGDAYEYLIKMFADDAGKKGGEF 173

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ VV L   L+           P    ++YDPTCG+GG L ++  ++A+ G      
Sbjct: 174 YTPKGVVRLIVQLI----------KPEPKNSVYDPTCGSGGMLVESARYIAEQGGKVGEL 223

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRF 292
                 GQE    T A+C   M++             +I++G TLS             F
Sbjct: 224 LDASLFGQEKNLGTWAICKINMILHN-------YSDADIKKGCTLSTPKHSTSDGELMIF 276

Query: 293 HYCLSNPPFGKKWEKDKDAVE--------------KEHKNGELGRFGPGLPKISDGSMLF 338
              ++NPPF +    D   V+               +  +   GRF  G+P      + F
Sbjct: 277 DRVIANPPFSQNKWWDAAEVDVKVNGNGKEMAVNYSKAVSDPYGRFQYGVPPRGYADLAF 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L H+ + L    N  G+  IVL    LF G     E +IR+ +L++D++EA+V LP+ LF
Sbjct: 337 LQHMISVL----NQNGKLGIVLPHGVLFRGG---SEGKIRKGILKDDILEAVVGLPSKLF 389

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T I   + I++  K    + KV  I+A+  +     EGK +  + ++  +++++ Y +
Sbjct: 390 YNTGIPASILIVNKSKPIHLKNKVIFIDASQDY----KEGKNQNRLEEEHVKKVVEAYDA 445

Query: 459 RENGK 463
            +   
Sbjct: 446 GQEID 450


>gi|317130967|ref|YP_004097249.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475915|gb|ADU32518.1| Site-specific DNA-methyltransferase (adenine-specific) [Bacillus
           cellulosilyticus DSM 2522]
          Length = 485

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 117/461 (25%), Positives = 197/461 (42%), Gaps = 46/461 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
               L +++W  A  L G    +DF   I P    +R+    +       E Y    G +
Sbjct: 2   KLEELESWLWGAANILRGPVDQSDFKSYIFPMLFFKRISDVYDEELQESMEIY----GED 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D E    +     +N        +G     +++     +  ++   IF D  +S+   +
Sbjct: 58  FDEEHRFIIPKGCHWNEVRSVTKNVGIK-ILSSIREIEKANPESLYGIFGDTQWSNK-DK 115

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    +L ++ ++FS   L    V    M   YE+LI++F    ++ A +F TPR++V L
Sbjct: 116 LTD-EILIELIEHFSQYNLGNKNVKSNTMGQAYEYLIKKFADVANKKAGEFYTPREIVKL 174

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T LL           P    ++YDP CGTGG L +A++H+ D     +       +GQE
Sbjct: 175 MTMLL----------DPEENESIYDPACGTGGMLLEAVDHLNDTSRDARTLK---LYGQE 221

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302
               T ++    + +  LE          I +  TL    +        F   ++NPPF 
Sbjct: 222 KNLTTSSIARMNLFLHGLE-------DFKIVRNDTLKNPAYFEEDKLMTFDCVIANPPFS 274

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K    +     E K+   GR   G+P  ++G   ++ H+   +E+     GR A+VLS 
Sbjct: 275 LKSWGYE-----EWKDDPYGRNIAGIPPKTNGDYAWVQHMIKSMEMYT---GRMAVVLSQ 326

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF   A   E +IRR LL+ DL++ ++ L  +LF+ TNI+  +      K  +R+GKV
Sbjct: 327 GVLFRAGA---EGKIRRELLQQDLLDTVIGLAPNLFYGTNISACILFFRKDKPVDRKGKV 383

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           Q I+A+ L+   RN    +  +  +   +I  +Y      K
Sbjct: 384 QFIDASQLFKKERN----QNTLLLEHVNEIFKLYNEYNTTK 420


>gi|15839312|ref|NP_300000.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9187843|gb|AAF85759.1|AE004078_11 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 424

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 119/430 (27%), Positives = 176/430 (40%), Gaps = 104/430 (24%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           M+   K++     G R A+V + S LF G AG GES IRRW+LEND +EAI+ALP ++F+
Sbjct: 1   MNKLQKMKHNTPLGSRIALVHNGSALFTGDAGQGESNIRRWVLENDWLEAIIALPLNIFY 60

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVS 458
            T IATY+W+L+N+K E RRGKVQLI+A+  +  +R N GKK   +      +ILD+Y+ 
Sbjct: 61  NTGIATYIWVLANKKAEARRGKVQLIDASQWFQPLRRNLGKKNCELGAADIARILDLYLG 120

Query: 459 R-ENGKFSRMLDYRTFGYRRIKV------------LRPLRMSFILDKTGL---------A 496
           + +    S+  D + FGY ++ +             R   + F   +  L          
Sbjct: 121 QTQEAAQSKWFDTQDFGYWKVTIERPLRLKSQLSDERIESLRFATGEEALRAEIYATHGE 180

Query: 497 RLEADITWRKLSPLHQ-------------------------------------------- 512
            L  +   RK +                                                
Sbjct: 181 ALYTEFAKRKPAIEAWLKGEDENEDDDSDSGDDNEALAARKAVPTKRRKTLLDASTWQRD 240

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
              +++ +   Q +    + +     S      K    + S S   A   A   +D  A 
Sbjct: 241 KALMEVARRAQQALGRAVFDDHNAFCSGFDAVCKAQDERLSASEKKAIYKAVSWRDAAAL 300

Query: 573 PVTDVNG---------------------------EWIPDTNLTEYENVPYLE--SIQDYF 603
           PV                                E+ PD+ L + E VP  E   I  +F
Sbjct: 301 PVIAKRSKLKAGDYFEPGFDGAYLETVGKDRFMVEYEPDSALRDTEQVPLQEPGGIDAFF 360

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
           VREV PH PDA+I             +VGYEI+F R+FY+  P R L DI A++  +E Q
Sbjct: 361 VREVLPHAPDAWIATDK--------TQVGYEISFARYFYKPVPLRTLADIRADILALEQQ 412

Query: 664 IATLLEEMAT 673
              LL ++  
Sbjct: 413 TEGLLHKIVG 422


>gi|56697572|ref|YP_167940.1| type I restriction-modification system, M subunit [Ruegeria
           pomeroyi DSS-3]
 gi|56679309|gb|AAV95975.1| type I restriction-modification system, M subunit [Ruegeria
           pomeroyi DSS-3]
          Length = 900

 Score =  339 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 192/496 (38%), Gaps = 67/496 (13%)

Query: 1   MTEFTG---SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MT  T    +   L   ++  A+ L G    ++F + I     L+R     E  R  + +
Sbjct: 1   MTGATLAKLTLEKLERHLFAAADILRGKMDASEFKEYIFGILFLKRCSDVFEQQREKILK 60

Query: 58  KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGST---NTRNNLESYIASF- 107
           +  A G S  +    ++ A +       F+         L +    N  N L   +    
Sbjct: 61  EQRALGRSETEA---LQRADHPSSYTKTFFVPPVARWDRLLNDVHANVANELNKALEGLE 117

Query: 108 SDN---AKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHL 162
           ++N    + +    +F+  +   E     L ++  +F+   L  +       +   YE+L
Sbjct: 118 NENHNALRGVLGHINFARKVGESEIPDERLRRLISHFNKYRLLDEDFEFPDLLGAAYEYL 177

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F     + A +F TPR VV L   +L           P    +LYDPTCG+GG L  
Sbjct: 178 ISEFADSAGKKAGEFYTPRGVVQLMVRIL----------DPQGGTSLYDPTCGSGGMLNQ 227

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +             L  +GQE      A+C   +L+  +          +I+ G TL
Sbjct: 228 GYEYALQHDG-----RRLSLYGQEDNGAVWAICRMNLLLHGI-------PDADIRNGDTL 275

Query: 283 SKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                       RF   ++NPPF + + K               RFG          ++F
Sbjct: 276 VDPKHIEDGHLMRFDRVIANPPFSQNYSKRGIQFGDRF------RFGWCPTTGKKADLMF 329

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             H+   L+      G+ A+V+    LF G     E +IR  LLE D IEA++ LP +LF
Sbjct: 330 AQHMLASLKQT----GKMAVVMPHGVLFRGGE---ERKIRIALLEEDCIEAVIGLPQNLF 382

Query: 399 FRTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + T I   + ++ +   K + R+GKV  INA         EG+ +  I+ +   +I+  Y
Sbjct: 383 YGTGIPACILVMRHPDGKPDARKGKVLFINADREH----REGRAQNFIDPEHIEKIVSAY 438

Query: 457 VSRENGK-FSRMLDYR 471
            +  +   F+ ++D  
Sbjct: 439 DAFADVPGFAAVIDNT 454


>gi|291288454|ref|YP_003505270.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885614|gb|ADD69314.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 525

 Score =  339 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 108/568 (19%), Positives = 203/568 (35%), Gaps = 74/568 (13%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +  GSA     + +W+ A+ L G+   +++  V+L    L+ +  + +     +    
Sbjct: 1   MAKQNGSANIGFEDKLWQTADKLRGNMDASEYKHVVLGLIFLKYISDSFQAKYDELLATQ 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAK 112
                     +    ++   F+  +E    +L +          L+     I   +   K
Sbjct: 61  E--TDYTDPEDRDEYMSDNVFWVPAEARWESLIAKAKTPEIGKVLDDAMIAIEKENKTLK 118

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            I         I +      L ++      I L         ++  +YE+ I  F S+  
Sbjct: 119 NILPKTYSRPEIDK----SRLGELLDIIGSIPLIDKAQSSKDLLGRVYEYFIGMFASKEG 174

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP+ VV L   ++                 +YDP CG+GG    +     + G
Sbjct: 175 RSGGEFYTPQSVVQLLVEMI-----------EPYKGRVYDPCCGSGGMFVQSEKFAEEHG 223

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +    +  +GQE    T  +    + IR +E++         +   T + DL    +
Sbjct: 224 GRLR---DISVYGQEYNATTWRLAKMNLAIRGIEANLGA------EWADTFTNDLHKDLK 274

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + L+NPPF              +K     R+  G P  ++ +  ++ H  + L     
Sbjct: 275 SDFILANPPFNMSDWGG-------NKLKNDVRWKYGTPPDNNANYAWIQHFIHHLAP--- 324

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL++  +      SGE EIR+ ++E DL++ ++ALP  LF+ T I   LW L+
Sbjct: 325 -NGVAGFVLANGSM--SSNTSGEGEIRKNIIEADLVDCMIALPGQLFYTTQIPVCLWFLA 381

Query: 412 NRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------- 460
             K      ER+G+   I+A  +           R++  +  ++I   Y +         
Sbjct: 382 RNKGKNGHRERKGETLFIDARKMGRLEDRV---HRVLVPEDIQKIASTYHAWRSNPDVIA 438

Query: 461 -NGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
             GK S        G+ + + +       ++L        E               + + 
Sbjct: 439 SEGKQSYE---DVAGFCKSVTLDTIKEHDYVLTPGRYVGAEEV-------EDDGEPFDEK 488

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAK 546
           +K +  Q+Y        +   IK N AK
Sbjct: 489 MKRLSTQLYSQMTEGEKLDAVIKENLAK 516


>gi|86742693|ref|YP_483093.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86569555|gb|ABD13364.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 816

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 108/473 (22%), Positives = 185/473 (39%), Gaps = 55/473 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++  A+ L G    ++F + I     L+R     E     +  + +A G S 
Sbjct: 52  TLPQLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEKRIIAQLIADGRSR 111

Query: 67  IDLES---FVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYIASF----SDNAKAIFE 116
            D E         G + Y   +   + L      N  + L   +       S   + + +
Sbjct: 112 TDAERQATLRARYGDTLYVPEKARWAWLRDQIHHNVGDALNKALELLEHHNSTALEGVVQ 171

Query: 117 DFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGA 174
             DF+ T+ +       L  +  +F+ + L  +       +   YE+LI  F     +  
Sbjct: 172 HIDFTRTVGQSSIPDRKLRDLIAHFNTVRLRNEDFEFPDLLGAAYEYLIGEFADSAGKKG 231

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV +  AL+           P     +YDP  G+GG L  A + VA+ G   
Sbjct: 232 GEFYTPRAVVRMMVALV----------DPKPGMEVYDPCSGSGGMLILARDWVAEHGGD- 280

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
             P  L   GQE      ++    +L+  +          +I+ G TL++ +       +
Sbjct: 281 --PRNLRLVGQEYNGGVWSISKMNLLLHGI-------PDADIRNGDTLAEPMHVSSGELE 331

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   LSNPPF + + ++    E         R+G          ++F+ H+   L    
Sbjct: 332 RFDRVLSNPPFSQNYSREGMDRENRF------RWGWAPEGGKKADLMFVQHMVAVLR--- 382

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G AA V+    LF G     E +IR  LL++D+IEA++ L  +LF+ T I   + +L
Sbjct: 383 -ANGVAATVMPHGVLFRGGT---ERDIRTALLDDDVIEAVIGLAPNLFYGTGIPACVLVL 438

Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
                K  ER GKV  +NA   +      G+ +  +  +   +I+  Y    +
Sbjct: 439 RAPGSKPAERAGKVLFVNADAEF----RAGRAQNYLMPEHVEKIVAAYHGFTD 487


>gi|160903325|ref|YP_001568906.1| N-6 DNA methylase [Petrotoga mobilis SJ95]
 gi|160360969|gb|ABX32583.1| N-6 DNA methylase [Petrotoga mobilis SJ95]
          Length = 511

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 116/547 (21%), Positives = 224/547 (40%), Gaps = 53/547 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +      +L N++W+ A  + G      +   ILP   L+RL    E     + E   
Sbjct: 1   MAQNNLDTKTLENWLWEAACKIRGPIDAPKYKDYILPLIFLKRLSDVFE---DELNELSE 57

Query: 61  AFGGSNIDLESFVKVAGY-SFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDNAKAI 114
            FG      E      G   FY   E   S +   +TN    L      IA ++   + +
Sbjct: 58  KFGSLETAEEFSRIDPGLVRFYLPPEARWSEVAKKTTNVGEYLTDAVRTIARYNPKLQGV 117

Query: 115 FEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +  DF++T    R+    +L  +        L    V   ++   YE+L+R+F     +
Sbjct: 118 IDIVDFNATAGGQRIISDDVLVALIDVLGRHRLGLKDVDPDILGRAYEYLLRKFAEGSGQ 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + +L           P     +YDP CG+GG L  A     +  S
Sbjct: 178 SAGEFYTPGEVAILMSKIL----------DPKPGNEVYDPCCGSGGLLIKAHLRFKEKYS 227

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----- 287
             +    L  +GQE+   T+A+    + I  +E          I  G T+++  F     
Sbjct: 228 EDRTKEPLKFYGQEILHSTYAMAKMNIFIHDME--------AQIALGDTMNRPAFTTSEG 279

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K+F    +NP + + + +        ++N    RF  G P  +     ++ H+   L+
Sbjct: 280 PLKKFDLVTANPMWNQTFSQSV------YENDPYNRFVFGYPPSNSADWGWIQHMFASLK 333

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                 G+ A+V+ +  +  G    G   E +IR+  +E DL+E+++ LP +LF+ T+  
Sbjct: 334 ND----GKMALVIDTGAVSRGSGNVGKNRERDIRKEFVEKDLVESVLLLPENLFYNTSAP 389

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463
             + +++  K  +R+ ++ LINA+ L+      G+ +  + D+   +I +IY++ +  + 
Sbjct: 390 GVIIVINKLKPAQRQDQILLINASKLYEK----GRPKNFLPDESVERIAEIYLNWKEEEG 445

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            S+++           +  P R      +     LE  +   K +   +    + L+ ++
Sbjct: 446 ISKIISKEEAAKNDYNL-SPSRYVAQNGEDETLPLEDAVVQLKEAEEERKEADEKLEIIL 504

Query: 524 QQIYPYG 530
           +++  + 
Sbjct: 505 KEMGLWN 511


>gi|253577074|ref|ZP_04854396.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251843568|gb|EES71594.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 507

 Score =  338 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 104/539 (19%), Positives = 197/539 (36%), Gaps = 61/539 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A+ L G     ++  V+L    L+ +  A E    A++ +           +   
Sbjct: 11  KLWSMADKLRGSMDAAEYKHVVLGLLFLKYVSDAFEEKYEALKNE-----PYADPEDRDE 65

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            VA   F+   E   S +     +       +N    I   + + K +         + +
Sbjct: 66  YVAENIFWVPKEARWSHIKDNAKKPEIGQTIDNAMIAIEKENPSLKGVLPKDYARPALDK 125

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L ++   FS      ++    V+  +YE+ + +F S   +   +F TP  VV L
Sbjct: 126 ----TRLGEVIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPNSVVRL 181

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V +          +  +GQE
Sbjct: 182 LVEMI-----------QPFKGRVYDPCCGSGGMFVQSEKFVEEHQGRIG---DIAIYGQE 227

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +C   + IR ++ +             T   DL    +  Y L+NPPF     
Sbjct: 228 SNPTTWKLCKMNLAIRGIDGNLGEH------HADTFHNDLHKNLKADYILANPPFNISDW 281

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +       +  E  R+  G+P   + +  ++ H+ NKL       G A  VL++  + 
Sbjct: 282 GGE-------RLTEDARWTYGVPPAGNANYAWIQHIVNKLAPS----GVAGFVLANGSMS 330

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
                + E EIR  L+  DL++ IV LP  LF+ T I   LW ++  K      +RRG++
Sbjct: 331 TS--TTAEFEIRSKLVNADLVDCIVTLPGQLFYSTQIPVCLWFIAKNKAPKGFRDRRGEI 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-IKVL 481
             I+A  +   +       R ++ +  R+I D Y +      +   +    G+ +  ++ 
Sbjct: 389 LFIDARKMGHMVDRT---HRELSTEDIRKIADTYHAWRGQAEAGTYEDV-KGFCKAAELA 444

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 +IL       +E      + S   +     +   + +Q       E  +++ +
Sbjct: 445 EVQEHEYILTPGRYVGIED---VEEDSEPFEDKMARLTAELGEQFAKSRQLEDEIRKRL 500


>gi|328951821|ref|YP_004369155.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452145|gb|AEB07974.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobacca acetoxidans DSM 11109]
          Length = 896

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 189/467 (40%), Gaps = 54/467 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +++W  A  L G     D+ + I P    +RL    +       E  +A   S 
Sbjct: 5   TQQQLESYLWGAATLLRGTIDAGDYKQFIFPLLFYKRLCDVFDE------ETQVALTESG 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFS----DNAKAIFEDFDF 120
            D E       + F    E     +     +    L + + S      D    IF D  +
Sbjct: 59  GDTEFAAYPENHRFQIPPEAHWQEMRQVAKDVGRTLHNALRSIETANPDKLYGIFGDAQW 118

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL  A +L  + ++F+ + L    +P+  +   YE+LI++F  +    A +F T 
Sbjct: 119 TNK-DRLPDA-MLRDLIEHFATLNLSLANLPEDELGQGYEYLIKKFADDSGHTAAEFYTN 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R +VHL T +L          +P    ++YDPTCG+GG L   + H+   G   +    +
Sbjct: 177 RTLVHLMTEML----------APQPGESVYDPTCGSGGMLLSCIAHLRRQGQEWR---NV 223

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE    T A+      +  +E         +I +G TL+   F      +RF   L
Sbjct: 224 RLYGQERNLMTSAIARMNCFLHGVE-------DFHIVRGDTLAHPRFVEGDRLQRFDVVL 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K         K       GR   G P        F  H+   L       GR 
Sbjct: 277 ANPPYSIKQWN-----RKAFAADPWGRNLFGTPPQGRADYAFWQHILCSLSPQT---GRC 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E+E+RR ++E DLIE ++ L  +LF+ + +   + +    K  
Sbjct: 329 AILFPHGVLFR----QEEAEMRRKIIEADLIECVLGLGPNLFYNSPMEACVVVCRMAKPR 384

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           ERRGK+ LINA +  T  R     +  + D   + IL  Y + ++  
Sbjct: 385 ERRGKILLINAVNEVTRERA----QSFLTDTHIQHILHAYQTFQDEP 427


>gi|257080965|ref|ZP_05575326.1| HsdM protein [Enterococcus faecalis E1Sol]
 gi|256988995|gb|EEU76297.1| HsdM protein [Enterococcus faecalis E1Sol]
          Length = 507

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 100/524 (19%), Positives = 190/524 (36%), Gaps = 58/524 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            + + +W  A+ L G    +++  V+L    L+ +  + E     + +    +       
Sbjct: 7   KIEDKLWAAADKLRGSMDASEYKNVVLGLIFLKYVSDSFEEKYEELTK--DEYADPEDKD 64

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
           E     A   F+  +E     +        +          I   + + K +        
Sbjct: 65  EYL---ADNIFWVPAEARWEKINRDAKTPKIGETIDEAMIAIEKENPSLKNVLPKNYSRP 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            + +      L +     + I++   +      +   YE+ + +F S   +G  +F TPR
Sbjct: 122 QLDK----TRLGETVDLITNIKVGDSENRKTDTLGRTYEYFLGKFASAEGKGGGEFYTPR 177

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L   +L                 +YDP CG+GG    +   V            + 
Sbjct: 178 SVVSLLVEML-----------EPYKGRIYDPCCGSGGMFIQSEKFVEKHQGKIG---DIS 223

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE  P T  +C   + IR ++ +     +       T   DL  G R  Y L+NPPF
Sbjct: 224 VYGQEFNPTTWQLCKMNLAIRGIDGNIGTHNA------DTFQNDLHKGLRADYILANPPF 277

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                  +       K  E  R+  G+P  ++ +  ++ H+ +KL       G A  VL+
Sbjct: 278 NISDWGQE-------KLLEDSRWKYGIPPKNNANYAWIQHMVSKLAPE----GTAGFVLA 326

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE---- 417
           +  +        E EIR+ L++NDL+E IV LP+ +F+ T I   LW ++  K ++    
Sbjct: 327 NGSMSTSTKE--EFEIRKNLIKNDLVECIVTLPSQMFYSTQIPVCLWFVTKSKAKKNERN 384

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
            +G++  I+A +         K     +++  +++ D Y + +     +  D   F    
Sbjct: 385 HQGEILFIDARNEGFMADRTTK---EFSEEDIKKVADAYHAWKGTNDKKYTDVAGFCSSA 441

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
             +       +IL       LE  +   +           +L  
Sbjct: 442 -SLETVKEQDYILTPGRYVGLEDKVEDSEPFEEKMERLTTLLSE 484


>gi|319951306|ref|ZP_08025140.1| putative type I restriction/modification system DNA methylase
           [Dietzia cinnamea P4]
 gi|319435021|gb|EFV90307.1| putative type I restriction/modification system DNA methylase
           [Dietzia cinnamea P4]
          Length = 535

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 109/553 (19%), Positives = 210/553 (37%), Gaps = 70/553 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L + +WK A+ L G    + +  V+L    L+ +  A E  R A+RE+  
Sbjct: 8   MPMEASTPKELKDTLWKAADKLRGSMDASQYKDVVLGLVFLKYVSDAFEERRDAIREEL- 66

Query: 61  AFGGSNIDLESFVKVAGY----SFYNTSEYSLSTL---------GSTNTRNNLESYIASF 107
           +        E+      Y     F+  +E     L          STN   ++   I + 
Sbjct: 67  SGEDEAYLAETLEDADEYLGSGVFWVPAEARWEYLSRHAKGIPASSTNDAQSIGELIDAA 126

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYE 160
                   E      T+  L      +   L ++   F+              ++  +YE
Sbjct: 127 MRALMQANES--LVGTLPVLFGRDNVEQRRLGELVDLFNAARFTGGGASKARDLLGEVYE 184

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + +F     +   +F TP  VV     +L                 +YDP CG+GG  
Sbjct: 185 YFLDKFAKAEGKRGGEFYTPPVVVRTLVEIL-----------EPHSGRVYDPCCGSGGMF 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 +     H + P  +  +GQEL   T  +    + I  ++S          + G 
Sbjct: 234 VQTEKFLE---GHKEDPTNVAVYGQELNERTWRMAKMNLAIHGIDSQGLGS-----RWGD 285

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           T ++D+    +  Y ++NPPF          ++   +  +  R+  G+P   + +  ++ 
Sbjct: 286 TFARDIHPDMQADYVMANPPFN---------IKDWARREDDPRWVYGVPPKRNANYAWMQ 336

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ +KL       G A +V+++  +      SGE +IR+ ++E D+++ IVALP  LF  
Sbjct: 337 HILSKLAP----NGEAGVVMANGTMTTS--TSGEGDIRKAMVEGDVVQCIVALPGQLFRA 390

Query: 401 TNIATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           T I   +W  +  KT       +RRG+V  I+A +L   I       R ++++  ++I +
Sbjct: 391 TGIPVCVWFFAKNKTAGKGGSVDRRGQVLFIDARELGHMIDRVE---RTLSEEDLQRIAE 447

Query: 455 IYVSRENGKFSRMLDYRTF-GYRRI-KVLRPLRMSFILDKTGLARL-EADITWRKLSPLH 511
            + S   G+ S + +Y    G+ +   +       + L       + EA+     +    
Sbjct: 448 TFRSWR-GRPSAVGEYEDVPGFCKSATLEEIKAAGYALTPGRYVGVPEAEEDLEPIDEKI 506

Query: 512 QSFWLDILKPMMQ 524
                ++   + +
Sbjct: 507 ARLTGELTAALDE 519


>gi|78358466|ref|YP_389915.1| type I restriction-modification system methylation subunit-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220871|gb|ABB40220.1| type I restriction-modification system methylation subunit-like
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 504

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/529 (21%), Positives = 198/529 (37%), Gaps = 55/529 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L +++W  A  L G     D+ + I P    +RL    +       E   A   S 
Sbjct: 8   SQSELESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            D E       + F    +                 ++ L +   +  D    +F D  +
Sbjct: 62  GDQEYAALPEQHRFQIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 121

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 122 TNK-DRLPDR-MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L
Sbjct: 180 RTVVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 226

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
              GQE    T A+    + +  +E          I +G TL+   F       +F   L
Sbjct: 227 RLFGQERNLLTSAIGRMNLFLHGIE-------DFRIVRGDTLANPAFVEGDRLMQFDVVL 279

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K                 GR   G P        F  H+   ++      GR 
Sbjct: 280 ANPPYSIKQWD-----RDAWSADPWGRNIYGTPPQGRADYAFWQHIIKSMKAKS---GRC 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       ES +R  L+ +D++E ++ L  +LF+ + +   + I    K +
Sbjct: 332 AILFPHGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 387

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY 475
           ERR KV  INA +  T  R     +  + DD  ++I+  Y +  +   F+R++       
Sbjct: 388 ERRNKVLFINAVNEVTRERA----QSFLTDDHIQRIVAAYQAFGDEDGFARVVGNDEIRE 443

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +   +  PL +               ++ ++     Q   + + + M  
Sbjct: 444 KASNLSIPLYVRAENGNGNGNGSTETVSLKQAIANWQESSMALRESMDG 492


>gi|71275992|ref|ZP_00652274.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71899062|ref|ZP_00681227.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
 gi|71163225|gb|EAO12945.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Dixon]
 gi|71731175|gb|EAO33241.1| N-6 DNA methylase:Type I restriction-modification system, M subunit
           [Xylella fastidiosa Ann-1]
          Length = 524

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 109/574 (18%), Positives = 221/574 (38%), Gaps = 74/574 (12%)

Query: 1   MTEFTGSAAS-------LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M     +  +           ++K A+ L G+ + +D+  V L    L+ +  A E   S
Sbjct: 1   MAHRKTTTKNGNGGTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHS 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
            +  +      +    E         F+   +   S L +   ++ + + I         
Sbjct: 61  ELLAE--DPQAAEDKDEYLAH---NVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEK 115

Query: 108 -SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRR 165
            + + K +         + ++    +L ++    SGI L+ +      ++  +YE+ + +
Sbjct: 116 DNPSLKHVLPKDYARPALNKV----MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQ 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TPR VV +   +L                 +YDP CG+GG    +  
Sbjct: 172 FAGAEGKRGGEFYTPRSVVRVLVQML-----------EPYSGRVYDPCCGSGGMFVQSEK 220

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLS 283
            V + G        +  +GQE    T  +    + +R ++SD        I+  +  +  
Sbjct: 221 FVLEHGGRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFH 269

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     +  Y L+NPPF               +  E  R+  G+P   + +  +L H+ 
Sbjct: 270 NDALRDLKADYILANPPFNISDWGGD-------RLREDVRWKFGVPPAGNANYAWLQHIY 322

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L       G A +VL++  +      SGE EIR  ++E D+++ +VA+P  LF+ T I
Sbjct: 323 HHLAP----NGTAGVVLANGSM--SSNHSGEGEIRTHMIEADIVDCMVAMPGQLFYSTQI 376

Query: 404 ATYLWILSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
              LW L+  K       +RRG+V L++A  L   +      RR + D+Q ++I D Y +
Sbjct: 377 PACLWFLARNKNPGKGLRDRRGQVLLMDARALGVLVDRT---RRELTDEQIQKIADTYHA 433

Query: 459 RENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               + +        G+ +   +    +  ++L       +     + K +   +     
Sbjct: 434 WRGEQGAADYADVA-GFCKSATLEDIRKHGYVLTPGRYVGI---KGFVKDNESFEERMTR 489

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
           +   + +Q+      ++ ++E +K      L++K
Sbjct: 490 LTTELGEQLAESATFQTTMREQLKLIGFPILELK 523


>gi|163737287|ref|ZP_02144705.1| Type I restriction-modification system methylation subunit
           [Phaeobacter gallaeciensis BS107]
 gi|161389891|gb|EDQ14242.1| Type I restriction-modification system methylation subunit
           [Phaeobacter gallaeciensis BS107]
          Length = 821

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/494 (21%), Positives = 188/494 (38%), Gaps = 62/494 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-----YLA 61
           + A L   ++  A+ L G    ++F + I     L+R     E  R  V +K        
Sbjct: 4   TLAQLERHLFSAADILRGKMDASEFKEYIFGMLFLKRCSDVFEQARLEVVQKRIASGVAP 63

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIAS-FSDNA--KAIF 115
              +             +F+   +     L      N  + L   +    S+N   + + 
Sbjct: 64  EQAAEEAENKVWYGRSGTFWVPPQSRFGHLVDEAHENIGDKLNKALGGVESENIALEGVL 123

Query: 116 EDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEG 173
           +  DF+  + + + +   L ++  +F  I L  +       +   YE+LI  F     + 
Sbjct: 124 DHIDFTRKVGQSKISDQKLRQLINHFGEIRLRNEDFEFPDLLGAAYEYLIGEFADSAGKK 183

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV +   LL           P +   +YDP CG+GG L  A +++ + G  
Sbjct: 184 GGEFYTPRSVVRMMVRLL----------KPTLEHDIYDPCCGSGGMLIAAKDYIDEHGQD 233

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289
            +        GQE      ++    ML+  +        S +++   TL +         
Sbjct: 234 GR---RANLFGQENSGTVWSIAKMNMLLHGIN-------SADLRNEDTLGEPQHVEDGEL 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEH--KNGELGRFGPGLP-KISDGSMLFLMHLANKL 346
           +RF   L+NPPF   W         E+  +     RF   +P       ++FL H+    
Sbjct: 284 RRFDRILTNPPFSINWGSKDKDRSGEYTWQPKFRERFFHEVPLGSKKADLMFLQHMLA-- 341

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GG  A V+    LF G     E +IR+ ++E+D +EA++ L   LF+ T I   
Sbjct: 342 --VSRDGGMIATVMPHGVLFRGG---DEGKIRQKIIESDQVEAVIGLGPQLFYGTGIPAC 396

Query: 407 LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + +L  R          K  ER+GKV  INA   +      G+ +  +  +   +I+  +
Sbjct: 397 VIVLRQRVHHGANLVSGKPAERQGKVLFINADREYFE----GRAQNHLLPEHIEKIVTTF 452

Query: 457 VS-RENGKFSRMLD 469
              R    FS ++D
Sbjct: 453 EEYRAIPGFSAIVD 466


>gi|183597752|ref|ZP_02959245.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827]
 gi|188023032|gb|EDU61072.1| hypothetical protein PROSTU_01053 [Providencia stuartii ATCC 25827]
          Length = 504

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/548 (19%), Positives = 201/548 (36%), Gaps = 61/548 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     + + +   +W   +   G    + +   IL    L+ +    +     ++ +Y 
Sbjct: 1   MPHTLINQSEINKAVWNACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKVEELKAEYG 60

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    ++ +SF    G SF++  E        T     L + I   +   K +F+D
Sbjct: 61  DIPELIAEMLESQSFKIPTGSSFWDLYEARFEAGNGTRIDTALHA-IEEANTKLKGVFQD 119

Query: 118 FDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSE 172
             F+        +K  +L  + ++F    L+          V+ N YE+LI+ F +   +
Sbjct: 120 ISFNTDKLGDEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + +L          +P    T+ DP CG+G  L      V     
Sbjct: 180 SAGEFYTPAEVSDLLSIIL----------APQEGDTICDPACGSGSLLMKCGKQVQ---K 226

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
           +         +GQE    T ++    M +   +       +  I+ G T+          
Sbjct: 227 NFNGSKKYALYGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDANG 279

Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F    +NPPF       +D      +N   GRF  G+P  + G   F+ H+   L+
Sbjct: 280 GLLHFDVVTANPPFSLDKWGHED-----AENDHFGRFRRGVPPKTKGDYAFISHMIETLK 334

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR  +V+    LF     S E +IR+ L+E +L++A++ LP  LFF T I   +
Sbjct: 335 PQT---GRMGVVVPHGVLFR---ASSEGKIRQQLIEENLLDAVIGLPEKLFFGTGIPAAI 388

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            I    K ++    V  I+A+  +      GK + ++ ++  ++I+D Y +RE+      
Sbjct: 389 LIFKKHKDDK---NVLFIDASREF----KSGKNQNVLTEENIQKIVDTYKARESVDKYAY 441

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           L           +       F L+         +     L  + +       +    +  
Sbjct: 442 LA---------TLEEIAENDFNLNIPRYVDTFEEEEEIDLMAVREERLALQNELADLEAE 492

Query: 528 PYGWAESF 535
             G+ +  
Sbjct: 493 MEGYLKEL 500


>gi|283795955|ref|ZP_06345108.1| ribosomal protein L11 [Clostridium sp. M62/1]
 gi|291076600|gb|EFE13964.1| ribosomal protein L11 [Clostridium sp. M62/1]
 gi|295090949|emb|CBK77056.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 500

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 106/539 (19%), Positives = 193/539 (35%), Gaps = 60/539 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +A      IW  A  L G+   +++  V+L    L+ +    +    A+ E+  
Sbjct: 1   MPDKNTAAIGFEKQIWDAACVLRGNMDASEYKNVVLGLIFLKYISDRFDEKYKALVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +     +   F+  +      + +           ++    I   +   K 
Sbjct: 59  ---GDGFEEDIDEYTSEGIFFVPAGARWRDIAAKAHTPEIGTVIDDAMRAIEKENKRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   V +   +
Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------KPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E D     +       T  KD     R  
Sbjct: 221 I---SNISIYGQDSNPTTWKLAQMNLAIRGIEPDLGPYAA------DTFLKDCHPTLRAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF               K  E  R+  G P   + +  +L H+   L       
Sbjct: 272 YIMANPPFNLSDWGLD-------KLKEDQRWKYGTPPAGNANFAWLQHMIYHLAPA---- 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE EIR+ ++  DL+E IVA+PT LF+ T I   LW ++ +
Sbjct: 321 GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVECIVAMPTQLFYTTQIPVSLWFINKQ 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  ++ GK   I+A  + T +     K R + D    +I D Y +  +G     L+    
Sbjct: 379 K--KQSGKTLFIDARKMGTMVNR---KLRELTDADINKISDTYEAFVDG----TLENI-K 428

Query: 474 GYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           G+  +       + ++IL       +E      +      +     L  M  + +    
Sbjct: 429 GFCAVADTAEIEKQNYILTPGRYVGIEEQEEDDEPFEEKMTRLTSELSNMFAKSHELED 487


>gi|253576200|ref|ZP_04853531.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251844327|gb|EES72344.1| type I restriction-modification system DNA methylase [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 507

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 105/539 (19%), Positives = 196/539 (36%), Gaps = 61/539 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W  A+ L G     ++  V L    L+ +  A E    A++ +           +   
Sbjct: 11  KLWSMADKLRGSMDAAEYKHVALGLLFLKYVSDAFEEKYEALKNE-----PYADPEDRDE 65

Query: 74  KVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            VA   F+   E   S +             +N    I   + + K +         + +
Sbjct: 66  YVAENIFWVPKEARWSHIKDNAKKPEIGQIIDNAMIAIEKENPSLKGVLPKDYARPALDK 125

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L ++   FS      ++    V+  +YE+ + +F S   +   +F TP  VV L
Sbjct: 126 ----TRLGEVIDLFSFKVGDEESRSKDVLGRVYEYFLSKFASAEGKNGGEFYTPNSVVRL 181

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V +          +  +GQE
Sbjct: 182 LVEMI-----------QPFKGRVYDPCCGSGGMFVQSEKFVEEHQGRIG---DIAVYGQE 227

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +C   + IR ++ +             T   DL    +  Y L+NPPF     
Sbjct: 228 SNPTTWKLCKMNLAIRGIDGNLGEH------HADTFHNDLHKNLKADYILANPPFNISDW 281

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +       +  +  R+  G+P   + +  ++ H+ NKL       G A  VL++  + 
Sbjct: 282 GGE-------RLTDDTRWTYGVPPAGNANYAWIQHIVNKLAPS----GVAGFVLANGSMS 330

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
                + E EIR  L+  DL++ IV LP  LF+ T I   LW ++  K      +RRG++
Sbjct: 331 TS--TTAEFEIRSKLVNADLVDCIVTLPGQLFYSTQIPVCLWFIAKNKAPKGFRDRRGEI 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVL 481
             I+A  +   +       R ++ +  R+I D Y +     +     D + F  +  K+ 
Sbjct: 389 LFIDARKMGHMVDRT---HRELSTEDIRKIADTYHAWRGQAEVGAYEDVKGFC-KAAKLA 444

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 +IL       +E      + S   +     + + + +Q       E  +++ +
Sbjct: 445 DVQEHEYILTPGRYVGIED---VEEDSEPFEDKMARLTEELAEQFAKSRQLEDEIRKRL 500


>gi|189467605|ref|ZP_03016390.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM
           17393]
 gi|189435869|gb|EDV04854.1| hypothetical protein BACINT_03995 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 109/539 (20%), Positives = 201/539 (37%), Gaps = 70/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IWK A+ L G+   +++  V+L    L+ +    E    A+ ++  
Sbjct: 1   MAKTNTAEIGFEKDIWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFEAKYQALIDE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +     +   F+   E   S +             +N    I   +   K 
Sbjct: 59  ---GDGFEEDKDEYTSENIFFVPQEARWSMIAKAAHAPEIGTVIDNAMRLIEKENTRLKG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I++        ++   YE+ + +F     + 
Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L                 +YDP CG+GG    +   +     +
Sbjct: 172 AGEFYTPACIVRTLVEVL-----------QPYSGRVYDPACGSGGMFVQSAKFIERHQGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQ+  P T  +    + IR +E+D  +  +       T   D     +  
Sbjct: 221 IN---NISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFDDQHPTLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF               K  +  R+  G+P   + +  +L H+ + L       
Sbjct: 272 YILANPPFNLSDWGVD-------KLQDDVRWKFGIPPAGNANFAWLQHMIHHLSPK---- 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE +IR  +++ DLIE IVALP+ LF+ T I   LW L+  
Sbjct: 321 GRIGMVLANGSL--SSQSGGEGKIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNRA 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND------DQRRQILDIYVSRENGKFSRM 467
           K  ++ GK+  ++A ++ T +     K R ++D         ++I D + +   G     
Sbjct: 379 K--KQTGKILFVDARNMGTMVTR---KLRELSDSEEGEKGDIQKIADTFHAFNEG----T 429

Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTG---LARLEAD-ITWRKLSPLHQSFWLDILKP 521
           LD    G+  I  +    +  +IL       +A +E D   +++      S   D+   
Sbjct: 430 LDN-EKGFCAIATLEDVAKQDYILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLFAQ 487


>gi|307150615|ref|YP_003885999.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822]
 gi|306980843|gb|ADN12724.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7822]
          Length = 526

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 106/543 (19%), Positives = 185/543 (34%), Gaps = 69/543 (12%)

Query: 2   TEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TE T S  +   L + +WK A+ L G     ++  V+L    L+ +  A       +   
Sbjct: 7   TETTASNGNTVKLEDKLWKAADKLRGHLDAAEYKHVVLGLIFLKYISDAFGELYDKL--- 63

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
             +        +     A + F+   E   S L +     ++          I   + + 
Sbjct: 64  --STDEYADPEDKDEYTAEHIFWVPVEARWSHLQAKAKTPDIGKFVDEAMEAIEKENPSL 121

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEV 170
           K +         + +     LL ++      I L         ++  +YE+ + +F S  
Sbjct: 122 KGVLPKDYGKPALDK----RLLGELIDLIGTIGLGDAQNRSQDILGRVYEYFLGQFASAE 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TPR VV L   +L                 +YDP CG+GG    +   V   
Sbjct: 178 GKKGGQFYTPRCVVELLVDML-----------EPYKGRVYDPCCGSGGMFVQSEKFVEAH 226

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +C   + IR ++ +         +   +   DL    
Sbjct: 227 GGKIG---DISIYGQESNPTTWKLCKMNLAIRGIDGNLGA------KNADSFRNDLHKEL 277

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF       +          E  R+  G P + + +  ++  +   L    
Sbjct: 278 KADYILANPPFNVSDWGGQH-------LREDSRWIYGTPPVGNANYAWIQQIITHLAPNG 330

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G   A   + S   N    SGE EIR+ L+E DL++ +VALP  LF+ T I   LW L
Sbjct: 331 IAGFVLA---NGSMSSN---QSGEGEIRKALVEADLVDCMVALPGQLFYNTQIPACLWFL 384

Query: 411 SNRKTEER------------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +  K +              +G+   I+A  L   I       R +  ++  +I + Y +
Sbjct: 385 TRNKGQSPLTLLNKGGMRQRKGETLFIDARKLGVLIDRV---HRELTSEEITRIAETYHN 441

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
                     D   F  +   +       ++L        E      +           +
Sbjct: 442 WRGSGKGEYEDVPGFC-KSAALEDIRGHGYVLTPGRYVGAEEVDDDDEPFEEKMERLTKL 500

Query: 519 LKP 521
           L+ 
Sbjct: 501 LEE 503


>gi|304569843|ref|NP_942538.2| hypothetical protein slr6095 [Synechocystis sp. PCC 6803]
          Length = 512

 Score =  336 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 108/473 (22%), Positives = 184/473 (38%), Gaps = 57/473 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGG 64
           +   L   ++K A+ L G    ++F + I     L+R     E     +           
Sbjct: 5   TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRASDVFEQQYQQIIRDNLAKGRSE 64

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSD---NAKAIFEDF 118
                 +    +   F+       +T+      N  N L   +A+  +       +    
Sbjct: 65  EEAKQRAERASSYQDFFVPERARWATIRDELHDNVGNGLNKALAALEESNVALSGVLGHI 124

Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAED 176
           DF+  + +   +   L ++  +F+   L  +       +   YE+LI  F     +   +
Sbjct: 125 DFNRKVGKTTLSDTKLRELIFHFNKYRLLNEDFVFPDLLGAAYEYLIAEFADSAGKKGGE 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPRDVV L   L+           P    ++YDP  G+GG L  A  ++ +CG   + 
Sbjct: 185 FYTPRDVVQLMVRLV----------KPAAGMSIYDPCVGSGGMLIQAKQYIEECGGDSR- 233

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRF 292
              L   GQ+      A+C   ML+  ++          I+   TL           +RF
Sbjct: 234 --NLSLCGQDNNGGVWAICKINMLLHGIK-------DARIENEDTLQNPRHIVDGELERF 284

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLANKLELPP 350
              LSNPPF + +EK               RF  G    S     ++F  H+ + L++  
Sbjct: 285 DRVLSNPPFSQNYEKTN--------LEFKNRFNHGWCPESGKKADLMFAQHMLSVLKV-- 334

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG  A V+    LF G     E +IR+ L+E D IEAI+ LP +LF+ T I   + ++
Sbjct: 335 --GGIVATVMPHGVLFRGG---DEQKIRKSLIEKDQIEAIIGLPPNLFYGTGIPACILVM 389

Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
                K  ERRGKV  INA   + +    G+ +  +  +   +I++ + +  +
Sbjct: 390 RRAGEKLPERRGKVLFINADAEFYA----GRAQNYLKPEHIEKIVNAFEAFVD 438


>gi|167904493|ref|ZP_02491698.1| Type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei NCTC 13177]
          Length = 832

 Score =  336 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 181/496 (36%), Gaps = 65/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV--REKYLAFGG 64
           +   L   ++K A+ L G    ++F + I     L+R     +  R  V   E       
Sbjct: 4   TLPQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFDQRREEVVGLEMQAGKSE 63

Query: 65  SNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-------FSDNAKAI 114
           +        S       SF+  S+     L +     N+  Y+          + +   +
Sbjct: 64  AEARQSAENSRWYKKEGSFWVPSQSRYEFLINDA-HQNVGDYLNKALTGIETANTSLYDV 122

Query: 115 FEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSE 172
            E  DF+  + + +   + L ++  +F+   L  +       +   YE+LI  F     +
Sbjct: 123 LEHIDFTRKVGQSKIPDIKLRQLITHFAKHRLRNEDFEFPDLLGAAYEYLIGEFADSAGK 182

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR VV +   L+           P +   +YDP CG+GG L  A  ++ + G 
Sbjct: 183 KGGEFYTPRSVVRMMVRLV----------KPELKHDVYDPCCGSGGMLIAAKEYIDEHGE 232

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
             +        GQE      ++    ML+  +        + N+Q   TL+         
Sbjct: 233 DGRK---ANLFGQEFNGTVWSIAKMNMLLHGI-------STTNLQNDDTLADPQHVEGGE 282

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVE--KEHKNGELGRFGPGLPK--ISDGSMLFLMHLAN 344
              F   ++NPPF   W   +   +           RF  G          ++FL H+  
Sbjct: 283 LMHFDRVITNPPFSLPWGNTERNTDGTPAWAPKFPERFKYGQVPLGAKKADLMFLQHMLA 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                   GG  A V+    LF G     E  IR  ++++DL+EA++ +  +LF+ T I 
Sbjct: 343 ----VTRDGGMVATVMPHGVLFRGGE---ERAIRAGIIDDDLLEAVIGVAPNLFYGTGIP 395

Query: 405 TYLWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             + +L  R          K  +R+GKV  INA   +      G+ +  +  +   +I  
Sbjct: 396 ACILVLRQRVQNGANRVSGKPVKRQGKVLFINADREYFE----GRAQNHLLPEHIEKIAT 451

Query: 455 IYVSRENGK-FSRMLD 469
            +        FS ++D
Sbjct: 452 TFDEFRAVPGFSAIVD 467


>gi|302343960|ref|YP_003808489.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfarculus baarsii DSM 2075]
 gi|301640573|gb|ADK85895.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfarculus baarsii DSM 2075]
          Length = 528

 Score =  336 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 117/562 (20%), Positives = 205/562 (36%), Gaps = 58/562 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L +++W  A  L G     D+ + I P    +RL    +       E   A   S 
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            D E       + F    +                 ++ L +   +  D    +F D  +
Sbjct: 57  GDQEYAALPEQHLFQIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 117 TNK-DRLPDR-MLRELIEHFSSQTLSLANCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L
Sbjct: 175 RTVVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
              GQE    T A+    + +  +E          I +G TL+   F       +F   L
Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGIE-------DFRIVRGDTLANPAFVEGDRLMQFDVVL 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K                 GR   G P        F  H+   ++      GR 
Sbjct: 275 ANPPYSIKQWD-----RDAWSADPWGRNIYGTPPQGRADYAFWQHIIKSMKAKS---GRC 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       ES +R  L+ +D++E ++ L  +LF+ + +   + I    K +
Sbjct: 327 AILFPHGVLFRNE----ESAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY 475
           ERR KV  INA +  T  R     +  + +D  ++I+  Y    +   F+R++       
Sbjct: 383 ERRNKVLFINALNEVTRERA----QSFLTNDHIQRIVSAYQDFCDEDGFARVVSNDEVRE 438

Query: 476 RRIKVLRPLRMSFI---LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           +   +  PL +       +  G A   +                + +  + + +     A
Sbjct: 439 KASNLSIPLYVRADNGNCNGNGAAETVSLKQAIANWQESSMALRESMDGLFEVLEKGLSA 498

Query: 533 ESFVKESIKSNEAKTLKVKASK 554
           +      +K++     +   S 
Sbjct: 499 DDADGCRLKTDSENLRESAQSA 520


>gi|198284500|ref|YP_002220821.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667614|ref|YP_002427163.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198249021|gb|ACH84614.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519827|gb|ACK80413.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 525

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 103/488 (21%), Positives = 187/488 (38%), Gaps = 67/488 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           TE T ++ SL + +W  A+ L G     D+  V+L    L+ +          +  +   
Sbjct: 10  TEDT-TSQSLESKLWATADKLRGHLDAADYKHVVLGLIFLKYISDRFAQRHEEIIREEAG 68

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
              +    E     A   F+  +    + + +   + ++   I          + + K I
Sbjct: 69  TYAAEDRDEY---TAEGVFWVPASSRWAVVQTAAKQPDIGKRIDGAMTDIERENPHLKNI 125

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173
                   T+ +      L ++      I L          +  +YE+ + RF S   + 
Sbjct: 126 LPKGYARPTLDQ----RRLGELVDLIGTIGLGTAEHQARDTLGRVYEYFLGRFASAEGKR 181

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   +   G  
Sbjct: 182 GGEFYTPASVVRTLVTMLAPYKG-----------RIYDPCCGSGGMFVQSEKFIEAHGGK 230

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +G+E  P T  + +  + IR +E+D   + +       T  KDL    R  
Sbjct: 231 VG---DISVYGEESNPNTWKLALMNLAIRGIEADLGPEAA------DTFHKDLHPDLRAD 281

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF                  +  R+  G+P   + +  ++ H+ + L      G
Sbjct: 282 YILANPPFNISDWGGD-------LLRDDKRWQYGIPPTGNANFAWVQHMVHHLAPYGIAG 334

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
              A   + S   N    SGE EIR+ L+E DL++ +VA+P  LF+ T I   LW L+  
Sbjct: 335 FVLA---NGSMSSN---TSGEGEIRKNLIEADLVDCMVAMPGQLFYSTQIPVCLWFLAKN 388

Query: 414 KTE----------ERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE-- 460
           + +          ER G+V  I+A ++ + + R      R + D+  ++I D Y +    
Sbjct: 389 RDDGRGMTGKELFERTGEVLFIDARNMGFMADRT----HRELTDEDIQKIADTYHNWRGD 444

Query: 461 -NGKFSRM 467
            +G+++ +
Sbjct: 445 GDGEYADI 452


>gi|224538865|ref|ZP_03679404.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519519|gb|EEF88624.1| hypothetical protein BACCELL_03761 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 528

 Score =  336 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 106/539 (19%), Positives = 198/539 (36%), Gaps = 70/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IWK A+ L G+   +++  V+L    L+ +    E    A+  +  
Sbjct: 22  MAKTNTAEIGFEKEIWKAADLLRGNMDASEYKSVVLGLIFLKYISDRFETKYQALIAE-- 79

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +     +   F+   E   S +  T          +N    I   +   K 
Sbjct: 80  ---GDGFEEDKDEYTSENIFFVPQEARWSMIAKTAHAPEIGTVIDNAMRLIEKENTRLKG 136

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I++        ++   YE+ + +F     + 
Sbjct: 137 ILPKNFARPELDK----RRLGDVVDLFTNIQMREHGDTKDILGRAYEYCLSKFAEAEGKL 192

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L                 +YDP CG+GG    +   +     +
Sbjct: 193 AGEFYTPACIVRTLVEVL-----------QPYSGRVYDPACGSGGMFVQSAKFIERHQGN 241

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +   GQ+  P T  +    + IR +E+D  +  +       T   D     +  
Sbjct: 242 IN---SISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFDDQHPTLKAD 292

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF               K     R+  G+P   + +  +L H+ + L       
Sbjct: 293 YILANPPFNLSDWGVD-------KLQGDVRWKFGIPPAGNANFAWLQHMIHHLSPK---- 341

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE +IR  +++ DL+E IVALP+ LF+ T I   LW L+  
Sbjct: 342 GRIGMVLANGSL--SSQSGGEGKIRENIIKADLVEGIVALPSQLFYTTGIPVSLWFLNRT 399

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND------DQRRQILDIYVSRENGKFSRM 467
           K  ++ GK+  ++A ++ T +     K R ++D         ++I + + +   G     
Sbjct: 400 K--KQTGKILFVDARNMGTMVTR---KLRELSDSEEGEKGDIQKIANTFHAFNEG----- 449

Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTG---LARLEAD-ITWRKLSPLHQSFWLDILKP 521
                 G+  I  +    +  +IL       +A +E D   +++      S   D+   
Sbjct: 450 TLENEKGFCAIATLEDVAKQDYILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLFAQ 508


>gi|94970784|ref|YP_592832.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345]
 gi|94552834|gb|ABF42758.1| N-6 DNA methylase [Candidatus Koribacter versatilis Ellin345]
          Length = 511

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 103/554 (18%), Positives = 191/554 (34%), Gaps = 59/554 (10%)

Query: 5   TGSAASL-ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            G+ + +    +W  A+ L  +    ++  V+L    L+ +  A E   + + +K     
Sbjct: 3   NGTISEIDEAKLWSMADALRNNMDAAEYKHVVLGLIFLKYISDAFEAKHAELEQKMDQGA 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFE 116
                 E     A   F+   E   + L     +       ++  + I   + + K +  
Sbjct: 63  DPEDPDEY---RAVSIFWVPREARWAHLKDNAPQPKIGTLVDDAMAAIERDNQSLKGVLP 119

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                  + +      L ++    SGI    P      ++  +YE+ + +F S   +   
Sbjct: 120 KDYARPGLDK----QRLGQLINLVSGIGLGTPAARAKDILGRVYEYFLAQFASAEGKKGG 175

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP  VV +   +L                 +YDP CG+GG    +   +        
Sbjct: 176 QFYTPSHVVRILVEMLAPYKG-----------RVYDPCCGSGGMFVSSEKFIEAHS---G 221

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T  +    + IR ++          IQ G T   D     +    
Sbjct: 222 KLGDISIYGQESNYTTWRLAKMNLAIRGID--------AQIQHGDTFHNDRHPDLKADCV 273

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPF     + +          E  R+  G+P   + +  ++ H    L       G 
Sbjct: 274 LANPPFNDSDWRGE-------LLKEDKRWVFGVPPAGNANFAWIQHFIYHLAPT----GL 322

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  VL++  +      SGE EIR+ ++E+DL++ +VALP  LF+ T I   LW ++  K+
Sbjct: 323 AGFVLANGSMSTN--TSGEGEIRKGIIESDLVDCMVALPGQLFYSTGIPVCLWFVARSKS 380

Query: 416 ----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                 RRG+   I+A    + I       R ++D    +I   Y +    + +      
Sbjct: 381 SGRFRNRRGETLFIDARKFGSLIDRV---HRELSDADVAKIAGTYHAWRGDEGAGGYADV 437

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK-PMMQQIYPYG 530
               +   +    + S IL        +      +          D L+  + +     G
Sbjct: 438 AGFCKAATLDDIRKHSHILTPGRYVGAKETEDDGEPIEQKMKTLTDALRMQLAESRKLEG 497

Query: 531 WAESFVKESIKSNE 544
                +KE      
Sbjct: 498 EITGNLKEIGYELA 511


>gi|94986116|ref|YP_605480.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
 gi|94556397|gb|ABF46311.1| Type I restriction-modification system DNA methylase [Deinococcus
           geothermalis DSM 11300]
          Length = 517

 Score =  336 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 110/561 (19%), Positives = 210/561 (37%), Gaps = 70/561 (12%)

Query: 1   MTEFTGSAAS-----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M +   + ++         ++K A+ L G+ + +D+  V L    L+ +  A E    A+
Sbjct: 1   MKKNGTTNSNGGNLGFEADLFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHQAL 60

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFS 108
             +           +    +A   F+   E   S L +   R  +          I   +
Sbjct: 61  LAE-----DPRAAEDRDEYLADNVFWVPKEARWSHLRANARRPEIGLLIDEAMRAIEKEN 115

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167
           ++ K +         + ++    +L ++    SGI L  +      ++  +YE+ + +F 
Sbjct: 116 ESLKGVLPKDYARPALNKV----MLGELIDLISGIALGEEGDRSKDILGRVYEYFLGQFA 171

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TPR VV +   +L                 +YDP CG+GG    +   V
Sbjct: 172 GAEGKRGGEFYTPRSVVRVLVEML-----------EPYHGRVYDPCCGSGGMFVQSEKFV 220

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKD 285
            + G        +  +GQE    T  +C   + +R +++D        I+  +  +  KD
Sbjct: 221 QEHGGRIG---DIAIYGQESNYTTWRLCKMNLAVRGIDAD--------IRWNNEGSFHKD 269

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +  + L+NPPF       +       +  E  R+  G+P + + +  +L H+ + 
Sbjct: 270 ELRDLKADFILANPPFNISDWGGE-------RLREDVRWSFGVPPVGNANYAWLQHIHHH 322

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       G A +VL++  +      SGE EIR+ ++E D+++ +VALP  LF+ T I  
Sbjct: 323 LAP----NGTAGVVLANGSM--SSNQSGEGEIRKAMVEADVVDCMVALPGQLFYSTQIPA 376

Query: 406 YLWILSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            LW L+  K       +RRG+V  I+A  L   +      RR + D + ++I D Y +  
Sbjct: 377 CLWFLARNKNPGKGLRDRRGQVLFIDARKLGVLVDRT---RRELTDAEIQKIADTYHAWR 433

Query: 461 -NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRKLSPLHQSFWLDI 518
                    D   F  +   +    +  F+L         + +                 
Sbjct: 434 GEPDAGEYQDVPGFC-KSATLEEIRKHGFVLTPGRYVGAAQQEDDGEPFEEKMARLAAQW 492

Query: 519 LKPMMQQIYPYGWAESFVKES 539
            +            E+ +KE 
Sbjct: 493 REQRAAAAKLDAAIEANLKEL 513


>gi|88811760|ref|ZP_01127014.1| type I restriction system adenine methylase [Nitrococcus mobilis
           Nb-231]
 gi|88791151|gb|EAR22264.1| type I restriction system adenine methylase [Nitrococcus mobilis
           Nb-231]
          Length = 522

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 114/550 (20%), Positives = 210/550 (38%), Gaps = 75/550 (13%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
            + +G+  +L   + +W  A+ L G+ + +D+  V L    L+ +  A E  R A+  + 
Sbjct: 15  AQKSGNGGNLGFESMLWAAADKLRGNMEPSDYKHVALGLIFLKYISDAFEVKREALLAE- 73

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAK 112
                     E     A   F+   E   S L +   +  +          I + + + K
Sbjct: 74  -DLADPEDPEEYL---AENVFWVPKEARWSHLQANAKQATIGKLVDDAMLAIEAKNASLK 129

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVS 171
            +         + ++    +L ++    SGI +  D      ++  +YE+ +  F     
Sbjct: 130 GVLPKDYARPALNKV----MLGELIDLISGIGMGEDADRSKDILGRVYEYFLGGFAGAEG 185

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV L   +L                 +YDP CG+GG    +   V + G
Sbjct: 186 KRGGEFYTPRSVVQLLVEML-----------EPYKGRVYDPCCGSGGMFVQSERFVEEHG 234

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTG 289
                   +  +GQE    T  +C   + +R +++D        I+  +  +  KD    
Sbjct: 235 GRIG---DIAIYGQESNYTTWRLCKMNLAVRGIDAD--------IRWNNEGSFHKDELKD 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            R  Y L+NPPF       +       +  E  R+  G+P   + +  +L H+ + L   
Sbjct: 284 LRADYVLANPPFNISDWGGE-------RLREDARWKYGVPPAGNANYAWLQHIYHHLAPD 336

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A +VL+   +      SGE +IRR L+E D+++ ++ LP  LF+   I   LW 
Sbjct: 337 ----GSAGVVLAKGSM--SSTQSGEGDIRRSLVEGDVVDCMIDLPGQLFYSVQIPACLWF 390

Query: 410 LSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----- 459
           L+  K       +RRG++  I+A  L   +      R+  +++   +I   Y S      
Sbjct: 391 LARNKNPGNRWRDRRGEILFIDARKLGQMVDRT---RKEFSEEDIAKIAGSYHSWRGAGP 447

Query: 460 -ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL--HQSFW 515
            E+   F + +           +L P R      +     L  +  +  L  +   Q   
Sbjct: 448 YEDVPGFCKAVTLDEIREHSH-ILTPGRYVGAAAEEA-DNLSFEEQFADLKEILAEQFAH 505

Query: 516 LDILKPMMQQ 525
            + L  ++QQ
Sbjct: 506 AEELSALIQQ 515


>gi|328950634|ref|YP_004367969.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450958|gb|AEB11859.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Marinithermus hydrothermalis DSM 14884]
          Length = 524

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 116/553 (20%), Positives = 209/553 (37%), Gaps = 69/553 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L  ++W+ A  + G      F   ILP   L+RL    E     + E+Y     +   
Sbjct: 6   NTLETWLWEAACAIRGPVDAPKFKDYILPLVFLKRLSDVFEDELERLAEEYGDRETAEQI 65

Query: 69  LESFVKVAG--------YSFYNTSEYSLSTLGS---TNTRNNLESYIAS---FSDNAKAI 114
           +E   +  G          FY         + +         L   + +    +   + +
Sbjct: 66  IED-ERAGGTISRGRGSVRFYIPENARWPRIRAHGRAGLGQFLTDAVRAVARENPRLQGV 124

Query: 115 FEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +  DF++T    R+     L ++    S   L    V   ++   YE+L+R+F     +
Sbjct: 125 IDLVDFNATAAGQRIVPDEYLARLVDVLSHHRLGLQDVEPDILGRAYEYLLRKFAEGQGQ 184

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TPR+V  L   +L           P    T+YDP CG+GG L      + +   
Sbjct: 185 SAGEFYTPREVAVLMARIL----------EPEPGMTVYDPACGSGGLLIKCHLRLLETHG 234

Query: 233 HHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +               +GQE+ P T A+     +I  +E+D        I+ G T+  
Sbjct: 235 EQQNGHRCLPPEHAPLQLYGQEINPATFAMARMNAVIHDMEAD--------IRLGDTMRN 286

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             F        RF   ++NP + + +  +       ++N    RF  G P  S     +L
Sbjct: 287 PAFKDASGRLMRFDLVVANPMWNQIFPTEV------YENDPYERFAFGTPPASTADWGWL 340

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTD 396
            H+   L    +  GR A+VL +  +  G    G   E +IR+  +E DLIEA+V LP +
Sbjct: 341 QHMLASL----SDTGRMAVVLDTGAVSRGSGTQGSNRERDIRKAFVEADLIEAVVLLPEN 396

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T     + +++ RK     G++ LINA+ L+      G+ +  + ++    I  +Y
Sbjct: 397 LFYNTTAPGIILVVNRRK--RHPGEILLINASKLFAK----GRPKNYLAEEHIETIARLY 450

Query: 457 VSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
              +     S ++           +  P R     D+  +  LE  +   + +   ++  
Sbjct: 451 HEWKAEEGLSAIITNDEAARNDYNL-SPSRYVASNDQEEVLPLEEAVVLLREAEEERADA 509

Query: 516 LDILKPMMQQIYP 528
              L   +  +  
Sbjct: 510 DRKLNEALHILGM 522


>gi|58583080|ref|YP_202096.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58427674|gb|AAW76711.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 645

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 114/547 (20%), Positives = 218/547 (39%), Gaps = 78/547 (14%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              S + L  A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+  +   
Sbjct: 133 KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 189

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
                   +    +A   F+   +   S L +   ++++ + I          +++ K +
Sbjct: 190 --DPPAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 247

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+     P  V+  +YE+ + +F     + 
Sbjct: 248 LPKDYARPALNKV----MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKR 303

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VVH    ++                 +YDP CG+GG    +   V + G  
Sbjct: 304 GGEFYTPRSVVHTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSEKFVNEHGGR 352

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKR 291
                 +  +GQE    T  +C   + +R ++SD        I+  +  +  KD     +
Sbjct: 353 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLK 401

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + L+NPPF       +       +  +  R+  G P + + +  +L H+ + L     
Sbjct: 402 ADFILANPPFNISDWGGE-------RLRDDVRWAFGPPPVGNANYAWLQHIVHHLSPH-- 452

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A +VL++  +      SGE +IR+ ++E  +++ +VALP  LF+ T I   LWIL+
Sbjct: 453 --GFAGVVLANGSM--SSQQSGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLWILA 508

Query: 412 NR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461
                      K  +RRG++  I+A ++ T +      RR ++D +  +I   Y +    
Sbjct: 509 KDRSNGLVLQSKLRDRRGEILFIDARNMGTLVDRT---RRELSDAEVARIAATYHAWRGE 565

Query: 462 GKFSRMLDYRTF-------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                  D   F         R+   VL P R      +       A    ++L+ L + 
Sbjct: 566 QDAGDYADIAGFCKSAPLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAQK-MQRLATLWRE 624

Query: 514 FWLDILK 520
              +  K
Sbjct: 625 QQQEAAK 631


>gi|88707233|ref|ZP_01104920.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
 gi|88698526|gb|EAQ95658.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
          Length = 497

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 122/520 (23%), Positives = 214/520 (41%), Gaps = 49/520 (9%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +++L + +W+ A  L G     TD+   ILP    +R+    +   +   E +     
Sbjct: 2   SQSSNLKSTLWEAANTLRGSAVDRTDWKGYILPLLFFKRISDCWDEETAEASELFGDPDP 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           S        +V     +N    +   +G+   ++ ++    +  D    IF   D+ +  
Sbjct: 62  SLYQEMHRFQVPEGCHWNDVRGTAQNVGA-ALKHAMQEIERANPDTLYRIFGAADWGNKE 120

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDV 183
              ++  LL  + + FS I+L  ++V   ++ + YEHL+ +F          +F TPR V
Sbjct: 121 KFTDE--LLKDLIEGFSSIKLGNNSVDTDILGDAYEHLVGKFADVNRRNKAGEFYTPRSV 178

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V +   +L           P    ++YDP CGTGG L  A++HV   G   +       +
Sbjct: 179 VRMMVEIL----------DPKEGESIYDPACGTGGMLLAAIDHVKRNGGDPRTFFGK-IY 227

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSN 298
           GQE    T +V    +++  +E          + +  TL    FT        F   ++N
Sbjct: 228 GQEKNLTTSSVARMNLVLHGIE-------DFQVAREDTLRDPAFTDGAGGLATFDCVIAN 280

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K         +  +N   GR   G+P  S G   F+ H+   +      G R A+
Sbjct: 281 PPFSLKEWG-----REVWENDPWGRAQYGMPPDSYGDYAFVQHMIASM--AQGRGSRMAV 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL    LF     S E +IR  LL  DLIEA++ L  +LF+ T +A  + IL  +K  ER
Sbjct: 334 VLPQGALFR---KSAEGKIREVLLREDLIEAVIGLAPNLFYGTGLAGCVVILRRKKPAER 390

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK---FSRMLDYRTFGY 475
           + KV +I+A+ L+      G+ +  ++     QI+  + + E+ +       +D      
Sbjct: 391 KNKVLIIDASSLFRK----GRAQNFLDSKHGEQIVKWFQAFEDVEDRAKVVAVDEIKDEG 446

Query: 476 RRIKVLR----PLRMSFILDKTGLARLEADITWRKLSPLH 511
             + + R    P+     L    +A  +  +T  + +  H
Sbjct: 447 WTLNISRYVLPPIGEDIPLLPEAVAAFKEALTEARSAEDH 486


>gi|152991448|ref|YP_001357170.1| type I restriction-modification system, M subunit [Nitratiruptor
           sp. SB155-2]
 gi|151423309|dbj|BAF70813.1| type I restriction-modification system, M subunit [Nitratiruptor
           sp. SB155-2]
          Length = 510

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 191/534 (35%), Gaps = 53/534 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  S    +WK A+ L  +    ++  V+L    LR +  A E       ++  
Sbjct: 1   MAKKKQNGDSFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISEAFEDLYEK-LKRGE 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
                    +     A   F+   E   S L             +N    I   + + K 
Sbjct: 60  GEYAGADPEDIDEYRAENVFFIPPEARWSHLKEKAKDPEIGKIIDNAMELIEKKNPSLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172
           +         I  +     L  +   FS I ++        ++ +++E+ +  F     +
Sbjct: 120 VLPKVYARGNIDPIA----LGGLIDLFSNIAINEAKEKTSDILGHVFEYFLGEFALAEGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR VV L   +L                 ++DP CG+GG    +   V +   
Sbjct: 176 KGGQFYTPRSVVELLVEML-----------EPYRGRVFDPCCGSGGMFVQSEKFVQEHQG 224

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +GQE    T  +C   + IR ++S   R   +      +   D     + 
Sbjct: 225 KIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVRWNPEG-----SFLNDAHKDLKS 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +          E  R+  G+P   + +  ++ H    L      
Sbjct: 277 DFVIANPPFNDSDWSGE-------LLREDARWKYGVPPAGNANYAWIQHFIFHLAPH--- 326

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL+   L        E EIR+ ++E+D+++ IV LP  LF  T I   LW L  
Sbjct: 327 -GKAGFVLAKGALTT--KQKDEYEIRKNMIEDDIVDCIVNLPAKLFLNTQIPASLWFLRK 383

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            KT   +G++  I+A D+   I     ++RI+  +  ++I D Y + +    S       
Sbjct: 384 NKTTR-KGQILFIDARDMGKLINR---RQRILTPEDIKKIADTYHTWQKEDSSYE---DI 436

Query: 473 FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            G+ + + V     + ++L       L  +          +    + L  ++++
Sbjct: 437 KGFCKSVSVDEVKGLDYVLTPGRYVGLAEEEDDFDFEERFEKLKQEFLSQLVEE 490


>gi|48243660|gb|AAT40796.1| putative type I restriction-modification system methyltransferase
           protein [Haemophilus influenzae]
          Length = 398

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 127/405 (31%), Positives = 190/405 (46%), Gaps = 53/405 (13%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNIHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            N +         +    +   G+E   ET+A+C + M+I+        D  +NI+ GST
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIKG-------DNPENIKVGST 294

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           L+ D F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 295 LATDSFQGNHFDFMLSNPPYGKSWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNVETLDAT 353

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAG 371
           P+ SDG +LFLM + +K++ P +   G R A V + S LF G AG
Sbjct: 354 PRSSDGQLLFLMEMVSKMKSPNDNKIGSRVASVHNGSSLFTGDAG 398


>gi|288573656|ref|ZP_06392013.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569397|gb|EFC90954.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 527

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 116/540 (21%), Positives = 203/540 (37%), Gaps = 62/540 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L +++W  A  L G     D+ + I P    +RL    +       E   A   S 
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALKESG 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            D E       + F+   +                 ++ L +   +  D    +F D  +
Sbjct: 57  GDQEYAALPEQHRFHIPEDAHWKATRTKVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 117 TNK-DRLPDH-MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L
Sbjct: 175 RTVVHLMTEIL----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
              GQE    T A+    + +  +E          I +G TL    F       +F   L
Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGVE-------DFRIVRGDTLGNPAFVEGDRLMQFDVVL 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K                 GR   G P        F  H+   ++      GR 
Sbjct: 275 ANPPYSIKQWD-----RDAWSADPWGRSLYGTPPQGRADYAFWQHIIKSMKAKS---GRC 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +
Sbjct: 327 AILFPHGVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGY 475
           ERR KV  INA +  T  R     +  + +D  ++I+  Y +  +   F+R++       
Sbjct: 383 ERRNKVLFINAVNEVTRERA----QSFLTNDHIQRIVAAYKAFGDEDGFARVVCNDEVRE 438

Query: 476 RRIKVLRPLRMSFI-------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           +   +  PL +               ++  +A   W++ S   +    D+ + + Q+   
Sbjct: 439 KGSNLSIPLYVRSDNGNGNSNGAAETVSLKQAISNWQQSSMELRESMDDLFEVLEQRTDH 498


>gi|116754513|ref|YP_843631.1| N-6 DNA methylase [Methanosaeta thermophila PT]
 gi|116665964|gb|ABK14991.1| N-6 DNA methylase [Methanosaeta thermophila PT]
          Length = 522

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/550 (21%), Positives = 211/550 (38%), Gaps = 66/550 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG----- 63
           ++L  ++W  A  + G      F   ILP   L+RL    E     + E++ +       
Sbjct: 6   STLETWLWDAACAIRGPLDAPKFKDYILPLVFLKRLSDVFEDELDRLAEEFGSRDVATRI 65

Query: 64  -GSNIDLESFVKVAGY-SFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDNAKAIFE 116
                +  +     G   FY       S +   +T     L   + +    +   + + +
Sbjct: 66  VEDERERGTIANSRGSVRFYIPERARWSNIRKQTTGLGQYLTDAVRAVARENPRLRGVID 125

Query: 117 DFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             DF++T     +     L K+    S   L    V   ++   YE+L+R+F     + A
Sbjct: 126 LVDFNATAAGQHIVPDEYLAKLVNVLSRHRLGLRDVEPDILGRAYEYLLRKFAEGQGQSA 185

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR+V  L   +L           P    T+YDP CG+GG L      + +     
Sbjct: 186 GEFYTPREVAVLMARIL----------EPEPGMTVYDPACGSGGLLIKCHLRLLETRGEQ 235

Query: 235 KIPPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +                GQE+ P T A+     +I  +E+D        I+ G T+    
Sbjct: 236 QNGHRRLPPEHAPLRLFGQEINPTTFAMARMNAVIHDMEAD--------IRLGDTMRNPA 287

Query: 287 FTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           F         F    +NP + + +  +       ++N    RF  G+P  S     +L H
Sbjct: 288 FRDATGRLMTFDLVTANPMWNQDFPTEV------YENDPYERFRFGVPPSSSADWGWLQH 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLF 398
           +   L    N  GR A+VL +  +  G    G   E +IRR  +ENDLIEA + LP ++F
Sbjct: 342 MLASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRRAFVENDLIEAAILLPENMF 397

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T    ++ +++ RK   R G++ LINA+ L+      G+ +  + D+    I  +Y  
Sbjct: 398 YNTTAPGFIIVVNRRK--RRPGEILLINASKLFAK----GRPKNYLADEHIETIARLYHD 451

Query: 459 -RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            R     + ++           +  P R     DK  +  LE  +   + +   ++    
Sbjct: 452 WRAEEGLAAVITNEEAARNDYNL-SPSRYVASNDKEEVLALEDAVVLLREAEEERAQADR 510

Query: 518 ILKPMMQQIY 527
            L  +++ + 
Sbjct: 511 KLNEVLKALG 520


>gi|312876125|ref|ZP_07736113.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797111|gb|EFR13452.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 599

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 108/487 (22%), Positives = 204/487 (41%), Gaps = 52/487 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++K A+ L G    +++ + I     L+      E  R  +++++ 
Sbjct: 1   MAGDKITLRQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELKDRFK 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAK 112
           A G S   +   ++     G +F+   +     +     +  N L   +++    +    
Sbjct: 61  AMGFSEKQIHELLEDPSSYGDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELD 120

Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170
            + +  DF++       K   L  +  +F+  +L P        +   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQEL   T ++C   M++  +          +I+    L+  +F   
Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIN-------DAHIENEDVLTTPMFLEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              KRF   L+NPPF + + +     E+  K G     G          ++FL H+   L
Sbjct: 281 GYIKRFDRILANPPFSENYTRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   
Sbjct: 335 KDD----GVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +++  K E+ + K+  INA   +      G+ +  +  +   +I+ ++  ++   K+S
Sbjct: 388 IIVINKNKPEQLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFDEKKEIPKYS 443

Query: 466 RMLDYRT 472
           R++D + 
Sbjct: 444 RLVDIKE 450


>gi|239994326|ref|ZP_04714850.1| hypothetical protein AmacA2_07556 [Alteromonas macleodii ATCC
           27126]
          Length = 457

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 139/455 (30%), Positives = 204/455 (44%), Gaps = 124/455 (27%)

Query: 341 HLANKLELPPN------GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           HL +K+    +       GGR  I+L+ SPLF G AGSGESEIRR++LE DL+EAIV+LP
Sbjct: 1   HLISKMRDTQSVDGVISNGGRIGIILNGSPLFTGGAGSGESEIRRYILEADLLEAIVSLP 60

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN-EGKKRRIINDDQRRQIL 453
           TD+F+ T IATY+W+L+N+K +ER+GKVQLI+ ++L+  +R   G KR  ++DD  + I 
Sbjct: 61  TDMFYNTGIATYVWVLTNKKKDERKGKVQLIDGSNLYGKMRKSLGSKRNQMSDDDIKTIT 120

Query: 454 DIYVSRE-----------------------------NGKFSRMLDYRTFGYRRIKVLRPL 484
             +   E                                 S++ +   FGYRRI + RPL
Sbjct: 121 RAFGDFEVIDAREIDKPTEQKSNRGRQSANAKQEAPKTFASKIFNTYEFGYRRITIERPL 180

Query: 485 RMSFILDKTGLARLEA---------------------------------------DITWR 505
           R+S  +    +  L                                            + 
Sbjct: 181 RLSSQITDEAIESLRFAPKPFNMVMPRIYSEFGSAWNEENYGDLSQVQVEVRALIKAEFS 240

Query: 506 KLSP------------LHQSFWLDILKPMMQQIYP------YGWAESFVKESIKSNEAKT 547
           +L              L Q   ++ ++ +  ++            +    E   +   K 
Sbjct: 241 ELKEANIKDILSSKLWLFQKALMEKVQELQSKLADVAGGRDKRSDDFNQFEIDYNKALKA 300

Query: 548 LKVKASKSFIVAFINAFGRKDPRADPVTDV----------------------NGEWIP-- 583
           L +K        F++A   K+P A+ V D                        G+ +   
Sbjct: 301 LYIKFDAKEKKQFLDAVTTKNPDAECVVDKALKSDKKPLYGAYEYKGPVSKWKGKVVSFK 360

Query: 584 -DTNLTEYENVPYLES------IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEIN 636
            D +L + ENVP   S      I+ YF++EV+PHV DA+I+    DEKD EIG VGYEI 
Sbjct: 361 QDGDLRDNENVPLNPSKITSDLIESYFLKEVAPHVSDAWINADKRDEKDGEIGIVGYEIP 420

Query: 637 FNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           FNR FY YQP R L++ID +L  V A+I  LL+E+
Sbjct: 421 FNRHFYVYQPPRDLREIDKDLDAVSAEILQLLQEV 455


>gi|330721465|gb|EGG99515.1| Type I restriction-modification system2C DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC2047]
          Length = 550

 Score =  335 bits (859), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/461 (23%), Positives = 184/461 (39%), Gaps = 52/461 (11%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY---SFYN 82
              +++   I     L+RL  A E  +  V + Y+  G +                +FY 
Sbjct: 1   MDASEYKDYIFGMMFLKRLSDAFEEAQEGVVQYYIDKGKTEAQARELADDEDEYDKTFYI 60

Query: 83  T--SEYSLSTLGSTNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
              + + +      +    L      I  ++ + + +    DF +   +L     L  + 
Sbjct: 61  PPIARWDVIKDLKHDIGAELNKATEAIEEYNPSLEGVLVSIDF-NIKNKLSDKK-LRDLL 118

Query: 138 KNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +FS   L         +    YE+LI+ F     +   +F TP +VV L  +LL     
Sbjct: 119 SHFSQHRLRNSDFDRPDLLGTAYEYLIKMFADSAGKKGGEFYTPSEVVQLLVSLL----- 173

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                 P     +YDPT G+GG L    N++A  G   + P  L   GQE+   T A+C 
Sbjct: 174 -----KPHAGMRIYDPTVGSGGMLVQTRNYLASHG---ENPSNLSLFGQEMNLNTWAICK 225

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGKKWEKDKDAV 312
             M +  +        S +I++G TL +   T       F   ++NPPF  K        
Sbjct: 226 MNMFLHGV-------YSADIRKGDTLREPQHTQGGGLMSFDRVIANPPFSLK-----KWG 273

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           ++E      GRF  G P    G + F+ H+   L    N  G   +V+    LF G    
Sbjct: 274 KEEADADNYGRFPYGTPPKDAGDLAFVQHMIASL----NAEGMMGVVMPHGELFRGA--- 326

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  IR+ +L +DL+EA++ LP+ LF+ T I   L I++  K  +R+GKV  IN+   + 
Sbjct: 327 SEKTIRQGILNDDLLEAVIGLPSALFYGTGIPACLLIINKDKPADRKGKVLFINSELEYQ 386

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
                GK +  +      +I+  +      K +S+++    
Sbjct: 387 E----GKNQNKLRQQDVEKIVQTFDDYGEIKRYSKVVTLAD 423


>gi|260905939|ref|ZP_05914261.1| type I restriction-modification system, M subunit [Brevibacterium
           linens BL2]
          Length = 506

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 110/470 (23%), Positives = 189/470 (40%), Gaps = 53/470 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLAF 62
              +   L + +W  A  L G     D+   + P    + +    +     AVR+     
Sbjct: 9   KKLTQRELESTLWAAANALRGPVDAGDYKAYVFPVFFFKWISDTYDYWHTQAVRDWGDEL 68

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASF---SDNAKAIFED 117
                  +         F   +      + ST  N    L + +      +     +F D
Sbjct: 69  TDEIEASDY------QPFIVPTGCRWKDVHSTVVNVGVALNTALQKVEQTNPELVGVFGD 122

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            ++++   RL +   L  +   F  + L PD V   ++   YE+L+R F     + A +F
Sbjct: 123 INWANK-DRLPE-NALTDLLDAFHSVRLDPDHVEGDMLGAAYEYLLREFAEASGKKAGEF 180

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR VVHL   +L           P    ++ DP CG+ G L + +N V + G     P
Sbjct: 181 FTPRHVVHLLVKIL----------QPQSGDSIIDPACGSAGMLVETVNEVKNSGGD---P 227

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293
             L  HGQE+   T A+    + +  LE         +I++G T S+  F        F+
Sbjct: 228 RTLSLHGQEVNLTTSAIAKMNLYLHGLE-------DFSIKRGDTFSEPRFVTNGKLDAFN 280

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF  +             N    R   G+P   +G   ++ H+ + ++      
Sbjct: 281 VVIANPPFSLQNWGASSWS-----NDSYNRAFCGVPPAKNGDFAWIQHMISSMKEDT--- 332

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +V+    LF G     E  IR+ LLE DL+EA+++LP +LF+ T+I   L I   +
Sbjct: 333 GRVGVVMPHGVLFRGGK---EGAIRQCLLEKDLLEAVISLPKNLFYSTSIPVCLLIFRAK 389

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           K+ ERR +V  ++A+  +    + G  +  +++     I   Y   E+  
Sbjct: 390 KSAERRSRVLFVDASSRF----SAGTNQNTMSESDIDTIFAAYTRGEDID 435


>gi|84624919|ref|YP_452291.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368859|dbj|BAE70017.1| type I restriction system adenine methylase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 604

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 114/547 (20%), Positives = 218/547 (39%), Gaps = 78/547 (14%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              S + L  A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+  +   
Sbjct: 92  KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 148

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
                   +    +A   F+   +   S L +   ++++ + I          +++ K +
Sbjct: 149 --DPPAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 206

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+     P  V+  +YE+ + +F     + 
Sbjct: 207 LPKDYARPALNKV----MLGELIDLISGIALNDKGGKPKDVLGRVYEYFLGQFAGAEGKR 262

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VVH    ++                 +YDP CG+GG    +   V + G  
Sbjct: 263 GGEFYTPRSVVHTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSEKFVNEHGGR 311

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKR 291
                 +  +GQE    T  +C   + +R ++SD        I+  +  +  KD     +
Sbjct: 312 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLK 360

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + L+NPPF       +       +  +  R+  G P + + +  +L H+ + L     
Sbjct: 361 ADFILANPPFNISDWGGE-------RLRDDVRWAFGPPPVGNANYAWLQHIVHHLSPH-- 411

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A +VL++  +      SGE +IR+ ++E  +++ +VALP  LF+ T I   LWIL+
Sbjct: 412 --GFAGVVLANGSM--SSQQSGEGDIRKSMIEAGVVDCMVALPGQLFYSTQIPACLWILA 467

Query: 412 NR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461
                      K  +RRG++  I+A ++ T +      RR ++D +  +I   Y +    
Sbjct: 468 KDRSNGLVLQSKLRDRRGEILFIDARNMGTLVDRT---RRELSDAEVARIAATYHAWRGE 524

Query: 462 GKFSRMLDYRTF-------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                  D   F         R+   VL P R      +       A    ++L+ L + 
Sbjct: 525 QDAGDYADIAGFCKSAPLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAQK-MQRLATLWRE 583

Query: 514 FWLDILK 520
              +  K
Sbjct: 584 QQQEAAK 590


>gi|87310398|ref|ZP_01092528.1| type I restriction system adenine methylase [Blastopirellula marina
           DSM 3645]
 gi|87286897|gb|EAQ78801.1| type I restriction system adenine methylase [Blastopirellula marina
           DSM 3645]
          Length = 526

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 110/549 (20%), Positives = 204/549 (37%), Gaps = 65/549 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + +W  A+ +  +    ++  V+L    L+ +  A E  R  +      + G++   E 
Sbjct: 20  ESKLWLAADKMRNNMDAAEYKHVVLGLIFLKYISDAFEEMRQKLLAGEGDYAGAD-PEEP 78

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTI 124
               A   F+  +      L     +  +   I          +   K +    DF+   
Sbjct: 79  DEYRAENCFWVPTAARWQLLQDNAKQPTIGKLIDDAMVAIERDNPRLKGVLPK-DFAR-- 135

Query: 125 ARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             L+K   L ++      I L   +     ++  +YE+ +  F S   +    F TPR V
Sbjct: 136 PALDK-QRLGELIDLIGTIGLGDAENRSKDILGRVYEYFLSEFASAEGKKGGQFYTPRCV 194

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V +   +L                 +YDP CG+ G    +   V + G        +  +
Sbjct: 195 VRVLVEMLAPGKG-----------RIYDPCCGSAGMFVQSEKFVEEHGGRIG---DIAVY 240

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P T  + +  + IR +E D   + +       T  +DL    +  + L+NPPF  
Sbjct: 241 GQESNPTTRRLALMNLAIRGIEGDIGPENA------DTFRRDLHKDLKADFVLANPPFND 294

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                       H+N +  R+  G+P   + +  ++ H  + L      GG A  VL++ 
Sbjct: 295 S---------DWHRNDDDVRWAYGVPPKGNANYAWVQHFIHHLAP----GGFAGFVLANG 341

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR---- 419
            +      SGE EIR+ ++E DL++ +VALP  LF+ T I   LW L+  K ++ R    
Sbjct: 342 SM--SSNQSGEGEIRKAIVEADLVDCMVALPGQLFYSTQIPVCLWFLTRGKKDKSRRNRV 399

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI- 478
           G+   I+A  L   I       R + D++ ++I D Y +      +     +   Y  I 
Sbjct: 400 GETLFIDARKLGVLIDRV---HRELTDEELQRIADTYHAWRGDLKTINPKSKLKKYEDIP 456

Query: 479 ------KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
                 K  +     ++L        E      +     +     + + +  Q       
Sbjct: 457 GFCFSAKKEQIAEHGYVLTPGRYVGAEE---VEEDDEPFEEKMARLTQQLTDQFAESKKL 513

Query: 533 ESFVKESIK 541
           E  +++++K
Sbjct: 514 EKAIQKNLK 522


>gi|332704540|ref|ZP_08424628.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554689|gb|EGJ51733.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 564

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 117/577 (20%), Positives = 205/577 (35%), Gaps = 89/577 (15%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT   G+ + L  A+ +WK A+ L G     ++  V+L    L+ +  + E  R  ++ +
Sbjct: 1   MTNNDGTNSELVYADTLWKAADTLRGQVDAAEYKHVVLGLLFLKYISDSFEARREELQAE 60

Query: 59  YLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
               G +   L + ++      A   F+   E   + L +  TR ++ + I         
Sbjct: 61  LQTDGITEPQLTALLENRDEYTAERVFWVPPEARWANLQNQATRADIATLIDDAILAIER 120

Query: 108 -SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRR 165
            + N K+          I     +G L ++ +  + +    D       +  +YE+ + +
Sbjct: 121 DNPNLKSKLPRDYARRGIE----SGRLKRLIELIADVGFKGDRAKARDTLGRVYEYFLGK 176

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TPR VV L   ++                 +YDP CG+GG    +  
Sbjct: 177 FAQAEGKLGGEFYTPRCVVRLLVEMI-----------EPYNGRVYDPCCGSGGMFVQSER 225

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V   G        +   GQE  P T  +    + IR +E++     +       T  ++
Sbjct: 226 FVEAHGGQ---KTDISIFGQESNPTTWRLAHMNLAIRSIEANLGSQPA------DTFLRN 276

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           L +  R  Y L+NPPF       K          +  R+  G P + + +  ++ H  + 
Sbjct: 277 LHSDLRADYILANPPFNVSDWSGK-------LLQDDVRWRYGTPPLGNANYAWIQHFIHH 329

Query: 346 LE-LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           L      GGG A  V+++  L +     GE EIR+ ++E DL++AIVALP  LFF T I 
Sbjct: 330 LALPNGRGGGVAGFVMANGSLSSNA--GGEGEIRQRIVEADLVDAIVALPAQLFFTTGIP 387

Query: 405 TYLWILSNRK------------TEERRGKVQLINATDLWTSIRN------EGKKRRII-- 444
             LW L+  K             + R+G+   I+A  L             G     +  
Sbjct: 388 VCLWFLTRDKTGKNLKNGCPNRPDGRKGETLFIDARKLGIMQTRTLRVLTGGDSGETLLA 447

Query: 445 -------NDDQRRQILDIYVSRENGKFSRMLDYRTFG---YRRIK-------VLRPLRMS 487
                   D    +I+  +            D    G   Y  I        +       
Sbjct: 448 DGIGDPKPDSDIGRIVYAFRQWRGEPKPEWWDEEKHGGWAYCDISGFCKATHIEEIKEQG 507

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           F+L        E        +      +  +L  + +
Sbjct: 508 FVLTPGRYVGAEEQ---ANDNEPFIEKYPQLLAELEE 541


>gi|87300611|ref|ZP_01083453.1| type I restriction system adenine methylase [Synechococcus sp. WH
           5701]
 gi|87284482|gb|EAQ76434.1| type I restriction system adenine methylase [Synechococcus sp. WH
           5701]
          Length = 603

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/552 (19%), Positives = 191/552 (34%), Gaps = 70/552 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              +W  A+ L  +    ++  V+L    L+ +  + E  R+ +      + G+N   + 
Sbjct: 94  EAKLWLTADKLRNNMDAAEYKHVVLGLIFLKYISDSFEEHRAKLLAGEGDYEGAN-PEDP 152

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTI 124
               A   F+  +E   S L +   ++ +          I   +   K +         +
Sbjct: 153 DEYKAENVFWVPAEARWSHLQANAKQSTIGKLVDDAMVAIERDNPRLKGVLPKDYARPAL 212

Query: 125 ARLEKAGLLYKICKNFSGIELHPD------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +      L ++    + IEL              ++  +YE+ + RF S   +    F 
Sbjct: 213 DK----QRLGELIDVIATIELTAASEGEQTHRSVDLLGRVYEYFLTRFASAEGKNGGQFY 268

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  VV     +L                 +YDP CG+GG    +   V   G       
Sbjct: 269 TPSCVVRCLVEML-----------EPYKGRIYDPCCGSGGMFVQSEKFVESHG---GKLG 314

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE    T  + V  + +R +E+D         +   +  +DL    R  Y L+N
Sbjct: 315 DISIYGQESNATTRRLAVMNLALRGIEADFGP------EHADSFRRDLHPDLRADYVLAN 368

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF               +  +  R+  G+P   + +  ++ H  + L       G A  
Sbjct: 369 PPFNDS---------DWFRKDDDVRWQFGVPPKGNANFAWVQHFIHHLAPQ----GMAGF 415

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-- 416
           VL++  +      SGE EIR+ L+E DL++ +VALP  LF+ T I   LW L+  K    
Sbjct: 416 VLANGSM--SSNQSGEGEIRKALIEADLVDCMVALPGQLFYSTQIPVCLWFLAKSKAADG 473

Query: 417 -----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLD 469
                +RRG    I+A  L T I       R + +    +I   Y      NG+ S   D
Sbjct: 474 QRGFRDRRGHTLFIDARKLGTLIDRV---HRELLEADLAKISSTYHRWRCTNGEGSYE-D 529

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
              F                L        E            +     ++  +  Q    
Sbjct: 530 VPGFCKSATTAEIAAHGHV-LTPGRYVGAEE---VEDDGEPFEEKMPRLVAELEAQFAES 585

Query: 530 GWAESFVKESIK 541
              E  ++ +++
Sbjct: 586 AKLEQAIRANLR 597


>gi|15839331|ref|NP_300019.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9107980|gb|AAF85527.1|AE004080_9 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 519

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 103/518 (19%), Positives = 200/518 (38%), Gaps = 71/518 (13%)

Query: 1   MTEFTGSAAS-------LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M     +  +           ++K A+ L G+ + +D+  V L    L+ +  A E   S
Sbjct: 1   MAHRKTTTKNGNGGTLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHS 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
           A+  +      +    E         F+   +   S L +   ++ + + I         
Sbjct: 61  ALLAE--DAQAAEDKDEYLAH---NVFWVPKQARWSHLKANAKQSTIGTLIDEAMRDIEK 115

Query: 108 -SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRR 165
            + + K +         + ++    +L ++    SGI L+ +      ++  +YE+ + +
Sbjct: 116 DNPSLKHVLPKDYARPALNKV----MLGELIDLISGIALNEEGARSKDILGRVYEYFLGQ 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TPR VV +   +L                 +YDP CG+GG    +  
Sbjct: 172 FAGAEGKRGGEFYTPRSVVRVLVQML-----------EPYSGRVYDPCCGSGGMFVQSEK 220

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLS 283
            V + G        +  +GQE    T  +    + +R ++SD        I+  +  +  
Sbjct: 221 FVLEHGGRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFH 269

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     +  Y L+NPPF               +  E  R+  G+P   + +  +L H+ 
Sbjct: 270 NDALRDLKADYILANPPFNISDWGGD-------RLREDVRWKFGVPPAGNANYAWLQHIY 322

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L       G A +VL++  +      SGE EIR  ++E D+++ ++A+P  LF+ T I
Sbjct: 323 HHLAP----NGTAGVVLANGSM--SSNHSGEGEIRTHMIEADIVDCMIAMPGQLFYSTQI 376

Query: 404 ATYLWILSNRKTE-----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
              LW L+  K       +RRG+V L++A  L   +      RR + D+  +QI D Y +
Sbjct: 377 PACLWFLARNKNPGKGLRDRRGQVLLMDARALGVLVDRT---RRELTDEHIQQIADTYHA 433

Query: 459 RENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGL 495
               + +        G+ +   +    +  ++L     
Sbjct: 434 WRGEQGAAAYADVA-GFCKSATLEDIRKQGYVLTPGRY 470


>gi|313672539|ref|YP_004050650.1| site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939295|gb|ADR18487.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 509

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 97/534 (18%), Positives = 197/534 (36%), Gaps = 53/534 (9%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +  S    +WK A+ L  +    ++  V+L    LR +  A E     +++   
Sbjct: 1   MAEQKQNIESFEQSLWKAADKLRKNIDAAEYKHVVLGLIFLRYISDAFEDLYEKLKKGEG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
            + G++   +     A   F+   E   S L +           +     I   + + K 
Sbjct: 61  EYSGAD-PEDVDEYKAENVFFIPPEARWSYLKAHAKSPEIGKIIDRAMDLIEKENPSLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172
           +         I  +     +  +   F+ + ++        ++ +++E+ + +F     +
Sbjct: 120 VLPKVYARGNIDPIS----IGGLIDLFNNMAINEAKEKTSDILGHVFEYFLGQFALAEGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR VV L   +L                 ++DP CG+GG    +   V +   
Sbjct: 176 KGGQFYTPRSVVELLVEML-----------EPYKGRVFDPCCGSGGMFVQSEKSVQEHQG 224

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +GQE    T  +C   + IR ++S   +   +      +   D     + 
Sbjct: 225 KIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNPEG-----SFLNDAHKDLKA 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +          +  R+  G+P   + +  ++ H    L      
Sbjct: 277 DFVIANPPFNDSDWSGE-------LLRKDVRWKYGVPPEGNANYAWIQHFIFHLSPS--- 326

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL+   L      + E EIR+ ++++D+I+ IV LP  LF  T I   LW +  
Sbjct: 327 -GKAGFVLAKGSLTT--KQNAEYEIRKNMIQDDIIDCIVNLPPKLFLNTQIPACLWFIRK 383

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            KT + +G++  I+A D+   I     ++R++ +D  R+I D Y   +    S       
Sbjct: 384 NKTTK-KGQILFIDARDMGQLINR---RQRVLTEDDIRKIADTYHKWQKEDGSYE---DI 436

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            G+ +   +     + ++L       L  +               + L+ + ++
Sbjct: 437 KGFCKSATIEEVANLDYVLTPGRYVGLPDEEEDFDFEERFNKLKAEFLQQLKEE 490


>gi|224023386|ref|ZP_03641752.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM
           18228]
 gi|224016608|gb|EEF74620.1| hypothetical protein BACCOPRO_00079 [Bacteroides coprophilus DSM
           18228]
          Length = 502

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 101/538 (18%), Positives = 194/538 (36%), Gaps = 64/538 (11%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M + + +A       IWK A+ L G+   +++  V+L    L+ +    E     + E+ 
Sbjct: 1   MAKKSNTADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDRFEVKYHELLEE- 59

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNA 111
               G   + +     +   F+   E   + +          T   +N    I   +   
Sbjct: 60  ----GDGFEEDKDEYTSENIFFVPQEARWTVVTKAAHTPEIGTAI-DNAMRLIEKENPRL 114

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I         + +      L  +   F+ I++        ++   YE+ + +F     
Sbjct: 115 KGILPKNFARPELDK----RRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEG 170

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP  +V     +L                 +YDP CG+GG    +   + +  
Sbjct: 171 KLAGEFYTPACIVRTLVEVL-----------QPYSGRVYDPCCGSGGMFVQSAKFINEHQ 219

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +   GQ+  P T  +    + IR +E+D  +  +       T   D     +
Sbjct: 220 GNIN---NISVFGQDSNPTTWKMAQMNLAIRGIEADLGKFAA------DTFFDDQHPTLK 270

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF               K  +  R+  G+P   + +  ++ H+ + L     
Sbjct: 271 ADYILANPPFNLSDWGAD-------KLQDDVRWKYGIPPSGNANFAWIQHMIHHLSPH-- 321

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR  +VL++  L       GE  IR  +++ DL+E IV +P+ LF+ T I   LW L+
Sbjct: 322 --GRIGMVLANGAL--SSQSGGEGTIRENIIKADLVECIVTMPSQLFYTTGIPVSLWFLN 377

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFSRMLDY 470
             K  ++ GK+  I+A  + T +     K R +++    ++I   Y   + G        
Sbjct: 378 RSK--KQIGKILFIDARQMGTMVTR---KLRELDEKKDIQRIAKTYNDFQAG-----TLE 427

Query: 471 RTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
              GY  +  +    +  +IL       +       +            L  M ++ +
Sbjct: 428 NEKGYCAVATLDEVAKQDYILTPGRYVGIAEAEDDGEPFQEKMERLTSELSDMFEKSH 485


>gi|85711390|ref|ZP_01042449.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Idiomarina baltica OS145]
 gi|85694891|gb|EAQ32830.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Idiomarina baltica OS145]
          Length = 511

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 201/541 (37%), Gaps = 56/541 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--- 60
            T S  S+   +W   +   G      +   +L    L+ +    +        ++    
Sbjct: 2   TTISQDSINKALWNACDTFRGTINAGTYQDFLLTMLFLKYISDVWQDHYDQYVAQHGDEP 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116
                 +  E FV     SFY   +              L +   +     K     +F+
Sbjct: 62  ELIEEMMKSERFVLPRDASFYALYDRRYEPGNGERIDQALHAIEEANGTKLKDAGKSVFQ 121

Query: 117 DFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171
           D  F+        +K  +L  + ++F+  EL+          V+ N YE+LI+ F +   
Sbjct: 122 DISFNTDKLGEEKQKNDILRHLLEDFAKPELNLKPSRVGSLDVIGNAYEYLIKHFAASGG 181

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP ++  L   LL           P    ++ DP CG+G  L      V    
Sbjct: 182 QKAGEFYTPPEISDLIAELL----------DPQPGDSICDPACGSGSLLMKCGRKVIANH 231

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        GQE    T ++    M +   +       +  I+ G T+       K 
Sbjct: 232 DSKE----YALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDKN 280

Query: 292 -----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                F    +NPPF             + +N +  RF  G+P  + G   F++H+   L
Sbjct: 281 GDLMLFDIVTANPPFSLD-----KWGHDDAENDKFSRFRRGVPPKTKGDYAFILHMIETL 335

Query: 347 EL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           +       GGR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I 
Sbjct: 336 KPASSSKRGGRMGVVVPHGVLFRG---SKEGKIRQQLIDENLLDAVIGLPEKLFYGTGIP 392

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463
             + +    K++    KV  I+A+  +      GK +  ++DD  ++I+D Y SRE  + 
Sbjct: 393 AAILVFKKSKSD---DKVLFIDASREF----KSGKNQNQLSDDNIQKIVDTYHSRETVEK 445

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +S +            +  P  +    ++  +  +   +  +KL    +     + K + 
Sbjct: 446 YSYLATLGEIQENDYNLNIPRYVDTFEEEEEIDLMAVRVERQKLKVELEELESQMEKYLE 505

Query: 524 Q 524
           +
Sbjct: 506 E 506


>gi|259419466|ref|ZP_05743382.1| type I restriction-modification system, M subunit [Silicibacter sp.
           TrichCH4B]
 gi|259344707|gb|EEW56594.1| type I restriction-modification system, M subunit [Silicibacter sp.
           TrichCH4B]
          Length = 505

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 111/541 (20%), Positives = 199/541 (36%), Gaps = 58/541 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   +    W   +   G      +   IL    L+ +           R++Y 
Sbjct: 1   MT-DQVTQQQINQTAWAACDTFRGAVDAGQYKDYILVMLFLKYISDLWNDHLETYRKQYG 59

Query: 61  AF---GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    ++ E F+   G SFY+                 LE    +     + +F +
Sbjct: 60  DDEARIRRRLERERFILPEGASFYDLYAQRNEANIGERINIALEKIEDANRAKLEGVFRN 119

Query: 118 FDFSSTIA---RLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            DF+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  +
Sbjct: 120 IDFNSEANLGRSKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  V  L   L           +P    T+ DP CG+G  L  A   V     
Sbjct: 180 KAGEFFTPAPVSRLLAKL----------AAPQPGNTICDPACGSGSLLIQASQEVGSEN- 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
                     +GQE+   T A+    M +           +  I+   TL+         
Sbjct: 229 -------FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEADH 274

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +RF   L+NPPF       +DA   ++K     RF  G+P  S G   F+ H+    + 
Sbjct: 275 LQRFDVVLANPPFSLDKWGAEDAAGDQYK-----RFWRGVPPKSKGDYAFITHMIEIAKR 329

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + 
Sbjct: 330 QS---GRVAVIVPHGVLFRGGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPVAIL 383

Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463
           I    + E      R  V  I+A+  +T     GK + ++++    ++L+ Y +R   + 
Sbjct: 384 IFDRSREEGGANTDRRDVLFIDASKEFTP----GKTQNVMDEVHVARVLETYATRAEVER 439

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +S              +  P  +     +  +         +++        + +   + 
Sbjct: 440 YSHRASPEEIAENGYNLNIPRYVDTFEPEEEIDVAAVQKDIQRIEAELAEVRVKMAGYLK 499

Query: 524 Q 524
           +
Sbjct: 500 E 500


>gi|322369760|ref|ZP_08044323.1| type I restriction-modification system, M subunit [Haladaptatus
           paucihalophilus DX253]
 gi|320550678|gb|EFW92329.1| type I restriction-modification system, M subunit [Haladaptatus
           paucihalophilus DX253]
          Length = 520

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 217/543 (39%), Gaps = 59/543 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            + T   A+L + +W+ A+ L G     D+   I     L+R+    E     + E+Y  
Sbjct: 13  NQQTLDLATLESHLWEAADILRGSIDAADYKNYIFGLLFLKRINDRFEEETEEIAEEYGI 72

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN----AKAIF 115
              +        +     F+         + +  T+    L   +A+  D     A  + 
Sbjct: 73  DEDTVAHDRDLHEE----FWVPERAHWDHIAAQDTDIGATLNKALAAVEDENDAIADRVL 128

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGA 174
              DF+    RL  A  L ++  +F+      + + D  +    YE+LIR+F  +  +  
Sbjct: 129 TSVDFNDK-DRLSDA-TLDELVTHFTKHRYRNEDLEDPDIFGRAYEYLIRQFADDAGKKG 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR+VV L    +           P     +YDP CG+GG L  +  HV   G   
Sbjct: 187 GEFYTPREVVQLLVDCV----------DPEEGDRVYDPACGSGGMLIYSAQHVEQEGGD- 235

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TG 289
                +  +GQE    T A+    +L+              I +G T+++  F       
Sbjct: 236 --RDDISLYGQEKNLNTWAIGQMNVLLH-------ELQDAKIAKGDTITEPKFVTEHDEL 286

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F   ++NPP+ +K    +   E E       RFG GLP  + G   ++  +   L   
Sbjct: 287 EVFDRVVANPPWNQKKWSKEWVQENE----PYNRFGYGLPPKNRGDWSWIQLMLASL--- 339

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  G+A IV+ +  LF       E +IR+ +LE DLIEA++ALP +LF+ T     + I
Sbjct: 340 -SETGKAGIVMDNGVLFRS---RSEKKIRKPILEADLIEAVIALPENLFYNTGSPGCILI 395

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEG-------KKRRIINDDQRRQILDIYVS-REN 461
           ++  K EER+GKVQ I A D   ++R  G         +  +  +    + + +++ RE 
Sbjct: 396 MNKDKPEERKGKVQFIYAED--QTLRESGVQVFEELSNQNQLTQEGVEYLAETHLTGREE 453

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
              SR++D          +  P  +     +  +   E      +L+   +    +  + 
Sbjct: 454 DHHSRLVDLEEIEENDWNLNVPRYVDTTEPEEPIDVSEKLRELDELAEERRKTDEEFQQY 513

Query: 522 MMQ 524
           M +
Sbjct: 514 MEE 516


>gi|262198182|ref|YP_003269391.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium
           ochraceum DSM 14365]
 gi|262081529|gb|ACY17498.1| Site-specific DNA-methyltransferase (adenine- specific) [Haliangium
           ochraceum DSM 14365]
          Length = 860

 Score =  332 bits (852), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 102/477 (21%), Positives = 171/477 (35%), Gaps = 59/477 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++  A+ L G    ++F + I     ++R     E  R  +  +  A G S 
Sbjct: 23  TLGQLERHLYAAADILRGKMDASEFKEYIFGMLFIKRCSDEFEARREEILAEQQAAGASA 82

Query: 67  IDLESFVKVAG---YSFYNTSEYSL------STLGSTNTRNNLESYIASFSDNAKAIFED 117
                  +       SF+                  T     L + +   +     +   
Sbjct: 83  EAAALAAEQPERYARSFFVPPSARWAQVSALERDLGTGLNAAL-AALEDTNPALHGVLRH 141

Query: 118 FDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGA 174
            DF+ T+  +R+     L  +  +F    L         M    YE+LI  F     +  
Sbjct: 142 IDFNRTVGKSRMPD-KRLRALVAHFGRHRLRNRDFEFSDMLGAAYEYLIGEFADSAGKKG 200

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV L   L            P     +YDP  G+GG L  A  +V + G   
Sbjct: 201 GEFYTPRPVVRLIVRL----------SDPRPGMRVYDPCSGSGGMLILARQYVQEHGGDA 250

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
                   +GQE       +    ML+  +          +I+ G TL + L        
Sbjct: 251 GSLG---LYGQEDNGGVWTISQMNMLLHGV-------SDADIRNGDTLHEPLHIDPASGE 300

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             RF   ++NPPF + +  D+  + +        RFG           ++  H+   L  
Sbjct: 301 LLRFDRIITNPPFAQNYSPDELPLPERF------RFGMCPHAGKKADWMYAQHMLAALAP 354

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GG A  V+    LF G     E  IR  +LE DL+EA++ LP +LF+ T+I   + 
Sbjct: 355 ----GGMAVTVMPHGVLFRGGV---EQAIRSRVLEADLVEAVIGLPPNLFYGTSIPACVL 407

Query: 409 ILSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +L     K  ER+G+V  ++A+D + + R     +  +  +   +I   +       
Sbjct: 408 VLRAPEAKPPERQGRVLFVDASDEFHAARA----QNHLQPEHVEKIATAFERFAEVP 460


>gi|126726005|ref|ZP_01741847.1| type I restriction-modification system, M subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126705209|gb|EBA04300.1| type I restriction-modification system, M subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 502

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 202/532 (37%), Gaps = 53/532 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63
           + + +    W   +   G    +++   +L    ++ L    +  R+    ++       
Sbjct: 5   TQSEINKAAWAACDTFRGLIDASEYKDYVLTMLFMKYLSDVWQDHRTGYEAEHPDSPELV 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED--FDFS 121
              +  E+F    G+SFY+  +               ++   +     + +F D  F+ +
Sbjct: 65  EELMRTEAFALPKGHSFYDLYDRRHEAGNGQRIDEATQAIEQANLSKLENVFRDISFNAN 124

Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 +K  LL  + ++F+   ++L P  V    ++   YE+LI RF S   + A +F 
Sbjct: 125 KLGEEDQKNDLLKSLLEDFNTPALDLRPSRVGQLDIIGGAYEYLISRFASSAGKKAGEFY 184

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  L   L+           P     + DPTCG+   L      + D     K   
Sbjct: 185 TPAQVSMLMARLM----------DPQQNDEICDPTCGSASLLMKCGKLIRDSSGTRK--- 231

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFH 293
               +GQE    T A+    + +   E       + +IQ G T+          T + F 
Sbjct: 232 -YALYGQEAIGSTWALAKMNLFLHGEE-------NHDIQWGDTIRSPKLTTGDDTLRHFD 283

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF               +  + GRF  G+P  + G   F++H+   ++      
Sbjct: 284 VVVANPPFSLD-----KWGVAAAEADKFGRFTRGIPPKTKGDYAFILHMIETMKPRT--- 335

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A+V+    LF G   S E +IR+ L+E +L++A++ LP  LFF T I   + +   R
Sbjct: 336 GRMAVVVPHGVLFRG---SSEGKIRKQLIEQNLLDAVIGLPEKLFFGTGIPAAILVFRKR 392

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K +     V  I+A+  +      G  +  + D    +I++ Y +R +  K++ +     
Sbjct: 393 KAD---DTVLFIDASREFD----SGTNQNTLTDSHLDKIVETYAARADMDKYAHVASAAE 445

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                  +  P  +    ++  +  +       KL+   +     +   + +
Sbjct: 446 IAENDYNLNIPRYVDTFEEEEEIDLMAVRSERLKLNTEMEELEAKMAGYLAE 497


>gi|84385719|ref|ZP_00988750.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
 gi|84379699|gb|EAP96551.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
          Length = 492

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 128/551 (23%), Positives = 217/551 (39%), Gaps = 72/551 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   + + L  ++ K A  L G    +DF   I P    +R+    +       E+  
Sbjct: 1   MTEK-LTLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEE-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKA----I 114
               S  D E       + F   +      +  T  N    +E  +       +     I
Sbjct: 58  ----SGGDEEYASMPEMHRFEIPTGCHWRDVRETTTNVGITIEDALRGIEQANQEYLYGI 113

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +S+   +L    LL  + ++FS   L    V   ++ N YE+LI+ F    ++ A
Sbjct: 114 FGDAQWSNK-NKLSD-ELLINLVEHFSQHTLGNQNVAPDMLGNAYEYLIKHFADLTNKKA 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VVHL   +L           P    T+YDP CGTGG L + ++H+ D    +
Sbjct: 172 GEFYTPRSVVHLLGMIL----------DPHEGETIYDPACGTGGMLLECVDHLKDNKEDY 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
           +        GQE    + ++    M +  +E          I +G TL    F      K
Sbjct: 222 RTLK---LFGQEKNLTSSSIARMNMFLHGIEDFE-------ILRGDTLRHPAFFEADGLK 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   ++NPPF  K    ++       N   GR   G+P   +G M ++ H+   +    
Sbjct: 272 TFDCVIANPPFSLKEWGAENWA-----NDPYGRNIAGVPPKGNGDMAWVQHMVKSM---- 322

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  GR  +VL    LF   A   E +IR+ LLE D++EA++ L  ++F+ T +A  + + 
Sbjct: 323 NSTGRMTVVLPHGALFRKAA---EGKIRKQLLEQDMLEAVIGLGPNVFYGTQLAACVMVF 379

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              K  +++GKV  I+A+D        G+ +  +  +  +QI D Y   ++ +       
Sbjct: 380 KQNKPADKKGKVMFIDASDQI----RVGRAQNFLEPNHVQQIYDWYHGYQDVEN------ 429

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
               Y ++  +  L             L   +   K+   +     + +  + Q      
Sbjct: 430 ----YVKVASMDEL-------AENDYNLNIPLYVEKIIEDNLPSVEEAMADLKQAWQESL 478

Query: 531 WAESFVKESIK 541
            AE   K+ +K
Sbjct: 479 EAEEKFKKVLK 489


>gi|167041819|gb|ABZ06560.1| putative N-6 DNA methylase [uncultured marine microorganism
           HF4000_097M14]
          Length = 572

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/576 (21%), Positives = 225/576 (39%), Gaps = 59/576 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   +   L +F+W+ A+ L G+    +F   I     L+R+  + +  R  V  K+L
Sbjct: 1   MSEK-LTLQQLESFLWETADILRGNMDAAEFKDYIFATMFLKRISDSFDDEREKVINKFL 59

Query: 61  AFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGS--TNTRNNLE---SYIASFSDNAKA 113
               +    E          +F+   +   + L +   +    L    + I   + + + 
Sbjct: 60  KKKKNQKQAEKLANDPDQYDTFFIPKKAHWNHLKNLKHDVGAVLNKATAAIEDQNPSLEG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSE 172
           +    DF+      +K      +  +FS   L          M + YE+LI+ F     +
Sbjct: 120 VLVSIDFNKKDKLSDKKLR--DLLSHFSKHRLRNSDFEKPDLMGSAYEYLIKMFADSAGK 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP +VV+L   L+           P     + DPTCG+GG L  + N++ + G 
Sbjct: 178 KGGEFYTPSEVVNLLVRLI----------KPKAKMRVCDPTCGSGGMLIQSRNYLIEHG- 226

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
             + P  +   GQE+   T A+C   M +  +        + +I++G T+          
Sbjct: 227 --ENPRNISLFGQEMNQGTWAICKINMFLHSV-------FNADIKKGDTIRDPKHLRSGE 277

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   ++NPPF           ++E  N   GRF  G P    G + F+ H+   L  
Sbjct: 278 LMTFDRVIANPPFSL-----AKWGKEEADNDSFGRFPYGTPPKDTGDLAFVQHMIASL-- 330

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             N  G   +V+    LF G     E EIR+ +L+NDL+EA++ LP  LF+ T I   + 
Sbjct: 331 --NAYGVMGVVVPHGVLFRGA---SEMEIRKGILDNDLLEAVIGLPPKLFYGTGIPAAML 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           I++ +K+++R+ K+  IN+   +      GK +  + +   ++IL  + + E+ K +S++
Sbjct: 386 IINKKKSKDRKNKIIFINSDLEFEE----GKNQNRLKEQDIKKILSKFNNFEDTKRYSKV 441

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM---- 523
           +           +                          +S +   +  + LK M     
Sbjct: 442 VSMDKIKENEYNLNIRRYADTSPPPEKFDTYALLNGGIPISEIEDEYIQETLKGMDVSCV 501

Query: 524 ---QQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
              +    Y +      +    +  KT   K +  F
Sbjct: 502 FNKKDKNYYEFKSEIKSKEEIKDFLKTKNQKITAQF 537


>gi|313618466|gb|EFR90471.1| putatIve type i restriction enzyme hindviip m protein [Listeria
           innocua FSL S4-378]
          Length = 507

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 113/540 (20%), Positives = 206/540 (38%), Gaps = 71/540 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE TG+       +WK A+ L G    +++  V+L    L+ +    E    A+ E+  
Sbjct: 1   MTENTGNIG-FEETLWKAADKLRGSMDASEYKHVVLGLIFLKYISDKFETKFDALIEE-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAKA 113
              G+  + +     A   F+   E   S +        +  +I          + + K 
Sbjct: 58  ---GAGFEEDRDEYEAENIFWVPKEARWSFIKDNAKDPKIGQFIDDAMILIEKENTSLKG 114

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           + +       I +      L ++    S I+LH       ++  +YE+ + +F S   +G
Sbjct: 115 VLDKRYARPEIDK----RRLGELIDLISTIKLH-QNGEKDLLGRVYEYFLGQFASVEGKG 169

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V     ++                 +YDP CG+GG    +   V D    
Sbjct: 170 GGEFYTPTSIVKTLVDMI-----------EPYQGRVYDPCCGSGGMFVQSEKFVEDHQGR 218

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +    L  +GQE+   T  +C   + IR L+++             T   DL    +  
Sbjct: 219 VE---NLSIYGQEMNSTTWKLCKMNLAIRGLDANLGPH------HDDTFHHDLHKTLKAD 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF              ++  +  R+  G+P   + +  +L H+   L       
Sbjct: 270 FILANPPFNISDWGG-------NQLTDDVRWKFGIPPAGNANYAWLQHMVYHLAP----N 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A IVL++  L      S E EIR+ LLE D+++AIVALP  LF+ T I   LWIL+  
Sbjct: 319 GSAGIVLANGSLSTN--TSNEGEIRKNLLEEDMVDAIVALPDKLFYSTGIPVSLWILNRN 376

Query: 414 KTEERR-----GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE--NGKFSR 466
           K +  +      +V  I+A  L   I     + R + ++   +I + Y      +G++  
Sbjct: 377 KKDNPKYRSREHEVLFIDARQLGEMIDR---RHRELTEEDISKISETYHEWRNIDGEYED 433

Query: 467 MLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD----ITWRKLSPLHQSFWLDILKP 521
           +      G+ +   +       ++L       +E      I + +      +   ++   
Sbjct: 434 I-----KGFCKSASIEDIREHEYVLTPGRYVGIEDIEDDGIPFDEKMESMTAELAELFAK 488


>gi|301166115|emb|CBW25690.1| putative type I restriction enzyme modification protein
           [Bacteriovorax marinus SJ]
          Length = 580

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 112/492 (22%), Positives = 189/492 (38%), Gaps = 55/492 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   + A +   +W   +   G     ++   IL    ++ L    E    A  E++ 
Sbjct: 1   MTQK-VTQAEINKILWDACDTFRGVVDAGEYKNYILTMLFIKYLSDTYEEKYEAYSEQFK 59

Query: 61  AFG---GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    ++ E+FV   G  F +  +              LE    +  +  + +F +
Sbjct: 60  GNETRIKRALEKENFVLPDGCHFNDIYKQKEEKNIGEIIDVALEKIENANKEKLENVFRN 119

Query: 118 FDFS---STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171
             F+   +      +   L  +  +F+  +L+          V+ N YE+LI  F +   
Sbjct: 120 VSFNSEANLGKTKSRNARLKHLLDDFNSPKLNMRKSHIGNMDVIGNAYEYLIANFAAGAG 179

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L   L+           P     +YDPTCG+G  L      +   G
Sbjct: 180 KKAGEFYTPSEVSQLLAMLV----------KPEKGSRIYDPTCGSGSLLIRCAEQLTKNG 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
            +         +GQE+   T A+    M +   +          I+ G T+   +     
Sbjct: 230 IN-----DFQIYGQEITGATWALAKMNMFLHGFDRSV-------IENGDTIRNPIHLEND 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   ++NPPF             E K+   GRF  G+P  S G + F+ H+   L 
Sbjct: 278 ELMTFDVVVANPPFSLD-----KWGIDEAKSDSYGRFNYGIPPKSYGELAFVQHMVASL- 331

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  GR A+VL    LF G   S E  IR  L+ +DL+EA++ LP+ LFF T I   +
Sbjct: 332 ---NENGRCAVVLPHGVLFRG---SAEKRIREGLINDDLLEAVIGLPSGLFFGTGIPASI 385

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            + + +K+ +R+ KV  IN    +      GK +  + D     I+  YV  +      +
Sbjct: 386 MVFNKKKSADRKDKVLFINGDLEYQE----GKNQNKLRDQDINHIVANYVEFKTEG---L 438

Query: 468 LDYRTFGYRRIK 479
             +    Y R+ 
Sbjct: 439 YRHEDKHYSRVV 450


>gi|292491020|ref|YP_003526459.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
 gi|291579615|gb|ADE14072.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
          Length = 519

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/550 (18%), Positives = 194/550 (35%), Gaps = 63/550 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L   +WK+A+ L  +    ++  V+L    L+ +  A E   + + E    + G+
Sbjct: 11  KTEEPLQKSLWKSADRLRKNMDAAEYKHVVLGLIFLKYISDAFEELHAKLSEGLGEYAGA 70

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKAIFEDF 118
           +   ++    A   F+       S L +         +++     I   +   K +    
Sbjct: 71  D-PEDADEYRAENVFFVPEGARWSYLQARAKLPGIGKDVDEAMEAIEKENPTLKGVLPKQ 129

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                + +      L  +      I L         ++  +YE+ +  F +   +    F
Sbjct: 130 YARQNLDKAS----LGALIDLLGKIGLGDATARSRDILGRVYEYFLGEFAAAEGKKGGQF 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +V L   +L                 +YDP CG+GG    +   V          
Sbjct: 186 YTPAAIVKLLVNML-----------EPYKGRVYDPCCGSGGMFVQSEKFVEVHQGRID-- 232

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQE    T+ +C   + IR ++    R   +      +   D     +  Y ++
Sbjct: 233 -DISIYGQESNQTTYRLCRMNLAIRGIDGSNVRWNGEG-----SFLNDAHKDMKAEYIIA 286

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF       +          +  R+  G+P + + +  ++ H+   L       G   
Sbjct: 287 NPPFNDSDWSGE-------LLRDDPRWQFGVPPVGNANFAWMQHMIYHLAP----NGTLG 335

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L       GE EIR+ ++E  L++ IVALP  LF+ T I   LW +S+ +   
Sbjct: 336 LVLANGSL--SSNSGGEGEIRKAIIEAKLVDCIVALPDKLFYNTGIPACLWFISHDRRNH 393

Query: 418 R----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--------FS 465
                  ++  I+A +L   I     + R  +D+   +I D Y +  N          F 
Sbjct: 394 NFRNREDEILFIDARNLGQMITR---RNRDFSDEDIARIADTYHAWRNKDGGYEDVKGFC 450

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +          +  VL P R   I D+     +  +    KL+    +  +   + +  +
Sbjct: 451 KAATLEDVRKHKH-VLTPGRYVGIPDEED-DGVPFEEKMTKLTEEL-AAQMAQGQALDAR 507

Query: 526 IYPYGWAESF 535
           I        F
Sbjct: 508 IRENLAKVGF 517


>gi|291556523|emb|CBL33640.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 805

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/530 (20%), Positives = 204/530 (38%), Gaps = 61/530 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++  L + +++    L G     ++   + P    +RL    +    A  E+      S
Sbjct: 313 TTSQKLFSHLFEACNILRGPINQDEYKSYVTPILFFKRLSDVYDEETQAALEE------S 366

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFS----DNAKAIFEDFD 119
             D E       + F          +     N    + + +        D    +F  FD
Sbjct: 367 GGDEEYASFAENHRFVIPDGCHWQDVREASENVGVAIVNAMNGIERANPDTLSGVFSSFD 426

Query: 120 FSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            ++   + + +   L  + ++ S +++  +     VM + YE LI++F     + A +F 
Sbjct: 427 DANWTDKTKLSDERLKDLIEHMSKLKVGNNNYSADVMGDSYEFLIKKFADLSKKNAGEFY 486

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR +V L   LL          +P    T+YDP CGTGG L +A+  +     H     
Sbjct: 487 TPRSIVKLLIMLL----------APKAGETVYDPACGTGGMLIEAIRFM-----HGDKLT 531

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294
               +GQE    T A+    + +   +          + QG TL    +    + + F  
Sbjct: 532 YGRIYGQEKNLATSAIARMNLFLHGAK-------DFKVTQGDTLRSPNYLERGSLQTFDC 584

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K    +        +   GR   G P  S+G   +L H+   +       G
Sbjct: 585 VVANPPFSLKNWGSEQ-----FSSDIYGRNIWGCPTDSNGDFAWLQHMVKSMNPKT---G 636

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+VL    LF       E EIR+ L+E+D +EAI+ + + +F+ T ++  +  L+N K
Sbjct: 637 RCAVVLPQGVLFRSGK---EGEIRKQLVESDKLEAIITMASGVFYSTGVSACILFLNNNK 693

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN----GKFSRMLDY 470
               RG++ +I+ + ++T  R     + I+ +   + + D Y + E+     K   + D 
Sbjct: 694 AVSHRGRICMIDGSSIYTPQRA----QNIMTEADIQTVFDYYTTYEDVIEKVKIVTIADI 749

Query: 471 RTFGYRRIK---VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           R   Y       + +  + +   ++      EA     +     +   L 
Sbjct: 750 REKDYSLAINNYIEKKEQETVPPEEIRRQYFEAYDEMIEAETRMRELLLK 799


>gi|322691670|ref|YP_004221240.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
 gi|291516263|emb|CBK69879.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. longum F8]
 gi|320456526|dbj|BAJ67148.1| DNA methylase [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 502

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 105/560 (18%), Positives = 213/560 (38%), Gaps = 68/560 (12%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   + A +     IW  A+ L G+   +++  V+L    L+ +    +     + E+
Sbjct: 1   MAKKKDNTAEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQELVEE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNA 111
                G   + +     +   F+        T+ +          ++     I + ++  
Sbjct: 61  -----GEGFEEDRDEYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I    +F+     L+K   L ++   F+ +++        ++   YE+ + +F     
Sbjct: 116 KGILPK-NFARQ--ELDKR-RLGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP  VV     ++                 +YDP CG+GG    + + V    
Sbjct: 172 KNAGEFYTPACVVKTLVEVI-----------EPYHGRVYDPCCGSGGMFVQSADFVKRHQ 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +  +GQE  P T  +    + IR +++D     +       T  +DL   ++
Sbjct: 221 GNIN---DISVYGQESNPTTWKMATMNLAIRGIDADLGDHNA------DTFFEDLHKTEK 271

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + L+NPPF  K    K       K     R+  G P   + +  ++ H+ + L    N
Sbjct: 272 FDFILANPPFNLKDWGGK-------KLENDVRWQYGTPPEGNANFAWVQHMIHHL----N 320

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR  +VL++  L      + E EIR  +++ DL+E I+A+P  LF+ T I   LWI++
Sbjct: 321 RSGRMGMVLANGAL--SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIIT 378

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K  ++ GK   I+A D+ T +     + R   D+   ++   + +  +G         
Sbjct: 379 KNK--KQSGKTLFIDARDMGTMVSR---RLREFTDEDIAKVSTAFDAFRDG-----TLET 428

Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             G+  I          +IL           +   ++    + F   + +   +    + 
Sbjct: 429 EKGFSAIATTEDIKAQDYILTPGRY------VGVAEVEEDDEPFEEKMTRLTGEIAKCFE 482

Query: 531 WAESFVKESIKSNEAKTLKV 550
            +    ++  K+ EA    +
Sbjct: 483 ESNRLQEQIKKNLEAIGYGM 502


>gi|294624818|ref|ZP_06703478.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292600882|gb|EFF44959.1| type I restriction-modification system DNA methylase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 536

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 112/547 (20%), Positives = 217/547 (39%), Gaps = 78/547 (14%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              S + L  A+ +WK A+ L G+ + +D+  V+L    L+ +  A E   +A+  +   
Sbjct: 24  KKESVSELDYADKLWKTADKLRGNMEPSDYKHVVLGLIFLKYISDAFEARHAALLAE--- 80

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
                   +    +A   F+   +   S L +   ++++ + I          +++ K +
Sbjct: 81  --DPQAAEDKDEYLAENIFWVPKQARWSHLQANAKQSSIGTLIDDALRAIEKDNESLKGV 138

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEG 173
                    + ++    +L ++    SGI L+        V+  +YE+ + +F     + 
Sbjct: 139 LPKDYARPALNKV----MLGELIDLISGIALNDKGAKSKDVLGRVYEYFLGQFAGAEGKR 194

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VVH    ++                 +YDP CG+GG    +   V + G  
Sbjct: 195 GGEFYTPRSVVHTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSEKFVNEHGGR 243

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKR 291
                 +  +GQE    T  +C   + +R ++SD        I+  +  +  KD     +
Sbjct: 244 IG---DIAIYGQESNYTTWRLCKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLK 292

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + L+NPPF       +       +  +  R+  G P + + +  +L H+ + L     
Sbjct: 293 ADFILANPPFNISDWGGE-------RLRDDVRWAFGPPPLGNANYAWLQHIVHHLSPH-- 343

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A +VL++  +      SGE +IR+ ++E   ++ +VALP  LF+ T I   LWIL+
Sbjct: 344 --GVAGVVLANGSM--SSQQSGEGDIRKAMIEAGAVDCMVALPGQLFYSTQIPACLWILA 399

Query: 412 NR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461
                      K  +RRG++  I+A ++   +      RR ++D +  +I   Y +    
Sbjct: 400 KDRSNGLVLKSKLRDRRGEILFIDARNMGALVDRT---RRELSDAEVARIAATYHAWRGE 456

Query: 462 GKFSRMLDYRTF-------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                 +D   F         R+   VL P R      +       A    ++L+ L + 
Sbjct: 457 QDAGDYVDIAGFCKAASLDEVRKHGHVLTPGRYVGAAAQEDDGEPFAKK-MQRLATLWRE 515

Query: 514 FWLDILK 520
              + +K
Sbjct: 516 QQQEAVK 522


>gi|291457405|ref|ZP_06596795.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213]
 gi|291381240|gb|EFE88758.1| ribosomal protein L11 [Bifidobacterium breve DSM 20213]
          Length = 502

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 105/560 (18%), Positives = 213/560 (38%), Gaps = 68/560 (12%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   + A +     IW  A+ L G+   +++  V+L    L+ +    +     + E+
Sbjct: 1   MAKKKDNTAEIGFEEQIWSAADKLRGNIDASEYKNVVLGLIFLKYISDKFDQKYQELVEE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNA 111
                G   + +     +   F+        T+ +          ++     I + ++  
Sbjct: 61  -----GEGFEEDRDEYASENIFFVPESARWKTIAAAAHTPEIGKAIDEAMRQIEAENNKL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I    +F+     L+K   L ++   F+ +++        ++   YE+ + +F     
Sbjct: 116 KGILPK-NFARQ--ELDKR-RLGEVVDLFANVKMAEKGDSRDILGRTYEYCLAKFAEAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP  VV     ++                 +YDP CG+GG    + + V    
Sbjct: 172 KNAGEFYTPACVVKTLVEVI-----------EPYHGRVYDPCCGSGGMFVQSADFVKRHQ 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +  +GQE  P T  +    + IR +++D     +       T  +DL   ++
Sbjct: 221 GNIN---DISVYGQESNPTTWKMATMNLAIRGIDADLGDHNA------DTFFEDLHKTEK 271

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + L+NPPF  K    K       K     R+  G P   + +  ++ H+ + L    N
Sbjct: 272 FDFILANPPFNLKDWGGK-------KLENDVRWQYGTPPEGNANFAWVQHMIHHL----N 320

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR  +VL++  L      + E EIR  +++ DL+E I+A+P  LF+ T I   LWI++
Sbjct: 321 RSGRMGMVLANGAL--SSQTNNEGEIRAKIVDADLVEGIIAMPDKLFYSTGIPVSLWIIT 378

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K  ++ GK   I+A D+ T +     + R   D+   ++   + +  +G         
Sbjct: 379 KNK--KQSGKTLFIDARDMGTMVSR---RLREFTDEDIAKVSTAFDAFHDG-----TLET 428

Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             G+  I          +IL           +   ++    + F   + +   +    + 
Sbjct: 429 EKGFSAIATTEDIKAQDYILTPGRY------VGVAEVEEDDEPFEEKMTRLTGEIAKCFE 482

Query: 531 WAESFVKESIKSNEAKTLKV 550
            +    ++  K+ EA    +
Sbjct: 483 ESNRLQEQIKKNLEAIGYGM 502


>gi|332535596|ref|ZP_08411364.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034980|gb|EGI71501.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
          Length = 506

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 113/551 (20%), Positives = 199/551 (36%), Gaps = 65/551 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   +   +W   +   G    + +   IL    L+ +    +     + E+Y 
Sbjct: 1   MTNSQINQDEINKAVWAACDTFRGTVDPSTYKDFILTMLFLKYISDVYQDEYDKLLEQYG 60

Query: 61  AFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  + +  + FV   G SF++  E              L +   +     K +F+D
Sbjct: 61  DQPDLIHAMMAKQRFVLPKGASFWDLYEERHKAGNGQRIDQALHAIEEANGGKLKNVFQD 120

Query: 118 FDFSSTIARL----EKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
             F++   +L    +K  +L  I ++F    L+          ++ N YE+LI+ F +  
Sbjct: 121 ISFNT--DKLGQEKQKNDILRHILEDFGKEVLNLRPSRVGSLDIIGNAYEYLIKHFAASS 178

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L  A+L           P     + DP CG+G  L      + + 
Sbjct: 179 GKSAGEFYTPPEVSDLLAAIL----------DPQEGDQICDPACGSGSLLMKCGRMIRN- 227

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST------LSK 284
             +          GQE    T A+    M +   +       +  I+ G T      L K
Sbjct: 228 --NFNGSKKYALFGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRHPMLLDK 278

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D      F    +NPPF       + A   E      GRF  G+P  + G   F+ H+  
Sbjct: 279 DGTGLLHFDIVTANPPFSLDKWGFEGADNDEF-----GRFRRGVPPKTKGDYAFISHMVE 333

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      GR  +V+    LF G A   E +IR  L+E +L++A++ LP  LFF T I 
Sbjct: 334 TLKPES---GRMGVVVPHGVLFRGAA---EGKIRAQLIEENLLDAVIGLPEKLFFGTGIP 387

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             + I   +KT+    K+  I+ +  +      GK +  +  +  ++I+D Y +RE    
Sbjct: 388 AAILIFKKQKTD---NKILFIDGSREF----KSGKNQNQLTANNIQKIIDTYKARETVDK 440

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              L           +       F L+         +     L  +         +    
Sbjct: 441 YAYLA---------TLEEIKENDFNLNIPRYVDTFEEEAEIDLVAVRTERLQLQNELKAL 491

Query: 525 QIYPYGWAESF 535
           ++   G+ +  
Sbjct: 492 EVKMEGYLKEL 502


>gi|94263933|ref|ZP_01287736.1| Type I restriction-modification system M subunit [delta
           proteobacterium MLMS-1]
 gi|93455678|gb|EAT05857.1| Type I restriction-modification system M subunit [delta
           proteobacterium MLMS-1]
          Length = 868

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 102/492 (20%), Positives = 184/492 (37%), Gaps = 77/492 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + + +  +DL G    +++ + I     L+R     +  R  +R++    G S+
Sbjct: 6   TLTHLESLLLRACDDLRGSMDASEYKEYIFGMLFLKRASDLFDQRREELRQELKQKGMSD 65

Query: 67  ID----LESFVKVAGYSFYNTSEYSLSTLGST-----------------NTRNNLE---- 101
            D    L+     +G  FY       +                      + + N+     
Sbjct: 66  ADIAIELDDPDHYSGKYFYVPPRARWNQPWQEEVVEGGEKKTVQRPALKHVKENVGTTLN 125

Query: 102 ---SYIASFSDNA-KAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTVPDRV-M 155
              + I   + +A + +    +F+  I  R      L     NF  I L  D       +
Sbjct: 126 KALAAIEDANPDALQDVLSGINFNRKIGQRTLDDDTLADFVTNFEKIPLRDDDFEFPDLL 185

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              YE LI+ F     + A +F TP +VV L   +            P    ++YDPT G
Sbjct: 186 GAAYEWLIKFFADSAGKKAGEFYTPWEVVRLCVEIC----------DPEEGMSIYDPTVG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +GG L    + + + G            GQE    T ++C   ML+  +          +
Sbjct: 236 SGGMLIQMRDFLREKGGDAGELA---LFGQEKIGTTWSICKMNMLLHGI-------SHAD 285

Query: 276 IQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           I+Q  TL +           R+   ++NPPF + + K              GRF   +P+
Sbjct: 286 IRQEDTLREPQHLDDSNELRRYDRVVANPPFSQNYIK--------KDLKFSGRFPVMMPE 337

Query: 331 I-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 ++F+ H+   L+      GR A V+    LF G     E   R++ +++  +EA
Sbjct: 338 KGKKADLMFVQHMLAVLKHD----GRMATVMPHGVLFRGGE---ERAARKYFIDHGYLEA 390

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LF+ T I   L +L+   +   R  V  INA   +     EGK +  +  +  
Sbjct: 391 VIGLPGNLFYGTGIPACLLVLNKAGSAN-RDHVLFINADREY----REGKAQNHLRPEDI 445

Query: 450 RQILDIYVSREN 461
            +I+  +   ++
Sbjct: 446 DKIIYAFRHGDD 457


>gi|304320736|ref|YP_003854379.1| type I restriction-modification system, M subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303299638|gb|ADM09237.1| type I restriction-modification system, M subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 504

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 98/483 (20%), Positives = 183/483 (37%), Gaps = 51/483 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
                   +   +W+  +   G      +   +L    L+ L           +++Y   
Sbjct: 2   NAQVKQDEINKAVWEACDTFRGTVDAGVYKDYVLTMLFLKYLSDVWNDHYEEYKKEYGDE 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                  +  E FV     +FY   +              L +   +     + +F+D  
Sbjct: 62  PELINEMMKNERFVLPESANFYALYKRRHEAGNGERIDKALHAIEEANIAKLRDVFQDIS 121

Query: 120 F--SSTIARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGA 174
           F  +       K  LL ++ ++F+   + L P  +    ++ N YE LI++F ++    A
Sbjct: 122 FNSNKLGEEAHKNELLKELLEDFAKDKLNLRPSRIGKLDIIGNAYEFLIKQFAADSGRKA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L   L+          +P     + DPTCG+G  L      V       
Sbjct: 182 GEFYTPPEVSELMAELV----------APKEGDEICDPTCGSGSLLMKCGKRVQIENKGS 231

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
           K       +GQE    T A+    M +   +       +  I+ G T+            
Sbjct: 232 KK---YALYGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPKLLDGEDSL 281

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K F   ++NPPF       +       +  +  RF  G+P  + G   F++H+   ++  
Sbjct: 282 KHFDVVVANPPFSL-----EKWGHGTAEGDKFSRFRRGIPPKTKGDYAFILHMVETMKPK 336

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A+V     LF G   S E +IR+ L+E +L++A++ LP  LF+ T I   + I
Sbjct: 337 S---GRMAVVAPHGVLFRG---STEGKIRQKLVEENLLDAVIGLPEKLFYGTGIPATILI 390

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           L  +K++     V  I+A+  +      GK +  ++++   +I++ Y +R++        
Sbjct: 391 LRKKKSDR---NVLFIDASREFI----SGKNQNQLSNNHIAKIVETYQARKSVDKYAYFA 443

Query: 470 YRT 472
              
Sbjct: 444 TPE 446


>gi|312879436|ref|ZP_07739236.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas
           paucivorans DSM 12260]
 gi|310782727|gb|EFQ23125.1| Site-specific DNA-methyltransferase (adenine-specific) [Aminomonas
           paucivorans DSM 12260]
          Length = 507

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/477 (22%), Positives = 183/477 (38%), Gaps = 55/477 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L  ++W  A  L G     D+ + I P    +RL    +       E   A   S 
Sbjct: 3   SQSQLEAYLWGAATLLRGTIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            D E       + F    +                 ++ L +   +  D    +F D  +
Sbjct: 57  GDREYAALPEQHRFQIPEDAHWKATRTQVKNVGKAIQDALRAIETANPDTLYGVFGDAQW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 117 TNK-DRLPDR-MLRELIEHFSSQTLSLAHCPEDELGVGYEFLIKQFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L
Sbjct: 175 RTVVHLMTEML----------EPKPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE    T A+    + +  +E          + +G TL+   F       +F   L
Sbjct: 222 RLYGQERNLLTSAIGRMNLFLHGIE-------DFRLVRGDTLAGPAFVEGDRLMQFDVVL 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K                 GR   G P        F  H+   ++      GR 
Sbjct: 275 ANPPYSIKQWD-----RDAWSADPWGRNIYGTPPQGRADYAFWQHIIKSMKEDT---GRC 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +
Sbjct: 327 AILFPHGVLFRNE----ELAMREKLVGHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           ERRGKV  +NA +  T  R     +  + ++   +I+  Y S  +   F+R++    
Sbjct: 383 ERRGKVLFLNAVNEVTRERA----QSFLTEEHILRIVAAYRSFTDEDSFARVVSTEE 435


>gi|167847545|ref|ZP_02473053.1| N-6 DNA methylase [Burkholderia pseudomallei B7210]
 gi|226198245|ref|ZP_03793816.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929765|gb|EEH25781.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei Pakistan 9]
          Length = 548

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 102/547 (18%), Positives = 191/547 (34%), Gaps = 70/547 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65
             L   +W  A+ L       ++  ++L    L+ +  A +  R+ +   +         
Sbjct: 23  QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRAQLAAAFGNQEDDLYL 82

Query: 66  -------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                      E         F+  +     ++ +   + ++          I + + + 
Sbjct: 83  PDAADHAEALEERDYYTMANVFWVPASARWESIRAQAKQPDIGVRIDSALEAIEADNKSL 142

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I +            + G L ++    S +          ++  +YE+ + +F +   
Sbjct: 143 KGILDK----RFGRTQLEPGRLGELVDLISTVGFGEGHHAKDLLGEVYEYFLGQFATAEG 198

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L   +             +YDP CG+GG    +   +   G
Sbjct: 199 KKGGQFYTPASVVRVLVEVLAPHEG-----------RVYDPCCGSGGMFVQSEKFIESHG 247

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE  P T  +    + IR L +D  ++ +       T  +D     R
Sbjct: 248 GKAD---DISIYGQEANPTTWRLVAMNLAIRGLAADLGKEPA------DTFHRDQHPDLR 298

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +       +  +  R+  G+P   + +  +L H+ + L     
Sbjct: 299 ADYVLANPPFNISDWGGE-------RLADDRRWAYGVPPAGNANYAWLQHILHHLSPRGQ 351

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G   A   + S      + SGE EIRR ++E D+++ +VALP  LFF T I   LW L+
Sbjct: 352 AGVVLA---NGSM---SSSQSGEGEIRRAMVEADVVDVMVALPPQLFFNTQIPACLWFLA 405

Query: 412 NRK----------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460
             K          + +RRG+V  I+A  L           R+ +D+   +I       R 
Sbjct: 406 KDKSGTPVPGGKPSRDRRGEVLFIDARKLGRMASRVV---RVFDDEDIARIASTVHRWRA 462

Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +G+      Y    G+ R ++V       ++L        E      +            
Sbjct: 463 DGEDGADEPYADVPGFCRSVQVAEIAEHGYVLTPGRYVGAEETEDDDEAFGEKMERLTAQ 522

Query: 519 LKPMMQQ 525
           L   M +
Sbjct: 523 LAEQMAK 529


>gi|167829997|ref|ZP_02461468.1| N-6 DNA methylase [Burkholderia pseudomallei 9]
          Length = 528

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 102/547 (18%), Positives = 190/547 (34%), Gaps = 70/547 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65
             L   +W  A+ L       ++  ++L    L+ +  A +  R+ +   +         
Sbjct: 3   QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRAQLAAAFGNQEDDLYL 62

Query: 66  -------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                      E         F+  +     ++ +   + ++          I + + + 
Sbjct: 63  PDAADHAEALEERDYYTMANVFWVPASARWESIRAQAKQPDIGVRIDSALEAIEADNKSL 122

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I +            + G L ++    S +          ++  +YE+ + +F +   
Sbjct: 123 KGILDK----RFGRTQLEPGRLGELVDLISTVGFGEGHHAKDLLGEVYEYFLGQFATAEG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L   +             +YDP CG+GG    +   +   G
Sbjct: 179 KKGGQFYTPASVVRVLVEVLAPHEG-----------RVYDPCCGSGGMFVQSEKFIESHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE  P T  +    + IR L +D  ++ +       T  +D     R
Sbjct: 228 GKAD---DISIYGQEANPTTWRLVAMNLAIRGLAADLGKEPA------DTFHRDQHPDLR 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +   +         R+  G+P   + +  +L H+ + L     
Sbjct: 279 ADYVLANPPFNISDWGGERLADDR-------RWAYGVPPAGNANYAWLQHILHHLSPRGQ 331

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G   A   + S      + SGE EIRR ++E D+++ +VALP  LFF T I   LW L+
Sbjct: 332 AGVVLA---NGSM---SSSQSGEGEIRRAMVEADVVDVMVALPPQLFFNTQIPACLWFLA 385

Query: 412 NRK----------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460
             K          + +RRG+V  I+A  L           R+ +D+   +I       R 
Sbjct: 386 KDKSGTPVPGGKPSRDRRGEVLFIDARKLGRMASRVV---RVFDDEDIARIASTVHRWRA 442

Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +G+      Y    G+ R ++V       ++L        E      +            
Sbjct: 443 DGEDGADEPYADVPGFCRSVQVAEIAEHGYVLTPGRYVGAEETEDDDEAFGEKMERLTAQ 502

Query: 519 LKPMMQQ 525
           L   M +
Sbjct: 503 LAEQMAK 509


>gi|150401947|ref|YP_001329241.1| N-6 DNA methylase [Methanococcus maripaludis C7]
 gi|150032977|gb|ABR65090.1| N-6 DNA methylase [Methanococcus maripaludis C7]
          Length = 501

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 104/538 (19%), Positives = 199/538 (36%), Gaps = 59/538 (10%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK A+ L G+   +D+  V+L    L+ +  A E   + +  +           E    
Sbjct: 10  LWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYNQLLLEVKDGADPEDPDEYKSN 69

Query: 75  VAGYS-FYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           + G S F+   E     +      +++          I   +   K I      + T+ +
Sbjct: 70  IHGKSVFWVPKESRWEYIQERAKLDSIGVVIDGAMELIEKENSRLKGILPKEYANPTLDK 129

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L ++      I L        ++  +YE+ + +F S   +   +F TP  +V L
Sbjct: 130 ----RRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPDCIVKL 185

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V +          +  +GQE
Sbjct: 186 LVEMI-----------EPYKGRVYDPCCGSGGMFVQSEKFVIEHSGKIN---DISIYGQE 231

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +E+D        I+ G +   DL    +  + L+NPPF     
Sbjct: 232 SNPTTWKLANMNLAIRGIEAD--------IKFGDSFHNDLHPDLKADFILANPPFNISDW 283

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                    +   +  R+  G+P   + +  ++ H+ + L      G   A   + S   
Sbjct: 284 GG-------NLLTDDKRWKHGVPPTGNANFAWVQHMIHHLSTTGIAGFVLA---NGSMSS 333

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           N    S E EIR  ++   L++AIVALP+ LF+ T I   LW +   K    +G+   I+
Sbjct: 334 N---TSSEGEIRTNIINAGLVDAIVALPSQLFYNTQIPACLWFIRRGKEVR-KGETLFID 389

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLR 485
           A ++   I     K R + ++  ++I  +Y S  NG+    +     G+ +   +    +
Sbjct: 390 AREMGEMISR---KNRSLTEEDIKKIAGVYHSWRNGEGYEDVP----GFCKSSDISDIEK 442

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
             FIL        + +          +     ++  + +        +  +KE++K  
Sbjct: 443 QGFILTPGRYVGFKEE---EDDGIPFEEKMESLVSELKKTFEEGEILDKRIKENLKKL 497


>gi|237653814|ref|YP_002890128.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|237625061|gb|ACR01751.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 508

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 118/529 (22%), Positives = 204/529 (38%), Gaps = 62/529 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +++W  A  L G     D+ + I P    +R+    +        +      S+
Sbjct: 6   TQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWDEEYEVALAE------SD 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDNAKA-IFEDFDF 120
            DL        + F   +    + +  T  N    ++     I S + +    IF D  +
Sbjct: 60  GDLSYAKFAENHRFQIPAGAHWNDVRQTPRNVGAAIQQAMRAIESANPDLLDGIFGDAPW 119

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T 
Sbjct: 120 TNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 177

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++     
Sbjct: 178 RTVVHLMTQLL----------APQADESIYDPTCGTGGMLISALDEVKRSGGEYRTLK-- 225

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE    T ++    + +  +E          I +G TL++         +RF   L
Sbjct: 226 -LYGQERNLITSSIARMNLFLHGVE-------DFQIIRGDTLAEPRHIEGDRLRRFDVIL 277

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K         +     + GR   G P        F  H+   L       GR 
Sbjct: 278 ANPPYSIKQWD-----REAWTQDKWGRNFLGTPPQGRADYAFQQHILGSLSDR----GRC 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E  +R  ++E D +EA+V L  +LF+ + + + + I + RK  
Sbjct: 329 AILWPHGVLFRNE----EQAMRSKMIEQDWVEAVVGLGPNLFYNSPMESCILICNRRKPA 384

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLD 469
           ER+G+V  I+A    T  R     +  +  + +++IL  + +  +          + +  
Sbjct: 385 ERQGRVLFIDAVGEVTRERA----QSFLKPEHQQRILGAFKAFADAPGFARVATLAELHK 440

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
                   + V RP   +      G         W       ++FW  +
Sbjct: 441 NAGNLSIPLYVKRPSASAAAAAAGGDQPASLAEAWDAWQESGRAFWQQM 489


>gi|295101615|emb|CBK99160.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 514

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 104/550 (18%), Positives = 195/550 (35%), Gaps = 74/550 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   + +     
Sbjct: 1   MAEKNTADIGFEKQIWDAACVLRGNMDASEYKGVVLGLIFLKYISDRFEDKYNQLVA--- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113
              G   + +     +   F+  +    S + +          ++     I   +   K 
Sbjct: 58  --DGDGFEEDRDEYTSEGIFFVPAGARWSDVSAKAHDPEIGQVIDDAMRAIEKENARLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L ++   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 116 ILPKNFARPELDK----RRLGEVVDLFTNIKMIEHGSEKDILGRTYEYCLSMFAEQEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV     +L                 +YDP CG+GG    +   V +   +
Sbjct: 172 GGEFFTPSCVVRTLVEVL-----------QPFKGRVYDPCCGSGGMFVQSAKFVENHSGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E D  +  +       T   D     R  
Sbjct: 221 IN---DISIYGQDSNPTTWKLAQMNLAIRGIEPDLGKYAA------DTFLDDQHPTMRAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF       +       +  +  R+  G+P  S+ +  +L H+   L      G
Sbjct: 272 YIMANPPFNLSNWGAE-------QLKDDVRWQYGMPPASNANFAWLQHMIYHLAP----G 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE +IR+ ++  DL++ I+A+PT LF+ T I   LW +S R
Sbjct: 321 GRMGMVLANGSL--SSQSGGEGDIRKNIVNADLVDCIIAMPTQLFYTTQIPVSLWFISKR 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND--------------DQRRQILDIYVSR 459
           K  +R GK   I+A  +   +     K R + D              +  ++I D Y + 
Sbjct: 379 K--KRAGKTLFIDARKMGVMVSR---KLRELTDGTKEEYKNEDGTSKNDIKKIADTYNAY 433

Query: 460 ENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            NG           G+  +    +     +IL       +E      +      +     
Sbjct: 434 VNG-----TLEDVKGFCAVVDTEKIAEQDYILTPGRYVGVEEQEDDGEPFEEKMARLTSE 488

Query: 519 LKPMMQQIYP 528
           L  + +Q + 
Sbjct: 489 LSDLFKQSHK 498


>gi|251772354|gb|EES52922.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 522

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 175/468 (37%), Gaps = 63/468 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +W+ A+ L  +    ++  V+L    L+ +  + E   + +  +           E
Sbjct: 17  LEAKLWQAADKLRNNMDAAEYKHVVLGLLFLKYVSDSFEEHHAKLTNEVSQGANPEDPDE 76

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSST 123
                A   F+   E   S L +   R  +   I          + + K +         
Sbjct: 77  Y---RADNVFWVPKEARWSVLQANAKRPEIGKVIDDAMVAIERDNKSLKGVLPKDYARPG 133

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           + +      L ++      I L         ++  +YE+ + +F S   +    F TPR 
Sbjct: 134 LDK----QRLGELIDLVGTIGLGDKEHRSRDMLGRVYEYFLSQFASAEGKRGGQFYTPRS 189

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV +   +L                 +YDP CG+GG    +   +   G        +  
Sbjct: 190 VVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEVHGGRIG---DISI 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + ++  ++ +       +  KDL    +  Y L+NPPF 
Sbjct: 236 YGQESNHTTWKLAAMNLAIRGIAANLGQENA------DSFHKDLHPDLKADYILANPPFN 289

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                         +  E  R+  G+P + + +  ++ H  + L       G A  VL++
Sbjct: 290 SSDWGGD-------RLREDRRWVYGVPPVGNANFAWVQHFISHLAP----NGVAGFVLAN 338

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L      SGE EIR+ ++E D+++ IVALP  LF+ T I   LW +S  K        
Sbjct: 339 GSL--SSNQSGEGEIRKNMVEADVVDCIVALPGQLFYSTQIPVSLWFVSRNKKNGKGLEG 396

Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSR 459
               +R G++  I+A  L + + R      R ++D+   +I   Y + 
Sbjct: 397 KPLRDRSGEILFIDARKLGFMADRT----HRDLSDEDIAKIAGTYHNW 440


>gi|27380125|ref|NP_771654.1| type I restriction-modification system specificity subunit
           [Bradyrhizobium japonicum USDA 110]
 gi|27353279|dbj|BAC50279.1| type I restriction-modification system specificity subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 879

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 187/463 (40%), Gaps = 57/463 (12%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           K  ++L G+   +++ + I     L+R     +  R  +     A G     LE+ ++  
Sbjct: 15  KACDELRGNMDASEYKEYIFGVLFLKRCSDLFDQQREKLTVNLRARGLDGQRLEALLESR 74

Query: 77  G-YSFYNTSEYSLST---LGST---NTRNNLESYIASFSDNAKAIFEDFDFSSTI--ARL 127
             Y+FY   +   +T   L           L        D  + + E  +F+  I    L
Sbjct: 75  DQYTFYVPPQARWATVRHLKEDVGNGLNAALGELERHNKDQLEDVLEHINFNRKIGQRTL 134

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                L    + F  I L  +       +   YE+LI+ F     + A +F TP DVV  
Sbjct: 135 SD-DTLVDFLQVFENIPLRDENFEFPDLLGAAYEYLIKYFADSAGKKAGEFYTPADVVRT 193

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++           P    ++YDPT G+GG L  + ++V D G     P  L   GQE
Sbjct: 194 MVEIV----------DPQPGMSIYDPTVGSGGMLIQSRDYVRDNGGD---PNNLSLAGQE 240

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPF 301
            +  T ++C   M++  +        S +I+Q +TL+K    G      RF   L+NPPF
Sbjct: 241 SQGTTWSICRMNMILHDI-------QSADIRQENTLTKPQHRGDDGELIRFDRVLANPPF 293

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            + +                GRF   +P+      ++F+ H+   L+     GGR A V+
Sbjct: 294 SQSYSA--------KDMEFKGRFVKWMPEKGKKADLMFVQHMLAVLKS----GGRMATVM 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G     E + R   ++   ++A++ LP  LF+ T I   + ++S  +  + R 
Sbjct: 342 PHGVLFRGGE---EKDAREHFIKQGWLDAVIGLPPSLFYGTGIPACILVMSKER-ADLRK 397

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            V  INA   +     EGK +  +  +   +I+D+Y  R++  
Sbjct: 398 DVLFINADREY----REGKAQNFLRPEDMSKIVDVYRRRQDVP 436


>gi|159904435|ref|YP_001548097.1| N-6 DNA methylase [Methanococcus maripaludis C6]
 gi|159885928|gb|ABX00865.1| N-6 DNA methylase [Methanococcus maripaludis C6]
          Length = 501

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 106/538 (19%), Positives = 198/538 (36%), Gaps = 59/538 (10%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK A+ L G+   +D+  V+L    L+ +  A E     +  +           E    
Sbjct: 10  LWKAADKLRGNINASDYRNVVLGLIFLKYISDAFEERYKQLLLEVKDGADPEDPDEYKSN 69

Query: 75  VAGYS-FYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
           + G S F+   E     +      +++          I   +   K I      + T+ +
Sbjct: 70  IHGKSVFWVPKESRWEYIQELAKLDSIGIVIDSAMELIEKENSRLKGILPKEYANPTLDK 129

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L ++      I L        ++  +YE+ + +F S   +   +F TP  +V L
Sbjct: 130 ----RRLGELVDLIGRITLIDREHSQDILGRVYEYFLGQFASAEGKKGGEFYTPDCIVKL 185

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++           P   R +YDP CG+GG    +   V +          +  +GQE
Sbjct: 186 LVEMI----------GPYKGR-VYDPCCGSGGMFVQSEKFVIEHSGRIN---DISIYGQE 231

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +E+D        I+ G +   DL    +  + L+NPPF     
Sbjct: 232 SNPTTWKLANMNLAIRGIEAD--------IKFGDSFHNDLHPDLKADFILANPPFNISDW 283

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                    +   +  R+  G P   + +  ++ H+ + L      G   A   + S   
Sbjct: 284 GG-------NLLTDDKRWKYGTPPTGNANFAWVQHMIHHLSTTGIAGFVLA---NGSMSS 333

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           N    S E EIR  ++   L++AIVALP+ LF+ T I   LW +   K     G+   I+
Sbjct: 334 N---TSSEGEIRTNIINAGLVDAIVALPSQLFYNTQIPACLWFVRRGKDVR-NGETLFID 389

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLR 485
           A ++   I     K R + ++  ++I  +Y S  NG+    +     G+ +   +    +
Sbjct: 390 AREMGEMISR---KNRSLTEEDIKKIAGVYHSWRNGEGYEDVP----GFCKSSDISDIEK 442

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
             FIL        + +          +     ++  + +        +  +KE++K  
Sbjct: 443 QGFILTPGRYVGFKEE---EDDGIPFEEKMESLVSELKKTFEEGEILDKQIKENLKKL 497


>gi|326386412|ref|ZP_08208035.1| type I restriction-modification system, M subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209073|gb|EGD59867.1| type I restriction-modification system, M subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 505

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 108/474 (22%), Positives = 185/474 (39%), Gaps = 57/474 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESF 72
           W   +   G      +   IL    L+ +         + R+++    A     ++ E F
Sbjct: 15  WAACDTFRGAVDAGQYKDYILVMLFLKYISDQWNEHVESYRQQFGGDEARIRRRLERERF 74

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR---LEK 129
           V   G SFY+  E              LE+  ++     + +F + DF+S        ++
Sbjct: 75  VLPEGASFYDLHERRNEANIGELINEALEAIESTNIAKLEGVFRNIDFNSESNLGRVKDR 134

Query: 130 AGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
              L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A +F TP  V  L 
Sbjct: 135 NRRLKNLLEDFAKPALDLRPSRVSEDIIGECYIYLISRFASDAGKKAGEFYTPSAVSGLL 194

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L           +P    T+ DP CG+G  L  A   V               +GQE+
Sbjct: 195 ARL----------ANPQPGNTICDPACGSGSLLIQASQQVGSDN--------FALYGQEV 236

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGK 303
              T A+    M +           +  I+   TL+           +F   L+NPPF  
Sbjct: 237 NGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDHLMKFDVVLANPPFSL 289

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                + A +   K     RF  G+P  S G   F+ H+    +      GR A+++   
Sbjct: 290 DKWGAEHAGDDPFK-----RFWRGIPPKSKGDYGFISHMIEIAKRQT---GRVAVIVPHG 341

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERR 419
            LF G    GE  IR+ L+E +L++A++ LP +LF  T I   + +    + E      R
Sbjct: 342 VLFRGG---GEGTIRKALIEENLLDAVIGLPANLFTTTGIPVAILVFDRSREEGGANADR 398

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472
             V  I+A+   T     GK + ++++     I++ Y +R E  K+S     + 
Sbjct: 399 RDVLFIDASRDCTP----GKTQNLLDEGHIDHIVETYRARAEEPKYSHRASLQE 448


>gi|312963116|ref|ZP_07777601.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6]
 gi|311282627|gb|EFQ61223.1| type I restriction enzyme M protein [Pseudomonas fluorescens WH6]
          Length = 507

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 114/540 (21%), Positives = 203/540 (37%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               +   +   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKVNQDDINKALWAACDIFRGTISADTYKDFILTMLFLKYISDVWQDHYDNYKKEYGDE 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                  +  E FV     SFY   E+             L +   +     K     +F
Sbjct: 62  PELIEEMLKNERFVLSRDASFYTLYEHRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L  + +NF+  EL+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDKLGEEKQKNTILRHLMENFARAELNLKPSRVGSLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+   L      V + 
Sbjct: 182 GQKAGEFYTPPEVSELIAELL----------DPQPGDTICDPACGSASLLMKCGRKVREH 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S          +GQE    T ++    M +   +       +  I+ G TL       +
Sbjct: 232 HSS----KQYALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTLRNPKLLDQ 280

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F    +NPPF            +E ++   GRF  G+P  + G   F++H+   
Sbjct: 281 NGQLLKFDIVTANPPFSLD-----KWGHEEAEHDPFGRFNRGIPPKAKGDFAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR A+V+    LF G   S E +IR+ L+E +L++A++ LP  LF+ T I  
Sbjct: 336 LKAKT---GRMAVVVPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + + S  KT+E    V  I+A+  +      GK + ++ ++Q   IL  Y  R N   +
Sbjct: 390 AILVFSKAKTDE---NVLFIDASRDF----KAGKNQNLLGEEQINNILLTYRHRINSDKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S     +        +  P  +    ++T +  L      ++L     +  L + + + +
Sbjct: 443 SHRTSLQEIRDNDYNLNIPRYVDTFEEETEIDLLAVRKERQQLKTQLAALELQMDEYLKE 502


>gi|30250443|ref|NP_842513.1| type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30139284|emb|CAD86436.1| possible type I restriction-modification system methylation subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 504

 Score =  329 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 120/545 (22%), Positives = 215/545 (39%), Gaps = 62/545 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +++W  A  L G     D+ + I P    +R+    +    A          S 
Sbjct: 5   SQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALA------NSG 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDNAKA-IFEDFDF 120
            DL        + F   +    + +  T  N    ++     I S + +    IF D  +
Sbjct: 59  GDLSYAQFAENHRFQIPAGAHWNDVRQTPKNVGAAIQKAMRAIESANPDLLDGIFGDAPW 118

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T 
Sbjct: 119 TNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 176

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++     
Sbjct: 177 RTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRAGGEYRTLK-- 224

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE    T ++    + +  +E          I +G TL++         ++F   L
Sbjct: 225 -LYGQERNLITSSIARMNLFLHGVEDFE-------IIRGDTLAEPKHIEGDRLRQFDVIL 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K         +   + + GR   G P        F  H+   L       GR 
Sbjct: 277 ANPPYSIKQWN-----REAWSSDKWGRNSLGTPPQGRADYAFQQHILTSL----TAKGRC 327

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +K  
Sbjct: 328 AVLWPHGVLFRNE----EQSMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKAA 383

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
            R+GKV  I+A +     R     +  +  + +++IL  Y +  +   F+++      G 
Sbjct: 384 ARKGKVIFIDAVNEVARERA----QSFLKPEHQQRILTAYKTFADVPGFAKVATLAEIGA 439

Query: 476 RRIKVLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFW--LDILKPMMQQIYPY 529
               +  PL +      I   +    +     W +     ++FW  +D L   +  +   
Sbjct: 440 NAGNLSIPLYVKRIAAAIATDSNDDAVSLRSAWDQWQADGRAFWQQMDALVETLDGLVAQ 499

Query: 530 GWAES 534
             A++
Sbjct: 500 EAADA 504


>gi|88604024|ref|YP_504202.1| N-6 DNA methylase [Methanospirillum hungatei JF-1]
 gi|88189486|gb|ABD42483.1| N-6 DNA methylase [Methanospirillum hungatei JF-1]
          Length = 532

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 108/560 (19%), Positives = 197/560 (35%), Gaps = 69/560 (12%)

Query: 6   GSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +AA+L     +W  A+ L  +    ++  V+L    L+ L  A E   S++ + Y    
Sbjct: 10  TTAANLGFEATLWAAADKLRNNMDAAEYKHVVLGLIFLKYLSDAFEEKHSSLEQAYSDPQ 69

Query: 64  GS----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIAS 106
            +           +  +     +   F+   E   S +     R  +          I  
Sbjct: 70  STWYIAEPEVRYGVIEDPDEYRSENIFWIPKEARWSYIQQNAKRPEIGKIVDDAMYAIER 129

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRR 165
            +   K I         + +      L ++      + L   +     ++  +YE+ +  
Sbjct: 130 DNAVLKNILPKEYARPGLDK----EKLGELIDLIGTLNLSDSENRSKDIIGRVYEYFLSE 185

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   +    F TPR VV    A++                 +YDP CG+GG    +  
Sbjct: 186 FASAEGKNGGQFYTPRCVVQTLVAMI-----------SPFKGRVYDPCCGSGGMFVQSEK 234

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V   G        +  +GQE  P T  +    + IR ++ D         +   +  +D
Sbjct: 235 FVEAHGGRIG---DISIYGQESNPTTWKLAKMNLAIRGIDHDLGA------EHADSFRRD 285

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           L    +  Y L+NPPF  K    ++         +  R+  G+P   + +  ++ H  + 
Sbjct: 286 LHATLKADYILANPPFNMKDWGGEN-------LKDDVRWRYGIPPTGNANYAWIQHFIHH 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L      G   A   + S   N    SGE EIR+ LLE DL++ +VALP  LF+ T I  
Sbjct: 339 LSPSGIAGFVLA---NGSMSSN---QSGEGEIRKNLLEADLVDCMVALPGQLFYSTQIPA 392

Query: 406 YLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            LW ++  ++     +RRG+V  I+A  +           R + D+   +I   Y +   
Sbjct: 393 CLWFVARNRSNGRFRDRRGEVLFIDARKMGVMRDRT---HRELTDEDIERIAGTYHAWR- 448

Query: 462 GKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           G  S        G+     +    +   +L        E                  + K
Sbjct: 449 GDASAGEYEDVPGFCASATLEEIAKHGHVLTPGRYVGAEDA---EDDGEPFAEKMTRLTK 505

Query: 521 PMMQQIYPYGWAESFVKESI 540
            + +Q+      +  +K+++
Sbjct: 506 QLSEQMEDGARLDEEIKKNL 525


>gi|323699619|ref|ZP_08111531.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. ND132]
 gi|323459551|gb|EGB15416.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 502

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 103/485 (21%), Positives = 188/485 (38%), Gaps = 54/485 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   + + ++K  +   G    + +   IL    ++ L          + +++ 
Sbjct: 1   MTTTKVNQKEINDILFKACDTFRGILNASQYKDYILAMLFVKYLSDVYRERYDELSQQFK 60

Query: 61  AFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    +  E FV   G +FY+  +   +T          E    +     + +F +
Sbjct: 61  GDKERIGRRLARERFVMPEGCTFYDLYDQRNATNVGEVINTTFEKIEDANRAKLQGVFRN 120

Query: 118 FDFS---STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVS 171
            D++   +     ++   L K  ++ +   ++L P  V +  V+ N YE+LI  F +   
Sbjct: 121 IDYNSEANLGKTKDRNRRLKKFLEDLNDPRLDLRPSRVGNLDVIGNAYEYLIANFAAGAG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L   L+          +P     + DP CG+G  L    N V    
Sbjct: 181 KKAGEFYTPPEVSELIAELV----------APQPGERICDPACGSGSLLIKCGNRVRWTS 230

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
                      +GQE+  ET A+    M +  ++          ++ G TL +       
Sbjct: 231 ED------FSLYGQEINGETWALAKMNMFLHGMD-------RARVEWGDTLREPKLIEDD 277

Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +F   ++NPPF       K A    H      RF  GLP  S     F+ H+    E
Sbjct: 278 TTMKFEVVVANPPFSLDKWGYKSAQSDPH-----NRFHRGLPPKSKADYAFISHMI---E 329

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR  +V+    LF G A   E +IR+ L+E +L++A++ LP +LFF T I   +
Sbjct: 330 TTTLESGRVGVVVPHGVLFRGGA---EGKIRQQLIEENLLDAVIGLPANLFFGTGIPAAI 386

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +    + ++    V  I+A+  +   +N    +  +  +  R+I+D Y +RE       
Sbjct: 387 LVFKRNRPDK---DVLFIDASREYADAKN----QNKLRPENVRKIVDTYKAREFVDKYAY 439

Query: 468 LDYRT 472
           +    
Sbjct: 440 VAGFD 444


>gi|94263483|ref|ZP_01287295.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93456121|gb|EAT06264.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 517

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 90/483 (18%), Positives = 175/483 (36%), Gaps = 61/483 (12%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE T + A+L   N +W  A+ + G     ++  V+L    L+ +  A +     +  +
Sbjct: 1   MTEKTTNGANLGFENKLWIMADKMRGHMDAGEYKHVVLGLIFLKYISDAFQGKYDEL--E 58

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111
                      +     A   F+   E     + +   +  +   I          + + 
Sbjct: 59  ATRDTEYTDPEDRDEYAAANIFWVPKEARWDKVQAEAPQPTIGKAIDEAMVALERENPSL 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
           K +         + +      L ++ K    I+L          +  +YE+ + +F +  
Sbjct: 119 KGVLPKDYSRPALDK----TRLGELVKTVGDIDLQARQSGVQDPLGRVYEYFLGKFAAAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP+ VV L   ++                 ++DP CG+GG    +   V   
Sbjct: 175 GKSGGEFYTPQCVVQLLVEMI-----------EPYKGRVFDPCCGSGGMFVQSERFVEAR 223

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +    + IR +++D                 DL    
Sbjct: 224 GGRLG---DIAVYGQESNPTTWKLAKMNLAIRGIDADLGPH------HADCFHNDLHKDL 274

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF               +  +  R+  G P  ++ +  ++ H  + L    
Sbjct: 275 KADYILANPPFNMSDWGSD-------RLRDDVRWKYGTPPANNANYAWIQHFIHHLAPDG 327

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G   A   + S      + S E  IR+ +++ D+I+ +VALP  LF+ T I   LW +
Sbjct: 328 IAGFVMA---NGSM---STSTSSEGAIRQAMIDQDMIDCMVALPGQLFYTTQIPVCLWFV 381

Query: 411 SNRKTEERR-------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461
           +  K  + +       G+   I+A  L + I       R ++    + I  +Y +   ++
Sbjct: 382 TRSKKADPKRGLRDRSGETLFIDARRLGSLIDRV---HRELSTADIKTITGVYHNWRNQD 438

Query: 462 GKF 464
           G +
Sbjct: 439 GDY 441


>gi|78777140|ref|YP_393455.1| Type I restriction-modification system M subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497680|gb|ABB44220.1| Type I restriction-modification system M subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 495

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 203/541 (37%), Gaps = 69/541 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + +++ N +WK  +   G    +D+   +L    ++ L    +     ++ +Y      
Sbjct: 4   TTQSTINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLDLLKAEYGDKTDR 63

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFED 117
                   K+    F      +   L       NL   +    +  +         IF  
Sbjct: 64  IEA-----KLKREKFRLDESCTFDYLIKHKEAPNLGEIMNKVLERIEEDNRDKLEGIFRS 118

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171
            DF++        E+  +L  + ++FS   ++L P  +  + V+ + YE+LI  F S+  
Sbjct: 119 IDFNNKNKLGDTKERNTILKNLIEDFSDTRLDLRPSRLEGNDVIGDAYEYLISHFASDAG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +V  L   L+           P     +YDPTCG+G  L  A   +    
Sbjct: 179 KKGGEFYTPSEVSTLLAKLV----------EPKEGEMIYDPTCGSGSLLIKASKEIGSKN 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---- 287
                      +GQE   +T A+C   M +  +           I+ G T+   L     
Sbjct: 229 --------FRLYGQEKNGQTQALCKMNMFLHEINDAV-------IEWGDTIRNPLHLQDN 273

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K F   ++NPPF      ++ A +        GRF  G P  S G   F++H+ + L 
Sbjct: 274 LLKTFDVVVANPPFSLDKWGEEIASDDSF-----GRFKYGTPPKSKGDYAFVLHMISSLN 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+  ++L    LF G     E +IR  L+E +L++ ++ LP++LFF T+I   +
Sbjct: 329 SH----GKMGVILPHGVLFRGA---SEGKIREKLIEQNLLDTVIGLPSNLFFGTSIPACI 381

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            I            +  I+A+  +      GK +  + D+   +I D Y +R   + +S 
Sbjct: 382 LIFKKN---RVHNDILFIDASREFEK----GKNQNNLTDEHIAKIFDTYKNRSEIEKYSH 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           +            +  P R     ++  +  L+A  T      +        +   ++++
Sbjct: 435 VATLEEIQENDYNLNIP-RYVDTFEEEEIIDLDATKTNIATIEIELVEIKSKMNGYLKEL 493

Query: 527 Y 527
            
Sbjct: 494 G 494


>gi|146297671|ref|YP_001181442.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411247|gb|ABP68251.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 814

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 108/487 (22%), Positives = 204/487 (41%), Gaps = 52/487 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++K A+ L G    +++ + I     L+ +    E  R  +++++ 
Sbjct: 1   MAGDKITLRQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYISDVFEEKRHELKDRFK 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAK 112
           A G S   +   ++     G +F+   +     +     +  N L   +++    +    
Sbjct: 61  AMGFSERQIHELLEDPSSYGDAFFVPEKARWGNILKLKEDVGNQLNKALSALEEANPELD 120

Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170
            + +  DF++       K   L  +  +F+  +L P        +   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQEL   T ++C   M++  +          +I+    L+  +F   
Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIN-------DAHIENEDVLTTPMFLEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              KRF   L+NPPF + + +     E+  K G     G          ++FL H+   L
Sbjct: 281 GYIKRFDRILANPPFSENYTRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   
Sbjct: 335 KDD----GVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +++  K E  + K+  INA   +      G+ +  +  +   +I+ ++  ++   K+S
Sbjct: 388 IIVINKNKPEHLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFDEKKEIPKYS 443

Query: 466 RMLDYRT 472
           R++D + 
Sbjct: 444 RLVDIKE 450


>gi|188492079|ref|ZP_02999349.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|188487278|gb|EDU62381.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|322616182|gb|EFY13098.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620877|gb|EFY17736.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623032|gb|EFY19874.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628322|gb|EFY25110.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634727|gb|EFY31458.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638706|gb|EFY35401.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322646506|gb|EFY43015.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649129|gb|EFY45570.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654495|gb|EFY50817.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660786|gb|EFY57019.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322665112|gb|EFY61300.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667856|gb|EFY64016.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671732|gb|EFY67853.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677222|gb|EFY73286.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680115|gb|EFY76154.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685456|gb|EFY81452.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193665|gb|EFZ78869.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199972|gb|EFZ85060.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204703|gb|EFZ89700.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205731|gb|EFZ90694.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213701|gb|EFZ98484.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216764|gb|EGA01488.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223409|gb|EGA07739.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323231920|gb|EGA16027.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234447|gb|EGA18534.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323237898|gb|EGA21957.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243501|gb|EGA27520.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249498|gb|EGA33412.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254258|gb|EGA38076.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255083|gb|EGA38869.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323261255|gb|EGA44843.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266620|gb|EGA50107.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271346|gb|EGA54772.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 507

 Score =  328 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 107/540 (19%), Positives = 199/540 (36%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYTLYERRYEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G +L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + I   +K      KV  I+A+  +      GK +  ++ +  ++I++ Y   +N + +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREY----KAGKNQNQLSAENIQKIVNTYREGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L       +L         ++   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRSEREQLKVELAKLETEMAGYLKE 502


>gi|320450633|ref|YP_004202729.1| type I restriction-modification system subunit M [Thermus
           scotoductus SA-01]
 gi|320150802|gb|ADW22180.1| type I restriction-modification system, subunit M [Thermus
           scotoductus SA-01]
          Length = 523

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 108/480 (22%), Positives = 192/480 (40%), Gaps = 63/480 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            ++ N++W  A  + G      F   ILP   L+RL    E   + +  ++ +   +   
Sbjct: 4   QTMENWLWSAACAIRGPVDAPKFKDYILPLIFLKRLSDVFEDEIARLSARFGSEKVARDL 63

Query: 69  LESFVKVAGY----SFYNTSEYSLSTLGST--NTRNNLESYIAS---FSDNAKAIFEDFD 119
           +E   +  G      FY   E     +          L   + +    +     + +  D
Sbjct: 64  VEK-ERQRGNVTLVRFYIPEEARWEAIRRQTVGLGQFLTDAVRAVARENPQLAGVIDMVD 122

Query: 120 FSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F++T    R+     L  + +  S   L    V   ++   YE+L+R+F     + A +F
Sbjct: 123 FNATAAGQRIVSDEHLKSLIEVLSQHRLGLADVEPDILGRAYEYLLRKFAEGQGQSAGEF 182

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR+V  L   LL           P    ++YDP CG+GG L      + +        
Sbjct: 183 YTPREVGILMARLL----------EPEPGMSVYDPACGSGGLLIKCHLRLVEKYGQKDPS 232

Query: 238 PILVP---------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             L            GQE+ P T A+     +I  +E+D        I+ G T+ +  F 
Sbjct: 233 GRLHLPSTIAPLRVFGQEINPATFAMARMNAVIHDIEAD--------IRLGDTMRQPAFR 284

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F    +NP + +K+ ++       ++N    RF  G+P  S     +L H+ 
Sbjct: 285 DGSGRLQTFDLIAANPMWNQKFPQEL------YENDPFERFRYGVPPSSSADWGWLQHML 338

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400
             L    N  GR A+VL +  +  G    G   E +IR+  +E DL+EA++ LP +LF+ 
Sbjct: 339 ASL----NERGRMAVVLDTGAVSRGSGNQGSNRERDIRKAFVEADLVEAVILLPENLFYN 394

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T     + +++ RK     G++ LINA+  +      G+ +  + ++    I ++Y   E
Sbjct: 395 TTAPGVILVINRRK--RHPGEILLINASQQFAK----GRPKNYLAEEHIETIAEVYHRWE 448


>gi|291514833|emb|CBK64043.1| type I restriction system adenine methylase (hsdM) [Alistipes
           shahii WAL 8301]
          Length = 508

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 190/544 (34%), Gaps = 77/544 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W+  +   G    + +   IL    L+ +    +       ++Y       
Sbjct: 6   TQEEINKVVWQACDTFRGVIDPSQYKDYILTMLFLKYVSDVSKAKYKEYLQRY-----DG 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDNAKA 113
               +   +    F    + S   L      +N+   I                S++   
Sbjct: 61  DTERAQRAMRRERFQVPEKSSFDYLFEHRNESNIGELIDIALADLEFANREKLSSEDGSG 120

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGS 168
           IF +  F+  +     E+   L ++  +FS   L  D      + V+ + Y  LI +F S
Sbjct: 121 IFRNISFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLENNDVIGDAYMFLIEKFAS 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  + A +F TP++V  L   L                  + DPTCG+G  L  A   V 
Sbjct: 181 DAGKKAGEFFTPKEVSTLLARL----------TKSAPGSRICDPTCGSGSLLIKAGREVG 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                         +GQEL   T A+ +  ML+   +       S  I+ G TL      
Sbjct: 231 SDN--------FSLYGQELNGSTWALAMMNMLLHGFD-------SATIRWGDTLRNPKLK 275

Query: 289 G----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF       +     E  +    RF  G+P  S G   F      
Sbjct: 276 EGDALMKFDTVVANPPFSL-----EKWGADEAADDPYNRFWRGIPPKSKGDWAF----IC 326

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    N  G+  +V+    LF G     E +IR+  +E +L+EAI+ LP +LF+ T I 
Sbjct: 327 HMLEVANEHGKVGVVVPHGVLFRGA---SEGKIRQQTVEENLVEAIIGLPANLFYGTGIP 383

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             + I +  KT      V  I+A+  + +    GK +  +  +    I+  Y      + 
Sbjct: 384 AAIAIFNKAKT---TTDVLFIDASREFEN----GKNQNRLRKEDIDHIVTTYRRFAKSEL 436

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           ++ +    + Y    V R  R     +   L       T+ +   +  +     +  +  
Sbjct: 437 AQGVVEERYAY----VAR--REELADNDYNLNIPRYVDTFEEEPEIDIAAIQREIDALET 490

Query: 525 QIYP 528
           ++  
Sbjct: 491 ELAE 494


>gi|313157419|gb|EFR56841.1| type I restriction-modification system, M subunit [Alistipes sp.
           HGB5]
          Length = 508

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 172/479 (35%), Gaps = 71/479 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W+  +   G    + +   IL    L+ +    +       ++Y       
Sbjct: 6   TQEEINKVVWQACDTFRGVIDPSQYKDYILTMLFLKYVSDVSKAKYKEYLQRY-----DG 60

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------SDNAKA 113
               +   +    F    + S   L       N+   I                S++   
Sbjct: 61  DTERAQRAMRRERFQVPEKSSFDYLFEHRNEPNIGELIDIALADLEFANREKLSSEDGSG 120

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168
           IF +  F+  +     E+   L ++  +FS   L  D      + V+ + Y  LI +F S
Sbjct: 121 IFRNISFNSSNLGETKERNARLKQLLIDFSDERLQFDESHLANNDVIGDAYMFLIEKFAS 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  + A +F TP++V  L   L                  + DPTCG+G  L  A   V 
Sbjct: 181 DAGKKAGEFFTPKEVSSLLARL----------TKSAPGSRICDPTCGSGSLLIKAGREVG 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                         +GQEL   T A+ +  ML+   +       S  I+ G TL      
Sbjct: 231 SDN--------FSLYGQELNGSTWALAMMNMLLHGFD-------SATIRWGDTLRNPKLK 275

Query: 289 G----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF       +     E  +    RF  G+P  S G   F      
Sbjct: 276 EGDALMKFDTVVANPPFSL-----EKWGADEAADDPYNRFWRGIPPKSKGDWAF----IC 326

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +    N  G+  +V+    LF G     E +IR+  +E +L+EAI+ LP +LF+ T I 
Sbjct: 327 HMLEVANEHGKVGVVVPHGVLFRGA---SEGKIRQQTVEENLVEAIIGLPANLFYGTGIP 383

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             + I +  KT      V  I+A+  + +    GK +  + D+    I+  Y     G+
Sbjct: 384 AAIAIFNKAKT---TTDVLFIDASREFEN----GKNQNRLRDEDIDHIVTTYRRFAQGE 435


>gi|325110947|ref|YP_004272015.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
 gi|324971215|gb|ADY61993.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
          Length = 560

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 109/574 (18%), Positives = 200/574 (34%), Gaps = 86/574 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T S  S A+ +WK A+ L G     ++  V+L    L+ +  + +  R  +  +  
Sbjct: 1   MNDQTASDLSYADTLWKAADALRGQVDAAEYKHVVLGLLFLKYISDSFQSRRDELEAELT 60

Query: 61  AFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108
           + G     LE+ ++      A   F+   E   + L    TR ++ + I          +
Sbjct: 61  SDGIKGEQLENLLESRDEYTAERVFWVPPESRWTNLQDQATRPDIATLIDDAILAVERDN 120

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167
            N K+          I  ++    L  +    + I  +         +  +YE+ + +F 
Sbjct: 121 PNLKSKLPRDYARRGIEPVK----LKGLIDLIADIGFNGTREKARDTLGRVYEYFLGKFA 176

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   +   +F TPR +V +   +L                 +YDP CG+GG    +   V
Sbjct: 177 AAEGKLGGEFYTPRSIVRVLVEML-----------EPYQGRIYDPACGSGGMFVQSEKFV 225

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G +      +   GQE  P T  +    + I  +E++     +       T  K   
Sbjct: 226 EAHGGN---RTDVSVFGQESNPTTWRLAHMNLAIHGIEANLGPQPA------DTFLKPQH 276

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G +  + L+NPPF       +             RF  G P + + +  ++ H  + L 
Sbjct: 277 PGLQADFVLANPPFNVSDYSGQ-------LLRGDKRFSFGDPPVGNANYAWIQHFIHHLA 329

Query: 348 -LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                GGG A  V+++  L       GE +IRR ++E DL++ IVA+P  LFF T I   
Sbjct: 330 FPNGQGGGVAGFVMANGSL--SSNTGGEGDIRRKIVEADLVDCIVAMPAQLFFTTGIPVC 387

Query: 407 LWILSNRK------------TEERRGKVQLINATDLWTSIRNEGK-------------KR 441
           LW L+  K             E R+G+   I+A  L +      +               
Sbjct: 388 LWFLTRDKTGKNIRKGTPNRPEGRQGETLFIDARKLGSMQTRTLRVLSGLEEAEYVPGTS 447

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR----------IKVLRPLRMSFILD 491
             +      +I+  Y            + + +G               + +  +  + L 
Sbjct: 448 DPLPTSDIGRIVYAYRLWRGEPQPDWWNKKEYGEWTFMPTPGFASPATIEQIAKHGYALT 507

Query: 492 KTGLARL----EADITWRKLSPLHQSFWLDILKP 521
                      E D  + +  P   +   + L+ 
Sbjct: 508 PGRYVGAEVIEEDDEPFAEKYPRLVAEVEESLRE 541


>gi|162447450|ref|YP_001620582.1| type I site-specific restriction-modification system, M
           (modification) subunit [Acholeplasma laidlawii PG-8A]
 gi|161985557|gb|ABX81206.1| type I site-specific restriction-modification system, M
           (modification) subunit [Acholeplasma laidlawii PG-8A]
          Length = 495

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 96/524 (18%), Positives = 192/524 (36%), Gaps = 62/524 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + +W+ A+ L G+ + +++  VIL    L+ +  +       ++  Y       ++ + 
Sbjct: 9   EDKLWQMADKLRGNIESSEYKHVILGLVFLKYISDSFTERYEEIKANY-----PGMEEDR 63

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124
               +   F+   +     + S           +N    I   + + K +         +
Sbjct: 64  DAYESENVFFVPKDARWEYIKSQAKQSTIGQIIDNAMVQIEKENASLKGVLPKNYARPEL 123

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +      L ++   FS      +     V+  +YE+ +++F         +F TP  +V
Sbjct: 124 DK----TRLGELIDLFSFNVGSKEARAKDVLGRVYEYFLKKF----GTTEGEFYTPPAIV 175

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            L   ++                 +YDP CG+GG    +   V +          +  +G
Sbjct: 176 KLLVNMI-----------EPYNGRVYDPCCGSGGMFVQSAKFVEEHAGKIG---NISIYG 221

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T  +    + IR ++++         + G T + D     R  Y L+NPPF  K
Sbjct: 222 QEYVATTWRLAKMNLAIRGIDANLGE------RDGDTFTNDQHKTLRADYILANPPFNIK 275

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
               +  +          R+  G P  ++ +  ++ H+ +KL       G A  VL++  
Sbjct: 276 DWGQQHLIG-------DSRWQWGTPPATNANYAWISHMISKLSPR----GIAGFVLANGS 324

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L      S E EIR+ +LE  L++ IVA+P+ LF+  +I   LW +S  K    + KV  
Sbjct: 325 LSTS--RSEEYEIRKKILEEGLVDCIVAMPSQLFYDVSIPVSLWFVSKNKNGR-KDKVLF 381

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRP 483
           I+A  +         K R + D++  +I   Y +  + K  + +D    G+ +   +   
Sbjct: 382 IDARKMGYMETR---KHRELTDEESEKIYSTYHAWRDDKDYQDID----GFCKSATLEEI 434

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
               ++L       +E                   L  + ++  
Sbjct: 435 RSHDYVLTPGRYVGIEEVEDDGIPFEEKMEKLTLELSELFEESK 478


>gi|237731957|ref|ZP_04562438.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226907496|gb|EEH93414.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 507

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 108/540 (20%), Positives = 200/540 (37%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NNKISQDTINKALWSACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G +L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F++H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + I    K      KV LI+A+  +      GK +  ++ +  ++I++ Y   +N + +
Sbjct: 390 AILIFKKHK---VDDKVLLIDASREY----KAGKNQNQLSAENIQKIVNTYREGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L       +L        + +   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAERDQLKAELAKLEMQMAGYLEE 502


>gi|85716964|ref|ZP_01047928.1| possible type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
 gi|85696243|gb|EAQ34137.1| possible type I restriction-modification system methylation subunit
           [Nitrobacter sp. Nb-311A]
          Length = 499

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 189/467 (40%), Gaps = 55/467 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +++W  A  L G    +D+ + I P    +RL    +       ++        
Sbjct: 5   TQRELESYLWGAATLLRGLIDASDYKQYIFPLMFFKRLSDVWDEDYQQALDE-------T 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLES---YIASFSDN-AKAIFEDFDF 120
            D    +  A   F      + + +     +    L S    I + +    + +F + ++
Sbjct: 58  GDEGYAINTANDRFVIPEGANWNDVRAAPRDVGRALLSAFLAIEAANPERLQGVFGNANW 117

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +   A++  +  L  + ++FS  +L    VP+  + N YE+LI++F  +    A++F T 
Sbjct: 118 TDK-AQMPDS-TLKNLIEHFSKHDLTLAAVPEDELGNGYEYLIKKFADDSGHTAQEFYTN 175

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R +VHL   +L           P    ++YDPTCGTGG L   +  V   G   +     
Sbjct: 176 RTLVHLMAQML----------EPQPGESIYDPTCGTGGMLISCLAEVKRRGGDIRTTG-- 223

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQEL   T A+    ++I  ++         +I  G+TL+   F      + F   L
Sbjct: 224 -LYGQELITITAAIARMNLVIHGVD-------DFHIASGNTLATPAFVQGDRLRTFDVVL 275

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K            +    GR   G P        F  H+ + +       GR 
Sbjct: 276 ANPPYSIK-----KWNRGAWEQDAWGRNFLGSPPQGRADYAFFQHILSSMHAKT---GRC 327

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E+E+RR L+E+D +E ++ L   LF+ + +   + I  ++K E
Sbjct: 328 AILFPHGVLFRNE----EAEMRRRLVESDRVECVLGLGPGLFYNSPMEACVVICRSQKPE 383

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            R+G++  I+A       R     +  +  + + +IL  Y +  +  
Sbjct: 384 ARKGRILFIDAVAEIARERA----QSFLRPEHQARILSAYHAFADDP 426


>gi|323937174|gb|EGB33454.1| N-6 DNA methylase [Escherichia coli E1520]
          Length = 507

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/540 (19%), Positives = 200/540 (37%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G +L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + I   +K      KV  I+A+  +      GK +  ++++  ++I+  Y   +N + +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIKKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L+      +L         ++   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEEEIDLLDVRAEREELKTELAKLETEMAGYLKE 502


>gi|111224380|ref|YP_715174.1| restriction enzyme subunit M (methylation) [Frankia alni ACN14a]
 gi|111151912|emb|CAJ63633.1| Restriction enzyme subunit M (methylation) [Frankia alni ACN14a]
          Length = 806

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/503 (22%), Positives = 188/503 (37%), Gaps = 65/503 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++  A+ L G    ++F + I     L+R     E     V  + +
Sbjct: 1   MLGRKLTLPQLERHLYAAADILRGKMDASEFKEYIFGMLFLKRASDEFEVAEERVIAQLI 60

Query: 61  AFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGST---NTRNNLESYI----ASFSDN 110
           A G S  D E           + Y   E   + L      N  + L   +       +  
Sbjct: 61  AEGRSRADAEQRATARARYRDTLYVPEEARWARLRDQVHHNVGDELNKALLALEECNNTA 120

Query: 111 AKAIFEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGS 168
            + + +  DF+ T+ +       L  +  +F+ + L  +       +   YE+LI  F  
Sbjct: 121 LEGVVQHIDFTRTVGQSRIPDRKLRDLIAHFNTVRLRNEDFEFPDLLGAAYEYLIGEFAD 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TPR VV +  AL+           P     +YDP  G+ G L  A + VA
Sbjct: 181 SAGKKGGEFYTPRAVVRMMVALV----------DPKPKMEIYDPCSGSAGMLILARDWVA 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
           + G     P  L   GQE      ++    +L+  +          +I+ G TL++ +  
Sbjct: 231 EHGGD---PRDLRLAGQEYNGGVWSISKMNLLLHGI-------PDADIRNGDTLAEPMHV 280

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +RF   LSNPPF   + ++    E         R+G          ++F+ H+  
Sbjct: 281 SGGELERFDRVLSNPPFSLNYSREGMERENRF------RWGWAPEGGKKADLMFVQHMVA 334

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G AA V+    LF G     E +IR  LL +D+IEA++ L  +LF+ T I 
Sbjct: 335 VLR----ANGVAATVMPHGVLFRGGT---ERDIRTALLNDDVIEAVIGLAPNLFYGTGIP 387

Query: 405 TYLWILSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             + +L     K  ER GKV  INA   +      G+ +  +  +   +I+  Y    + 
Sbjct: 388 ACVLVLRAPGAKPAERAGKVLFINADAEF----RAGRAQNYLMPEHVEKIVAAYREFTDI 443

Query: 463 KFSRMLDYRTFGYRRIKVLRPLR 485
                      GY ++     LR
Sbjct: 444 P----------GYAKVVTRDELR 456


>gi|313896404|ref|ZP_07829955.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974828|gb|EFR40292.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 806

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 101/481 (20%), Positives = 197/481 (40%), Gaps = 55/481 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++  L N ++     L G     +F   ++P    +R+    +       E+      S
Sbjct: 313 TTSEQLFNHLFGACNILRGPINQDEFKSYVIPILFFKRISDVYDEEYQDALEE------S 366

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN----AKAIFEDFD 119
             D E       +SF          + +   N    + + ++            +F  FD
Sbjct: 367 GGDEEYASAEDMHSFDIPEGCHWDDVRNVSENVGRAIVNAMSGIERANPLTLSGVFSSFD 426

Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +   + +     L  + ++ S +++        +M + YE+LI++F     + A +F 
Sbjct: 427 DGTWTNKNKLTDERLKDLVEHMSKVKVGNKNYTADIMGDSYEYLIKKFADMSKKNAGEFY 486

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR +V L   LL           P    ++YDP CGTGG   ++++H+ +    +    
Sbjct: 487 TPRSIVKLMVRLL----------DPRPGESVYDPACGTGGMCIESIHHMKNSKLTYGK-- 534

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294
               +GQE    T A+    + +   +          I+QG TL K LF      K F  
Sbjct: 535 ---IYGQENNLSTSAIARMNLYLHGAK-------DVQIRQGDTLRKPLFLEGGKLKTFDC 584

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG               + + GR   G P  ++    +L H+   ++      G
Sbjct: 585 VLANPPFGMS-----KWGADVFDSDQYGRNIWGCPTDANADFAWLQHMIKSMDKD---NG 636

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R A+VL    LF+G     E  IR+ +++ DL+EAI+ L + +F+ T ++  +  L+ +K
Sbjct: 637 RCAVVLPQGVLFHGGK---EGSIRKEIIKADLLEAIITLASGVFYSTGVSACILFLTKKK 693

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLDYRTF 473
             + +G++ LI+ ++++T +R     + I++D+    +   Y   E+  +  +++     
Sbjct: 694 EHKHKGRICLIDGSEVYTPMRA----QNILSDENVDTLYQFYADYEDVMERCKVVTIADV 749

Query: 474 G 474
            
Sbjct: 750 E 750


>gi|254470667|ref|ZP_05084070.1| type I restriction-modification system, M subunit [Pseudovibrio sp.
           JE062]
 gi|211959809|gb|EEA95006.1| type I restriction-modification system, M subunit [Pseudovibrio sp.
           JE062]
          Length = 504

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 183/485 (37%), Gaps = 52/485 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+    S   +    W   +   G    + +   +L    L+ +    +      +++Y 
Sbjct: 1   MSVARVSQDQINKAAWGACDTFRGVVDPSIYKDYVLTMLFLKYISDVWQDHYDGFKQQYG 60

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE- 116
                    +  E FV   G SF +  +              L +   +     + +F+ 
Sbjct: 61  NEPELIAEMMKNEVFVLPEGASFGSLYDKRHQPGNGERIDVALTAIEEANGAKLRDVFQG 120

Query: 117 -DFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPD-RVMSNIYEHLIRRFGSEVSE 172
             F+ ++     +K  +L  + ++F+   + L P  V +  V+   YE+LI RF +   +
Sbjct: 121 ISFNSNNLGDEQQKNDILRHVLEDFARDEMNLRPSRVGNLDVIGGAYEYLISRFAATAGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L   L+           P     + DPTCG+G  L      ++    
Sbjct: 181 KAGEFYTPAEVSELMAELVT----------PQEGDEICDPTCGSGSLLMKCGRQISARTG 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----- 287
                      GQE    T A+    M +         + +  I+ G T+          
Sbjct: 231 ----KKTYALFGQEAIGSTWALAKMNMFLHG-------ETNHQIEWGDTIRNPKLRTRED 279

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             ++F   ++NPPF            ++ +    GRF  GLP  + G   F+ H+   L+
Sbjct: 280 ALRKFDVVVANPPFSLD-----KWGIEQAEKDAFGRFSRGLPPKTKGDYAFISHMVETLK 334

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR A+V+    LF G   S E +IR+ L+E +L++A++ LP  LFF T I   +
Sbjct: 335 DDT---GRMAVVVPHGVLFRG---SSEGKIRKALIEENLLDAVIGLPEKLFFGTGIPAAI 388

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            I    K +     V  I+A+  +      G  +  +N+    +I+  Y +R+  +    
Sbjct: 389 LIFKKGKGDNS---VLFIDASREYVE----GTNQNQLNETHIAKIVKTYTARQTAEKYAY 441

Query: 468 LDYRT 472
           +    
Sbjct: 442 VAGLD 446


>gi|281358278|ref|ZP_06244761.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis
           vadensis ATCC BAA-548]
 gi|281315368|gb|EFA99398.1| Site-specific DNA-methyltransferase (adenine-specific) [Victivallis
           vadensis ATCC BAA-548]
          Length = 500

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/550 (18%), Positives = 203/550 (36%), Gaps = 64/550 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E T +       IW  A  L G+    ++ +V+L    L+ +    +   + + E+  
Sbjct: 1   MSENTANIG-FEKEIWDAACILRGNMDAAEYKQVVLGLIFLKYISDKFDARYNELMEE-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST----NTRNNLESY---IASFSDNAKA 113
                +   +     +   F+  +E   + +       +    ++     I   +   K 
Sbjct: 58  ---DPDFAEDRDEYTSCNVFFVPAEARWAKIAEAAHTPDIGRTIDDAMILIEKENVRLKG 114

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I++        ++   YE+ +  F  +  + 
Sbjct: 115 ILPKNFARPELDK----RRLGDVVDLFTNIKMKDHGDTRDILGRTYEYCLAMFAEQEGKK 170

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  VV      L                 +YDP CG+GG    +   V +   +
Sbjct: 171 GGEFFTPACVVKTLVEFL-----------KPYNGRVYDPACGSGGMFVQSAKFVENHQGN 219

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E++     +       T   D     +  
Sbjct: 220 IN---NISVYGQDSNPTTWKMAQMNLAIRGIEANLGNYNA------DTFFNDCHPTLKAD 270

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF               +  +  R+  G+P   + +  +L H+ + L       
Sbjct: 271 FVMANPPFNLSDWGAD-------RLKDDVRWKYGVPPSGNANFAWLQHMIHHLAP----N 319

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L       GE EIR+ ++E+DL+  IVA+PT LF+ T I   LW L   
Sbjct: 320 GKIGMVLANGSL--SSQSGGEGEIRKNIIEDDLVSCIVAMPTQLFYTTQIPVSLWFLCRN 377

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  +++GK   I+A  + T +     K R++ D   +++   + + ENG           
Sbjct: 378 K--KQKGKTCFIDARKMGTMVSR---KLRMLTDADIQELAKTFDAYENG-----TLEDVK 427

Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           G+  +    +     +IL       +E      +            L  +  + +     
Sbjct: 428 GFCAVATTAQIAEQDYILTPGRYVGIEEQEDDGEPFDEKMERLTTELSTLFAKSH---DL 484

Query: 533 ESFVKESIKS 542
           E+ +K+++K+
Sbjct: 485 ENEIKKNLKA 494


>gi|320449901|ref|YP_004201997.1| type I restriction-modification system subunit M [Thermus
           scotoductus SA-01]
 gi|320150070|gb|ADW21448.1| type I restriction-modification system, subunit M [Thermus
           scotoductus SA-01]
          Length = 522

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 118/556 (21%), Positives = 216/556 (38%), Gaps = 68/556 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L  ++W  A  + G      F   ILP   L+RL    E     V  +    GG  + L
Sbjct: 5   TLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFE---DEVARRAQVLGGEKVVL 61

Query: 70  ESFVKVAG------YSFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDNAKAIFEDF 118
           +   +           F+         +   +T     L   + +    + +   + +  
Sbjct: 62  DLLEQERQRGQVTLVRFFIPENARWQAIRRQTTGLGQYLTDAVRAVARENPSLAGVIDMV 121

Query: 119 DFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF++T    R+     L  +    S   L  + V   ++   YE+L+R+F     + A +
Sbjct: 122 DFNATAAGQRIISDEHLKSLIDVLSRHRLGLEDVEPDILGRAYEYLLRKFAEGQGQSAGE 181

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPR+V  L   LL           P    T+YDP CG+GG L      + +     + 
Sbjct: 182 FYTPREVAILMARLL----------EPEPGMTVYDPACGSGGLLIKCHLRLLERFGTMEN 231

Query: 237 PPIL--------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             +            GQE+ P T A+     +I  LE+D        I+ G T+    F 
Sbjct: 232 GHLRLPNQIKPLRLFGQEINPATFAMARMNAVIHDLEAD--------IRLGDTMRHPAFL 283

Query: 289 G-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   ++NP + +K+ ++       ++N    RF  G P  S     ++ H+ 
Sbjct: 284 DAAGRLQTFDLVVANPMWNQKFGQEL------YENDPFERFRFGAPPSSSADWGWMQHML 337

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFR 400
             L       GR A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +LF+ 
Sbjct: 338 ASLNEK----GRMAVVLDTGAVSRGSGNQGANRERDIRKAFVEADLIEAVILLPENLFYN 393

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-R 459
           T     + +++  K   + G++ LINA+ L+T     G+ +  + D+  ++I D+Y + R
Sbjct: 394 TTAPGVILVINRAK--RKPGEILLINASKLFTK----GRPKNYLADEHIQRIADLYHTWR 447

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
                S ++           +  P R     +K  +   E  +   + +   ++     L
Sbjct: 448 AEEGLSAIITKEEASRNDYNL-SPSRYVATGEKEDVLPPEEAMVLLREAEEERAAVDQEL 506

Query: 520 KPMMQQIYPYGWAESF 535
             ++  +    +  + 
Sbjct: 507 AQVLHMLGLGDFRANN 522


>gi|52082597|ref|YP_081388.1| putative Type I restriction-modification system M subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52787994|ref|YP_093823.1| hypothetical protein BLi04318 [Bacillus licheniformis ATCC 14580]
 gi|52005808|gb|AAU25750.1| putative Type I restriction-modification system M subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52350496|gb|AAU43130.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 509

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 107/549 (19%), Positives = 203/549 (36%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   +   + + +W+ A+   G    + +   IL    ++ L  A +       ++Y 
Sbjct: 1   MSEK-VTKDQINSVLWQAADTFRGKVDSSTYKDYILTMLFIKYLSDAYKEHLEEYTKRYN 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--------NAK 112
                  +      ++   F    + +   L S      +   I    +          +
Sbjct: 60  -----GDEQRIQRALSRERFVLDEQSTFDYLYSKRNDAEIGEIINKALERLENENTGKLR 114

Query: 113 AIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGS 168
            +F + DF+S        E+  +L  + ++F+ + L P  V  + V+ + Y+++I RF S
Sbjct: 115 GVFRNIDFNSEAILGKAKERNAMLRSLLEDFNKLTLKPSVVGSEDVIGDAYQYMIERFAS 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  +   +F TP     L   L+           P     +YDPTCG+G  L    N V 
Sbjct: 175 DAGKKGGEFYTPSMASELLARLV----------KPQENDRVYDPTCGSGSLLIRVANQV- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
                      +  +GQE    TH++ +  M +  ++          I+ G TL+  L  
Sbjct: 224 -------PNKKVAIYGQERNGATHSLALMNMYLHGID-------DAKIEWGDTLANPLHL 269

Query: 288 ---TGKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGPGLPKISDGSM 336
                 +F   ++NPPF                   + E       RF  G+P  S G  
Sbjct: 270 EDGKLMKFQAIVANPPFSLDKWAMGFAGEGTNDSKFKMEASLDPHRRFEWGVPPSSKGDY 329

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ H+   L       GR A +L    LF G     E +IR+ ++E +L++A++ LP  
Sbjct: 330 AFVQHMLYSLAE----NGRMATILPHGVLFRGA---SEGKIRQQIIEMNLLDAVIGLPEG 382

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T I   + +    +T +    V  I+A+      +  GK +  + +    +I+D Y
Sbjct: 383 LFYGTGIPACILVFKKNRTRK---DVLFIDASAEGNYEK--GKNQNQLREQDIAKIVDTY 437

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             RE   K+S +            +  P  +    ++  +           +    Q   
Sbjct: 438 EKRETIDKYSYVATLDEIKENDYNLNIPRYVDTFEEEEPVDMHAVKENIANIKQELQEVE 497

Query: 516 LDILKPMMQ 524
            ++ K + +
Sbjct: 498 AEMEKYLKE 506


>gi|300837084|ref|YP_003754138.1| type I restriction-modification system M subunit [Klebsiella
           pneumoniae]
 gi|299474888|gb|ADJ18712.1| type I restriction-modification system M subunit [Klebsiella
           pneumoniae]
          Length = 507

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 106/540 (19%), Positives = 199/540 (36%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKKQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G +L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGQDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + I   +K      KV  I+A+  +      GK +  ++++  ++I+  Y   +N + +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIKKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L       +L         ++   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAELAKLETEMAGYLKE 502


>gi|194436633|ref|ZP_03068734.1| type I restriction-modification system, M subunit [Escherichia coli
           101-1]
 gi|194424665|gb|EDX40651.1| type I restriction-modification system, M subunit [Escherichia coli
           101-1]
          Length = 528

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 107/540 (19%), Positives = 197/540 (36%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               +  ++   +W   +   G      +   IL    L+ +    +    + + +Y   
Sbjct: 2   NDKITQETINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDSYKAQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G  L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEALNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + I   +K      KV  I+A+  +      GK +  +++D  R I+  Y + +N + +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEDNIRTIVKTYRNGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L       +L          +   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAELAKLETQMAGYLKE 502


>gi|121595901|ref|YP_987797.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607981|gb|ABM43721.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 508

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/553 (21%), Positives = 219/553 (39%), Gaps = 64/553 (11%)

Query: 1   MTEFTG--SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M+  +   S   L +++W  A  L G     D+ + I P    +R+    +    A    
Sbjct: 1   MSHPSKRISQQELESYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALA- 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLES---YIASFSDNAKA 113
                 S  DL        + F        + +     N    ++     I + + +   
Sbjct: 60  -----NSKGDLSYAQFAENHRFQIPQGAHWNDVRQAPKNVGAAIQKAMRAIETANPDLLD 114

Query: 114 -IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF D  +++   RL     L  + ++FS   L    VP+  + N YE+LI++F  +   
Sbjct: 115 GIFGDAPWTNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGH 172

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F T R VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G 
Sbjct: 173 TAAEFYTNRTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGG 222

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
            ++       +GQE    T ++    + +  +E          I +G TL++        
Sbjct: 223 EYRTLK---LYGQERNLITSSIARMNLFLHGVEDFE-------IIRGDTLAEPKHIEGDR 272

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L+NPP+  K         +   + + GR   G P        F  H+   L  
Sbjct: 273 LRQFDVILANPPYSIKQWN-----REAWSSDKWGRNSLGTPPQGRADYAFQQHILTSL-- 325

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR+A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + 
Sbjct: 326 --TAKGRSAVLWPHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIV 379

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           I + +KT  R+GKV  I+A +  T  R     +  +  + +++IL  Y +  +   F+++
Sbjct: 380 ICNRKKTAARKGKVIFIDAVNEVTRERA----QSFLKPEHQQRILTAYKTFADVPGFAKV 435

Query: 468 LDYRTFGYRRIKVLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFW--LDILKP 521
                 G     +  PL +      I   +    +     W +     ++FW  +D L  
Sbjct: 436 ATLAEIGANAGNLSIPLYVKRIAAAIATDSNGDAVSLRSAWGQWQTDGRAFWQQMDALVE 495

Query: 522 MMQQIYPYGWAES 534
            +  +     A++
Sbjct: 496 TLDGLVAQEAADA 508


>gi|258651342|ref|YP_003200498.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Nakamurella multipartita DSM 44233]
 gi|258554567|gb|ACV77509.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Nakamurella multipartita DSM 44233]
          Length = 548

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 175/484 (36%), Gaps = 71/484 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +   L + +WK A+ L G    + +  VIL    L+ +  A +  R  +R +  A G 
Sbjct: 22  ASTMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERREQIRAELEADGI 81

Query: 65  SNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR----------------NNLESY 103
               ++ F+           F+   +   S L                      +    Y
Sbjct: 82  DEDQIDGFLDDVDEYRGHGVFWVNRDARWSYLAQHAKGIPAVGNEPPKQVGQLIDEAMDY 141

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYEH 161
           +   + + +A          + +      L ++   F+              ++  +YE+
Sbjct: 142 LMDANPSLRATLPRIYNRDNVDQ----RRLGELLDLFNSARFTGQGATKARDLLGEVYEY 197

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F     +   +F TP                 L +        +YDP CG+GG   
Sbjct: 198 FLEKFAKAEGKRGGEFYTPAS-----------VVRVLVEVLEPTRGRVYDPCCGSGGMFV 246

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                +      H+    +  +GQEL   T  +    + I  L  +         + G T
Sbjct: 247 QTEKFLEAH---HREGSEISVYGQELNERTWRMAKMNLAIHGLSGNLGP------RWGDT 297

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            ++D+    +  Y L+NPPF          ++   +N +  R+  G+P   + +  ++ H
Sbjct: 298 FARDIHPDVQADYVLANPPFN---------IKDWARNDKDPRWKFGVPPAGNANYAWIQH 348

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + +KL      GG A +V+++  +       GE  IR  L+E DL+  +VALPT LF  T
Sbjct: 349 IISKLAP----GGSAGVVMANGSMST--QSGGEGAIRAQLVEADLVSCMVALPTQLFRST 402

Query: 402 NIATYLWILSNRK------TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            I   LW  +  K      + +R G+V  I+A  +   +       R ++DD    I   
Sbjct: 403 GIPVCLWFFAKDKTVGTGGSVDRSGRVLFIDARSMGNMVDRAE---RSLSDDDIGLIAGT 459

Query: 456 YVSR 459
           + + 
Sbjct: 460 FHAW 463


>gi|281420896|ref|ZP_06251895.1| ribosomal protein L11 [Prevotella copri DSM 18205]
 gi|281405188|gb|EFB35868.1| ribosomal protein L11 [Prevotella copri DSM 18205]
          Length = 502

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 106/538 (19%), Positives = 196/538 (36%), Gaps = 62/538 (11%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +      IWK A+ L G+   + +  V+L    L+ +    E     +    
Sbjct: 1   MAKKQDTISIGFEEKIWKAADILRGNLSASQYEGVVLGLIFLKYISDRFEQKFQEL---- 56

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--------TRNNLESYIASFSDNA 111
                     +     A   F+  +E   S + +              L + I   ++  
Sbjct: 57  -QGDEYADPEDKDEYTAENIFFVPAEARWSKISAAAHTPEIGVVIDEALTA-IERENERL 114

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I         + +      L  +   F+ IE+H       ++   YE+ +++F S   
Sbjct: 115 KGILPKNFARPELDK----RRLGDVVDLFTNIEMHDAGEEKDLLGRTYEYCLQQFASLEG 170

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  +V     +L                 +YDP CG+GG    +   +    
Sbjct: 171 KNGGEFYTPSCIVRTLVEIL-----------EPYEGRVYDPCCGSGGMFVQSAKFIERHK 219

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            + +    +  +GQE  P+T  +    + IR L+++             T   D     +
Sbjct: 220 GNLRK---ISIYGQEANPDTWKMAHMNLAIRGLDANLGN------VFADTFYDDQHPTLK 270

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + L+NPPF                  E  R+  GLP   + +  ++ H+ + L     
Sbjct: 271 ADFILANPPFNLSDWGQSA-------LQEDVRWQYGLPPAGNANFAWMQHMIHHLAP--- 320

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+  +VL++  L       GE +IR+ ++E DL+E IVALP+ LF+ T I   LW +S
Sbjct: 321 -NGKIGLVLANGAL--SSQSGGEGQIRQAIIEADLVEGIVALPSQLFYSTGIPVSLWFIS 377

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K +  +GK   I+A +L T +    K R ++ D   ++I D + + + G         
Sbjct: 378 RNKAQ--KGKTVFIDARNLGTMVTR--KLRELMPDTDIKKISDTFHAFQQG-----TLED 428

Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             G+  +    +     FIL       +  D           +     LK + ++   
Sbjct: 429 EKGFCAVCTTEQIAAQDFILTPGRYVGIAEDEGDGVPFEEKMTNLTGELKQLFEESKK 486


>gi|118474825|ref|YP_892158.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118414051|gb|ABK82471.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 501

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 113/544 (20%), Positives = 207/544 (38%), Gaps = 79/544 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    +  ++ N IWK  +   G    +++   IL    ++ L    +     ++ +Y  
Sbjct: 6   TLEKTTKKTIENIIWKACDTFRGTMDGSNYKDYILTMLFVKYLSDFYKEKLELLKAEY-- 63

Query: 62  FGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA------- 113
                  LE    K+    F      +     +    +NL   I    +  +        
Sbjct: 64  ----GDKLERIEAKLKKEKFRLDESCTFDYFIANKEASNLGEIINKALEKIEEDNRQKLN 119

Query: 114 -IFEDFDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRF 166
            IF + DF+ST       ++  +L  + ++FS   ++L P  +  + ++ ++YE+LI  F
Sbjct: 120 GIFRNIDFNSTAILGDTKQRNIILKNLIEDFSDDRLDLRPSMLENNDIIGDVYEYLIAHF 179

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   +   +F TP +V  L   L+          +P     +YDPTCG+G  L      
Sbjct: 180 ASNAGKKGGEFYTPSEVSTLLAKLV----------NPQEGDMIYDPTCGSGSLLIKVSKE 229

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +               +GQE   +THA+C   M +  +           I+ G T+   L
Sbjct: 230 IHSKN--------FRLYGQEKNGQTHALCKMNMFLHEINDAV-------IEWGDTIRNPL 274

Query: 287 F----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  K F   ++NPPF      ++ A          GRF  G+P  S G   F++H+
Sbjct: 275 HLQNNLLKTFDIVVANPPFSLDKWGEEIASGDSF-----GRFKFGIPPKSKGDYAFVLHM 329

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L       G   ++L    LF G   S E +IR+ L+E +L++AI+ LP +LF+ T 
Sbjct: 330 LSSLNSH----GTMGVILPHGVLFRG---SSEGKIRQKLIEQNLLDAIIGLPANLFYGTG 382

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I   + I    +T      V  I+A+  +   +N    +  +ND    +I   Y  R + 
Sbjct: 383 IPACIMIFKKNRT---NNDVLFIDASSEFYKDKN----QNRLNDALIAKIAKTYNDRISV 435

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKP 521
                L           + +  +  + L+    +   E +      +   +   ++    
Sbjct: 436 DKYAYLA---------TIEQIEQNDYNLNIPRYVDTYEEEKPIDIQATKDEIKRIENELN 486

Query: 522 MMQQ 525
           ++Q 
Sbjct: 487 LVQN 490


>gi|260187773|ref|ZP_05765247.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis CPHL_A]
 gi|289448412|ref|ZP_06438156.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CPHL_A]
 gi|289421370|gb|EFD18571.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CPHL_A]
          Length = 540

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 99/485 (20%), Positives = 181/485 (37%), Gaps = 66/485 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G  
Sbjct: 13  STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72

Query: 66  NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111
              +E  +           F          L                N+   I    D  
Sbjct: 73  ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132

Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
                +     T+ RL          L ++   F+        +     +M  +YE+ + 
Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  VV +   +L                 +YDP CG+GG      
Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +       P  +  +GQE   ET  +    + I  +++          +   T ++
Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +  Y ++NPPF          ++   +N E  R+  G+P  ++ +  ++ H+  
Sbjct: 292 DQHPDVQMDYVMANPPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GGRA +V+++  +      +GE +IR  ++E DL+  +VALPT LF  T I 
Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396

Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             LW  +  K   ++      G+V  I+A +L   +      +R + +++  +I D + +
Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRA---KRALTNEEIVRIGDTFHA 453

Query: 459 RENGK 463
               K
Sbjct: 454 WRGSK 458


>gi|77920515|ref|YP_358330.1| type I restriction-modification system methyltransferase subunit
           [Pelobacter carbinolicus DSM 2380]
 gi|77546598|gb|ABA90160.1| type I restriction-modification system methyltransferase subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 708

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 109/467 (23%), Positives = 178/467 (38%), Gaps = 54/467 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L +++W  A  L G     D+ + I P    +RL    +       E   A   S 
Sbjct: 3   SQSQLESYLWGAATLLRGYIDAGDYKQFIFPLLFYKRLCDVYDE------ELADALEESG 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLS------TLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            D E       + F    +                 ++ L +   +  D    +F D  +
Sbjct: 57  GDQEYAALPEQHRFQIPEDAHWKATRTKVKNVGKVIQDALRAIETANPDTLYGVFGDAQW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL    +L ++ ++FS   L     P+  +   YE LI++F  +    A +F T 
Sbjct: 117 TNK-DRLPDR-MLRELIEHFSSQTLSLSNCPEDELGVGYEFLIKKFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T +L           P    ++YDPTCG+ G L  A+ H+       +    L
Sbjct: 175 RTVVHLMTEML----------EPRPGESIYDPTCGSAGMLLSAVAHLKRQNKEWR---NL 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
              GQE    T A+    + +  +E          I +G TL+   F      K+F   L
Sbjct: 222 RLFGQERNLLTSAIGRMNLFLHGIE-------DFRIVRGDTLANPAFVEGDRLKQFDVVL 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K                 GR   G P        F  H+   ++      GR 
Sbjct: 275 ANPPYSIKQWD-----RDAWSADSWGRNLYGTPPQGRADYAFWQHIIKSMKAKS---GRC 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E  +R  L+ +D++E ++ L  +LF+ + +   + I    K +
Sbjct: 327 AILFPHGVLFRNE----ELAMREKLVAHDVVECVLGLGPNLFYNSPMEACVVICRMNKPK 382

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           ERR KV  INA +  T  R     +  + DD  + I+  Y +  +  
Sbjct: 383 ERRNKVLFINAVNEVTRERA----QSFLTDDHIQHIVAAYQTFGDED 425


>gi|308378090|ref|ZP_07668665.1| putative type I restriction-modification system, M subunit
           [Mycobacterium tuberculosis SUMu009]
 gi|308353571|gb|EFP42422.1| putative type I restriction-modification system, M subunit
           [Mycobacterium tuberculosis SUMu009]
          Length = 718

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 98/485 (20%), Positives = 179/485 (36%), Gaps = 66/485 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G  
Sbjct: 191 STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 250

Query: 66  NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111
              +E  +           F          L                N+   I    D  
Sbjct: 251 ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 310

Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
                +     T+ RL          L ++   F+        +     +M  +YE+ + 
Sbjct: 311 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 368

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  VV +   +L                 +YDP CG+GG      
Sbjct: 369 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 417

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +       P  +  +GQE   ET  +    + I  +++          +   T ++
Sbjct: 418 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 469

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +  Y ++N PF          ++   +N E  R+  G+P  ++ +  ++ H+  
Sbjct: 470 DQHPDVQMDYVMANLPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 520

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GGRA +V+++  +      +GE +IR  ++E DL+  +VALPT LF  T I 
Sbjct: 521 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 574

Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             LW  +  K   ++      G+V  I+A +L   +       R + +++  +I D + +
Sbjct: 575 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 631

Query: 459 RENGK 463
               K
Sbjct: 632 WRGSK 636


>gi|298504591|gb|ADI83314.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter sulfurreducens KN400]
          Length = 716

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 102/593 (17%), Positives = 207/593 (34%), Gaps = 66/593 (11%)

Query: 3   EFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +  G+AA++     +W+ A+ L G     ++  V L    L+ +  A E   + +  +  
Sbjct: 7   QANGTAANIGYEAELWQMADALRGSMDAAEYKHVALGLLFLKYISDAFEEKHAQLESERS 66

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKA 113
                    E     A   F+   E   S L +   +  +          I   +   K 
Sbjct: 67  QGADPEDPDEY---RALNIFWVPPEARWSHLKAQAKQPTIGQLVDDAMAGIERDNPALKG 123

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSE 172
           +         + +      L ++    S I +   ++    V+  +YE+ + +F S   +
Sbjct: 124 VLPKEYARPALDK----QRLGQLIDLISNIRVGDAESRAKDVLGRVYEYFLSQFASAEGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-- 230
              +F TPR VV L   ++                 +YDP CG+ G    ++  +     
Sbjct: 180 KGGEFYTPRCVVRLLVEMI-----------EPYKGRVYDPCCGSSGMFVQSVEFIRAHAN 228

Query: 231 --GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G+       +  +GQE    T  +    + IR ++          I  G T   D F 
Sbjct: 229 GNGNSGNAKADISIYGQESNYTTWRLAKMNLAIRGIDG--------QIAHGDTFHNDRFP 280

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +  + L+NPPF               +  +  R+  G+P   + +  ++ H+   L  
Sbjct: 281 DLKADFILANPPFNISDWGGD-------RLRDDKRWQYGVPPTGNANFAWVQHMIYHLAP 333

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               G     +  +S         GE  IR+ +++ +L++ IV LP  LF+ T I   +W
Sbjct: 334 KGVAGFILGNISLTS------ETGGEDTIRKGIVDANLVDCIVTLPDRLFYSTPIPAGIW 387

Query: 409 ILSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           IL   +       +   ++  I+A+ L    ++  +  R + DD   +I   Y + +  K
Sbjct: 388 ILRRGRDFDREVNKPNREILFIDASRLG---KSVTRTHRELTDDDLERIACTYRNWQ--K 442

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR---LEADITWRKLSPLHQSFWLDILK 520
            S          RR+++   +   + L          L A    +    +H +F  +  +
Sbjct: 443 CSDAYLDVEGFCRRVELEEVIANGYNLLPAAYVNQGHLRATGGPQLHDVIHSNFRNETSQ 502

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADP 573
            + +        E  +K +         +++    F+   +     +   A+ 
Sbjct: 503 SLDRVTDLNKAFEESLKMAEAELRILEQEIEFKSMFLGDILIRSDERLGNAEE 555


>gi|184200169|ref|YP_001854376.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201]
 gi|183580399|dbj|BAG28870.1| type I restriction enzyme M protein [Kocuria rhizophila DC2201]
          Length = 521

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 108/542 (19%), Positives = 201/542 (37%), Gaps = 68/542 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T  A +L   +W  A+ L G+ + +++  V+L    L+ +    E  R  ++ +  A G
Sbjct: 7   KTKPAKTLEQTLWDAADKLRGNQEPSEYKHVVLGLVFLKYVSDRFEERREQLKGELAAEG 66

Query: 64  GSNIDLESFVK-----VAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNA 111
                +ESF++      +   F+  S      +            ++     I   + + 
Sbjct: 67  IKPERIESFLEDRDEYASQNVFWVPSLARWGYVQSVAKQPEIGQQIDQAMDLIEKENPSL 126

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFG-S 168
           + +         + +      L ++      I      D   D V+  +YE+ + +F   
Sbjct: 127 RGVLPRNYGRDGLDK----RRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGK 182

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E  + A  F TPR VV     +L                 +YDP  G+GG    +   V 
Sbjct: 183 ETGKDAGAFYTPRSVVRTLVEML-----------EPYKGRVYDPAAGSGGMFVQSAEFVK 231

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G        +  +GQE    T  +    + +R +E+D     +       + ++DL  
Sbjct: 232 AHG---GKRTDISVYGQEFTDTTWKLAKMNLALRGIEADMGTHSA------DSFTEDLHP 282

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             R  + ++NPPF             + K  +  R+  G P   + +  ++ H  + L  
Sbjct: 283 DLRADFVIANPPFNVS-------DWWDAKLADDPRWKYGTPPKGNANFAWVQHFLHHLAP 335

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G A  VL++  L      SGE E R+ L+E  L++ IVA+P  LFF T I   LW
Sbjct: 336 Y----GTAGFVLANGSL--SSKSSGEGETRQRLVEAGLVDCIVAMPDKLFFNTGIPVSLW 389

Query: 409 ILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            +S  +       R+G+V  I+A  L         K R++++D   +I   Y +  +   
Sbjct: 390 FVSKGRDGNGHRARKGEVLFIDARKLGRMESR---KLRVLDNDDIGKIAGTYHAWRDHDG 446

Query: 465 SRMLDYRTFGYRR-IKVLRPLRMSFILDKTGL-----ARLEADITWRKLSPLHQSFWLDI 518
                    G+ +  K+    +  F+L          A ++ +    K+  L    + + 
Sbjct: 447 GYQ---NETGFAKAAKIEEIEKHDFVLTPGRYVGAAEAEVDDEPIDEKIERLTTELFAEF 503

Query: 519 LK 520
            +
Sbjct: 504 ER 505


>gi|288817340|ref|YP_003431687.1| type I restriction-modification system methyltransferase subunit
           [Hydrogenobacter thermophilus TK-6]
 gi|288786739|dbj|BAI68486.1| type I restriction-modification system methyltransferase subunit
           [Hydrogenobacter thermophilus TK-6]
 gi|308750947|gb|ADO44430.1| type I restriction-modification system, M subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 813

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 103/489 (21%), Positives = 199/489 (40%), Gaps = 56/489 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++K A+ L G    +++ + I     L+R+    +  R  + ++Y 
Sbjct: 1   MEKKKITLRELETHLFKAADILRGKMDASEYKEYIFGMLFLKRMSDVFDEEREKLFKEYK 60

Query: 61  AFGGSNIDLESFVKVAG---YSFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAK 112
             G S+ +++  ++       +F+   +     +     +  N L    + +   +   +
Sbjct: 61  NLGYSDEEIKEILEDPNIYSETFFVPEKARWEYILTLKEDVGNQLNKALAALEEANPELE 120

Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170
            + +  DF++       K   L  +  +F+   L  +       +   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLIHHFNKYRLRNEDFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P     +YDPT G+GGFL +A  +V + 
Sbjct: 181 GKKGGEFYTPPSVKTLMVRLV----------KPKEGMRIYDPTVGSGGFLIEARQYVEEK 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQE    T ++C   M++  +           I+   TL+   F   
Sbjct: 231 GQN---PKNLALYGQENNGVTWSICKMNMILHGI-------PDAQIENEDTLTNPKFVEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLAN 344
              K+F   L+NPPF + +                 RF  G          ++FL H+  
Sbjct: 281 GYIKQFDIVLANPPFSQNYT--------RANMHFPERFKYGFTPETGKKADLMFLQHMIA 332

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G  A V+    LF G     E  IR  ++++DLI+AI+ LP  LF+ T I 
Sbjct: 333 SLKPD----GIMATVMPHGVLFRGGQ---EKVIREGIVKDDLIQAIIGLPPKLFYNTGIP 385

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             + +++ RK +  + K+  INA   +      G+ +  +  +   +I+ ++ +     K
Sbjct: 386 ACIIVINKRKPDHLKNKILFINADREYGE----GRNQNYLRPEDIEKIVTVFDNNLEIPK 441

Query: 464 FSRMLDYRT 472
           +SR++D + 
Sbjct: 442 YSRLVDIKE 450


>gi|161503348|ref|YP_001570460.1| hypothetical protein SARI_01421 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864695|gb|ABX21318.1| hypothetical protein SARI_01421 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 507

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 107/540 (19%), Positives = 199/540 (36%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               +  ++   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKITQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKKQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKNASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L  + ++F+G  L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRHLLEDFAGEALNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHNSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F++H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + I   +K      KV  I+A+  +      GK +  +++D  R I+  Y + +N + +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEDNIRTIVKTYRNGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  L       +L        +++   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEEEIDLLAVRAEREELKAELAKLEVEMTGYLKE 502


>gi|148544099|ref|YP_001271469.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|184153471|ref|YP_001841812.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM
           1112]
 gi|227364523|ref|ZP_03848586.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri MM2-3]
 gi|325682361|ref|ZP_08161878.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus reuteri MM4-1A]
 gi|148531133|gb|ABQ83132.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|183224815|dbj|BAG25332.1| type I restriction system DNA methylase [Lactobacillus reuteri JCM
           1112]
 gi|227070450|gb|EEI08810.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri MM2-3]
 gi|324978200|gb|EGC15150.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus reuteri MM4-1A]
          Length = 510

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 120/553 (21%), Positives = 210/553 (37%), Gaps = 67/553 (12%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           ++ + +WK A+ L G    +++  V+L    L+    + E  R  + +            
Sbjct: 9   NIEDKLWKAADALRGSMDASEYRNVVLGLIFLKYASDSFEERRQELLKT----EYPEDAE 64

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSS 122
           +  + +    F+   E   + +        +          I   +D+ + I      S 
Sbjct: 65  DPDMYLENNIFWVPQEARWAKIEHAAKTPQIGEVIDDAMTAIEKSNDSFRGILSKNYASP 124

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            + +      L ++    S I++      D  V+  +YE+ +  F S+  +   +F TPR
Sbjct: 125 DLDK----TRLGEVVDLISDIKVGTKESTDKDVLGRVYEYFLNEFASQEGKHGGEFYTPR 180

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V +   ++                 +YDP CG+GG    +   V       K    L 
Sbjct: 181 SIVKILVEMI-----------EPYKGRIYDPCCGSGGMFVQSEEFVRHHQGELK---DLH 226

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G+E  P T  +    + IR ++SD          QG T + DL  G RF+Y L+NPPF
Sbjct: 227 VFGEESNPTTWKLAKMNLAIRGIDSDLGPH------QGDTFTNDLHKGVRFNYILANPPF 280

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K    +       K  E  R+  G+P   + +  ++ H+ +KL       G+A  VL+
Sbjct: 281 NIKNWGGE-------KLQEDARWKYGVPPTGNANYAWIEHIISKLAPD----GKAGFVLA 329

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE---- 417
           +  L        E  IR+ +LE+D I+AIVALP  +F+ T I   LW +   K  E    
Sbjct: 330 NGALSTSNKE--EFAIRKAILEDDKIDAIVALPEKMFYSTGIPVSLWFVDMNKESEDERS 387

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           R+G+   I+A +L   I       R  NDD  +++ D Y +          D    G+ +
Sbjct: 388 RKGETLFIDARNLGEMIDRT---HRAFNDDDIKKVADTYHAYRGTNDQEYKDVA--GFCK 442

Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           I K+    +  ++L       L       +   +        LK   +        ES  
Sbjct: 443 IAKLDEIAKNDYVLTPGRYVGLAKQEDDGESYEVKMKRLTSELKEQFE--------ESNK 494

Query: 537 KESIKSNEAKTLK 549
            ++   +  K L 
Sbjct: 495 LQAQIKDVLKELG 507


>gi|94263106|ref|ZP_01286924.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93456477|gb|EAT06591.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 517

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 88/483 (18%), Positives = 174/483 (36%), Gaps = 61/483 (12%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MTE T + A+L   N +W  A+ + G     ++  V+L    L+ +  A +     +  +
Sbjct: 1   MTEKTTNGANLGFENKLWIMADKMRGHMDAGEYKHVVLGLIFLKYISDAFQGKYDEL--E 58

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111
                      +     A   F+   E     + +   +  +   I          + + 
Sbjct: 59  ATRDTEYTDPEDRDEYAAANIFWVPKEARWDKVQAEAPQPTIGKTIDEAMVALERENPSL 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
           + +         + +      L ++ K    I+L          +  +YE+ + +F +  
Sbjct: 119 RGVLPKDYSRPALDK----TRLGELVKTVGDIDLQARQSGVQDPLGRVYEYFLGKFAAAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP+ VV L   ++                 ++DP CG+GG    +   V   
Sbjct: 175 GKSGGEFYTPQCVVQLLVEMI-----------EPYKGRVFDPCCGSGGMFVQSERFVEAR 223

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +    + IR +++D                 DL    
Sbjct: 224 GGRLG---DIAVYGQESNPTTWKLAKMNLAIRGIDADLGPH------HADCFHNDLHKDL 274

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF               +  +  R+  G P  ++ +  ++ H  + L    
Sbjct: 275 KADYILANPPFNMSDWGGD-------RLRDDVRWKYGAPPANNANYAWIQHFIHHLAPDG 327

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G   A   + S      + S E  IR+ +++ D+I+ +VALP  LF+ T I   LW +
Sbjct: 328 IAGFVMA---NGSM---STSTSSEGAIRQAMIDRDMIDCMVALPGQLFYTTQIPVCLWFV 381

Query: 411 SNRKTEERR-------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461
           +  K  + +       G+   I+A  +   I       R ++    + I  +Y +   ++
Sbjct: 382 TRSKKADPKRGLRDRSGETLFIDARRMGNLIDRV---HRELSTADIKTITGVYHNWRNQD 438

Query: 462 GKF 464
           G +
Sbjct: 439 GDY 441


>gi|229541311|ref|ZP_04430371.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229325731|gb|EEN91406.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 509

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 105/547 (19%), Positives = 201/547 (36%), Gaps = 64/547 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +   + + +W+ A+   G    + +   IL    ++ L       +  + E   
Sbjct: 1   MVEQT-TQEKINSVLWQAADTFRGKIDSSTYKDYILTMLFIKYLSDTY---KEKLEEYTK 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAI 114
            + G    ++  +    +    TS +        +          LE      S   + +
Sbjct: 57  RYNGDEQRIQRALSRERFVLDETSTFDYLYSKRNDPEIGEIINKALERIENENSGKLRGV 116

Query: 115 FEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEV 170
           F + DF+S        E+  +L  + ++F+ + L P  + +  +  N Y+++I  F S+ 
Sbjct: 117 FRNIDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMIGLFASDA 176

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP +V  L   L+           P     +YDPTCG+G  L      V   
Sbjct: 177 GKKGGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKVAKQV--- 223

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--- 287
                    +  +GQE    TH++ +  M +  ++          I+ G TL+  L    
Sbjct: 224 -----PSKKVAIYGQERNGATHSLALMNMYLHGID-------DAKIEWGDTLANPLHLED 271

Query: 288 -TGKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
               +F   ++NPPF                   + E       RF  G+P  S G   F
Sbjct: 272 GKLMKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPSSKGDYAF 331

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+   L       GR A +L    LF G     E +IR+ ++E +L++A++ LP  LF
Sbjct: 332 VQHMLYSLAE----NGRMATILPHGVLFRGA---SEGKIRKQIIELNLLDAVIGLPEGLF 384

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T I   + +    +T +    V  I+A+      +  GK +  + +    +I++ Y  
Sbjct: 385 YGTGIPACIMVFRKDRTRK---DVLFIDASGEEHYEK--GKNQNKLREQDIEKIVETYEK 439

Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE   K+S +            +  P  +    ++  +           +    +     
Sbjct: 440 RETIDKYSYVATIDEIRENDYNLNIPRYVDTFEEEEPVDMEAVKENIANIKKELKEVEAQ 499

Query: 518 ILKPMMQ 524
           + K + +
Sbjct: 500 MEKYLKE 506


>gi|308270339|emb|CBX26951.1| hypothetical protein N47_A09800 [uncultured Desulfobacterium sp.]
          Length = 910

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 105/510 (20%), Positives = 196/510 (38%), Gaps = 78/510 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   + + L N +    +DL G    +++ + I     L+R     +  ++ +R +  
Sbjct: 2   MVKTKLTLSRLENLLLTACDDLRGSMDASEYKEYIFGMLFLKRASDLFDQRQAELRTELA 61

Query: 61  AFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGST-----------------NTRNN 99
             G S  D+   +      +G  FY       +                      + + N
Sbjct: 62  GKGMSEEDITIALNDPDNYSGKYFYVPERARWNQAWDEEVIKDGEIKIIHHPALKHLKEN 121

Query: 100 LESYIASFSDNA--------KAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTV 150
           + + +    +          + + +  +F+  I  R      L    +NF  I L  +  
Sbjct: 122 VGTMLNKALEAIEDANIDALQDVLKGINFNRKIGQRSLDDDTLADFIQNFEKIPLKDEDF 181

Query: 151 PDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +   YE LI+ F     + A +F TP +VV +   +            P    ++
Sbjct: 182 EFPDLLGAAYEWLIKYFADSAGKKAGEFYTPVEVVRVCVEIC----------DPQEGMSI 231

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+GG L    +++ +CG     P  L  +GQE    T ++C   ML+  +     
Sbjct: 232 YDPTAGSGGMLIQTRDYLQECGGD---PGELSLNGQEKIGTTWSICKMNMLLHGI----- 283

Query: 270 RDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                +I+Q  T+ + L   +     RF   L+NPPF + + K         +    GRF
Sbjct: 284 --SHADIRQADTIREPLHLDETNELKRFDRVLANPPFSQNYIK--------KELKFPGRF 333

Query: 325 GPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
              +P+      ++F+ H+ + L+      GR A V+    LF G     E   RR+ +E
Sbjct: 334 PVMMPEKGKKADLMFVQHMLSVLKHD----GRLATVMPHGVLFRGGE---ERAARRYFIE 386

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              +EAI+ LP++LF+ T I   + +++       R  V  IN    +     EGK +  
Sbjct: 387 KGYLEAIIGLPSNLFYGTGIPACIMVMNKHGAAS-RDHVLFINGDREY----REGKAQNH 441

Query: 444 INDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           +  +   +I+  Y +  +   ++R +    
Sbjct: 442 LRPEDIDKIVHAYRNGLDIPDYARKVPVTE 471


>gi|309702143|emb|CBJ01458.1| putative type I methylase [Escherichia coli ETEC H10407]
          Length = 507

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 104/478 (21%), Positives = 181/478 (37%), Gaps = 56/478 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G +L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            + I   +K      KV  I+A+  +      GK +  ++++   +I+  Y   +N +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIEKIVKTYRDGDNVE 440


>gi|260206067|ref|ZP_05773558.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis K85]
 gi|289575453|ref|ZP_06455680.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis K85]
 gi|289539884|gb|EFD44462.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis K85]
          Length = 540

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 98/481 (20%), Positives = 179/481 (37%), Gaps = 66/481 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G  
Sbjct: 13  STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72

Query: 66  NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111
              +E  +           F          L                N+   I    D  
Sbjct: 73  ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132

Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
                +     T+ RL          L ++   F+        +     +M  +YE+ + 
Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  VV +   +L                 +YDP CG+GG      
Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +       P  +  +GQE   ET  +    + I  +++          +   T ++
Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +  Y ++NPPF          ++   +N E  R+  G+P  ++ +  ++ H+  
Sbjct: 292 DQHPDVQMDYVMANPPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GGRA +V+++  +      +GE +IR  ++E DL+  +VALPT LF  T I 
Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396

Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             LW  +  K   ++      G+V  I+A +L   +       R + +++  +I D + +
Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 453

Query: 459 R 459
            
Sbjct: 454 W 454


>gi|154249204|ref|YP_001410029.1| type I restriction-modification system, M subunit [Fervidobacterium
           nodosum Rt17-B1]
 gi|154153140|gb|ABS60372.1| type I restriction-modification system, M subunit [Fervidobacterium
           nodosum Rt17-B1]
          Length = 814

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 103/489 (21%), Positives = 197/489 (40%), Gaps = 56/489 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   L   ++K A+ L G    +++ + I     L+      E  R  ++ ++ 
Sbjct: 1   MTGEKITLRQLEAHLFKAADKLRGKMDASEYKEYIFGMLFLKYASDVFEEKRRELKNEFR 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDN---AK 112
             G S   +   ++     G +F+         +     +  N L   +++  +     +
Sbjct: 61  DMGYSEEQINELLEDPNSYGDTFFVPERARWENILKLKEDVGNQLNKALSALEEANTGLE 120

Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170
            + +  DF++       K   L  +  +F+  +L P        +   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNNYKLIPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +      L  +GQEL   T ++C   M++  +           I+    L+  +F   
Sbjct: 231 GQN---SANLALYGQELNGLTWSICKMNMILHGIN-------DAQIENEDVLTNPMFLEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLAN 344
              K+F   L+NPPF + +                 RF  G    +     ++FL H+  
Sbjct: 281 GYIKKFDRILANPPFSENYS--------RANMQFTERFKYGFTPENGKKADLMFLQHMIA 332

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G  A V+    LF       E  IR  ++ +DLIEAI+ LP  LF+ T I 
Sbjct: 333 SLKD----NGVMATVMPHGVLFRSGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIP 385

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             + +++  K E  + K+  INA   +      G+ +  +  +   +I+ ++  ++   K
Sbjct: 386 ACIIVINKNKPENLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFEEKKEIPK 441

Query: 464 FSRMLDYRT 472
           +S+++D + 
Sbjct: 442 YSKLVDIKE 450


>gi|302871461|ref|YP_003840097.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574320|gb|ADL42111.1| type I restriction-modification system, M subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 814

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 104/487 (21%), Positives = 201/487 (41%), Gaps = 52/487 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   +++ A+ L G    +++ + I     L+      E  R  +R+++ 
Sbjct: 1   MASDKITLRQLETHLFRAADILRGKMDASEYKEYIFGMLFLKYTSDVFEEKRQELRDRFQ 60

Query: 61  AFGGSNIDLESFVKVA---GYSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAK 112
               S   ++  ++       +F+   +     +     +  N L   +++    +    
Sbjct: 61  NMRFSEEQIQELLEDPVSYSDAFFVPEKARWENILKLKEDVGNQLNKALSALEEANPELD 120

Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170
            + +  DF++       K   L  +  +F+  +L P        +   YE+L++ F    
Sbjct: 121 GVLKHIDFNAVKGKTRLKDQQLIDLINHFNKYKLTPSNFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    ++YDPT G+GGFL +A ++V + 
Sbjct: 181 GKKGGEFYTPSHVKKLMVRLV----------KPREGMSIYDPTVGSGGFLIEAFHYVEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L  +GQEL   T ++C   M++  +          +I+    L+  +F+  
Sbjct: 231 GQN---PRNLALYGQELNGLTWSICKMNMILHGIN-------DAHIENEDVLTTPMFSEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              KRF   L+NPPF + + +     E+  K G     G          ++FL H+   L
Sbjct: 281 GYIKRFDRILANPPFSENYSRANMQFEERFKYGFTPENG------KKADLMFLQHMIASL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G  A V+    LF G     E  IR  ++ +DLIEAI+ LP  LF+ T I   
Sbjct: 335 KDD----GVMATVMPHGVLFRGGQ---EKVIREGIVRDDLIEAIIGLPPKLFYNTGIPAC 387

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +++  K E  + K+  INA   +      G+ +  +  +   +I+ ++  ++   K+S
Sbjct: 388 IIVINKNKPEHLKNKILFINADREYGE----GRNQNFLRPEDIEKIVTVFDEKKEIPKYS 443

Query: 466 RMLDYRT 472
            ++D + 
Sbjct: 444 SLVDIKE 450


>gi|163798238|ref|ZP_02192170.1| type I restriction-modification system, M subunit [alpha
           proteobacterium BAL199]
 gi|159176486|gb|EDP61069.1| type I restriction-modification system, M subunit [alpha
           proteobacterium BAL199]
          Length = 505

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 187/489 (38%), Gaps = 58/489 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           MT    +   +    W   +   G      +   IL    L+ +           R++Y 
Sbjct: 1   MT-DQLTQQQVNQTAWAACDTFRGVVDAGQYKDYILVMLFLKYISDHWNDHLETYRKQYG 59

Query: 60  --LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              A     ++ E FV   G SFY+  E              LE    +     + +F +
Sbjct: 60  GDEARIRRRLERERFVLPEGASFYDLYEARNEANIGERINIALERIEDTNRAKLEGVFRN 119

Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            DF+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  +
Sbjct: 120 IDFNSEANLGRVKDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  V  L   L           +P    T+ DP CG+G  L  A   V     
Sbjct: 180 KAGEFYTPSAVSRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEEVGSEN- 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
                     +GQE+   T A+    M +           +  I+   TL+         
Sbjct: 229 -------FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDH 274

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F   ++NPPF       ++A   + K     RF  G+P  S G   F+ H+      
Sbjct: 275 LMKFDVVVANPPFSLDKWGAENADTDQFK-----RFWRGIPPKSKGDYGFITHMIEIARR 329

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + 
Sbjct: 330 QS---GRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAIL 383

Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463
           +    + +    E R  V  I+A+  +T     GK + ++++    ++L+ Y SR   + 
Sbjct: 384 VFDRSREQGGANEARRDVLFIDASKEFTP----GKTQNVMDEAHIGKVLETYASRAEIEK 439

Query: 464 FSRMLDYRT 472
           +S       
Sbjct: 440 YSHRASPEE 448


>gi|15842294|ref|NP_337331.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31793930|ref|NP_856423.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium bovis AF2122/97]
 gi|121638634|ref|YP_978858.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215404725|ref|ZP_03416906.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|215412570|ref|ZP_03421298.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215428188|ref|ZP_03426107.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|215431697|ref|ZP_03429616.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis EAS054]
 gi|215447008|ref|ZP_03433760.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T85]
 gi|219558766|ref|ZP_03537842.1| putative type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|224991126|ref|YP_002645815.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254232854|ref|ZP_04926181.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis C]
 gi|254365407|ref|ZP_04981452.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis str. Haarlem]
 gi|260201885|ref|ZP_05769376.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis T46]
 gi|289444300|ref|ZP_06434044.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T46]
 gi|289570935|ref|ZP_06451162.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|289746559|ref|ZP_06505937.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|289751413|ref|ZP_06510791.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|289754861|ref|ZP_06514239.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis EAS054]
 gi|289758883|ref|ZP_06518261.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis T85]
 gi|294994150|ref|ZP_06799841.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium tuberculosis 210]
 gi|298526223|ref|ZP_07013632.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|13882588|gb|AAK47145.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis CDC1551]
 gi|31619524|emb|CAD94962.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM
           (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium bovis
           AF2122/97]
 gi|121494282|emb|CAL72760.1| Possible type I restriction/modification system dna methylase hsdM
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124601913|gb|EAY60923.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis C]
 gi|134150920|gb|EBA42965.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis str. Haarlem]
 gi|224774241|dbj|BAH27047.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289417219|gb|EFD14459.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T46]
 gi|289544689|gb|EFD48337.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T17]
 gi|289687087|gb|EFD54575.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis 02_1987]
 gi|289692000|gb|EFD59429.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis T92]
 gi|289695448|gb|EFD62877.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis EAS054]
 gi|289714447|gb|EFD78459.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis T85]
 gi|298496017|gb|EFI31311.1| type I restriction system adenine methylase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|323718603|gb|EGB27767.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904371|gb|EGE51304.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis W-148]
          Length = 540

 Score =  326 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 99/485 (20%), Positives = 180/485 (37%), Gaps = 66/485 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G  
Sbjct: 13  STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72

Query: 66  NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111
              +E  +           F          L                N+   I    D  
Sbjct: 73  ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132

Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
                +     T+ RL          L ++   F+        +     +M  +YE+ + 
Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  VV +   +L                 +YDP CG+GG      
Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +       P  +  +GQE   ET  +    + I  +++          +   T ++
Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +  Y ++NPPF          ++   +N E  R+  G+P  ++ +  ++ H+  
Sbjct: 292 DQHPDVQMDYVMANPPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GGRA +V+++  +      +GE +IR  ++E DL+  +VALPT LF  T I 
Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396

Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             LW  +  K   ++      G+V  I+A +L   +       R + +++  +I D + +
Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 453

Query: 459 RENGK 463
               K
Sbjct: 454 WRGSK 458


>gi|307353814|ref|YP_003894865.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanoplanus petrolearius DSM 11571]
 gi|307157047|gb|ADN36427.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanoplanus petrolearius DSM 11571]
          Length = 500

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 103/537 (19%), Positives = 192/537 (35%), Gaps = 62/537 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  L G+   +++  V+L    L+ +    E   +A+     
Sbjct: 1   MAENNSANIGFEQEIWSAACVLRGNMDASEYKHVVLGLIFLKYISDKFEQKYNAL----- 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113
              G   + +    +A   FY   E     +            ++     I   +   K 
Sbjct: 56  KEEGDGFEEDEDEYLAEGIFYVPPEARWDAIAKKAHTPEIGTTIDDAMRAIEKKNKRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L ++   F+ I++        ++   YE+ + +F  +  + 
Sbjct: 116 ILPKTFARPELDK----RRLGEVVDLFTNIQMADHGDSKDILGRAYEYCLAKFAEQEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV     +L                 +YDP CG+GG    +   + +   +
Sbjct: 172 AGEFYTPACVVKTIVEVL-----------QPCQGRVYDPCCGSGGMFVQSAIFIENHRGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQ+  P T  +    + IR +E+D  +  +       T   DL    +  
Sbjct: 221 IN---NISVYGQDSNPTTWKMAQMNLAIRGIEADLGKFSA------DTFYNDLHPTLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF               K  +  R+  G+P   + +  ++ H+   L       
Sbjct: 272 FIMANPPFNLSNWGAD-------KLADDPRWKYGIPPSGNANFAWMQHMIYHLAPK---- 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L       GE EIR+ ++E DL+E IVA+P  LF+ T I   LW ++  
Sbjct: 321 GRLGLVLANGSL--SSQSGGEGEIRKNIVEADLVECIVAMPPQLFYTTQIPVSLWFINRD 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRM 467
           K  +++ K   I+A +          K R +  ++   I       E G       FS +
Sbjct: 379 K--KQKRKTLFIDARNKGEMRTR---KLRELTQEEIELIGKTVSQFEAGTLEEKKGFSAV 433

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +       +   +L P R   I D              +L+      +++  K   +
Sbjct: 434 VSTEDIAKQDY-ILTPGRYVGIADVEDDGEPFEQK-MERLTGELSELFVESKKAEEE 488


>gi|227530269|ref|ZP_03960318.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
 gi|227349823|gb|EEJ40114.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 116/563 (20%), Positives = 213/563 (37%), Gaps = 68/563 (12%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M   T S   S+ + +WK A+ L G    +++  V+L    L+ +  + E   + + +  
Sbjct: 1   MKMATKSKELSIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLK-- 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112
                     +  + ++   F+   E     +  +     +   I S        +D+ +
Sbjct: 59  --SDYPEDAEDPDMYLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLR 116

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVS 171
            +      S  + +      L ++    S I L         ++  +YE+ +  F S+  
Sbjct: 117 GVLSKNYASPDLDK----TRLGEVVDLISDISLGDKHAKQSDILGRVYEYFLNEFASQEG 172

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR +V     ++                 +YDP CG+GG    +   V +  
Sbjct: 173 KKGGEFYTPRSIVRTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSDKFVQEHQ 221

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +G+E  P T  +    + IR ++++          QG T + DL  G+R
Sbjct: 222 GKIG---DLSVYGEESNPTTWKLAKMNLAIRGIDNNLGPH------QGDTFTNDLHKGER 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + L+NPPF  K            K  E  R+  G+P + + +  ++ H+ +KL     
Sbjct: 273 FDFILANPPFNVKNWNGD-------KLREDARWKYGVPPVGNANYAWIEHIISKLAPD-- 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A  VL++  L        E  IR+ LLE+D I+AIVA+P+ +F+ T I   LW + 
Sbjct: 324 --GKAGFVLANGALSTSTKE--EYTIRKALLEDDKIDAIVAMPSQMFYSTGIPVSLWFID 379

Query: 412 NRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
             K       R+G+   I+A DL   I       R  + D  +++ D Y +         
Sbjct: 380 MNKESPDERNRKGETLFIDARDLGEMIDRT---HRAFSKDDIKKVADTYHAYRGTNKQEY 436

Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            D    G+ +I K+    +  ++L       L       +   +        LK   +  
Sbjct: 437 KDVA--GFCKIAKLDEIAKNDYVLTPGRYVGLAKQADDGEPYEVKMKRLTGELKKQFE-- 492

Query: 527 YPYGWAESFVKESIKSNEAKTLK 549
                 ES   ++   +  K L 
Sbjct: 493 ------ESNKLQAEIKDVLKGLG 509


>gi|110799934|ref|YP_696989.1| type I restriction-modification system, M subunit [Clostridium
           perfringens ATCC 13124]
 gi|110674581|gb|ABG83568.1| type I restriction-modification system, M subunit [Clostridium
           perfringens ATCC 13124]
          Length = 505

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 114/471 (24%), Positives = 207/471 (43%), Gaps = 52/471 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-GS 65
           +   L + +W+ A+ L G+    ++   I     L+RL    +  R   R+++L  G   
Sbjct: 5   TLQELESTLWQCADILRGELSAAEYKDYIFGMLFLKRLNDEFDEEREERRKEFLEDGLDK 64

Query: 66  NIDLESFVKVAGY-SFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAK-----AIFED 117
              +E     + Y +F+   +     L +   N    L+    +  D  K      +   
Sbjct: 65  EEVIELLEDPSIYETFFVPEQARWEKLRNLTLNIGPELDKAFKALEDEPKNSELVGVLST 124

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +++    ++     L ++   FS + L       + ++ + Y++LI++F  +  +   +
Sbjct: 125 TNYNDK-EKVPDKK-LAQLLVLFSTVNLANSNLASEDMLGDAYQYLIKQFADQGGKKGGE 182

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +VV + T +L           P     +YDPTCG+GG L  ++ +V   G +   
Sbjct: 183 FYTPTEVVKVITNIL----------KPQEGDRIYDPTCGSGGMLIQSIEYVKKHGGN--- 229

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
           P  L   GQE+   T A+C   ML    +         +IQ+G T+ +   T     K F
Sbjct: 230 PKNLSLFGQEINLSTWAICKMNMLFHGAKG-------ADIQKGDTIREPKHTEGGALKVF 282

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF  K    +     E       RF  G+P  S G + F+ H+   L +    
Sbjct: 283 DKVLANPPFSLKNWGAE-----EASYDAFHRFTYGIPPKSYGDLAFVEHMLGSLNMK--- 334

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+ A V+    LF G   S E +IR+  +E+DLIEA++ LP +LF+ T I   + +L+ 
Sbjct: 335 -GKMASVVPHGVLFRG---SAEGKIRKGFIEDDLIEAVIGLPQNLFYGTGIPAAILVLNK 390

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            K+EER+ K+  I+ ++ +     +G K   + ++   +I+  +   E+ +
Sbjct: 391 AKSEERKNKILFIDGSNDFV---KQGNK-NKLREEDIEKIITAFDKFEDVE 437


>gi|59713718|ref|YP_206493.1| DNA methylase M [Vibrio fischeri ES114]
 gi|59481966|gb|AAW87605.1| DNA methylase M [Vibrio fischeri ES114]
          Length = 493

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 125/545 (22%), Positives = 214/545 (39%), Gaps = 71/545 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + L  ++ K A  L G    +DF   I P    +R+    +       E+      S+
Sbjct: 6   TLSQLEQYLSKAAWILKGPVDASDFKVYIFPLLFFKRISDVYDEEYRVALEE------SD 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDF 120
            D E       + F   +      +  T         + L     +  +    IF D  +
Sbjct: 60  GDEEYASMPEMHRFEIPTGCHWRDVRETTTSVGITIEDALRGIEQANQEYLYGIFGDAQW 119

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S+   +L    LL  + ++FS   L    V   ++ N YE+LI+ F    ++ A +F TP
Sbjct: 120 SNK-NKLSD-ELLINLVEHFSQYTLGNQNVEPDMLGNAYEYLIKHFADLTNKKAGEFYTP 177

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL   +L           P    T+YDP CGTGG L + ++H+ D    ++     
Sbjct: 178 RSVVHLLGMIL----------DPHEGETIYDPACGTGGMLLECVDHLKDNKEDYRTLK-- 225

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
              GQE    + ++    M +  +E          I +G TL    F      K F   +
Sbjct: 226 -LFGQEKNLTSSSIARMNMFLHGIEDFE-------ILRGDTLRHPAFFEADGLKTFDCVI 277

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  K     D   +   N   GR   G+P   +G M ++ H+   L    N  GR 
Sbjct: 278 ANPPFSLK-----DWGSENWANDPYGRNIAGVPPKGNGDMAWVQHMVKSL----NSTGRM 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +VL    LF   A   E +IR+ LL+ D++EA++ L  ++F+ T +A  + +    K  
Sbjct: 329 TVVLPHGALFRKAA---EGKIRKQLLDQDMLEAVIGLGPNVFYGTQLAACVMVFKQNKPA 385

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           +++GKV  I+A+D        G+ +  +  +  +QI D Y + ++ +           Y 
Sbjct: 386 DKKGKVMFIDASDQI----RVGRAQNFLEPNHVQQIYDWYHNYQDVEN----------YV 431

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           ++  +  L             L   +   K+   +     + +  + Q       AE   
Sbjct: 432 KVASMDEL-------AENDYNLNIPLYVEKIIEDNLPSVEEAMADLKQAWQASLEAEEKF 484

Query: 537 KESIK 541
           K  +K
Sbjct: 485 KSVLK 489


>gi|312973900|ref|ZP_07788071.1| type I restriction-modification system, M subunit [Escherichia coli
           1827-70]
 gi|310331434|gb|EFP98690.1| type I restriction-modification system, M subunit [Escherichia coli
           1827-70]
          Length = 507

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 104/478 (21%), Positives = 180/478 (37%), Gaps = 56/478 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +E+Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDEYKEQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G +L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            + I   +K      KV  I+A+  +      GK +  ++ +   +I+  Y   +N +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSAENIEKIVKTYRDGDNVE 440


>gi|120401062|ref|YP_950891.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1]
 gi|119953880|gb|ABM10885.1| N-6 DNA methylase [Mycobacterium vanbaalenii PYR-1]
          Length = 544

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 101/481 (20%), Positives = 182/481 (37%), Gaps = 66/481 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G  
Sbjct: 16  STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRTELEADGLD 75

Query: 66  NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111
              +E  ++          F          L                N+   I    D  
Sbjct: 76  AEQIEDLIEDPEEYQGYGVFVVPPGARWKFLAENAKGLPAAGGEPAKNIGQLIDEAMDAV 135

Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
                +     T+ RL          L ++   F+        D     +M  +YE+ + 
Sbjct: 136 MK--ANPTLQGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGDGRARDLMGEVYEYFLG 193

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  VV +   +L                 +YDP CG+GG      
Sbjct: 194 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSRGRVYDPCCGSGGMFVQTE 242

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +       P  +  +GQE   ET  +    + I  +++          + G T ++
Sbjct: 243 KFIYEHDGD---PKEIAVYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWGDTFAR 294

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +  Y L+NPPF          ++   +N E  R+  G+P  ++ +  ++ H+  
Sbjct: 295 DQHPDVQMDYVLANPPFN---------IKDWARNEEDARWRFGVPPANNANYAWIQHILY 345

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GG+A +V+++  +      +GE +IR  ++E DL+  ++ALPT LF  T I 
Sbjct: 346 KLAS----GGKAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMIALPTQLFRSTGIP 399

Query: 405 TYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             +W  +  KT       +R G+V  I+A ++   +       R ++DD   +I D + +
Sbjct: 400 VCVWFFAKDKTAGKQGSVDRSGQVLFIDAREMGYMVDRAE---RALSDDDIVKIGDTFHA 456

Query: 459 R 459
            
Sbjct: 457 W 457


>gi|83720663|ref|YP_443257.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
 gi|257139493|ref|ZP_05587755.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
 gi|83654488|gb|ABC38551.1| type I restriction system adenine methylase [Burkholderia
           thailandensis E264]
          Length = 518

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 109/478 (22%), Positives = 190/478 (39%), Gaps = 63/478 (13%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              ++K A+ L G+ + +D+  V L    L+ +  A E    A+  +      +    E 
Sbjct: 18  EAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLAE--DVRAAEDKDEY 75

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTI 124
               A   F+   E   S L +      + + I          +++ K +         +
Sbjct: 76  L---ADNVFWVPKEARWSHLQANAKLPAIGTLIDDAMRAIEKDNESLKGVLPKDYARPAL 132

Query: 125 ARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            ++    +L ++    SGI L+ +      ++  +YE+ + +F     +   +F TPR V
Sbjct: 133 NKV----MLGELIDLISGIALNEEGDRSKDILGRVYEYFLGQFAGAEGKRGGEFYTPRSV 188

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V +   +L                 +YDP CG+GG    +   V + G        +  +
Sbjct: 189 VRVLVEML-----------EPYSGRVYDPCCGSGGMFVQSEKFVHEHGGRIG---DIAIY 234

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPF 301
           GQE    T  +    + +R ++SD        I+  +  +  KD     +  Y L+NPPF
Sbjct: 235 GQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLKADYVLANPPF 286

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                          +  E  R+  G P + + +  +L H+ + L       G A +VL+
Sbjct: 287 NISDWGGD-------RLREDVRWKFGAPPVGNANYAWLQHIFHHLAP----NGTAGVVLA 335

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----- 416
           +  +      SGE EIRR ++E D ++ +VALP  LF+ T I   LW L+  K       
Sbjct: 336 NGSM--SSNQSGEGEIRRAMIEADAVDCMVALPGQLFYSTQIPACLWFLARNKNPGGGLR 393

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473
           +RRG+V  I+A  L   I      RR +NDD  ++I D Y +     +     D   F
Sbjct: 394 DRRGQVLFIDARKLGVLIDRT---RRELNDDDIKRIADSYHAWRGEKEAGEYADVLGF 448


>gi|323972572|gb|EGB67775.1| N-6 DNA methylase [Escherichia coli TA007]
          Length = 507

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 104/540 (19%), Positives = 200/540 (37%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               S  ++   +W   +   G      +   IL    L+ +    +      +++Y   
Sbjct: 2   NDKISQDTINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDDYKKQYGDA 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                + +  E FV     SFY   E              L +   +     K     +F
Sbjct: 62  PELIEAMMANERFVLPKSASFYALYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L ++ ++F+G +L+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDRLGEEKQKNTILRQLLEDFAGEDLNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    T+ DP CG+G  L      +   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDTICDPACGSGSLLMKCGRKI--- 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 229 -VSGHDSRNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E +N + GRF  G+P  + G   F+ H+   
Sbjct: 281 NGNLMLFDIVTANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+    G GR  +V+    LF G   S E +IR+ +++ +L++A++ LP  LF+ T I  
Sbjct: 336 LKP---GTGRMGVVVPHGVLFRG---SSEGKIRQKMIDENLLDAVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + I   +K      KV  I+A+  +      GK +  ++++  ++I+  Y   +N + +
Sbjct: 390 AILIFKKQK---VDDKVLFIDASREF----KAGKNQNQLSEENIKKIVKTYRDGDNVEKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +   +        +  P  +    ++  +  +       +L        +++   + +
Sbjct: 443 AYLASLKEIQDNDYNLNIPRYVDTFEEEDEIDLVAVRAEREQLKVELAKLEVEMAGYLKE 502


>gi|227539167|ref|ZP_03969216.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240849|gb|EEI90864.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 513

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/558 (18%), Positives = 206/558 (36%), Gaps = 67/558 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T +   L   +W+ A+ L  +    ++  V+L    L+ +  A +     ++      G
Sbjct: 1   MTNTLQ-LEKTLWQAADKLRNNMDAAEYKHVVLGLIFLKYISDAFDEHYEHLKSIEDQTG 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKAIFE 116
               D + +   A   FY         L           +++     I   + + K +  
Sbjct: 60  ADPEDKDEY--TADKIFYVPPSARWKWLQGRAKLPTIGKDIDDAMDAIEKDNPSLKGVLP 117

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGSEVSEGA 174
                  + +      L ++      I L  +       V+  ++E+ + +F     +  
Sbjct: 118 KDYARPALDK----QRLGELIDLIGSITLSKNGSGKGKDVLGFVFEYFLGQFADAEGKKG 173

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP+ +V+L   +L          +P   + +YD  CG+GG    +   +       
Sbjct: 174 GQFYTPQSIVNLLVEIL----------APEAEKRVYDGACGSGGMFVQSERFIEIHEHRK 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +   GQE  P T+ +    + IR ++          I+ G TL  D F   +  Y
Sbjct: 224 GK---ISIFGQESNPTTYKLAKMNLAIRGID--------AKIELGDTLMNDKFPELKVDY 272

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF         A        E  ++  G+P   + +  +L H  +KL       G
Sbjct: 273 VIANPPFNVSDYNINKA--------ETHKWKYGIPPTGNANYAWLQHFVSKLAPY----G 320

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A IVL++  + +  A   E +IR+ ++E DL++ +VALP+ LF+ T I   LW L+  K
Sbjct: 321 TAGIVLANGSMSSEIAT--EGQIRKEMIEADLVDCMVALPSQLFYNTQIPACLWFLARNK 378

Query: 415 T-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
                   R  ++  I+A +L T I     K+R + D    ++   Y +  + +      
Sbjct: 379 EGNSKLRNRNHEILFIDARELGTMISR---KQRELTDTDIARVAATYHNWRSPEKFATDY 435

Query: 470 YRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               G+ +   +    + ++IL               K        + + +K +   +  
Sbjct: 436 KDIPGFCKSANIQDVRKNNYILTPGRYIDF-------KAVEDDGVAFEEKMKTLTSTLAE 488

Query: 529 YGWAESFVKESIKSNEAK 546
                + + + IK+N AK
Sbjct: 489 QMHKANELDKLIKTNLAK 506


>gi|313896491|ref|ZP_07830042.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974915|gb|EFR40379.1| putative type I restriction-modification system, M subunit
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 501

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/497 (20%), Positives = 193/497 (38%), Gaps = 45/497 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E   + + L +++W +A+ L G      + + I P    +RL    E   +   ++    
Sbjct: 2   ENKITLSELESYLWGSADILRGKMDAGSYKQYIFPLLFFKRLNDVYEEETAKAVKENGE- 60

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +  D     ++     ++      S +G         +   + S+    IF D  +++
Sbjct: 61  EAAEWDEIHSYRIPDGFHWDDVRNVPSDVG-KAIVTAFRAMEKANSEKLTGIFGDGTWTN 119

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL    LL  + ++FS   L  +  P+  +   YE+LI++F  +    A++F T R 
Sbjct: 120 K-NRLPDR-LLKDLMEHFSKYTLSLENCPEDELGQGYEYLIKQFADDSGHTAQEFYTNRT 177

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VVHL T +L           P    ++YDPTCG+ G L  A+ H+   G   +    +  
Sbjct: 178 VVHLMTEIL----------QPKSGESIYDPTCGSAGMLISAIAHLKRSGKEWR---NVSL 224

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSN 298
            GQE+   + A+    + +  +E          I  G TL+   F      ++F   ++N
Sbjct: 225 FGQEINLLSSAIGRMNLFLHGIEDFE-------IVNGDTLANPAFTKNGKLRQFDMIVAN 277

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+               +  + GR   G+P  +     F  H+   ++      GR AI
Sbjct: 278 PPYSVNQWS-----RAAFEFDKYGRNILGVPPQARADYAFFQHILVSMKDKT---GRCAI 329

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +     LF       E  +R  L+ +D ++ ++ L  +LF+ + +   + I    K +  
Sbjct: 330 LFPHGVLFRNE----ERAMREKLVHSDWVDCVIGLGANLFYNSPMEACIVICRTEKPDTH 385

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRR 477
           +  V  INA +  T        R  +      +I   Y + +    F++ +  R      
Sbjct: 386 KNHVLFINALNEVTR----KNARSYLESQHIERISKAYNTYKSEEGFAKKVSIRDIEKND 441

Query: 478 IKVLRPLRMSFILDKTG 494
             +  PL +   +++T 
Sbjct: 442 FSLNIPLYVQVTMEETK 458


>gi|302878446|ref|YP_003847010.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302581235|gb|ADL55246.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 516

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 111/542 (20%), Positives = 215/542 (39%), Gaps = 69/542 (12%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           K A+ L G+ + +D+  V L    L+ +  A E    A+ E+           +    +A
Sbjct: 21  KAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHKALLEE-----DPQAAEDKDEYLA 75

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIARLEK 129
              F+   +   S L +      + + I          +++ K +         + ++  
Sbjct: 76  DNVFWVPKDARWSHLQANAKLPTIGTLIDDAMRAIEKDNESLKGVLPKDYARPALNKV-- 133

Query: 130 AGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
             +L ++    SGI L+ +      ++  +YE+ + +F     +   +F TPR VV +  
Sbjct: 134 --MLGELIDLISGIALNEEGHASRDILGRVYEYFLGQFAGAEGKRGGEFYTPRSVVRVLV 191

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L                 +YDP CG+GG    +   V + G        +  +GQE  
Sbjct: 192 EML-----------EPYQGRIYDPCCGSGGMFVQSEKFVQEHGGRIG---DIAIYGQESN 237

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306
             T  +    + +R ++SD        I+  +  +  KD     +  Y L+NPPF     
Sbjct: 238 YVTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRDLKADYILANPPFNISDW 289

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                     +  E  R+  G P + + +  +L H+ + L       G A +VL++  + 
Sbjct: 290 GGD-------RLREDVRWKFGAPPVGNANYAWLQHIVHHLAP----NGTAGVVLANGSM- 337

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGK 421
                SGE +IRR ++E D+++ +VALP  LF+ T I   LW L+  K       +RRG+
Sbjct: 338 -SSTQSGEGDIRREMVEKDILDCMVALPGQLFYSTQIPACLWFLARNKNPGNGWRDRRGE 396

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
           V  I+A  L   +      RR ++D   ++I D Y +      +   +  + G+ +   L
Sbjct: 397 VLFIDARKLGVLVDRT---RRELSDADVQKIADTYHAWRGEPNAGAYEDIS-GFCKSASL 452

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
             +R    +   G     A+      +   +    + L  +  Q+  +    + ++++IK
Sbjct: 453 DDIRKQGHVVAPGRYVGAAE------TDDDEEPTSEKLSRLSSQLRTHFSENAQLEQAIK 506

Query: 542 SN 543
           + 
Sbjct: 507 NA 508


>gi|21232333|ref|NP_638250.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767534|ref|YP_242296.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990647|ref|YP_001902657.1| type I site-specific DNA-methyltransferase catalytic subunit
           [Xanthomonas campestris pv. campestris str. B100]
 gi|21114104|gb|AAM42174.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572866|gb|AAY48276.1| type I restriction enzyme M protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732407|emb|CAP50601.1| type I site-specific DNA-methyltransferase catalytic subunit
           [Xanthomonas campestris pv. campestris]
          Length = 502

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 183/484 (37%), Gaps = 51/484 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  ++   +W   +   G    + +   +L    L+ +    +      + K+ 
Sbjct: 1   MNKTDIAQDTINAAVWTACDTFRGTVDPSVYKDYVLTMLFLKYVSDVWQDHYDDYKTKHG 60

Query: 61  A---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    +  E FV     +FY   +              L +   +     + +F+D
Sbjct: 61  NKPGLIEELLKNERFVLPHRANFYTLYDQRHRPGNGERIDTALHAIEDANLGKLRDVFQD 120

Query: 118 --FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSE 172
             F+ +      +K  LL  + ++F+   L+          ++ N YE+LI+ F S   +
Sbjct: 121 ISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNFASSSGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L   L+           P     + DPTCG+G  L      + +   
Sbjct: 181 KAGEFYTPPEVSALMARLM----------DPQQGDEICDPTCGSGSLLLKCGRLIRERTG 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
             K       +GQE    T A+    M +   +       +  I+ G T+          
Sbjct: 231 SGK----YALYGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPKLLAGNH 279

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            K F   ++NPPF       +             RF  GLP  + G   F++H+   ++ 
Sbjct: 280 LKHFDIVVANPPFSL-----EKWGHDSADTDPHDRFRRGLPPRTKGDYAFILHMIATMKP 334

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR A+V+    LF G A   E  IR+ L+E +L++ ++ LP  LF+ T I   + 
Sbjct: 335 RT---GRMAVVVPHGVLFRGAA---EGRIRQKLIEENLLDVVIGLPEKLFYGTGIPAAVL 388

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           +   +K ++   KV  I+A+  +      GK + ++ +   ++ILD   +R+N      L
Sbjct: 389 VFRTKKKDK---KVLFIDASRQYQD----GKNQNLLRESDLQRILDTVQARQNVDKYAYL 441

Query: 469 DYRT 472
               
Sbjct: 442 ASPD 445


>gi|154252793|ref|YP_001413617.1| type I restriction-modification system, M subunit [Parvibaculum
           lavamentivorans DS-1]
 gi|154156743|gb|ABS63960.1| type I restriction-modification system, M subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 505

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 186/489 (38%), Gaps = 58/489 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   +    W   +   G      +   IL    L+ +           R+++ 
Sbjct: 1   MT-DQLTQQQVNQTAWAACDTFRGVVDAGQYKDYILVMLFLKYISDLWNDHVEVYRKQFG 59

Query: 61  AF---GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    ++ E F+   G SFY+                 LE    +     + +F +
Sbjct: 60  EDEARIRRRLERERFILPEGTSFYDLHAQRTEANIGELINIALEKIEDANRAKLEGVFRN 119

Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            DF+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  +
Sbjct: 120 IDFNSEANLGRVKDRNRRLKNMLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGK 179

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP  +  L   L           +P    T+ DP CG+G  L  A   V     
Sbjct: 180 KAGEFYTPSAISRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEEVGSEN- 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----T 288
                     +GQE+   T A+    M +           +  I+   TL+         
Sbjct: 229 -------FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDH 274

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F   ++NPPF       ++A   + K     RF  G+P  S G   F+ H+    + 
Sbjct: 275 LMKFDVVVANPPFSLDKWGAENADTDQFK-----RFWRGIPPKSKGDYGFITHMIEIAKR 329

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + 
Sbjct: 330 QS---GRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAIL 383

Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-K 463
           +    + +    E R  V  I+A+  +T     GK + ++++    ++L+ Y SR    K
Sbjct: 384 VFDRSREQGGANEDRRDVLFIDASKEFTP----GKTQNVMDEAHIARVLEAYASRAETPK 439

Query: 464 FSRMLDYRT 472
           +S       
Sbjct: 440 YSHRASPEE 448


>gi|25028883|ref|NP_738937.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|23494170|dbj|BAC19137.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
          Length = 536

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 103/564 (18%), Positives = 195/564 (34%), Gaps = 70/564 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A    R+ + ++ +A G +
Sbjct: 12  STMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMT 71

Query: 66  NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDF 118
           +      +           F+         L         N  +   +  +      +  
Sbjct: 72  DDQTAMLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAI 131

Query: 119 -----DFSSTIARL-----EKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRF 166
                  S+T+ R+          L ++   F+              ++  +YE+ + +F
Sbjct: 132 MVANPALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARDLLGEVYEYFLEKF 191

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                +   +F TP                 L +        +YDP CG+GG        
Sbjct: 192 ARAEGKRGGEFYTP-----------AGVVRVLVEVLEPTSGRVYDPCCGSGGMFVQTEKF 240

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +            +  +GQEL   T  +    + I  L ++         + G T ++DL
Sbjct: 241 LDAHNKDRTA---IAVYGQELNERTWRMAKMNLAIHGLNANLGP------RWGDTFARDL 291

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +  Y ++NPPF          ++   +N E  R+  G+P  ++ +  ++ H+ +KL
Sbjct: 292 HPEMQADYIMANPPFN---------IKDWARNEEDPRWRYGVPPKNNANYAWIQHIISKL 342

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               + G   A   + S   N     GE +IR  L+E DL+  +VALPT LF  T I   
Sbjct: 343 APGGSAGVVMA---NGSMSSNSG---GEGKIRAELVEADLVSCMVALPTQLFRSTGIPVC 396

Query: 407 LWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +W  +  KT       +R G+V  I+A +L   I       R ++D+   +I D + +  
Sbjct: 397 VWFFAKDKTVGDQGAIDRTGQVLFIDARNLGHMIDRAE---RALSDEDIAKIADTFHTWR 453

Query: 461 NGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               ++     D   F Y    +       + L                           
Sbjct: 454 GTPSAKGRTYEDEAGFCYSA-TLEEIKDADYALTPGRYVGAAE---IEDDGEPIDEKIER 509

Query: 518 ILKPMMQQIYPYGWAESFVKESIK 541
           + K ++ Q        + V+E ++
Sbjct: 510 LKKELLDQFDESERLAAVVREQLR 533


>gi|257064463|ref|YP_003144135.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792116|gb|ACV22786.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 503

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 196/509 (38%), Gaps = 62/509 (12%)

Query: 3   EFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +   + A +     IW  A+ L G+   +++  V+L    L+ +    E     + ++  
Sbjct: 4   KKADNTAEIGFEQQIWSAADKLRGNMDASEYKNVVLGLIFLKYISDKFEQRYQELVDE-- 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKA 113
              G   + +         F+   E     +            +++    I + +D  K 
Sbjct: 62  ---GEGFEEDRDEYTYKNIFFVPPEARWGVIAGAAHTPEIGKAIDNAMRLIEAENDKLKN 118

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I    +F+     L+K   L ++   F+ +++        ++   YE+ + +F     + 
Sbjct: 119 ILPK-NFARQ--ELDKR-RLGEVVDLFTNVQMAEKGDTRDILGRTYEYCLSKFAEAEGKN 174

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  VV     ++                 +YDP CG+GG    +   V +    
Sbjct: 175 AGEFYTPACVVRTLVEII-----------EPYRGRVYDPCCGSGGMFVQSAQFVKNHQGR 223

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE  P T  + +  + IR +++D     +       T   D+   +RF 
Sbjct: 224 I---DDLSVYGQESNPTTWKMAMMNLAIRGIDADLGTFNA------DTFFNDIHKNERFD 274

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +       +  E  R+  G P   + +  ++ H+ + L       
Sbjct: 275 FVLANPPFNMSDWGGE-------QLKEDPRWDFGTPPAGNANFAWMQHMIHHLADD---- 323

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +VL++  L      + E  IR+ +++  L+E IVA+P  LF+ T I   LWI+S  
Sbjct: 324 GRMGMVLANGSL--SSQTNNEGAIRQKIVDAGLVEGIVAMPDRLFYSTGIPVSLWIIS-- 379

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K   R+ +   ++A ++ T +     + R   D+   ++ + + +   G+          
Sbjct: 380 KESNRQRRTLFVDAREMGTMVSR---RLREFTDEDIAKVAETFDAFRKGEL-----EDEK 431

Query: 474 GYR-RIKVLRPLRMSFILDKTGLARLEAD 501
           G+   + +    +  +IL       ++ +
Sbjct: 432 GFCAAVDIEDIAKQDYILTPGRYVGIKDE 460


>gi|259501399|ref|ZP_05744301.1| type I restriction-modification system [Lactobacillus iners DSM
           13335]
 gi|259167148|gb|EEW51643.1| type I restriction-modification system [Lactobacillus iners DSM
           13335]
          Length = 502

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/540 (18%), Positives = 203/540 (37%), Gaps = 60/540 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++  +   + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLDK----QVLGDVVDIFTNRIDMSDNKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D     +       T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I++LP  LF+  +I   LW +S 
Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K  +++GK   I+A  +   +     K R   ++  +++ D + + +NG          
Sbjct: 380 NK--KQKGKTVFIDARKMGHMVDR---KHRDFTEEDIQKLADTFEAFQNG-----TLEDE 429

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+  +  +    +  ++L       +E      +      +     L  M ++ +    
Sbjct: 430 KGFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTKLTSELSDMFERSHELED 489


>gi|238855603|ref|ZP_04645904.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|238831747|gb|EEQ24083.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
          Length = 479

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 199/513 (38%), Gaps = 61/513 (11%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
               +  L   + +W   ++L G    +++  V+L    L+ +  + E  R  + +    
Sbjct: 1   MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK---- 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
                   +S   +A   F+ + E   + +        +   I          +++ + I
Sbjct: 57  SDYPEDAEDSDAYLADNIFWVSPEARWNNIQKAAKTPQIGEVIDHAMESIEKDNESLRGI 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                 +     L+++  L  +    S I +   +     ++  +YE+ +++F S   + 
Sbjct: 117 LSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKN 172

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV     ++                T+YDP CG+GG    +   V +    
Sbjct: 173 GGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQ 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE  P T  +    + IR ++++     +       T + DL  G  F 
Sbjct: 222 I---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------DTFTNDLHKGTHFD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF  K    +       K  +  R+  G+P   + +  ++ H+ +KL       
Sbjct: 273 YILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKLNPD---- 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A  VL++  L        E  IR+ LLE D I+AIVALP  +F+ T I   LW +   
Sbjct: 322 GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDMN 379

Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           K      +RRG+   I+A +L   +       R  +++  ++I D Y +       +  D
Sbjct: 380 KNSEDERDRRGETLFIDARELGEMVDRT---HREFSNEDIKKIADTYHAYRGTNKQKYED 436

Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD 501
               G+ +I K+    +  ++L       L   
Sbjct: 437 VA--GFCKIAKLDEIAKNDYVLTPGRYVGLAEQ 467


>gi|229542810|ref|ZP_04431870.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229327230|gb|EEN92905.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 509

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 103/549 (18%), Positives = 200/549 (36%), Gaps = 68/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +   + + +W+ A+   G    + +   IL    ++ L    +       ++Y 
Sbjct: 1   MVEQT-TQEKINSVLWQAADTFRGKIDSSTYKDYILTMLFIKYLSDTYKEKLEEYTKRYN 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--------K 112
                  +      ++   F      +   L S      +   I    +          +
Sbjct: 60  -----GDEQRIQRALSRERFVLDETSTFDYLYSKRNDPEIGEIINKALERIENENAGKLR 114

Query: 113 AIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGS 168
            +F + DF+S        E+  +L  + ++F+ + L P  + +  +  N Y+++I  F S
Sbjct: 115 GVFRNIDFNSEAILGKAKERNAMLRSLLEDFNQLSLRPSQLGNEDIVGNAYQYMIGLFAS 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  +   +F TP +V  L   L+           P     +YDPTCG+G  L      V 
Sbjct: 175 DAGKKGGEFYTPAEVSELLARLV----------KPQENDRIYDPTCGSGSLLIKVAKQV- 223

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
                      +  +GQE    TH++ +  M +  ++          I+ G TL+  L  
Sbjct: 224 -------PSKKVAIYGQERNGATHSLALMNMYLHGID-------DAKIEWGDTLANPLHL 269

Query: 288 ---TGKRFHYCLSNPPFGKKWEKD--------KDAVEKEHKNGELGRFGPGLPKISDGSM 336
                 +F   ++NPPF                   + E       RF  G+P  S G  
Sbjct: 270 EDGKLMKFQVIVANPPFSLDKWAMGFAGEGNTDKKFKMEASLDPYRRFEWGVPPSSKGDY 329

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ H+   L       GR A +L    LF G     E++IR+ ++E +L++A++ LP  
Sbjct: 330 AFVQHMLYSLAE----NGRMATILPHGVLFRGA---SEAKIRKQIIELNLLDAVIGLPEG 382

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T I   + +    +T +    V  I+A+      +  GK +  + +    +I++ Y
Sbjct: 383 LFYGTGIPACIMVFRKDRTRK---DVLFIDASGEEHYEK--GKNQNKLREQDIEKIVETY 437

Query: 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             RE   K+S +            +  P  +    ++  +           +    +   
Sbjct: 438 EKRETIDKYSYVATIDEIRENDYNLNIPRYVDTFEEEEPVDMEAVKENIANIKKELKEVE 497

Query: 516 LDILKPMMQ 524
             + K + +
Sbjct: 498 AQMEKYLKE 506


>gi|91205221|ref|YP_537576.1| Type I restriction-modification system, M subunit [Rickettsia
           bellii RML369-C]
 gi|91068765|gb|ABE04487.1| Type I restriction-modification system, M subunit [Rickettsia
           bellii RML369-C]
          Length = 504

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/528 (21%), Positives = 198/528 (37%), Gaps = 59/528 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT        + N  W   +         ++   IL     + +    +  +    E+  
Sbjct: 1   MT-DQLKQNQINNAAWAACDTFRRVVDAANYKDYILVMLFFKYISDVWKAHKKECEERDK 59

Query: 61  AF---GGSNIDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAIFE 116
                  S ++ E FV   G +FY+                  L           K +F 
Sbjct: 60  DEPSRIQSQLEREDFVIPKGANFYDIFVQREKSDSIGELINKALNEIEQKNLAKLKGVFR 119

Query: 117 DFDFSSTIA---RLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + DF+S        E+   L  + ++F    ++L PD V + ++   Y +LI RF S+  
Sbjct: 120 NVDFNSEFNLGKTKERNRRLKMLLEDFGKLELDLSPDRVNEDIIGECYIYLISRFASDAG 179

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP  V  L   L           +P     + DP CG+G  L  A   V D  
Sbjct: 180 KKAGEFYTPTAVSTLLAKL----------AAPKSGDIICDPACGSGSLLLRAAKEVGDNN 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----F 287
                      +GQE+   T A+    M +         +   +I  G TL+        
Sbjct: 230 --------YALYGQEMNNATWALAQMNMFLH-------SEGGAHIYWGDTLNHPEILEND 274

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +F   ++NPPF  +    ++A    HK     RF  G+P  + G   F+ H+    +
Sbjct: 275 KLMKFDIVIANPPFSLEKWGHENAANDNHK-----RFWRGIPPKTKGDYAFISHMIEVTK 329

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRAAIV+    LF G     E  IR+ L+E++L++A++ LP +LF  T I   +
Sbjct: 330 PLS---GRAAIVVPHGVLFRGGT---EGLIRQSLIEDNLLDAVIGLPANLFTSTGIPVAI 383

Query: 408 WILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +    +       +R  V  I+A+  +      GK +  + ++   +I+D Y +R+  +
Sbjct: 384 LVFDRSRETGGQNNQRKDVLFIDASSSF----KAGKGQNFLEEEHINKIVDTYKNRKAIE 439

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            +S + +       +  +  P  +    ++  +   E     ++L   
Sbjct: 440 KYSHLANIHEIRENKHNLNIPRYVDTYEEEEEIDVAELQKEIQQLEKE 487


>gi|84387345|ref|ZP_00990365.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01]
 gi|84377794|gb|EAP94657.1| Type I restriction enzyme M protein [Vibrio splendidus 12B01]
          Length = 505

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/485 (21%), Positives = 186/485 (38%), Gaps = 51/485 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   +   +W   +   G    + +   IL    L+ +    +     + ++Y 
Sbjct: 1   MPHTPINQDDINKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKVDELAKEYG 60

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  + ++ +SF    G +F++  E        +     L +   +     K +F+D
Sbjct: 61  DEPELIAAMMETQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLKNVFQD 120

Query: 118 FDFS--STIARLEKAGLLYKICKNFSG--IELHPDTV-PDRVMSNIYEHLIRRFGSEVSE 172
             F+        +K  +L  + ++F    + L P  V    V+ N YE+LI+ F +   +
Sbjct: 121 ISFNTDKLGDEKQKNDILRHLLEDFGKETLNLRPSRVGTLDVIGNAYEYLIKHFAAGSGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L + +L           P    T+ DP CG+G  L      V +  +
Sbjct: 181 SAGEFYTPPEVSDLLSIIL----------EPQQGDTICDPACGSGSLLMKCGKQVQNNFA 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
             K        GQE    T ++    M +   +       +  I+ G T+       K  
Sbjct: 231 GSK---QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDKDG 280

Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F    +NPPF       +DA          GRF  G+P  + G   F+ H+   L+
Sbjct: 281 GLLHFDVVTANPPFSLDKWGFEDAGNDHF-----GRFRRGIPPKTKGDYAFISHMIETLK 335

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR  +V+    LF     S E +IR+ L++ +L++ ++ LP  LFF T I   +
Sbjct: 336 PQT---GRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAI 389

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +   +K +    KV  I+A+  +      GK +  +  D  ++I+D Y +RE       
Sbjct: 390 LLFKKQKDD---NKVLFIDASREF----KSGKNQNQLTPDNIQKIVDTYKARETTDKYSY 442

Query: 468 LDYRT 472
           L    
Sbjct: 443 LASLE 447


>gi|38234849|ref|NP_940616.1| putative type I restriction/modification system DNA methylase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38201113|emb|CAE50837.1| Putative type I restriction/modification system DNA methylase
           [Corynebacterium diphtheriae]
          Length = 535

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 203/562 (36%), Gaps = 70/562 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++  + + +WK+A+ L G    + +  V L    L+ +  + E  +  +R +     G 
Sbjct: 13  STSKEIKDTLWKSADKLRGSMDASQYKDVALGLVFLKYVSDSFEERQKEIRAELE---GK 69

Query: 66  NIDLESFVK--------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
             D E  ++         +   F+  S      L   +   +LE    S         + 
Sbjct: 70  GFDEEYILEDLADVDAYTSENVFWVASNARWDFLKKYSKGMDLEGKHKSIGKLIDEAMQQ 129

Query: 118 F--DFSSTIARL--------EKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRR 165
              D  S +  L             L ++   FS        D     ++  +YE+ + +
Sbjct: 130 LMADNESLLGTLPQIYGKDNIDQRRLGELVDLFSSTYFASTKDKKARDLLGEVYEYFLDK 189

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TP+ VV     +L                 +YDP CG+GG    A  
Sbjct: 190 FAKAEGKRGGEFYTPQPVVRTLVEIL-----------EPTEGRVYDPCCGSGGMFVQAEK 238

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +       +    +  +GQEL   T  +    + I  + S    +     + G T ++D
Sbjct: 239 FLE---VTKRDRSNIAVYGQELNERTWRMAKMNLAIHAISSSGLGE-----RWGDTFARD 290

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +  G +  Y ++NPPF          ++   +N E  R+  G+P   + +  ++ H+ +K
Sbjct: 291 IHAGTKMDYIMANPPFN---------IKDWIRNEEDARWKYGVPPAKNANFAWIQHIISK 341

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+     G   A   + +        SGE EIR+ ++E+D++  ++ALP  LF  T I  
Sbjct: 342 LKDHGEAGVVMA---NGTM---TSQSSGEGEIRKNMVEDDVVSCVIALPAQLFRGTGIPV 395

Query: 406 YLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            +W  +  K+       +RRG+V LI+A  L   I       R  +D+   +I + + + 
Sbjct: 396 CVWFFAKDKSAGVGGSVDRRGEVLLIDARQLGHMIDRTE---RAFSDEDITKIANAFRTW 452

Query: 460 ENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
              K +        G+ +   +       + L       +       +           +
Sbjct: 453 RGRKSAEGEYEDEAGFCKSATIEEIREAGYALTPGRYVGMPEA---EEDDEPIDEKIARL 509

Query: 519 LKPMMQQIYPYGWAESFVKESI 540
              +   +      ++ V+E +
Sbjct: 510 TAELTAALDESARLDAVVREQL 531


>gi|227544655|ref|ZP_03974704.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri CF48-3A]
 gi|300909428|ref|ZP_07126889.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri SD2112]
 gi|227185380|gb|EEI65451.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri CF48-3A]
 gi|300893293|gb|EFK86652.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus reuteri SD2112]
          Length = 512

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 216/557 (38%), Gaps = 63/557 (11%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M   T S   S+ + +WK A+ L G    +++  V+L    L+ +  + E   + + +  
Sbjct: 1   MKMATKSKELSIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLK-- 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112
                     +  + ++   F+   E     +  +     +   I S        +D+ +
Sbjct: 59  --SDYPEDAEDPDMYLSENIFWVPKEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLR 116

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVS 171
            +      S  + +      L ++    S I L         ++  +YE+ +  F S+  
Sbjct: 117 GVLSKNYASPDLDK----ARLGEVVDLISDISLGDKHAKQSDILGRVYEYFLNEFASQEG 172

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR +V     ++                 +YDP CG+GG    +   V +  
Sbjct: 173 KKGGEFYTPRSIVRTLVEMI-----------EPYKGRIYDPCCGSGGMFVQSDKFVQEHQ 221

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   L  +G+E  P T  +    + IR ++++          QG T + DL  G+R
Sbjct: 222 GKIG---DLSVYGEESNPTTWKLAKMNLAIRGIDNNLGPH------QGDTFTNDLHKGER 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + L+NPPF  K            K  E  R+  G+P + + +  ++ H+ +KL     
Sbjct: 273 FDFILANPPFNVKNWNGD-------KLREDARWQYGVPPVGNANYAWIEHIISKLAPD-- 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A  VL++  L      + E +IR+ +LE+D I+AIVALP  +F+ T I   LW + 
Sbjct: 324 --GKAGFVLANGALSTS--TTAEHDIRKAILEDDKIDAIVALPDKMFYSTGIPVSLWFVD 379

Query: 412 NRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
             K      +R+G+   I+A DL   I       R  + +  +++ D Y +         
Sbjct: 380 MNKESENERDRKGETLFIDARDLGEMIDRT---HRAFSKEDIKKVADTYHAYRGTNDQEY 436

Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            D    G+ ++ K+    +  ++L       L            ++     +   + +Q 
Sbjct: 437 KDVP--GFCKVAKLDEIAKNDYVLTPGRYVGLAKQ---EDDGEPYEVKMARLTGELKKQF 491

Query: 527 YPYGWAESFVKESIKSN 543
                 ++ +K+ +K  
Sbjct: 492 EESNKLQAEIKDVLKEL 508


>gi|320326658|gb|EFW82706.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 574

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 92/498 (18%), Positives = 183/498 (36%), Gaps = 67/498 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +  + +   L   +W  A+ L  +    ++  ++L    L+ +  +    R+ ++ ++  
Sbjct: 48  SSTSSTLQDLEKTLWATADKLRANMDAAEYKHIVLGLIFLKYISDSFAGRRAELKRRFAD 107

Query: 62  FGGS------------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------S 102
                               E         F+         L +   + ++        +
Sbjct: 108 ASDDYYLGNDDSNLLAGELEERDYYKEVNVFWVPEAARWEALRAAAKQADIGKRIDEALA 167

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEH 161
            I + +   K I +     + +      G L ++    S I    +      ++  +YE+
Sbjct: 168 AIEAENQQLKNILDKRYARAQLPD----GKLGELVDMISIIGFGDNAHQARDLLGQVYEY 223

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F S   +    F TP  +V    A+L                 +YDP CG+GG   
Sbjct: 224 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPHQG-----------KVYDPCCGSGGMFV 272

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +   +   G        +  +GQE  P T  +    + IR ++ +  ++ +       +
Sbjct: 273 QSEKFIEAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA------DS 323

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
             ++  +  R  + L+NPPF                  +  R+  G P   + +  +L H
Sbjct: 324 FVRNQHSDLRADFVLANPPFNVS-------DWWHGSLEDDPRWVYGTPPPGNANYAWLQH 376

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L+      GRA IV+++  + +    + E +IRR ++E D++E +VALP  LFF T
Sbjct: 377 MLFHLKST----GRAGIVMANGSMSSS--QNSEGDIRRAMIEADVVEVMVALPGQLFFNT 430

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
            I   LW L+ +K +   G+V  I+A  L    RN  + +  + D    +I     +   
Sbjct: 431 QIPACLWFLAKQKNKRP-GEVLFIDARKLG---RNVSRVQIELRDSDIERIAQTVANWRG 486

Query: 461 -----NGKFSRMLDYRTF 473
                 G+ S   D   F
Sbjct: 487 VPLDVGGEISEYADIPGF 504


>gi|251811429|ref|ZP_04825902.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805058|gb|EES57715.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 504

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 107/539 (19%), Positives = 199/539 (36%), Gaps = 62/539 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G     ++  V L    L+ +  + E     +  K  ++       E   
Sbjct: 9   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDSYADEEDQDEYL- 65

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIAR 126
             A   F+   E     +     +  +          I + +++ K +         + +
Sbjct: 66  --AENIFWVPKEARWQYINDNAKKPEIGQMIDKAMIAIENENESLKGVLPKEYARPALDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L
Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V     H      +  +GQE
Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF     
Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +  ++         R+  G+P   + +  ++ H+ +KL       G A  VL++  + 
Sbjct: 280 GQEQLLD-------DYRWQFGIPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422
                  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ERR ++
Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERRNEI 386

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481
             I+A ++   +    K     +D+  +++   Y +          D    G+ ++ K+ 
Sbjct: 387 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHAWRGTNDKSYEDIA--GFCKVAKLE 441

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 +IL       L       +     +     I   + +Q       E  +++S+
Sbjct: 442 EVKNNEYILTPGRYVGLAD---VEEDKEPFEQKMERITSELSEQFAKSKELEDQIRKSL 497


>gi|302331823|gb|ADL22016.1| type I site-specific deoxyribonuclease methyltransferase subunit,
           HsdM [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 504

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 108/539 (20%), Positives = 199/539 (36%), Gaps = 62/539 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G     ++  V L    L+ +  + E     +      +       E   
Sbjct: 9   KLWQAADKLRGSMDAAEYKNVALGIIFLKYVSDSFEEKYEELL--NDEYADEEDKDEYL- 65

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126
             A   F+   E     +   + +  +   I          +++ K +         + +
Sbjct: 66  --AENIFWVPKESRWQYINDNSKKPEIGQIIDKAMIAIERENESLKGVLPKDYARPALDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L
Sbjct: 124 ----EKLGDIIDLFTFKVGDSESKKQDVLGRVYEYFIAKFASAEGKNAGEFYTPASIVKL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V            +  +GQE
Sbjct: 180 LVEMV-----------EPYEGRIYDPCCGSGGMFVQSERFVERH---QGRLDNIAVYGQE 225

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +++D             T   DL    +  + L+NPPF     
Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGDH------HADTFHNDLHKDLKADFILANPPFNASDW 279

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                     K  +  R+  G+P   + +  ++ H+ +KL       G A  VL++  + 
Sbjct: 280 G-------REKLLDDYRWKFGIPPKGNANYAWIEHMISKLAPS----GTAGFVLANGSMS 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
                  E EIR+ L+E DL+E IV LP  LF+ T I   LW ++  K +    ERRG+V
Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFVTKNKAKNGKNERRGEV 386

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481
             I+A ++ + +    K    ++DD+ + I ++Y S      ++  D    G+ ++ K  
Sbjct: 387 LFIDARNIGSMVSRTLK---EVSDDEIKDIANVYHSWRGTNNNQYEDKA--GFCKVAKTE 441

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 +IL       L       + S   +     I   + +Q       E  +++S+
Sbjct: 442 EIKNNEYILTPGRYVGLAE---VEEDSEPFEQKMERITADLSEQFAKSKELEDQIRKSL 497


>gi|302345836|ref|YP_003814189.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
 gi|302149936|gb|ADK96198.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
          Length = 501

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 102/539 (18%), Positives = 192/539 (35%), Gaps = 60/539 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       IWK A+ L G+   +++  V+L    L+ +    E     +     
Sbjct: 1   MAKQNTADIGFEKEIWKAADLLRGNLDASEYKSVVLGLIFLKYISDKFETKYQELVN--- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +    +A   F+   E   S +             +N    I   +   K 
Sbjct: 58  --NGEGFEEDRDEYMADNIFFVPQEARWSVVAKAAHTPEIGTIIDNAMRLIEKENLRLKG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I++        ++   YE+ + +F     + 
Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIQMKEHGDSKDILGRTYEYCLSKFAEAEGKL 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L                 +YDP CG+GG    +   +     +
Sbjct: 172 AGEFYTPACIVQTLVEVL-----------KPYHGRVYDPACGSGGMFVQSAKFIERHQGN 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K    +  +GQ+  P T  +    + IR +E+D  +  +       T   D     +  
Sbjct: 221 IK---DISVYGQDSNPTTWKMAQMNLAIRGIEADLGKFNA------DTFFDDQHPTLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF               K  +  R+  G+P   + +  +L H+ + L       
Sbjct: 272 FIMANPPFNLSDWGAD-------KLQDDVRWKFGIPPSGNANFAWLQHMIHHLSPK---- 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L       GE  IR  +++ DLIE IVALP+ LF+ T I   LW L+  
Sbjct: 321 GKIGMVLANGSL--SSQTGGEGTIRENIIKADLIEGIVALPSQLFYTTGIPVSLWFLNRE 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  +++ K+  ++A ++ T +     K R + +   R+I D +      K+S        
Sbjct: 379 K--KQKDKILFVDARNMGTMVTR---KLRELQEADIRKIADTF-----DKYSDGTLENEK 428

Query: 474 GYRRIKVL-RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           G+  +  L    +  +IL       +                    L  +  Q +    
Sbjct: 429 GFCAVVALGDVAKQDYILTPGRYVGIAEQEDDGIPFQEKMDKLTTELSDLFAQSHDLED 487


>gi|160902533|ref|YP_001568114.1| type I restriction-modification system, M subunit [Petrotoga
           mobilis SJ95]
 gi|160360177|gb|ABX31791.1| type I restriction-modification system, M subunit [Petrotoga
           mobilis SJ95]
          Length = 815

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 114/603 (18%), Positives = 228/603 (37%), Gaps = 62/603 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   ++K A+ L G+   +++ + I     L+R     E ++  +R K+ 
Sbjct: 1   MNNGKITIRQLETHLFKAADILRGNMDASEYKEYIFGMLFLKRASDVFEVSKEKLRNKFK 60

Query: 61  AFGGSNIDLESFVKVAGY---SFYNTSEYSLSTL--GSTNTRNNLE---SYIASFSDNAK 112
           A   ++  +   ++       +F+   +     +     +  N+L    + +   +    
Sbjct: 61  AQSFTDEQINELLEDPDLYWDTFFVPEKARWRNILTLKEDVGNHLNKALAALEEANRELD 120

Query: 113 AIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEV 170
            + +  DF++       K+  L  +  +F+   L  +       +   YE+L++ F    
Sbjct: 121 GVLKYIDFNAIKGKTRLKSQQLIDLIHHFNKYRLTNEDFEFPDLLGAAYEYLLKEFADSA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+           P    T+YDPT G+GGFL ++ +++ + 
Sbjct: 181 GKKGGEFYTPTYVKKLMVRLV----------KPQEGMTIYDPTVGSGGFLIESRHYIEEQ 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G     P  +  +GQEL   T ++C   M++  +          +I+   TL+  +F   
Sbjct: 231 GQD---PINIALYGQELNGLTWSICKMNMILHGI-------SDAHIENEDTLTTPMFVEN 280

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLAN 344
              + F   L+NPPF + + +     ++        RF  G          ++FL H+  
Sbjct: 281 GYIRHFDRVLANPPFSQNYTRTNMQFQE--------RFKYGFTPETGKKADLMFLQHMIA 332

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L    N  G  A V+    LF G     E  IR  ++ ++LIEAI+ LP+ LF+   I 
Sbjct: 333 SL----NDNGVMATVMPHGVLFRGGQ---EKVIREGIVRDNLIEAIIGLPSKLFYNVGIP 385

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             + +++  K E  + K+  INA   +      G+ +  +  +   +I+ ++  +++  K
Sbjct: 386 ACVIVINKNKPEHMKDKILFINADREYGE----GRNQNYLRPEDIEKIVTVFDEKKDIPK 441

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKT------GLARLEADITWRKLSPLHQSFWLD 517
           +SR++D          +     +    D         L              L QSF L 
Sbjct: 442 YSRIVDIMEIEDNDFNLNIRRYLDNSPDPEIEDVHAHLVCGVPKREVELYKELFQSFDLS 501

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV 577
           + + + ++   Y      ++E  K  E          +            D     +   
Sbjct: 502 LNRLLKEKDKNYLEFNDNIEEKSKLREIIESDDNVRVTISKHREKLQEWWDKVTPEIERF 561

Query: 578 NGE 580
           +G 
Sbjct: 562 HGN 564


>gi|254190415|ref|ZP_04896923.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938091|gb|EDO93761.1| type I restriction-modification system methylation subunit
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 543

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 187/467 (40%), Gaps = 55/467 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L N++W  A  L G     D+ + I P    +R+    +    A          SN
Sbjct: 44  SQQELENYLWGAAVLLRGLIDAGDYKQFIFPLLFYKRVSDVWDEEYQAALA------NSN 97

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDNAKA-IFEDFDF 120
            DL        + F   +    + +  T  N    ++     I + + +    IF D  +
Sbjct: 98  GDLSYAQFAENHRFQIPAGAHWNDVRQTPKNVGAAIQKAMRAIETANPDLLDGIFGDAPW 157

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T 
Sbjct: 158 TNR-ERLPD-ETLKNLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTN 215

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++     
Sbjct: 216 RTVVHLMTQLL----------APQAGESIYDPTCGTGGMLISALDEVKRSGGEYRTLK-- 263

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE    T ++    + +  +E          I +G TL+          ++F   L
Sbjct: 264 -LYGQERNLITSSIARMNLFLHGVEDFE-------IIRGDTLADPKHIEGDRLRQFDVIL 315

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K    +          + GR   G P        F  H+   L       GR 
Sbjct: 316 ANPPYSIKQWNREGWSSD-----KWGRNSLGTPPQGRADYAFQQHILTSL----TAKGRC 366

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A++     LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + +KT 
Sbjct: 367 AVLWPHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCIVICNRKKTA 422

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            RRGKV  I+A       R     +  +  + ++ IL+ Y    +  
Sbjct: 423 ARRGKVIFIDAVSEVARERA----QSFLKPEHQQHILNAYKMFADAP 465


>gi|256833459|ref|YP_003162186.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603]
 gi|256686990|gb|ACV09883.1| N-6 DNA methylase [Jonesia denitrificans DSM 20603]
          Length = 521

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 192/544 (35%), Gaps = 80/544 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             +L   +W+ A+ L G+ + +++  V+L    L+ +    E  R+ +  +  A G    
Sbjct: 10  TKTLEQTLWEAADKLRGNQEPSEYKHVVLGLVFLKYISDRFEERRATLEAELAAEGIKPE 69

Query: 68  DLESFVKVAG-----YSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNAKAIF 115
            L  F++          F+         +            ++     I   +   + + 
Sbjct: 70  RLPDFLEDRDEYTSHNVFWVPELARWGYIQSVAKQPEIGQQIDQAMDLIEKENPTLRGVL 129

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFG-SEVSE 172
                   + +      L ++      I      D   D V+  +YE+ + +F   E  +
Sbjct: 130 PRNYGRDGLDK----RRLGELVDLIGSIGFTETDDHGADDVLGRVYEYFLGQFAGKETGK 185

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A  F TPR VV     +L                 +YDP  G+GG    +   V   G 
Sbjct: 186 DAGAFYTPRSVVKTLVEML-----------EPYQGRVYDPAAGSGGMFVQSAEFVKAHG- 233

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +GQE    T  +    + +R +E+D         +   + + DL    R 
Sbjct: 234 --GKRTDISVYGQEFTDTTWKLSKMNLALRGIEADMGP------RSADSFTDDLHPDLRA 285

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF             + K     R+  G P   + +  ++ H    L      
Sbjct: 286 DFVIANPPFNVS-------DWWDAKLEGDPRWQYGTPPQGNANFAWVQHFIYHLSPK--- 335

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  VL++  L       GE E+RR L+E DL++ IVA+P  LFF T I   LW +S 
Sbjct: 336 -GTAGFVLANGSL--SSKSGGEGEMRRKLVEADLVDCIVAMPDKLFFNTGIPVALWFVSK 392

Query: 413 ----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                   ERR +V  I+A  L T       + R++ DD   +I D Y +          
Sbjct: 393 ARHGNGHRERRSEVLFIDARKLGTMESR---RLRVLTDDDIAKIADTYHA---------W 440

Query: 469 DYRTFGYRRI-------KVLRPLRMSFILDKTGL-----ARLEADITWRKLSPLHQSFWL 516
                GY  +        +    +  ++L          A ++ +    K+  L +  + 
Sbjct: 441 RNHDGGYEDVPGFAKAASLEEIAKHDYVLTPGRYVGAAEAEVDDEPIDEKIERLTKELFA 500

Query: 517 DILK 520
           +  +
Sbjct: 501 EFER 504


>gi|17232089|ref|NP_488637.1| type I restriction-modification system DNA methylase [Nostoc sp.
           PCC 7120]
 gi|17133734|dbj|BAB76296.1| type I restriction-modification system DNA methylase [Nostoc sp.
           PCC 7120]
          Length = 527

 Score =  323 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 100/559 (17%), Positives = 197/559 (35%), Gaps = 61/559 (10%)

Query: 1   MTEFTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE      +  +F   +WK A+ L  +    ++  ++L    L+ +  A E     +  
Sbjct: 1   MTEKAAKQNNSESFEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFEELHQKLLA 60

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA------ 111
               + G+N   +     A   F+   E   S L     + ++   +    +        
Sbjct: 61  GEGDYAGAN-PEDRDEYSAENVFFVPVEARWSYLQGQAKQPDIGKTVDLAMEAIEQENAK 119

Query: 112 --KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
             K I         + +      L  +      I L         V+  +YE+ + +F  
Sbjct: 120 RLKGILPKVYGQQKLDQ----KSLGGLIDLIGSITLGDAEAQAQDVLGRVYEYFLGQFAL 175

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +    F TP  +V L   +L                 ++DP CG+GG    +   V 
Sbjct: 176 AEGKKGGQFYTPESIVKLLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFVK 224

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +          +  +GQE    T+ +C   + IR ++    +   +      +   D   
Sbjct: 225 NH---QGRLDDISIYGQESNETTYKLCRMNLAIRGIDGSNIKWNPEG-----SFLNDAHK 276

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +  + ++NPPF       +          +       +P + + +  ++ H    L  
Sbjct: 277 DLKADFVIANPPFNDSDWGGELLRNDGRWLDKD-----LVPPVGNANFAWVSHFIYHLAP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G A  VLS+  L      SGE +IR+ L++ DL++ IV LPT LF+ T I   LW
Sbjct: 332 T----GSAGFVLSNGSL--SSNTSGEGDIRKALVQKDLVDCIVMLPTQLFYNTGIPACLW 385

Query: 409 ILSN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            LS      K  +R G+V  I+A++L   +       R   + +  +I D Y   +    
Sbjct: 386 FLSRYKNGNKNRDRHGEVLFIDASELGYMVNRSS---RAFTEAEISKIADTYHEWKKSGG 442

Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           S        G+ +   +    + +F+L       +  ++   +     +    ++   + 
Sbjct: 443 SYR---DIKGFCKSASIAEIEKHNFVLTPGRYVGIPDEV---EDGVSFEEKMSELTMALG 496

Query: 524 QQIYPYGWAESFVKESIKS 542
           +Q+      +  +K+ +  
Sbjct: 497 EQMREGQLLDEEIKKQLLK 515


>gi|237756252|ref|ZP_04584812.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691589|gb|EEP60637.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 507

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 109/534 (20%), Positives = 215/534 (40%), Gaps = 52/534 (9%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           +L N++W+ A  + G  +   +   ILP   L+RL    +   S +  ++ +   +   +
Sbjct: 7   TLENWLWEAASAIRGAVEANKYKDYILPLIFLKRLSDVFDDEISRLESEFGSRERALKIV 66

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIA---SFSDNAKAIFEDFDFSSTI 124
           E     +   FY   +     + +        L   +      +   + +    DF++++
Sbjct: 67  EM--DHSIVRFYIPEKARWKNIKAQSVRIGEYLTDAVREVAKENPKLEGVINIVDFNASV 124

Query: 125 --ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              R+     L ++    S   L  + V   ++   YE+L+R+F     + A +F TP++
Sbjct: 125 SGQRIIDDDRLKELINILSRHRLGLNDVEPDILGRAYEYLLRKFAEGSGQSAGEFYTPKE 184

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L   +L           P     +YDP CG+GG L        +     K    L  
Sbjct: 185 VGILMAKIL----------DPKEGDEVYDPCCGSGGLLIKCYLRFKEKYQDKKDAIPLRF 234

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLS 297
            GQE+   T+A+      I  +E+         I  G ++    F       K+F    +
Sbjct: 235 FGQEINHTTYAMAKMNAFIHDMENTE-------IALGDSMRNPAFKESDGSLKKFDVITA 287

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NP + + + ++       +KN    RF  G+P  S     ++ H+   L       G+ A
Sbjct: 288 NPMWNQNFSEEV------YKNDPYKRFEFGIPPSSSADWGWIQHMYASLRE----NGKIA 337

Query: 358 IVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +VL +  +  G    G   E +IR+  ++NDLIEA++ LP +LF+ T     + +++  K
Sbjct: 338 VVLDTGSVSRGSGNVGSNKERDIRKKFVDNDLIEAVILLPENLFYNTTAPGVIIVINKNK 397

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
             E + ++ LINA+ L+   R     +  + D+  RQ+ +IY + E  +  S+++     
Sbjct: 398 --EHKDQILLINASSLYEKER----PKNRLTDEGIRQVYEIYKNWEEREGLSKIVSKEEV 451

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 +  P R   I  +  +  L   +     +   +    + L+ ++ ++ 
Sbjct: 452 ARNDYNL-SPSRYVAINGEEEILDLNEAMVELLEAEEERREAEEKLRAVLSELG 504


>gi|297562021|ref|YP_003680995.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296846469|gb|ADH68489.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 549

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 114/552 (20%), Positives = 205/552 (37%), Gaps = 70/552 (12%)

Query: 5   TGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           T + +  L + +WK A+ L G     ++   +L    L+ +  A    R  + ++    G
Sbjct: 11  TRTGSKDLKDTLWKAADKLRGSMDAAEYKHFVLGLIFLKYVSDAFAERRVHIEKELREEG 70

Query: 64  GSNIDL--ESFVKVAGY----SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           G +     E+      Y     F+         +         E  +    D+A     +
Sbjct: 71  GYSETDIAETLEDREEYIGYGVFWVPQAARWEAIAERAKTGAGEDGVGKLLDDAMKAVAN 130

Query: 118 FD--FSSTIA------RLEKAGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHL 162
            +    +++       R      L ++    + I       PD        V+  +YE+ 
Sbjct: 131 TNPSLRNSLPQGLFNARGVDERRLGELVDLINRIGFGDQLDPDGNRRSARDVLGEVYEYC 190

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F         ++ TP  VV L  A+L           P     +YDP CG+GG    
Sbjct: 191 LGKFALAEGRRGGEYYTPACVVELIVAML----------EPQKGERVYDPACGSGGMFVQ 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A   V   G + +    +  +GQEL   T  +    + I  + +D         +   T 
Sbjct: 241 AEKFVESHGGNAR---DIAVYGQELNQNTWRLAKMNLAIHGISADLGT------KWDDTF 291

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D     R H  ++NPPF               +     R+  G+P + + +  +L H+
Sbjct: 292 HNDHHPDLRAHVVMANPPFNISDWGGD-------RLVMDPRWQWGVPPVGNANYAWLQHM 344

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
           A KL       GRA IVL++  +      SGE +IRR ++E+ L+  +VALP  LF  T 
Sbjct: 345 AYKLAPKA---GRAGIVLANGSM--SSKQSGEGDIRRAMVEDGLVACMVALPGQLFRSTQ 399

Query: 403 IATYLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           I   +WIL+  +         +R G+V  I+A +L   +    K+   + +D+ +QI + 
Sbjct: 400 IPACVWILAKDRGAKGGRGSIDRTGQVLFIDARELGEMVTRTEKQ---LTEDEIKQISNT 456

Query: 456 YVSRENGKFSRM--LDYRTF-GYRR-IKVLRPLRMSFILDKTGL---ARLEADITWRKLS 508
           + +      ++   L Y    G+ + + +       FIL        A +E D     L 
Sbjct: 457 FHAWLGTSSAKRNGLTYEDIGGFCKSVSLDEIREHDFILTPGRYVGAAEVEEDPDAEPLD 516

Query: 509 PLHQSFWLDILK 520
                   ++ +
Sbjct: 517 EKVARLQKELFE 528


>gi|148976278|ref|ZP_01813002.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
 gi|145964372|gb|EDK29627.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
          Length = 515

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 112/552 (20%), Positives = 203/552 (36%), Gaps = 60/552 (10%)

Query: 1   MTEFTGSAASLAN-----FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M     +   L        +W   +   G    + +   IL    L+ +    +     +
Sbjct: 1   MPHTKINQDPLYQEQVNKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKFDEL 60

Query: 56  REKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            +++        + +  +SF    G +F++  E        +     L +   +     K
Sbjct: 61  SKQFNGNEQMITAMMSKQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLK 120

Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNF--SGIELHPDTV-PDRVMSNIYEHLIRRFG 167
            +F+D  F+        +K  +L  + ++F    + L P  V    V+ N YE+LI+ F 
Sbjct: 121 NVFQDISFNTDKLGDEKQKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFA 180

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   + A +F TP +V  L + +L           P    ++ DP CG+G  L      V
Sbjct: 181 AGSGKSAGEFYTPPEVSDLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQV 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
               +  K        GQE    T ++    M +   +       +  I+ G T+     
Sbjct: 231 QKNFAGSK---QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKL 280

Query: 288 TGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             K      F    +NPPF       +DA          GRF  G+P    G   F+ H+
Sbjct: 281 QDKEGGLLHFDVVTANPPFSLDKWGFEDAGNDHF-----GRFRRGIPPKIKGDYAFISHM 335

Query: 343 ANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              L+    G  GGR  +V+    LF     S E +IR+ L++ +L++ ++ LP  LFF 
Sbjct: 336 IETLKPASQGKKGGRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T I   + I   +K +    KV  I+A+  +      GK +  +  +  ++I+D Y +RE
Sbjct: 393 TGIPAAILIFKKQKDD---NKVLFIDASREF----KSGKNQNQLTPENIQKIVDTYKARE 445

Query: 461 NGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
               +S +            +  P  +    ++  +       T R      Q+   D+ 
Sbjct: 446 TTDKYSYLASLEEVAENDYNLNIPRYVDTFEEEEEIDLA----TVRNERLALQNKLADLE 501

Query: 520 KPMMQQIYPYGW 531
             M   +   G+
Sbjct: 502 GEMAGYLEELGY 513


>gi|260665337|ref|ZP_05866185.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
 gi|260560841|gb|EEX26817.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
          Length = 510

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 109/555 (19%), Positives = 211/555 (38%), Gaps = 64/555 (11%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
               +  L   + +W   ++L G    +++  V+L    L+ +  + E  R  + +    
Sbjct: 1   MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK---- 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
                   +S   +A   F+ + E   + +        +   I          +++ + I
Sbjct: 57  SDYPEDAEDSDAYLADNIFWVSPEARWNNIQKAAKTPQIGEVIDHAMESIEKDNESLRGI 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                 +     L+++  L  +    S I +   +     ++  +YE+ +++F S   + 
Sbjct: 117 LSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKN 172

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV     ++                T+YDP CG+GG    +   V +    
Sbjct: 173 GGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQ 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE  P T  +    + IR ++++     +       T + DL  G  F 
Sbjct: 222 I---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------DTFTNDLHKGTHFD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF  K    +       K  +  R+  G+P   + +  ++ H+ +KL       
Sbjct: 273 YILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKLNPD---- 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A  VL++  L        E  IR+ LLE D I+AIVALP  +F+ T I   LW +   
Sbjct: 322 GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDMN 379

Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           K      +RRG+   I+A +L   +       R  +++  ++I D Y +       +  D
Sbjct: 380 KNSEDERDRRGETLFIDARELGEMVDRT---HREFSNEDIKKIADTYHAYRGTNKQKYED 436

Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               G+ +I K+    +  ++L       L            ++     +   + +Q   
Sbjct: 437 VA--GFCKIAKLDEIAKNDYVLTPGRYVGLAEQ---EDDGEPYEVKMARLTGELKKQFEE 491

Query: 529 YGWAESFVKESIKSN 543
               +  +K+ +K  
Sbjct: 492 SDRLQDEIKDVLKEL 506


>gi|15609893|ref|NP_217272.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Rv]
 gi|148662598|ref|YP_001284121.1| putative type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|148823944|ref|YP_001288698.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis F11]
 gi|167968583|ref|ZP_02550860.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|218754497|ref|ZP_03533293.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|253798162|ref|YP_003031163.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 1435]
 gi|254551815|ref|ZP_05142262.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289553459|ref|ZP_06442669.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 605]
 gi|289762928|ref|ZP_06522306.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|297635365|ref|ZP_06953145.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 4207]
 gi|297732363|ref|ZP_06961481.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN R506]
 gi|306777037|ref|ZP_07415374.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu001]
 gi|306780940|ref|ZP_07419277.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu002]
 gi|306785567|ref|ZP_07423889.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu003]
 gi|306790162|ref|ZP_07428484.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu004]
 gi|306794246|ref|ZP_07432548.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu005]
 gi|306798664|ref|ZP_07436966.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu006]
 gi|306804519|ref|ZP_07441187.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu008]
 gi|306807440|ref|ZP_07444108.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu007]
 gi|306973152|ref|ZP_07485813.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu010]
 gi|307080861|ref|ZP_07490031.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu011]
 gi|307085452|ref|ZP_07494565.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu012]
 gi|313659695|ref|ZP_07816575.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN V2475]
 gi|2624278|emb|CAA15552.1| POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM DNA METHYLASE HSDM
           (M PROTEIN) (DNA METHYLTRANSFERASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148506750|gb|ABQ74559.1| putative type I restriction/modification system DNA methylase HsdM
           [Mycobacterium tuberculosis H37Ra]
 gi|148722471|gb|ABR07096.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis F11]
 gi|253319665|gb|ACT24268.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438091|gb|EFD20584.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 605]
 gi|289710434|gb|EFD74450.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis GM 1503]
 gi|308214548|gb|EFO73947.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu001]
 gi|308326196|gb|EFP15047.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu002]
 gi|308329750|gb|EFP18601.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu003]
 gi|308333357|gb|EFP22208.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu004]
 gi|308337381|gb|EFP26232.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu005]
 gi|308341044|gb|EFP29895.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu006]
 gi|308346170|gb|EFP35021.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu007]
 gi|308348850|gb|EFP37701.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu008]
 gi|308357414|gb|EFP46265.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu010]
 gi|308361366|gb|EFP50217.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu011]
 gi|308364976|gb|EFP53827.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis SUMu012]
 gi|328457935|gb|AEB03358.1| type I restriction/modification system DNA methylase hsdM
           [Mycobacterium tuberculosis KZN 4207]
          Length = 540

 Score =  323 bits (827), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 98/485 (20%), Positives = 179/485 (36%), Gaps = 66/485 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R A+R +  A G  
Sbjct: 13  STMKELKDTLWKAADKLRGSLSASQYKDVILGLVFLKYVSDAYDERREAIRAELAAEGME 72

Query: 66  NIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR---------NNLESYIASFSDNA 111
              +E  +           F          L                N+   I    D  
Sbjct: 73  ESQIEDLIDDPEQYQGYGVFVVPVSARWKFLAENTKGKPAVGGEPAKNIGQLIDEAMDAV 132

Query: 112 KAIFEDFDFSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIR 164
                +     T+ RL          L ++   F+        +     +M  +YE+ + 
Sbjct: 133 MK--ANPTLGGTLPRLYNKDNIDQRRLGELIDLFNSARFSRQGEHRARDLMGEVYEYFLG 190

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  VV +   +L                 +YDP CG+GG      
Sbjct: 191 NFARAEGKRGGEFFTPPSVVKVIVEVL-----------EPSSGRVYDPCCGSGGMFVQTE 239

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +       P  +  +GQE   ET  +    + I  +++          +   T ++
Sbjct: 240 KFIYEHDGD---PKDVSIYGQESIEETWRMAKMNLAIHGIDNKGLGA-----RWSDTFAR 291

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +  Y ++N PF          ++   +N E  R+  G+P  ++ +  ++ H+  
Sbjct: 292 DQHPDVQMDYVMANLPFN---------IKDWARNEEDPRWRFGVPPANNANYAWIQHILY 342

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      GGRA +V+++  +      +GE +IR  ++E DL+  +VALPT LF  T I 
Sbjct: 343 KLAP----GGRAGVVMANGSM--SSNSNGEGDIRAQIVEADLVSCMVALPTQLFRSTGIP 396

Query: 405 TYLWILSNRKTEERR------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             LW  +  K   ++      G+V  I+A +L   +       R + +++  +I D + +
Sbjct: 397 VCLWFFAKDKAAGKQGSIDRCGQVLFIDARELGDLVDRAE---RALTNEEIVRIGDTFHA 453

Query: 459 RENGK 463
               K
Sbjct: 454 WRGSK 458


>gi|256852236|ref|ZP_05557622.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661732|ref|ZP_05862643.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|297205598|ref|ZP_06922994.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus jensenii JV-V16]
 gi|256615282|gb|EEU20473.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260547479|gb|EEX23458.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|297150176|gb|EFH30473.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus jensenii JV-V16]
          Length = 510

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 110/555 (19%), Positives = 210/555 (37%), Gaps = 64/555 (11%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
               +  L   + +W   ++L G    +++  V+L    L+ +  + E  R  + +    
Sbjct: 1   MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK---- 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
                   +S   +A   F+ + E     +        +   I          +++ + I
Sbjct: 57  SDYPEDAEDSDAYLADNIFWVSPEARWDNIQKAAKTPEIGEVIDHAMESIEKDNESLRGI 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                 +     L+++  L  +    S I +   +     ++  +YE+ +++F S   + 
Sbjct: 117 LSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVYEYFLQKFASNEKKN 172

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV     ++                T+YDP CG+GG    +   V +    
Sbjct: 173 GGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGMFVQSEQFVQEHQGQ 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE  P T  +    + IR ++++     +       T + DL  G  F 
Sbjct: 222 I---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------DTFTNDLHKGTHFD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF  K    +       K  +  R+  G+P   + +  ++ H+ +KL       
Sbjct: 273 YILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGNANYAWIEHIISKLNPD---- 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A  VL++  L        E  IR+ LLE D I+AIVALP  +F+ T I   LW +   
Sbjct: 322 GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALPDKMFYSTGIPVSLWFIDMN 379

Query: 414 K----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           K      +RRG+   I+A +L   +       R  +D+  ++I D Y +       +  D
Sbjct: 380 KNSEDERDRRGETLFIDARELGEMVDRT---HREFSDEDIKKIADTYHAYRGTNEQKYED 436

Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               G+ +I K+    +  ++L       L            ++     +   + +Q   
Sbjct: 437 MA--GFCKIAKLDEIAKNDYVLTPGRYVGLVEQ---EDDGEPYEVKMARLTAELKKQFEE 491

Query: 529 YGWAESFVKESIKSN 543
               +  +K+ +K  
Sbjct: 492 SDRLQDEIKDVLKEL 506


>gi|257094282|ref|YP_003167923.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257046806|gb|ACV35994.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 539

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 99/484 (20%), Positives = 182/484 (37%), Gaps = 64/484 (13%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---- 57
              S+A+L     +W  A+ L  +    ++  V+L    L+ +    +   + +      
Sbjct: 8   KNDSSANLGFEAKLWLAADKLRNNMDAAEYKHVVLGLIFLKYISDTFDEHHARLVAGSVA 67

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDN 110
           K   + G+N + E     A   F+   +   + + S         +++     +   +  
Sbjct: 68  KSGDYEGANPEDEDEYLAA-NVFWVPVDARWAQIQSRAKLPSIGKDVDDAMVALERDNPR 126

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSE 169
            K         + + +      L ++      I+L    +    ++  ++E+ + +F S 
Sbjct: 127 LKGALNKNYGRADLDK----HRLGELIDLIGSIQLADVASRSKDLLGRVFEYFLTQFASA 182

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  VV +   +L                 +YDP CG+GG    +   V  
Sbjct: 183 EGKNGGQFYTPSCVVRVLVEMLAPYKG-----------RIYDPCCGSGGMFVQSEKFVEA 231

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  + +  + +R +E+D        ++   T  +DL   
Sbjct: 232 HGGQLG---DISIYGQESNPTTRRLAIMNLALRGIEADFG------VENADTFRRDLHPD 282

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            R  Y L+NPPF               +  +  R+  G+P   + +  ++ H  + L   
Sbjct: 283 LRADYVLANPPFNDS---------DWFRKDDDVRWQFGVPPKGNANFAWVQHFIHHLAPA 333

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G   A   + S   N    SGE +IR+ L+E DL++ +VALP  LF+ T I   LW 
Sbjct: 334 GFAGFVLA---NGSMSSN---QSGEGDIRQQLIEADLVDCMVALPGQLFYSTQIPVCLWF 387

Query: 410 LSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           L+  K         ERR +   I+A  L T I       R + D   ++I+  Y +    
Sbjct: 388 LTKSKAAEAKRHFRERRKQTLFIDARKLGTLIDRV---HRELTDADLQKIVTTYHAWRGD 444

Query: 463 KFSR 466
           + S 
Sbjct: 445 RVSH 448


>gi|303242501|ref|ZP_07328981.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302589969|gb|EFL59737.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 510

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 104/496 (20%), Positives = 195/496 (39%), Gaps = 67/496 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   +   +W+  +   G    + +   +L    ++ +    +  +  + +K+ 
Sbjct: 2   MEIKKYTQEEVNGTLWRACDTFRGKVDSSVYKDYVLVMLFIKYVSDIYKEHKEELMKKFD 61

Query: 61  AFGGSNIDLESFVKVAGY-SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
                  D E   +   Y  F      +   +     + N+   I +   +         
Sbjct: 62  N------DEEMVKRQMSYERFVLDEISTFDYIYDKRNQPNIGEIINTALAHVEEENKTKL 115

Query: 112 KAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFG 167
           + +F++ DF+S        E+  +L  + ++F  ++L P   V + V+ N YE++I  F 
Sbjct: 116 RGVFKNIDFNSEAVLGNTKERNAMLKHLLEDFKDLDLRPSRLVGEDVIGNAYEYMIANFA 175

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S+  +   +F TP +V  L + L+           P     +YDPTCG+G  L  A N +
Sbjct: 176 SDAGKKGGEFFTPSEVSELLSRLV----------KPKENDRIYDPTCGSGSLLIKAFNKI 225

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                          +GQE   +TH++C   M +  ++          I  G TLS  L 
Sbjct: 226 --------PSGKAQIYGQERNGQTHSLCRMNMFLHSID-------DARIAWGDTLSNPLH 270

Query: 288 ----TGKRFHYCLSNPPFGKKWE-------KDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                  +F   ++NPPF             +    + E       RF  G+P  S G  
Sbjct: 271 LENDKLMKFQVVVANPPFSLDKWAMGFVGEGNDKEFKMEEGLDPYKRFSWGVPPSSKGDY 330

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H+ + L      GGR  +VL    LF G     E +IR+ +++ +L++A++ LP++
Sbjct: 331 AFVLHMLHSLAE----GGRMGVVLPHGVLFRGA---SEGKIRQKIIDMNLLDAVIGLPSN 383

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T I   + +         R  V  I+A+      +  GK +  + +   ++I D Y
Sbjct: 384 LFFGTGIPACILVFRQN---RDRDDVLFIDASGDNYYEK--GKNQNKLREADIKRIEDAY 438

Query: 457 VSRENGKFSRMLDYRT 472
              EN +    +  + 
Sbjct: 439 EKYENIEKFAYVATKN 454


>gi|213962057|ref|ZP_03390322.1| type I restriction-modification system, M subunit [Capnocytophaga
           sputigena Capno]
 gi|213955410|gb|EEB66727.1| type I restriction-modification system, M subunit [Capnocytophaga
           sputigena Capno]
          Length = 510

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 179/479 (37%), Gaps = 63/479 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +  ++   +WK  + L        +   IL    ++ L    +    + REKY 
Sbjct: 1   MEENKITRDTINAIVWKACDTLRPVMGSGQYKDYILTLLFVKYLSDVRKEKIESYREKYN 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA------- 113
                  +     ++    F    + +   L       NL   I       +        
Sbjct: 61  -----GDEAMVSRQLQKDRFIIPEKSTFDYLYDHRNEPNLGEIIDIGLTALEEANRSKLT 115

Query: 114 -IFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGS 168
            +F    F+S        ++  +L K+  +F  ++L P     + V+ + YE+LI  F  
Sbjct: 116 NVFRSISFNSEAVFGPTKQRNEILKKLLTDFLNLDLKPSHLAGNDVIGDSYEYLIAHFAG 175

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E  + A +F TP +V  L   L+          +P     + DP CG+G  L      V 
Sbjct: 176 EAGKKAGEFYTPAEVSTLLAKLV----------APKAGDRIADPACGSGSLLIKVAKEVQ 225

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
                         +GQE    T A+C+  M +           + NI  G TL+     
Sbjct: 226 GKN--------YSLYGQENNGSTWALCLMNMFLH-------EQDAANITWGDTLNHPQLI 270

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 +F   ++NPPF       ++       +    RF  G+P  + G   F+ H+  
Sbjct: 271 ENDALMKFDVVVANPPFSLDKWGVEN-----AASDPYQRFHRGIPPKTKGDYAFISHMI- 324

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
             E      GR  +++    LF G   S E  IR+ L+E +L+EA++ LP +LF+ T+I 
Sbjct: 325 --ETTHETNGRVGVIVPHGVLFRG---SSEKTIRQQLIEENLLEAVIGLPANLFYGTSIP 379

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             + I +  K       V  I+A+  +      GK +  + D+    I+ +Y + +  K
Sbjct: 380 AAILIFNRAKGAN--TDVLFIDASKAYE----SGKNQNHLRDEDISHIVSVYQNYKKAK 432


>gi|84489290|ref|YP_447522.1| putative type I restriction-modification system, methyltransferase
           subunit [Methanosphaera stadtmanae DSM 3091]
 gi|84372609|gb|ABC56879.1| putative type I restriction-modification system, methyltransferase
           subunit [Methanosphaera stadtmanae DSM 3091]
          Length = 508

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 116/540 (21%), Positives = 221/540 (40%), Gaps = 70/540 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            ++    +W  A+ L G+    +F   +L F   R L   LE T + + E+         
Sbjct: 1   MSNYETKLWAIADKLRGNMDANEFKNYMLGFIFYRYLSEKLEMTLNELLEEDGINFQEAY 60

Query: 68  DLESFVK------VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASF------------ 107
             E  ++      +    ++   +Y  S++ +     R  LE    +F            
Sbjct: 61  QDEELIEDLKEEGIEKLGYFIQPKYLFSSVINEIDKGREILECLSNAFIEINDSSFNTES 120

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            D+ + +FED D +S  ++L     EK  L+  I ++ S I+   +     ++ + YE+L
Sbjct: 121 QDDFQNLFEDVDLNS--SKLGNTNAEKNKLISGILQDISDIDFELEKDNSDILGDAYEYL 178

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F S   + A +F TP++V  +   ++              ++++YDPTCG+G  L  
Sbjct: 179 ISQFASSAGKKAGEFYTPQEVSTILARIVTLNK--------TRLKSVYDPTCGSGSLLLR 230

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       K   +   +GQEL   T+ +    M++  ++ +       NI+QG +L
Sbjct: 231 VS----------KEADVSEFYGQELNQTTYNLARMNMILHGVKYN-----HFNIKQGDSL 275

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D     +F   ++NPPF  KW  DK  +  E  +G        L   S     F+ H+
Sbjct: 276 ENDRHEELKFDAVVANPPFSAKWSSDKSFINDERFSGY-----GKLAPKSKADYAFVQHM 330

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
              L       G  A+VL    LF G A   E  IR++L++  + ++A++ LP ++F+ T
Sbjct: 331 IYHLNEQ----GTLAVVLPHGVLFRGAA---EGTIRKYLIKELNYLDAVIGLPKNIFYGT 383

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    +  I+A++ +   +N    +  +  +   +I+  Y +RE 
Sbjct: 384 SIPTCILVF--KKCREEDDNILFIDASEYYEKAKN----QNKLRPEDIEKIVTTYKNREE 437

Query: 462 GK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            + +S              +  P  +    ++  +   E     RK+    +     I+K
Sbjct: 438 IEKYSHKATIEEIEENDYNLNIPRYVDTFEEEEPIDLDEVVREIRKIDEEMKEVDAKIIK 497


>gi|319428577|gb|ADV56651.1| N-6 DNA methylase [Shewanella putrefaciens 200]
          Length = 499

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/526 (21%), Positives = 203/526 (38%), Gaps = 58/526 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
             L   +W  A  + G    +D+   I P    +R+    +        +      +  D
Sbjct: 7   KDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEYEDALTQIGDEELAKGD 66

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           +   +++     ++ S +S +       ++     I   +     IF D  +++   RL 
Sbjct: 67  MFHRIQIPELCHWD-SVFSETKDIGQALKDAFRG-IEMANPKLHGIFGDASWTNK-ERLS 123

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR +V L  
Sbjct: 124 D-ELLATLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPRTIVRLMV 182

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L           P    ++YDP CGTGG L + ++HV + G   ++       GQE  
Sbjct: 183 NIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK---IKGQEKN 229

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKK 304
             T A+    + +   E         +I +G TL +  F      + F   ++NPPF  K
Sbjct: 230 LTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLKHDRLETFDCVIANPPFSLK 282

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                            GR   GL   ++G   ++ H+   L       GR A+VL    
Sbjct: 283 EWGY-----DYWSADPYGRAKYGLAPKTNGDFAWVQHMFASLNES----GRMAVVLPHGV 333

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G A   E  IR  LL+ + I A++ + ++LF+ T I   + +L  ++    +  V +
Sbjct: 334 LFRGGA---EGTIRENLLKENRIVAVIGVASNLFYGTGIPACILVLRKQRPVAHQDHVLI 390

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--------------FSRMLDY 470
           INA +++T     G+ +  +++ Q   I DIY                      S + D 
Sbjct: 391 INAEEIFTK----GRAQNTLSETQADNIYDIYRQMRTKGPEADDIEGVARWVSHSEIEDN 446

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
                    V +PL    I  +  L   +  +   + +       L
Sbjct: 447 DFNLNIARYVQKPLEKETITVEEALKDFQLKLAALEKAEKELETLL 492


>gi|156978013|ref|YP_001448919.1| type I restriction enzyme M protein [Vibrio harveyi ATCC BAA-1116]
 gi|156529607|gb|ABU74692.1| hypothetical protein VIBHAR_06810 [Vibrio harveyi ATCC BAA-1116]
          Length = 526

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 176/471 (37%), Gaps = 51/471 (10%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLES 71
           +W   +   G    + +   IL    L+ +    +     +  ++        + +  +S
Sbjct: 36  VWSACDTFRGTVDPSIYKDFILTMLFLKYISDVRQDKVEELTTQFGDNKEMVEAMLASQS 95

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS--STIARLEK 129
           F   AG +F++  E        +     L +   +     K +F+D  F+        +K
Sbjct: 96  FKIPAGSTFWDLYEARFEAGNGSRIDQALHAIEEANGTKLKGVFQDISFNTDKLGDEKQK 155

Query: 130 AGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             +L  + ++F    L+          V+ N YE+LI+ F +   + A +F TP +V  L
Sbjct: 156 NDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEYLIKHFAAGSGKSAGEFYTPPEVSDL 215

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            + +L           P    ++ DP CG+G  L      V     +          GQE
Sbjct: 216 LSIIL----------EPQQGDSICDPACGSGSLLMKCGKQVQ---KNFGGSKQYALFGQE 262

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPF 301
               T ++    M +   +       +  I+ G T+              F    +NPPF
Sbjct: 263 AIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDSNGGLLHFDVVTANPPF 315

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                  +D      +N   GRF  G+P  + G   F+ H+   L+      GR  +V+ 
Sbjct: 316 SLDKWGHED-----AENDHFGRFRRGVPPKTKGDYAFISHMIETLKPET---GRMGVVVP 367

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF     S E +IR+ L+E +L++A++ LP  LFF T I   + I   +K       
Sbjct: 368 HGVLFR---ASSEGKIRKQLIEENLLDAVIGLPEKLFFGTGIPAAILIFKKKK---DTND 421

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           V  I+A+  +      GK + ++  +   +I+  Y S +N      +    
Sbjct: 422 VMFIDASREF----KSGKNQNVLTAENIDKIVKTYRSGDNVDKYAYVATLD 468


>gi|118497300|ref|YP_898350.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella tularensis subsp.
           novicida U112]
 gi|194323604|ref|ZP_03057381.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. novicida FTE]
 gi|118423206|gb|ABK89596.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella novicida U112]
 gi|194322459|gb|EDX19940.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. novicida FTE]
          Length = 495

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 112/530 (21%), Positives = 204/530 (38%), Gaps = 73/530 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +W   +   G      +   IL    ++ L    +  +  + ++Y      
Sbjct: 4   TTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSQRYNG---- 59

Query: 66  NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFE 116
             D +   +  +   F      +   L +   + NL   I +  D  +         IF 
Sbjct: 60  --DEKMIERALSREKFRLDDSCTFDYLYANRDKENLGEIINAALDRIEEDNPQKLTGIFR 117

Query: 117 DFDFSS---TIARLEKAGLLYKICKNFS--GIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
             DF+         ++  +L  + K+F+   ++L P  +  + V+ + YE+LI  F S+ 
Sbjct: 118 GVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLDGNDVIGDSYEYLIANFASDS 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+   D              YDPTCG+G  L  A   +   
Sbjct: 178 GKKGGEFFTPSQVSSLLAMLVQAKDGDEI----------YDPTCGSGSLLIKAAKEIGSN 227

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
                       +GQE    TH++C   M +  +          NIQ G T+        
Sbjct: 228 N--------FAIYGQERNSTTHSLCRMNMFLHDIN-------DANIQLGDTIRNPRILEN 272

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K+F   ++NPPF             +  +    RF  G+P  S G   F+ H+   L
Sbjct: 273 DKLKKFDVVVANPPFSLD-----KWGADDVTSDVYSRFEFGIPPKSKGDYAFIQHMLASL 327

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  GR A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I   
Sbjct: 328 NES----GRMAVVVPHGVLFRGAA---EGKIRQQIIDNNLLDAVIGLPSNLFFGTSIPAC 380

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +   +K       V  I+A++ +      GK +  + DD  ++I D Y SRE+  K+S
Sbjct: 381 IMVFKKQKDS---NDVLFIDASNEFEK----GKNQNKLTDDNIKKIFDTYKSRESLEKYS 433

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +            +  P    ++        ++ + T + ++ L     
Sbjct: 434 HVASLEEIKENDYNLNIP---RYVDTFEEEEPVDIEATKQTIAELEAKRE 480


>gi|258513150|ref|YP_003189406.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635053|dbj|BAI01027.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638108|dbj|BAI04075.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641162|dbj|BAI07122.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644217|dbj|BAI10170.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647272|dbj|BAI13218.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650325|dbj|BAI16264.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653316|dbj|BAI19248.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656369|dbj|BAI22294.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 508

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/538 (20%), Positives = 204/538 (37%), Gaps = 59/538 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S  ++   +W   +   G      +   +L    L+ +    +      +++Y 
Sbjct: 1   MTE-QISQDTINKALWNACDTFRGTVSPDTYRDYVLTMLFLKYISDVWQDHYDTYKKEYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113
                  + +  E FV   G  FY   +   +          L +   +     K     
Sbjct: 60  DNPELIEAMMAQERFVLPKGADFYTLYKERNTPGNGERIDKALHAIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F+        +K  +L  + ++F+  +L+  P  V +  V+ N YE LI+ F +
Sbjct: 120 VFQDISFNSDRLGDEKQKNTVLRHLLEDFAKPDLNLRPSRVGNLDVIGNGYEFLIKNFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   +L          SP    ++ DP CG+   L      V 
Sbjct: 180 SGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPACGSASLLMKCGKQVT 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-----LS 283
               +H        +GQE    T +     M +   +       +  I+ G T     L 
Sbjct: 230 Q---NHNGSKDYALYGQEAIGSTWSFAKMNMFLHGED-------NHRIEWGDTIRSPKLL 279

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     RF    +NPPF       +DA E  H      RF  G+P  + G   F++H+ 
Sbjct: 280 DDKNHLMRFDVVTANPPFSLDKWGHEDAAEDVH-----HRFARGVPPKTKGDYAFILHMI 334

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+      GR  +V+    LF G   S E  IR+ L+E +L++A++ LP  LFF T I
Sbjct: 335 STLKDRT---GRMGVVVPHGVLFRG---SSEGRIRQKLIEENLLDAVIGLPEKLFFGTGI 388

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + I    +  +    V  I+A+  +      GK + ++ ++   +I++ Y +R++  
Sbjct: 389 PAAILIFRKDRKTK---DVLFIDASREF----KAGKNQNVLTEENITKIVNTYRTRKDVD 441

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA--RLEADITWRKLSPLHQSFWLDI 518
           K++ +            +  P  +    ++  +    +  +    K         +D 
Sbjct: 442 KYAHLATPDEIRENDYNLNIPRYVDTFEEEEEIDLNAVRKERAEIKAELAKLEAQMDA 499


>gi|58038320|ref|YP_190289.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H]
 gi|58000734|gb|AAW59633.1| Type I restriction enzyme M protein [Gluconobacter oxydans 621H]
          Length = 508

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 191/489 (39%), Gaps = 56/489 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S  ++   +W   +   G      +   +L    L+ +    +      +++Y 
Sbjct: 1   MTE-QISQDTINKALWSACDTFRGTVSPDTYRDYVLTMLFLKYISDVWQDHYDGYKKEYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113
                  + +  E FV   G  FY   +   +          L +   +     K     
Sbjct: 60  DNPELIEAMMAQERFVLPKGSDFYTLYKDRNTPGNGERIDKALHAIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGS 168
           +F+D  F+        +K  +L  + ++F+  +L+  P  V +  V+ N YE LI+ F +
Sbjct: 120 VFQDISFNSDKLGDEKQKNTILRHLLEDFAKPDLNLRPSRVGNLDVIGNGYEFLIKNFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   +L          SP    ++ DP CG+   L      V 
Sbjct: 180 SGGQKAGEFYTPPEVSELLARIL----------SPQPGESICDPACGSASLLMKCGKQVT 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-----LS 283
               +HK       +GQE    T +     M +   +       +  I+ G T     L 
Sbjct: 230 Q---NHKGSKDYALYGQEAIGSTWSFAKMNMFLHGED-------NHRIEWGDTIRNPKLL 279

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     RF    +NPPF       +DA E  H      RF  G+P  + G   F++H+ 
Sbjct: 280 DDKNHLMRFDVVTANPPFSLDKWGHEDAAEDVH-----HRFARGVPPKTKGDYAFILHMI 334

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+      GR  +V+    LF G   S E  IR+ L+E +L++A++ LP  LFF T I
Sbjct: 335 STLKDRT---GRMGVVVPHGVLFRG---SSEGRIRQKLIEENLLDAVIGLPEKLFFGTGI 388

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + I    +  +    V  I+A+  +      GK + ++ ++   +I+D Y +R++  
Sbjct: 389 PAAILIFRKDRKTK---DVLFIDASREF----RAGKNQNVLTEENITKIVDTYRARKDVD 441

Query: 464 FSRMLDYRT 472
               L    
Sbjct: 442 KYAHLATPD 450


>gi|253995602|ref|YP_003047666.1| adenine-specific DNA-methyltransferase [Methylotenera mobilis JLW8]
 gi|253982281|gb|ACT47139.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylotenera mobilis JLW8]
          Length = 513

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 105/555 (18%), Positives = 198/555 (35%), Gaps = 56/555 (10%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   +    L   +WK A+ L  +    ++  ++L    L+ +    E   + +    
Sbjct: 1   MAKEQLTKQEPLEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDTFEQQFAKLAAGV 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAK 112
             + GS+   +    +A   F+   E   S L S   +       +N    I + + + K
Sbjct: 61  GEYAGSD-PEDKDEYLAENVFFVPQEARWSYLQSQAKQPDIGKMVDNAMDAIEAENASLK 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +        L ++      I L    +    V+ +++E+ +  F     
Sbjct: 120 GVLPKVFARDNL----DPASLGQLIDLVGNIALGDAKSRSADVLGHVFEYFLGEFALAEG 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR VV L   +L                 ++DP CG+GG    +   +AD  
Sbjct: 176 KQGGQFYTPRSVVELLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFIADH- 223

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + IR +E+   +  ++      +   D     +
Sbjct: 224 --QGKVNDISIYGQESNQTTWRLAKMNLAIRGIEASQVKWNNEG-----SFLNDSHKDLK 276

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +            GR+  G+P   + +  +L H    L     
Sbjct: 277 ADYIIANPPFNVSDWSGE-------LLRNDGRWQFGVPPAGNANFAWLQHFIYHLNPT-- 327

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL 410
             G+A IVL+   L +    SGE +IR+ L+E  ++I+ IV LP  LF  T I   LW +
Sbjct: 328 --GQAGIVLAKGALTS--KTSGEGDIRKALIEQGNVIDCIVNLPAKLFLNTQIPAALWFM 383

Query: 411 SNR----KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           S      K   R  ++  I+A +L   I     + + ++    +QI D Y +  N   S 
Sbjct: 384 SRNRTNGKFRNRSNEILFIDARNLGHLINR---RTKELSHTDIKQITDTYHNWRNPNGSY 440

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             D   F    + + R   + ++L       L  D      +    +   +    ++++ 
Sbjct: 441 A-DVSGFC-ASVSLERVKELDYVLTPGRYVGLPDDEDDFNFAERFNALKAEYEAQLLEEE 498

Query: 527 YPYGWAESFVKESIK 541
                    +     
Sbjct: 499 KLNKAIAENLARVKL 513


>gi|325913365|ref|ZP_08175732.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 60-B]
 gi|325477291|gb|EGC80436.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 60-B]
          Length = 502

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 101/540 (18%), Positives = 203/540 (37%), Gaps = 60/540 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +    +    F+   E    T+             +N    I S +   K 
Sbjct: 59  ---GDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIESENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D     +       T + DL    + 
Sbjct: 222 NCG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I++LP  LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALSSQSC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVQIPVTLWFISQ 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K  +++GK   I+A  +   +     K R  +++  +++ D + + +NG          
Sbjct: 380 NK--KQKGKTVFIDARKMGHMVDR---KHRDFSEEDIQKLADTFEAFQNG-----TLEDE 429

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+  +  +    +  ++L       +E      +      +     L  M ++ +    
Sbjct: 430 KGFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSDMFERSHELED 489


>gi|229526954|ref|ZP_04416351.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae 12129(1)]
 gi|229335566|gb|EEO01046.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae 12129(1)]
          Length = 507

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/540 (18%), Positives = 193/540 (35%), Gaps = 57/540 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-- 60
               +  S+   +W   +   G      +   IL    L+ +    +      + +Y   
Sbjct: 2   NDKINQDSINKALWNACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDGYKAEYGDE 61

Query: 61  -AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IF 115
                  +  E FV     SFY+  E              L +   +     K     +F
Sbjct: 62  PELIEEMMKNERFVLPKAASFYSLYERRHEPGNGERIDQALHAIEEANGTKLKDAGKSVF 121

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L  + ++F+  EL+          V+ N YE+LI+ F +  
Sbjct: 122 QDISFNTDKLGEEKQKNTILRHLLEDFAKPELNLKPSRVGTLDVIGNAYEYLIKNFAASG 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    ++ DP CG+G  L      V   
Sbjct: 182 GQKAGEFYTPPEVSDLIAELL----------DPQPGDSICDPACGSGSLLMKCGRKVVAN 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                       +GQE    T ++    M +   +       +  I+ G T+       K
Sbjct: 232 HGS----KQYALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDK 280

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             E ++ +  RF  G+P  + G   F++H+   
Sbjct: 281 NGDLMLFDIVTANPPFSLD-----KWGHDEAEHDKFSRFRRGVPPKTKGDYAFILHMIET 335

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR  +V+    LF G   S E +IR+ L++ +L++ ++ LP  LF+ T I  
Sbjct: 336 LKPKS---GRMGVVVPHGVLFRG---SSEGKIRQQLIDENLLDTVIGLPEKLFYGTGIPA 389

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +    K++     V  I+A+  +      GK + ++  +   +I+  Y +  +  K+
Sbjct: 390 AILLFKKNKSD---DNVMFIDASRDF----KAGKNQNLLTQENIAKIVATYHAGNDVDKY 442

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +            +  P  +    ++  +  +       +L         ++ K + +
Sbjct: 443 AYVASLEEIKENDYNLNIPRYVDTFEEEEEIDLMAVRAQREQLKAQLTELEAEMAKYLEE 502


>gi|46580119|ref|YP_010927.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449535|gb|AAS96186.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233887|gb|ADP86741.1| type I restriction-modification system, M subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 506

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 184/479 (38%), Gaps = 52/479 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63
           S   + + +W   +   G    + +   +L    L+ +    +      + +Y       
Sbjct: 6   SQKEVNDAVWNACDTFRGVVDASAYKDYVLTMLFLKYISDVWQDNYDTYKAEYGDAPELI 65

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +  E FV     SFY   E              L +   +       +F+D  F+ST
Sbjct: 66  EEMMKNERFVLPKDASFYALYERRFEAGNGERIDKALHAIEEANMGKLNDVFQDISFNST 125

Query: 124 --IARLEKAGLLYKICKNFSGIELH--PDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 +K  +L  + ++FS  EL+  P  + +  ++ N YE LI+ F +   + A +F 
Sbjct: 126 KLGDDKQKNDILRHMLEDFSKPELNLRPSRIGNLDIIGNAYEFLIKHFAASSGKKAGEFY 185

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L   L+          +P     + DP CG+   L      + D   + K   
Sbjct: 186 TPPEVSQLIAELV----------NPQEGDEICDPACGSASLLMKCAKLIKDRFGNRK--- 232

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFH 293
               +GQE    T ++    M +   +       +  I+ G TL   L        K F 
Sbjct: 233 -YALYGQEAIGSTWSLAKMNMFLHSED-------NHRIEWGDTLRNPLLLDGDDHLKHFD 284

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +       +    GRF  G+P  + G   F++H+   L+    G 
Sbjct: 285 IVVANPPFSLDKWGHEA-----AEADRFGRFRRGIPPKTKGDYAFILHMIETLKP---GT 336

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +V+    LF     S E EIR+ L++ +L++ ++ LP  LF+ T I   + +    
Sbjct: 337 GRMGVVVPHGVLFR---ASSEGEIRKQLIKENLLDMVIGLPEKLFYGTGIPAAILVFRKN 393

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K +     V  I+A+  +      GK +  + D+  +++LD   +RE+      L    
Sbjct: 394 KKD---NNVLFIDASREYQD----GKNQNFLRDEDIQKVLDTAKARESVDKYAYLATLE 445


>gi|163801600|ref|ZP_02195498.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174517|gb|EDP59319.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 499

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/533 (21%), Positives = 203/533 (38%), Gaps = 68/533 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +       E+        
Sbjct: 5   NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFEEAMEQVG------ 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       +     +      + +   +    L+     I   +     IF D  ++
Sbjct: 59  -DEELAKGDMFHRIQIPANCHWKDVFAETKDIGQALKDSFRGIELENPQLHGIFGDASWT 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR
Sbjct: 118 NK-ERLSD-ELLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPR 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L           P    ++YDP CGTGG L + ++HV + G   ++     
Sbjct: 176 TIVRLMVNIL----------DPQANESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
             GQE    T A+    + +   E          I +G TL    F      + F   ++
Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQEDFE-------IVRGDTLRDPKFLQNDQLENFDCVIA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K             +   GR   GL   ++G   ++ H+   L       GR A
Sbjct: 276 NPPFSLKEWGH-----DYWTSDPYGRASFGLAPKTNGDFAWVQHMFASLNDE----GRMA 326

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G A   E +IR  LL+ + I A++ + ++LF+ T I   + +L   + EE
Sbjct: 327 VVLPHGVLFRGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKARPEE 383

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG--------------K 463
            +  V ++NA +++T     G+ +  +++ Q  +I DIY                     
Sbjct: 384 HKDHVLIVNAEEIFTK----GRAQNTLSEPQADEIYDIYQKMRTKGPKADDIEGVARWVP 439

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            S + +          V +PL    I  +  L   +  +   +++       L
Sbjct: 440 HSEIEENDFNLNIARYVQKPLEEETITVEEALKDFQQKLVALEVAEQELEALL 492


>gi|328545367|ref|YP_004305476.1| Type I restriction-modification system, M subunit [polymorphum
           gilvum SL003B-26A1]
 gi|326415109|gb|ADZ72172.1| Type I restriction-modification system, M subunit [Polymorphum
           gilvum SL003B-26A1]
          Length = 505

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 175/465 (37%), Gaps = 56/465 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESF 72
           W   +   G      +   IL    L+ +           R +Y    A     ++ E F
Sbjct: 15  WAACDTFRGAVDAGQYKDYILVMLFLKYISDLWNDHVETYRNQYGGDEARIRRRLERERF 74

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA---RLEK 129
           +   G SFY+                 LE    +     + +F + DF+S        ++
Sbjct: 75  ILPEGASFYDLYAQRNEANIGELINIALEKIEDANRAKLEGVFRNIDFNSEANLGRPKDR 134

Query: 130 AGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
              L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A +F TP  V  L 
Sbjct: 135 NRRLKNLLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKAGEFYTPTAVSRLL 194

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L           +P    T+ DP CG+G  L  A   V               +GQE+
Sbjct: 195 AKL----------AAPQPGNTICDPACGSGSLLIQASQEVGSEN--------FALYGQEV 236

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGK 303
              T A+    M +           +  I+   TL+           RF   L+NPPF  
Sbjct: 237 NGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDHLMRFDVVLANPPFSL 289

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                ++       +    RF  G+P  S G   F+ H+           GR A+++   
Sbjct: 290 DKWGAEN-----AASDPYNRFWRGIPPRSKGDYAFITHMIEIARRQS---GRVAVIVPHG 341

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERR 419
            LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + I    + E      R
Sbjct: 342 VLFRGGA---EGRIRQQLIEENLLDAVVGLPANLFTTTGIPVAILIFDRSREEGGANAGR 398

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             V  I+A+  +T     GK + ++++    ++L+ Y SR     
Sbjct: 399 RDVLFIDASKEFTP----GKTQNVMDEAHVAKVLETYRSRAEVPR 439


>gi|259507945|ref|ZP_05750845.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
 gi|259164440|gb|EEW48994.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
          Length = 523

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 194/562 (34%), Gaps = 70/562 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L + +WK A+ L G    + +  VIL    L+ +  A    R+ + ++ +A G ++ 
Sbjct: 1   MKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFAERRTQLHDELVAEGMTDD 60

Query: 68  DLESFVKVAGY-----SFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDF-- 118
                +           F+         L         N  +   +  +      +    
Sbjct: 61  QTAMLIDDTDEYTGHGVFWVPDNARWEYLAQNAKGLSANYGNAPRNIGELVDDAMDAIMV 120

Query: 119 ---DFSSTIARL-----EKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLIRRFGS 168
                S+T+ R+          L ++   F+              ++  +YE+ + +F  
Sbjct: 121 ANPALSATLPRIYNRESVDQRRLGELIDLFNTARFTGQGPGRARDLLGEVYEYFLEKFAR 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP                 L +        +YDP CG+GG        + 
Sbjct: 181 AEGKRGGEFYTP-----------AGVVRVLVEVLEPTSGRVYDPCCGSGGMFVQTEKFLD 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +  +GQEL   T  +    + I  L ++         + G T ++DL  
Sbjct: 230 AHNKDRTA---IAVYGQELNERTWRMAKMNLAIHGLNANLGP------RWGDTFARDLHP 280

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +  Y ++NPPF          ++   +N E  R+  G+P  ++ +  ++ H+ +KL  
Sbjct: 281 EMQADYIMANPPFN---------IKDWARNEEDPRWRYGVPPKNNANYAWIQHIISKLAP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             + G   A   + S   N     GE +IR  L+E DL+  +VALPT LF  T I   +W
Sbjct: 332 GGSAGVVMA---NGSMSSNSG---GEGKIRAELVEADLVSCMVALPTQLFRSTGIPVCVW 385

Query: 409 ILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             +  KT       +R G+V  I+A +L   I       R ++D+   +I D + +    
Sbjct: 386 FFAKDKTVGDQGAIDRTGQVLFIDARNLGHMIDRAE---RALSDEDIAKIADTFHTWRGT 442

Query: 463 KFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
             ++     D   F Y    +       + L                           + 
Sbjct: 443 PSAKGRTYEDEAGFCYSA-TLEEIKDADYALTPGRYVGAAE---IEDDGEPIDEKIERLK 498

Query: 520 KPMMQQIYPYGWAESFVKESIK 541
           K ++ Q        + V+E ++
Sbjct: 499 KELLDQFDESERLAAVVREQLR 520


>gi|312875021|ref|ZP_07735039.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089416|gb|EFQ47842.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2053A-b]
          Length = 502

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 98/540 (18%), Positives = 203/540 (37%), Gaps = 60/540 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  +A+     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D     +       T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I+++P+ LF+   ++  LW ++ 
Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISMPSKLFYSVTLSVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K  +++GK   I+A  +   +     K R   D+  +++ + + + +NG          
Sbjct: 380 DK--KQKGKTLFIDARHMGHMVDR---KHRDFTDEDIQKLANTFEAFQNG-----TLEDK 429

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+  +  +    +  ++L       +E      +      +     L  M  + +    
Sbjct: 430 KGFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSEMFAKSHELED 489


>gi|187930243|ref|YP_001900730.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|187727133|gb|ACD28298.1| N-6 DNA methylase [Ralstonia pickettii 12J]
          Length = 503

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/523 (22%), Positives = 212/523 (40%), Gaps = 52/523 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-AVREKYLAFGGS 65
           S   L +++W+ A  L G     D+ + I P    +R+    +     A+ E       +
Sbjct: 5   SQQELESYLWRAAVLLRGLIDAGDYKQFIFPLLFFKRVSDVWDEEYQSALVESDGDLSYA 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-IFEDFDFSSTI 124
                   ++     +N    +   +GS   +  + + I   + +    IF D  +++  
Sbjct: 65  QFAENHRFQIPEGVHWNDVRQTPKNVGS-AIQKAMRA-IELANPDMLDGIFGDASWTNR- 121

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL     L  + ++FS   L    VP+  + N YE+LI++F  +    A +F T R VV
Sbjct: 122 ERLPD-ETLKDLIEHFSTQTLSVANVPEDELGNAYEYLIKKFADDSGHTAAEFYTNRTVV 180

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           HL T LL          +P    ++YDPTCGTGG L  A++ V   G  ++       +G
Sbjct: 181 HLMTQLL----------APLAGESIYDPTCGTGGMLISALDEVKRSGGEYRTL---TLYG 227

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPP 300
           QE    T ++    + +  +       +   I +G TL++         ++F   L+NPP
Sbjct: 228 QERNLITSSIARMNLFLHGV-------VDFEIIRGDTLAEPKHIEGDRLRQFDVILANPP 280

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +  K         +   + + GR   G P        F  H+   L       GR A++ 
Sbjct: 281 YSIKQWD-----REAWSSDKWGRNTLGTPPQGRADYAFHQHILTSLTTK----GRCAVLW 331

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF       E  +R  ++E D +EA++ L  +LF+ + + + + I + RKT ER+G
Sbjct: 332 PHGVLFRNE----EQAMRAKMVEQDWVEAVIGLGPNLFYNSPMESCVVICNRRKTSERKG 387

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK 479
           KV  I+A +  T  R     +  +  + +R+IL  Y    +   F+++      G     
Sbjct: 388 KVIFIDAVNEVTRERA----QSFLKPEHQRRILAAYEVFADEPGFAKVATLAEIGGNGGN 443

Query: 480 VLRPLRMS----FILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +  PL +      +   +    +     W K     ++FW  +
Sbjct: 444 LSIPLYVKRIAAVVATDSNGDAVSLRSAWDKWQTDGRTFWQQM 486


>gi|206603733|gb|EDZ40213.1| N-6 DNA methylase [Leptospirillum sp. Group II '5-way CG']
          Length = 524

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/482 (20%), Positives = 179/482 (37%), Gaps = 63/482 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +W+ A+ L  +    ++  V+L    L+ +  + E   + +  +           E
Sbjct: 17  LETKLWQAADKLRNNMDAAEYKHVVLGLLFLKYVSDSFEEHHAKLTGEMDQGANPEDPDE 76

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSST 123
                A   F+   E   S L +   R  +   I          + + KA+    DF+  
Sbjct: 77  Y---RADNVFWVPKEARWSVLQANAKRPEIGKVIDDAMVAIERDNTSLKAVLPK-DFARP 132

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                    L ++      I L         ++  +YE+ + +F S   +    F TPR 
Sbjct: 133 G---LDKQRLGELIDLVGTIGLGDKEHRSRDMLGRVYEYFLSQFASAEGKKGGQFYTPRS 189

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV +   +L                 +YDP CG+GG    +   +   G        +  
Sbjct: 190 VVRVLVEMLAPYKG-----------RVYDPCCGSGGMFVQSEKFIEVHGGRIG---DISI 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + ++  ++ +       +  +DL    +  Y L+NPPF 
Sbjct: 236 YGQESNHTTWKLAAMNLAIRGIAANLGKENA------DSFHRDLHPDLKADYILANPPFN 289

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                         +  E  R+  G+P + + +  ++ H  + L       G A  VL++
Sbjct: 290 SSDWGGD-------RLREDRRWVYGVPPVGNANFAWVQHFISHLAP----NGVAGFVLAN 338

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
             L      SGE EIR+ ++E D+++ IVALP  LF+ T I   LW +S  K        
Sbjct: 339 GSL--SSNQSGEGEIRKNMVEGDIVDCIVALPGQLFYSTQIPVSLWFVSRNKKNGKGQEG 396

Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
               +R G++  I+A  L + + R      R ++D+   +I   Y         +  D  
Sbjct: 397 HALRDRSGEILFIDARKLGFMADRT----HRDLSDEDIAKIAGTYHHWRGDGDGQYEDIP 452

Query: 472 TF 473
            F
Sbjct: 453 GF 454


>gi|167631092|ref|YP_001681591.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1]
 gi|167593832|gb|ABZ85580.1| n-6 DNA methylase [Heliobacterium modesticaldum Ice1]
          Length = 486

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 96/523 (18%), Positives = 191/523 (36%), Gaps = 65/523 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L G+ + +++  V+L    L+ +  + E   + +  +     G   + +    +  
Sbjct: 1   MADKLRGNIEASEYKHVVLGLIFLKYISDSFEEKYNELVAE-----GEGFEEDIDAYMED 55

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIARLEKA 130
             F+   E     +     +  +          I   + + K +         + +    
Sbjct: 56  NIFFVPPEARWDYIKEQAKQPTIGQIIDDAMVAIEKNNPSLKGVLPKNYARPELDK---- 111

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L ++   FS      +     V+  +YE+ + +F         +F TP  +V L   +
Sbjct: 112 TKLGELIDLFSFKVGDKEAKAKDVLGRVYEYFLGKF----GSSEGEFYTPPSIVKLLVEM 167

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +                 +YDP CG+GG    +   V +          +  +GQE    
Sbjct: 168 I-----------EPYKGRIYDPCCGSGGMFVQSQRFVEEH---QGRRDDIHVYGQEYTAT 213

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +C   + IR ++++         +   T + DL    R  Y L+NPPF  K      
Sbjct: 214 TWRLCKMNLSIRGIDANLGE------RDDDTFANDLHKSLRADYILANPPFNIKDWGA-- 265

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                ++     R+  GLP  ++ +  ++ H+ +KL      G   A   + S L N   
Sbjct: 266 -----NRLANDARWKYGLPPANNANYAWIQHIISKLSPSGVAGFVMA---NGSMLTN--- 314

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLIN 426
            S ESEIR+ ++E  L++ IV +P++LF+   I   LW LS  K      +R  ++  I+
Sbjct: 315 TSNESEIRKNIIEAKLVDCIVTMPSNLFYTVTIPVCLWFLSKNKMPKGLRDRSDEILFID 374

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLR 485
           A  +         K R+++++  ++I   Y + + G+    +     G+ +   +     
Sbjct: 375 ARKMGYMEDR---KHRVLSEEDIQRIAQTYRNWKKGEGYEDV----KGFCKSATLAEVRE 427

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             +IL       +E      +      S     L  M  +   
Sbjct: 428 HEYILTPGRYVGVEEVEADTEAFDEKMSRLTGELAEMFAKSRH 470


>gi|251771139|gb|EES51722.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 525

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/493 (20%), Positives = 182/493 (36%), Gaps = 64/493 (12%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           T  T  A+ L     +W+ A+ L  +    ++  V+L    L+ +  A E     +    
Sbjct: 6   TSKTSDASPLGFEAKLWQAADKLRNNMDAAEYKHVVLGLIFLKYVSDAFEEFHDRLIST- 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112
                     +     A   F+   E   STL +   R  +   I          + + K
Sbjct: 65  -EIAAEADPEDPDEYRAENIFWVPPEARWSTLQAHAKRPEIGKIIDDAMVAIERENKSLK 123

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           AI       +++ +      L ++      I     D     ++  +YE+ + +F S   
Sbjct: 124 AILPKDYARTSLDK----QRLGELVDLVGTIGLGQKDHRSKDILGRVYEYFLSQFASAEG 179

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR VV +   +L                 ++DP CG+GG    +   +   G
Sbjct: 180 KRGGQFYTPRSVVSVLVEMLAPYKG-----------RVFDPCCGSGGMFVQSEKFIEAHG 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + +R +E++  +      +   +  +DL    +
Sbjct: 229 GRIG---DISIYGQESNNTTWKLAAMNLALRGIEANLGK------ENDDSFHRDLHPDLK 279

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +       +  E  R+  G+P   + +  ++ +    L     
Sbjct: 280 ADYILANPPFNSSDWGGE-------RLREDKRWVYGVPPTGNANYAWVQNFIYHLAP--- 329

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL++  L      S E EIR+ ++E D+++ IVA+P  LF+ T I   LW +S
Sbjct: 330 -NGVAGFVLANGSL--SSNQSNEGEIRKSMVEADIVDCIVAMPGQLFYSTQIPVSLWFVS 386

Query: 412 NRKT----------EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             K            +R G++  I+A  L + S R      R ++ D   +I D Y +  
Sbjct: 387 RNKKNGKGVEGRPLRDRSGEILFIDARKLGFMSDRT----HRDLSVDDLARITDTYHNWR 442

Query: 461 NGKFSRMLDYRTF 473
                   D + F
Sbjct: 443 GDGTGTYEDVQGF 455


>gi|329736387|gb|EGG72656.1| putative type I restriction-modification system, M subunit
           [Staphylococcus epidermidis VCU045]
          Length = 498

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 106/535 (19%), Positives = 196/535 (36%), Gaps = 60/535 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G     ++  V L    L+ +  + E     +  K   +       E   
Sbjct: 9   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQDEYL- 65

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126
             A   F+   E     +     +  +   I          +++ K +         + +
Sbjct: 66  --AENIFWVPKEARWHYINDNAKKPEIGQLIDKAMIAIENENESLKGVLPKEYARPALDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L
Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V     H      +  +GQE
Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR ++++         +   T   DL  G +  Y L+NPPF     
Sbjct: 226 SNPTTWKLAKMNLAIRGIDNNLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +       +  +  R+  G+P   + +  ++ H+ +KL       G A  VL++  + 
Sbjct: 280 GQE-------RLLDDYRWQFGVPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K  ER+ ++  I+
Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNK--ERKNEILFID 384

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLR 485
           A ++   +    K     +D+  +++   Y S +        D    G+ +I  +     
Sbjct: 385 AREIGHMVSRTLK---EFSDEDIQKVAQTYHSWKGTNDKSYEDIA--GFCKIANLEEVKN 439

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
             +IL       L       +     +     I   + +Q       E  +++S+
Sbjct: 440 NEYILTPGRYVGLAD---VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL 491


>gi|148656810|ref|YP_001277015.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148568920|gb|ABQ91065.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 523

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/531 (22%), Positives = 197/531 (37%), Gaps = 69/531 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++L  ++W  A  + G      F   ILP   L+RL    +     + + Y   G     
Sbjct: 5   STLETWLWDAACAIRGPVDAPKFKDYILPLIFLKRLSDVFDDEIKRLSDVYGNCGLVLHL 64

Query: 69  LESFVKVAGY----SFYNTSEYSLSTLGSTNTR---NNLESYIAS---FSDNAKAIFEDF 118
           LE   +  G      FY         +     R     L   +      +   + +    
Sbjct: 65  LEQ-ERERGQVHLVRFYIPENARWKAIRQRGVRTLGQFLTDAVRDVARENPALQGVINMV 123

Query: 119 DFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF++T    R+     L K+    S   L    V   ++   YE+L+R+F     + A +
Sbjct: 124 DFNATTAGQRIIPDDHLSKLIDVLSRHRLGLQDVEPDILGRAYEYLLRKFAEGQGQSAGE 183

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  L   LL           P    T+YDPTCG+GG L      + +       
Sbjct: 184 FYTPGEVAILMAQLL----------DPQPRMTVYDPTCGSGGLLIKCHLRLLETHGVRSG 233

Query: 237 PPILV---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                           GQE+ P T A+     +I  LE+D        I+ G T+    F
Sbjct: 234 RKFSTATPGVAPLRLFGQEINPATFAMARMNAVIHDLEAD--------IRIGDTMRHPAF 285

Query: 288 TG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  + F    +NP + +K+  +       ++N    RF  G+P  S     +L H+
Sbjct: 286 VDAAGRLQTFDRVTANPMWNQKFPVET------YENDPYERFTLGIPPHSSADWGWLQHM 339

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFF 399
              L       G+ A+VL +  +  G    G   E +IR+  +E DLIEA++ LP +LF+
Sbjct: 340 LASLHER----GKMAVVLDTGAVSRGSGNQGSNRERDIRKAFVERDLIEAVILLPENLFY 395

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T     + +++ RK    RG++ LINA+  +      G+ +  + ++   +I DIY   
Sbjct: 396 NTTAPGIILVVNRRKAR--RGEILLINASQQFAK----GRPKNYLTEEHIARIADIYHQW 449

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             G      +  +  +  I      R  + L  +    +        L   
Sbjct: 450 RVGA-----NNHSPLHTIITTDEAARNDYNLSPSRYVSVNGKEDVLPLEEA 495


>gi|49257053|dbj|BAD24842.1| HsdM protein [Staphylococcus aureus]
          Length = 504

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 106/539 (19%), Positives = 197/539 (36%), Gaps = 62/539 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G     ++  V L    L+ +  + E     +            + +   
Sbjct: 9   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL-----KLDPYADEEDQDE 63

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126
            +A   F+   E     +     R  +   I          +++ K +         + +
Sbjct: 64  YLAENIFWVPKEARWQYINDNAKRPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L
Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V     H      +  +GQE
Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF     
Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +       +  +  R+  G+P   + +  ++ H+ +KL       G A  VL++  + 
Sbjct: 280 GQE-------RLLDDYRWQFGIPPTGNANYAWIEHMISKLAP----NGIAGFVLANGSMS 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422
                  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ERR ++
Sbjct: 329 TSNKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTPIPVCLWFISNNKGQNGKKERRNEI 386

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VL 481
             I+A ++   I    K     +D+  +++   Y + +        D    G+ ++  + 
Sbjct: 387 LFIDAREIGHMISRTLK---EFSDEDIQEVAQTYHAWKGTNDKSYEDIA--GFCKVANLE 441

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 +IL       L       +     +     I   + +Q       E  +++S+
Sbjct: 442 EVKNNEYILTPGRYVDLAD---IEEDEEPFEQKMERITSELSEQFAKSKKLEDQIRKSL 497


>gi|89075002|ref|ZP_01161447.1| type I restriction-modification system, M subunit [Photobacterium
           sp. SKA34]
 gi|89049241|gb|EAR54805.1| type I restriction-modification system, M subunit [Photobacterium
           sp. SKA34]
          Length = 521

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/542 (18%), Positives = 190/542 (35%), Gaps = 60/542 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63
           +   +   +W   +   G    + +   +L    L+ +    +     +  ++    A  
Sbjct: 23  NQDEINKTVWSACDTFRGTVDPSIYKDFVLTMLFLKYISDVRQDKVEELTAQFGDNQAMI 82

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-- 121
            + +  +SF    G +F++  E+       +     L +         K +F+D  F+  
Sbjct: 83  EAMLASQSFKIPTGSTFWDLYEHRFEAGNGSRIDQALHAIEEENGTKLKGVFQDISFNTD 142

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 +K  +L  + ++F    L+          V+ N YE LI+ F +   + A +F 
Sbjct: 143 KLGDEKQKNDILRHLLEDFGKPTLNLRPSRVGSLDVIGNAYEFLIKHFAASSGKSAGEFY 202

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L + +L           P     + DP CG+G  L      +     +     
Sbjct: 203 TPPEVSDLLSIIL----------EPQQGDEICDPACGSGSLLMKCGKQIQ---KNFGGSK 249

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFH 293
                GQE    T ++    M +   +       +  I+ G T+              F 
Sbjct: 250 QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKLQDANGGLLHFD 302

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPF       +D      ++   GRF  G+P  + G   F+ H+   L+      
Sbjct: 303 VVTANPPFSLDKWGHED-----AESDHFGRFRRGIPPKTKGDYAFISHMIETLKPET--- 354

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR  +V+    LF     S E +IR+ L++ +L++ ++ LP  LFF T I   + +    
Sbjct: 355 GRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFGTGIPAAILLFKKH 411

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           KT+    KV  I+A+  +      GK +  +  D  ++I+D Y +R+N      L     
Sbjct: 412 KTD---NKVLFIDASREF----KSGKNQNALTSDNIQKIVDTYKARKNVDKYAYLA---- 460

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
                 +       + L+         +     L  +         +         G+ E
Sbjct: 461 -----TLEEIAENDYNLNIPRYVDTFEEEAEIDLMAVRSERLALKTELADLDAEMAGYLE 515

Query: 534 SF 535
             
Sbjct: 516 EL 517


>gi|163743541|ref|ZP_02150918.1| type I restriction system adenine methylase [Phaeobacter
           gallaeciensis 2.10]
 gi|161383126|gb|EDQ07518.1| type I restriction system adenine methylase [Phaeobacter
           gallaeciensis 2.10]
          Length = 520

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/474 (21%), Positives = 186/474 (39%), Gaps = 60/474 (12%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M   +  A    A  ++K A+ + G  + +++  V L    L+ +  A +     +    
Sbjct: 1   MANTSRQADLDFAADLFKAADKMRGGLEPSEYKHVALGLIFLKYISEAFQAMHDQL---- 56

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------SDN 110
            A        +    +A   F+       S +       N+   I            ++ 
Sbjct: 57  -AKDDFADPEDPEEYLAENIFWVPETARWSFIQDNARSENIGKIIDDAMEAIEAEPTNET 115

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSE 169
            K +        T+ +     +L ++   FS +++H        ++  +YE+ I  F S 
Sbjct: 116 LKGVLPKNYARPTLDK----TMLGELVDLFSNVKMHDSADRARDLLGRVYEYFISGFASA 171

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TPR VV     +L                 +YDP CG+GG    +   + D
Sbjct: 172 EGKRGGEFFTPRSVVRTLVEML-----------EPYQGRVYDPCCGSGGMFIQSEKFIED 220

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G +   P  L  +GQE+   T  +    + +  +++D   D +       +  KD   G
Sbjct: 221 HGGN---PLNLSVYGQEINHTTWRLAKMNLAVHGIDADIAWDSAG------SFHKDAHPG 271

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  Y L+NPPF       +       +  E  R+  G P   + +  ++ H+ + L   
Sbjct: 272 LKADYILANPPFNISDWGGE-------RLLEDDRWQYGPPPKGNANFAWIQHIIHHLAPR 324

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A +VL++  +      SGE EIR+ L+E D ++ +VALP  LF+ T I   LWI
Sbjct: 325 ----GHAGVVLANGSM--SSQTSGEGEIRKRLIEEDRVDCMVALPGQLFYSTQIPVCLWI 378

Query: 410 LSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           LS  K+     +RRG+V  I+A ++   +      RR  +D+   +I   Y   
Sbjct: 379 LSRDKSANGLRDRRGEVLFIDARNMGHMVDRV---RREFSDEDIERIAGTYRRW 429


>gi|242279139|ref|YP_002991268.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242122033|gb|ACS79729.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 856

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/499 (22%), Positives = 203/499 (40%), Gaps = 68/499 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   + +SL   ++K  + L G+ + +++ + I     L+RL       R A+  + L
Sbjct: 1   MTQK-LTLSSLERKLFKACDILRGNMEASEYKEYIFGMLFLKRLSDQFHKDR-AILAQDL 58

Query: 61  AFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLG------STNTRNNLESYIASFSDNAK 112
           A  G           K   Y+FY         +        +     L +   +  +  +
Sbjct: 59  AAKGIPEEAKAALLDKRNQYTFYVPESARWEQIQHIKKDVGSGLNKALAAIEEANPETLQ 118

Query: 113 AIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSE 169
            + +  +F+  +    L+ +  L +  ++F+ I L  D       +   YE LI+ F   
Sbjct: 119 DVLKSINFNRKVGQRTLDDS-TLVEFIQHFNDIPLSNDDFEFPDLLGAAYEFLIKHFADS 177

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP +VV     ++           P     +YDPT G+GG L  +  +V +
Sbjct: 178 AGKKGGEFYTPTEVVRTLVEII----------EPQEGMGIYDPTAGSGGMLIQSAKYVQE 227

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---- 285
           CG + K    L   GQEL   T ++C   M++  +       +S++I+Q   L +     
Sbjct: 228 CGGNVK---NLSLAGQELAGSTWSMCKMNMILHGI-------VSQDIRQEDVLKRPLHLK 277

Query: 286 --------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSM 336
                       K +   ++NPPF + + K +   +         RF   LP       +
Sbjct: 278 KDPDQNNQNHELKTWDRVIANPPFSQNYSKKEMLFKD--------RFDVWLPTTGKKADL 329

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +F+ H+   L+      G+ A+++    LF G     E   R   +E  ++EAIV LP+ 
Sbjct: 330 MFVQHMVAVLK----NNGKCAVIMPHGVLFRGGE---ERNCREKFIEKGILEAIVGLPSG 382

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T I   + +L+     +R+ +V  INA   +     EGK +  +  +   +I  +Y
Sbjct: 383 LFYGTGIPACILVLNKEGAADRK-EVLFINADREY----KEGKNQNKLRPEDIAKITHVY 437

Query: 457 VSREN-GKFSRMLDYRTFG 474
            +R    K+SRM+  +   
Sbjct: 438 RNRLEVDKYSRMVPVQELE 456


>gi|254372672|ref|ZP_04988161.1| hypothetical protein FTCG_00237 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570399|gb|EDN36053.1| hypothetical protein FTCG_00237 [Francisella novicida GA99-3549]
          Length = 495

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/530 (20%), Positives = 202/530 (38%), Gaps = 73/530 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +W   +   G      +   IL    ++ L    +  +  + ++Y      
Sbjct: 4   TTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSQRYNG---- 59

Query: 66  NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFE 116
             D +   +  +   F      +   L +   + NL   I +  D  +         IF 
Sbjct: 60  --DEKMIERALSREKFRLDDSCTFDYLYANRDKENLGEIINAALDRIEEDNPQKLTGIFR 117

Query: 117 DFDFSS---TIARLEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEV 170
             DF+         ++  +L  + K+F+  +L         + V+ + YE+LI  F S+ 
Sbjct: 118 GVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLDLSPSKLEGNDVIGDSYEYLIANFASDS 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+   +              YDPTCG+G  L  A   +   
Sbjct: 178 GKKGGEFFTPSQVSSLLAMLVQAKEGDEI----------YDPTCGSGSLLIKAAKEIGSN 227

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
                       +GQE    TH++C   M +  +          NIQ G T+        
Sbjct: 228 N--------FAIYGQERNSTTHSLCRMNMFLHDIN-------DANIQLGDTIRNPRILEN 272

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K+F   ++NPPF             +  +    RF  G+P  S G   F+ H+   L
Sbjct: 273 DKLKKFDVVVANPPFSLD-----KWGADDLTSDVYSRFEFGIPPKSKGDYAFIQHMLASL 327

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  GR A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I   
Sbjct: 328 NES----GRMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPAC 380

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +   +K       V  I+A++ +      GK +  + DD  ++I D Y SRE+  K+S
Sbjct: 381 IMVFKKQKDS---NDVLFIDASNEFEK----GKNQNKLTDDNIKKIFDTYKSRESLEKYS 433

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +            +  P    ++        ++ ++T + ++ L     
Sbjct: 434 HVASLEEIKENDYNLNIP---RYVDTFEEEESVDIEVTKQAIAELEAKRE 480


>gi|91217919|ref|ZP_01254872.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
 gi|91183896|gb|EAS70286.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
          Length = 505

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 103/546 (18%), Positives = 207/546 (37%), Gaps = 57/546 (10%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+     +   +   +W   +   G    +++   IL F  ++ L    +   +A++E+Y
Sbjct: 1   MSNKIKPTQDQINAALWNACDTFRGAVDSSEYKNYILVFMFIKYLSDVWKDHYNALKEQY 60

Query: 60  ---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                     +  E FV     SF    E+   T               S  +    +F 
Sbjct: 61  GDDEELIQRKLKRERFVLPDKCSFDYIYEHRNDTDIGEKIDKIFAQIEESNLEKLDGVFR 120

Query: 117 DFDFS--STIARLEKAGLLYKICKNFS--GIELHPDTVP--DRVMSNIYEHLIRRFGSEV 170
           +  F+        ++   L  +  +F+   ++  P        ++   Y +L+ +F S  
Sbjct: 121 NISFNSDKLGQTKDRNRRLKNLINDFAKPELDFRPSLWEGKQDILGEAYMYLLEKFASGA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP++V  L   L+          SP     ++DPTCG+G  L        D 
Sbjct: 181 GKKGGEFFTPKEVSGLLAKLV----------SPKEGDRIFDPTCGSGSLLIKVAEETKDA 230

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
             +         +GQE   +T A+      +  ++       S  I+   T++       
Sbjct: 231 KGN--TTNNFAIYGQESNGDTWALSKMNCFLHTMD-------SAQIEWCDTINNPKLKEG 281

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +F   ++NPPF       ++A    +K     RF  G+P  S G   F++H+    
Sbjct: 282 DALMKFDIVVANPPFSLDKWGHENAEADRYK-----RFLRGVPPKSKGDYAFILHMI--- 333

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G+  +++    LF G   S E +IR+ L+E +L+EA++ LPT+LF+ T I   
Sbjct: 334 -ETTLPTGKVGVIVPHGVLFRG---SAEQKIRQKLIEENLLEAVIGLPTNLFYGTGIPAA 389

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           + I +  KT E    +  ++A+  +      GKK+ ++      +I+  Y   +  + +S
Sbjct: 390 ILIFNKAKTTE---DILFMDASKEFDD----GKKQNVLRTQDINKIVTTYKDFKTIEKYS 442

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            ++           +  P  +    ++  +   E      KL    ++  +++   M + 
Sbjct: 443 SVVKPAEVAENDFNLNIPRYVDTFEEEEPVDIAEVQQNIEKL----EAELVEVRSEMKKH 498

Query: 526 IYPYGW 531
           +   G+
Sbjct: 499 LKELGY 504


>gi|294339001|emb|CAZ87346.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
 gi|294341828|emb|CAZ90257.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
          Length = 521

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 106/540 (19%), Positives = 198/540 (36%), Gaps = 63/540 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-----FG 63
             L   +W  A+ L       ++  ++L    ++ +  A +  R  ++ ++       + 
Sbjct: 3   QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKTQFNDPASDLYL 62

Query: 64  GSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
               D  + ++   Y      F+        TL +     ++          I + +   
Sbjct: 63  PDAADQAAALEERDYYTMANVFWVPEVARWETLRAQAKLWDIGIRIDQALDAIEADNPRL 122

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I +     + +      G + ++    S I     T    V+  +YE+ + +F S   
Sbjct: 123 KGILDKRYGRAQLE----PGKMGELVDLVSTIGFGTGTQAKDVLGEVYEYFLGQFASAEG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L                 +YDP CG+GG    +   +   G
Sbjct: 179 KKGGQFYTPASVVKVLVEVLAPHQG-----------KVYDPCCGSGGMFVQSEKFIESHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE  P T  +    + IR ++ +  ++ +       T  +D     +
Sbjct: 228 GR---FGDISIYGQEANPTTWRLVAMNLAIRGMDFNLGKEPA------DTFHRDQHPDLK 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF               +  +  R+  G P  S+ +  +L H+   L    N
Sbjct: 279 ADYVLANPPFNISDWGGD-------RLLDDKRWLYGTPNPSNANYAWLQHILWHL----N 327

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A +VL++  +      + E  IR+ ++E D++E +VALP  LFF T I   LW L+
Sbjct: 328 ANGQAGVVLANGSM--SSNQNNEGTIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFLT 385

Query: 412 NRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRM 467
             KT    +RRG+V  I+A  L           R+ +D+   +I       R++G+    
Sbjct: 386 KSKTAHGRDRRGEVLFIDARKLGRMETRV---NRVFDDEDVARIAGTVHRWRQDGEAGAQ 442

Query: 468 LDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             Y    G+ R +K+        +L        EA     +           +L   M +
Sbjct: 443 EPYADVPGFCRAVKLAEIAEHGHVLTPGRYVGAEAVDDDDEAFNEKMERLTTLLAEQMAK 502


>gi|146295059|ref|YP_001185483.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566749|gb|ABP77684.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 499

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 120/547 (21%), Positives = 212/547 (38%), Gaps = 66/547 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +       +     G   
Sbjct: 5   NIKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYD---EEFIDAMEQVGDEE 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
           +          +      E     + +   +    L+     I   +     IF D  ++
Sbjct: 62  LAKGDMF----HRIQIPQECHWKDVFAETKDIGQALKDAFRGIELANPKLHGIFGDASWT 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR
Sbjct: 118 NK-ERLSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPR 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L           P    ++YDP CGTGG L + ++HV + G   ++     
Sbjct: 176 TIVRLMVNIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
             GQE    T A+    + +   E         +I +G TL +  F      + F   ++
Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLVSDRLETFDCVIA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K                 GR   GL   ++G   ++ H+   L       GR A
Sbjct: 276 NPPFSLKEWGY-----DLWSADPYGRKQYGLAPKTNGDFAWVQHMFASLNEQ----GRMA 326

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G A   E  IR  LL+ + IEAI+ + ++LF+ T I   + +L   +  +
Sbjct: 327 VVLPHGVLFRGGA---EGAIRTKLLQENRIEAIIGVASNLFYGTGIPACILVLRKSRPAD 383

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
            +  V +INA +++T     G+ +  +++DQ   I +IY  +E           T G + 
Sbjct: 384 HQDHVLIINAEEIFTK----GRAQNTLSNDQADDIFNIYRQQE-----------TLGPKA 428

Query: 478 IKVLRPLRMSFILD-KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            ++    R   + + +     L      +K          + LK   Q++     AE+ +
Sbjct: 429 EEIEGVARWVALTEIEENDFNLNIARYVQKPLEEETITVEEALKDFQQKLAALEQAENEL 488

Query: 537 KESIKSN 543
           +  +   
Sbjct: 489 EALLVKE 495


>gi|85716902|ref|ZP_01047867.1| type I restriction system adenine methylase [Nitrobacter sp.
           Nb-311A]
 gi|85696282|gb|EAQ34175.1| type I restriction system adenine methylase [Nitrobacter sp.
           Nb-311A]
          Length = 513

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 117/555 (21%), Positives = 214/555 (38%), Gaps = 78/555 (14%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT  +     LA    ++K A+ L G+ + +++  V L    L+ +  A E  R  VR  
Sbjct: 1   MTTASNGNGDLAFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEAQR--VRLT 58

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------SD 109
              +  +    E     A + F+   E   S L +   R  +   I            ++
Sbjct: 59  TDQYADAEDPEEYL---AEHVFWVPKEARWSYLQANAKRPEIGKLIDEAMEAIEKAPSNE 115

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
             K +        T+ +     +L ++   FS I +H  T     ++  +YE+ +  F  
Sbjct: 116 GLKGVLPKNYARPTLNK----TMLGELIDLFSNIGMHDSTDKAKDLLGRVYEYFLSGFAG 171

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TPR VV     +L                 +YDP CG+GG    +   + 
Sbjct: 172 SEGKRGGEFFTPRSVVRTLVEML-----------EPYQGRVYDPCCGSGGMFVQSEKFIE 220

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDL 286
           + G        +  +GQE+   T  +    + ++ +++D        I+  +  +  +D 
Sbjct: 221 EHGGRRDA---IAVYGQEINHTTWRLAKMNLAVQGIDAD--------IRWNNEGSFHRDE 269

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           F   +  + L+NPPF       +       +  E  R+  G P  S+ +  +L H+ + L
Sbjct: 270 FADLKADFILANPPFNISDWGGE-------RLSEDQRWKYGTPPKSNANFAWLQHILHHL 322

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G A +VL++  +      SGE +IR+ ++E D+++A+VALP  LFF T I   
Sbjct: 323 APR----GTAGVVLANGSM--SSQQSGEGDIRKAMIEADVVDAMVALPGQLFFSTQIPAC 376

Query: 407 LWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           LW+L+  K      +RRG++  I+A  L   +      RR  + +   +I D Y      
Sbjct: 377 LWVLARDKGANGHRDRRGEILFIDARKLGFMVDRV---RREFSAEDISRIADAYHRWRGK 433

Query: 463 KFSRMLDYRTFGYRRIK----------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
             +        G+ +            VL P R     D      +     +  L    Q
Sbjct: 434 DHADAYA-DEPGFCKSATLAEVREHGHVLTPGRYVGAADAED-DGVPFAEKFEALREQLQ 491

Query: 513 SFWLDILKPMMQQIY 527
           + + D  + + ++I 
Sbjct: 492 ARF-DEGRALEERIA 505


>gi|25026813|ref|NP_736867.1| putative restriction enzyme subunit M [Corynebacterium efficiens
           YS-314]
 gi|259506125|ref|ZP_05749027.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
 gi|23492092|dbj|BAC17067.1| putative restriction enzyme subunit M [Corynebacterium efficiens
           YS-314]
 gi|259166299|gb|EEW50853.1| type I restriction-modification system, M subunit [Corynebacterium
           efficiens YS-314]
          Length = 800

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 174/475 (36%), Gaps = 55/475 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   ++  A+ L G  + + + + I     L+      E  +  V  +  + G S 
Sbjct: 5   TLPQLERHLFAAADVLRGSMEASAYKEYIFGMLFLKYASDQFEAEQQQVIAEQRSRGRSQ 64

Query: 67  IDLESFVKVAGY--SFYNTSEYSLSTLGS---TNTRNNLESYIASF---SDNAKAIFEDF 118
            + E   +   +  +FY         +      +  + L   +      + +   + +  
Sbjct: 65  AEAEQRAESPSFYRAFYVPQRARWDQIRDHLHKSVGSGLNKALEELEHSNRSLDGVLQHI 124

Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAED 176
           DF+  I +   +   L ++  +F+ + L          +   YE+LIR F     +   +
Sbjct: 125 DFNRKIGQSSMSDKKLRELIMHFNKVPLRQQDFEFPDLLGAAYEYLIRDFADSAGKKGGE 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TPRDVV L   +            P    ++YDP  G+GG L  +  +V + G   + 
Sbjct: 185 FYTPRDVVRLMVQI----------ADPRPGMSVYDPCTGSGGMLILSKEYVEESGGDGR- 233

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRF 292
              L   GQE +    A+    ML+  +     R+         TL           +RF
Sbjct: 234 --NLALAGQEKDGSVWAISKMNMLLHGIPDADLRNNDDG-----TLEDPAHIAGGELQRF 286

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLANKLELPP 350
              ++NPPF   +  D              RF  G          ++F+ H+        
Sbjct: 287 DRVITNPPFSMNYSADAIP--------FSERFRYGYTPEKGKKADLMFVQHMLAVTRP-- 336

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG    V+    LF G     E +IR   L +DL+EA++ L   LF+ T I   + +L
Sbjct: 337 --GGLVTTVMPHGVLFRGG---DEGKIRTGFLNDDLLEAVIGLGPQLFYGTGIPACILVL 391

Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                K + R  KV  INA   +     EG+ +  +  +   +I+  Y + E+  
Sbjct: 392 RPLGSKPQHREDKVLFINADRDY----REGRAQNYLEPEHIEKIVSAYRAFEDVP 442


>gi|297587128|ref|ZP_06945773.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
 gi|297575109|gb|EFH93828.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
          Length = 500

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 197/532 (37%), Gaps = 58/532 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   TG+       I++ A+ L G+    ++  V+L    L+ +  + E   + + E+  
Sbjct: 1   MDNITGANLGFEKEIFQAADKLRGNIDAAEYKNVVLGLIFLKYISDSFEQKYNQLLEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113
              G   + +    +A   F+         + S      +          I   +D  + 
Sbjct: 59  ---GDGFEEDRDEYIAENVFFVPKTARWEYVASKAMTAEIGKIIDEAMVAIEQENDRLRG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L ++   F+ ++L        ++   YE+ I +F S   + 
Sbjct: 116 ILPKNYARPELDK----RRLGEVVDLFNNLKLKEHGNSKDILGRTYEYTIAQFASLEGKN 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  +V     +L                 +YDP CG GG    +   V +    
Sbjct: 172 AGEFYTPTSIVKTLVEIL-----------EPYEGRVYDPCCGAGGMFVQSAKFVENHQGR 220

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + I  LE D     +       T  KD  +  +  
Sbjct: 221 INE---ISIYGQEYNTNTWKLAQMNLAIHGLEGDLGHGAA------DTFFKDQHSSLKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF  K            K  E  R+  G P   + +  ++ H+   L+      
Sbjct: 272 FILANPPFNLKEWGGD-------KLSEDSRWKYGTPPQGNANYAWMQHMIYHLDDNT--- 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L    A   E EIR  ++++DL+E I+A+P  LF+ T I+  LWIL+  
Sbjct: 322 GKMGLVLANGSL---SASGKEGEIRENIIKDDLVECIIAMPDRLFYSTGISVSLWILNKN 378

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K +  + K   ++  +L   I       R ++++   +I   Y +  NGK    L Y   
Sbjct: 379 KQQ--KNKTLFLDCRNLGHMIDRA---HRDLSEEDIAKITTTYKNFVNGKDIEELGYAHA 433

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            Y   ++   L   F+L       LE      +          + LK + ++
Sbjct: 434 AYMD-EIETNL---FVLTPGRYVGLEEMDDDGEDFEDKMQRLTEELKDLFEE 481


>gi|328675904|gb|AEB28579.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida 3523]
          Length = 495

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 114/540 (21%), Positives = 207/540 (38%), Gaps = 75/540 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +W   +   G      +   IL    ++ L    +  +  + E+Y      
Sbjct: 4   TTQKEINQIVWNACDTFRGTLNPDGYKDYILSMLFVKYLSDFYKEKKEQLSERYNG---- 59

Query: 66  NIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFE 116
             D +   +  +   F      +   L +   + NL   I +  D  +         IF 
Sbjct: 60  --DEKRIERALSREKFTLDDSCTFDYLYANKDKENLGEIINAALDRIEEDNPQKLTGIFR 117

Query: 117 DFDFSS---TIARLEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEV 170
             DF+         ++  +L  + K+F+  +L+        + V+ + YE+LI  F S+ 
Sbjct: 118 GVDFNDAKSLGDTKDRNSILKNLLKDFNNPKLNLSPSKLEGNDVIGDSYEYLIANFASDS 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  V  L   L+   +              YDPTCG+G  L  A   +   
Sbjct: 178 GKKGGEFFTPSQVSSLLAMLVQAKEGDEI----------YDPTCGSGSLLIKAAKEIGSN 227

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
                       +GQE    TH++C   M +  +          NIQ G T+        
Sbjct: 228 N--------FAIYGQERNSTTHSLCRMNMFLHDIN-------DANIQLGDTIRNPRILEN 272

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K+F   ++NPPF             +  +    RF  G+P  S G   F+ H+   L
Sbjct: 273 DKLKKFDVVVANPPFSLD-----KWGADDVTSDVYSRFEFGIPPKSKGDYAFIQHMLASL 327

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  GR A+V+    LF G A   E +IR+ +++N+L++A++ LP++LFF T+I   
Sbjct: 328 NES----GRMAVVVPHGVLFRGAA---EGKIRKQIIDNNLLDAVIGLPSNLFFGTSIPAC 380

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +   +K       V  I+A++ +      GK +  + DD  ++I D Y SRE+  K+S
Sbjct: 381 IMVFKKQKDS---NDVLFIDASNEFEK----GKNQNKLTDDNIKKIFDTYKSRESLEKYS 433

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +            +  P    ++        ++ + T + ++ L      + LK  M +
Sbjct: 434 HVAKLDEIKENDYNLNIP---RYVDTFEEEEPVDIEATKQTIAELEAK--REALKTKMAE 488


>gi|313112144|ref|ZP_07797925.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa
           39016]
 gi|310884427|gb|EFQ43021.1| hypothetical protein PA39016_004130023 [Pseudomonas aeruginosa
           39016]
          Length = 507

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 114/550 (20%), Positives = 202/550 (36%), Gaps = 62/550 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   +   +   +W   +   G      +   IL    L+ +    +    + R +Y 
Sbjct: 1   MSDK-VNQDDINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYDSYRMEYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113
                    +  E FV     SFY   +              L S   +     K     
Sbjct: 60  DEPELIEEMLKNERFVLPRNASFYALYDRRYEPGNGERIDQALHSIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168
           +F+D  F+        +K  +L  + ++F+  EL           V+ N YE+LI+ F +
Sbjct: 120 VFQDISFNTDKLGEEKQKNTILRHLLEDFAREELDLKPSRVGSLDVIGNAYEYLIKNFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L   LL           P    ++ DP CG+   L      V 
Sbjct: 180 SGGQKAGEFYTPPEVSELIAELL----------DPQPGDSICDPACGSASLLMKCGRKVR 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +             +GQE    T ++    M +   +       +  I+ G TL      
Sbjct: 230 EHH----NSKQYALYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTLRNPKLL 278

Query: 289 GK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  +F    +NPPF             E ++ + GRF  G+P  + G   F++H+ 
Sbjct: 279 DTNGQLLKFDIVTANPPFSLD-----KWGHDEAEHDQFGRFKRGIPPKTKGDFAFILHMI 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GR A+++    LF G   S E +IR+ L+E +L++A++ LP  LF+ T I
Sbjct: 334 ETLKAKT---GRMAVIVPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPEKLFYGTGI 387

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + + S  KT+E    V  I+A+  +      GK + ++ ++Q   IL  Y  R N  
Sbjct: 388 PAAILVFSKAKTDE---NVLFIDASRDF----KSGKNQNVLGEEQINNILLTYRHRINSD 440

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            +S     +        +  P R     ++     L   +  RK     ++   ++   M
Sbjct: 441 KYSHRASLQEIRDNDYNLNIP-RYVDTFEEEKEVNL---MAVRKERAQLKAKLAELEIAM 496

Query: 523 MQQIYPYGWA 532
              +   G+ 
Sbjct: 497 DTYLRELGYD 506


>gi|229002235|dbj|BAH57701.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 507

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 105/539 (19%), Positives = 195/539 (36%), Gaps = 62/539 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G     ++  V L    L+ +  + E     +  K   +       E   
Sbjct: 12  KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQDEYL- 68

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126
             A   F+   E     +     +  +   I          +++ K +         + +
Sbjct: 69  --AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK 126

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L
Sbjct: 127 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 182

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V     H      +  +GQE
Sbjct: 183 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 228

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF     
Sbjct: 229 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 282

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +       +  +  R+  G+P   + +  ++ H+ +KL       G A  VL++  + 
Sbjct: 283 GQE-------RLLDDYRWQFGIPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 331

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422
                  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ER  ++
Sbjct: 332 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEI 389

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VL 481
             I+A ++   +    K     +D+  +++   Y +          D    G+ ++  + 
Sbjct: 390 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHAWRGTNDKPYEDIA--GFCKVANLE 444

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 +IL       L       +     +     I   + +Q       E  +++S+
Sbjct: 445 EVKNNEYILTPGRYVGLAD---VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL 500


>gi|257465468|ref|ZP_05629839.1| type I restriction-modification system, M subunit [Actinobacillus
           minor 202]
 gi|257451128|gb|EEV25171.1| type I restriction-modification system, M subunit [Actinobacillus
           minor 202]
          Length = 503

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 174/484 (35%), Gaps = 56/484 (11%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--- 60
            + +   +   +W   +   G      +   IL    L+ +    +      + +Y    
Sbjct: 1   MSINQDDINKALWSACDTFRGTISPDTYKDFILTMLFLKYISDVWQDHYQQYQAEYGDVP 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116
                 +  E FV     +FY   E              L +   +     K     +F+
Sbjct: 61  ELIEEMMKQERFVLPPHANFYRLYEQRFEAGNGERIDQALHAIEEANGTKLKDAGKSVFQ 120

Query: 117 DFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171
           D  F+        +K  +L ++ ++F+  EL           ++ N YE+LI+ F +   
Sbjct: 121 DISFNTDKLGEEKQKNTILRELLEDFAKPELDLKPSKVGTLDIIGNAYEYLIKNFAASGG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP +V  L   LL           P M  ++ DP CG+G  L      V    
Sbjct: 181 QKAGEFYTPPEVSDLIAELL----------DPQMGDSICDPACGSGSLLMKCGQKVVKNH 230

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
                      +GQE    T ++    M +   +       +  I+ G T+         
Sbjct: 231 QS----KNYALYGQEAIGSTWSLAKMNMFLHSED-------NHRIEWGDTIRNPKLLDSN 279

Query: 291 ----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                F    +NPPF             E       RF  GLP  + G   F+ H+   L
Sbjct: 280 GELITFDIVTANPPFSLD-----KWGYDEVSQDRFQRFEHGLPPKTKGDYAFISHMIKTL 334

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      GR  +V+    LF G A   E +IR+ L++ +L++A++ LP  LF+ T I   
Sbjct: 335 KEKT---GRMGVVVPHGVLFRGAA---EGKIRQKLIDENLLDAVIGLPEKLFYGTGIPAA 388

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + I    KT+     V  I+A++ +      GK +  +  +   +I+  Y +R+  +   
Sbjct: 389 ILIFRKNKTD---DTVLFIDASNEF----KPGKNQNTLTVENIEKIVRTYRTRQAVEKYA 441

Query: 467 MLDY 470
            +  
Sbjct: 442 FVAT 445


>gi|238768521|dbj|BAH66833.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 504

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 105/539 (19%), Positives = 195/539 (36%), Gaps = 62/539 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G     ++  V L    L+ +  + E     +  K   +       E   
Sbjct: 9   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYEEL--KQDPYADEEDQDEYL- 65

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIAR 126
             A   F+   E     +     +  +   I          +++ K +         + +
Sbjct: 66  --AENIFWVPKEARWQYINDNAKKPEIGQIIDKAMIAIENENESLKGVLPKEYARPALDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L
Sbjct: 124 ----EKLGDIIDLFTFKVGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V     H      +  +GQE
Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF     
Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +       +  +  R+  G+P   + +  ++ H+ +KL       G A  VL++  + 
Sbjct: 280 GQE-------RLLDDYRWQFGIPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422
                  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ER  ++
Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERENEI 386

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VL 481
             I+A ++   +    K     +D+  +++   Y +          D    G+ ++  + 
Sbjct: 387 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHAWRGTNDKPYEDIA--GFCKVANLE 441

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                 +IL       L       +     +     I   + +Q       E  +++S+
Sbjct: 442 EVKNNEYILTPGRYVGLAD---VEEDEEPFEQKMERITSELSEQFAKSKELEDQIRKSL 497


>gi|297545264|ref|YP_003677566.1| adenine-specific DNA-methyltransferase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843039|gb|ADH61555.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 514

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 209/563 (37%), Gaps = 73/563 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +      + A+ +W  A+ L  + + +++  ++L    L+ +  A +  +  +     
Sbjct: 1   MGQNNDGVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRKEELEYLIK 60

Query: 61  AFGGSN-----------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                            I  +    +A   FY   E     + +   R+++   I     
Sbjct: 61  DPKSEEYYCETNEEAQLILEDKDEYMAANVFYVPPEARYEYIMANARRSDIGKLID---- 116

Query: 110 NAKAIFEDFD---FSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           NA  + E  +       + ++          L +I      I          V+  +YE+
Sbjct: 117 NAMDLIEKENPKQLRGVLPKVYTRAPLDPHTLGEIVTLIGSINFG-KNEELDVLGRVYEY 175

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +  F  +  +   +F TP  VV L   ++             +   ++DP CG+GG   
Sbjct: 176 FLSEFARKEGKRGGEFFTPSTVVKLLVEMI-----------QPLHGRVFDPCCGSGGMFV 224

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            ++  V            +  +GQE  P T+ +C   + IR +E+D        I+ G++
Sbjct: 225 QSIRFVEAH---AGKKGDISIYGQESNPTTYRLCKMNLAIRGIEAD--------IRLGNS 273

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            + D F   R  Y L+NPPF               +     R+  GLP  S+ +  ++ H
Sbjct: 274 FTDDQFKDLRADYILANPPFNDSAWGAD-------RLANDVRWKYGLPPDSNANYAWIQH 326

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       G A  VL++  +      + E EIR+ ++E++L++ +VALP  LF+ T
Sbjct: 327 FIYHLAPK----GVAGFVLANGSMTTSN--NAEYEIRKRIIEDNLVDCMVALPPQLFYTT 380

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   LW +   +  +   +   I+A  +   +       R + D++ ++I   Y +  N
Sbjct: 381 GIPACLWFIRKGRETK---ETLFIDARKIGVMVDRT---HRELTDEEIQKIAQTYHNWRN 434

Query: 462 GKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                 +     G+   + +    +  ++L       +E     R+     +    ++ +
Sbjct: 435 KNGYEDV----KGFCASVPMEVIAQNDYVLAPGRYVGVEDT---REDDIPFEEKMAELTE 487

Query: 521 PMMQQIYPYGWAESFVKESIKSN 543
            + QQ+      +  +K +++  
Sbjct: 488 KLYQQMKEAKRLDEVIKANLEEL 510


>gi|312136020|ref|YP_004003358.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor owensensis OL]
 gi|311776071|gb|ADQ05558.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Caldicellulosiruptor owensensis OL]
          Length = 514

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 102/562 (18%), Positives = 214/562 (38%), Gaps = 71/562 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR---- 56
           M +      + A+ +W  A+ L  + + +++  ++L    L+ +  A +  +  +     
Sbjct: 1   MGQNNDGVLNFASTLWAAADRLRNNMEPSEYKHIVLGLIFLKYISDAFKFRQEELEYLIK 60

Query: 57  ----EKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
               E+Y          I  +    +A   FY   E     + +   R+++   I     
Sbjct: 61  DPKNEEYYCGSEEEAQLILEDKDEYMAANVFYVPPEARYEYIMANARRSDIGKLID---- 116

Query: 110 NAKAIFEDFD---FSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +A  + E  +       + ++          L +I      I          V+  +YE+
Sbjct: 117 DAMDLIEKENPKQLRGVLPKVYTKAPLDPHTLGEIVNLIGSINFG-KNEELDVLGRVYEY 175

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +  F  +  +   +F TP  VV L   ++             +   ++DP CG+GG   
Sbjct: 176 FLSEFARKEGKRGGEFFTPSSVVKLLVEMI-----------QPLHGRVFDPCCGSGGMFV 224

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            ++  V            +  +GQE  P T+ +C   + IR +E+D        I+ G++
Sbjct: 225 QSIRFVEAH---AGKKGDISIYGQESNPTTYRLCKMNLAIRGIEAD--------IRLGNS 273

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            + D F   R  Y L+NPPF               +     R+  GLP  S+ +  ++ H
Sbjct: 274 FTDDQFKDLRADYILANPPFNDSAWGAD-------RLANDVRWKYGLPPDSNANYAWIQH 326

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       G A  VL++  +      + E EIR+ ++E++L++ +VALP  LF+ T
Sbjct: 327 FIYHLAPK----GVAGFVLANGSMTTSN--NAEYEIRKRIIEDNLVDCMVALPPQLFYTT 380

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   LW +   +  +   +   I+A  +   +       R + D++ ++I + Y +  N
Sbjct: 381 GIPACLWFIRKGRETK---ETLFIDARKMGVMVDRT---HRELTDEEIQKIAETYHNWRN 434

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
              S   D + F    + +    +  ++L       +E     ++     +    ++ + 
Sbjct: 435 K--SGYEDLKGFC-ASVPMEVIAQNDYVLAPGRYVGVEDT---QEDDIPFEEKMAELTEK 488

Query: 522 MMQQIYPYGWAESFVKESIKSN 543
           + QQ+      +  +K +++  
Sbjct: 489 LYQQMKEARRLDEIIKANLEEL 510


>gi|302528797|ref|ZP_07281139.1| type I restriction-modification system, M subunit [Streptomyces sp.
           AA4]
 gi|302437692|gb|EFL09508.1| type I restriction-modification system, M subunit [Streptomyces sp.
           AA4]
          Length = 541

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 99/483 (20%), Positives = 172/483 (35%), Gaps = 70/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYL 60
            +   L + +WK A+ L G      +  VIL    L+ +  A +  R A+R     E Y 
Sbjct: 13  STMKELKDTLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAYDERREAIRADLTAEGYD 72

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---------TNTRNNLESYIASF---- 107
           A   +++  +         F          L           T    N+   I       
Sbjct: 73  AEQIADLIDDPEEYQGYGVFVVPPTAQWDYLAQYAKGKPAEGTEPAKNIGQLIDEAMDLV 132

Query: 108 ---SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
              +   +           I +      L ++   F+        +     +M  +YE+ 
Sbjct: 133 MKTNPALQGTLPRLYNKDNIDQ----RRLGELIDLFNSARFSRQGEHRARDLMGEVYEYF 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  F     +   +F TP  VV +   +L                 +YDP CG+GG    
Sbjct: 189 LGNFARSEGKRGGEFFTPPSVVRVIVEVL-----------EPSSGRVYDPCCGSGGMFVQ 237

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               + +       P  +   GQE   ET  +    + I  +E+          + G T 
Sbjct: 238 TEKFIYEHNGD---PKDVSIFGQESLEETWRMAKMNLAIHGIENKGLGA-----RWGDTF 289

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           ++D     +  Y ++NPPF  K+           +N E  R+  G+P  ++ +  ++ H+
Sbjct: 290 ARDQHADLQMDYVMANPPFNIKYWS---------RNTEDPRWKFGVPPATNANYAWIQHI 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
             KL    + G   A   + S   N     GE  IR  ++E DL+  +VALPT LF  T 
Sbjct: 341 LYKLAPGGSAGVVMA---NGSMSSNSN---GEGAIRAQIVEADLVSCMVALPTQLFRSTG 394

Query: 403 IATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           I   +W  +  K        +R G+V  I+A +L   +       R ++++   +I D Y
Sbjct: 395 IPVCVWFFAKDKRAGKHGAVDRSGQVLFIDARELGYMVDRAE---RTLSNEDIAKIADTY 451

Query: 457 VSR 459
            + 
Sbjct: 452 HAW 454


>gi|51893048|ref|YP_075739.1| type I restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856737|dbj|BAD40895.1| type I restriction-modification system DNA methylase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 537

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 103/539 (19%), Positives = 190/539 (35%), Gaps = 61/539 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA------F 62
             +   +W  A+ L       ++  ++L    L+ +  +    R  +R+           
Sbjct: 19  NEMKRTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDSFVAQRERLRKVLADPASDLYL 78

Query: 63  GGSNIDLESFVKVA----GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                   +  +         F+   +    T+ +   + ++ + I    +  +   E+ 
Sbjct: 79  DDPADREAALEEREYYTMDNVFWVPDQARWETIRAHAKQPDIGARIDQALEAIEE--ENP 136

Query: 119 DFSSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                + +       + G L ++    S I    +     V+  +YE+ + +F S   + 
Sbjct: 137 RLKGLLDKRYGRAHLEPGRLGELVDLISTIGFGEEHRARDVLGEVYEYFLGQFASAEGKK 196

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  VV L  A+L                 +YDP CG+GG    A   +   G  
Sbjct: 197 GGQFYTPASVVKLLVAILAPYKG-----------KVYDPCCGSGGMFVQAERFLESRGGR 245

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +GQE  P T  +    + IR L+ +  ++ +       T  ++     R  
Sbjct: 246 ---FGDLSIYGQEANPTTWRLVAMNLTIRGLDFNLGKEPA------DTFHRNQHPDLRAD 296

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF       +       +  +  R+  G P   + +  +L H+   L      G
Sbjct: 297 YILANPPFNMSDWGGE-------RLVDDPRWIYGTPPAGNANFAWLQHILWHLAPAGQAG 349

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
              A   + S        + E EIR+ ++E D++E +VALP  LFF T I   LW L   
Sbjct: 350 VVLA---NGSM---SSQQNNEGEIRKNMVEADVVEVMVALPPQLFFNTQIPACLWFLCKD 403

Query: 414 KTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV----SRENGKFSR 466
           KT+   +RRG+V  I+A  +           R+++D++  +I +        RE      
Sbjct: 404 KTKNGRDRRGEVLFIDARKMGRMETRV---NRVLDDEEIAKIANTVHLWRQDREAPPGQV 460

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             D   F  R +K+       ++L        E      +            L   M++
Sbjct: 461 YEDVPGFC-RAVKLEEIAANGYVLTPGRYVGAEEVEDDDETFAEKMERLTAELAEQMKK 518


>gi|148982142|ref|ZP_01816609.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
 gi|145960647|gb|EDK25994.1| Type I restriction enzyme M protein [Vibrionales bacterium SWAT-3]
          Length = 510

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 112/550 (20%), Positives = 203/550 (36%), Gaps = 61/550 (11%)

Query: 1   MTEFTGSAASLAN-----FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M     +   L        +W   +   G    + +   IL    L+ +    +     +
Sbjct: 1   MPHTKINQDPLYQEQVNKAVWAACDTFRGTVDPSIYKDFILTMLFLKYISDVHQDKFDEL 60

Query: 56  REKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            +++        + +  +SF    G +F++  E        +     L +   +     K
Sbjct: 61  SKQFNGNEQMITAMMSKQSFKIPTGSTFWDLYESRHEAGNGSRIDQALHAIEEANGTKLK 120

Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNF--SGIELHPDTV-PDRVMSNIYEHLIRRFG 167
            +F+D  F+        +K  +L  + ++F    + L P  V    V+ N YE+LI+ F 
Sbjct: 121 NVFQDISFNTDKLGDEKQKNDILRHLLEDFGKDTLNLRPSRVGSLDVIGNAYEYLIKHFA 180

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   + A +F TP +V  L + +L           P    ++ DP CG+G  L      V
Sbjct: 181 AGSGKSAGEFYTPPEVSDLLSIIL----------EPQQGDSICDPACGSGSLLMKCGKQV 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +  S  K        GQE    T ++    M +   +       +  I+ G T+     
Sbjct: 231 QNNFSGSK---QYALFGQEAIGSTWSLAKMNMFLHGED-------NHRIEWGDTIRNPKL 280

Query: 288 TGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             K      F    +NPPF       +DA          GRF  G+P  + G   F+ H+
Sbjct: 281 QDKEGGLLHFDVVTANPPFSLDKWGFEDAGNDHF-----GRFRRGIPPKTKGDYAFISHM 335

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      GR  +V+    LF     S E +IR+ L++ +L++ ++ LP  LFF T 
Sbjct: 336 IETLKPES---GRMGVVVPHGVLFR---ASSEGKIRKQLIDENLLDTVIGLPEKLFFGTG 389

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I   + I   +K +    KV  I+A+  +      GK +  +  +  R+I+D Y +RE  
Sbjct: 390 IPAAILIFKKQKDD---NKVLFIDASREF----KSGKNQNQLTPENIRKIVDTYKARETT 442

Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
             +S +            +  P  +    ++  +       T R      Q+   D+   
Sbjct: 443 DKYSYLASLEEVAENDYNLNIPRYVDTFEEEEEIDLA----TVRNERLALQNKLADLEGE 498

Query: 522 MMQQIYPYGW 531
           M   +   G+
Sbjct: 499 MAGYLEELGY 508


>gi|296270473|ref|YP_003653105.1| site-specific DNA-methyltransferase [Thermobispora bispora DSM
           43833]
 gi|296093260|gb|ADG89212.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Thermobispora bispora DSM 43833]
          Length = 540

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 103/472 (21%), Positives = 175/472 (37%), Gaps = 57/472 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L + +WK A+ L G      +   +L    L+ +  A E  R A+RE+ L  G   
Sbjct: 19  TMADLRDTLWKAADKLRGSMDAAQYKDFVLGLVFLKYVSDAFEERREAIREEILEQGIPE 78

Query: 67  IDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             L+ F+           F+   E   S L +      +   I    D       +   +
Sbjct: 79  SRLDMFLDDKDEYIGHGVFWVPEEARWSHLAAHAKSEGIGELIDRAMDAIMK--SNQSLA 136

Query: 122 STIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + ++          L ++           H D     V+  +YE+ + +F     +  
Sbjct: 137 GVLPKIFNRDNVDQRRLGELVDLIGDARFTGHGDRPARDVLGEVYEYFLEKFARAEGKRG 196

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  VV L   +L                 +YDP CG+GG    A   V       
Sbjct: 197 GEFYTPASVVKLLVEVL-----------EPYAGRVYDPCCGSGGMFVQAEKFVIAHRG-I 244

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +    +  +GQE    T  +    + I  +  +         +   T  +D     +  +
Sbjct: 245 QHKDDIAVYGQESNERTWRLAKMNLAIHGISGNLGP------RWADTFREDKHPDLKADF 298

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF               +  +  R+  G P  ++ +  +L H+ +KL       G
Sbjct: 299 VLANPPFNMS---------DWSRQVDDPRWRFGTPPANNANFAWLQHIISKLAER----G 345

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A +VL++  +      SGE EIR  ++E DL+  +VALP  LF  T I   LW     K
Sbjct: 346 TAGVVLANGSM--SSKQSGEGEIRAAIVEADLVSCMVALPPQLFRTTQIPACLWFFDKDK 403

Query: 415 T-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +        +RRG+V  I+A ++ T +       R++  D   +I D Y + 
Sbjct: 404 SPQGAKRLADRRGEVLFIDARNMGTMVDRTE---RVLTADDIARIADTYHAW 452


>gi|126434842|ref|YP_001070533.1| N-6 DNA methylase [Mycobacterium sp. JLS]
 gi|126234642|gb|ABN98042.1| N-6 DNA methylase [Mycobacterium sp. JLS]
          Length = 316

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 111/296 (37%), Positives = 160/296 (54%), Gaps = 15/296 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           AN IWK AE L G ++   +G VILPFT+LRRL+C LEPT+  V  +Y     + +D   
Sbjct: 6   ANLIWKIAELLRGPYQPNQYGDVILPFTILRRLDCILEPTKDEVLAEYAKISATKVDPAV 65

Query: 72  FVKVA-GYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            +K      FYNTS ++ + L        +NL  YI  FS N + +F+ F     IA L 
Sbjct: 66  MLKAKFKLPFYNTSRWTFAALVGDPEGVADNLIDYIERFSPNVRDVFDGFKMVDLIADLA 125

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K+  LY I K F+ ++LHP+ V +  M  I+E LIR+F    +  A D  TPR+V+ L  
Sbjct: 126 KSDRLYLIVKEFAAVDLHPNVVTNHDMGYIFEELIRKFAESNNAQAGDHFTPREVIALMV 185

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L    D      PG +RT+YDP  GTGG L+ A +H+ +     +     V +GQ++ 
Sbjct: 186 DILFHAQDDALT-KPGTVRTIYDPAAGTGGMLSTAHDHLIEMNPKAR----PVLYGQDIN 240

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           P ++A+C + M+++  + D       NI  G TL+ D F  K F + LSNPPF K 
Sbjct: 241 PRSYAMCKSDMIVKGQDVD-------NIYLGDTLTDDGFRTKTFDFLLSNPPFRKM 289


>gi|118580277|ref|YP_901527.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
 gi|118502987|gb|ABK99469.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
          Length = 540

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 179/476 (37%), Gaps = 62/476 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGG 64
            L   +W  A+ L  +    ++  ++L    ++ +    +   S +RE++       +  
Sbjct: 4   ELIKTLWATADKLRANMDAAEYKHIVLGLIFVKYISDTFQTRSSELRERFGNPDDEYYIQ 63

Query: 65  SNIDLESFVKVAG-------YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN 110
              D     ++          +F+         + +   + ++          I + +  
Sbjct: 64  DADDETLVCELEDRDYYREVNTFWVPEAARWENIRAQAKQPDIGKRIDDALTLIEAENPK 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169
            K I +       +      G L ++    S I           ++  +YE+ + +F S 
Sbjct: 124 LKGILDKRYARVQLPD----GKLGELVDMVSTIGFGVTGESARDILGQVYEYFLGQFASA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    F TP  +V    A+L                 +YDP CG+GG    +   +  
Sbjct: 180 EGKRGGQFYTPASIVRTLVAILAPHHG-----------QVYDPCCGSGGMFVQSEKFIEA 228

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            G        +  +GQE  P T  +    + IR ++ +  ++ +       T  ++    
Sbjct: 229 HGGRIG---DVSIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA------DTFVRNQHPD 279

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            R  + L+NPPF                     R+  G P   + +  +L H+   L+  
Sbjct: 280 LRADFVLANPPFNVS-------DWWHPSLEGDPRWEYGTPPQGNANYAWLQHMLYHLKPT 332

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GRA IVL++  + +    + E EIRR L+E D +E +VA+P  LFF T I   LW 
Sbjct: 333 ----GRAGIVLANGSMSSS--QNSEGEIRRALVEADKVEVMVAMPGQLFFNTQIPACLWF 386

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKF 464
           L+ +K+   +G+V  I+A  L T I      +   +D+  ++I D   +   +G+ 
Sbjct: 387 LAKQKSVR-QGEVLFIDARKLGTMISRV---QIEFSDEDIQRIADTVHAWRGDGEI 438


>gi|70725065|ref|YP_251979.1| type I restriction-modification system DNA methylase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68445789|dbj|BAE03373.1| type I restriction-modification system DNA methylase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 504

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 190/532 (35%), Gaps = 63/532 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G     ++  V L    L+ +  + E     +  K   +       E   
Sbjct: 9   KLWQAADKLRGSMDAAEYKNVALGLIFLKYVSDSFEEKYKEL--KQDPYADEEDQDEYL- 65

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIAR 126
             A   F+   E     +     +  +          I   +++ K +         + +
Sbjct: 66  --AENIFWVPKEARWQYINDNAKKPEIGQLIDKAMIAIEKENESLKGVLPKEYARPALDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +YE+ I +F S   + A +F TP  +V L
Sbjct: 124 ----EKLGDIIDLFTFKLGDTESRKQDVLGRVYEYFIAKFASAEGKNAGEFYTPSSIVKL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    +   V     H      +  +GQE
Sbjct: 180 LVEMI-----------EPYKGRIYDPCCGSGGMFVQSERFVE---KHQGRLDDIAIYGQE 225

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    + IR +++D         +   T   DL  G +  Y L+NPPF     
Sbjct: 226 SNPTTWKLAKMNLAIRGIDNDLGE------RNADTFHNDLHKGLKADYILANPPFNASDW 279

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             +       +  +  R+  G+P   + +  ++ H+ +KL       G A  VL++  + 
Sbjct: 280 GQE-------RLLDDYRWQFGVPPKGNANYAWIEHMISKLAP----NGTAGFVLANGSMS 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK----TEERRGKV 422
                  E EIR+ L+E DL+E IV LP  LF+ T I   LW +SN K     +ER+ ++
Sbjct: 329 TSGKD--ELEIRKNLIEQDLVECIVTLPGQLFYSTQIPVCLWFISNNKGQNGKKERKNEI 386

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTFGYRRIK- 479
             I+A ++   +    K     +D+  +++   Y S    N K+   +     G+ ++  
Sbjct: 387 LFIDAREIGHMVSRTLK---EFSDEDIQKVAQTYHSWRGTNDKYYEDIA----GFCKVVN 439

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           +       +IL       L       +            L     +      
Sbjct: 440 LEEVKNNEYILTPGRYVGLADVEEDEEPFEQKMKRITSELSEQFAKSKELED 491


>gi|258517330|ref|YP_003193552.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781035|gb|ACV64929.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 527

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 181/495 (36%), Gaps = 72/495 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   +   IW+ A    G     ++   ILP   ++ L  +       + +KY    
Sbjct: 1   MATTRKDIEAAIWRGANTFRGAIDAANYKDYILPMLFVKYLSDSYLEKVEKLEQKY---- 56

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IF 115
             N  + +   +    F    ++  S L      +NL   I       +         +F
Sbjct: 57  --NDPVRAERAINRLPFAIKEKHRFSWLYQNRYNDNLGELINIALRGIEDDNPSLFTGVF 114

Query: 116 EDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHLIRR 165
            + DF+S        +K   L ++ ++F  ++L P  +           + + YE++I  
Sbjct: 115 RNIDFNSEAMLGNHNQKNTRLRELLEDFEPLDLRPSAIEPEEGKVAADTIGDAYEYMIGE 174

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +  + A  F TP +V  L   ++          +P +  T+YDPTCG+G  L     
Sbjct: 175 FARQAGKKAGSFFTPSEVSELIARIV----------NPKISDTMYDPTCGSGSLLIRTGK 224

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                   +     L  +GQE+   + ++    M +  +       +   I  G +L+  
Sbjct: 225 --KAIEKENGNIKTLALYGQEMNGSSWSMAKMNMFLHEI-------MDARIAWGDSLANP 275

Query: 286 LFTG-----KRFHYCLSNPPFGKK-----------WEKDKDAVEKEHKNGELGRFGPGLP 329
           +         +F   ++N PF +                    + E    +  RF  G+P
Sbjct: 276 MHLDPDGNLMQFDVIVANMPFSQDKWAAGFNTGGEMTGKGKQFKMEASLDKFHRFDWGVP 335

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S G   FL+H+   L+     GGR A V     LF G     E  IR+ ++E +L++A
Sbjct: 336 PASKGDWAFLLHMIASLKS----GGRIAAVAPHGVLFRGA---SEGRIRQAVIERNLLDA 388

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKR-RIIND 446
           ++ LP +LF+ T I   + +         R  V  I+A+  D    +R    K    +  
Sbjct: 389 VIGLPANLFYGTGIPACILVFKKN---RNRNDVLFIDASGKDEKGHLRYRKDKNQNRLET 445

Query: 447 DQRRQILDIYVSREN 461
                I+  Y +R +
Sbjct: 446 KHIEDIVKAYETRSD 460


>gi|299065074|emb|CBJ36237.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum CMR15]
          Length = 536

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 192/492 (39%), Gaps = 71/492 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +  +L +++W++A  L G    +DF   I     L+R     E     V +      
Sbjct: 3   NKLTLDTLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEER---VSQLMANED 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-----IFEDF 118
            S  + ++ V     +F  T+ +   T  + N    L+          K      +    
Sbjct: 60  LSQAEADAEVCEDQGAFPPTARWGWLTTRTENIGEALDKAFHDIEAGVKGTDLQHVLTAT 119

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +     R+     L ++ ++F+  +L   D     ++ + YE+LI++F  +  +   +F
Sbjct: 120 QYGDK--RVLSDHTLQRLLRHFNQYKLGNADLYKADMLGDAYEYLIKQFADDAGKKGGEF 177

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ VV L   LL           P    ++YDPTCG+GG L ++ +H+A       + 
Sbjct: 178 YTPKGVVQLVVGLL----------DPQPGMSVYDPTCGSGGMLVESAHHIAGLPGGTLLG 227

Query: 238 PILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
                  +GQE    T A+    + +  + ++        I++G TL +         K 
Sbjct: 228 GKPNVLLYGQEKNLGTWAIAKLNLYLHNMRAE--------IERGDTLVEPKHLDGDYLKT 279

Query: 292 FHYCLSNPPFGKKWE-------------KDKDAVEKEHKN--GELGRFGPGLPKISDGSM 336
           F   ++NPPF  K                +K      +K      GRFG G P      +
Sbjct: 280 FDRVIANPPFSAKAWWAPLELAAEAEQEGEKKPKAPNYKQVSDPYGRFGYGFPPRGYADL 339

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------ENDL 386
            F  H+   L+      GR  ++L    LF       E +IR  LL            DL
Sbjct: 340 AFAQHMLASLKAD----GRMGVILPHGVLFRSGE---EGKIRDGLLFGTDAASGQQPGDL 392

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           IEAI+ LP+ LF+ T I   + +L+  K    +GKV +I+A+  +      GK + ++  
Sbjct: 393 IEAIIGLPSALFYNTGIPACVLVLNKNKPATLKGKVIIIDASRDYLE----GKAQNMLRP 448

Query: 447 DQRRQILDIYVS 458
               +I+  + +
Sbjct: 449 GDITRIVARHKA 460


>gi|229822392|ref|YP_002883918.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
 gi|229568305|gb|ACQ82156.1| N-6 DNA methylase [Beutenbergia cavernae DSM 12333]
          Length = 541

 Score =  319 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 172/484 (35%), Gaps = 71/484 (14%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +   L + +WK A+ L G    + +  VIL    L+ +  A +  R+ +  +  A G 
Sbjct: 15  ATTMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRAVIAAELAADGI 74

Query: 65  SNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLES----------------Y 103
                   ++          F+         L                            
Sbjct: 75  GEEQAGPLLEEVDEYRAAGVFWVPPRARWGYLAQHAKGRPAGDPEGQATIGELVDEAMVL 134

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEH 161
           I   +           F+           L ++   F+      D       V+  +YE+
Sbjct: 135 IMGTNPALATTLPQI-FNKEN---VDQRRLGELIDLFNSARFTGDGARKARDVLGEVYEY 190

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F +   +   +F TP                 L +        +YDP CG+GG   
Sbjct: 191 FLGKFAAAEGKRGGEFYTPP-----------GVVRVLVEVLEPYRGRVYDPCCGSGGMFV 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A   +   G     P  +  +GQEL   T  +    + +  L +          + G T
Sbjct: 240 QAEKFIERHGED---PQAISVYGQELNERTWRMAKMNLAVHGLTAQLGP------RWGDT 290

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            ++D+    +  + ++NPPF          ++   +N E  R+  G+P   + +  ++ H
Sbjct: 291 FARDVHPDVQMDFVMANPPFN---------IKDWARNAEDARWKFGVPPAGNANYAWIQH 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           + +KL      GG A +V+++  + +     GE EIR  L+E DL+  +VALPT LF  T
Sbjct: 342 ILSKLAP----GGSAGVVMANGSMSSNSV--GEGEIRAALVEVDLVSCMVALPTQLFRST 395

Query: 402 NIATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            I   +W  +  K        +R G+V  I+A +L   +       R ++D+   +I   
Sbjct: 396 GIPVCVWFFAKSKAAGASGSVDRTGQVLFIDARNLGHMVTRAE---RELSDEDIARIAGT 452

Query: 456 YVSR 459
           + + 
Sbjct: 453 FHAW 456


>gi|326201154|ref|ZP_08191026.1| type I restriction-modification system, M subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325988722|gb|EGD49546.1| type I restriction-modification system, M subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 507

 Score =  319 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 114/477 (23%), Positives = 200/477 (41%), Gaps = 52/477 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +   L   +WK A+ L G+     +   I     L+R+    +  R   ++++L
Sbjct: 1   MIMAKLTLQELEANLWKAADILRGELNAAQYKDYIFDLLFLKRMNDEFQTERETKKQEFL 60

Query: 61  AFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAK---- 112
             G    +++  ++      SF+         L   + N    L+    +  D  K    
Sbjct: 61  KQGMPAEEVDELLEDPQVYVSFFVPERARWDNLKNLNLNIGPELDKAFKAIEDEPKNVEL 120

Query: 113 -AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEV 170
             +    +F+    R+     L ++   F  ++L  D +    M  + Y++LI+ F  E 
Sbjct: 121 IGVLTTTNFNDK-ERVSDKK-LSQLLLLFDTMQLDADNLESSDMLGDAYQYLIKEFADEG 178

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                +F TP +VV +   +L           P     +YDPT G+GG L  ++ +V D 
Sbjct: 179 GAKGGEFYTPSEVVQVLVNIL----------KPQEGDRIYDPTVGSGGMLIKSIEYVRDH 228

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
           G +   P  L   GQE+   T A+C   M+    +         +I++G T+   +    
Sbjct: 229 GGN---PRNLSLFGQEINLSTWAICKMNMIFHNAKG-------ADIRKGDTIRNPMHLEG 278

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K F   L+NPPF  K    +     E       RF  G+P  S G + F+ H+   L
Sbjct: 279 GVLKTFDKVLANPPFSLKNWGHE-----EAMADPYHRFVYGVPPQSYGDLAFVSHMVASL 333

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G+   V+    LF   A   E +IR+   ++DLIEAIV LP++ F+  +I   
Sbjct: 334 ----NAKGKMGTVVPHGVLFRSGA---EGKIRKGFAKDDLIEAIVGLPSNCFYGASIPAA 386

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           L I++  K++ER+GK+  I+A+  +      G K R + D+  + I   + + ++ +
Sbjct: 387 LMIINKNKSKERKGKILFIDASQGFV---KNGNKNR-LRDEDIKAITQAFDAFDDQE 439


>gi|87309189|ref|ZP_01091326.1| putative type I restriction-modification system, M subunit
           [Blastopirellula marina DSM 3645]
 gi|87288180|gb|EAQ80077.1| putative type I restriction-modification system, M subunit
           [Blastopirellula marina DSM 3645]
          Length = 543

 Score =  319 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 189/478 (39%), Gaps = 59/478 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            + + +  S    +W  A+ L G  + +++  V+L    L+ +    +  R+A+  +  A
Sbjct: 20  NKESKAKKSFEQTLWDTADKLRGTVESSEYKHVVLSLIFLKFVSDRFQQRRAALIAEGKA 79

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
                ++           FY       ST+     + ++  +I S        + + K  
Sbjct: 80  DYVDMVE----FYTMQNVFYLPENSRWSTIVKQAKQADIAVHIDSALHAVEKNNPSLKGA 135

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS     + K   L     N S +        + ++  +YE+ + +F +   +G 
Sbjct: 136 LPDNYFSRMGIDVAKLAALIDSINNLSTVADQAAESEEDIVGRVYEYFLGKFAATEGKGG 195

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ VV+L   +L                 +YDP CG+GG    ++  +     + 
Sbjct: 196 GEFYTPKCVVNLLAEML-----------EPYSGKIYDPCCGSGGMFVQSVKFITSHHGNQ 244

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K    +  +GQE    T+ +    + IR +  +     +       T  KD     +  Y
Sbjct: 245 K---DISIYGQEQTSTTYKLAKMNLAIRGIAGNLGEVPA------DTFFKDQHPDLKADY 295

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353
            L+NPPF  K  +  D      +  +  R+ G  +P   + +  +++H+ +KL    +  
Sbjct: 296 ILANPPFNLKAWRGPD------ELTDDPRWSGYDVPPAGNANYGWILHMISKL----SEN 345

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  VL++  +      SGE  IR+ ++ENDL++ ++ALP  LF+ T I   LW L+  
Sbjct: 346 GVAGFVLANGSMSTS--TSGEGAIRQKIIENDLVDCMIALPGQLFYTTQIPVCLWFLTKS 403

Query: 414 KTE------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           K              +R G+   I+A +  T +    K    + +    +I   Y + 
Sbjct: 404 KQARKVQGHSELNQRKRSGETLFIDARNHGTMVDRTHK---ELTETDIAEITQTYHAW 458


>gi|269103361|ref|ZP_06156058.1| type I restriction-modification system M subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163259|gb|EEZ41755.1| type I restriction-modification system M subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 889

 Score =  319 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 190/473 (40%), Gaps = 56/473 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGS 65
           +   L++ ++K  + L G    +++ + I     L+R+     +  ++ + E        
Sbjct: 5   TLNKLSSKLFKACDILRGKMDASEYKEYIFGILFLKRMSDQFHKDYQAKISELKKEGHDD 64

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN-----AKAIFEDF 118
           +           + F+   +     L    TN  + L   + +  ++      + + +  
Sbjct: 65  DEIELLLEDEEQFDFFVPEKARWENLKHLKTNVGSGLNKALEALEESNTKKGLEGVLKHI 124

Query: 119 DFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAED 176
           +F+  + +       L +  ++F  I L          +   YE+LI+ F     +   +
Sbjct: 125 NFNRKVGKKPIPDERLVEFIQHFDSIPLSNSDFEFPDLLGAAYEYLIKYFADSAGKKGGE 184

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +VV L   +L           P     +YDPTCG+GG L  + N+V + G + K 
Sbjct: 185 FYTPAEVVRLLVEIL----------EPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKK 234

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKR 291
              +   GQE    T ++C   M++             +I+ G TL+  L        + 
Sbjct: 235 ---IHLFGQEDNGGTWSICKMNMILHG-------TGGADIENGDTLATPLHRTKDGEVRP 284

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPP 350
           F   ++NPPF + ++K    +++        RF   +P+      ++F+ H+   L+   
Sbjct: 285 FDRVIANPPFSQNYKKADMQLKE--------RFNTFMPESGKKADLMFVQHMVASLK--- 333

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA+V+    LF G     E   R+  +E  ++EA++ LP  LF+ T I   + +L
Sbjct: 334 -ANGKAAVVMPHGVLFRGAE---ERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVL 389

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +     ++R  V  INA   +     EGK +  +  +   +I  +Y      +
Sbjct: 390 NKA-GCKKRDSVLYINADREY----REGKNQNSLRPEDIEKITSVYKVMLEDE 437


>gi|239906157|ref|YP_002952896.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1]
 gi|239796021|dbj|BAH75010.1| type I restriction enzyme M protein [Desulfovibrio magneticus RS-1]
          Length = 531

 Score =  319 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 103/471 (21%), Positives = 193/471 (40%), Gaps = 59/471 (12%)

Query: 3   EFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           +  G+ A+L     ++K A+ L G+ + +D+  V L    L+ +  + E   +A+  +  
Sbjct: 23  KSNGTGANLGFEGELFKAADKLRGNMEPSDYKHVALGLIFLKHISDSFEAKHAALTAE-- 80

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113
                +   +    +A   F+   E   S L +   +  +          I + +++ K 
Sbjct: 81  ---DPSCAEDPDEYLAENIFWVPKEARWSHLQANAKQPGIGKIVDDALVAIEAKNESLKG 137

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIE-LHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +         + ++    +L ++    SGI           V+  +YE+ + +F     +
Sbjct: 138 VLPKDYARPALNKV----MLGELIDLISGIGLGTEQGQSRDVLGRVYEYFLSQFAGSEGK 193

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR VV +   +L                 +YDP CG+GG    +   VA+ G 
Sbjct: 194 RGGEFYTPRSVVRVLVDML-----------EPFKGRVYDPCCGSGGMFVQSNKFVAEHGG 242

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +GQE    T  +C   + +R ++SD R +         +  KD     R 
Sbjct: 243 RLG---DIAIYGQESNYTTWRLCKMNLAVRGIDSDIRWNSEG------SFHKDELKDLRA 293

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       +  E  R+  G+P   + +  +L H+ + L      
Sbjct: 294 DFILANPPFNISDWGGE-------RLREDVRWSFGIPPAGNANFAWLQHIFHHLGP---- 342

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A +VL++  + +    SGE +IR+ +LE D+++ ++ALP  LF+ T I   LW L+ 
Sbjct: 343 NGTAGVVLANGSMSSS--QSGEGDIRKAMLEADVVDCMIALPGQLFYSTQIPACLWFLAR 400

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            K      +RRG+V  I+A  L   +      RR  + +   +I   Y + 
Sbjct: 401 DKANHGFRDRRGEVLFIDARKLGHLVDRT---RREFSAEDIAKIAGTYHAW 448


>gi|326314830|ref|YP_004232502.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323371666|gb|ADX43935.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 540

 Score =  319 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 112/495 (22%), Positives = 191/495 (38%), Gaps = 74/495 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +  +L +++W++A  L G    +DF   I     L+R     E  R    ++     
Sbjct: 1   MSLTLDTLESWLWESANILRGSIDSSDFKNYIFGLLFLKRFNDVFEE-RVKQLQQVEGLS 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
             +  +E   K     F   + +S     + N    L+     I + +   + +     +
Sbjct: 60  LLDATVEVLDKWGD--FPPEARWSHLIARTENIGEALDKAFADIEANNTELQHVLTATQY 117

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                 L  A  L ++ ++F+   L   D     ++ + YE+LI++F  +  +   +F T
Sbjct: 118 GDK-RVLSDA-TLQRLLRHFNQYRLGNADLYKADMLGDAYEYLIKQFADDAGKKGGEFYT 175

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P+ VV L   L+           P    ++YDPTCG+GG L ++ +H+A          P
Sbjct: 176 PKAVVQLVVELI----------DPQPGHSVYDPTCGSGGMLVESAHHIAKLPKGTLLGQP 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
             + +GQE    T A+    + +  +           I +G TL +         K F  
Sbjct: 226 NALLYGQEKNLGTWAIAKLNLYLHNMR--------AQIDRGDTLVEPRHLEGGYLKTFDR 277

Query: 295 CLSNPPFGKKWE-------------------KDKDAVEKEHKN--GELGRFGPGLPKISD 333
            ++NPPF  K                      ++      +K      GRF  G+P    
Sbjct: 278 VIANPPFSAKAWWTPLELEAEAAQDSEGGADNNRKPKTPNYKTVSDPFGRFSYGVPPRGY 337

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------E 383
             + F  H+   L+      GR  I+L    LF G     E +IR  LL           
Sbjct: 338 ADLAFAQHMLASLKAD----GRMGIILPHGVLFRGGE---EGKIREGLLFGTDAASGGQP 390

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            DLIEAIV LP  LF+ T I   + +L+ RK    RGKV +I+A+  +      GK +  
Sbjct: 391 GDLIEAIVGLPPALFYNTGIPACVLVLNKRKPVGLRGKVIIIDASREYLE----GKAQNS 446

Query: 444 INDDQRRQILDIYVS 458
           +      +I+  + +
Sbjct: 447 LRPKDVERIVRTHKA 461


>gi|294101456|ref|YP_003553314.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261]
 gi|293616436|gb|ADE56590.1| N-6 DNA methylase [Aminobacterium colombiense DSM 12261]
          Length = 493

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 97/526 (18%), Positives = 191/526 (36%), Gaps = 61/526 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
              + +W+ A+ L G+ + +D+  V+L    L+ +  + E   + +  +         + 
Sbjct: 6   EFEDKLWEMADKLRGNIQPSDYKDVVLGLIFLKYISDSFEEKYNELVAE-----EEGFEE 60

Query: 70  ESFVKVAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSS 122
           +    VA   FY    + +         +     ++     I   + N K +        
Sbjct: 61  DRDAYVAENIFYVPPSARWDFIKKNAKQSTIGQIIDDAMITIERENRNLKGVLPKNYARP 120

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            + +      L ++   FS    + +     ++  +YE+ + +F         +F TP  
Sbjct: 121 ELDK----AKLGELVDLFSFNLGNKEAKAQDILGRVYEYFLGKF----GSSEGEFYTPPS 172

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   ++                 +YDP CG+GG    +   V +          +  
Sbjct: 173 IVKLLVGMI-----------EPYKGRVYDPCCGSGGMFVQSSRFVEEH---QGRKDDIHI 218

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE    T  +C   + IR ++ +         +   T   DL    R  Y L+NPPF 
Sbjct: 219 FGQEYTATTWRLCKMNLAIRGIDGNLGA------RDADTFGNDLHKNIRADYILANPPFN 272

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                            +  R+  G+P   + +  ++ H+ +KL       G A  VL++
Sbjct: 273 VS---------DYTLIPDDARWKYGIPPEKNANYAWIEHIISKLSPT----GVAGFVLAN 319

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             +        E+EIR+ ++E  L++ IV +P +LF+   I   LW +S  K E ++ K+
Sbjct: 320 GSMST--TTKAEAEIRKNIIEAGLVDCIVTMPPNLFYNVTIPVCLWFISK-KRENKQDKI 376

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
             I+A  + T +     K R  +D +  +I D Y +  + K     D + F  +   +  
Sbjct: 377 LFIDARKMGTMVTR---KHREFSDGEIAKIYDTYHNWRDNKK-EYKDIQGFC-KSADIEE 431

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                +IL       +E      +      +     L  M  + + 
Sbjct: 432 VREHEYILTPGRYVGIEEVEDDGEPFEEKMTRLTGELAEMFAKSHK 477


>gi|298292626|ref|YP_003694565.1| type I restriction-modification system, M subunit [Starkeya novella
           DSM 506]
 gi|296929137|gb|ADH89946.1| type I restriction-modification system, M subunit [Starkeya novella
           DSM 506]
          Length = 505

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 104/487 (21%), Positives = 184/487 (37%), Gaps = 57/487 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
               +   +   +W   +   G      +   IL    L+ +           R+++   
Sbjct: 2   NDHLTQQQVNQTVWAACDTFRGVVDAGQYKDYILVMLFLKYISDHWNDHLEIYRKQFGGD 61

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                  ++ E FV   G SFY+  E              LE    +     + +F + D
Sbjct: 62  ETRIRRRLERERFVLPEGASFYDLYEARNEPNIGELINIALERIEDANRTKLEGVFRNID 121

Query: 120 FSSTIAR---LEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F+S        ++   L  + ++F+   ++L P  V + ++   Y +LI RF S+  + A
Sbjct: 122 FNSEANLGRVKDRNRRLKNVLEDFAKPALDLRPSRVTEDIIGECYIYLISRFASDAGKKA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  V  L   L           +P    T+ DP CG+G  L  A   V       
Sbjct: 182 GEFYTPSAVSRLLAKL----------AAPKPGDTICDPACGSGSLLIRAAEEVGSEN--- 228

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
                   +GQE+   T A+    M +           +  I+   TL+           
Sbjct: 229 -----FALYGQEVNGATWALARMNMFLH-------AKDAARIEWCDTLNSPALVEGDHLM 276

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   ++NPPF       + A   + K     R+  G+P  S G   F+ H+    +   
Sbjct: 277 KFDVVVANPPFSLDKWGAESADTDQFK-----RYWRGIPPKSKGDYGFITHMIEIAKRLS 331

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR A+++    LF G A   E  IR+ L+E +L++A+V LP +LF  T I   + + 
Sbjct: 332 ---GRVAVIVPHGVLFRGGA---EGRIRQALIEENLLDAVVGLPANLFTTTGIPVAILVF 385

Query: 411 SNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
              + +    E R  V  I+A   +T     GK + ++++    ++L+ Y +R   + +S
Sbjct: 386 DRSREQGGVNEDRRDVLFIDAGKEFTP----GKTQNVMDEAHISKVLETYAARSEIEKYS 441

Query: 466 RMLDYRT 472
                  
Sbjct: 442 HRASPEE 448


>gi|169825074|ref|YP_001692685.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
 gi|167831879|dbj|BAG08795.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
          Length = 502

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 114/540 (21%), Positives = 208/540 (38%), Gaps = 60/540 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +       IW  A  LWG     ++ KVI+    LR +  A E     + E+  
Sbjct: 1   MAEKTNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISTAFEQRYKELVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKA 113
              G   + +         F+   E   ST+ +      + + I S        + N K 
Sbjct: 59  ---GDGFEDDRDAYTMENIFFVPKEARWSTIAAAAHSPEIGTVIDSAMRAIETENKNLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F + I++      + ++   YE+ I +F  +   
Sbjct: 116 VLPKNYGSPDLDK----KVLGDVVDIFTNNIDMSDTEASEDLLGRTYEYCIAQFAEKEGV 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP  VV    ++L           P     +YD  CG+GG    +   +   G+
Sbjct: 172 GGGEFYTPSSVVKTLVSIL----------KPFENCRVYDCCCGSGGMFVQSEKFLEAHGA 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +  +GQE  P+T  +    M IR +++D     +       T S DL    + 
Sbjct: 222 KRGA---ISVYGQEANPDTWKMAKMNMAIRGIDADFGPYNA------DTFSNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +          +  R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYHPWGQQA-------LQDDKRWKYGLPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE  IR+ ++E+DLIE IVA+PT LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALST--QTSGEGTIRKKIIEDDLIEGIVAMPTQLFYSVTIPVTLWFISK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K  +++GK   I+A  +   +     K R  +++  +++ D + + +NG          
Sbjct: 380 NK--KQKGKTLFIDARKMGHMVDR---KHRDFDEEDIQKLADTFTAFQNG-----TLEDV 429

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+  +  +    +  +IL       +E      +      +     L  M ++ +    
Sbjct: 430 KGFCAVASLEDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMARLTSELSDMFEKSHELED 489


>gi|124008339|ref|ZP_01693034.1| type I restriction-modification system M subunit [Microscilla
           marina ATCC 23134]
 gi|123986128|gb|EAY25964.1| type I restriction-modification system M subunit [Microscilla
           marina ATCC 23134]
          Length = 524

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 198/504 (39%), Gaps = 76/504 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++   +  +L  ++W +A+ L G    +DF   I     L+R     E   +   +K  
Sbjct: 1   MSK--LTLETLEGWLWDSADILRGSTDSSDFKNYIFGLLFLKRSNDVFEEEVAQKMDK-E 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLES---YIASFSDNAKAIF 115
           +    + + E +       F    E     L     N    L+     I   + + + + 
Sbjct: 58  SLSREDAEEEVY-------FKMPPEARWQYLIEQTENIGIALDKAFGAIERENQSLEGVM 110

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               F      +    +L ++ ++F+   L   D     ++ + YE+LI++F  +  +  
Sbjct: 111 TAIKFGDK--EVLSNEVLQRLLRHFNKHSLQNKDLESGDLLGDAYEYLIKQFADDAGKKG 168

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR VV+L   L+           P     +YDPTCG+GG L ++  +VA+     
Sbjct: 169 GEFYTPRGVVNLIVRLI----------KPQPGHRVYDPTCGSGGMLIESARYVANQPEGI 218

Query: 235 K-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-- 291
           K     +   GQE    T A+    M++   E       S ++Q+G TL+       +  
Sbjct: 219 KGGVVDIALFGQEKNLSTWAIGKLNMILHNFE-------SADLQKGDTLTNPRHADAQKG 271

Query: 292 ---FHYCLSNPPFGKKWE------------------------KDKDAVEKEHKNGELGRF 324
              F   ++NPPF                             K K     +  +   GR 
Sbjct: 272 LQVFDRVIANPPFSMNGWWTPAENAAEEENNDQDRTPDAKKKKKKTPNYAKEVSDPFGRL 331

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G+P      + FL H+   L       G+A +VL    LF G     E +IR+ LL+ 
Sbjct: 332 VYGVPPRGYADLAFLQHMLASLRQD----GKAGVVLPHGTLFRGG---SEGKIRQALLQA 384

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E IV LP+ LF+ T I   +W+L+  K   ++G+V ++ A+  +      GKK+  +
Sbjct: 385 DLVEGIVGLPSALFYNTGIPAAIWLLNKDKNPAQKGRVAIVEASRDYQE----GKKQNQL 440

Query: 445 NDDQRRQILDIYVSRENGKFSRML 468
            D    +I+  Y    +      +
Sbjct: 441 LDTHIDKIVKAYEVLADVDKYMRV 464


>gi|59713720|ref|YP_206495.1| type I restriction-modification system methylation subunit [Vibrio
           fischeri ES114]
 gi|59481968|gb|AAW87607.1| type I restriction-modification system methylation subunit [Vibrio
           fischeri ES114]
          Length = 488

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 113/492 (22%), Positives = 198/492 (40%), Gaps = 55/492 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L  ++W  A  L G     D+ + I P    +R+    +        +      S+
Sbjct: 3   TQQELEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRICDVYDEEFENALAE------SD 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDN-AKAIFEDFDF 120
            DLE       + F        + +  T T       N    I   + +  + IF D  +
Sbjct: 57  GDLEYAAFAENHHFQVPKGAHWNDVRETTTNIGLALQNAMRAIEKANPDTLEGIFGDASW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL  A +L  + +++S   L+   VPD  + N YE+LI+ F  +    A +F T 
Sbjct: 117 TNK-ERLSDA-MLTNLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L T ++          +P    ++YDPTCG+GG L +   H+ D G  ++     
Sbjct: 175 RTVVKLMTMIM----------APQPGESVYDPTCGSGGLLLNCALHLKDEGKEYRTLK-- 222

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE+   T A+    M +  +E         +I +G+TLS          K+F+  L
Sbjct: 223 -LYGQEINLLTSAIARMNMFMHGIE-------EFDIVRGNTLSNPGLLENDELKKFNVIL 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K         K  ++   GR   G P        F  H+    +    G GR+
Sbjct: 275 ANPPYSIKSWD-----RKAFESDPYGRNVWGTPPQGCADYAFQQHIQ---KSLDLGNGRS 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             +     LF       E+ +RR ++E D +E ++ L  +LF+ + +   L I    K E
Sbjct: 327 ISLWPHGILFR----DAETAMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIE 382

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475
            ++ K+  INA       +N G     ++     +I + Y   E    F+ ++D +    
Sbjct: 383 SKKDKILFINAVKEVRQDKNIG----YLDQVHIDKIFNAYNKFENEDSFAVLVDKQEVLD 438

Query: 476 RRIKVLRPLRMS 487
           ++  +   L + 
Sbjct: 439 KKANMAINLYIR 450


>gi|146295062|ref|YP_001185486.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566752|gb|ABP77687.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 505

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/531 (22%), Positives = 208/531 (39%), Gaps = 54/531 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + I P    +RL        +   E +       
Sbjct: 5   NKKKLEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEALEIHEG----- 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       + F    E     +   S N    +++    I + +     +F D  ++
Sbjct: 60  -DAEYAAMPMFHRFDIPKEARWEKVRHTSKNIGEAIQNALRLIEANNPRLHGVFGDAQWT 118

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 119 NK-ERLPDH-LLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 176

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPP 238
            VVHL T ++                T YDPTCGTGG L +A+  +   G      +   
Sbjct: 177 TVVHLMTRIMGL----------KPGETAYDPTCGTGGMLLNAVMDLRTHGEPSADQQQWR 226

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294
            +  +GQE+   T A+    M +  +E         ++ +G TL+   F      K+F  
Sbjct: 227 TVHLYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLADPKFIENDQLKQFDV 279

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             +NPP+  K          +      GR   G+P        F  H+   L+      G
Sbjct: 280 IFANPPYSIK-----KWNRDKFAADPYGRNLYGVPPQGCADYAFYTHIIKSLKPDT---G 331

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K
Sbjct: 332 RAAMLWPHGVLFR----DSEQSIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNK 387

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473
             ER+ KV  IN  +  T  R        ++D+    + + Y + E     + ++D  T 
Sbjct: 388 PAERKNKVLFINGVEHVTRERA----HSRLSDEDLAVLCEAYFAPEKQSDITALVDIDTL 443

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                 +  PL +    +        A  +W+      +     + K + +
Sbjct: 444 KENLYNLSIPLYVQAQNNGEVHDIEHAIESWKVSRVQLKKQTNKLFKSLKE 494


>gi|114330559|ref|YP_746781.1| N-6 DNA methylase [Nitrosomonas eutropha C91]
 gi|114307573|gb|ABI58816.1| N-6 DNA methylase [Nitrosomonas eutropha C91]
          Length = 542

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 193/490 (39%), Gaps = 73/490 (14%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           +    +   L     ++K A+ L G+ + +D+  V L    L+ +  A E   +      
Sbjct: 4   SNNNKTTDHLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHAE--LAA 61

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112
            +   +    E     A   F+   E   S L +   R  + + I          +++ K
Sbjct: 62  ESAAAAEDKDEYL---ADNIFWVPKEGRWSHLKANAKRPEIGTLIDDAMRAIEKDNESLK 118

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         + ++    +L ++    SGI ++        V+  +YE+ + +F     
Sbjct: 119 GVLPKDYARPALNKV----MLGELIDLISGIAMNEGGDKSKDVLGRVYEYFLSQFAGAEG 174

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TPR VV +   +L                 +YDP CG+GG    +   V + G
Sbjct: 175 KRGGEFYTPRSVVQVLVQML-----------EPYAGRVYDPCCGSGGMFVQSEKFVLEHG 223

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTG 289
                   +  +GQE    T  +    + +R ++SD        I+  +  +  KD    
Sbjct: 224 GRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRD 272

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            RF + L+NPPF               +  E  R+  G+P + + +  +L H+   L   
Sbjct: 273 LRFDHILANPPFNISDWGGD-------RLREDPRWQFGVPPVGNANYAWLQHIHWHLAPF 325

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A +VL++  +      SGE EIR+ ++E D ++ +V LP  LF+ T I   LW 
Sbjct: 326 ----GTAGVVLANGSM--SSNQSGEGEIRKAMVEADAVDCMVTLPGQLFYSTQIPACLWF 379

Query: 410 LSNRKT--------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           L+  K+               +RRG+V  I+A ++ T +      RR + D+  ++I D 
Sbjct: 380 LARDKSNGKRGSLSKGGETLRDRRGEVLFIDARNMGTLVDRT---RRELTDEDIQKIADT 436

Query: 456 YVSRENGKFS 465
           Y +    K +
Sbjct: 437 YHAWRGEKVA 446


>gi|198283096|ref|YP_002219417.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666139|ref|YP_002425314.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247617|gb|ACH83210.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518352|gb|ACK78938.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 520

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 125/551 (22%), Positives = 216/551 (39%), Gaps = 58/551 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M    G   SL ++IW  A  + G      +   ILP    +RL    +   + +  +  
Sbjct: 1   MANNNGKDKSLESWIWDAACSIRGAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLES---YIASFSD 109
           +   +    ++  K+    FY            +S+    S      + S    IA  + 
Sbjct: 61  SRKKAFQLAKADHKLV--RFYLPLVPDDPEQPVWSVIRKLSDWIGEGVTSHMRAIARENP 118

Query: 110 NAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             + I +  DF++T    R      L  + +  S   L  + V   ++   YE+LIR+F 
Sbjct: 119 LLQGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFA 178

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               + A +F TP +V  + + +L           P     +YDPTCG+GG L      +
Sbjct: 179 EGGGQSAGEFYTPPEVGTIMSRVL----------QPEPGMEIYDPTCGSGGLLVKCEIAM 228

Query: 228 ADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            +     K         GQE  PET A+    M+I  +E          I+ G T     
Sbjct: 229 EETAKGKKRTVAPLKLFGQEFTPETWAMANMNMIIHDMEG--------QIEIGDTFKNPK 280

Query: 287 F----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLM 340
           F      + F   ++NP + + W       E ++ N EL RF  G G P  S     ++ 
Sbjct: 281 FRSKGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKSSADWGWVQ 335

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDL 397
           H+   +    N  GRAA+VL +     G   +G   E  +R+W +++DLIE+++ LP +L
Sbjct: 336 HIHASM----NATGRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPENL 391

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T     +  L+  K  ER+GKV L+NA+ ++      G  +  I +   ++I D  +
Sbjct: 392 FYNTTAPGIVLFLNKAKAHERKGKVFLVNASQVFEK----GDPKNFIPEAGIQRIADTLI 447

Query: 458 SRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
                +  SR++D+         +  P R     D      +   +   +          
Sbjct: 448 GWVEAEKLSRIVDHAELKKNDYNI-SPSRYIHTSDAETYRPIAEIVEELEAIEAEAKETD 506

Query: 517 DILKPMMQQIY 527
             L  +++Q+ 
Sbjct: 507 QALDRILKQLG 517


>gi|255322118|ref|ZP_05363265.1| type I restriction-modification system, M subunit [Campylobacter
           showae RM3277]
 gi|255300816|gb|EET80086.1| type I restriction-modification system, M subunit [Campylobacter
           showae RM3277]
          Length = 496

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 109/529 (20%), Positives = 200/529 (37%), Gaps = 72/529 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +  ++ N +WK  +   G    +D+   +L    ++ L    +     +R +Y      
Sbjct: 4   TTQETINNVVWKACDTFRGTMDGSDYKDYVLTMLFVKYLSDFYKEKLEQLRAEYGDKTER 63

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFED 117
                   K+    F      +   L +     NL   +    +  +         IF  
Sbjct: 64  IEA-----KLKKEKFKLDESCTFEYLLAHKEAVNLGEIMNKTLEKIEEDNKDKLEGIFRS 118

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSG--IELHPDTVP-DRVMSNIYEHLIRRFGSEVS 171
            DF++        E+  +L  + ++F+   ++L P  +  + ++ + YE+LI  F S+  
Sbjct: 119 IDFNNKNKLGDTKERNAILQNLLEDFNDSRLDLRPSMLEGNDIIGDAYEYLIAHFASDAG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +V  L   L+           P     +YDPTCG+G  L  A   V    
Sbjct: 179 KKGGEFYTPSEVSTLLAKLV----------EPKDGDMIYDPTCGSGSLLIKASKEVGSKN 228

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
                      +GQE   +THA+C   M +  +           I+ G T+   L     
Sbjct: 229 --------FRLYGQEKNGQTHALCKMNMFLHEINDAV-------IEWGDTIRNPLHLHDN 273

Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
             K F   ++NPPF                N    RF    LP  S G   F++H+   L
Sbjct: 274 LIKTFDIVVANPPFSLD-----KWGADFAGNDPFMRFSSYALPPKSKGDYAFVVHMIKSL 328

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               N  G+  +VL    LF G   S E +IR+ L+E +L++A++ LP +LF+ T+I   
Sbjct: 329 ----NKNGKMGVVLPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPANLFYGTSIPAC 381

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           + +    ++ E    V  I+A+  +      GK +  +      +I+ +Y +R   + +S
Sbjct: 382 ILVFKKNRSNE---DVLFIDASKEFEK----GKNQNSLTAQNIDKIVSVYKNRSEIEKYS 434

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            +            +  P    ++        ++ + T  ++S L    
Sbjct: 435 HLASLSEIKENDYNLNIP---RYVDTFEEEEAVDIEATKAEISRLEAEL 480


>gi|197247972|ref|YP_002149445.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211675|gb|ACH49072.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 499

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 111/461 (24%), Positives = 186/461 (40%), Gaps = 54/461 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +       E++     S 
Sbjct: 5   NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYD-------EEFADAMESV 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       +            + +   +    L+     I   +     IF D  ++
Sbjct: 58  GDAELAKGKMFHRIQIPENCHWRDVFAETKDIGQALKDSFRGIELANPKLHGIFGDASWT 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR
Sbjct: 118 NK-ERLSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPR 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L           P    ++YDP CGTGG L + ++HV + G   ++     
Sbjct: 176 TIVRLMVNIL----------DPKAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
             GQE    T A+    + +   E         +I +G TL +  F      + F   ++
Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLQSDRLETFDCVVA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K             N   GR   GL   ++G   ++ H+   L    N  GR A
Sbjct: 276 NPPFSLKEWGY-----DLWSNDPYGRKQYGLAPKTNGDFAWVQHMFASL----NDNGRMA 326

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G A   E  IR  LL+ + I AI+ + ++LF+ T I   + +L   +   
Sbjct: 327 VVLPHGVLFRGGA---EGVIRTKLLKENRIVAIIGVASNLFYGTGIPACILVLRKSRPAT 383

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            +  V +INA +++T     G+ +  +++ Q   I  IY  
Sbjct: 384 HKDHVLIINAEEIYTK----GRAQNTLSNKQADDIYQIYHD 420


>gi|271968782|ref|YP_003342978.1| Site-specific DNA-methyltransferase [Streptosporangium roseum DSM
           43021]
 gi|270511957|gb|ACZ90235.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Streptosporangium roseum DSM 43021]
          Length = 544

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 104/562 (18%), Positives = 184/562 (32%), Gaps = 67/562 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-----REKYL 60
            S   + + +WK A+ L G      + + +L    L+ +  A    R+ +       +  
Sbjct: 18  SSTKEIQDILWKAADKLRGSMDAAQYKEFVLGLVFLKYVSDAFAERRATLAADPELAELP 77

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---------TRNNLESYIASFSDNA 111
               +    E         F+         +               ++    I   +   
Sbjct: 78  EHRRAAFLEEKDEYTEANVFWVPPPARWDYISDNAQSAVDGVGKLLDDAMDAIMKENPTL 137

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFGSE 169
             +         + +      L ++    S              V+   YE+ + RF   
Sbjct: 138 TGVLPKIFNRDNVDK----KRLKELVDLISDARFTGHGARPAQDVLGETYEYFLERFARA 193

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP  VV L   +L                 +YDP CG+GG    A   V  
Sbjct: 194 EGKRAGEFYTPASVVRLLVEIL-----------EPYEGRVYDPCCGSGGMFVQAGKFVTA 242

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                     +  +GQE    T  +    + I  ++     D     +   T   D    
Sbjct: 243 HAGRDHTH-DIAVYGQETNERTWRLAKMNLAIHGMDPKGVGD-----RWADTFDDDKLPD 296

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  + ++NPPF               +N    R+  G+P  S+ +  +L H+  KL   
Sbjct: 297 LKADFVMANPPFNLS---------DWARNVGDRRWMYGVPPQSNANYAWLQHIVFKL--- 344

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              G    ++ + S        SGE EIR  L++ DL+  +VALP +LF  T I   LW 
Sbjct: 345 GERGSAGVVLANGSM---ASKQSGEGEIRTKLVQADLVACMVALPGNLFRTTAIPACLWF 401

Query: 410 LSNRKT-------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           L+  KT        ERRG+V  I+A +L T +       RI+ D+   +I D Y +    
Sbjct: 402 LTKDKTPQGAKALAERRGEVLFIDARNLGTMVDRTE---RILTDEDLARIADTYHAWRGT 458

Query: 463 KFSR----MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           + +R      +          +       F+L          ++     +   +     +
Sbjct: 459 RSARAKGLKYENVAGFCHSASLEEIREHDFVLTPGRYVG-ATEVEEDPDAEPVEERVARL 517

Query: 519 LKPMMQQIYPYGWAESFVKESI 540
            K + +        E  V+E +
Sbjct: 518 TKELFEHFEESARLEKVVREQL 539


>gi|317501108|ref|ZP_07959314.1| type I restriction-modification system [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897495|gb|EFV19560.1| type I restriction-modification system [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 501

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/539 (17%), Positives = 205/539 (38%), Gaps = 59/539 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  LWG    +++  VI+    L+ +  A +     +  +  
Sbjct: 1   MAEKNTANIGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDKKYQQLVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113
              G   + +    +    F+   +     + +   +  + +        I + +   K 
Sbjct: 59  ---GDGFEDDPDAYLEDNVFFVPEDARWDKIAAAAHKPEIGTVIDDAMRAIEADNKKLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L  +   F+ +++        V+   YE+ I +F  +  +G
Sbjct: 116 VLPKNYASPDLDK----RVLGDVVDLFTNMDMGETEGNRDVLGRTYEYCIAQFAEKEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V+   ++L           P     +YD  CG+GG    +   +     +
Sbjct: 172 GGEFYTPSSIVNTLVSIL----------KPYSNCRVYDCCCGSGGMFVQSAKFIQAHSGN 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE  P+T  + +  + IR L++D             T + DL    +  
Sbjct: 222 RG---SISIYGQEANPDTWKMAIMNLTIRGLDADLGA------YHADTFTNDLHPTLKAD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF          ++         R+  G+P  S+ +  ++ H+ + L       
Sbjct: 273 FILANPPFNYNPWGQDKLMD-------DVRWKYGIPPASNANFAWIQHMIHHLAP----N 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L       GE EIR+ ++E+DLIE I+A+P  LF+   I   LW +S  
Sbjct: 322 GKIGLVLANGAL--SSQSGGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFISKG 379

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K  +++GK   I+A  +   +     K R   ++  +++ + + + +NG           
Sbjct: 380 K--KQKGKTVFIDARKMGHMVDR---KHRDFTEEDIQKLANTFEAFQNG-----TLEDEK 429

Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           G+  +  +    +  ++L       +E  +   +      +     L  M ++ +    
Sbjct: 430 GFCSVATIQDIAKQDYVLTPGRYVGIEEQVDDGEPFEEKMTRLTSELSDMFERSHELED 488


>gi|78044904|ref|YP_359683.1| type I restriction-modification system subunit M [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997019|gb|ABB15918.1| type I restriction-modification system, M subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 814

 Score =  318 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 104/482 (21%), Positives = 198/482 (41%), Gaps = 55/482 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L   ++K A+ L G    +++ + I     L+         +  +   Y   G S+
Sbjct: 9   TLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGFSD 68

Query: 67  IDLESFVKVAGY--SFYNTSEYSLSTLGS--TNTRNNLESYIASF---SDNAKAIFEDFD 119
             ++   +       FY   +     + +   +  N L   +++    +     + +  D
Sbjct: 69  EQIKELTEDPNSYDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPELDGVLKHID 128

Query: 120 FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDF 177
           F++T  +++ K   L  +  +F+   L P++      +   YE+L++ F     +   +F
Sbjct: 129 FNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFPDLLGAAYEYLLKEFADSAGKKGGEF 188

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  V  L   L+           PG   T+YDPT G+GGFL +A ++V + G      
Sbjct: 189 YTPAGVKKLMVRLV----------KPGENMTVYDPTVGSGGFLIEAFHYVEEKGQD---R 235

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFH 293
             L  +GQEL   T ++C   M++  +          +I+    L+  +F      KRF 
Sbjct: 236 YNLGLYGQELNGLTWSICKMNMILHGI-------SDAHIENEDVLTTPMFLENGYIKRFD 288

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI--SDGSMLFLMHLANKLELPPN 351
             L+NPPF + +                 RF  G          ++FL H+   L+    
Sbjct: 289 RVLANPPFSENYT--------RANMQYPERFKYGFTPETGKKADLMFLQHMIASLKDD-- 338

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G  A V+    LF G     E  IR  +++  +IEAI+ LP  LF+ T I   + +++
Sbjct: 339 --GIMATVMPHGVLFRGGQ---EKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVIN 393

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
             K E  + K+  INA   +      G+ +  +  +   +I++++  ++    +SR++D 
Sbjct: 394 KNKPEHLKNKILFINADREYGE----GRNQNFLRPEDIEKIVNVFDEKKEIPGYSRLVDI 449

Query: 471 RT 472
           + 
Sbjct: 450 KE 451


>gi|330874480|gb|EGH08629.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 418

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/412 (25%), Positives = 168/412 (40%), Gaps = 105/412 (25%)

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           + + S LF G AGSGES IRR L+ENDL++AI+ LP +LF+ T I TY+W+LS+ K  +R
Sbjct: 1   MHNGSSLFTGDAGSGESNIRRHLIENDLLDAIIQLPNNLFYNTGITTYIWLLSSNKPVQR 60

Query: 419 RGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRE--------NGKFSRMLD 469
           RGKVQLI+A+ L+  +R N G K      +    I   Y+           +G  +++ D
Sbjct: 61  RGKVQLIDASLLYRKLRKNLGNKNCEFAPEHIELITQTYLDVASLDRPAGGDGIAAQVFD 120

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP-------- 521
            R FGY ++ + RP R         +  L  D   R+        W + L          
Sbjct: 121 NRDFGYHKVSIERPDRRKAQFSAERIETLRFDKALREPMQWIYQQWGEALYQDETLAKHE 180

Query: 522 ----------------------------------------MMQQIYPYGWAESFVKESIK 541
                                                   +MQ I    + +  +   + 
Sbjct: 181 KAILAWCEEQGLELNIKQRKKLLNLETWAKQALLVTVANYLMQAIGSDEYDDFNLFAKLV 240

Query: 542 SNEAKTL----KVKASKSFIVAFINAFGRKDPRADPVT---------------------- 575
               K L     +K   S     +NA    D  A  V                       
Sbjct: 241 DKVLKQLNKEVGIKLGASERNQVLNAVSWYDENAVKVLRKVEKFDRAELAALLERLDCIE 300

Query: 576 -----------DVNGE---WIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFI 621
                      D  GE   +  +++L + E++P  +SI  +F  EV PHV +A+I+    
Sbjct: 301 ADLVDFGYYPSDKAGEWITYESNSDLRDSESIPLADSIHHFFKAEVQPHVEEAWINL--- 357

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                E  ++GYEI+FN++FY++QP R + ++  E+  +E Q   L+ E+  
Sbjct: 358 -----ESVKIGYEISFNKYFYKHQPLRSMDEVAREIVALEQQAEGLIAEILG 404


>gi|294339298|emb|CAZ87654.1| type I restriction-modification (R-M) system HsdM [Thiomonas sp.
           3As]
          Length = 521

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 181/474 (38%), Gaps = 60/474 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-----FG 63
             L   +W  A+ L       ++  ++L    ++ +  A +  R  ++ ++       + 
Sbjct: 3   QDLKKTLWATADKLRSSMDAAEYKHIVLGLIFIKYISDAFDERREQLKAQFNDPASDLYL 62

Query: 64  GSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
               D E+ ++   Y      F+        TL       ++          I + +   
Sbjct: 63  PDAADQEAALEERDYYTMANVFWVPEAARWETLRGQAKFWDIGIRIDQALDAIEADNPRL 122

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I +     + +      G + ++    S I     T    V+  +YE+ + +F S   
Sbjct: 123 KGILDKRFGRAQLE----PGKMGELVDLVSTIGFGSGTHAKDVLGEVYEYFLGQFASAEG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L                 +YDP CG+GG    +   +   G
Sbjct: 179 KKGGQFYTPASVVKVLVEVLAPHKG-----------KVYDPCCGSGGMFVQSEKFIESHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE  P T  +    + IR ++ +  ++ +       T  +D     +
Sbjct: 228 GR---FGDISIYGQEANPTTWRLVAMNLAIRGMDFNLGKEPA------DTFHRDQHPDLK 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF               +  +  R+  G P  S+ +  +L H+   L    N
Sbjct: 279 ADYVLANPPFNISDWGGD-------RLLDDKRWLYGTPNPSNANYAWLQHILWHL----N 327

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A +VL++  +      + E  IR+ ++E D++E +VALP  LFF T I   LW L+
Sbjct: 328 ASGQAGVVLANGSM--SSNQNNEGVIRKAMVEADVVEVMVALPPQLFFNTQIPACLWFLT 385

Query: 412 NRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             KT    +RRG+V  I+A  L      EG+  R+ +D+   +I D        
Sbjct: 386 KSKTAHGRDRRGEVLFIDARKLGRM---EGRVFRVFDDEDVAKIADTVHRWRQD 436


>gi|149920794|ref|ZP_01909257.1| possible type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
 gi|149818312|gb|EDM77764.1| possible type I restriction-modification system methylation subunit
           [Plesiocystis pacifica SIR-1]
          Length = 511

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 114/535 (21%), Positives = 208/535 (38%), Gaps = 62/535 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+  T +   L +++W  A  L G     D+ + I P    +RL    +   +     Y 
Sbjct: 4   MS-DTLTQDELESYLWGAATILRGLVDAGDYKQFIFPLVFYKRLSDVWDEDYAEALADY- 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLES---YIASFSD-NAKAI 114
                +   E  +  A   F        + L   + N    ++     I + +    + I
Sbjct: 62  -----DDSEELALAQANERFVIPEGAHWNDLRKAAKNVGKAIQDAMRAIEAANPGRLEGI 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D  +++   RL     L  + ++FSG  L    VP+ ++ + YE+L+ +F  +    A
Sbjct: 117 FGDAPWTNK-NRLPDH-TLKSLLEHFSGQVLSIARVPEDMLGDGYEYLVGKFADDGGSTA 174

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           ++F T R +VHL   +L           P    ++YDPTCGTGG L  A+  V   G   
Sbjct: 175 QEFYTNRTLVHLMAQML----------KPQDGESIYDPTCGTGGMLLSALAEVRRTGGDQ 224

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
           +       +GQE    T ++    +++  +E          I++G TL++  F      +
Sbjct: 225 RTLG---LYGQERNHMTASIARMNLVLHGVEDFE-------IKRGDTLARPRFVEGDRLR 274

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   L+NPP+  K         +       GR   G P        F  H+   ++   
Sbjct: 275 TFDVVLANPPYSIKRWN-----REAWGADAWGRNFLGTPPQGRADYAFFQHILKSMDPET 329

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR AI+     LF       E ++R+ L+E DL+E ++ L  +LFF + +   +   
Sbjct: 330 ---GRCAILFPHGVLFR----KAEQDLRQKLVEADLVECVLGLGPNLFFNSPMEACVVFC 382

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469
            + K   R+G++  I+A +     R        +  + +++I   Y +  +   FS++  
Sbjct: 383 RSEKPAARKGRILFIDAVNEIARERAVS----FLRPEHQQRIFGAYEAFGDESSFSKVAT 438

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT------WRKLSPLHQSFWLDI 518
                 R   +  PL +  ++ K      E          W +     ++FW  +
Sbjct: 439 LDEVAARGHNLSIPLYVKRVVKKKKKKAAEDSGARSLSEVWTEWEQEDRAFWQQM 493


>gi|271498973|ref|YP_003331998.1| type I restriction-modification system, M subunit [Dickeya dadantii
           Ech586]
 gi|270342528|gb|ACZ75293.1| type I restriction-modification system, M subunit [Dickeya dadantii
           Ech586]
          Length = 507

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/542 (19%), Positives = 196/542 (36%), Gaps = 58/542 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+        + N +W   +   G      +   IL    L+ +    +      + +Y 
Sbjct: 1   MSNKID-QNRINNVLWSVCDIFRGTISPDTYKDFILTMLFLKYISDVWQDHYDGYKAEYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113
                    +  E FV     SFY   ++             L +   +     K     
Sbjct: 60  DEPELIEEMMKNERFVLPKQASFYTLFQHRNEPGNGERIDKALHAIEEANGTKLKDAGKS 119

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGS 168
           +F+D  F+        +K G+L  + + FS  +L           V+ N YE+LI +F +
Sbjct: 120 VFQDISFNTDKLGEEKQKNGILKDLLEEFSCADLDLKPSRIGGLDVIGNAYEYLIGKFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A ++ TP +V  L   LL           P    T+ DP CG+   L      V 
Sbjct: 180 NSGQKAGEYYTPPEVSDLMAELL----------DPQPGDTICDPACGSASLLMKCGRKVV 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                         +GQE    T ++    M +   +       +  I+ G T+      
Sbjct: 230 QNHGS----KQYELYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLL 278

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K      F    +NPPF             E ++ +  RF  GLP  + G   F++H+ 
Sbjct: 279 DKNGDLKLFDIVTANPPFSLD-----KWGYSEVESDKFSRFRRGLPPKTKGDYAFILHMI 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GR  +V+    LF G   S E +IR+ L+E +L++A++ LP  LFF T I
Sbjct: 334 ETLKPKA---GRMGVVVPHGVLFRG---SSEGKIRQKLIEENLLDAVIGLPEKLFFGTGI 387

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + I   +K       V  I+A+  +      GK +  ++ +   +++ IY  R+N  
Sbjct: 388 PASILIFKKQK---VDDNVLFIDASREFDP----GKNQNRLSTENIVKVVKIYRDRDNVD 440

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K++ +   +        +  P  +    ++  +  +      ++L         ++ K +
Sbjct: 441 KYAYLASLQEIRDNDYNLNIPRYVDTFEEEQEIDLMVVRAERKQLQAQLAELEAEMAKYL 500

Query: 523 MQ 524
            +
Sbjct: 501 EE 502


>gi|254448602|ref|ZP_05062061.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
 gi|198261791|gb|EDY86077.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
          Length = 499

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/533 (22%), Positives = 207/533 (38%), Gaps = 68/533 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +       +W  A  + G    +D+   I P    +R+    +       +     G   
Sbjct: 5   NIKDFEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYD---EEFIDAMEQVGDEE 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
           +          +      E     + S   +    L+     I   +     IF D  ++
Sbjct: 62  LAKGDMF----HRIQIPQECHWKDVFSETKDIGQALKDAFRGIELANPKLHGIFGDASWT 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  +  +F+ + L   +V D  M   YE+LI+RF  + ++ A +F TPR
Sbjct: 118 NK-DRLSD-ELLATLLNHFNKVNLGVASVRDDDMGRAYEYLIKRFADKANKKAGEFYTPR 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L           P    ++YDP CGTGG L + ++HV + G   ++     
Sbjct: 176 TIVRLMVNIL----------DPQAGESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
             GQE    T A+    + +   E         +I +G TL +  F      + F   ++
Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQE-------DFDIVRGDTLREPKFLVNDRLETFDCVIA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K                 GR   GL   ++G   ++ H+   L       GR A
Sbjct: 276 NPPFSLKEWGHALWSAD-----PYGRKQYGLAPKTNGDFAWVQHMFASLNEQ----GRMA 326

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G A   E  IR  LL+ + IEAI+ + ++LF+ T I   + +L   +  +
Sbjct: 327 VVLPHGVLFRGGA---EGAIRTKLLQENCIEAIIGVASNLFYGTGIPACILVLRKSRPAD 383

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD--YRTFG 474
            +  V +INA +++T     G+ +  +++DQ  +I +IY  +E  G  +  ++   R   
Sbjct: 384 HQDHVLIINAEEIFTK----GRAQNTLSNDQADEIFNIYRQQETLGPKAEEIEGVARWVA 439

Query: 475 YRRIK-----------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
              I+           V +PL    I  +  L   +  +   + +       L
Sbjct: 440 LTEIEENDFNLNIARYVQKPLEEETITVEEALKDFQQKLAALERAENELEALL 492


>gi|91773202|ref|YP_565894.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91712217|gb|ABE52144.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 519

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 99/542 (18%), Positives = 194/542 (35%), Gaps = 61/542 (11%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +        ++   +WK A+ L  +    ++  ++L    L+ +  + E     +++ 
Sbjct: 1   MAKNNNKTQDETIEKQLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELYQKLQKG 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
              + G++   +     A   F+  +    S L S   +  +          I   +   
Sbjct: 61  DGDYTGAD-PEDRDEYKAENVFFVPAIARWSYLQSKAKQPEIGKDVDRAMDAIERENPLL 119

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +         +        L  +    S I L         ++ +++E+ +  F    
Sbjct: 120 KGVLPKVFARGNL----DPTSLGGLIDLVSNIALGDAKARSADILGHVFEYFLGEFALAE 175

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TPR VV L   +L                 ++DP CG+GG    +   VAD 
Sbjct: 176 GKRGGQFYTPRSVVELLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFVADH 224

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                    +  +GQE    T  +    + IR ++S   +  ++      +   D     
Sbjct: 225 RGKVN---DISIYGQESNQTTWRLAKMNLAIRGIDSSQVKWNNEG-----SFLNDSHKDL 276

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y ++NPPF                  + GR+  G+P   + +  ++ H    L    
Sbjct: 277 KADYVIANPPFNDSDWSGD-------LLRKDGRWKYGVPPAGNANYAWIQHFLYHLSP-- 327

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+A  VL+   L +    SGE +IR+ L+E+ +++ IV LP  LF  T I   LW L
Sbjct: 328 --NGQAGFVLAKGSLTS--KSSGEGDIRKELVESRMVDCIVNLPPKLFLNTQIPASLWFL 383

Query: 411 SNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           S  K       R  ++  I+A ++   I     + R  + +  +++ D Y +  N   + 
Sbjct: 384 SRNKANGKYRNRTDEILFIDARNMGHLINR---RTREFSPEDIQKVADTYHNWRNPDGNY 440

Query: 467 MLDYRTFGYRRIK-VLRPLRMSFILDKTGLARL---EADITWRKLSPLHQSFWLDILKPM 522
                  G+     + R   + +++       L   E D  + +     ++ +   LK  
Sbjct: 441 E---DVKGFCNSTSIERVHELDYVVTPGRYVGLPVEEDDFDFNERFTGLKAEFEGQLKEE 497

Query: 523 MQ 524
            Q
Sbjct: 498 EQ 499


>gi|260905625|ref|ZP_05913947.1| N-6 DNA methylase [Brevibacterium linens BL2]
          Length = 532

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 169/477 (35%), Gaps = 65/477 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L   +WK A+ L G      +  VIL    L+ +  A E  +S +R +Y   G  
Sbjct: 12  TTMNELKATLWKAADRLRGSLSANQYKDVILGLVFLKYVSDAFEEEQSLLRVEYEEQGID 71

Query: 66  NIDLESFVKVAG-----YSFYNTSEYSLSTLGSTNTRNN----------------LESYI 104
             D+   +           F        + L                            +
Sbjct: 72  EEDIAELLLDTDTYVGEGIFLVPEAARWTFLAENAKGQAPSGAEAGRTVGALIDEAMDQL 131

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHL 162
              + + +           I +      L ++   FS        +     +M  +YE+ 
Sbjct: 132 MRANPSLRGTLPRLYNKDNIDQ----RRLGELVDLFSSTRFSRQGEHKARDLMGEVYEYF 187

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  F     +   +F TPR VV     +L                 +YDP CG+GG    
Sbjct: 188 LGEFARAEGKRGGEFFTPRPVVRTMVEIL-----------EPYSGRVYDPCCGSGGMFVQ 236

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           +   + D       P  +  +GQE   ET  +    + I  +E     +     + G T 
Sbjct: 237 SEKFIEDNNGD---PREIAVYGQESIEETWRMAKMNLAINGIEVQGLGE-----KWGDTF 288

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           ++D+    +  Y L+NPPF  K            ++ E  R+  G+P   + +  ++ H+
Sbjct: 289 ARDIHADTQMDYVLANPPFNLK---------AWARSEEDPRWTFGVPPEKNANYAWIQHI 339

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +KL      G   A   + S   N     GE +IR  ++E DL+  ++ALPT LF  T 
Sbjct: 340 LSKLNDSGKAGVVMA---NGSMSSNTG---GEGDIRAQIVEADLVSCMLALPTQLFRSTG 393

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           I   +W  + +K     G+V  I+A D+   I       R ++++   +I   + + 
Sbjct: 394 IPVCVWFFAKKKGAR-AGEVLFIDARDMGHMISRAE---RSLSNEDIEKIAGTFHAW 446


>gi|28867248|ref|NP_789867.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28850482|gb|AAO53562.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 568

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 193/489 (39%), Gaps = 68/489 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              S  +L +++W++A  L G    +DF   I     L+R     +   + +RE+     
Sbjct: 35  DKLSLETLESWLWESANILRGSIDSSDFKNYIFGLLFLKRYNDVFDERVTKLREE-ENLS 93

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
                 E   K   Y    ++ +      + N    L+     I + +   + +     +
Sbjct: 94  YGEAQEEIEDKWGKYP--ISARWFDLISRTENIGEALDKAFATIEANNPELQHVLTATQY 151

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                 L  A  L ++ ++F+  +L  D      ++ + YE+LI++F  +  +   +F T
Sbjct: 152 GDK-RVLADA-TLQRLLRHFNQYKLGNDDLYKADMLGDAYEYLIKQFADDAGKKGGEFYT 209

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPP 238
           P+ VV L   L+           P    ++YDPTCG+GG L ++ +HV+          P
Sbjct: 210 PKAVVQLVVELI----------DPRPGHSVYDPTCGSGGMLVESAHHVSGLPDGTLMGKP 259

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            ++ +GQE    T A+    + +  +          +I++G TL +         K F  
Sbjct: 260 NVLLYGQEKNLGTWAIAKLNLYLHNMH--------ASIERGDTLVEPKHLDGDYLKTFDR 311

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKN---------------GELGRFGPGLPKISDGSMLFL 339
            ++NPPF  K       +  E++                   GR   G+P      + F 
Sbjct: 312 VIANPPFSAKSWWTPLELSNENEQENGKKVKAPNYKQVSDPYGRLVYGVPPRGYADLAFA 371

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----------ENDLIEA 389
            H+   L+      GR  ++L    LF       E +IR  LL            D+IEA
Sbjct: 372 QHMLASLKAD----GRMGVILPHGVLFRSGE---EGKIREGLLFGTGAASGNQPGDVIEA 424

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV LP+ LF+ T I   + IL+ +K    + KV +I+ +  +      GK +  ++ +  
Sbjct: 425 IVGLPSALFYNTGIPACVLILNKQKPSALKDKVIIIDGSRDYLE----GKAQNSLHAEDI 480

Query: 450 RQILDIYVS 458
            +I+  + +
Sbjct: 481 LRIVSTHKA 489


>gi|21673506|ref|NP_661571.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
 gi|21646613|gb|AAM71913.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
          Length = 531

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 109/574 (18%), Positives = 207/574 (36%), Gaps = 93/574 (16%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           ++  G+  +L     ++K A+ L G+ + +D+  V L    L+ +  A E    A     
Sbjct: 6   SDKNGNGGNLGFEAELFKAADKLRGNMEPSDYKHVALGLIFLKYISDAFEAKHKA--LLA 63

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112
                +    E     A   F+   E   S L +   +  + + I          + + K
Sbjct: 64  EDALAAEDKDEYL---ADNVFWVPKEARWSHLQANAKQPTIGTLIDDAMRAIEKDNASLK 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGI----------ELHPDTVPDRVMSNIYEHL 162
            +         + ++    +L ++    SGI              +     ++  +YE+ 
Sbjct: 121 GVLPKDYARPALNKV----MLGELIDLISGIGHLLPSPSGRGAGGEGQSFDILGRVYEYF 176

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +F     +   +F TPR VV +   +L                 +YDP CG+GG    
Sbjct: 177 LGQFAGAEGKRGGEFYTPRSVVRVLVEML-----------EPYSGRVYDPCCGSGGMFVQ 225

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-- 280
           +   V + G        +  +GQE       +    + +R +++D        I+  +  
Sbjct: 226 SEKFVQEHGGRIG---DIAIYGQESNYTAWRLAKMNLAVRGIDAD--------IRWNNEG 274

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +  KD     +  Y L+NPPF               +  E  R+  G+P + + +  +L 
Sbjct: 275 SFHKDELRDLKADYILANPPFNISDWGGD-------RLREDVRWQFGVPPVGNANYAWLQ 327

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+   L       G A +VL++  +      SGE EIRR +LE D ++ +VALP  LF+ 
Sbjct: 328 HIYWHLAP----NGTAGVVLANGSM--SSNQSGEGEIRRAMLEADAVDCMVALPGQLFYS 381

Query: 401 TNIATYLWILSNRKTE---------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           T I   LW L+  K           +RRG V  I+A  +   +      RR ++D++ ++
Sbjct: 382 TQIPACLWFLARNKNPANGKTGGLRDRRGHVLFIDARKMGVLVDRT---RRELSDEEIQK 438

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIK----------VLRPLRMSFILDKTGLARLEAD 501
           I   Y +      +        G+ +            VL P R     +         +
Sbjct: 439 IARTYHAWRGEPDAGDYADVA-GFCKSATLDEIRKHGHVLTPGRYVGAAEVEDDGEPFEE 497

Query: 502 ITWRKLSPLHQS-----FWLDILKPMMQQIYPYG 530
              R  +   Q           ++  ++++  + 
Sbjct: 498 KMARLAAQWRQQRDEAAKLDAAIEANLKELGFWE 531


>gi|37680392|ref|NP_935001.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199139|dbj|BAC94972.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 499

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 114/533 (21%), Positives = 202/533 (37%), Gaps = 68/533 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +W  A  + G    +D+   I P    +R+    +       E+        
Sbjct: 5   NLKDLEAHLWHAAHIITGPIDASDYKTYIFPILFFKRICDVYDEEFEDAMEQVG------ 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       +     +      + +   +    L+     I   +     IF D  ++
Sbjct: 59  -DEELAKGDMFHRIQIPANCHWKDVFAETKDIGQALKDSFRGIELENPQLHGIFGDASWT 117

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  +  +F+ + L   +V +  M   YE+LI+RF  + ++ A +F TPR
Sbjct: 118 NK-ERLSD-ELLSTLLNHFNKVNLGVSSVRNDDMGRAYEYLIKRFADKANKKAGEFYTPR 175

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L           P    ++YDP CGTGG L + ++HV + G   ++     
Sbjct: 176 TIVRLMVNIL----------DPQANESVYDPACGTGGMLLETIHHVKENGGDPRLLK--- 222

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
             GQE    T A+    + +   E          I +G TL    F      + F   ++
Sbjct: 223 IKGQEKNLTTEAIARMNLFLHGQEDFE-------IVRGDTLRDPKFLKNDQLENFDCVIA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K             +   GR   GL   ++G   ++ H+   L       GR A
Sbjct: 276 NPPFSLKEWGY-----DYWTSDPYGRASFGLAPKTNGDFAWVQHMFASLNDE----GRMA 326

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL    LF G A   E +IR  LL+ + I A++ + ++LF+ T I   + +L   + EE
Sbjct: 327 VVLPHGVLFRGGA---EGKIRTKLLKENRIVAVIGVASNLFYGTGIPACILVLRKVRPEE 383

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG--------------K 463
            +  V ++NA +++T     G+ +  +++ Q  +I  IY                     
Sbjct: 384 HKDHVLIVNAEEIFTK----GRAQNTLSEPQADEIYGIYQKMRTKGPKVDDIEGVARWVP 439

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            S + +          V +PL    I  +  L   +  ++  + +       L
Sbjct: 440 HSEIEENDFNLNIARYVQKPLEEETISVEEALKDFQKKLSALEQAEQELEALL 492


>gi|329118872|ref|ZP_08247568.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465063|gb|EGF11352.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 577

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/566 (17%), Positives = 192/566 (33%), Gaps = 81/566 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR------------- 56
           SL + +WK A+ L  +    ++  ++L    L+ +       +  +              
Sbjct: 49  SLEDTLWKAADKLRSELDAANYKHIVLGLIFLKYISDTFAAQQRKILADLQNPENPLYLD 108

Query: 57  -EKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESY------- 103
              Y +       LE+ ++   Y      F+         + +     N           
Sbjct: 109 PALYESPEDYQAALEAELEERDYYTQDNVFWVPRPARWHEIAAAALLENGAELPWGGRFN 168

Query: 104 -IASFSDNAKAIFEDFD--FSSTIARLE----KAGLLYKICKNFSGIELHPDT--VPDRV 154
            + +  DNA    E  +      + R+     +   L  + + FS              +
Sbjct: 169 SVPALIDNAFDAVEKDNPRLKGVLERISGYGVRGDTLIGLIQLFSQNTFQSHGTLTAKDI 228

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE+ + RF     +    + TP+ +V L  ALL                 +YDP  
Sbjct: 229 LGHVYEYFLGRFALAEGKRGGQYFTPKAIVSLIVALL-----------EPYQGRVYDPAM 277

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GGF       +     +      +  +GQE    T  +    M I  LE +  +  + 
Sbjct: 278 GSGGFFIQTERFIRAHQGNTG---NISIYGQEKNRTTWKLAAMNMAIHGLEYNFGKGNA- 333

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                 T +      ++  + ++NPPF             E   G   R+  G P   + 
Sbjct: 334 -----DTFTAPQHLDQKMDFVMANPPFNAS------DWWSEELAG-DPRWQYGTPPEGNA 381

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +L H+ + L       GR A++L++  +      SGE +IRR L++ DL+EA++ALP
Sbjct: 382 NYAWLQHMLHHLAPA----GRMALLLANGSM--SSQSSGEGDIRRALIQADLVEAMIALP 435

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             LF  T I   +WIL   K +  +G+   I+A ++          +R +      +I D
Sbjct: 436 GQLFTNTQIPACIWILHKAKPQ--KGQTLFIDARNMGYLKDRA---QRDLAPADIERIAD 490

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL-----ARLEADITWRKLSP 509
            Y   +          +             R  ++L          A  +++    K++ 
Sbjct: 491 TYHRWQKAD---RYQNQPAYCHAATTEEIARNDYVLTPGRYVGTVEAEADSEPFVEKMAR 547

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESF 535
           L +       +    +       E  
Sbjct: 548 LTKQLNEQFAQGAELEAQIKKNLEEL 573


>gi|91215848|ref|ZP_01252817.1| type I restriction-modification system methyltransferase subunit
           [Psychroflexus torquis ATCC 700755]
 gi|91185825|gb|EAS72199.1| type I restriction-modification system methyltransferase subunit
           [Psychroflexus torquis ATCC 700755]
          Length = 693

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 172/729 (23%), Positives = 305/729 (41%), Gaps = 111/729 (15%)

Query: 12  ANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGSNIDL 69
            + IW+ A+ L G   K +DF K ++PF  L  +E  L   ++  V +            
Sbjct: 7   ESEIWETADLLRGAGIKTSDFPKYMMPFFALLMVESRLIRESKRMVDDGESQDNMDEFVE 66

Query: 70  ESFVKVAGY-SFYNTSEYSLSTLGSTNT--RNNLESYIASFSDNAKAIF--------EDF 118
              ++  GY  F      SL  +   +     + +SYI SF    K +         E F
Sbjct: 67  IFQLEGLGYNDFVIREGKSLKDICKNDKTFDVDFQSYIKSFDAETKYLLGVDKGTEEEKF 126

Query: 119 -DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            D S     L+K  +L+   K +S I+L P    +  ++ + EH+ R++    +E A + 
Sbjct: 127 LDISGISGLLKKKRILFNTVKTWSAIDLTP--YNNSEITTLEEHIKRKWADISAETAGEQ 184

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP D++ L T L+    +           ++YDPTCG G  L    + +     + +  
Sbjct: 185 YTPDDIISLITELIATRIEDN-----EQFLSIYDPTCGGGNLLFGVEDKI-----NKEFN 234

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G++     +A+            + R      I+ G+TL+   F  KRF   ++
Sbjct: 235 RPTSTFGEDWSDSLYALAK---------IESRFRQDSTIKYGNTLTDINFIEKRFDVIVA 285

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G  W+  K  +    +N    RF   LP ISDG  LF  H+  +LE      G A 
Sbjct: 286 NPPYGVDWKGFKKDI----ENDTTERFID-LPSISDGQFLFTQHILYQLEDD----GFAV 336

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V + S LF+G AGSGES IR+   E D +EAI+ +PTD FF T I TYLW+ +  K  +
Sbjct: 337 VVHNGSTLFSGDAGSGESNIRKHFFEQDWVEAIIQMPTDEFFNTGIYTYLWVFNKNKKAD 396

Query: 418 RRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           R+ KV L+NA+DL+    +++GKKR+ +N D R +I+  +   +  +++++ D   F + 
Sbjct: 397 RKDKVMLLNASDLFEKLKKSKGKKRKKMNADNRAEIVKAFTDYKENEYTKIFDKWEFYFN 456

Query: 477 RIKV----------------------LRPLRMSFILDKTGLARLE--ADITWRKLSPLHQ 512
           +  +                          + S  +D + +  L+   +   + ++ +  
Sbjct: 457 KQSIMLTNVDENGKSITMPTKENREGELVEQKSIKIDASSVLILDSFKENGMKAINQMET 516

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD 572
           + + +     +++ Y   +     + + K++    L    +       I        +  
Sbjct: 517 TEYPEDEYQNLKEYYDKHYKNYVAEFNYKADAFAVLDTNGNAYTYNTSIETIIETTKKQV 576

Query: 573 PVTDVNGEWIPDT---------------------NL-TEYENVPY-------LESIQDYF 603
                NG+ +                        +L  +YE + Y        ++I ++ 
Sbjct: 577 ETELGNGKIVVKASYKKATKTREAKIEVAVTLTKDLQKDYEIINYAPIEATNQQNIANFM 636

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQ 663
            + ++   P  YID             VG E+NFN+ FY+ +  R +  I A+L  +E  
Sbjct: 637 AKYITK--PFEYIDN-----------VVGVELNFNKVFYKSEILRTVSTITADLNSLEND 683

Query: 664 IATLLEEMA 672
           +  L +E+A
Sbjct: 684 LQDLEKELA 692


>gi|189423916|ref|YP_001951093.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420175|gb|ACD94573.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 492

 Score =  317 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 110/466 (23%), Positives = 187/466 (40%), Gaps = 60/466 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +++W  A  L G     D+ + I P    +R+    +                 
Sbjct: 6   SQQELESYLWGAATLLRGLIDAGDYKQFIFPLLFFKRVSDVYDEEYQ-----------QA 54

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLES---YIASFSDN-AKAIFEDFDF 120
           +D         + F   + +  S +  T  N    +++    I + + +    IF D  +
Sbjct: 55  MDESGGDFAENHRFQIPAGFHWSDVRQTPKNVGMTIQTAMRAIEAANPDQLTGIFGDAPW 114

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL     L  + ++FS   L    VP+  + N YE LI++F  +    A +F T 
Sbjct: 115 TNK-ERLPD-ETLKDLIEHFSTQTLSVANVPEDELGNAYEFLIKKFADDSGHTAAEFYTN 172

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VVHL T LL           P    ++YDPTCGTGG L  A+  V   G  ++     
Sbjct: 173 RTVVHLMTQLL----------DPQPGESIYDPTCGTGGMLLSALAEVKRTGGEYRTLK-- 220

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCL 296
             +GQE    T  +    + +  +E          I +G TL++         K+F   L
Sbjct: 221 -LYGQERNLMTSGIARMNLFLHGIE-------DFQIARGDTLAEPKLIEGDRLKQFDVIL 272

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K            ++ + GR   G P        F  H+   L       GR 
Sbjct: 273 ANPPYSIKQWD-----RPAFESDKWGRNFLGTPPQGRADYAFFQHILKSLTKK----GRC 323

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AI+     LF       E E+R  ++  DL+EA++ L  +LF+ + + + + +    KT 
Sbjct: 324 AILWPHGVLFRNE----EQEMRAKMIAQDLVEAVIGLGPNLFYNSPMESCVVVCRRNKTG 379

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           ER+GKV  I+A +  T  R     +  +  + + +IL  + + ++ 
Sbjct: 380 ERKGKVLFIDALNEVTRERA----QSFLKPEHQDRILAAFRNFQDD 421


>gi|28868301|ref|NP_790920.1| type I restriction-modification system subunit M [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851538|gb|AAO54615.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 576

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 95/498 (19%), Positives = 183/498 (36%), Gaps = 67/498 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  + +   L   +W  A+ +  +    ++  ++L    L+ +  +    R+ +  K+  
Sbjct: 50  TATSSTLQDLEKTLWATADKMRANMDPAEYKHIVLGLIFLKYISDSFAGRRAELERKFSD 109

Query: 62  FGGS------------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105
            G              +   E         F+        +L +   + ++   I     
Sbjct: 110 AGDDYYLGGDDPTYLASELEERDYYKEVNVFWVPEPARWESLRAAAKQVDIGKRIDDALA 169

Query: 106 ---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEH 161
              + +   K I +     + +      G L ++    S I    D      ++  +YE+
Sbjct: 170 DIEAENPQLKNILDKRYARAQLPD----GKLGELVDMISIIGFSSDANKARDLLGQVYEY 225

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F S   +    F TP  +V    A+L                 +YDP CG+GG   
Sbjct: 226 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPHHG-----------KVYDPCCGSGGMFV 274

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +   +   G        +  +GQE  P T  +    + IR ++ +  ++ +       +
Sbjct: 275 QSEKFIEAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGMDFNLGKEPA------DS 325

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
             ++  +  R  + L+NPPF                     R+  G P   + +  +L H
Sbjct: 326 FIRNQHSDLRADFVLANPPFNIS-------DWWHGSLDGDSRWVYGTPPQGNANYAWLQH 378

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L+      GRA IVL++  + +    + E +IRR ++E D++E +VALP  LFF T
Sbjct: 379 MLFHLKSS----GRAGIVLANGSMSSS--QNSEGDIRRAMVEADVVEVMVALPGQLFFNT 432

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
            I   LW L+ +K +   G+V  I+A  L T+I      +  + D     I     +   
Sbjct: 433 QIPACLWFLAKQKNKRP-GEVLFIDARKLGTNISRV---QIELLDSDIESIAQTVANWRG 488

Query: 461 -----NGKFSRMLDYRTF 473
                +G+ +   D   F
Sbjct: 489 VPLEVDGEIAEYADVAGF 506


>gi|152979298|ref|YP_001344927.1| type I restriction-modification system, M subunit [Actinobacillus
           succinogenes 130Z]
 gi|150841021|gb|ABR74992.1| type I restriction-modification system, M subunit [Actinobacillus
           succinogenes 130Z]
          Length = 505

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 180/474 (37%), Gaps = 56/474 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---AFG 63
           +   +   +W   +   G      +   IL    L+ +    +      + +Y       
Sbjct: 6   NQDDINKALWAACDTFRGTISADTYKDFILTMLFLKYISDVWQDHYQNYQAEYGDVPELI 65

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFED-- 117
              +  E FV     +FY   E+             L +   +     K     +F+D  
Sbjct: 66  EEMMKQERFVLPPQANFYYLYEHRFEAGNGERIDLALHAIEEANGTKLKDAGKSVFQDIA 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174
           F+        +K  +L ++ ++F+  EL           ++ N YE+LI+ F +   + A
Sbjct: 126 FNTDKLGEEKQKNTILRELLEDFAKPELDLKPSRVGTLDIIGNAYEYLIKNFAASGGQKA 185

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L   LL           P +  ++ DP CG+G  L      V       
Sbjct: 186 GEFYTPPEVSDLIAELL----------DPQIGDSICDPACGSGSLLMKCGRKVQQNYQS- 234

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
                   +GQE    T ++    M +   +       +  I+ G T+     T K    
Sbjct: 235 ---KNYELYGQEAIGSTWSLAKMNMFLHSED-------NHRIEWGDTIRNPKLTDKQGNL 284

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F    +NPPF       ++A +   +     RF  GLP  + G   F+ H+   L+  
Sbjct: 285 LKFDIVTANPPFSLDKWGYEEAGQDRFQ-----RFVRGLPPKTKGDYAFISHMIATLKD- 338

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
             G GR  +V+    LF G A   E +IR+ L+E +L++A++ LP  LF+ T I   + I
Sbjct: 339 --GTGRMGVVVPHGVLFRGAA---EGKIRQKLIEENLLDAVIGLPEKLFYGTGIPAAILI 393

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
               KT++    V  I+A+  +      GK +  +  +   +I   Y +R+  +
Sbjct: 394 FRKDKTDDS---VLFIDASQEF----KAGKNQNTLTSENITKIHRTYQARQAVE 440


>gi|307947316|ref|ZP_07662650.1| N-6 DNA methylase [Roseibium sp. TrichSKD4]
 gi|307769458|gb|EFO28685.1| N-6 DNA methylase [Roseibium sp. TrichSKD4]
          Length = 403

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 112/339 (33%), Positives = 173/339 (51%), Gaps = 29/339 (8%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + +   L   IW  A  L G ++   + +V+LP T+LRR++  L PT+  V ++Y     
Sbjct: 27  SQNHDQLVGLIWNIANKLRGPYRPPQYRRVMLPLTVLRRMDLVLAPTKDKVLKQYAKLQA 86

Query: 65  SNIDLESFVKVAG--------YSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAI 114
                ++  K+ G           YN S+Y    L     N   NL +YI  FS  AK I
Sbjct: 87  QGHSEDAVHKILGKTASGDREQPLYNVSQYDFEKLLGDPNNIARNLVTYIEGFSPKAKDI 146

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           F  F F + I +L+ A  L+ I K F+    +LHPD V +  M  ++E L+R+F  + +E
Sbjct: 147 FSKFGFDAEIEKLDNANRLFMIIKEFTDPRVDLHPDRVNNLQMGYVFEELVRKFNEQANE 206

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A D  TPR+V+ L   L+   D+ ++   PG+ RT+YDPTCGTGG L+ +  ++ +   
Sbjct: 207 EAGDHFTPREVIRLMAHLMYTEDEDVYT--PGIARTIYDPTCGTGGMLSVSEEYIREQNP 264

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFT 288
              +    + +GQE   E++A+C + +LI+    D       NI  G TL    S+D   
Sbjct: 265 QANL----ILYGQEYNAESYAICCSDLLIKDEPID-------NIHFGDTLGDGKSEDGHP 313

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            K+FHY ++NPPFG +W+  +  V+KE     L RFG  
Sbjct: 314 DKKFHYMMANPPFGVEWKTQQSIVQKELTRLVLSRFGAA 352


>gi|327460986|gb|EGF07319.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1057]
          Length = 512

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 97/537 (18%), Positives = 207/537 (38%), Gaps = 55/537 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+         + S    + + + +       +   ++   
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSKIGTVLDKAMREIEE--DNPSL 124

Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + ++         +L ++   F+ I+++       ++   YE+ I +F +   +   
Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V     +L                 +YDP CG+GG    +   + +   +  
Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIKNHSGNIN 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   GQE   +T  +    M+IR +++D     +      ++   DL    + +Y 
Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF               K  +  R+  G P  S+ +  ++ H+ + ++      G+
Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL++  L      SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K 
Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            +++GK   I+A ++   I     K R  +++  +++ D + + +NG F         G+
Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSNEDIKKLADTFEAFQNGNF-----EDVKGF 442

Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              ++     +  FIL       +E      +            L  +  + +    
Sbjct: 443 CASVETAEIAKQDFILTPGRYVGIEDKEDDGEPFEEKMDRLTTELSELFTKSHKLED 499


>gi|134294136|ref|YP_001117871.1| N-6 DNA methylase [Burkholderia vietnamiensis G4]
 gi|134137293|gb|ABO53036.1| N-6 DNA methylase [Burkholderia vietnamiensis G4]
          Length = 528

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 102/547 (18%), Positives = 184/547 (33%), Gaps = 70/547 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI- 67
             L   +W  A+ L       ++  ++L    L+ +  A    R+ +   +         
Sbjct: 3   QDLKKTLWAAADKLRASMDAAEYKHIVLGLIFLKYISDAFCERRAQLSAAFADESDDLFL 62

Query: 68  ---------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                      E         F+  +     TL +   + ++          I + +   
Sbjct: 63  PDATDHVVALEERDYYTMANVFWVPAVARWETLRAQAKQADIGVRIDAALEAIEADNARL 122

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I +            + G L ++    S I          ++  +YE+ + +F +   
Sbjct: 123 KGILDK----RFGRTQLEPGKLGELVDLISKIGFGEGHHAKDLLGEVYEYFLGQFATAEG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L                 +YDP CG+GG    +   +   G
Sbjct: 179 KKGGQFYTPASVVRVLVEVLAPHQG-----------RVYDPCCGSGGMFVQSEKFIESHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE  P T  +    + IR   +D  ++ +       T  +D     R
Sbjct: 228 GRAD---DISIYGQEANPTTWRLVAMNLAIRGFAADLGKEPA------DTFHRDQHPDLR 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +   +         R+  G P   + +  +L H+ + L     
Sbjct: 279 ADYVLANPPFNISDWGGERLADDR-------RWAHGTPPAGNANYAWLQHILHHLSPHGQ 331

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G   A   + S   N    + E +IRR ++E D+I+ +VALP  LF  T I   LW L+
Sbjct: 332 AGVVLA---NGSMTSN---QNSEGDIRRAMVEADVIDVMVALPPQLFLNTQIPACLWFLT 385

Query: 412 NRKT----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460
             K+           +RRG+V  I+A  L           R+ +++   +I       R 
Sbjct: 386 KDKSGAPIAGAKPGRDRRGEVLFIDARKLGRMESRVV---RVFDEEHISKIAGTVHRWRA 442

Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +G+      Y    G+ R +K+        +L        EA     ++           
Sbjct: 443 DGEDGTDEPYADVPGFCRSVKLAEIAEHGHLLTPGRYVGAEATEDDDEVFDEKMERLTSQ 502

Query: 519 LKPMMQQ 525
           L   M +
Sbjct: 503 LFEQMAK 509


>gi|84385717|ref|ZP_00988748.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
 gi|84379697|gb|EAP96549.1| type I restriction-modification system methylation subunit [Vibrio
           splendidus 12B01]
          Length = 488

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 113/492 (22%), Positives = 197/492 (40%), Gaps = 55/492 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L  ++W  A  L G     D+ + I P    +R+    +       E   A   S+
Sbjct: 3   TQQDLEKYLWGAATTLRGTIDAGDYKQYIFPLMFFKRISDVYDE------EFENALADSD 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDN-AKAIFEDFDF 120
            DLE       + F        +    T         N    I   + +  + IF D  +
Sbjct: 57  GDLEYAAFAENHHFQVPEGAHWNDARETTVNIGLALQNAMRAIEKANPDTLEGIFGDASW 116

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   RL  A +L  + +++S   L+   VPD  + N YE+LI+ F  +    A +F T 
Sbjct: 117 TNK-ERLSDA-MLTNLIEHYSEQTLNLKNVPDDKLGNAYEYLIKEFADDSGHTAAEFYTN 174

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L T ++           P    ++YDPTCG+GG L +   H+   G  ++     
Sbjct: 175 RTVVKLMTMIM----------DPQPGESVYDPTCGSGGLLLNCALHLKGEGKEYRTLK-- 222

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE+   T A+    M +  +E         +I +G+TLS          K+F+  L
Sbjct: 223 -LYGQEINLLTSAIARMNMFMHGIE-------EFDIVRGNTLSNPGLLENDELKKFNVIL 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K         K  ++   GR   G P        F  H+    +    G GR+
Sbjct: 275 ANPPYSIKSWD-----RKAFESDPHGRNVWGTPPQGCADYAFQQHIQ---KSLDLGNGRS 326

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             +     LF       E+++RR ++E D +E ++ L  +LF+ + +   L I    K E
Sbjct: 327 ISLWPHGILFR----DAETDMRRKMIEQDQVECVIGLGPNLFYNSPMEACLLITKTNKIE 382

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY 475
            ++ K+  INA       +N G     ++     +I + Y++      F+ ++D +    
Sbjct: 383 SKKDKILFINAVKEVRQDKNIG----YLDQVHIDKIFNAYINFTSEENFAVLVDKQAVLD 438

Query: 476 RRIKVLRPLRMS 487
           R+  +   L + 
Sbjct: 439 RKANMAINLYIR 450


>gi|327384000|gb|AEA55475.1| type I restriction modification system protein [Lactobacillus casei
           LC2W]
 gi|327387192|gb|AEA58665.1| type I restriction modification system protein [Lactobacillus casei
           BD-II]
          Length = 538

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 122/576 (21%), Positives = 208/576 (36%), Gaps = 73/576 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100
            V  KY  +     +LE          Y  NT  Y +    L +T            ++L
Sbjct: 61  NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150
              +     + + +    DFS   A ++  +  L    +           +   +     
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + YE+LI +F S+  + A +F TPR V  +   ++              +RT+Y
Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQR----NAGDNQVRTIY 236

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L +   HV D         ++  HGQEL   T+ +    +++  +  D   
Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
               +++ G TLSKD    +   F   + NPP+   W       +   K     RF    
Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF G     E +IR+ LL ++ 
Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLMDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTGIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              ++I+  Y +R++  K++ +            +  P R     +      L       
Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIP-RYVDTFEPEPEIDLNQVKADL 502

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           K      S        +  Q+      +    E+ K
Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQVNDQSKPEAHK 538


>gi|88856340|ref|ZP_01130999.1| type I restriction-modification system methylation subunit [marine
           actinobacterium PHSC20C1]
 gi|88814424|gb|EAR24287.1| type I restriction-modification system methylation subunit [marine
           actinobacterium PHSC20C1]
          Length = 507

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 178/463 (38%), Gaps = 43/463 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGS 65
           +   L + +W  A  L G     DF   + P    + +  + +   R AV +   A    
Sbjct: 12  TQRQLESALWSAANALRGPVDAGDFKSFVFPVMFFKWISDSWDFQHRQAVSDFGDALTPE 71

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                    +     +N   Y ++    +     L     +       +F D ++S+T  
Sbjct: 72  IEADYHPFLIPDECHWNDV-YDVTVNTGSKLGKTLLRIQEANPGKLDGVFGDVNWSNT-D 129

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL ++  L K+   F  + L P+     ++   YE+L+R F     + A +F TPR VVH
Sbjct: 130 RLPES-ALTKLLDAFDKLTLDPNNASGDMLGAGYEYLLREFAEASGKKAGEFFTPRHVVH 188

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   LL           P    ++ DP CG+ G L + +N V   G   +       +GQ
Sbjct: 189 LLVKLL----------QPQSGDSVCDPACGSAGMLVETVNAVDASGGDSRTL---TLYGQ 235

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYCLSNPP 300
           E    T A+    + +   E       S  I +G T  +     +     +F   ++NPP
Sbjct: 236 EFNLTTAAMARMNLYLHGQE-------SFQIMRGDTFREPKLLDEAGQLRKFDVVIANPP 288

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  +           +K    G     +P  ++G   ++ H+ + ++      GRA I++
Sbjct: 289 FSLRNWGADMWARDPYKRAIGG----EVPPPANGDWAWIQHMVSTIKDDT---GRAGIIM 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G     E+ IR   +   L+EA++ LPT+LF+ T+I   + I    K  ER  
Sbjct: 342 PHGALFRGGK---EAAIREHFVRTGLLEAVIGLPTNLFYSTSIQVCILIFRKNKLAERVN 398

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           KV  I+A  L       G  +  ++      I   Y +  +  
Sbjct: 399 KVMFIDAKSLSVP----GTNQNTMSVANIEAIDSAYKTGRDID 437


>gi|325924114|ref|ZP_08185679.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
 gi|325545416|gb|EGD16705.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
          Length = 525

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 99/507 (19%), Positives = 184/507 (36%), Gaps = 74/507 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +  ++   +W   +   G    + +   +L    L+ +    +      + K+ 
Sbjct: 1   MNKTDIAQDTINAAVWTACDTFRGTVDPSVYKDYVLTMLFLKYVSDVWQDHYDDYKTKHG 60

Query: 61  A---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    +  E FV     +FY   +              L +   +     + +F+D
Sbjct: 61  NKPGLIEELLKNERFVLPHRANFYTLYDQRHRPGNGERIDTALHAIEDANLGKLRDVFQD 120

Query: 118 --FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSE 172
             F+ +      +K  LL  + ++F+   L+          ++ N YE+LI+ F S   +
Sbjct: 121 ISFNANKLGEEQQKNDLLRHLLEDFAKPALNLRPSRIGQLDIIGNAYEYLIKNFASSSGK 180

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP +V  L   L+           P     + DPTCG+G  L      + +   
Sbjct: 181 KAGEFYTPPEVSALMARLM----------DPQQGDEICDPTCGSGSLLLKCGRLIRERTG 230

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
             K       +GQE    T A+    M +   +       +  I+ G T+          
Sbjct: 231 SGK----YALYGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPKLLDGER 279

Query: 290 ------------------------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                                   K F   ++NPPF       +       +     RF 
Sbjct: 280 WDPFAAARGKNAKTHGSLTKPQTLKHFDIVVANPPFSL-----EKWGHDTAEVDPHDRFR 334

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            GLP  + G   F++H+   ++      GR A+V+    LF G A   E  IR+ L+E +
Sbjct: 335 RGLPPRTKGDYAFILHMIEVMKPKS---GRMAVVVPHGVLFRGAA---EGRIRQKLIEEN 388

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L++ ++ LP  LF+ T I   + +   +K ++   KV  I+A+  +      GK + ++ 
Sbjct: 389 LLDVVIGLPEKLFYGTGIPAAVLVFRTKKKDK---KVLFIDASRQYQD----GKNQNLLR 441

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRT 472
           +   ++ILD   +R+N      L    
Sbjct: 442 ESDLQRILDTVQARQNVDKYAYLASPD 468


>gi|134045655|ref|YP_001097141.1| type I restriction-modification system, M subunit [Methanococcus
           maripaludis C5]
 gi|132663280|gb|ABO34926.1| type I restriction-modification system, M subunit [Methanococcus
           maripaludis C5]
          Length = 494

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 106/541 (19%), Positives = 197/541 (36%), Gaps = 70/541 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              + A++   +WK  +   G      +   IL    ++ L            +      
Sbjct: 1   MKTNQATINAILWKACDTFRGTINSDQYKDYILTMLFVKYLSD------YYKEKLEEYKE 54

Query: 64  GSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------I 114
                 +   K  +   F      +   +       NL   I S  +  +         +
Sbjct: 55  KYGDKEDRIQKSLSREKFILDESCTFEYIYKNRNAENLGEIINSALERIEEDNKAKLEGV 114

Query: 115 FEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHP---DTVPDRVMSNIYEHLIRRFGS 168
           F + DF+S        E+  LL  +  +F+  +L         + V+ + YE++I  F S
Sbjct: 115 FRNIDFNSEAMLGKTKERNALLKHLLDDFNDPKLDLRPSKLAGNDVIGDSYEYMIAYFAS 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  +   +F TP  V  L   L+          SP     +YDPTCG+G  L  A   V 
Sbjct: 175 DAGKKGGEFFTPSQVSRLVAKLV----------SPKSGNRIYDPTCGSGSLLIKASKEVP 224

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
           D             +GQE   +T+A+C   M +  ++          I+ G T+   L  
Sbjct: 225 DNN--------FQIYGQEKNGQTYALCRMNMFLHEID-------DAKIEWGDTIRNPLHL 269

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +  +F   ++NPPF           +   +N    RFG G+P  S G   F+ H+  
Sbjct: 270 ENDSLMKFDVVVANPPFSLD-----KWGDDYAENDPYKRFGYGIPPKSKGDYAFVEHMVY 324

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                 N  G   +VL    LF G     E +IR  L+ ++ ++A++ LP +LFF T I 
Sbjct: 325 S----ANENGTVGVVLPHGVLFRGA---SEGKIREGLINDNYLDAVIGLPQNLFFGTGIP 377

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463
             + +    K       V  I+A+  +      GK + ++ D    +I++ Y +R++ + 
Sbjct: 378 ACILVFKKNK---ITNDVIFIDASKEFE----SGKNQNVLRDLDIEKIVETYKNRQDIEK 430

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +S +            +  P  +    ++  +   +      K+    +    ++ K + 
Sbjct: 431 YSHVASLEEIRENDYNLNIPRYVDTFEEEEPVDLNQVKTDISKIEGELKDIQKEMDKYLD 490

Query: 524 Q 524
           +
Sbjct: 491 E 491


>gi|126665439|ref|ZP_01736421.1| putative type I restriction-modification system, M subunit
           [Marinobacter sp. ELB17]
 gi|126630067|gb|EBA00683.1| putative type I restriction-modification system, M subunit
           [Marinobacter sp. ELB17]
          Length = 533

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 186/487 (38%), Gaps = 67/487 (13%)

Query: 1   MTEFTGSAA----SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M++ + S      +    +W  A+ L G  + +++  V+L    L+ +    E  + A+ 
Sbjct: 1   MSKQSSSVKKNTRTFEQSLWDTADKLRGTVESSEYKHVVLSLIFLKFVSDKFEARKQALI 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLES---YIASFSD 109
            +        ++           FY       +TL       +    +++    I   + 
Sbjct: 61  AEGQEAYVDMVE----FYTMKNVFYLPEHARWNTLQKQAKQDDIAIKIDTALYAIEKLNP 116

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH----PDTVPDRVMSNIYEHLIRR 165
           + K    D  FS     + K   L     N + +       PD   + ++  +YE+ + +
Sbjct: 117 SLKGALPDNYFSRMGLEVSKLAALIDSINNIATVSDQSSAGPDGNEEDLVGRVYEYFLGK 176

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +G  +F TP+ +V+L   ++                 +YDP CG+GG    ++ 
Sbjct: 177 FAATEGKGGGEFYTPKCIVNLLAEMI-----------EPYQGKIYDPCCGSGGMFVQSVK 225

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +   + K    +  +GQE    T+ +    + IR + S+     +       T  K+
Sbjct: 226 FLRNHEGNQK---DISIYGQEYTATTYKLAKMNLAIRGIASNLGDVPA------DTFFKN 276

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLAN 344
                +  + ++NPPF  K  +  D      +     R+ G   P   + +  +++H+ +
Sbjct: 277 QHPDLKADFIMANPPFNMKAWRGAD------ELSTDPRWAGYDAPPTGNANYAWILHMVS 330

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL      G   A   + S        SGE  IR+ L+ENDL++ ++ALP  LF+ T I 
Sbjct: 331 KLSAQGTAGFVMA---NGSM---STNTSGEGVIRQKLIENDLVDCMIALPGQLFYTTQIP 384

Query: 405 TYLWILSNRKTE------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
             LW ++  K               R G+   I+A ++ + I    K    +  D   +I
Sbjct: 385 VCLWFVTKNKKAQAIAGHSDSNHRNREGETLFIDARNMGSMISRTHK---ELTADDIAEI 441

Query: 453 LDIYVSR 459
              Y + 
Sbjct: 442 TRTYHAW 448


>gi|91785554|ref|YP_560760.1| Type I restriction-modification system, M subunit [Burkholderia
           xenovorans LB400]
 gi|91689508|gb|ABE32708.1| Type I restriction-modification system, M subunit [Burkholderia
           xenovorans LB400]
          Length = 519

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 100/540 (18%), Positives = 190/540 (35%), Gaps = 63/540 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              +   +W  A+    +    ++  ++L    L+ +       R+ +  ++        
Sbjct: 2   LDDIKKTLWATADKQRANMDAAEYKHIVLGLIFLKYISDTFAGRRAELTRRFADENDEYF 61

Query: 66  ----------NIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFS 108
                         +         F+        +L      T+    ++     I + +
Sbjct: 62  LRECDDELLAEELEDRDYYREVNVFWVPETARWESLRSAAKQTDIGKRIDEALAEIEAEN 121

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFG 167
              K I +     S +      G L ++    S I    D      V+  +YE+ + +F 
Sbjct: 122 PKLKGILDKRYARSQLPD----GKLGELVDLISTIGFGEDASHARDVLGQVYEYFLGQFA 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP  +V    A+L                 +YDP CG+GG    +   +
Sbjct: 178 SAEGKKGGQFYTPASIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEKFI 226

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +  +GQE  P T  +    + IR ++ +  R+ +       T  ++  
Sbjct: 227 EAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDYNLGREPA------DTFVRNQH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R  + L+NPPF                     R+  G P   + +  +L H+   L+
Sbjct: 278 PDLRADFVLANPPFNVS-------DWWHGSLEGDPRWVYGTPPQGNANYAWLQHMLYHLK 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + +    + E +IRR +++ D++E +VALP  LFF T I   L
Sbjct: 331 P----NGRAGIVLANGSMSSS--QNSEGDIRRAMVDADVVEVMVALPGQLFFNTQIPACL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W L+ +KT   +G+V  I+A  L + I      +  + D+   +I +   +        +
Sbjct: 385 WFLAKQKTTR-KGEVLFIDARKLGSMISRV---QTELTDEIIERIANTVAAWRGEAIDGV 440

Query: 468 LDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +Y    GY R +K+        +L        E      +          ++L   M +
Sbjct: 441 GEYADVPGYCRSVKLAEIAEHGHVLTPGRYVGAEKVEDDDEAFVEKMQKLTEMLGEQMAK 500


>gi|220911869|ref|YP_002487178.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6]
 gi|219858747|gb|ACL39089.1| N-6 DNA methylase [Arthrobacter chlorophenolicus A6]
          Length = 543

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 177/483 (36%), Gaps = 67/483 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK A+ L G    + +  VIL    L+ +  A +  R+ ++ +  A G +
Sbjct: 12  STMKELKDTLWKAADKLRGSMDASQYKDVILGLVFLKYVSDAFDERRNQIQAELEADGLN 71

Query: 66  NIDLESFVK-----VAGYSFYNTSEYSLSTLGSTNTRNNLES-----YIASFSDNAKAIF 115
              +   +       +   F+ +     S L                 I    D+A  + 
Sbjct: 72  EEQIAQLIDDVDEYTSRGVFWVSGRARWSYLAENAKGLPAMDGAAPKSIGLLIDDAMDLI 131

Query: 116 --EDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRF 166
             ++   ++T+ R+          L ++   F+              ++  +YE+ + +F
Sbjct: 132 MTDNKSLAATLPRIYNRDNVDQRRLGELLDLFNSARFTGQGASKARDLLGEVYEYFLEKF 191

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                +   +F TP                 L +        +YDP CG+GG    A   
Sbjct: 192 AKAEGKRGGEFYTP-----------AGVVRVLVEVLEPHRGRVYDPCCGSGGMFVQAEKF 240

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +            +  +GQEL   T  +    + I  L ++         + G T ++D 
Sbjct: 241 LEAHNMEG---SDISVYGQELNERTWRMAKMNLAIHGLNANLAA------RWGDTFARDQ 291

Query: 287 FTGKRFH----YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                 +    + ++NPPF  K            ++    R+  G+P   + +  ++ H+
Sbjct: 292 HPELTGNTGADFIMANPPFNIKVWS---------RSESDPRWKYGVPPAGNANYAWIQHI 342

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            +KL    + G   A   + S   N     GE EIR  L+E DL+  +VALPT LF  T 
Sbjct: 343 ISKLAPGGSAGVVMA---NGSMSSNSG---GEGEIRAQLVEADLVSCMVALPTQLFRSTG 396

Query: 403 IATYLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           I    W  +  KT       +R G+V  I+A +L   +       R ++D+   +I + Y
Sbjct: 397 IPVCTWFFAKDKTAGKKGSIDRTGQVLFIDARNLGYMVDRAE---RALSDEDITKIANTY 453

Query: 457 VSR 459
            + 
Sbjct: 454 HAW 456


>gi|325690777|gb|EGD32778.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK115]
          Length = 513

 Score =  316 bits (809), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 191/467 (40%), Gaps = 49/467 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+         + S    + + + +       +   ++   
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124

Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + ++         +L ++   F+ I+++       ++   YE+ I +F +   +   
Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V     +L                 +YDP CG+GG    +   + +   +  
Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIKNHSGNIN 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   GQE   +T  +    M+IR +++D     +      ++   DL    + +Y 
Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF               K  +  R+  G P  S+ +  ++ H+ + ++      G+
Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL++  L      SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K 
Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            +++GK   I+A ++   I     K R  +D+  +++ D + + +NG
Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSDEDIKKLADTFEAFQNG 434


>gi|294495710|ref|YP_003542203.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219]
 gi|292666709|gb|ADE36558.1| N-6 DNA methylase [Methanohalophilus mahii DSM 5219]
          Length = 499

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 192/483 (39%), Gaps = 56/483 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   S   L  ++W  A  L G     ++  +I P    +R+    +       E+  
Sbjct: 1   MSEP-ISQQQLEQYLWGAATLLRGVIDPGEYKSIIFPLMFFKRISDVYDEEYQQALEE-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS------TNTRNNLESYIASFSDNAKAI 114
               S  D E       + F   +    + + +         +  ++    +  D    I
Sbjct: 58  ----SGGDQEYAEFAENHRFQVPAGAHWNDVRNVSINVGQAIKTAMDDIEKANPDKLTGI 113

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F D ++++   RL    +L  + ++FS + L    VP     + YE+LI++F  +    A
Sbjct: 114 FGDANWTNK-NRLSD-NILIDLIEHFSTVNLSITNVPQDEFGSGYEYLIKKFADDSGHTA 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F T R VV L + ++           P    ++YDPTCG+GG L +A     + G  +
Sbjct: 172 AEFYTNRTVVRLMSLIV----------DPKSGESIYDPTCGSGGMLLNAALLAKEKGQEY 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
           +    +  +GQE+   T A+    M +   E          + +G TLS   F      K
Sbjct: 222 R---NIKLYGQEINIITSAIARMNMFLHGFEDFY-------VIRGDTLSNPAFVEDDRVK 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   ++NPP+  K             +    R   G P        F  H+   ++   
Sbjct: 272 KFDIVIANPPYSIK-----KWNRDGWIHDSWNRNTYGTPPQGCADYAFFQHIIASMKEDT 326

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR AI+     L        E ++R+ ++ENDLIE ++ L  +LF+ +++ + + I 
Sbjct: 327 ---GRCAILYPHGVLERNN----EKKMRKEIIENDLIECVIGLGKNLFYNSSMKSCIVIC 379

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469
           +  K E R+ K+  I+A D  +    + K    +  +   +I   Y   ++ + F+  +D
Sbjct: 380 NKNKPENRKNKILFIDAKDEISINTTQAK----LESEHIDKIHAAYSDFKSIEKFANAVD 435

Query: 470 YRT 472
              
Sbjct: 436 IEE 438


>gi|153829663|ref|ZP_01982330.1| type I restriction-modification system, M subunit [Vibrio cholerae
           623-39]
 gi|148874839|gb|EDL72974.1| type I restriction-modification system, M subunit [Vibrio cholerae
           623-39]
          Length = 510

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/480 (21%), Positives = 180/480 (37%), Gaps = 57/480 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +   +   +W +     G     D+  +IL    L+ +    +      + +Y 
Sbjct: 1   MNE-NINQDRINKALWDSCNIFRGTTDADDYIDLILTMLFLKYISDVWQDHYDGYKAQYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113
                    +  E F      SFY   E+             L +   +     +     
Sbjct: 60  DASELIEETVQYERFALPKNASFYYLYEHRNEPGNGKRIDQALHAIEEANGTKLRDSGKS 119

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168
           +F+D  F+        +K  +L  + + F+  EL+          V+ N YE+LI+ F  
Sbjct: 120 VFQDISFNTDRLGEDKQKNNILRYLLEVFAKPELNLKPSRVSTLDVIGNAYEYLIKNFAV 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + + +F TP +V  L T LL           P    ++ DPTCG+G  L    N V 
Sbjct: 180 SSGKKSGEFYTPPEVSDLITELL----------EPQPGDSICDPTCGSGSLLIKCGNKVR 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                         +GQE+   T +     M +   +       +  I+ G T+      
Sbjct: 230 TKFDS----KNYALYGQEMNGSTWSRAKMNMFLHGED-------NHKIEWGDTIRNPKLL 278

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K      F    +NPPF       +D      +N +  RF  G+P  + G   F++H+ 
Sbjct: 279 DKNGDLMLFDIVAANPPFSVDQWGHED-----AENDKFNRFRRGIPPKTKGDYAFILHMI 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GR  +++    LF G   S ES+IR+ L++ +L++A++ LP  LF+ T I
Sbjct: 334 ETLKPKT---GRMGVIVPHGVLFRG---STESKIRQQLIDENLLDAVIGLPDKLFYGTGI 387

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + I    K       V  I+A+  +      GK +  ++ D   +I+  Y + EN  
Sbjct: 388 PAVILIFKKEK---VDDNVLFIDASHEF----KPGKNQNQLSADNIAKIVATYKANENVD 440


>gi|325696152|gb|EGD38043.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK160]
 gi|328946725|gb|EGG40863.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1087]
          Length = 513

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 97/537 (18%), Positives = 206/537 (38%), Gaps = 55/537 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+         + S    + + + +       +   ++   
Sbjct: 70  ---GYGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124

Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + ++         +L ++   F+ I+++       ++   YE+ I +F +   +   
Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V     +L                 +YDP CG+GG    +   + +   +  
Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   GQE   +T  +    M+IR +++D     +      ++   DL    + +Y 
Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF               K  +  R+  G P  S+ +  ++ H+ + ++      G+
Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL++  L      SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K 
Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            +++GK   I+A ++   I     K R  +D+  +++ D + + +NG           G+
Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSDEDIKKLADTFEAFQNGNL-----EDVKGF 442

Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              ++     +  FIL       +E      +            L  +  + +    
Sbjct: 443 CASVETAEIAKQDFILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELFTKSHKLED 499


>gi|327490259|gb|EGF22047.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK1058]
          Length = 512

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 191/467 (40%), Gaps = 49/467 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+         + S    + + + +       +   ++   
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124

Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + ++         +L ++   F+ I+++       ++   YE+ I +F +   +   
Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V     +L                 +YDP CG+GG    +   + +   +  
Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   GQE   +T  +    M+IR +++D     +      ++   DL    + +Y 
Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF               K  +  R+  G P  S+ +  ++ H+ + ++      G+
Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL++  L      SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K 
Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            +++GK   I+A ++   I     K R  +D+  +++ D + + +NG
Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSDEDIKKLADTFEAFQNG 434


>gi|124265198|ref|YP_001019202.1| type I restriction-modification system, M subunit [Methylibium
           petroleiphilum PM1]
 gi|124257973|gb|ABM92967.1| type I restriction-modification system, M subunit [Methylibium
           petroleiphilum PM1]
          Length = 528

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/471 (20%), Positives = 174/471 (36%), Gaps = 63/471 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS---- 65
            L   +W  A+ L  +    ++  ++L    L+ +    +  R+ +  ++          
Sbjct: 4   DLKRTLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFQARRTELTARFADPADEYHLD 63

Query: 66  ---------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSD 109
                     ++   + + A   F+         + S   + ++          I + + 
Sbjct: 64  GATPADIAAELEDRDYYREA-NVFWVPEAARWEAIRSAAKQPDIGKRIDDALSLIEAENP 122

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
             K I +     + +      G L ++    S I           V+  +YE+ +  F S
Sbjct: 123 KLKGILDKRFARAQLPD----GKLGELVDLVSTIGFGESAATARDVLGQVYEYFLGMFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +    F TPR +V    A+L                 +YDP CG+GG    +   + 
Sbjct: 179 AEGKRGGQFYTPRSIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEEFIL 227

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G        +   GQE  P T  +    + IR ++ +  R+ +       T +K+ F 
Sbjct: 228 SHG---GKLGDVAIFGQEANPTTWRLAAMNLAIRGIDFNLGREPA------DTFTKNQFP 278

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             R  + L+NPPF                     R+  G P   + +  +L H+ + L+ 
Sbjct: 279 DLRADFILANPPFNIS-------DWWHASLTGDARWHYGDPPQGNANYAWLQHMLHHLKP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGRA IVL++  + +    + E +IR   +E D++E ++ALP  LFF T I   LW
Sbjct: 332 ----GGRAGIVLANGSMSSS--QNNEGQIRAATVEADVVEVMIALPGQLFFNTQIPACLW 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            L   K +  RG+V  I+A  L T I      +  + D+   +I     + 
Sbjct: 386 FLVKDKRQR-RGEVLFIDARKLATMISRV---QCELKDEVIERIAGTVAAW 432


>gi|78189087|ref|YP_379425.1| type I restriction-modification system specificity subunit
           [Chlorobium chlorochromatii CaD3]
 gi|78171286|gb|ABB28382.1| type I restriction-modification system specificity subunit
           [Chlorobium chlorochromatii CaD3]
          Length = 527

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 99/555 (17%), Positives = 193/555 (34%), Gaps = 70/555 (12%)

Query: 1   MTEFTGSAAS--------LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           M +   +           L   +WK A+ L  +    ++  ++L    L+ +  + E   
Sbjct: 1   MAKQKATLRQTQGKQEEPLEKQLWKTADKLRKNIDAAEYKHIVLGLIFLKYISDSFEELY 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           + ++ +           E     A   F+   +   + L S   +      I  F D+A 
Sbjct: 61  AKLQAEEANGADPEDKDEY---KAENVFFVPQDARWNYLQSKAKQPE----IGKFVDDAM 113

Query: 113 AIFEDFD--FSSTIARLE-----KAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164
            + E  +      + ++          L ++      I L         V+ +++E+ + 
Sbjct: 114 DVIEKENASLKGVLPKVFARQNLDPTSLGELIDLVGNIALGDAKARSADVLGHVFEYFLG 173

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +    F TPR VV L   +L                 ++DP CG+GG    + 
Sbjct: 174 EFALAEGKKGGQFYTPRSVVELLVEML-----------EPYKGRVFDPCCGSGGMFVHSE 222

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             V +          +  +GQE    T  +C   + IR ++S   +  ++      +   
Sbjct: 223 TFVTEH---QGKVNDISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNNEG-----SFLN 274

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     +  Y ++NPPF                    GR+  G P   + +  ++ H   
Sbjct: 275 DAHKDLKADYIIANPPFNVSDWGGDLMRS-------DGRWQYGTPPTGNANFAWMQHFIY 327

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G+A +VL+   L +    SGE +IR+ L+EN LI+ IV LP  LF  T I 
Sbjct: 328 HLAP----NGQAGVVLAKGALTS--KTSGEGDIRKALVENGLIDCIVNLPAKLFLNTQIP 381

Query: 405 TYLWIL---------SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
             LW L         +N K  +R  ++  I+  +L   I     + R ++ +   +I   
Sbjct: 382 AALWFLRRDAKFFVSTNGKFRDRSNEILFIDTRNLGHLINR---RTRELSKEDIYKIAST 438

Query: 456 YVSRENGKFSRMLDYRT--FGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           Y +      +          G+   + + +   + ++L       L  D      +    
Sbjct: 439 YHAWRTLPEALNGSAYADILGFCASVAISKVAELDYVLTPGRYVGLPDDEDDFDFAERFT 498

Query: 513 SFWLDILKPMMQQIY 527
           +   ++   + ++  
Sbjct: 499 ALKAELEMQLQEEAQ 513


>gi|227533323|ref|ZP_03963372.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227189042|gb|EEI69109.1| type I site-specific deoxyribonuclease [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 538

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/576 (21%), Positives = 215/576 (37%), Gaps = 73/576 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100
            V +KY  +     +LE          Y  NT  Y +    L +T            ++L
Sbjct: 61  NVTQKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150
              +     + + +    DFS   A ++  +  L    +           +   +     
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+    +RT+Y
Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRTIY 236

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L +   HV D         ++  HGQEL   T+ +    +++  +  D   
Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
               +++ G TLSKD    +   F   + NPP+   W       +   K     RF    
Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF G     E +IR+ LL ++ 
Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              ++I+  Y +R++  K++ +            +  P R     +      L       
Sbjct: 444 VNIQKIVTTYQNRQDVDKYAHVASPAEIKANDYNLNIP-RYVDTFEPEPEIDLNQVKADL 502

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           K      S    I   +  Q+      +    E+ K
Sbjct: 503 KQLDEEISQNEQIFNELASQLVTTQVNDQSKPEAHK 538


>gi|308270633|emb|CBX27245.1| hypothetical protein N47_A12740 [uncultured Desulfobacterium sp.]
          Length = 491

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 106/478 (22%), Positives = 192/478 (40%), Gaps = 55/478 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L +++W  A  L G     DF + I P    +R+    +           A   S 
Sbjct: 2   TKKQLEDYLWGAANILRGMIDAADFKQYIFPLLFFKRISDVWDEEYQT------ALNESG 55

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDN----AKAIFEDFDF 120
            DL+       + F          +     +    L+  I+            +F D  +
Sbjct: 56  NDLDYAGFRENHRFQIPKGCHWEDVRKKTIDVGAALQKAISGIEKANFEMLHDVFGDAQW 115

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++   R+    +L  + ++FS ++L    VP  +M   YE+LI++F  +    A +F T 
Sbjct: 116 TNK-RRMSDEKML-DLIEHFSQMDLTVSNVPHDIMGEGYEYLIKKFADDSGHTAAEFYTN 173

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R VV L T +            P    ++YDPTCG+GG L  ++ H+ + G  ++     
Sbjct: 174 RTVVKLMTQI----------TDPQSAESIYDPTCGSGGILLSSVLHLKERGKEYRNLK-- 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYCL 296
             +GQEL   T A+    M +  ++          I QG TL           K+F   +
Sbjct: 222 -LYGQELNLITSAIARINMFMHNVDEFL-------IVQGDTLESPQILENDELKQFDVIM 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+  K    K  +     N   GR   G P        F  H+   L+      GR+
Sbjct: 274 ANPPYSVKRWNQKKWM-----NDPFGRNIWGTPPQGCADYAFQQHIMKSLKPDT---GRS 325

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            ++     LF       ES+IRR ++E D ++A++ L  +LF+ +++ + L +   +K +
Sbjct: 326 VVLWPHGVLFR----DAESQIRRKMIEEDYVDAVIGLGKNLFYNSSMESCLLVCRMKKPK 381

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
           ER+GK+  I+A       +        +     ++I D Y   +  + F++++  +  
Sbjct: 382 ERKGKIIFIDAKQELRIEKT----NAWLELQHIKKIADAYWKFKEAEGFAKVMSNKEV 435


>gi|324990377|gb|EGC22315.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK353]
          Length = 538

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 103/488 (21%), Positives = 182/488 (37%), Gaps = 64/488 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE---CALEPTRSAVREKYLAF 62
            +A  +   +W  A  L G    +++   ILPF   R L               E++   
Sbjct: 2   STANDITTKLWAMANKLRGTMDASEYKNYILPFMFYRYLSENQDVYLA--QNGLEEFYDV 59

Query: 63  GGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTN-----TRNNLESYIASFSDNAK---- 112
                  +    ++    Y    EY+   L +         ++ +    SF   AK    
Sbjct: 60  IDDEEQEDYLEDISSNLGYAIKPEYTWGRLVAKIENHRIKASDFQDMFDSFETQAKRNPM 119

Query: 113 ------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                  +F D +   T    +  E+A  L  I           D     ++ ++YE+LI
Sbjct: 120 AEQDFANVFSDINLGDTRLGSSTNERAKALNDIVLMIHEFSFK-DESGRDILGDVYEYLI 178

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   +   +F TP +V  +   L+         +       +YDPT G+G  L   
Sbjct: 179 GQFAANAGKKGGEFYTPHEVSQILAKLVTVDAKENDDQ-----FRVYDPTMGSGSLLLTV 233

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +       K    +  +GQEL   T+ +    +++  +          N+++G TL 
Sbjct: 234 QKEL----PEGKREGSVAFYGQELNTTTYNLARMNLMMHGVNYRNM-----NLKRGDTLD 284

Query: 284 KDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            D    ++        F   ++NPP+ +KWE       K     +  RF  G+   S   
Sbjct: 285 TDWPFAEKDGIQLPLKFDAVVANPPYSQKWE------IKSIDRSKDSRFKFGVAPASKAD 338

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H    L       G  AIVL    LF G A   E +IR+ +++ +L+ A++ LP 
Sbjct: 339 YAFILHGLYHL----ESTGTMAIVLPHGVLFRGAA---EGKIRKKIIDENLLHAVIGLPA 391

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+I T + +   RK       V  I+    +      GK +  +  D   +I++ 
Sbjct: 392 NLFYGTSIPTCVLVFKGRKARGECSDVLFIDGASDFEK----GKNQNKLTADNITKIIET 447

Query: 456 YVSRENGK 463
           Y  RE+  
Sbjct: 448 YHEREHVD 455


>gi|121610070|ref|YP_997877.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121554710|gb|ABM58859.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 518

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 102/490 (20%), Positives = 199/490 (40%), Gaps = 68/490 (13%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   +  +L     ++K A+ L G+ + +D+  V L    L+ +  A E   + +   
Sbjct: 1   MAQNDNNGGNLGFEAELFKTADKLRGNMEPSDYKHVALGLIFLKYISDAFEARHAQLL-- 58

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111
                 +    +    +A   F+   E   S L +   ++++ + I          +++ 
Sbjct: 59  ---AEDAAAAEDKDEYLADNIFWVPREARWSHLQANAKQSSIGTLIDDAMRAIERDNESL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +         + ++    +L ++    SGI L+  +     V+  +YE+ + +F    
Sbjct: 116 KGVLPKDYARPALNKV----MLGELIDLISGIALNEGNDKSKDVLGRVYEYFLGQFAGAE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TPR VV     +L                 +YDP CG+GG    +   VA+ 
Sbjct: 172 GKRGGEFYTPRSVVRTLVEML-----------EPYTGRVYDPCCGSGGMFVQSEKFVAEH 220

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE    T  +    + +R ++SD + +         +  KD     
Sbjct: 221 GGRIG---DIAIYGQESNYTTWRLAKMNLAVRGIDSDIKWNNEG------SFHKDELRDL 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + L+NPPF               +  E  R+  G P   + +  +L H+ + L    
Sbjct: 272 KADFILANPPFNISDWGG-------GRLREDVRWAFGAPPAGNANYAWLQHIFHHLSPH- 323

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G A +VL++  +      SGE +IR+ ++E ++++ +VALP  LF+ T I   LWIL
Sbjct: 324 ---GFAGVVLANGSM--SSQQSGEGDIRKAMIEANVVDCMVALPGQLFYSTQIPACLWIL 378

Query: 411 SNR---------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-- 459
           S           K  +RRG+V  I+A  +   +      RR + +++  +I   Y +   
Sbjct: 379 SKDRSNGLVKKTKLRDRRGEVLFIDARKMGVLVDRT---RRELTNEEIGRIAATYHAWRG 435

Query: 460 --ENGKFSRM 467
             + G++S +
Sbjct: 436 EADAGEYSDI 445


>gi|324993827|gb|EGC25746.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK405]
 gi|324994852|gb|EGC26765.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK678]
 gi|327474702|gb|EGF20107.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus sanguinis SK408]
          Length = 512

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 96/537 (17%), Positives = 206/537 (38%), Gaps = 55/537 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+         + S    + + + +       +   ++   
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSKIGTVLDKAMREIEE--DNSSL 124

Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + ++         +L ++   F+ I+++       ++   YE+ I +F +   +   
Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V     +L                 +YDP CG+GG    +   + +   +  
Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   GQE   +T  +    M+IR +++D     +      ++   DL    + +Y 
Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF               K  +  R+  G P  S+ +  ++ H+ + ++      G+
Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL++  L      SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K 
Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNK- 391

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            +++GK   I+A ++   I     K R  +++  +++ D + + +NG           G+
Sbjct: 392 -KQKGKTLFIDARNMGEMIDR---KHRDFSNEDIKKLADTFEAFQNGNL-----EDVKGF 442

Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              ++     +  FIL       +E      +            L  +  + +    
Sbjct: 443 CASVETAEIAKQDFILTPGRYVGIEEKEDDGEPFEEKMDRLTTELSELFTKSHKLED 499


>gi|194333150|ref|YP_002015010.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271]
 gi|194310968|gb|ACF45363.1| N-6 DNA methylase [Prosthecochloris aestuarii DSM 271]
          Length = 547

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 129/578 (22%), Positives = 223/578 (38%), Gaps = 85/578 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M    G+  SL ++IW+ A  + G      +   ILP    +RL    +   + +  +  
Sbjct: 1   MVNNNGNRKSLESWIWEAACSIRGAKDAPKYKDYILPLIFTKRLCDVFDDELNRIAAEVG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLESY---IASFSD 109
           +   +     +  K+    FY            +S+    S      + +Y   IA  + 
Sbjct: 61  SRKKAFQLARADHKLV--RFYLPLIPDDPEQPVWSVIRKLSDRIGEGVTTYMRAIARENP 118

Query: 110 NAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             + I +  DF++T    R      L  + +  S   L  D V   ++   YE+LIR+F 
Sbjct: 119 LLQGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLDDVEADIIGKSYEYLIRKFA 178

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               + A +F TP +V  + +  L           P     +YDPTCG+GG L      +
Sbjct: 179 EGGGQSAGEFYTPPEVGTIMSRAL----------QPEQGMEIYDPTCGSGGLLVKCEIAM 228

Query: 228 ADCGSHHKI---------------------------PPILVPHGQELEPETHAVCVAGML 260
            +     K                               L   GQE  PET A+    M+
Sbjct: 229 EEQRREIKEGGHSCPPLHSELNGYPLCNGGLENPPSFAPLKLFGQEYIPETWAMANMNMI 288

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKE 315
           I  +E          I+ G T     F  K+     F   ++NP + + W       E +
Sbjct: 289 IHDMEG--------QIEIGDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEAD 335

Query: 316 HKNGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           + N EL RF  G G P  S     ++ H+   L    N  GRAAIVL +  +  G   +G
Sbjct: 336 YDNDELDRFPAGAGFPGKSSADWGWVQHMHASL----NDTGRAAIVLDTGAVSRGSGNAG 391

Query: 374 ---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              E  +R+W ++ND+IE+++ LP +LF+ T     +  L+  K E+R+ KV L+NA+ +
Sbjct: 392 TNKEKNVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNKAKPEDRKSKVFLVNASRI 451

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFI 489
           +      G  +  I D+  ++I+D  +  +  +  SR++D+         +  P R    
Sbjct: 452 FEK----GDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVDHAELKKNDYNI-SPSRYIHT 506

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +      +   +                L+ +++Q+ 
Sbjct: 507 GEAETYRLIPEIVKELNAIEEEARETDKALRNILKQLG 544


>gi|169346894|ref|ZP_02865842.1| type I restriction-modification system, M subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169296953|gb|EDS79077.1| type I restriction-modification system, M subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 514

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 98/493 (19%), Positives = 193/493 (39%), Gaps = 69/493 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++L + +W  A DL G+   ++F   IL     R L   +E   + + E+       
Sbjct: 9   EQQSNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSYEE 68

Query: 66  NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAI 114
             + E   +           ++   ++    L +     +      E  I + +++    
Sbjct: 69  AWEDEELREALKEELVNDIGYFIEPKFLFDKLLAKIETGDFDIEILEEAINNITESTLGQ 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             + +F      ++            ++ L+ K+    + I+   D     ++ + YE+L
Sbjct: 129 ESEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +   + + +GQE    T+ +    ML+  ++         NI+   TL
Sbjct: 241 VS----------REAKVRMFYGQEKTSTTYNLARMNMLLHGVK-----YSDFNIKNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLM 340
                   +F   ++NPP+  KW  D   ++ E       RF     L   S     F+ 
Sbjct: 286 ENPQHGDLKFEAIVANPPYSAKWSGDDKFLDDE-------RFSAYGKLAPKSKADFAFIQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ + L       G  A+VL    LF G A   E  IR+ L+E  ++++A++ LP ++FF
Sbjct: 339 HMIHHL----EDNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFF 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +   +K  +    +  I+A++ +      GK + ++ D    +I++ Y  R
Sbjct: 392 GTSIPTVILVF--KKNRKNADNIMFIDASNEFEK----GKNQNVLRDRDVEKIVETYKKR 445

Query: 460 ENGKFSRMLDYRT 472
           EN      +    
Sbjct: 446 ENVDKYAYVATME 458


>gi|329903168|ref|ZP_08273390.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
 gi|327548463|gb|EGF33135.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
          Length = 475

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/519 (17%), Positives = 180/519 (34%), Gaps = 73/519 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              +   +W  A+ L  +    ++  ++L    ++ +    +  R+ +  K+        
Sbjct: 2   LDDIKKTLWATADKLRANMDAAEYKHIVLGLIFVKYISDPFQTRRAELTHKFADTSDDYF 61

Query: 66  ----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108
                         +         F+        TL +   + ++   I          +
Sbjct: 62  LGEVDQAQLHAELEDRDYYREVNVFWVPEAARWETLRAQAKQADIGKRIDDALSLIETEN 121

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLI 163
              K I +       +      G L ++        F             ++  +YE+ +
Sbjct: 122 PKLKGILDKRYARVQLPD----GKLGELVDLVSQIGFGESTDTAKNHARDLLGQVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F S   +    F TP  +V+   ++L                 +YDP CG+GG    +
Sbjct: 178 GQFASAEGKRGGQFYTPASIVNTLVSVLAPHHG-----------QVYDPCCGSGGMFVQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +   G        +  +GQE  P T  +    + IR ++ +  +      +   T  
Sbjct: 227 EKFIEAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGK------EPDDTFV 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           ++     R  + L+NPPF                     R+  G P   + +  +L H+ 
Sbjct: 278 RNQHPDLRADFVLANPPFNIS-------DWWHGSLEGDPRWVYGTPPQGNANYAWLQHML 330

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GRA IVL++  + +    + E +IRR ++E D +E ++ALP  LFF T I
Sbjct: 331 YHLKPT----GRAGIVLANGSMSSS--QNTEGDIRRAMVEADKVEVMIALPGQLFFNTQI 384

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG- 462
              LW L   K    +G+V  I+A  L + I      +     D   +I     +  +G 
Sbjct: 385 PACLWFLVKEKRAR-QGEVLFIDARKLGSMISRV---QCEFTVDVIERIAGTVAAWRDGG 440

Query: 463 -KFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLE 499
            +++ +      GY R + +        +L + G++   
Sbjct: 441 AEYADVA-----GYCRSVTLEEIAEHGHVLSRGGMSEPR 474


>gi|168211072|ref|ZP_02636697.1| type I restriction-modification system, M subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170710874|gb|EDT23056.1| type I restriction-modification system, M subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 514

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 212/546 (38%), Gaps = 70/546 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++L + +W  A DL G+   ++F   IL     R L   +E   + + E+       
Sbjct: 9   EQQSNLQSNLWNIANDLRGNMDASEFKNYILGLIFYRYLSENVESRANKLLEEDGVSYEE 68

Query: 66  NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAI 114
             + E   +           ++   ++    L +     +      E  I + +++    
Sbjct: 69  AWEDEELREALKEELVNDIGYFIEPKFLFDKLLAKIETGDFDIEILEEAINNITESTLGQ 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             + +F      ++            ++ L+ K+    + I+   D     ++ + YE+L
Sbjct: 129 ESEEEFDHLFDDMDLKSTKLGKDVKSRSELIAKVMGKIAQIDFRFDNSEIDILGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +   + + +GQE    T+ +    ML+  ++         NI+   TL
Sbjct: 241 VS----------REAKVRMFYGQEKTSTTYNLARMNMLLHGVK-----YSDFNIKNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLM 340
                   +F   ++NPP+  KW +D   ++ E       RF     L   S     F+ 
Sbjct: 286 ENPQHGDLKFEAIVANPPYSAKWSRDDKFLDDE-------RFSAYGKLAPKSKADFAFIQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ + L       G  A+VL    LF G A   E  IR+ L+E  ++++A++ LP ++FF
Sbjct: 339 HMIHHL----EDNGTMAVVLPHGVLFRGAA---EGVIRKHLIEQRNVLDAVIGLPANIFF 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +   +K  +    +  I+A++ +      GK + ++ D    +I++ Y  R
Sbjct: 392 GTSIPTVILVF--KKNRKNADNIMFIDASNEFEK----GKNQNVLRDRDVEKIVETYKKR 445

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           EN  K++ +            +  P  +    ++  +  +E     ++L    +     +
Sbjct: 446 ENVDKYAYVATMEEVKENDYNLNIPRYVDTFEEEEEIDIIEVQKNIKELDKEIEELKKSL 505

Query: 519 LKPMMQ 524
              + +
Sbjct: 506 EADLKE 511


>gi|197249396|ref|YP_002149446.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213099|gb|ACH50496.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 496

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 191/464 (41%), Gaps = 53/464 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L   +W  AE L G    +D+ + I P    +RL        +   E +       
Sbjct: 2   SNKKLEELLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYNEAMELHEG----- 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       + F   SE +   + +T  N    +++    I   +     +F D  ++
Sbjct: 57  -DAEYAAMPMFHRFNIPSEAAWEKVRNTSKNIGEAIQNALRLIEVNNPRLHGVFGDAQWT 115

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 116 NK-ERLPDH-LLADLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 173

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T ++                T YDPTCGTGG L +A   V D  +  +    + 
Sbjct: 174 TVVHLMTRIMGL----------KPGETAYDPTCGTGGMLLNA---VMDLRARGEEWRSVH 220

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLS 297
            +GQE+   T A+    M +  +E         ++ +G TL++  F      K+F    +
Sbjct: 221 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLAEPKFIENDRLKQFDVIFA 273

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+  K          +      GR   G+P        F  H+   L+      GRAA
Sbjct: 274 NPPYSIK-----KWNRDKFAADPYGRNLYGVPPQGCADYAFYTHIIKSLKPDT---GRAA 325

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K  E
Sbjct: 326 MLWPHGVLFR----DSEQTIRKQVVESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKPAE 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           R+ KV  IN  +  T  R        ++ D    + + Y S EN
Sbjct: 382 RKNKVLFINGVEHVTRERA----HSRLSKDDLAVLCEAYFSPEN 421


>gi|158315560|ref|YP_001508068.1| N-6 DNA methylase [Frankia sp. EAN1pec]
 gi|158110965|gb|ABW13162.1| N-6 DNA methylase [Frankia sp. EAN1pec]
          Length = 564

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 100/503 (19%), Positives = 158/503 (31%), Gaps = 90/503 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L   +WK A+ L G      +   +L    L+ +  A    R  +R+  LA G   
Sbjct: 14  TMAQLRETLWKTADKLRGSMDAAQYKDFVLVLIFLKYVSDAFAERREQIRQDVLADGIDE 73

Query: 67  IDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAI 114
              E F+           F+         + +      +   + +        +     +
Sbjct: 74  SRAEEFLDDVDEYAGQGVFWVPGRARWEHIAANAKSAGIGELLNAAMDAVMKTNPALTGV 133

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---------------------- 152
                F+           L ++               +                      
Sbjct: 134 LPRI-FNGEG---VDQHRLGELVDLLGDARFTGHRATERPPSTPTGEDGALFGESAAGVP 189

Query: 153 ---------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     V+  +YE+ + RF     +   +F TP  VV L   +L            
Sbjct: 190 TEAATRPARDVLGEVYEYFLERFARAEGKRGGEFYTPASVVRLLVEVL-----------E 238

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +YDP CG+GG    A   V            +  +GQE    T  +    + I  
Sbjct: 239 PYEGRVYDPCCGSGGMFVQAEKFVVAHRG-LTHSGDIAVYGQESNERTWRLAKMNLAIHG 297

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +  D         +   T   D     R  + L+NPPF               +  +  R
Sbjct: 298 ITGDLSA------RWDDTFRNDRHPDLRADFILANPPFNMS---------DWARTVDDQR 342

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +  G P   + +  +L H+  KL      G   A   + S        SGE EIR  L+E
Sbjct: 343 WRYGTPPTGNANFAWLQHIIAKLGSRGTAGVVMA---NGSM---SSKQSGEGEIRAALVE 396

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------EERRGKVQLINATDLWTSIRN 436
            DL+  ++ALP  LF  T I   LW  +  K         ERRG+   I+A D+ T I  
Sbjct: 397 ADLVACMIALPPQLFRTTQIPACLWFFAKDKGQLGARWLAERRGETLFIDARDMGTMIDR 456

Query: 437 EGKKRRIINDDQRRQILDIYVSR 459
                RI+ D    +I D Y + 
Sbjct: 457 TE---RILTDGDLEKITDTYRAW 476


>gi|21228300|ref|NP_634222.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906762|gb|AAM31894.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 505

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 98/506 (19%), Positives = 177/506 (34%), Gaps = 54/506 (10%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            +     +WK A+ L  +    ++  ++L    LR +  A E       ++         
Sbjct: 1   MSDFEKQLWKAADKLRKNIDAAEYKHIVLGLIFLRYISDAFEELYEK-LQQGEGEYAGAD 59

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKAIFEDFDF 120
             +     A   F+  +      L S   +       +N    I   +   + +      
Sbjct: 60  PEDRDEYKAENVFFVPAISRWPYLQSEAKKPDIGKSVDNAMDAIEKENPLLRGVLPKVFA 119

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
              +        L  +    S + L    +    V+ +++E+ +  F     +    F T
Sbjct: 120 RGNL----DPTNLGGLIDLVSNVALGDAKSRSADVLGHVFEYFLGEFALAEGKKGGQFYT 175

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   +L                 ++DP CG+GG    +   VAD          
Sbjct: 176 PRSVVELLVEML-----------EPYNGRVFDPCCGSGGMFVQSEKFVADHQGKIN---D 221

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE    T  +    + IR ++S   +  ++      +   D+    +  Y ++NP
Sbjct: 222 ISIYGQESNQTTWRLAKMNLAIRSIDSSQVKWNNEG-----SFLNDVHKDLKADYVIANP 276

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF                  + GR+  G+P   + +  ++ H    L       G+A  V
Sbjct: 277 PFNDSDWSGD-------LLRKDGRWKYGVPPAGNANYAWIQHFLYHLGPS----GQAGFV 325

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
           L+   L +    SGE +IR+ L+E  L++ IV LP  LF  T I   LW LS  K     
Sbjct: 326 LAKGSLTS--KSSGEGDIRKELVEARLVDCIVNLPPKLFLNTQIPASLWFLSRNKANGKH 383

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
             R  ++  I+A ++   I     + R  + +  +QI   Y    N +     D + F  
Sbjct: 384 RNRTDEILFIDARNMGHLINR---RTREFSPEDIQQIAGTYHKWRNPEG-NYEDVKGFC- 438

Query: 476 RRIKVLRPLRMSFILDKTGLARLEAD 501
               + R   + ++L       L  D
Sbjct: 439 NSAPIERVRELGYVLTPGRYVGLPDD 464


>gi|315222636|ref|ZP_07864525.1| putative type I restriction-modification system, M subunit
           [Streptococcus anginosus F0211]
 gi|315188322|gb|EFU22048.1| putative type I restriction-modification system, M subunit
           [Streptococcus anginosus F0211]
          Length = 496

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 109/528 (20%), Positives = 200/528 (37%), Gaps = 46/528 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L  ++W +A  L        + + I P    +RL    +     VR ++      +
Sbjct: 6   TIDELEKYLWGSAVLLRTHVDAGAYKQYIFPLLFFKRLSDVYDEECEKVRAEFGE-EALD 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +     ++   + +N    ++S               A+  +    IF D  +++   R
Sbjct: 65  WEENHQFQIPDGAHWNDVR-NVSQDVGKAIIEAFHKIEAANPEKLHGIFGDASWTNK-NR 122

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L    LL  + ++FS   L     P   +   YE+LI++F  +    A++F T R VV+L
Sbjct: 123 LPDR-LLKDMLEHFSTKTLSIANCPADELGQGYEYLIKQFADDSGHTAQEFYTNRTVVNL 181

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L           P    ++YDPTCG+ G L  A+ ++   G   +    L  +GQE
Sbjct: 182 MIEML----------KPQPSESIYDPTCGSAGMLISAVAYLKQQGLEWR---NLSIYGQE 228

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFG 302
           +   T A+    +L+  +          NI    TL    FT     ++F   L+NPP+ 
Sbjct: 229 IVTLTSAIARMNLLLHGV-------QDFNIVNADTLKTPAFTDHAKLQQFDLILANPPYS 281

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                         ++ + GR   G P        F  H+   L+      GR AI+   
Sbjct: 282 ISQWD-----RTAFESDKYGRNFLGTPPQGRADYAFFQHI---LKSLDEKTGRCAILFPH 333

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E ++R  L+++DL+E ++ L  +LF+ + +   + I   RK   R G+V
Sbjct: 334 GVLFRNE----EKDMREKLVKSDLVECVIGLGPNLFYNSPMEACIIICRTRKAVNREGQV 389

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVL 481
             INA +  T        +  + D    +I   Y   E +G  ++++  +        + 
Sbjct: 390 LFINALNEVTR----KNAQSYLEDKHIEKIAKAYDKYESDGDIAKVVTIKDIAKNDYSLS 445

Query: 482 RPLRMSFILDKTGLARLEADITWR-KLSPLHQSFWLDILKPMMQQIYP 528
            PL +    ++    R   +     K +    S   + +  M+     
Sbjct: 446 IPLYIQTSSEEQEDDRTIQECYSDWKEAAEMASRHFESINKMIGGDGN 493


>gi|208780344|ref|ZP_03247685.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
 gi|208743712|gb|EDZ90015.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
          Length = 512

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 186/540 (34%), Gaps = 62/540 (11%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + +  + 
Sbjct: 1   MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAEL--QS 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112
             +       E         F+  ++   S L +      +          I   +++ K
Sbjct: 59  EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L                 ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P  S+ +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPASNANYAWIQHFLYHLAPT-- 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL+   L +    SGE +IR+ L+E +L++ IV LP  LF  T I   LW + 
Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI- 378

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K   +   +  I+A +    I    K     +DD   +I   Y + +    S +    
Sbjct: 379 --KRGRKTKDILFIDARNKGHLINRITK---EFSDDDITEIAQTYHNWKLSCHSELDSKS 433

Query: 472 T-----FGYRRIKV-LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                  G+ +         ++++L       LE        +    S    + + M Q+
Sbjct: 434 HKYEDIKGFCKSASYEEVAELNYVLTPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQE 493


>gi|331018716|gb|EGH98772.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 576

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 98/550 (17%), Positives = 192/550 (34%), Gaps = 68/550 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T  + +   L   +W  A+ +  +    ++  ++L    L+ +  +    R+ +  ++  
Sbjct: 50  TATSITLQDLEKTLWATADKMRANMDPAEYKHIVLGLIFLKYISDSFAGRRAELERRFAD 109

Query: 62  FGGS------------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105
                               E         F+        ++ +   + ++   I     
Sbjct: 110 ASDDYYLGGDDPTYLAAELEERDYYKEVNVFWVPGVARWESIRANAKQVDIGKRIDDALA 169

Query: 106 ---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEH 161
              + +   K I +     + +      G L ++    S I    D      ++  +YE+
Sbjct: 170 DIEAENPQLKNILDKRYARAQLPD----GKLGELVDMISIIGFSSDANKARDLLGQVYEY 225

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F S   +    F TP  +V    A+L                 +YDP CG+GG   
Sbjct: 226 FLGQFASAEGKRGGQFYTPASIVKTLVAVLNPHHG-----------KVYDPCCGSGGMFV 274

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +   +   G        +  +GQE  P T  +    + IR ++ +  R+ +       T
Sbjct: 275 QSEKFIEAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDFNLGREPA------DT 325

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              +  +  R  + L+NPPF                     R+  G P   + +  +L H
Sbjct: 326 FIYNQHSDLRADFVLANPPFNVS-------DWWHGSLEGDPRWVYGTPPQGNANYAWLQH 378

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L+      GRA IVL++  +      + E +IRR ++E D++E +VALP  LFF T
Sbjct: 379 MLFHLKSS----GRAGIVLANGSM--SSTQNTEDDIRRAMVEADVVEVMVALPGQLFFNT 432

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
            I   LW L+ +K     G+V  I+A  L +++      +  + D    +I     +   
Sbjct: 433 QIPACLWFLAKQKVTRP-GEVLFIDARKLGSNVSRV---QIELLDSDIERIAQTVANWRG 488

Query: 461 -----NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                 G+ +  +D   F  R + +    +   +L        EA     +         
Sbjct: 489 VPLDVGGEIAEYVDVAGFC-RSVTLAEIAKHGHVLTPGRYVGAEAVEDDDEAFAEKMQNL 547

Query: 516 LDILKPMMQQ 525
             +L   M +
Sbjct: 548 TALLGEQMAK 557


>gi|258509976|ref|YP_003175639.1| Type I restriction modification system protein HsdMI, M subunit
           [Lactobacillus rhamnosus Lc 705]
 gi|257152817|emb|CAR91788.1| Type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 540

 Score =  314 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 122/577 (21%), Positives = 210/577 (36%), Gaps = 73/577 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100
            V +KY  +     +LE          Y  NT  Y +    L +T            ++L
Sbjct: 61  NVTQKYAQYMNPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYATLIGKIQAHTFALDDL 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150
              +     + + +    DFS   A ++  +  L    +           +   +     
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLIHH 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + YE+LI +F S+  + A +F TPR V  +   ++              +RT+Y
Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQR----NAGDNQVRTIY 236

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L +   HV D       P ++  HGQEL   T  +    +++  +  D   
Sbjct: 237 DPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTFNLARMNLMLHGVSYDDM- 288

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
               +++ G TLSKD    +   F   + NPP+   W       +   K     RF    
Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF G     E +IR+ LL ++ 
Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              ++I+  Y +R++  K++ +            +  P R     +      L+      
Sbjct: 444 VNIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIP-RYVDTFEPEPEIDLDQVKADL 502

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           K      S        +  Q+      +    E+   
Sbjct: 503 KQLDEAISHHEQAFNELASQLVVTQVNDQSKPEAHNE 539


>gi|291534512|emb|CBL07624.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis M50/1]
          Length = 805

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 115/534 (21%), Positives = 215/534 (40%), Gaps = 61/534 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T+   ++  L N +++    L G     +F   + P    +R+    +       E    
Sbjct: 309 TKEETTSRQLFNHLFEACNILRGPINQDEFKSYVTPVLFFKRISDVYDEEYEEALEF--- 365

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLST--LGSTNTRNNLESY---IASFSDN-AKAIF 115
              S  D+E       +SF        +   + S +    +      I   + +    +F
Sbjct: 366 ---SGGDVEYAEAEDMHSFVIPDGCHWNDVRMVSQDVGKAIVKAMTGIEKANPDTLSGVF 422

Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             FD ++   + +     L  + ++ S I++        +M + YE LI++F     + A
Sbjct: 423 SSFDDATWTDKNKLTDERLKNLIEHMSLIKVGNKNYSADIMGDSYEFLIKKFADMSKKNA 482

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR +V L   LL           P    T+YDP CGTGG L +A++H+     ++
Sbjct: 483 GEFYTPRTIVKLMVNLL----------DPKPGETVYDPACGTGGMLIEAIHHM-----NN 527

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGK 290
                    GQE    T A+    + +   +          ++QG TL   LF      K
Sbjct: 528 DRLAYGRIFGQENNLSTSAIARMNLYLHGAK-------DVQVKQGDTLRNPLFLEKGKLK 580

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   L+NPPFG K          + ++ + GR   G P  S     +L H+   ++   
Sbjct: 581 TFDCVLANPPFGMK-----KWGAGQFESDQYGRNMWGCPSDSSADFAWLQHMIKSMDSK- 634

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR A+VL    LF+      E EIR  L+ +D +EA++ L + +F+ T ++  +  L
Sbjct: 635 --NGRCAVVLPQGVLFHSGK---EGEIREQLVRSDKLEAVITLASGVFYSTGVSACILFL 689

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLD 469
           +N+K  + +G++ LI+ T+++T  R     + II+ D  + +  +Y    +  +  +++ 
Sbjct: 690 NNKKEHKHKGRICLIDGTEIYTPQRA----QNIISPDNVKTLYKLYTDYVDVIEKCKIVT 745

Query: 470 YRTFGYR------RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
                        +  + +  + +   +K  LA  EA    RK     +   ++
Sbjct: 746 IDDVEKGGFELSVKKYIEQKAKEAIPHEKVLLAYYEALTKVRKSEEKMRKLLIE 799


>gi|168207083|ref|ZP_02633088.1| type I restriction-modification system, M subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170661530|gb|EDT14213.1| type I restriction-modification system, M subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 514

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/493 (20%), Positives = 196/493 (39%), Gaps = 69/493 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++L + +W  A DL G+    +F   IL     R L   +E   + + E+       
Sbjct: 9   EQQSNLQSNLWNIANDLRGNMDANEFKNYILGLIFYRYLSENVESRANRLLEEDNMTYAE 68

Query: 66  NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAI 114
             + E   +           +Y   ++    L S     +      E  I + +++    
Sbjct: 69  AWEDEELREALQEELVNDIGYYIEPKFLYHNLLSKIETGDFDIEMLEEAINNITESTLGE 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             + +F      ++            ++ L+ K+    + I+         ++ + YE+L
Sbjct: 129 DSEEEFDHLFDDMDLKSTKLGKDVKSRSDLIAKVMGKIAQIDFSFSNSEIDILGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTMGKTDL--------KNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +   +   +GQEL   T+ +    ML+  +     R    +I+   TL
Sbjct: 241 VS----------REANVRTFYGQELTSTTYNLARMNMLLHGV-----RYSDFDIKNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLM 340
                   RF   ++NPP+  KW  D+  ++ E       RF     L   S     F+ 
Sbjct: 286 ENPQHIDLRFEAVVANPPYSAKWSGDEKFLDDE-------RFSAYGKLAPKSKADFAFVQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ ++L    +  G  A+VL    LF G A   E  IR++L+E  ++++A++ LP ++FF
Sbjct: 339 HMIHQL----DNNGTMAVVLPHGVLFRGAA---EGVIRKYLIEKRNVLDAVIGLPANIFF 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +   +K  +    +  I+A++ +      GK + ++ D    +I++ Y +R
Sbjct: 392 GTSIPTVILVF--KKNRKNTDNIMFIDASNEFEK----GKNQNLLRDSDVDKIIETYKNR 445

Query: 460 ENGKFSRMLDYRT 472
           EN      +    
Sbjct: 446 ENVDKYAYVSSME 458


>gi|220908526|ref|YP_002483837.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
 gi|219865137|gb|ACL45476.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
          Length = 540

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/558 (18%), Positives = 190/558 (34%), Gaps = 72/558 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
               +  SL   +WK A+ L  +    ++  ++L    L+ +  A +   + +      +
Sbjct: 7   NDKHNNESLEQKLWKAADKLRKNIDAAEYKHIVLGLIFLKYISDAFDKLHAKLVAGEGEY 66

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDN-AKAI 114
            G++   +     A   F+   +   S L     +  +          I   +    K I
Sbjct: 67  AGAD-PEDPDEYKAENVFFVPPDARWSVLQGQAKQPTIGQKVDEAMEAIERENPKLLKGI 125

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV------------------MS 156
                    +        L  +        L                           + 
Sbjct: 126 LPKVYGQQKL----DPTALGGLIDMIGSTNLAKAEAESDGQLVLETEPIAEPRRQQDLLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            +YE+ + +F     +    F TP  VV +   +L                 ++DP CG+
Sbjct: 182 QVYEYFLGQFALAEGKKGGQFYTPESVVKVLVEML-----------EPYKGRVFDPCCGS 230

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG    +   V     H      +  +GQE    T+ +C   + IR ++    R   +  
Sbjct: 231 GGMFVQSEKFV---SHHQGRLNDISIYGQESNETTYKLCRMNLAIRGIDGSNIRWNPEG- 286

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +  KD     +  + ++NPPF                  + GR+  G+P + + + 
Sbjct: 287 ----SFLKDAHKDLKADFVIANPPFNDSDWGGD-------LLRQDGRWQYGVPPVGNANF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H    L       G A  VLS+  L      SGE EIR+ L++ DL++ IV LPT 
Sbjct: 336 AWVQHFLYHL----ALTGAAGFVLSNGSL--SSNTSGEGEIRKALVQADLVDCIVMLPTQ 389

Query: 397 LFFRTNIATYLWILSN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LF+ T I   LW LS      K  +R+G+V  I+A++L   +     + R   ++  ++I
Sbjct: 390 LFYNTGIPACLWFLSRYKNGNKNRDRKGEVLFIDASELGYMVNR---RNRAFAEEDIQKI 446

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
              Y   +    S   D + F  +   +    + +F+L       +  ++          
Sbjct: 447 AGTYHEWK-RDGSTYQDIKGFC-KSATLAEIEKHNFVLTPGRYVGIPDEVESEVSFEETM 504

Query: 513 SFWLDILKPMMQQIYPYG 530
           +     L   M++     
Sbjct: 505 AALTAELAAQMKEAAELD 522


>gi|257883803|ref|ZP_05663456.1| DNA-methyltransferase [Enterococcus faecium 1,231,501]
 gi|257819641|gb|EEV46789.1| DNA-methyltransferase [Enterococcus faecium 1,231,501]
          Length = 538

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 197/496 (39%), Gaps = 62/496 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64
            + + + + +W  A  L G    +++   ILPF   R L    +   +    E+Y     
Sbjct: 2   SNTSEITSKLWAMANKLRGTMDASEYKNYILPFMFYRYLSENQDDYLKKNGLEEYYEVTD 61

Query: 65  SNIDLESFVKVAGYSFYNTSE-YSLSTLGST-----NTRNNLESYIASFSDNAK------ 112
                +   +++    Y  +  Y+   L           ++ +    SF+ NAK      
Sbjct: 62  PEEKEDYLQEISRGIGYAIAPEYTWEQLVKKIENHQIKASDFQDLFDSFNANAKRNPLAE 121

Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
                +F D +   T       E+A  L  I    +      D     ++ ++YE+LI +
Sbjct: 122 DDFANVFSDINLGDTRLGSNTNERAKALNDIVLMINDFVFK-DEAGHDILGDVYEYLIGQ 180

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +   +F TP +V  +   ++                 +YDPT G+G  L     
Sbjct: 181 FAANAGKKGGEFYTPHEVSQVLAKIVTSD-----ANVEDNQFRVYDPTMGSGSLLLTVKK 235

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +            +  +GQEL   T+ +    +++  +        + N+++  TL  D
Sbjct: 236 EL----PAGDKSGSVDFYGQELNTTTYNLARMNLMMHGIN-----YQNMNLRRADTLDAD 286

Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336
               +        +F   ++NPP+  KW  D   V++E    +  RF G G+   S    
Sbjct: 287 WPFAEKEGMQIPLKFDAVVANPPYSAKW--DIKDVDRE----KDTRFKGYGVAPASKADY 340

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L+      G  AIVL    LF G A   E +IR+ +++N+L++A++ +P +
Sbjct: 341 AFVLHGLYHLDKS----GTMAIVLPHGVLFRGAA---EGKIRKNIIDNNLLDAVIGMPAN 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+I T + +    +   +   +  I+A+  +      GK +  ++DD   +I++ Y
Sbjct: 394 LFYGTSIPTTVLVF-KGREARKTKDILFIDASSEFVK----GKNQNKLSDDNINKIIETY 448

Query: 457 VSRENGKFSRMLDYRT 472
             RE+ +    +    
Sbjct: 449 EKREDVEKYAHVATLE 464


>gi|227510763|ref|ZP_03940812.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227189765|gb|EEI69832.1| type I site-specific deoxyribonuclease [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 540

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 124/577 (21%), Positives = 213/577 (36%), Gaps = 73/577 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100
            V  KY  +     +LE          Y  NT  Y +    L +T            ++L
Sbjct: 61  NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150
              +     + + +    DFS   A ++  +  L    +           +   +     
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLIHH 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+    +RT+Y
Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRTIY 236

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L +   HV D       P ++  HGQEL   T+ +    +++  +  D   
Sbjct: 237 DPAVGSGSLLLNVGQHVQD-------PSLVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
               +++ G TLSKD    +   F   + NPP+   W       +   K     RF    
Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF G     E +IR+ LL ++ 
Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTGIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              ++I+  Y +R++  K++ +            +  P R     +      L+      
Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPAEIKENDYNLNIP-RYVDTFEPEPEIDLDQVKADL 502

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           K      S        +  Q+      +    E+   
Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQVNDQSKLEAHNE 539


>gi|219851734|ref|YP_002466166.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
 gi|219545993|gb|ACL16443.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
          Length = 513

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/479 (21%), Positives = 188/479 (39%), Gaps = 54/479 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L +++W+ A  + G+     +   ILP   L+RL    +     +   Y   G  ++  +
Sbjct: 15  LESWLWEAACKIRGEIDAPKYKDYILPLIFLKRLSDVFDDEAKKMERTY---GNRDLVEK 71

Query: 71  SFVKVAGY-SFYNT--SEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTI 124
              +      FY    S +      ST     L      IA  +   +   +  DF++T 
Sbjct: 72  ILAEDHQLVRFYLPPESRWDAIAQKSTGLGELLTDAMRSIARENPKLQGSIDIVDFNATA 131

Query: 125 --ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              R+     L  +        L    V   ++ + YE+L+R+F     + A +F TPR+
Sbjct: 132 AGQRIIPDDSLRTLIGVMGKYRLGLADVEPDIIGHAYEYLLRKFAEGSGQSAGEFYTPRE 191

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L   +L           P     +YDP CG+GG L     +  +   +      L  
Sbjct: 192 VALLMARIL----------DPKPGEEVYDPCCGSGGLLIKCAMYFRERYHNDPEVAPLQF 241

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLS 297
            GQE +  T A+      I  +E          I    T+    F  +      F    +
Sbjct: 242 CGQENQHSTFAMAKMNTFIHDME--------AQIALQDTMRFPQFLNRDGSLRLFDIVTA 293

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NP + + +E      +K ++     RF  G P  S     ++ H+   L+      GR A
Sbjct: 294 NPMWNQDFE------QKIYETDTYNRFTIGYPPSSSADWGWIQHMFASLKK----NGRMA 343

Query: 358 IVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +VL +  +  G   +G   E +IR+   E+DL+EA++ LP +LF+ T     + +++  K
Sbjct: 344 VVLDTGAVSRGSGNTGKNRERDIRKNFAEHDLVEAVILLPENLFYNTTAPGIILVINQGK 403

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
               +G++ L+NA+ L+      G+ +  I D+   Q+  I+   +   + S ++    
Sbjct: 404 --LHKGEILLVNASKLFQK----GRPKNFIPDECIAQVAGIFRDWKAVDEISTIVSAID 456


>gi|146291272|ref|YP_001181696.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens CN-32]
 gi|145562962|gb|ABP73897.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens CN-32]
          Length = 506

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 105/487 (21%), Positives = 177/487 (36%), Gaps = 54/487 (11%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT     +   +   +W   +   G      +   IL    L+ +    +     +  +Y
Sbjct: 1   MTSTNQINQDDINKAVWAACDTFRGVISADTYKDFILTMLFLKYISDVYKDEYKKLVAQY 60

Query: 60  L---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
                   + +  + FV   G SF++  E              L +   +     K +F+
Sbjct: 61  GDNPELIHAMMSKQRFVLPEGASFWDLYEKRYEAGNGERIDKALHAIEEANGSKLKNVFQ 120

Query: 117 DFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171
           D  F+        +K  LL  + ++F    L+  T       ++ N YE+LI+ F +   
Sbjct: 121 DISFNTDRLGQEKQKNDLLRHLLEDFGKDILNLSTERVGSLDIIGNAYEYLIKHFAAGSG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A ++ TP +V  L    L           P     + DP  G+G  L      V    
Sbjct: 181 ATAGEYYTPPEVSTLLATAL----------EPVEGDQICDPCTGSGSLLLKCGAMVRKNS 230

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
              K        GQE    T A+    M +   +       +  I+ G T+   L   K 
Sbjct: 231 GSKK----YALFGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTIRNPLLKEKD 279

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F    +NPPF             +  N   GRF  G+P  + G   F+ H+   
Sbjct: 280 GNGLLHFDVVTANPPFSLD-----KWGHDDASNDPYGRFRRGIPPKTKGDYAFITHMIET 334

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR  +V+    LF     S E +IR+ L+E +L++ ++ LP  LFF T I  
Sbjct: 335 LKPET---GRMGVVVPHGVLFR---ASSEGKIRKQLIEENLLDTVIGLPEKLFFGTGIPA 388

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
            + I    KT++    V  I+A+  +      GK +  + D+  ++I+D Y +RE+    
Sbjct: 389 AILIFKKHKTDK---NVLFIDASREF----KPGKNQNQLTDENIQKIIDTYKARESVDKY 441

Query: 466 RMLDYRT 472
             L    
Sbjct: 442 AYLASFD 448


>gi|51598167|ref|YP_072358.1| type I site-specific deoxyribonuclease LldI chain hs... [Yersinia
           pseudotuberculosis IP 32953]
 gi|186897391|ref|YP_001874503.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51591449|emb|CAH23120.1| putative type I site-specific deoxyribonuclease LldI chain hs
           [Yersinia pseudotuberculosis IP 32953]
 gi|186700417|gb|ACC91046.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 507

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 105/542 (19%), Positives = 201/542 (37%), Gaps = 58/542 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+        +   +W   +   G      +   IL    L+ +    +      + +Y 
Sbjct: 1   MSNMID-QDRINRVLWGVCDTFRGTISPDTYKDFILTMLFLKYISDVWQDHYDGYKAQYG 59

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---- 113
                    +  E FV     SFY   +              L +   +     K     
Sbjct: 60  DEPELIEEMMKNERFVLPKDASFYALYKRRSEAGNGERIDVALHAIEEANGTKLKDGSKS 119

Query: 114 IFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGS 168
           +F++  F+        +K  +L ++ ++F+  EL+          V+ N YE+LI +F +
Sbjct: 120 VFQEISFNTNKLGDEKQKNLILKQLLEDFTHPELNLKPSRVGGLDVIGNAYEYLIGKFAA 179

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A ++ TP +V  L  ALL           P    ++ DPTCG+   L      VA
Sbjct: 180 NSGQKAGEYYTPPEVSDLLAALL----------DPQPGESICDPTCGSASLLMKCGKWVA 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +             +GQE    T ++    M +   +       +  I+ G T+      
Sbjct: 230 EKYHS----KNYELYGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLL 278

Query: 289 GKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K      F    +NPPF  +     D  + +       RF  GLP  + G   F++H+ 
Sbjct: 279 DKNANLMLFDVVTANPPFSLEKWGIDDVSDDQF-----SRFRRGLPPKTKGDYAFILHMI 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      GR  +V+    LF G   S E +IR+ L++ +L++A++ LP  LFF T I
Sbjct: 334 ETMKPKT---GRMGVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFFGTGI 387

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + I    K       V  I+A+  +    N GK +  ++ +   +I+  Y   +N +
Sbjct: 388 PAAILIFKKSK---VDDNVLFIDASREF----NSGKNQNQLSTENIAKIVKTYRDGDNVE 440

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            ++ +   +        +  P  +    ++T +  + A    ++L        +++ K +
Sbjct: 441 KYAYLASLQEIRDNDYNLNIPRYVDTFEEETEIDLMTARAERKQLQAQLADLEVEMTKYL 500

Query: 523 MQ 524
            +
Sbjct: 501 RE 502


>gi|323491151|ref|ZP_08096339.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Vibrio brasiliensis LMG
           20546]
 gi|323314616|gb|EGA67692.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Vibrio brasiliensis LMG
           20546]
          Length = 538

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 103/464 (22%), Positives = 184/464 (39%), Gaps = 54/464 (11%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  + +       + +D++ F +
Sbjct: 21  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQKMID---DGQEAFVDMKEFYQ 77

Query: 75  VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127
                FY   +S +S         N    +++    I   + + K    D  FS     +
Sbjct: 78  Q-DNIFYLEESSRWSFVQKHAKQDNIAVVIDTALASIEKANPSLKGALPDNYFSRQDLEV 136

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +K   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+ VV L 
Sbjct: 137 KKLASLIDTIENIDTLADECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSVVTLL 196

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           T +L                 +YDP CG+GG    ++  V       K    +  +GQEL
Sbjct: 197 TEML-----------EPFQGKIYDPACGSGGMFVQSLKFVKQHEGRTK---DIAIYGQEL 242

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    + IR L  +         +   T   D     +  Y ++NPPF     +
Sbjct: 243 TSTTYKLAKMNLAIRGLSGNLGE------RPADTFFADQHKDLKADYIMANPPFNISQWR 296

Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           D      E++  +  RF G   P   + +  +++H+ +KL      G   A   + S   
Sbjct: 297 D------ENELTKDPRFSGYRTPPTGNANYGWILHMLSKLSETGTAGFVLA---NGSMSS 347

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-------RR 419
           N    SGE EIR+ L+END++E ++ALP  LF+ T I   +W ++  K          R 
Sbjct: 348 N---TSGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNKQANSSKGYRPRE 404

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +   I+A ++ T      K    +  D    I D Y +  +  
Sbjct: 405 KETLFIDAREMGTMTSRVHK---ELTVDDIALIADTYHAWRSDD 445


>gi|237755861|ref|ZP_04584457.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691972|gb|EEP60984.1| type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 506

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 101/511 (19%), Positives = 179/511 (35%), Gaps = 57/511 (11%)

Query: 1   MTEFTGSAAS--LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M + T    +  L   +WK A+ L  +    ++  V+L    L+ +  A E     +++ 
Sbjct: 1   MAKKTKVKNNEPLEAKLWKAADTLRKNIDAAEYKHVVLGLVFLKYISDAFEKLYEELKK- 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNA 111
                      +    +A   FY   +   S +        +          I   +   
Sbjct: 60  ----DPYADPEDKDEYLAKNVFYIPEKARWSEIKKHAKNPEIGKILDEAMDEIERENPQL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +         I  L     L  +   F  IEL         ++  ++E+ + +F    
Sbjct: 116 KGVLPKVYSKGNIDPLS----LGGLIDLFDNIELEAVKEKSADILGYVFEYFLGQFALAE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP+ VV L   ++                 ++DP CG+GG    +   V   
Sbjct: 172 GKKGGQFYTPKSVVELLVEMI-----------QPFKGRVFDPCCGSGGMFVQSEKFVLAH 220

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                    +  +GQE    T  +C   + IR ++S   +  S+      +L  D     
Sbjct: 221 QGKI---DDISIYGQESNQTTWKLCKMNLAIRHIDSSQVKWNSEG-----SLLNDAHKDL 272

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y L+NPPF +K                  R+  G+P   + +  ++ H    L    
Sbjct: 273 KADYILANPPFNQKEWG-------REYLENDPRWQYGIPPAGNANYAWIQHFIYHLSNKG 325

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G   A +  +S          E EIR+ L+E DL+E IV LP  LF    I   LW +
Sbjct: 326 KAGFVLAKISLTS------KQKEEYEIRKNLIEADLVECIVNLPGKLFLNAPIPVCLWFI 379

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           +  K  +R+G++  I+A D+   I     + R++  +  R+I D Y   + G      D 
Sbjct: 380 NKNK--KRKGQILFIDARDMGELINR---RLRVLRPEDIRKIADTYHEWQKGSDGNYQDI 434

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             F  +   +     + + L       L  +
Sbjct: 435 VGFC-KSASLEEVRNLDYALAPGRYVGLPEE 464


>gi|260102294|ref|ZP_05752531.1| type I restriction-modification system [Lactobacillus helveticus
           DSM 20075]
 gi|260083891|gb|EEW68011.1| type I restriction-modification system [Lactobacillus helveticus
           DSM 20075]
          Length = 540

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 196/497 (39%), Gaps = 71/497 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-------CALEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTMQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSEWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSLS--TLGSTNTR---------NNL 100
            V +KY  +     +LE          Y  NT  Y +    L +T            ++L
Sbjct: 61  NVTQKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIKPQALYTTLIGKIQAHTFALDDL 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150
              +     + + +    DFS   A ++  +  L    +           +   +     
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + YE+LI +F S+  + A +F TPR V  +   ++    +A  K+    +RT+Y
Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQRNAGDKQ----VRTIY 236

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L +   HV D         ++  HGQEL   T+ +    +++  +  D   
Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
               +++ G TLSKD    +   F   + NPP+   W       +   K     RF    
Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF G     E +IR+ LL ++ 
Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDNVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSRENGK 463
              ++I+  Y +R++  
Sbjct: 444 ANIQKIVTTYQNRQDVD 460


>gi|189501455|ref|YP_001960925.1| type I restriction-modification system, M subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189496896|gb|ACE05444.1| type I restriction-modification system, M subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 527

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 183/496 (36%), Gaps = 80/496 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63
              + +  W   +   G      +   IL    L+ +    +      +++Y        
Sbjct: 7   QKDINSAAWSACDTFRGVVDPAQYKDYILVMLFLKYISDVWQDHYEEYQKQYGDDDIRIR 66

Query: 64  GSNIDLESFVKVAGYSFYNTS----------EYSLSTLGSTNTRNNLESYIASFSDNAKA 113
                    + V   +  N              +  +L    +  N+   I    D+ + 
Sbjct: 67  RKLERERFVLPVVKLTEKNDETGEEAVLDEFPATYYSLYERRSAANIGELINIVLDHIED 126

Query: 114 --------IFEDFDFS---STIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYE 160
                   +F + DF+   +     ++   L ++ ++F    + + P  V + V+ N Y 
Sbjct: 127 SNKVKLEGVFRNIDFNSEANLGKTKDRNRRLKQLLEDFHKPQLNMKPSLVSEDVIGNTYI 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI RF S+  + A +F TP  V  L   L            P     + DP CG+GG L
Sbjct: 187 YLIERFASDSGKKAGEFFTPFKVSELVAKL----------ADPRPGDRICDPACGSGGLL 236

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A   V D              GQE    T A+C   M +   +       S  I+   
Sbjct: 237 IKAAKEVGDRN--------FALFGQESNGSTWALCRMNMFLHSFD-------SARIEWCD 281

Query: 281 TLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           TL+  L        +F+  ++NPPF       ++      ++ +  RF  G+P  S G  
Sbjct: 282 TLNSPLLVENDRLMKFNCVVANPPFSLDKWGAEN-----AESDQYNRFWRGVPPKSKGDW 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ H+    E+     GR A+V+    LF G A   E  IR+ ++E +L++A++ LP +
Sbjct: 337 SFISHMV---EIALEKEGRVAVVVPHGVLFRGAA---EGRIRQKMIEENLLDAVIGLPGN 390

Query: 397 LFFRTNIATYLWILSNRKTEERRG---------KVQLINATDLWTSIRNEGKKRRIINDD 447
           LF  TNI   + +    +    +           V  ++A+  +      GK +  ++D+
Sbjct: 391 LFQTTNIPVAILVFDRSREGTTKDTKSTKGENRDVLFVDASREFV----SGKNQNTLSDE 446

Query: 448 QRRQILDIYVSRENGK 463
           Q  +I+  Y  R   +
Sbjct: 447 QIAKIMRTYRERTEVE 462


>gi|229550755|ref|ZP_04439480.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315866|gb|EEN81839.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
          Length = 540

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 121/577 (20%), Positives = 209/577 (36%), Gaps = 73/577 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRS 53
           M+E T  A+ L + +W  A+ L G    +++   +L     R L                
Sbjct: 1   MSEKTTQASQLESALWNAADVLRGKMDASEYKNYLLGLIFYRFLSEKTLTTFSDWAGETE 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTR---------NNL 100
            V  KY  +     +LE          Y  NT  Y +    L +T            ++L
Sbjct: 61  NVTRKYAQYMDPQFELEGVSVQPSLVEYLQNTLGYLIQPQALYTTLIGKIQAHTFALDDL 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKN---------FSGIELHPDTV 150
              +     + + +    DFS   A ++  +  L    +           +   +     
Sbjct: 121 SQALHDLEQSTQNLSSAQDFSGLFADVDLSSNKLGSSLQQRNQTISDTMLALNAIDLVHH 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + YE+LI +F S+  + A +F TPR V  +   ++              +RT+Y
Sbjct: 181 QGDVLGDAYEYLIAQFASDSGKKAGEFYTPRQVSDIIAQIVTYQR----NAGDNQVRTIY 236

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L +   HV D         ++  HGQEL   T+ +    +++  +  D   
Sbjct: 237 DPAVGSGSLLLNVGQHVQDPN-------LVSYHGQELNTTTYNLARMNLMLHGVSYDDM- 288

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
               +++ G TLSKD    +   F   + NPP+   W       +   K     RF    
Sbjct: 289 ----HLRNGDTLSKDWPVDEPYLFDAVVMNPPYSAHW-------DNSDKRLSDPRFRDYG 337

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G   IVL    LF G     E +IR+ LL ++ 
Sbjct: 338 VLPPKSKADFAFLLHGFYHLQEH----GTMGIVLPHGVLFRGAK---EGKIRQKLLLDNR 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+AI+ LP ++F  T+I T + IL   KT      V  I+A+  +   +N    +  +  
Sbjct: 391 IDAIIGLPANIFHSTSIPTLIMILKKHKT---TDDVLFIDASREFEKDKN----QNKLTA 443

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              ++I+  Y +R++  K++ +            +  P R     +      L+      
Sbjct: 444 ANIQKIVTTYQNRQDVDKYAHVASPVEIKENDYNLNIP-RYVDTFEPEPEIDLDQVKADL 502

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           K      S        +  Q+      +    E+   
Sbjct: 503 KQLDEEISQNEQAFNELASQLVTTQINDQSKPEAHNE 539


>gi|317130966|ref|YP_004097248.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522]
 gi|315475914|gb|ADU32517.1| N-6 DNA methylase [Bacillus cellulosilyticus DSM 2522]
          Length = 488

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 112/472 (23%), Positives = 196/472 (41%), Gaps = 48/472 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L  ++W +A  L G     D+ + I P   L+RL    +       +     G   
Sbjct: 5   SLEKLERYLWGSANFLRGHIDAGDYKQFIFPLLFLKRLCDVYD---EEYNDSLNTLGEDF 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            +   F+   G+  +N     ++ +G T  +  +     +     + IF D  +++   R
Sbjct: 62  DENHRFIIPKGH-HWNDIRKKVNNIG-TAIQTAMAEIEKANIGRLEGIFGDAQWTNK-DR 118

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L  + LL  + ++FS   L    V +  +   YE+LI++F  +    A++F + R +V L
Sbjct: 119 LPDS-LLKDLIEHFSQQTLSLQNVSEDELGQAYEYLIKKFADDSGHTAQEFYSNRTIVRL 177

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T LL           P    ++YDPTCG+GG L  +  H+ + G  ++    L   GQE
Sbjct: 178 MTELL----------EPNPKESVYDPTCGSGGMLLLSALHLKEKGKEYR---SLRLFGQE 224

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG 302
           +   T ++    M +  +E          I +G TL    F      ++F   L+NPP+ 
Sbjct: 225 INLITSSIAKMNMFLHGIEDFE-------ILRGDTLENPAFIKNDKLRQFDIVLANPPYS 277

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K         +  +    GR   G P  S     FL H+   L+      GR AI+   
Sbjct: 278 IKRWN-----RERWETDPYGRNIYGTPPKSRADYAFLQHIIKSLKADT---GRCAILFPH 329

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             LF       E E+R  L+++D+IE I+ L ++LF+ + +   +      K E+R+GK+
Sbjct: 330 GVLFR----DAEQEMRENLVKSDVIECILGLGSNLFYNSPMEACVIFCRTNKKEDRKGKI 385

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
             INA +     R        I+ +   +I  +Y   ++   FS +++    
Sbjct: 386 LFINAINQVRRERTMS----YIDPEHIEEIKGVYDEFKSINGFSNVVEVDEV 433


>gi|307608918|emb|CBW98318.1| putative type I site-specific deoxyribonuclease LldI chain protein
           [Legionella pneumophila 130b]
          Length = 533

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 99/487 (20%), Positives = 178/487 (36%), Gaps = 70/487 (14%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---------GGSNI 67
              +   G      +   IL    L+ +    +      +++Y                +
Sbjct: 28  AACDTFRGTISADTYKDFILTMLFLKYISDVWQDHFDEYQKQYGDEPELIHEMMKNERFV 87

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------------SFSDNAKAIF 115
             E  +K    S  +  + +   L            I                DNAK++F
Sbjct: 88  IPEIILKNEDGSVRDQFQATFKNLWERRHEPGNGERIDLCLHAIEEANGTKLRDNAKSVF 147

Query: 116 EDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEV 170
           +D  F+        +K  +L  + ++F+  EL+          ++ N YE+LI+ F +  
Sbjct: 148 QDISFNTDKLGEEKQKNTILRHLLEDFAKPELNLRPSRVAGLDIIGNAYEYLIKHFAASG 207

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L   LL           P    ++ DP CG+G  L      + + 
Sbjct: 208 GQKAGEFYTPPEVSSLMATLL----------DPQPGDSICDPACGSGSLLMKCGRLIREN 257

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        GQE    T ++    M +   +       +  I+ G T+        
Sbjct: 258 HH----QKNYALFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDS 306

Query: 291 R-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +     F    +NPPF            +E +N   GRF  G+P  + G   F++H+   
Sbjct: 307 KGHLMLFDIVTANPPFSLD-----KWGHEEAENDHFGRFRRGIPPKTKGDYAFILHMIET 361

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR  +V+    LF G   S E +IR+ L+E +L++ ++ LP  LF+ T I  
Sbjct: 362 LKPKT---GRMGVVVPHGVLFRG---SSEGKIRQKLIEENLLDTVIGLPEKLFYGTGIPA 415

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
            + I   +K++    KV  I+A   +      GK +  ++ D   +I++ Y  R++    
Sbjct: 416 AILIFKKQKSD---DKVLFIDAAKEF----KSGKNQNQLSQDNIDKIIETYKQRQSVDRY 468

Query: 466 RMLDYRT 472
             L    
Sbjct: 469 AYLASLD 475


>gi|75907382|ref|YP_321678.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
 gi|75701107|gb|ABA20783.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
          Length = 516

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 131/549 (23%), Positives = 221/549 (40%), Gaps = 55/549 (10%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAV 55
           M E  G+   SL N+IW  A  + G  +   +   ILP    +RL    +         V
Sbjct: 1   MGERNGNGDKSLENWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAEKV 60

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGSTNTRNNLESY---IASFSDN 110
             +  AF    +D             N  +  +S+    S      L  Y   IA  +  
Sbjct: 61  GSRAKAFKLVAMDHNLVRFYLPLQPQNPDDPVWSVIRKLSDKIGEKLTDYLREIAKANPL 120

Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              I    DF++T    R      L  + +  S   L    V   ++   YE+LIR+F  
Sbjct: 121 LNGIINRVDFNATTHGQRDLDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE 180

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP++V  +   ++           P    T+YDP CG+ G L      + 
Sbjct: 181 GSGQSAGEFYTPKEVGLIMAKIM----------QPEPGMTIYDPCCGSAGLLIKCQLVLQ 230

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
           +     +    L  +GQE  P T A+    M+I  +E          I+ G T     F 
Sbjct: 231 ESQGATEKFAPLQLYGQEYTPNTWAMANMNMIIHDMEG--------KIEIGDTFRHPKFM 282

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFLMHL 342
                 +F   ++NP + +KW       EK++   ELGRF  G G P  S     ++ H+
Sbjct: 283 QAGKLAQFERVVANPMWNQKW-----FTEKDYDGDELGRFPKGAGYPGSS-ADWGWVQHI 336

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNG---RAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
              L+      G+AAIVL +     G      + E E+R+W +E DLIE ++ LP +LF+
Sbjct: 337 LASLDKT----GKAAIVLDTGAASRGSGNANKNKEKEVRKWFVEQDLIEGVIYLPQNLFY 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS- 458
            T+    L  L+  K +ER+GK+  INA+ ++      G  +  I D++  +I + +++ 
Sbjct: 393 NTSAPGILLFLNRAKPKERQGKLFFINASLVFAK----GDPKNYIPDEEIERIANTFLTW 448

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           RE  KFS ++      +    +  P R   I ++     +   +   ++     +    +
Sbjct: 449 REEEKFSLIVYKDKIAHNDYNI-SPSRYIHITEEEDFRPIAEILEELEVLEKEAAETNKL 507

Query: 519 LKPMMQQIY 527
           L  ++ +  
Sbjct: 508 LMKVLGRYQ 516


>gi|314934744|ref|ZP_07842103.1| type I restriction-modification system, M subunit [Staphylococcus
           caprae C87]
 gi|313652674|gb|EFS16437.1| type I restriction-modification system, M subunit [Staphylococcus
           caprae C87]
          Length = 518

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 114/548 (20%), Positives = 209/548 (38%), Gaps = 74/548 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+    +F   IL     R L   +E T + +  +       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSARLLAEDNITYSE 68

Query: 66  NIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114
            ++ E +        +    F    E   S L +       E  I   S+  K +     
Sbjct: 69  AMNNEDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFE--IEDLSNAIKNVENSTR 126

Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158
                      F+D D +S  +RL         L+ K+  N S +      +   ++ + 
Sbjct: 127 GHESEDDFIHLFDDMDLNS--SRLGNTNAARTKLIGKVMMNISTLPFVHSDLEIDMLGDA 184

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G 
Sbjct: 185 YEYLIGQFAANAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                      +GQE    T+ +    ML+  +        +  I+ 
Sbjct: 237 LLLRVGREAKVRN----------YYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIEN 281

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL      G++F   ++NPP+  KW  +   ++ E  +         L   S     F
Sbjct: 282 GDTLEDPAHRGEQFDAVVANPPYSAKWSAEPSFLDDERFSDY-----GKLAPKSKADFAF 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           + H+   L+      G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +L
Sbjct: 337 IQHMIYHLDDE----GTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + +   +K  +    V  I+A+  +      GK +  + D+   +I++ Y 
Sbjct: 390 FFGTSIPTCVLVF--KKCRKADDDVVFIDASQSFEK----GKNQNHLTDEDVEKIVETYS 443

Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            RE   K+S +            +  P  +    ++  +   +     + +     +   
Sbjct: 444 KRETIDKYSYVASLDEIKENDYNLNIPRYVDTFEEEEPIDLDQVQQQLKDIDKEIANVES 503

Query: 517 DILKPMMQ 524
           +I + + +
Sbjct: 504 EINEYLKE 511


>gi|32455519|ref|NP_862271.1| hypothetical protein pRV500_p03 [Lactobacillus sakei]
 gi|24461246|gb|AAN61993.1|AF438419_3 HsdM [Lactobacillus sakei]
          Length = 510

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 107/554 (19%), Positives = 201/554 (36%), Gaps = 61/554 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T     + + +W+ A+ L G    + +  V+L    L+ +  +      ++ +   
Sbjct: 1   MAKKTAEL-KIEDALWQAADQLRGSMDASQYRNVVLGLIFLKYVSDSFNEKYESLIK--- 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKA 113
                    +  +  A   F+   E     + S      +   I          +D  K 
Sbjct: 57  -SDYPEDAEDRDMYTAENIFWLPKEARWDVIASDAKTPEIGETIDKAMEAIERENDQIKG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + ++     L  +    S I++  +    + V+  +Y++ +  F ++  +
Sbjct: 116 VLPKNYASPDLDKV----RLGGVIDLISNIKVGDEESRKNDVLGRVYDYFLSNFAAQEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR +V     +L                 +YDP  G+GG    +   V +   
Sbjct: 172 NGGEFYTPRSIVRTLVEML-----------EPYKGRIYDPAAGSGGMFVQSEEFVREH-- 218

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
              +   L  +GQE  P T  +    + IR +++D          QG T + DL  G+RF
Sbjct: 219 -QGVISDLSVYGQEANPTTWKLAKMNLAIRGIDNDFGPH------QGDTFTNDLHKGRRF 271

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y L+NPPF  K            K  +  R+  G+P   + +  ++ H+ +KL      
Sbjct: 272 DYILANPPFNLKEWGAD-------KLQDDSRWVYGVPPEGNANYAWIEHMISKLAPD--- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A  VL++  L        E  IR+ +LE D I+AIVALP  +F+ T I   LW +  
Sbjct: 322 -GKAGFVLANGALSTSTKE--EYAIRKAILEADKIDAIVALPGQMFYSTQIPVSLWFVDM 378

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            K      +R G+   I+A +L        K       +   +I D Y +          
Sbjct: 379 NKASSDERKRNGETLFIDARELGFMADRTHK---EFAREDIAKIADTYHAYRGTNDQVYE 435

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           D   F  +   +       ++L       L      +     ++     +   +  Q   
Sbjct: 436 DVPGF-SKAAMIEEIRENDYVLTPGRYVGLAER---QDDGEPYEEKMARLTSELSDQFKK 491

Query: 529 YGWAESFVKESIKS 542
               E  +++++K 
Sbjct: 492 SAELEEQIRDALKE 505


>gi|99078524|ref|YP_611782.1| type I restriction-modification system, M subunit [Ruegeria sp.
           TM1040]
 gi|99035662|gb|ABF62520.1| type I restriction-modification system; M subunit [Ruegeria sp.
           TM1040]
          Length = 499

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 182/470 (38%), Gaps = 53/470 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63
           + + +    W   +   G    + +   +L    L+ +    +  +++    Y       
Sbjct: 5   TQSEINKAAWGACDTFRGVVDPSIYKDYVLTMLFLKYVSDVWKDHKASYAAHYPDSPELV 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF--S 121
            + ++ E+F      SF                   L +   +     + +F+D  F  +
Sbjct: 65  AAMMERETFKLPETASFDALHGRRHEPGNGERIDKALHAIEEANGSKLRDVFQDISFNSN 124

Query: 122 STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 +K  +L  + ++F+   ++L P  V +  ++   YE+LI RF +   + A +F 
Sbjct: 125 KLGDEEQKNDILRHLLEDFAKTALDLRPSRVGNLDIIGGAYEYLISRFAATAGKKAGEFY 184

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L   L+           P     + DPTCG+   L      + + GS      
Sbjct: 185 TPAEVSELMARLV----------DPQPGDDICDPTCGSASLLMKCGRLIREGGSKA---- 230

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFH 293
                GQE    T A+    + +   E       +  I+ G T+            + F 
Sbjct: 231 -YALFGQEAIGSTWALAKMNLFLHGEE-------NHQIEWGDTIRNPKLRTSDDMLRHFD 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +       +  +  RF  G+P  + G   F++H+   L+      
Sbjct: 283 VVVANPPFSLDKWGVES-----AEADKFARFRRGIPPKTKGDYAFILHMIETLKPKT--- 334

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A+V+    LF G   S E +IR  L+E++L++A++ LP  LFF T I + + +    
Sbjct: 335 GRMAVVVPHGVLFRG---SSEGKIRHKLIEDNLLDAVIGLPEKLFFGTGIPSAILVFRKD 391

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           K ++    V  ++A+  + +    G  +  ++     +I+  + +R+  +
Sbjct: 392 KADDS---VLFVDASREFVA----GTNQNALDMTLIEKIVATHQTRQTVE 434


>gi|332285463|ref|YP_004417374.1| Type I restriction-modification system, M subunit [Pusillimonas sp.
           T7-7]
 gi|330429416|gb|AEC20750.1| Type I restriction-modification system, M subunit [Pusillimonas sp.
           T7-7]
          Length = 520

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 95/541 (17%), Positives = 199/541 (36%), Gaps = 67/541 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65
             +   +W  A+ L  +    ++  ++L    ++ +  +    R+A+ +++   G     
Sbjct: 3   QDIKKTLWAAADKLRANMDAAEYKHLVLGLIFVKYISDSFAAHRAALTKRFADQGDDYVL 62

Query: 66  ---------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSD 109
                    +   E     A   F+         L +   + ++          I + + 
Sbjct: 63  PDADEALIASELEERDYYTAANIFWVPEAARWEALRAAAKQPDIGKRIDDALTAIEAENP 122

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGS 168
             K I +     + +      G L ++    S I    D      ++  +YE+ + +F S
Sbjct: 123 KLKGILDKRYGRAQLPD----GKLGELVDMISTIGFGGDANTARDILGQVYEYFLGQFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +    F TP  +V+   A+L                 +YDP CG+GG    +   + 
Sbjct: 179 AEGKKGGQFYTPASIVNTLVAVLAPHKG-----------QVYDPCCGSGGMFVQSEKFIE 227

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
             G +      +  +GQE  P T  +    + IR ++ +  ++ +       T +++   
Sbjct: 228 AHGGNIG---DVSIYGQESNPTTWRLAAMNLAIRGIDFNLGKEPA------DTFTRNQHP 278

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             R  + L+NPPF                     R+  G P   + +  +L H+ + L+ 
Sbjct: 279 DLRADFILANPPFNIS-------DWWHGSLEGDPRWQYGDPPKGNANYAWLQHMLHHLKP 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRA IVL++  + +    + E  IR  +++ D++E ++ALP  LFF T I   LW
Sbjct: 332 T----GRAGIVLANGSMSSS--QNNEGVIRAAMVDADVVEVMIALPGQLFFNTQIPACLW 385

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSR 466
            L+ +K  +R+G+V  I+A  +   I      +  ++D    +I +   +   E    + 
Sbjct: 386 FLAKQK--KRKGEVLFIDARKMGRMISRV---QAELDDAAITRIAETVAAWRGEVEDGAT 440

Query: 467 MLDYRTF-GYRRIKV--LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           + +Y+   G+ R             +     +   E +      +   Q     + + M 
Sbjct: 441 ITEYQDVPGFCRSVPLAEIAQHGHVLTTGRYVGAEEVEDDDEAFAEKMQKLTEKLGEQMA 500

Query: 524 Q 524
           +
Sbjct: 501 K 501


>gi|37680390|ref|NP_934999.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199137|dbj|BAC94970.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 509

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 117/528 (22%), Positives = 211/528 (39%), Gaps = 54/528 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + + P    +RL        +   E +       
Sbjct: 15  NKNKLEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLSDVYLEEYNEALELHEG----- 69

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       + F    E S   + +T  +    +++    I + ++    +F D  ++
Sbjct: 70  -DAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQWT 128

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 129 NK-ERLPDH-LLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 186

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T ++                + YDPTCGTGG L +A   V D  S  +    + 
Sbjct: 187 TVVHLMTRIM----------KLKPGESAYDPTCGTGGMLLNA---VMDLRSQGEEWRGVH 233

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
            +GQE+   T A+    M +  +E         ++ +G TL    F      K+F    +
Sbjct: 234 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVMRGDTLGDPKFIENDQLKQFDVIFA 286

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+  K         ++      GR   G+P        F  H+   L+      GRAA
Sbjct: 287 NPPYSIK-----KWNREKFAADPYGRNMYGVPPQGCADYGFYTHIIKSLKPDT---GRAA 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++     LF       E  IR+ ++E+D+IEA++ L  +LF+ + + + + +L+  K  E
Sbjct: 339 MLWPHGVLFR----DSEQAIRKQVIESDIIEAVIGLGPNLFYNSPMESCVVVLNCNKPFE 394

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYR 476
           R+ K+  IN  +  T  R        ++DD    + + Y   + +G  + ++D       
Sbjct: 395 RKNKILFINGVEHVTRERA----HSRLSDDDLDVLCEAYFKPDSHGDIAALVDLDDIREN 450

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +  +  PL +    D        A   W+      +     + + + +
Sbjct: 451 QHNLSIPLYVQAQTDTEVHDIEHAIEEWKVSRVQLKKQTNKLFQSLAE 498


>gi|89902764|ref|YP_525235.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89347501|gb|ABD71704.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 514

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 97/540 (17%), Positives = 204/540 (37%), Gaps = 55/540 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +WK A+ L  +    ++  V+L    L+ +  + E   + ++     + G++ + +
Sbjct: 15  LEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELFTKLQGGAGDYAGADPEDK 74

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
              K     F+   +   S L     + ++          I   + + K +     F+  
Sbjct: 75  DEYKAE-NVFFVPPQARWSFLLGKAKQPDVGSHVDAAMDAIEKENPSLKGVLPKV-FARQ 132

Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              L+ A  L  +      I L         V+ +++E+ +  F     +    F TPR 
Sbjct: 133 --NLDPAS-LGGLIDLVGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPRS 189

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   +L                 ++DP CG+GG    +   V +          +  
Sbjct: 190 IVELLVVML-----------EPYKGRVFDPCCGSGGMFVQSEKFVTEHQGRIN---DISI 235

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            GQE    T  +    + IR +++   +  ++      +   D     +  + ++NPPF 
Sbjct: 236 FGQESNQTTWRLAKMNLAIRGIDASQVKWNNEG-----SFLNDAHKDVKADFIIANPPFN 290

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +          + GR+  G+P   + +  +L H  + L       GRA +VL+ 
Sbjct: 291 VSDWNGE-------LLRKDGRWQYGVPPTGNANFAWLQHFNHHLAP----NGRAGVVLAK 339

Query: 363 SPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTDLFFRTNIATYLWILS--NRKTEERR 419
             L +    SGE +IR+ + ++ +LI+ IV LP  LF  T I   LW ++        R+
Sbjct: 340 GALTS--KSSGEGDIRKAMVVDGNLIDCIVNLPAKLFLNTQIPAGLWFMNRARNNGHPRK 397

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-I 478
           G++  I+A +L   I     + R ++D+  +++  +Y +   G+ S   D    G+   +
Sbjct: 398 GEILFIDARNLGHLINR---RTRELSDEDIQKVASVYHAWRTGE-SEYAD--EKGFCASV 451

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            + R   + ++L       L  +      +    S   ++   ++++          + +
Sbjct: 452 PLARVAELDYVLTPGRYVGLPDEEDDFDFAERFASLKAELEAQLLEEAELNQAIAENLAK 511


>gi|297568980|ref|YP_003690324.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924895|gb|ADH85705.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 538

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 107/554 (19%), Positives = 207/554 (37%), Gaps = 70/554 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             S    +W+ A+ L G  + +++  V+L    L+ +    E  +  +  +    G  + 
Sbjct: 25  TKSFEQTLWETADRLRGTVESSEYKHVVLSLIFLKFVSDKFEQRKRELIAE----GQGDY 80

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYI---ASFSDNAKAIFEDFDF 120
                       FY   E   ST+       +    +++ +      +   +    D  F
Sbjct: 81  VDMVEFYTMKNVFYLPEEARWSTIRKAAKQDDIAVRIDTALHTVEKNNPALRGALPDNYF 140

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S     + K   L  +  + + I+   D     V+  +YE+ + +F +   +G  +F TP
Sbjct: 141 SRLGLDVSK---LAALIDSINNIDTVAD-HEQDVVGRVYEYFLGKFAATEGKGGGEFYTP 196

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + VV L   ++                 +YDP CG+GG    ++  V            +
Sbjct: 197 KCVVKLIAEMI-----------EPFRGKIYDPCCGSGGMFVQSVKFVESH---RGSKKDI 242

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE    T+ +    + IR + ++     +       T  KD     +  + ++NPP
Sbjct: 243 SIYGQEYTSTTYKLSKMNLAIRGIAANLGEAPA------DTFFKDQHPDLKADFIMANPP 296

Query: 301 FGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           F              ++  +  R+ G  +P   + +  +++H+ +KL    +  G A  V
Sbjct: 297 FNL------KEWRAANELTDDPRWAGYEVPPTGNANYAWILHMVSKL----SENGVAGFV 346

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--- 416
           L++  +      SGE  IRR L+ENDLI+ ++A+P  LF+ T I   LW ++  K     
Sbjct: 347 LANGSMSTN--TSGEGLIRRKLIENDLIDCMIAMPGQLFYTTQIPVCLWFITRNKKAQRI 404

Query: 417 ---------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
                    +RRG+   I+A ++ T I    K    +  D   +I   Y +     K   
Sbjct: 405 EGHSDSSHRDRRGETLFIDARNMGTMIDRTHK---ELTCDDIAEIARTYHAWRGEAKDGA 461

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADIT--WRKLSPLHQSFWLDILKP 521
             D   F  +   +       ++L        A +E D     +K++ L Q+ +  + + 
Sbjct: 462 YQDQPGFC-KAATLAEIKANDYVLTPGRYVGAAEIEDDGIPFEQKMTELSQTLYRQMAEA 520

Query: 522 MMQQIYPYGWAESF 535
                      E+ 
Sbjct: 521 EKLDAVIRRNLEAL 534


>gi|224437017|ref|ZP_03657998.1| type I restriction-modification system specificity subunit
           [Helicobacter cinaedi CCUG 18818]
 gi|313143489|ref|ZP_07805682.1| type I restriction-modification system [Helicobacter cinaedi CCUG
           18818]
 gi|313128520|gb|EFR46137.1| type I restriction-modification system [Helicobacter cinaedi CCUG
           18818]
          Length = 500

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 100/538 (18%), Positives = 190/538 (35%), Gaps = 68/538 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++  A+ L  +    ++  ++L    L+ +  + E     +  +  
Sbjct: 1   MAKVKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKA 113
                +        +A   F+   +   STL S         +L+     I   +   K 
Sbjct: 60  DAEDKD------EYIAKNIFFVPQDSRWSTLLSKAKSPQIGKDLDYALDLIEKDNPQLKG 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +         +     +  L  +      I L+ +   D  + +I+E+ +  F     + 
Sbjct: 114 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSDI-LGHIFEYFLGEFALSEGKK 168

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP+ VV L  A+L                 ++DP CG+GG    +   V +    
Sbjct: 169 GGQFYTPKSVVELLVAML-----------EPYNGRVFDPCCGSGGMFVQSERFVREHQGK 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R+++S   +  S+      +   D     +  
Sbjct: 218 I---SDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +             R+  G P  ++ +  ++ H  + L       
Sbjct: 270 FIIANPPFNATDWGSEA-------LENDVRWQYGTPPSTNANYAWISHFIHHLAPK---- 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  VL+   L +    S E +IR+ L+E++LIE IV LP  LF  T I   LW +   
Sbjct: 319 GRAGFVLAKGSLTSN--TSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 376

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----ENGKFSRML 468
           K          I+A  L   I     K RI+N D   +I + Y        +NG +S +L
Sbjct: 377 KPHNNT---LFIDARSLGELINR---KNRILNKDDIDKITETYHKWQKAQEQNGDYSDIL 430

Query: 469 DYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                G+ + +       + ++L       L  D               ++   + ++
Sbjct: 431 -----GFCKSVSKEEMANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEE 483


>gi|261339076|ref|ZP_05966934.1| hypothetical protein ENTCAN_05288 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318911|gb|EFC57849.1| ribosomal protein L11 [Enterobacter cancerogenus ATCC 35316]
          Length = 539

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 118/574 (20%), Positives = 211/574 (36%), Gaps = 84/574 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E F +
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEVFYQ 75

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY       S +     ++NL        S I   +   K    D  FS      
Sbjct: 76  Q-DNIFYLPEAARWSFIKQNAKQDNLAVLIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        + +  E  RF G   P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNDAELTEDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRARMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                +G+   I+A +L T +    K    +  D    I + Y +               
Sbjct: 400 GYRNRQGETLFIDARNLGTMMNRTTK---ELTADDIATIAETYHA--------------- 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD-ILKPMMQQIYPYGWA 532
              R      L        + LA+ E    + K++ + +    D +L P           
Sbjct: 442 --WRSTPEE-LAERVKRGDSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGAAEQED 498

Query: 533 ESFVKESIKSNEAKTL--KVKASKSFIVAFINAF 564
           +    E+     +KTL  ++K ++    A     
Sbjct: 499 DGVAFETKMRELSKTLFEQMKQAEELDNAIRQNL 532


>gi|168179782|ref|ZP_02614446.1| type I restriction-modification system, M subunit [Clostridium
           botulinum NCTC 2916]
 gi|182669249|gb|EDT81225.1| type I restriction-modification system, M subunit [Clostridium
           botulinum NCTC 2916]
          Length = 511

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 195/489 (39%), Gaps = 69/489 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+      A+L   +W  A DL G+ +  +F   IL     R L   +E     + ++  
Sbjct: 1   MSVSREQQANLHARLWDIANDLRGNMEANEFKNYILGLIFYRYLSEKVEGRAENLLKEDN 60

Query: 61  AFGGSNIDLESFVKV------AGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSD 109
                  + + + +       A   ++   +Y  S+L       N      +  I   ++
Sbjct: 61  ISYREAWEDDEYRQALQEELLAQIGYFIEPKYLFSSLMKEIETGNFDVEMLQGSINDITE 120

Query: 110 NAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +        DF      ++            ++ L+ K+  N S I+   D     V+ +
Sbjct: 121 STLGHKSQDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDVLGD 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ V  +   L+      L        +++YDP CG+G
Sbjct: 181 AYEYLISQFAATAGKKAGEFYTPQQVSKILAKLVTVGKKDL--------KSVYDPACGSG 232

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L              K   +   +GQEL   T+ +    ML+  +  +       +I+
Sbjct: 233 SLLLRVS----------KEANVRKFYGQELTSTTYNLARMNMLLHDVSYER-----FDIR 277

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGS 335
              TL        +F   ++NPP+  KW  DK  ++ E       RF     L   S   
Sbjct: 278 NDDTLENPQHIDMKFDAVVANPPYSAKWSADKKFLDDE-------RFSAYGKLAPKSKAD 330

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+  +L    N GG  A+VL    LF G A   E  IR++L+E  + ++ ++ LP
Sbjct: 331 YAFVQHMIYQL----NEGGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDGVIGLP 383

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + +   +K+ E    V  I+A+  +      GK + ++ D    +I+ 
Sbjct: 384 ANIFFGTSIPTVILVF--KKSRENSDNVMFIDASREFEK----GKNQNVLKDKDVEKIIS 437

Query: 455 IYVSRENGK 463
            Y+ RE   
Sbjct: 438 TYIKRETVD 446


>gi|312886110|ref|ZP_07745731.1| type I restriction-modification system, M subunit [Mucilaginibacter
           paludis DSM 18603]
 gi|311301409|gb|EFQ78457.1| type I restriction-modification system, M subunit [Mucilaginibacter
           paludis DSM 18603]
          Length = 519

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 108/567 (19%), Positives = 197/567 (34%), Gaps = 78/567 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+   +   + + +WK  +   G    + +   +L    ++ L    +    A  +KY 
Sbjct: 1   MTKI--TQKDINDAVWKACDTFRGSIDPSVYKDYVLTMLFIKYLSDVHDDKMDAYLKKYN 58

Query: 61  AFGGSNIDLESFVKVAGY-SFYNTSEYSLSTLGSTNTRNNLESYIA-------------S 106
                  D+E   +   +  F        + L ++    N+   I               
Sbjct: 59  G------DMERAKRAMQHERFIVPEHSHFNFLYNSRNEANIGELINIALADLEEANREKL 112

Query: 107 FSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSG--IELHPDTVPD-RVMSNIYEH 161
           +S++   IF++ DF+        +K   L  +  +F+   + L P  +    ++   Y  
Sbjct: 113 YSEDGAGIFQNIDFNSSKLGEPKDKNTRLKHLLLDFNKDALNLRPSHLDGVDIIGGAYMF 172

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  F S+  + A +F TP++V  L   L                  + DPTCG+   L 
Sbjct: 173 LIENFASDAGKKAGEFFTPKEVSTLIAKL----------TKSKPGSRICDPTCGSASLLI 222

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A   V               +GQE    T A+ V  M +   +       +  I+ G T
Sbjct: 223 KAGEEVGSDN--------FSLYGQEANGSTWALAVMNMFLHGFD-------NATIRWGDT 267

Query: 282 LSKDLFTG----KRFHYCLSNPPFGKKWE-------KDKDAVEKEHKNGELGRFGPGLPK 330
           +            +F   ++NPPF             DK  V  + +  +  RF  G+P 
Sbjct: 268 IRNPKLKEGDMLMKFDTVVANPPFSLDKWGKVEDKEGDKTTVSYDPETDKYNRFWRGVPP 327

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S G   F+ H+   L       GRA +V+    LF     S E  IR+  +E +L+EA+
Sbjct: 328 KSKGDWAFISHMIETLNEH----GRAGVVVPHGVLFRS---SSEGRIRQRTIEENLLEAV 380

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T I   + I + +K+         I+A+  + + +N    +  +      
Sbjct: 381 IGLPANLFFGTGIPAAILIFNKQKSS---NNFLFIDASKQYKNAKN----QNRLRARDIE 433

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            I+  Y     GK    +    F Y            + L+         +     ++ +
Sbjct: 434 LIVKTYRDFAEGKLKPGIVEEKFSYVA-TPEEVQENDYNLNLPRYVDTFEEEPEVDIAKV 492

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVK 537
            +       +    Q     +    +K
Sbjct: 493 QEEIIGLEEELSKVQHEINQYLNQLIK 519


>gi|121609950|ref|YP_997757.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121554590|gb|ABM58739.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 520

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 97/479 (20%), Positives = 187/479 (39%), Gaps = 68/479 (14%)

Query: 2   TEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
            +     ++L     ++K A+ L G+ + +D+  V L    L+ +    E    ++    
Sbjct: 4   NDTNKKGSNLGFEAEMFKAADKLRGNMEPSDYKHVALGLIFLKYISDTFEARHKSLLA-- 61

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAK 112
                     +    +A   F+   +   S L +   +  + + I          +   +
Sbjct: 62  ---DNPQDVEDRDAYLADNVFWVPKDARWSHLQAHAKQPTIGTLIDDAMRAIEKDNATLQ 118

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVS 171
           ++         + ++    +L ++    SGI L+ +      ++  +YE+ + +F     
Sbjct: 119 SVLPKDYARPALNKV----MLGELIDLISGITLNQEGHASRDILGRVYEYFLGQFAGAEG 174

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  VV     +L                 +YDP CG+GG    +   V + G
Sbjct: 175 KRGGEFYTPGSVVRTLVEML-----------EPYQGRIYDPCCGSGGMFVQSEKFVQEHG 223

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTG 289
                   +  +GQE    T  +    + +R ++SD        I+  +  +  KD    
Sbjct: 224 GRIG---DIAIYGQESNHVTWRLAKMNLAVRGIDSD--------IRWNNEGSFHKDELRD 272

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  Y L+NPPF               +  E  R+  G+P + + +  +L H+ + L   
Sbjct: 273 LKADYILANPPFNISDWGGD-------RLREDVRWKFGVPPVGNANYAWLQHIVHHLAP- 324

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A +VL++  + +    SGE +IRR ++E D+++ +VALP  LF+ T I   LW 
Sbjct: 325 ---NGTAGVVLANGSMSSS--QSGEGDIRREMVEQDIVDCMVALPGQLFYSTQIPACLWF 379

Query: 410 LSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           L+  K+          +RR +V  I+A  L   +      RR + D   R+I   Y + 
Sbjct: 380 LARDKSNGRAGKAYLRDRRKEVLFIDARKLGVLVDRT---RRELTDADVRRIAGTYHAW 435


>gi|257093459|ref|YP_003167100.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045983|gb|ACV35171.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 515

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 105/558 (18%), Positives = 195/558 (34%), Gaps = 80/558 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------------ALEPTRSAV 55
              +   +W  A+ L  +    ++  ++L    ++ +                +P     
Sbjct: 2   LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELARRFADPADDYY 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108
            +          D + + +V    F+         L +   + ++   I          +
Sbjct: 62  LDAADLIAEELEDRDYYREV--NVFWVPESARWEALRTAAKQPDIGKRIDDALTLIEVEN 119

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167
              K I +     + +      G L ++    S I    D      V+  +YE+ + +F 
Sbjct: 120 PKLKGILDKRYARAQLPD----GKLGELVDLVSTIGFGADPGKARDVLGQVYEYFLGQFA 175

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP  +V    A+L                 +YDP CG+GG    +   V
Sbjct: 176 SAEGKKGGQFYTPASIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEKFV 224

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +  +GQE  P T  +    + IR ++ +  R+ +       T +++  
Sbjct: 225 EAHG---GKLGNVSIYGQESNPTTWRLAAMNLAIRGIDFNLGREPA------DTFTRNQH 275

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R  + L+NPPF                     R+  G P   + +  +L H+   L+
Sbjct: 276 PDLRADFILANPPFNVS-------DWWHGSLEGDPRWEFGTPPQGNANYAWLQHMLYHLK 328

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + +    + E +IRR +++ D++E ++ALP  LFF T I   L
Sbjct: 329 PS----GRAGIVLANGSMSSS--QNSEGDIRRAMVDADVVEVMIALPGQLFFNTQIPACL 382

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W L+  K     G+V  I+A  L   I      +  ++D+   +I     +  +   +  
Sbjct: 383 WFLTKHKAARP-GEVLFIDARKLARMISRV---QTELSDEVIDRIAGTVAAWRDEADAEE 438

Query: 468 LDYRTFGYRRIK----------VLRPLRM----SFILDKTGLARLEADITWRKLSPLHQS 513
                 GY R            VL P R         D    A     +T +    + + 
Sbjct: 439 YQDIP-GYCRSVNLAEIADHGHVLTPGRYVGAEEVEDDDEAFADKMQKLTEKLGEQMAKG 497

Query: 514 FWLDILKPMMQQIYPYGW 531
             LD L  + Q++   G+
Sbjct: 498 AELDAL--IRQKLGGLGY 513


>gi|227505724|ref|ZP_03935773.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum
           ATCC 6940]
 gi|227197692|gb|EEI77740.1| adenine-specific DNA-methyltransferase [Corynebacterium striatum
           ATCC 6940]
          Length = 543

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 172/478 (35%), Gaps = 62/478 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +   L + +WK A+ L G    + +  ++L    L+ +  A +  R+ +R +    G 
Sbjct: 16  ATTLKELKDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRAELRAEGEERGD 75

Query: 65  -----SNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                     +         F+    + ++     S     +      S         + 
Sbjct: 76  SEEYIQEDLEDIDAYREKNVFWVDPIARWTFLRDNSKGKSADAGQEYQSIGKLIDNAMKQ 135

Query: 118 FDFSST--IARLEKA--------GLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRR 165
               +   +  L             L ++   FS      +       ++  +YE+ + +
Sbjct: 136 LMLDNESLLGTLPTNFASESVDQRRLGELIDLFSTTRFTAEGPERARDLLGEVYEYFLEK 195

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     +   +F TPR VV     +L                 +YDP CG+GG    A  
Sbjct: 196 FARAEGKRGGEFYTPRPVVRTLVEIL-----------EPTQGRVYDPCCGSGGMFVQAEK 244

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +               +GQEL   T  +    + I  + S    +     +   T ++D
Sbjct: 245 FLETTEKDRTALA---IYGQELNERTWRMAKMNLAIHAISSAGLGE-----RWADTFARD 296

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +   K+  Y ++NPPF          ++   +N E  R+  G+P   + +  ++ H+ +K
Sbjct: 297 IHPDKQMDYVMANPPFN---------IKDWSRNEEDTRWKYGVPPKRNANFAWMQHIISK 347

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L      G   A   + +   N    SGE +IR+ ++E+D++  ++ALP  LF  T I  
Sbjct: 348 LTPQGEAGVVMA---NGTMTSNS---SGEGDIRKAMVEDDIVSCVIALPAQLFRGTQIPV 401

Query: 406 YLWILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            +W  +  K        +R  +V  I+A +L   I       R  +D+  ++I D Y 
Sbjct: 402 CVWFFAKDKKAGSKGTIDRTNQVLFIDARELGHMIDRTE---RTFSDEDIQKIADTYR 456


>gi|167620605|ref|ZP_02389236.1| type I restriction-modification system, M subunit [Burkholderia
           thailandensis Bt4]
          Length = 542

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 187/505 (37%), Gaps = 71/505 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S   +    W   +   G      +   IL    L+ +        +  + +Y 
Sbjct: 1   MTEK-LSQQEVNATAWAACDTFRGVVDPAQYKDYILVMLFLKYVSDLWNDHYAEYKTQYG 59

Query: 61  AFGG---SNIDLESFV---------KVAGYSFYNTSEY--SLSTLGSTNTRNNLESYIAS 106
                    ++ E F+           A      T  +    + L       N+   I  
Sbjct: 60  DDDERIRRKLERERFILPYVELKEDDPATGKSRVTDRFLGDFNALYERRNEPNIGELINI 119

Query: 107 FSDNAKA--------IFEDFDFS---STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             D+ +         +F + DF+   +     ++   L  + ++F+ ++L P  V + V+
Sbjct: 120 VLDHIEDVNKAKLEGVFRNIDFNSEANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSEDVI 179

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            N Y +LI RFGS+  + A +F TP+ V  L +AL            P     + DP+CG
Sbjct: 180 GNTYIYLIERFGSDAGKKAGEFYTPKMVSRLLSAL----------ARPKPGDRICDPSCG 229

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +A   V    SH          G+E+   T A+    M I   +       +  
Sbjct: 230 SGSLLIEAAQMVEAQDSH-----NYALFGEEVNGATWALARMNMFIHSKD-------AAR 277

Query: 276 IQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           I+   TL+           +F+  ++NPPF                N    RF  G+P  
Sbjct: 278 IEWCDTLNSPALIEGDRLMKFNVVVANPPFSLD-----KWGADHADNDRFNRFWRGVPPK 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S G   F++++  +        GR A+V+    LF G A   E  IR+ L+E +L++A+V
Sbjct: 333 SKGDWAFIVNMIERALPQE---GRVAVVVPHGVLFRGGA---EGRIRQKLIEENLLDAVV 386

Query: 392 ALPTDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
            LP +LF  T+I   + +    +      E    V  ++A+  +      GK +  ++D+
Sbjct: 387 GLPGNLFPTTSIPVAILLFDRSREKGGPSEHVRDVLFVDASREFIP----GKNQNQLSDE 442

Query: 448 QRRQILDIYVSRENGKFSRMLDYRT 472
              +I+     R        +    
Sbjct: 443 HFEKIVTTVAERRIVDKYAYVASLD 467


>gi|304437971|ref|ZP_07397916.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
 gi|304369055|gb|EFM22735.1| site-specific DNA-methyltransferase (adenine-specific) [Selenomonas
           sp. oral taxon 149 str. 67H29BP]
          Length = 538

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 104/537 (19%), Positives = 202/537 (37%), Gaps = 59/537 (10%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +   S+A +     IW  A  LWG     ++ KVI+    LR +    E   + +  +
Sbjct: 36  MAKSKTSSAKIGFEKQIWDAAVKLWGHISAAEYRKVIVGLIFLRYISSVFEKRYAELVAE 95

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNA 111
                G   + +     A   F+         + S      + +        I + +   
Sbjct: 96  -----GDGFEDDPDAYEAENIFFVPENARWKLIASKAHTPEIGTVIDEAMRAIEADNKTL 150

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K +      S  + +     +L ++   F+ +++        ++   YE+ I +F +   
Sbjct: 151 KNVLPKNYASPDLDK----RVLGEVVDLFTNMDMESAENTKDLLGRTYEYCIAQFAAYEG 206

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  +V    A+L           P     +YDP CG+GG    +   +   G
Sbjct: 207 KKGGEFYTPASIVKTIVAVL----------RPFSNCRVYDPCCGSGGMFVQSAKFIEVHG 256

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +   GQE  P+T  +    + IR ++++     +       T   DL+   +
Sbjct: 257 GRRGA---VTVFGQESNPDTWKMAKMNLAIRGIDANLGEYQA------DTFFNDLYANLK 307

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF K             +  E  R+  G+P   + +  ++ H+ + L+    
Sbjct: 308 ADFIMANPPFNKDDWGQP-------QLKEDARWKYGVPPAGNANYAWIQHMISHLKP--- 357

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+  +VL++  L       GE EIRR ++E DL+E I+ALP  LF+   I   LW ++
Sbjct: 358 -NGKIGLVLANGALST--QTGGEGEIRRKIIEADLVEGIIALPDKLFYSVTIPVTLWFIT 414

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K +  +GK   I+A  +   +     K R  +D+   +I D +V+ +NG+   +  + 
Sbjct: 415 RNKQQ--KGKTLFIDARKMGAMVDR---KHRDFSDEDIDKIADTFVAFQNGRLDDVKGFC 469

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            F      +       ++L       +E      +            L  +  + + 
Sbjct: 470 AFA----SLDDIAAQDYVLTPGRYVGIEEQEDDDEPFEDKMKRLTGELSELFAKSHE 522


>gi|257060099|ref|YP_003137987.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
 gi|256590265|gb|ACV01152.1| N-6 DNA methylase [Cyanothece sp. PCC 8802]
          Length = 522

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/544 (22%), Positives = 213/544 (39%), Gaps = 53/544 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVR 56
             + S  SL ++IW  A  + G  +   +   ILP    +RL    +        +   R
Sbjct: 11  NNSNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAVKVKTR 70

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKA 113
           EK       + +L  F         + + +S+    S      L  Y   IA  +   K 
Sbjct: 71  EKAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKG 130

Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I +  DF++TI   R      L  + +  S   L    V   ++   YE+LIR+F     
Sbjct: 131 IIDRVDFNATIHGERELDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE-SG 189

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP++V  +   ++           P     +YDP CG+ G L      +A+  
Sbjct: 190 KSAGEFYTPKEVGIIMAKIM----------QPQPGMAIYDPCCGSAGLLIKCQLVLAESQ 239

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--- 288
                   L  +GQE   +T A+    M+I  +E          I+ G +     F    
Sbjct: 240 EKGGKYAPLQLYGQEYTGDTWAMANMNMIIHDMEG--------KIEIGDSFRFPKFKQGG 291

Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKL 346
              +F   ++NP + + W  ++D    E      GRF  G     S     ++ H+   L
Sbjct: 292 NLAQFDRVVANPMWNQNWFTEQDYDGDEW-----GRFPQGAGFPGSKADWGWVQHIWASL 346

Query: 347 ELPPNGGGRAAIVLSSSPLFNG---RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +      G++AIVL +     G        E E+R+W +E D+IE ++ LP +LF+ T+ 
Sbjct: 347 QPH----GQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLFYNTSA 402

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + IL+  K+E R+ ++ LINA+  +      G  +  I+D+   +I+  +++ E   
Sbjct: 403 PGIILILNKAKSEARKHQLLLINASLEFAK----GDPKNYISDEGINRIVTAFLNWEEQD 458

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           KFSR++           +  P R   + +      +   +   +           IL  +
Sbjct: 459 KFSRIVSKEEIAKNDYNI-SPSRYIHVAEAEEFRPISEILQELEELESQAEETNRILMQV 517

Query: 523 MQQI 526
           + + 
Sbjct: 518 LSKF 521


>gi|53803793|ref|YP_114323.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
 gi|53757554|gb|AAU91845.1| type I restriction-modification system, M subunit [Methylococcus
           capsulatus str. Bath]
          Length = 526

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/508 (20%), Positives = 185/508 (36%), Gaps = 77/508 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE   S   +    W   +   G      +   IL    L+ +        +  + +Y 
Sbjct: 1   MTEK-LSQQEVNATAWAACDTFRGVVDPAQYKDYILVMLFLKYISDLWNDHYAEYKAQYG 59

Query: 61  AFGGS---------------NIDLESFVKVAGYSFYNTSEY--SLSTLGSTNTRNNLESY 103
                                +  +               +    + L       N+   
Sbjct: 60  DDDERIRRKLERERFILPYVELKEDDQETGKSQV---IDRFLGDFNALYERRNEPNIGEL 116

Query: 104 IASFSDNAKA--------IFEDFDFS---STIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           +    D+ +         +F + DF+   +     ++   L  + ++F+ ++L P  V +
Sbjct: 117 VNIVLDHIEDANKAKLEGVFRNIDFNSEANLGKAKDRNRRLKTLLEDFAKLDLRPSRVSE 176

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ N Y +LI RFGS+  + A +F TP+ V  L  AL           +P     + DP
Sbjct: 177 DVIGNTYIYLIERFGSDAGKKAGEFYTPKMVSRLLAAL----------ANPRPGDRICDP 226

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           +CG+G  L +A   V   GSH          G+E+   T A+    M I   +       
Sbjct: 227 SCGSGSLLIEAAQWVEAQGSH-----NYALFGEEVNGATWALARMNMFIHSKD------- 274

Query: 273 SKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +  I+   TL+           +F+  ++NPPF       + A           RF  G+
Sbjct: 275 AARIEWCDTLNSPALIEGDRLMKFNVVVANPPFSLDKWGAEHADHDRF-----NRFWRGV 329

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P  S G   F+ ++  +        GR A+V+    LF G A   E  IRR ++E +L++
Sbjct: 330 PPKSKGDWAFITNMIERALPRE---GRVAVVVPHGVLFRGGA---EGRIRRAMIEENLLD 383

Query: 389 AIVALPTDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRII 444
           A+V LP +LF  T+I   + +    +      E    V  ++A+  +      GK +  +
Sbjct: 384 AVVGLPGNLFPTTSIPVAILLFDRAREKGGPREDVRDVLFVDASREFIP----GKNQNQL 439

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472
           ++   ++I+    +R N      +    
Sbjct: 440 SEAHFQKIVSTVAARRNVDKYAYVASLD 467


>gi|319744117|gb|EFV96490.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus agalactiae ATCC 13813]
          Length = 501

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/534 (18%), Positives = 200/534 (37%), Gaps = 62/534 (11%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T ++A++     +W  A+ L G     D+ KVI+    L+ +  +     + + ++   
Sbjct: 3   KTNTSANIGFEKELWDAADSLRGHISAADYRKVIIGLIFLKYVSDSFTIKYNYLLKE--- 59

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAI 114
                 + +    V+   F+   +     +             ++    I S + +   +
Sbjct: 60  --DEGFEEDRDEYVSENIFFVPQKSRWDYIAENAHSPEIGIILDDAMREIESENKSLVGV 117

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                 +  + +     +L ++   F+ I +        ++   YE+ + +F +   +  
Sbjct: 118 LPKVYATPDLDK----RVLGEVVDIFTNINMFAHGNEKDLLGRTYEYCLEQFAAYEGKNG 173

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V     +L                 +YDP CG+GG    +   V +   + 
Sbjct: 174 GEFYTPTSIVKTIVEIL-----------KPFNGRVYDPACGSGGMFVQSETFVENHSGNI 222

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                L  +GQE   +T  +    M IR +E +     +       T   DL    +  Y
Sbjct: 223 N---NLSIYGQEANADTWKMAKINMAIRGIEPNFGPHQA------DTFIDDLHPTLKADY 273

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K            K  +  R+  G P  S+ +  ++ H+ + L       G
Sbjct: 274 IMANPPFNLKKWGAD-------KLVDDVRWKYGTPPDSNANYAWIQHMIHHLAP----NG 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +  +VL++  L      SGE +IR+ ++E+DL+E IVALP  LF+   I   LW +S  K
Sbjct: 323 KIGLVLANGSL--SSTQSGEGDIRKAIIEDDLVEGIVALPAQLFYSVTIPACLWFISKNK 380

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             +++GK   I+A +L   +     K R   DD  ++I   + + + G           G
Sbjct: 381 --KQKGKTVFIDARNLGHMVDR---KHRDFTDDDIQKIAKTFEAFQEG-----TLENEKG 430

Query: 475 YRRIKVLRPL-RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +  +   + +    +IL       +E      +            L  + +Q +
Sbjct: 431 FCAVVETKAIAEQDYILTPGRYIGIEDKEEDSEPFEEKMERLTTELSELFKQSH 484


>gi|227892231|ref|ZP_04010036.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
 gi|227865953|gb|EEJ73374.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
          Length = 506

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 113/555 (20%), Positives = 215/555 (38%), Gaps = 65/555 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T    ++   +W+ A+ L G    +++  V+L    L+ +  + E  R  +     
Sbjct: 1   MVEKTKEL-NIERDLWQAADKLRGSMDESEYRNVVLGLIFLKYVSDSFEEKRDEIL---- 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
                    E    +A   F+   E   S +             +N    I   +++ + 
Sbjct: 56  NSDYPEEVEEPDAYLAENIFWVPKEARWSVIQKAAKTPQVGEIIDNAMDAIEKNNNSLRG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  I +      L  +    S I L  D     ++  +YE+ + +FG    + 
Sbjct: 116 VLNKNYASPDIDK----TRLGGVVDLVSNISLKGDG-KLDLLGRVYEYFLNKFG--SGKT 168

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP+ +V     ++                 +YDP CG+GG    +   V +    
Sbjct: 169 GGEFYTPQSIVKTLVEMI-----------EPYRGRIYDPCCGSGGMFVQSGKFVQEHQGR 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +G+E  P T  +    + IRR++++  +       QG T + DL  G+RF 
Sbjct: 218 IG---DLSIYGEESNPTTWKLAKMNLAIRRIDNNLGQ------YQGDTFTNDLHKGERFD 268

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF  K    +       K  E  R+  G+P + + +  ++ H+ +KL       
Sbjct: 269 FILANPPFNIKDWSGE-------KLREDARWKYGVPPVGNANYAWIQHIISKLTPD---- 317

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+A  VL++  L        E  IR+ ++E+D I+AIVA+P  +F+ T I   LW +   
Sbjct: 318 GKAGFVLANGALSTSTKE--EYAIRKAIIEDDKIDAIVAIPDKMFYTTGIPASLWFIDMD 375

Query: 414 KT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           K+     +R G+   I+A +L   +       R  +D+  ++I D Y +          D
Sbjct: 376 KSSDDERKRNGETLFIDARELGEMLDRT---HRGFSDEDIKKIADTYHAYRGTNDKEYKD 432

Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               G+ ++ K+    +  ++L       L            ++     +   + +Q   
Sbjct: 433 IA--GFCKVAKIEDIAKNDYVLTPGRYVGLAEK---EDDGEPYEVKMERLTNELKEQFEE 487

Query: 529 YGWAESFVKESIKSN 543
               ++ +KE +K  
Sbjct: 488 SNKLQAEIKEVLKEL 502


>gi|237752774|ref|ZP_04583254.1| type I restriction-modification system [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376263|gb|EEO26354.1| type I restriction-modification system [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 507

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/539 (17%), Positives = 190/539 (35%), Gaps = 69/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++  A+ L  +    ++  ++L    L+ +  + E     +  +  
Sbjct: 7   MAKVKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 65

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKA 113
                +        +A   F+   +   S+L S         +L+     I   +   K 
Sbjct: 66  DAEDKD------EYIAKNIFFVPQDSRWSSLLSKAKSPQIGKDLDYALDLIEKDNPQLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +         +     +  L  +      I L+ +   D  + +I+E+ +  F     + 
Sbjct: 120 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSDI-LGHIFEYFLGEFALSEGKK 174

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP+ VV L  A+L                 ++DP CG+GG    +   V +    
Sbjct: 175 GGQFYTPKSVVELLVAML-----------EPYNGRVFDPCCGSGGMFVQSERFVREHQGK 223

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R+++S   +  S+      +   D     +  
Sbjct: 224 I---SDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 275

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +             R+  G P  ++ +  ++ H  + L       
Sbjct: 276 FIIANPPFNATDWGSEA-------LENDVRWQYGTPPSTNANYAWISHFIHHLAPK---- 324

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  VL+   L +    S E +IR+ L+E++LIE IV LP  LF  T I   LW +   
Sbjct: 325 GRAGFVLAKGSLTSN--TSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 382

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------NGKFSRM 467
           K+         I+A  L   I     K RI+      +I + Y   +      +G++S +
Sbjct: 383 KSHNNT---LFIDARSLGELINR---KNRILTQSDIAKITETYHKWQKAQEQKDGEYSDI 436

Query: 468 LDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           L     G+ + +       + ++L       L  D               ++   + ++
Sbjct: 437 L-----GFCKSVSKEEIANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEE 490


>gi|242372574|ref|ZP_04818148.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
 gi|242349791|gb|EES41392.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
          Length = 518

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 108/495 (21%), Positives = 192/495 (38%), Gaps = 73/495 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+    +F   IL     R L   +E + + +  +       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEESSAKLLSEDNISYQE 68

Query: 66  NIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114
            ++ + +        +    F    E   S L +       E  I   S+  K +     
Sbjct: 69  AMNNDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFE--IEDLSNAIKNVENSTR 126

Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158
                      F+D D +S  +RL         L+ K+  N S +      +   ++ + 
Sbjct: 127 GHESEDDFIHLFDDMDLNS--SRLGNTNAARTKLIAKVMMNISTLPFVHSDLEIDMLGDA 184

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G 
Sbjct: 185 YEYLIGQFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L              +   +   +GQE    T+ +    ML+  +        +  I+ 
Sbjct: 237 LLLRVG----------RESKVRNYYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIEN 281

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL      G++F   ++NPP+   W  +   ++ E  +         L   S     F
Sbjct: 282 GDTLEDPAHKGEQFDAVVANPPYSANWSAESSFLDDERFSDY-----GKLAPKSKADFAF 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           + H+   L+      G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +L
Sbjct: 337 IQHMIYHLDDE----GTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + +   +K  +    V  I+A+  +      GK +  + D+   +I+D Y 
Sbjct: 390 FFGTSIPTCVLVF--KKCRQADDDVVFIDASQSFEK----GKNQNHLTDEDVDKIVDTYS 443

Query: 458 SRENGKFSRMLDYRT 472
            RE       +    
Sbjct: 444 QRETIDKYSYVATLD 458


>gi|254372254|ref|ZP_04987745.1| hypothetical protein FTCG_01320 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569983|gb|EDN35637.1| hypothetical protein FTCG_01320 [Francisella novicida GA99-3549]
          Length = 503

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 189/554 (34%), Gaps = 61/554 (11%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + +  + 
Sbjct: 1   MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAEL--QS 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112
             +       E         F+  ++   S L +      +          I   +++ K
Sbjct: 59  EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L                 ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P   + +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPAGNANYAWIQHFLYHLAPT-- 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL+   L +    SGE +IR+ L+E +L++ IV LP  LF  T I   LW + 
Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI- 378

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K   +   +  I+A +    I    K     +DD   +I   Y + +  K    +   
Sbjct: 379 --KRGRKTKDILFIDARNKGHLINRRTK---EFSDDDITEIAQTYHNWKVDKDYEDI--- 430

Query: 472 TFGYRRIKV-LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             G+ +         ++++L       LE        +    S    + + M Q+     
Sbjct: 431 -KGFCKSASYEEVAELNYVLTPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQEEALNQ 489

Query: 531 WAESFVKESIKSNE 544
                + +   + E
Sbjct: 490 RIMDNLAKIKIAEE 503


>gi|168464569|ref|ZP_02698472.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195632696|gb|EDX51150.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 539

 Score =  311 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/577 (19%), Positives = 210/577 (36%), Gaps = 84/577 (14%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E 
Sbjct: 16  EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEV 72

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124
           F +     FY   E   S +     ++++        S I   +   K    D  FS   
Sbjct: 73  FYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               +   L  +      IE             + ++  +YE+ + +F +   +G  +F 
Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ VV L T +L                 +YDP CG+ G    ++  V           
Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+N
Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF             + +  +  RF G   P   + +  +++H+ +KL    +  G A 
Sbjct: 289 PPFNL------KDWRNDAELTKDLRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            VL++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +
Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396

Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                   +G+   I+A +L T +    K    +  D    I D Y +            
Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMMNRTTK---ELTADDIATIADTYHA------------ 441

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                 R      L        + LA+ E    + K++ + +    D +    + +    
Sbjct: 442 -----WRSTPEE-LAARVKRGDSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGAAE 495

Query: 531 WAESFVKESIKSNEAKT---LKVKASKSFIVAFINAF 564
             +  V    K  E       ++K ++    A     
Sbjct: 496 QEDDGVAFETKMRELSQTLFAQMKQAEELNKAIRQNL 532


>gi|19881211|gb|AAM00826.1|AF486545_4 HsdM [Campylobacter jejuni]
          Length = 500

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 103/546 (18%), Positives = 195/546 (35%), Gaps = 64/546 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L + +WK+A+ L  +    ++  ++L    LR +  +       + ++           
Sbjct: 8   KLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDAD 67

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSS 122
           E     A   F+   +   + +        +          I   +D  K +        
Sbjct: 68  EYL---ADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKD 124

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            +     +  L ++      I          V+ +++E+ +  F     +    F TP+ 
Sbjct: 125 NL----DSKCLGELIDLIGNIAF-DTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKC 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   +L                 ++DP CG+GG    +   V            +  
Sbjct: 180 VVELLVTML-----------EPYKGRVFDPCCGSGGMFVQSEEFVKSH---QGRLDDISI 225

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T+ +    + IR++ES      ++      +   D     +  + ++NPPF 
Sbjct: 226 YGQESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFN 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +            GR+  G+P  S+ +  ++ H    L      GG A  VL+ 
Sbjct: 281 DSDWSGE-------LLENDGRWKYGVPPASNANYAWIQHFLYHLSPN---GGVAGFVLAK 330

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L +      E+ IR+ L+E+DLI+ IV LP  LF  T I   LW +  +K  +   K 
Sbjct: 331 GALTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKT 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKV 480
             I+A DL T      ++ + +N D   QI +IY + +NG      DY    G+ + + +
Sbjct: 389 LFIDARDLGT---RINRRNKTLNKDDINQIANIYKAWKNG-----TDYEDIKGFCKSVSI 440

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                +S++L       L             +  +      ++ ++      E  + E+I
Sbjct: 441 DEIRELSYVLTPGRYVGLADS--------DDEFDFDTRFNELLAKLKSQIKTEQELSETI 492

Query: 541 KSNEAK 546
             N  K
Sbjct: 493 LKNLEK 498


>gi|241895464|ref|ZP_04782760.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Weissella paramesenteroides ATCC 33313]
 gi|241871438|gb|EER75189.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Weissella paramesenteroides ATCC 33313]
          Length = 517

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 119/550 (21%), Positives = 220/550 (40%), Gaps = 80/550 (14%)

Query: 1   MTEF----TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M+E         A L   +W  A DL G+   ++F   IL     R L   +      + 
Sbjct: 1   MSETHTVQATQQAELQRKLWAIANDLRGNMDASEFRNYILGLIFYRFLSDGVSAYVKELL 60

Query: 57  --------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESY 103
                   E Y      +  ++   +  G  F+   E+   TL +           L++ 
Sbjct: 61  VNDDITFAEAYADDEMRDDLVDDITEAMG--FFVAPEFLFETLVADAQAGRFDVEKLQTA 118

Query: 104 IAS---------FSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDT 149
           + +           ++ + +F+D D +ST  RL     E++ L+ K+  N + +++  D 
Sbjct: 119 VNAVQSSTIGEESEEDFRGLFDDLDLNST--RLGNTVAERSALMQKVLLNLADLDMGHDE 176

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           V   V+ + YE+LI +F +   + A +F TP+ V  L   ++    D L        + +
Sbjct: 177 VQIDVLGDAYEYLIGQFAANAGKKAGEFYTPQQVSKLLAQIVTKGHDTL--------QNV 228

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPT G+G  L    ++            +   +GQEL   T+ +    +L+  +  +  
Sbjct: 229 YDPTMGSGSLLLRIGDYA----------TVGNYYGQELNRTTYNLGRMNLLMHGVSYN-- 276

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                ++QQG TL  D F G++F   ++NPP+  KW  D    ++        R      
Sbjct: 277 ---QFSVQQGDTLENDYFEGQQFDAVVANPPYSAKWNTDGKLDDERF------RKYGKTA 327

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIE 388
             S     F+ H+   L    N  G  A+VL    LF G A   E  IRR+++E D +++
Sbjct: 328 PKSKADFAFVEHMLAHL----NVTGTMAVVLPHGVLFRGAA---EGTIRRYMIEQDNVLD 380

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP +LFF T+I T + +    ++ +    V  I+A+  +      GK +  + D Q
Sbjct: 381 AVIGLPANLFFGTSIPTTVLVFKKNRSNQ---DVFFIDASADFEK----GKNQNNLTDTQ 433

Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I+D Y  RE+ + ++ +            +  P  +    ++  +          + 
Sbjct: 434 LARIVDTYDKREDVEKYAHLASRDEIIENDFNLNIPRYVDTFEEEEPIDLAATQKEIEET 493

Query: 508 SPLHQSFWLD 517
                    +
Sbjct: 494 DAEIAKLTAE 503


>gi|237751050|ref|ZP_04581530.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
 gi|229373495|gb|EEO23886.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
          Length = 501

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 96/539 (17%), Positives = 188/539 (34%), Gaps = 69/539 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +   L   ++  A+ L  +    ++  ++L    L+ +  + E     +  +  
Sbjct: 1   MAKIKQT-QKLEAALFSAADKLRKNIDAAEYKHIVLGLVFLKYISDSFESLHKELLSQNE 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSDNAKA 113
                +        +A   F+   +   S L S         +L+     I   +   K 
Sbjct: 60  DAEDKD------EYIAKNIFFVPQDSRWSALLSKAKSPQIGKDLDYALDLIEKDNPQLKG 113

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +         +     +  L  +      I L+ +   D  + +I+E+ +  F     + 
Sbjct: 114 VLPKVYAKDNL----DSATLGDLINLIDSISLNQENTSDI-LGHIFEYFLGEFALSEGKK 168

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP+ VV L  A+L                 ++DP CG+GG    +   V +    
Sbjct: 169 GGQFYTPKSVVELLVAML-----------EPYNGRVFDPCCGSGGMFVQSERFVREHQGK 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + +R+++S   +  S+      +   D     +  
Sbjct: 218 I---SDISIYGQESNQTTWRLAKMNLALRKIDSSSLKWNSEG-----SFLNDAHKDLKAD 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF       +             R+  G P  ++ +  ++ H  + L       
Sbjct: 270 FIIANPPFNATDWGSEA-------LENDVRWQYGTPPSTNANYAWISHFIHHLAPK---- 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  VL+   L +    S E +IR+ L+E++LIE IV LP  LF  T I   LW +   
Sbjct: 319 GRAGFVLAKGSLTSN--TSTEGQIRKNLIESNLIECIVNLPAKLFLNTQIPACLWFIKRN 376

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN------GKFSRM 467
           K+         I+A  L   I     K RI+      +I + Y   +       G++S +
Sbjct: 377 KSHNNT---LFIDARSLGELINR---KNRILTQSDIAKITETYHKWQKAQEQQSGEYSDI 430

Query: 468 LDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           L     G+ + +       + ++L       L  D               ++   + ++
Sbjct: 431 L-----GFCKSVSKEEIANLGYVLTPGRYVGLAEDDEDFDFEREFTRLKAELESQIKEE 484


>gi|71065437|ref|YP_264164.1| putative type I restriction-modification system, M subunit
           [Psychrobacter arcticus 273-4]
 gi|71038422|gb|AAZ18730.1| putative type I restriction-modification system, M subunit
           [Psychrobacter arcticus 273-4]
          Length = 529

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 204/549 (37%), Gaps = 70/549 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAFGGSNIDLESFV 73
           +W  A  L G  + +++  ++L    L+ +    E  R  + +  Y              
Sbjct: 21  LWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHIDMVQAY---- 76

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
                 FY  +E   S +     + ++        S I   + + K    D  FS     
Sbjct: 77  -TKDNVFYLPAESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGLT 135

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             K   L  +  N   I        +  +  +YE+ + +F +   +G  +F TP+ VV+L
Sbjct: 136 ASKLAALIDVVNNIDTIGNP----EEDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVNL 191

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    ++  +     + K    +  +GQE
Sbjct: 192 IAEMV-----------EPYQGKIYDPCCGSGGMFVQSIKFIESHHGNTK---DVSIYGQE 237

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +    + IR + S+     +       T  KD     +  + ++NPPF +   
Sbjct: 238 YTSTTYKLAKMNLAIRGISSNLGDVAA------DTFFKDQHEDLKADFIMANPPFNQ--- 288

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                     +  +  R+ G   P   + +  +++H+ +KL       G A  VL++  +
Sbjct: 289 ---KDWRASDELVDDPRWAGYPTPPTGNANYAWILHMISKLSEH----GTAGFVLANGSM 341

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-------- 417
                 SGE EIR+ ++ENDL++ ++ALP  LF+ T I   LW ++  K  +        
Sbjct: 342 ST--TTSGEGEIRQQIIENDLVDCMIALPGQLFYTTQIPVCLWFINKDKQAKSADSKARG 399

Query: 418 ---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD--YRT 472
              R G+   I+A  + + I       + +  D    I   Y +    K +   +     
Sbjct: 400 LRNRSGETLFIDARAIGSMISRT---NKELTKDDIEAIAKTYHAWRGEKEAGGYEAYTDE 456

Query: 473 FGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            GY +   L  ++ + ++L                     ++  L++ + +  Q+     
Sbjct: 457 AGYCKSATLDDMKANDYVLTPGRYV---GAAAIEDDGISFETKMLELSQTLYAQMQASEK 513

Query: 532 AESFVKESI 540
            ++ +++++
Sbjct: 514 LDATIRQNL 522


>gi|242372373|ref|ZP_04817947.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
 gi|242349892|gb|EES41493.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis M23864:W1]
          Length = 518

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 207/548 (37%), Gaps = 74/548 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+    +F   IL     R L   +E T   +  +       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKVEETSGRLLSEDNISYQE 68

Query: 66  NIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114
            ++ + +        +    F    E   S L +       E  I   S+  K +     
Sbjct: 69  AMNNDDYRPIVEKELIQRIGFVIEPENLFSNLKAKIENQTFE--IEDLSNAIKNVENSTR 126

Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158
                      F+D D +S  +RL         L+ K+  N S +      +   ++ + 
Sbjct: 127 GHESEDDFIHLFDDMDLNS--SRLGNTNAARTKLIAKVMMNISTLPFVHSDLEIDMLGDA 184

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  +   ++ D  + L        R++YDPTCG+G 
Sbjct: 185 YEYLIGQFAASAGKKAGEFYTPQQVSTILAKIVTDGKEDL--------RSVYDPTCGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                      +GQE    T+ +    ML+  +        +  I+ 
Sbjct: 237 LLLRVGREAKVRN----------YYGQEYNSTTYNLARMNMLLHDVNF-----KAFQIEN 281

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G TL      G++F   ++NPP+   W  D   ++ E  +         L   S     F
Sbjct: 282 GDTLEDPAHKGEQFDAVVANPPYSANWSADPSFLKDERFSDY-----GKLAPKSKADFAF 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           + H+   L+      G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +L
Sbjct: 337 IQHMIYHLDDE----GTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + +   +K  ++   V  I+A+  +      GK +  + D+   +I+  Y 
Sbjct: 390 FFGTSIPTCVLVF--KKCRQQDDDVVFIDASQSFEK----GKNQNHLTDEDVDKIVKTYS 443

Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            RE   K+S +            +  P  +    ++  +   +     + +     +   
Sbjct: 444 QRETIDKYSYVATLDEIKENDYNLNIPRYVDTFEEEEPIDLEQVQQQLKDIDKDIANVES 503

Query: 517 DILKPMMQ 524
           +I + + +
Sbjct: 504 EINEYLKE 511


>gi|146294000|ref|YP_001184424.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145565690|gb|ABP76625.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 523

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 93/472 (19%), Positives = 176/472 (37%), Gaps = 61/472 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              +   +W  A+ L  +    ++  ++L    L+ +       R+ +  +++       
Sbjct: 2   LDDIKKTLWAAADKLRANVDAAEYKHLVLGLIFLKFVSDTFAARRAELERRFVDVNDDYF 61

Query: 66  ----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFS 108
                         E    +    F+         L +   + N+          I   +
Sbjct: 62  LHDADADFIAEELEERDYYIEVNVFWVPEPARWEGLRANAKQANIGKQIDDALDAIEKEN 121

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167
            + K I +     + +      G L ++    S I    D      ++  +YE+ + +F 
Sbjct: 122 PSLKGILDKRYARAPLPD----GKLGELVDLISTIGFGEDQSKARDILGQVYEYFLGQFA 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP+ +V+   A+L                 +YDP CG+GG    +   +
Sbjct: 178 SAEGKKGGQFYTPQSIVNTLVAVLDPHQG-----------KVYDPCCGSGGMFVQSEKFI 226

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +  +GQE  P T  +    + IR ++ +  R      + G T +K+  
Sbjct: 227 EAHG---GKLGDVSIYGQESNPTTWRLAAMNLAIRGIDFNLGR------EPGDTFTKNQH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +  R  Y L+NPPF                     R+  G P   + +  +L H+   L+
Sbjct: 278 SDLRADYILANPPFNIS-------DWWHGSLEGDPRWVYGNPPQGNANYAWLQHMLYHLK 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + +    + E +IRR +++ D++E +VALP  LFF T I   L
Sbjct: 331 PT----GRAGIVLANGSMSSS--QNTEGDIRRAMVDADVVEVMVALPGQLFFNTQIPACL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           W L+ +KT   +G+V  I+A  L   I      +  ++     +I +   + 
Sbjct: 385 WFLTKQKTAR-KGEVLFIDARKLGKMISRV---QSELDQAAIDRIANTAKAW 432


>gi|68536334|ref|YP_251039.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
 gi|68263933|emb|CAI37421.1| putative DNA restriction-modification system, DNA methylase
           [Corynebacterium jeikeium K411]
          Length = 819

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 110/475 (23%), Positives = 193/475 (40%), Gaps = 76/475 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +WK+A++L G    + +   +L    ++ +                     +
Sbjct: 6   KKSDLYSSLWKSADELRGGMDASQYKDYVLTLLFVKYVSD----------------KAKS 49

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFDFSST 123
                     G SF       L  L  +T+    +   I   ++  + + +  + DF   
Sbjct: 50  DPYSLIEVPEGGSF-----DDLVALKGATDIGEKMNIAIRRLAEANDLQGVINNADFDDP 104

Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +L +       L  +   F  I+        D ++ + YE+L+R F +E  +    F 
Sbjct: 105 -NKLGEGKAMQDRLTNLVSIFQDIDFTGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +   +L  P D           T+YDPTCG+G  L    +           P 
Sbjct: 164 TPAEVSRIMAQVLEIPKD------TPRSTTVYDPTCGSGSLLIKVAD---------SAPN 208

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294
            L  +GQE +  T A+    M++   E       + +I+QG TLS   F      + F Y
Sbjct: 209 GLSIYGQEKDNATWALSRMNMILHGNE-------THDIRQGDTLSDPKFLRGEQLQTFDY 261

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF  K  K          + E GRF G   P   +G   FL+H+   L+      
Sbjct: 262 FVANPPFSVKTWK-------NGFDKEYGRFEGFAEPPEKNGDYAFLLHMVKSLKSD---- 310

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A++L    LF G     E++IR  L+   LI+AI+ LP +LF+ T I   + ++  +
Sbjct: 311 GRGAVILPHGVLFRGNT---EAQIREELIRRGLIKAIIGLPANLFYGTGIPACIIVIDKK 367

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           +   R G + +++A+  +     +G K R +     R+I+D Y++ E  +    +
Sbjct: 368 EAANRTG-IFMVDASKGFE---KDGAKNR-LRPRDMRKIIDTYLAGEEVERYARM 417


>gi|332292955|ref|YP_004431564.1| type I restriction-modification system, M subunit [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171041|gb|AEE20296.1| type I restriction-modification system, M subunit [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 531

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 96/489 (19%), Positives = 187/489 (38%), Gaps = 72/489 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M E       L   +W  A  L G     DF   IL F   + L   ++   + + E   
Sbjct: 1   MAEDAK--QQLEQQLWNIANTLRGKMDADDFRDYILGFIFYKYLSTKMDMYANRILEPDG 58

Query: 58  ----KYLAFGGSNIDLESFVKVA--GYSFYNTSEYSLSTL--------GSTNTRNNLESY 103
               +          +E+    A     ++       S L         +     +L   
Sbjct: 59  LTFQQVEGHEQEAAYMEAIKDAALDKLGYFLLPSELFSELARRGNAGCKNQFILGDLAKV 118

Query: 104 IASFSDNAKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVP 151
           +     +      + DF +    L            +K  L+ K+  +   I+       
Sbjct: 119 LTHIEQSTMGSESEEDFGNLFEDLDLTSSKLGKSENDKNELIVKVLSHLDEIDFDIANTE 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F S   + A +F TP+ V ++   L+    D         ++++YD
Sbjct: 179 SDLLGDAYEYLIGQFASGAGKKAGEFYTPQQVSNILAQLVTVGKD--------RLKSVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      V +  +          +GQE+ P T+ +C   M++  +       
Sbjct: 231 PTCGSGSLLLRVAKQVKEVSA---------FYGQEMNPTTYNLCRMNMIMHDVH-----Y 276

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +I+   TL +     +RF   ++NPPF  KW      +  +            L   
Sbjct: 277 KRFDIKNEDTLERPQHLDQRFEAIVANPPFSAKWSASPLFMSDDRFANY-----GKLAPS 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           S     F+ H+ ++L       G  A+VL    LF G A   E  IR++L+++ + ++A+
Sbjct: 332 SKADFAFVQHMVHQLAD----NGTMAVVLPHGVLFRGGA---EGHIRKYLIKDRNYLDAV 384

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +L  +K    +  +  I+ +  +  ++     +  + ++   
Sbjct: 385 IGLPANIFYGTSIPTCILVL--KKERVHKDNILFIDGSQHFEKVKT----QNYLREEDIT 438

Query: 451 QILDIYVSR 459
           +++D Y S 
Sbjct: 439 KLIDTYKSY 447


>gi|86149451|ref|ZP_01067682.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596435|ref|ZP_01099672.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612527|ref|YP_001001194.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167006086|ref|ZP_02271844.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|218563146|ref|YP_002344925.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|19881206|gb|AAM00822.1|AF486544_5 HsdM3 [Campylobacter jejuni]
 gi|19881245|gb|AAM00854.1|AF486551_5 HsdM [Campylobacter jejuni]
 gi|19881287|gb|AAM00889.1|AF486558_5 HsdM [Campylobacter jejuni subsp. jejuni 81-176]
 gi|85840233|gb|EAQ57491.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|87249780|gb|EAQ72739.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|88191276|gb|EAQ95248.1| type I restriction-modification system specificity subunit
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360852|emb|CAL35653.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|284926752|gb|ADC29104.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni IA3902]
 gi|315926723|gb|EFV06101.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929701|gb|EFV08876.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 500

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 103/546 (18%), Positives = 194/546 (35%), Gaps = 64/546 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L + +WK+A+ L  +    ++  ++L    LR +  +       + ++           
Sbjct: 8   KLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDAD 67

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSS 122
           E     A   F+   +   + +        +          I   +D  K +        
Sbjct: 68  EYL---ADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKD 124

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            +     +  L ++      I          V+ +++E+ +  F     +    F TP+ 
Sbjct: 125 NL----DSKCLGELIDLIGNIAF-DTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKC 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   +L                 ++DP CG+GG    +   V            +  
Sbjct: 180 VVELLVTML-----------EPYKGRVFDPCCGSGGMFVQSEEFVKSH---QGRLDDISI 225

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T+ +    + IR++ES      ++      +   D     +  + ++NPPF 
Sbjct: 226 YGQESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFN 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +            GR+  G+P  S+ +  ++ H    L      GG A  VL+ 
Sbjct: 281 DSDWSGE-------LLENDGRWKYGVPPASNANYAWIQHFLYHLSPN---GGVAGFVLAK 330

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L +      E+ IR+ L+E+DLI+ IV LP  LF  T I   LW +  +K  +   K 
Sbjct: 331 GALTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKT 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKV 480
             I+A DL T      ++ + +N D   QI +IY + +NG      DY    G+ + + +
Sbjct: 389 LFIDARDLGT---RINRRNKTLNKDDINQIANIYKAWKNG-----TDYEDIKGFCKSVSI 440

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                +S++L       L             +  +      ++ ++      E  + E I
Sbjct: 441 DEIRELSYVLTPGRYVGLADS--------DDEFDFDTRFNELLAKLKSQIKTEQELSEII 492

Query: 541 KSNEAK 546
             N  K
Sbjct: 493 LKNLEK 498


>gi|164688031|ref|ZP_02212059.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM
           16795]
 gi|164602444|gb|EDQ95909.1| hypothetical protein CLOBAR_01676 [Clostridium bartlettii DSM
           16795]
          Length = 524

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 118/545 (21%), Positives = 205/545 (37%), Gaps = 79/545 (14%)

Query: 1   MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE    +     L   +W+ A DL G+ +  +F   IL     R L          + E
Sbjct: 1   MTESQQQSQHQKELHARLWEMANDLRGNMEAYEFKNYILGMIFYRYLSDKTTAFVEKLLE 60

Query: 58  KYL-----AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIAS 106
           +       AF       +   ++     +      L +       NN      L   I S
Sbjct: 61  EDEVDYRGAFNDEEYKEDLIEEMLESLGFVIEPDDLFSEMVKKVENNSFDIEDLHEAINS 120

Query: 107 FSDNA---------KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPD 152
            +++          + +F+D D SST  +L K     + L+ KI      IE   D    
Sbjct: 121 LTESTLGRPSQDAFEGLFDDMDLSST--KLGKDVSTRSKLMAKIISAIDSIEFGIDETSI 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ + YE+LI +F +   + A +F T      L   L       +         +  DP
Sbjct: 179 DVLGDAYEYLIGQFAANAGKKAGEFYTATGPAELLCRLTTIGLTDVL--------SAADP 230

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     +            +    GQEL   T+ +    M++  +        
Sbjct: 231 TCGSGSLLLRLNKYA----------NVRTFFGQELTSTTYNLARMNMILHGVPYQNFT-- 278

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
              I  G TL +D F   +F   ++NPP+  KW  DK   + E       RF     L  
Sbjct: 279 ---IYNGDTLEEDHFEENKFRIQVANPPYSAKWSADKRFEQDE-------RFSVYGKLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389
            S     FL H+   ++      GR AI+L    LF G A   E +IRR+++E  + ++A
Sbjct: 329 KSKADFAFLQHMIYHMDDD----GRIAILLPHGVLFRGAA---EEKIRRYIIEEQNYLDA 381

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LFF T+I   + +L   +  + +  +  I+A+  +      GK +  +  +  
Sbjct: 382 VIGLPANLFFGTSIPVCILVLKKDR-ADNKDNIFFIDASKEFE----SGKNQNRLRREDI 436

Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +I+D Y+ RE+ + ++              +  P    ++        ++ D  +  L+
Sbjct: 437 NKIVDTYIKREDVEKYAHKATMDEIAENDFNLNIP---RYVDTFEEEPEVDLDKEFEALA 493

Query: 509 PLHQS 513
              + 
Sbjct: 494 ECMRK 498


>gi|323497665|ref|ZP_08102681.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326]
 gi|323317248|gb|EGA70243.1| hypothetical protein VISI1226_13466 [Vibrio sinaloensis DSM 21326]
          Length = 538

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 102/464 (21%), Positives = 183/464 (39%), Gaps = 54/464 (11%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  + +       + ++++ F +
Sbjct: 21  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRQQMID---DEQEAFVEMKEFYQ 77

Query: 75  VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127
                FY    S +S         N    +++    I   + + K    D  FS     +
Sbjct: 78  Q-DNIFYLEEASRWSYVKKHAKQDNIAVIIDTALSNIEKANPSLKGALPDNYFSRQDLEV 136

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +K   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+ VV L 
Sbjct: 137 KKLASLIDTIENIDTLANECDMSEEDLVGRVYEYFLGKFAATEGKGGGEFYTPKSVVTLL 196

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
           T +L                 +YDP CG+GG    ++  V       K    +  +GQEL
Sbjct: 197 TEML-----------EPFQGKIYDPACGSGGMFVQSLKFVKQHEGRTK---DIAIYGQEL 242

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    + IR L  +         +   T   D     +  Y ++NPPF     +
Sbjct: 243 TSTTYKLAKMNLAIRGLSGNLGE------RPADTFFADQHKDLKADYIMANPPFNISQWR 296

Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           D      E++  +  RF G   P   + +  +++H+ +KL      G   A   + S   
Sbjct: 297 D------ENELTKDPRFSGYRTPPTGNANYGWILHMLSKLSETGTAGFVLA---NGSMSS 347

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-------RR 419
           N    SGE EIR+ L+END++E ++ALP  LF+ T I   +W ++  K          R 
Sbjct: 348 N---TSGEGEIRQQLIENDVVECMIALPGQLFYSTQIPVCIWFITKNKQANAAKGYRQRE 404

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +   I+A ++ T      K    +  D    I D Y +  +  
Sbjct: 405 KETLFIDAREMGTMTSRVHK---ELTVDDIALIADTYHAWRSDD 445


>gi|253569549|ref|ZP_04846959.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841568|gb|EES69649.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 498

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 104/466 (22%), Positives = 179/466 (38%), Gaps = 54/466 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L NF+++    L G     +F   I P    +R+    +       E+      S  D
Sbjct: 15  QNLYNFLFEACNILRGPVSQDNFKDYITPILYFKRISDVYDEETQTALEE------SGGD 68

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY---IASFSDN-AKAIFEDFDFSS 122
            E       + F        S +     N    +      I   + +    +   F    
Sbjct: 69  EEYASLPEQHRFVIPDGCHWSDIRERSENLGAAIVGAMRGIELANPDTLYGVLSMFSAQK 128

Query: 123 TIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              +   +   +  + ++ S   L  +  P  +M + YE L+++F  +    A +F TPR
Sbjct: 129 WTDKKNLSDGKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGEFYTPR 188

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L   +L           P    T+YDP CG+GG L +A+ H+     +H       
Sbjct: 189 SVVSLLVRIL----------DPKPGETVYDPACGSGGMLIEAVQHM-----NHSSLCCGS 233

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYCLS 297
             GQE      A+    + +             NI QG TL            +F   ++
Sbjct: 234 IFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRSPKILQNGEIAKFDCVIA 286

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF       +     E  + + GR   G P  S G   ++ H+   +    +G GR A
Sbjct: 287 NPPFSL-----EKWGSVEWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASGNGRMA 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+    LF G     E  IR  L+++DLIEA+V L   LF+ T ++    IL   K   
Sbjct: 339 VVMPQGVLFRGNE---EGRIREKLVKSDLIEAVVTLGDKLFYGTGLSPCFLILRRLKPAA 395

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              +V +I+ T + T  R     + I++ +   ++ ++Y++ E+ +
Sbjct: 396 HSARVLMIDGTKILTVKRA----QNILSPENVDRLYELYINYEDVE 437


>gi|57865903|ref|YP_190015.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis RP62A]
 gi|57636561|gb|AAW53349.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis RP62A]
          Length = 518

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 109/533 (20%), Positives = 204/533 (38%), Gaps = 69/533 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   + + ++       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 66  NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114
             + E++ +           F    +   S L         E       I    ++ +  
Sbjct: 69  AWEDEAYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             + DF    A ++            +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++              ++ +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +   +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G++F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNHLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +      GK + ++ D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNLLTDEDVDKIVETYRNRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
             KFS ++           +  P    ++        ++ D   ++LS + + 
Sbjct: 448 IDKFSYVVSLDEIIENDYNLNIP---RYVDTFEEEEPIDLDQVQQQLSDIDKE 497


>gi|225619379|ref|YP_002720605.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1]
 gi|225214198|gb|ACN82932.1| N-6 DNA methylase [Brachyspira hyodysenteriae WA1]
          Length = 500

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 106/523 (20%), Positives = 203/523 (38%), Gaps = 60/523 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + +   +   +W  ++ L G+   +++  VIL    L+ +    E   + + ++     G
Sbjct: 4   SENDKDIKKELWAASDKLRGNIDASEYKHVILGLVFLKYISDKFEIRYNELVKE-----G 58

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFED 117
            ++  ++        FY   E     + S    + + + I          +   K I   
Sbjct: 59  FDMQDDAEAYREKNIFYLPEESRFDYISSHARSDEIGAIIDEAMLKIEENNKKLKGILPK 118

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                 + +      L +I   FS I++      D  + N+YE+ + +F +   +   +F
Sbjct: 119 NYSRPELDK----RRLGEIIDLFSNIKIANKNKKDI-LGNVYEYFLSQFATAEGKRGGEF 173

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +V L   +L                 +YDP CG+GG    +   +          
Sbjct: 174 YTPSPIVKLLVEIL-----------EPYKGRIYDPCCGSGGMFVQSAKFLEAHSESVN-- 220

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +GQE  P T  +C   + I  ++ +  ++ +       T  +DL    +  Y L+
Sbjct: 221 -NISVYGQESNPTTWKLCNMNVAIHGIDGNLGKNNA------DTFFEDLHKNLKADYILA 273

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF                  +  R+  G+P   + +  +L H+A+KL       G+A 
Sbjct: 274 NPPFNMSDWGADA-------LKDDYRWKWGIPPNGNANYGWLSHIASKLSES----GKAG 322

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL++  L      SGE  IR+ ++++DLIE I++LPT LF  T I   LW L+  K  +
Sbjct: 323 VVLANGSLST--QTSGEGLIRQNMIKDDLIECIISLPTQLFISTQIPVSLWFLNKDK--K 378

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           ++G +  I+A +           +R+++DD    I     S + GK  + +     GY +
Sbjct: 379 QKGHILFIDARNYGRMESRV---QRVLDDDDIEAIAKTVHSWQKGKGYKDI----KGYCK 431

Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              +    +  +IL       LE +    +          + L
Sbjct: 432 SASLEEISKEDYILTTGRYVGLEEEDNKEEDFDAKMKVLTEEL 474


>gi|116669552|ref|YP_830485.1| N-6 DNA methylase [Arthrobacter sp. FB24]
 gi|116609661|gb|ABK02385.1| N-6 DNA methylase [Arthrobacter sp. FB24]
          Length = 527

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 110/567 (19%), Positives = 194/567 (34%), Gaps = 86/567 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EK 58
              +L   +W  A+ L G+ + +++  V+L    L+ +    E  R A+         E+
Sbjct: 8   KVKTLEQRLWDTADALRGNQEPSEYKHVVLGLVFLKYISDRFEERRRAIETSLSDPNSEE 67

Query: 59  Y--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLE---SYIASFSD 109
           Y       S    +     +   F+         L            L+     I   + 
Sbjct: 68  YIPNEARRSEFLEDRDEYASHNVFWVPELARWGYLQDNAKLPKIGQQLDQAMDLIEKENP 127

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFG 167
             + +         + +      L ++      I      D   D V+  +YE+ + +F 
Sbjct: 128 IIRGVLPRNYGREGLDK----SRLGQLVDLIGSIGFTESDDHGSDDVLGRVYEYFLGQFA 183

Query: 168 -SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E  + A  F TPR VV     +L                 +YDP CG+GG    +   
Sbjct: 184 GKETGKDAGAFYTPRSVVKTLVEML-----------EPFHGRVYDPACGSGGMFVQSAEF 232

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   G        +  +GQE    T  +    + +R +E+D         +   + ++DL
Sbjct: 233 VTAHGGE---RTDISVYGQEFTDTTWKLAKMNLALRGIEADLGD------RSADSFTQDL 283

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               R  + ++NPPF               K  +  R+  G P   + +  ++ H  + L
Sbjct: 284 HRDLRADFIIANPPFNVSNW-------WNAKLADDPRWKYGTPPEGNANFAWVQHFLHHL 336

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G A  VLS+         SGE EIRR L+E DL++ IVA+P  LFF T I   
Sbjct: 337 SPK----GTAGFVLSNGS--LSSKSSGEGEIRRKLVEADLVDCIVAMPDKLFFNTGIPVS 390

Query: 407 LWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           LW +S  +       R+G+V  I+A+ L        + R + +D    +I   Y +    
Sbjct: 391 LWFISKERHGNGHRARQGEVLFIDASKLGRMENR--RLRVLDDDRDIAKIAGAYHA---- 444

Query: 463 KFSRMLDYRTFGYRRI-------KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
                      GY  +        +    +  F+L               K +       
Sbjct: 445 -----WRNHDGGYEDVPGFVVAATLEEIRQHDFVLTPGRY-------VGTKEAEADWEPV 492

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKS 542
            D +  +  ++Y        ++E ++ 
Sbjct: 493 EDKIARLTGELYAEFERGRKLEEVVRE 519


>gi|223940844|ref|ZP_03632674.1| type I restriction-modification system, M subunit [bacterium
           Ellin514]
 gi|223890494|gb|EEF57025.1| type I restriction-modification system, M subunit [bacterium
           Ellin514]
          Length = 496

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 103/546 (18%), Positives = 187/546 (34%), Gaps = 75/546 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              +    W   +   G      +   IL    L+ L           +++         
Sbjct: 6   QDQINQVAWNACDTFRGTIDPAQYKDYILVTLFLKYLSDVWLD-----KKEEYEKEFKGD 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFD 119
              +  ++A   F         TL    +  N+   I    +  +         +F + D
Sbjct: 61  AERAKRRLARERFILPDGCDFYTLYGKRSEANIGELINVALEQIEDANKTKLEGVFRNID 120

Query: 120 FS---STIARLEKAGLLYKICKNFS--GIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEG 173
           F+   +     E+   L  + + F+   ++L P  V    ++ N Y++LI  F S+  + 
Sbjct: 121 FNSEANLGQTKERNKRLKSLLEKFAVEELDLRPSRVGKQDIIGNTYQYLIGHFASDAGKK 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP +V  L   LL          +P     + DPTCG+G  L    + V D    
Sbjct: 181 GGEFYTPGEVSELLAKLL----------APKKGSRICDPTCGSGSLLIQVGDEVGDN--- 227

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TG 289
                    +GQE+   T A+C   ML+   +       +  I+ G T++        + 
Sbjct: 228 -----DFSLYGQEMNGSTWALCRMNMLVHNKD-------AARIEWGDTINNPKLIERDSL 275

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   ++NPPF        D         +  RF  G+P  S G   F+ H+    E  
Sbjct: 276 MKFDIVVANPPFSL-----ADWGADSADADKFHRFHRGVPPKSKGDYAFISHMV---ETA 327

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
             G G+  ++     LF G A   E  IR+  +E +++EA++ LP  LFF T I   + I
Sbjct: 328 IEGTGKVGVIAPHGVLFRGGA---EERIRKAFIEENVLEAVIGLPEKLFFGTGIPAVILI 384

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            +  K  +    V  I+A+  +    N    +  ++ D   +I+  Y + +         
Sbjct: 385 FNKGKNTK---DVLFIDASREFVEDTN----QNKLSQDHITKIVATYAAFK--------- 428

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                  R    +     F L+               L  +        ++    +    
Sbjct: 429 TVDKYAYRATPEQIDENDFNLNIPRYVDTFEPEKPVNLKAVQNDIDDLEIELARVRKQMA 488

Query: 530 GWAESF 535
           G+ +  
Sbjct: 489 GYLKEL 494


>gi|209527338|ref|ZP_03275846.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209492196|gb|EDZ92543.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 497

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 95/493 (19%), Positives = 181/493 (36%), Gaps = 62/493 (12%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
           + G     ++  V L    L+ +  A +     +  +           +    V    F+
Sbjct: 1   MRGHMDAAEYKHVTLGLIFLKYISDAFQERYDDLAARQE--TDYTDPEDRDEYVGENMFW 58

Query: 82  NTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
              E   ST+ ++  + ++          I   +   K +         + +      L 
Sbjct: 59  VPQEARWSTIQASAKQPDIGKRIDEAMLAIEKENPRLKGVLPSNYNRPDLDK----QRLG 114

Query: 135 KICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           ++    S I L   +     ++  +YE+ + +F  +  +G  +F TP+ VV L   ++  
Sbjct: 115 ELIDLISTIGLGDAENRSKDILGRVYEYFLGQFAEKEGKGGGEFYTPQSVVRLLVEMI-- 172

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
                    P   R +YDP CG+GG    +   V   G        +  +GQE  P T  
Sbjct: 173 --------QPYKGR-IYDPCCGSGGMFVQSEKFVEAHGGRKG---DIAIYGQESNPTTRR 220

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +C+  + IR ++ +         +Q  + + DL    +  Y L+NPPF            
Sbjct: 221 LCLMNLAIRGIDGNIGD------RQADSFTNDLHKDLKADYILANPPFNIS-------DW 267

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              K  E  R+  G P   + +  ++ H+ + L      G   A   + S   N    SG
Sbjct: 268 WNEKLAEDVRWQYGTPPKGNANYAWIQHIIHHLAPNGIAGFVLA---NGSMSSN---QSG 321

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----------EERRGKVQ 423
           E +IR+ L+ +DL++ ++ALP  LF+ T I   LW ++  K+            R+G+  
Sbjct: 322 EGDIRKALIASDLVDCMIALPGQLFYTTQIPACLWFVARDKSGKPTAGHKPCRNRKGQTL 381

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLR 482
            I+A  L   I       R + D++  +I   Y +      +   +    G+ +   +  
Sbjct: 382 FIDARKLGVLIDRT---HRELIDEELARIAGTYQAWRGESGADEYEDLP-GFCKSATLEE 437

Query: 483 PLRMSFILDKTGL 495
                ++L     
Sbjct: 438 IASHGYVLTPGRY 450


>gi|49658897|emb|CAF28523.1| putative HsdM-like N-methyl transferase [Yersinia
           pseudotuberculosis]
          Length = 568

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 108/592 (18%), Positives = 192/592 (32%), Gaps = 110/592 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M          L N  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQLFLNELDNKFWKAADKLRSNMDAANYKHVVLGLIFLKYVSDAFEARQQELITLF 60

Query: 57  --------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95
                               E+Y       +++E +       F+        TL +   
Sbjct: 61  RDVGNPDNIYAISRDDYATDEEYAQAIQEELEVEDYY-TEKNVFWVPKAARWETLKNKAT 119

Query: 96  -----------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
                                    +N    I   +   K I                 +
Sbjct: 120 LPVGTVLWVDELGQEVKLRSVSWLIDNALDKIEDANPKLKGILNRIGQYQLG-----NEV 174

Query: 133 LYKICKNFSGIELHPDTV--------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           L  +   FS    +               ++ ++YE+ + +F     +    + TP+ +V
Sbjct: 175 LIGLINTFSDANFNNPEYNGEKLQLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIV 234

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPI 239
            L   +L           P   R +YDP  G+GGF   +   + +          +    
Sbjct: 235 TLIVEML----------QPYKGR-VYDPAMGSGGFFVSSDRFIEEHAGEKHYNVAEQKRN 283

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE  P T  +    M IR ++ +  +      +   TL  D     R  + ++NP
Sbjct: 284 ISVYGQESNPTTWKLAAMNMAIRGIDFNFGK------KNADTLLDDQHPDLRADFVMANP 337

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K            K     R+  G P   + +  ++ H+ + L      G  A ++
Sbjct: 338 PFNMKEW-------WSAKLEGDVRWQYGTPPQGNANFAWMQHMIHHLAPK---GSMALLL 387

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
            + S   N      E EIRR L+E DL+E +VALP  LF  T I   +W+L+  KT    
Sbjct: 388 ANGSMSSNTNN---EGEIRRNLIEADLVECMVALPGQLFTNTQIPACIWLLTKDKTGGNG 444

Query: 416 -EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              R+G+V  I+A  + +   R      R    D   +I D + + +  K     D   F
Sbjct: 445 KAHRKGEVLFIDARQIGFMRDRVL----RDFTKDDIAKIADTFHAWQEDK--DYQDEAGF 498

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +    +    +  F+L               +      +     LK  +++
Sbjct: 499 CFAA-TLEDIKKNDFVLTPGRYVGAAEQDEDSEPFAEKMTRLTQQLKVQLEE 549


>gi|149185165|ref|ZP_01863482.1| type I restriction-modification system, M subunit [Erythrobacter
           sp. SD-21]
 gi|148831276|gb|EDL49710.1| type I restriction-modification system, M subunit [Erythrobacter
           sp. SD-21]
          Length = 517

 Score =  309 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 104/544 (19%), Positives = 193/544 (35%), Gaps = 78/544 (14%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKV 75
           W   +   G    + +   IL F   + L       R A  ++Y     +        ++
Sbjct: 14  WDACDTFRGTIDPSAYKDYILVFLFWKFLSDLWADERKAAEDQY-----AGDSERVARRL 68

Query: 76  AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--------KAIFEDFDFS---STI 124
           + + F      S   L      +N+   +    +          + +  + D++   +  
Sbjct: 69  SRFRFQIPEGSSFHDLYPNRNADNIGEQVNVALEAIEQANIAKLEGVLSETDYNSRTNLG 128

Query: 125 ARLEKAGLLYKICKNFSGIE-------LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
              ++   +  +  NF+             +   + V+   Y +LI RF S+  + A +F
Sbjct: 129 ETADRNRRIKDLFDNFARPALDFSPSRFGGEDNAEDVIGETYIYLISRFASDAGKKAGEF 188

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKI 236
            TPR V  L   L            P     + DP CG+   L  A  +VA   G  H  
Sbjct: 189 FTPRKVSELLVRL----------ADPQPGNKILDPACGSSTLLVRAAEYVAGIEGKEHAS 238

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
                  GQE   +T A+    M +  L+       +  I+ G TL+   F       RF
Sbjct: 239 QANAQVFGQEATNQTQALARMNMFLHGLD-------NARIEWGDTLTNPKFVNGDALMRF 291

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF  K    + A +         R+  G+P  S G   F+ H+    +     
Sbjct: 292 DRIIANPPFSLKKWGHEVAGDDRF-----NRYHRGVPPKSRGDYAFISHMVESAKPRE-- 344

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR A++     LF   A   E +IR+ L+E +L++ +V LP  LF  T I   + I   
Sbjct: 345 -GRVAVIAPHGVLFRSGA---EGKIRQALIEENLLDGVVGLPAQLFPSTGIPVCMVIFDR 400

Query: 413 RKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            + +    E    V  I+A+  +      GKK+  ++ D   +I+D + +RE+ +    +
Sbjct: 401 AREKGGAREDADDVLFIDASREFVP----GKKQNELSKDHLNKIVDTWRAREDVERYASV 456

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                    I   +     + L+           T+     +  +     ++ + +++  
Sbjct: 457 ---------ITREQIAENGYNLNIPRYV-----DTFEPEEEIDIAAVQAEIEELEKELAE 502

Query: 529 YGWA 532
               
Sbjct: 503 TRQK 506


>gi|192362278|ref|YP_001984093.1| type I restriction-modification system specificity subunit
           [Cellvibrio japonicus Ueda107]
 gi|190688443|gb|ACE86121.1| type I restriction-modification system specificity subunit
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score =  309 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 98/544 (18%), Positives = 194/544 (35%), Gaps = 61/544 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           TE       L   +WK A+ L  +    ++  V+L    L+ +  + E     +++    
Sbjct: 6   TEKPTKTEPLEKQLWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFEELHIKLKKGKGD 65

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
           + G++ + +   K     F+   +   S L     + ++          I   + + K +
Sbjct: 66  YVGADPEDKDEYKAE-NIFFVPRKARWSFLLGKAKQPDIGLHVDAAMDAIEKENPSLKGV 124

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEG 173
                    +        L  +    S I L         V+ +++E+ +  F     + 
Sbjct: 125 LPKVYARQNL----DPTSLGGLIDLVSNIALGDAKARSADVLGHVFEYFLGEFALAEGKQ 180

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TPR +V L  A+L                 ++DP CG+GG    +   V +    
Sbjct: 181 GGQFYTPRSIVELLVAML-----------EPYKGRVFDPCCGSGGMFVQSEKFVEEHQGR 229

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE    T  +    + IR +++   +  ++      +   D     +  
Sbjct: 230 VN---DISIYGQESNQTTWRLAKMNLAIRGIDASQVKWNNEG-----SFLNDAHKDVKAD 281

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNG 352
           Y ++NPPF       +            GR+  G P    + +  +L H    L      
Sbjct: 282 YIIANPPFNVSDWSGE-------LLRTDGRWKYGPPPPLGNANFAWLQHFIYHLAPK--- 331

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G+A +VL+   L +    SGE EIR+ L+ E +LI+ IV LP  LF  T I   LW ++
Sbjct: 332 -GKAGVVLAKGALTS--KTSGEGEIRKALIAEGNLIDCIVNLPAKLFLNTQIPAALWFMN 388

Query: 412 NRKTEE-------RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             +          R+ ++  I+A +L   I     + R ++ D   +I  +Y +   G+ 
Sbjct: 389 RARGSSSKSSGHPRKSEILFIDARNLGHLINR---RTRELSHDDINKIAGVYHNWRTGEG 445

Query: 465 SRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                    G+   + + R   + ++L       L  +      +    +   +    + 
Sbjct: 446 EYE---DVKGFCASVSLERVAELDYVLTPGRYVGLPEEEDDFNFAERFAALKAEFEAQLK 502

Query: 524 QQIY 527
           ++  
Sbjct: 503 EEAK 506


>gi|319400012|gb|EFV88254.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis FRI909]
          Length = 518

 Score =  309 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 202/544 (37%), Gaps = 66/544 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   + + ++       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 66  NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114
               E + +           F    +   S L         E       I    ++ +  
Sbjct: 69  AWKDEEYREALQQELINLIGFVIEPQDLFSHLIQKIESQTFEIEDLHKAINKIEESTRGE 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             + DF    A ++            +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++              ++ +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +   +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G +F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGGKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LF+ T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +      GK + ++ D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNLLTDEDVDKIVETYRNRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             KFS +            +  P  +    ++  +   +       +     +  L+I +
Sbjct: 448 IDKFSYVATLDEIKDNDYNLNIPRYVDTFEEEEPIDLDQVQQQLSDIDKEIANVELEINE 507

Query: 521 PMMQ 524
            + +
Sbjct: 508 YLKE 511


>gi|121583502|ref|YP_973928.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
 gi|120596752|gb|ABM40186.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
          Length = 517

 Score =  309 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 102/539 (18%), Positives = 193/539 (35%), Gaps = 63/539 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------EKYL 60
              +   +W  A+ L  +    ++  ++L    ++ +       R+ +        + Y 
Sbjct: 2   LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTARLTNPADAYY 61

Query: 61  AFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLES-------YIASFS 108
               +  D+E+ ++   Y     +F+        +L +   + ++          I + +
Sbjct: 62  YGDAAPEDIEAELEDRDYYKEVNAFWVPEAARWESLRAAAKQVDIGKRIDDALSLIEAEN 121

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFG 167
              K I +     + +      G L ++    S I    +      V+  +YE+ +  F 
Sbjct: 122 PTLKGILDKRYARAQLPD----GKLGELVDLISTIGFGDNPSTARDVLGQVYEYFLGMFA 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP  +V    A+L                 +YDP CG+GG    +   +
Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAILGPH-----------SGKVYDPCCGSGGMFVQSEKFI 226

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +  +GQE  P T  +    + IR ++ +  +      + G T +++  
Sbjct: 227 EAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGK------EPGDTFTRNQH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R  + L+NPPF                     R+  G P   + +  +L H+ + L+
Sbjct: 278 PDLRADFILANPPFNIS-------DWWHGSLMGDARWVHGDPPPGNANYAWLQHMLHHLK 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + +    + E +IR  ++E D++E +VALP  LFF T I   L
Sbjct: 331 PT----GRAGIVLANGSMSSS--QNSEGQIRAAMVEADVVEVMVALPGQLFFNTQIPACL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
           W L  +KT   +G+V  I+A  L T I      +    D    +I     +         
Sbjct: 385 WFLVKQKTHR-KGEVLFIDARKLATMISRV---QSEFTDAVIERIAATVAAWRGEADAGE 440

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             D   F  R +K+    +   +L        EA     +          + L   M +
Sbjct: 441 YRDTLGFC-RSVKLAEIAQHGHVLTPGRYVGAEAVEDNDEDFATKMQQLTEKLGEQMAR 498


>gi|215486218|ref|YP_002328649.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215264290|emb|CAS08643.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 812

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 191/483 (39%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120
                    V   G SF       +  L +     + +   I   ++    K + ++ DF
Sbjct: 45  YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  + V  D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMIDRLSKLVGIFEGLDLSSNRVEGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T+YDPTCG+G  L            + +
Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPRDATVYDPTCGSGSLL---------LKVNDE 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               L   GQE++  T A+    M++         + +  I QG+TLS   +       K
Sbjct: 204 ARRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K   +        K     RFG G+P   +G   FL+H+   L+   
Sbjct: 257 AFDFAVANPPFSNKNWTNGLTP----KKDPFERFGWGIPPEKNGDYAFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  L++   I+ ++ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469
                  R+G + +I+A+  +     +G K R +      +I+D++   R    +SRM+ 
Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSQDIHRIVDVFNHQRTVPGYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 SSE 423


>gi|212703156|ref|ZP_03311284.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098]
 gi|212673422|gb|EEB33905.1| hypothetical protein DESPIG_01197 [Desulfovibrio piger ATCC 29098]
          Length = 517

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 188/529 (35%), Gaps = 57/529 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +W  A+ L  +    ++  V+L    L+ +  A E   + +      + G++   +
Sbjct: 13  LEKQLWSAADKLRKNIDAAEYKHVVLGLIFLKYISDAFEALHATLTAGEGEYEGAD-PED 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSST 123
               +A   F+       S L     + ++          I   +     +         
Sbjct: 72  RDEYLAQNIFFVPVSARWSHLRDHAKQPDIGVLLDKAMEAIEQENSELAGVLPKVYAR-- 129

Query: 124 IARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              L+ A  L  +    S I           V+ +++E+ +  F     +    F TPR 
Sbjct: 130 -PNLDPAN-LGGLIDLVSNIAFGDTPEQSADVLGHVFEYFLGEFALAEGKKGGQFYTPRS 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L  A+L                 + DP CG+GG    +   V +      +   L  
Sbjct: 188 IVELLVAML-----------EPFRGRVMDPCCGSGGMFVQSEQFVREH---QGMLEDLSL 233

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR ++S      ++      +   D     R  Y L+NPPF 
Sbjct: 234 YGQESNQTTWRLAKMNLAIRAIDSSQVLWNNEG-----SFLHDAHPDVRVEYILANPPFN 288

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                               R+  G+P   + +  ++ H  + L       G+A +VL+ 
Sbjct: 289 DSDWSGD-------LLQNDARWQYGVPPAGNANFAWMQHFIHHLSPR----GQAGVVLAK 337

Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT----EE 417
             L +    +GE +IRR ++E  +L++ IV LP  LF  T I   LW L+  +      +
Sbjct: 338 GSLTS--KTNGEGDIRRRMIEEGNLVDCIVNLPAKLFLNTQIPACLWFLARDRKNGPFRD 395

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR- 476
           R G++  I+A ++   I     + RI+  +    I + Y +  N   +        G+  
Sbjct: 396 RSGEILFIDARNMGQLINR---RTRILTAEDIATISNAYHNWRNPDGAYE---DVKGFCA 449

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            + + R   + ++L       L  +      +    S   ++   + ++
Sbjct: 450 AVPLSRVAELDYVLTPGRYVGLPDEEDDFDFAERFASLKQELAAQLEEE 498


>gi|258513099|ref|YP_003189355.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256635002|dbj|BAI00976.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256638057|dbj|BAI04024.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256641111|dbj|BAI07071.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256644166|dbj|BAI10119.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256647221|dbj|BAI13167.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256650274|dbj|BAI16213.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256653265|dbj|BAI19197.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256656318|dbj|BAI22243.1| type I DNA methyltransferase M subunit HsdM [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 537

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 108/545 (19%), Positives = 194/545 (35%), Gaps = 67/545 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L  + + +D+  V L    LR +  A E   + +              +    +A 
Sbjct: 41  AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM-----LEDPEAAEDPDEYLAE 95

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129
             F+       S L       N+          I   +    K +         +  +  
Sbjct: 96  NIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALDTV-- 153

Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
             +L ++    S I +   D     V+  +YE+ +  F     +   +F TP  VV    
Sbjct: 154 --MLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 211

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++L                 +YDP CG+GG    +   V   G        +  +GQE  
Sbjct: 212 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 257

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306
             T  +    + +R + +D        I+  +  +  +D     RF Y L+NPPF     
Sbjct: 258 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 307

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                        E  R+  G P   + +  +L H+   L       G A +VL++  + 
Sbjct: 308 -----DWWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSMS 358

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
           +    + E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K      +RRG++
Sbjct: 359 SN--QNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKNPKGWRDRRGEI 416

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481
             I+A  L   +      RR + D+   +I D Y +    K +   +    G+ +   + 
Sbjct: 417 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKNAGKYEDIP-GFCKSATLD 472

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
              +  F+L        E      + S      +  + K + +Q        + +  S+K
Sbjct: 473 EVEQHGFVLTPGRYVGAEEA---EEDSVPFTERFAALEKTLKEQFAQGETLNAKITASLK 529

Query: 542 SNEAK 546
               K
Sbjct: 530 LIVQK 534


>gi|161507538|ref|YP_001577492.1| Type I restriction-modification system modification subunit
           [Lactobacillus helveticus DPC 4571]
 gi|160348527|gb|ABX27201.1| Type I restriction-modification system modification subunit
           [Lactobacillus helveticus DPC 4571]
          Length = 551

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 119/584 (20%), Positives = 220/584 (37%), Gaps = 82/584 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPTRS 53
            E   +   L + ++  A+ L       ++   +L     + L           LE  R 
Sbjct: 3   EEKVLTKKELESALFSAADALRSKMDANEYKNYLLGIIFYKYLSDKMLYHVGEVLEGRRD 62

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSF-YNTSE-YSLSTLGST----------------- 94
              E+         D E        +F Y  S  ++ + + +                  
Sbjct: 63  LSLEENQKIYEEKFDTEDLQDDIKTTFSYTISPEHTFTYILNEINGTARTKDGKIKTFQI 122

Query: 95  -NTRNNLESYIASFSDNAKAIFEDFDFSS---TIARLEKAGLLYKICKNFSGIELHPDTV 150
            +  +      ++   + + +F D    S        ++A  +  + K    +EL     
Sbjct: 123 SDLADAFNDIESTKDSDFEGLFADVQLYSPRLGTNAQKQADTIANVIKAIGDLELVNQVD 182

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + YE+LI++F SE  + A +F TP++V  L T L L         +     T+Y
Sbjct: 183 NKDTLGDAYEYLIKQFASESGKKAGEFYTPQEVSELLTKLTLVDK------NYPEEMTVY 236

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+G  L     ++            +  +GQE+   T+ +    M++  ++S  + 
Sbjct: 237 DPAMGSGSLLLKFKKYIKLANGQADK---IFYYGQEINMSTYNLARMNMILHGVDSSNQE 293

Query: 271 DLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
                +++G TL +D     +  F   + NPP+  KW  +K  ++         RF P  
Sbjct: 294 -----LRRGDTLDEDWPPVSKTMFDAVVMNPPYSLKWSANKGFLQ-------DPRFSPYG 341

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  
Sbjct: 342 VLPPKSKADYAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRKKLLENGS 394

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+A++ LP++LF+ T+I T + +L   KT+     V  I+A+  +   +N    +  + +
Sbjct: 395 IDAVIGLPSNLFYSTSIPTVIVVLKKDKTDRS---VMFIDASKGFEKKKN----QNELRE 447

Query: 447 DQRRQILDIYVSRENGKFS------RMLDYRTF------GYRRIKVLRPLRMSFILDKTG 494
           +  ++ILD Y  RE+ +          ++   F               P+ +  +     
Sbjct: 448 EDIQKILDTYEKREDVERYAHLAKFDEIEENDFNLNIPRYVDTFVPEPPVDLKKVATDLH 507

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
              +E +   R+L  + +    D  + M          E+ + E
Sbjct: 508 ETNVEIEKNQRELVGMLKELTSDDTEIMDGLDAIIKELEAELHE 551


>gi|85859881|ref|YP_462083.1| type I restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
 gi|85722972|gb|ABC77915.1| type I restriction-modification system methylation subunit
           [Syntrophus aciditrophicus SB]
          Length = 515

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 173/471 (36%), Gaps = 52/471 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M        +    ++K A+ L  +    ++  ++L    L+ +  + E     ++E   
Sbjct: 1   MANNNNKTEAFEKTLFKAADKLRKNMDAAEYKHIVLGLIFLKYISDSFEALYEKIKEGKG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113
            F G++ +     +     F+       S L S         +++     I   +   K 
Sbjct: 61  DFEGADPEDPDEYRAE-NVFFVPQAARWSYLHSRAKLPSIGKDVDDAMEAIEKENQTLKG 119

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSE 172
           I         + +      L  +      I L  +      ++  +YE+ +  F +   +
Sbjct: 120 ILPQVYARPNLDKAA----LGGLIDLVGNIALGTEAAKAKDLLGRVYEYFLGEFANAEGK 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP+ +V L   ++                 +YDP CG+GG    +   V +   
Sbjct: 176 KGGQFYTPKSIVRLMVEMI-----------EPFKGRVYDPCCGSGGMFIMSERFVENH-- 222

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                  +   GQE    T+ +C   + IR ++    +  ++      +   D+    + 
Sbjct: 223 -QGKVDDISIFGQESNQTTYRLCRMNLAIRGIDGSQVKWNTEG-----SFLNDVHKDLKS 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +             R+  G+P+ ++ +  +L H+   L      
Sbjct: 277 DFILANPPFNDSDWSGQ-------LLQSDPRWKYGVPQAANANFAWLQHMIYHLSPK--- 326

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G  A VL++  L      + E EIR+ L+ENDL++ IVALP  LF+ T I   LW LS 
Sbjct: 327 -GIMACVLANGSL--SSQTNNEGEIRKSLVENDLVDCIVALPKQLFYNTGIPACLWFLSR 383

Query: 413 RKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           ++      +R  ++  I+A++            R  +DD   +I   Y   
Sbjct: 384 KRAGNGDRKRSSEILFIDASEEGFMEDRT---HRAFSDDDIAKIAGTYHEW 431


>gi|328952628|ref|YP_004369962.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452952|gb|AEB08781.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 522

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 208/548 (37%), Gaps = 63/548 (11%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L +++W+ A  + G      F   ILPF  L+RL    +     V      FG   I   
Sbjct: 10  LESWLWEAACQIRGPLDAPKFKDYILPFIFLKRLSDVFD---DEVEHLAHDFGDRKIAAT 66

Query: 71  SFVKVAGY-SFYNTSEYSLSTL--GSTNTRNNLESYIAS---FSDNAKAIFEDFDFSSTI 124
              +      FY         +   +T     L   + +    +     + +  DF++T 
Sbjct: 67  LVDQDHKLVRFYMPKAARWPHIATITTGLGQALTDAVRAVARENPKLSGVIDITDFNATA 126

Query: 125 --ARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              R+     L  + +  +        + V   ++   YE+L+R+F     + A +F TP
Sbjct: 127 AGQRIVDDSRLAALVQVLNNPNYRLGLEDVEPDILGRAYEYLLRKFAEGQGQSAGEFYTP 186

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   +L           P    T+ DP CG+GG L      + +         + 
Sbjct: 187 LEVGIVMARIL----------EPQPGMTVCDPCCGSGGLLIKCHLRLLETKGEKHNGRLK 236

Query: 241 --------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
                     +GQE+   T A+      I  +E+D        I  G T+ +  FT    
Sbjct: 237 LPPAIAPLQLYGQEINSVTFAMARMNAFIHDMEAD--------IALGDTMHRPAFTEGDG 288

Query: 290 --KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             + F    +NP + +K+          ++N    RFG G+P  S     ++ H+   L 
Sbjct: 289 RLRHFALVTANPMWNQKFGA------ATYENDTYERFGRGVPPSSSADWGWVQHMTAILS 342

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                 GR A+VL +  +  G   +G   E +IR+  +E D IEA++ LP +LF+ T   
Sbjct: 343 DS----GRMAVVLDTGAVSRGSGNTGSNKERDIRKKFVEEDRIEAVLLLPENLFYNTTAP 398

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             + +L+ RK     G++ LINA+ L+      G+ +  + +    QI  +Y   +  + 
Sbjct: 399 GIVMVLNCRK--RHPGEILLINASKLFAK----GRPKNYLEEAHLEQIAQVYQDWQAKES 452

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              +  +    R    L P R      ++ +  L+  +     +   ++     L  +++
Sbjct: 453 LATVITKAEAARNDYNLSPSRYVSTGVESEVLPLDEAVVLLAEAEEERAEADRQLDEILK 512

Query: 525 QIYPYGWA 532
           ++   GW 
Sbjct: 513 KLGFIGWR 520


>gi|270157704|ref|ZP_06186361.1| putative type I restriction-modification system M subunit
           [Legionella longbeachae D-4968]
 gi|269989729|gb|EEZ95983.1| putative type I restriction-modification system M subunit
           [Legionella longbeachae D-4968]
          Length = 531

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 106/575 (18%), Positives = 205/575 (35%), Gaps = 84/575 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE      SL   +W  A  L        +  V+L    L+ +  + E  R  ++  + 
Sbjct: 1   MTENQF-LKSLEVKLWAAANKLLPSLDAAVYKHVVLGMIFLKYVSDSFETRREELKSAFA 59

Query: 61  A-----FGGSNIDLESFVKV--------AGYSFYNTSEYSLSTLGSTNTR---------- 97
                 + G +I+ +   +             F+       + L   N R          
Sbjct: 60  NPKNDYYLGEDIEEDILKEELENRDYYTEKNVFWVPRAARWNYL-QDNIRLSLGAPLPLG 118

Query: 98  ----------NNLESYIASFSDNAKAIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELH 146
                     ++  + I + +   K I +  DFS   I        L  +    + I  H
Sbjct: 119 GEFKGAGKLIDDAMALIEAENPKLKKILKK-DFSQLQIEH----DKLANLLDLIATIPFH 173

Query: 147 PDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            D +    ++ ++YE+ + +F +   +    F TP+ +V+L   ++              
Sbjct: 174 YDGMKSKDILGHVYEYFLGQFAAAEGKKGGQFYTPKSIVNLIVEMV-----------EPF 222

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF   +   + +          +  +GQE  P T  +    M IR ++
Sbjct: 223 KGRVYDPAMGSGGFFISSEKFIEEH---QGRLGDISVYGQESNPTTWRLAAMNMAIRGID 279

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            +  ++ +       T +KD     R  + L+NPPF  K          +       R+ 
Sbjct: 280 FNFGKEPA------DTFTKDQHPDLRADFVLANPPFNMKEW-------WDGSLDGDSRWK 326

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P  ++ +  ++ H+ +         G   +VL++  L +    SGE E+R  +++ D
Sbjct: 327 YGQPAENNANFAWMQHMLHHTSP----NGVVGLVLANGSLSSN--TSGEKEVRESIIKAD 380

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+EAIVALP+ LF  T I   +WIL+  K ++   K   I+A      I     K+R   
Sbjct: 381 LVEAIVALPSQLFSNTTIPACIWILNKNKAQKE--KTLFIDARQFGYMIDR---KQRAFT 435

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504
           D+   +I  ++ +    +     +     Y         +  +IL        ++ +   
Sbjct: 436 DNDIHEIAKVFRNWRKDEN---YENVAGKYYEATTEDIAKHEYILTPGRYVGAVDVEDDG 492

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
              +   Q     + +   +           ++E 
Sbjct: 493 VSFAEKMQELTNSLSEQFAESSKLEKQIRKNLEEL 527


>gi|329113898|ref|ZP_08242666.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
 gi|326696764|gb|EGE48437.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
          Length = 537

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 108/545 (19%), Positives = 194/545 (35%), Gaps = 67/545 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L  + + +D+  V L    LR +  A E   + +              +    +A 
Sbjct: 41  AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM-----LEDPEAAEDPDEYLAE 95

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129
             F+       S L       N+          I   +    K +         +  +  
Sbjct: 96  NIFWVPETARWSHLKDNARSANIGKMIDEAMLAIEKANPEQLKGVLPKDYGRPALDTV-- 153

Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
             +L ++    S I +   D     V+  +YE+ +  F     +   +F TP  VV    
Sbjct: 154 --MLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 211

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++L                 +YDP CG+GG    +   V   G        +  +GQE  
Sbjct: 212 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 257

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306
             T  +    + +R + +D        I+  +  +  +D     RF Y L+NPPF     
Sbjct: 258 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 307

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                        E  R+  G P   + +  +L H+   L       G A +VL++  + 
Sbjct: 308 -----DWWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSMS 358

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
           +    + E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K      +RRG++
Sbjct: 359 SN--QNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKNPKGWRDRRGEI 416

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481
             I+A  L   +      RR + D+   +I D Y +    K +   +    G+ +   + 
Sbjct: 417 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKNAGKYEDIP-GFCKSATLD 472

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
              +  F+L        E      + S      +  + K + +Q        + +  S+K
Sbjct: 473 EVEQHGFVLTPGRYVGAEEA---EEDSVPFTERFAALEKTLKEQFAQGDALNAKITASLK 529

Query: 542 SNEAK 546
               K
Sbjct: 530 LIVQK 534


>gi|218247023|ref|YP_002372394.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218167501|gb|ACK66238.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 522

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/544 (22%), Positives = 214/544 (39%), Gaps = 53/544 (9%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------RSAVR 56
             + S  SL ++IW  A  + G  +   +   ILP    +RL    +        +   R
Sbjct: 11  NNSNSDKSLESWIWDAACSIRGAQEAAKYKDFILPLIFTKRLCDVFDDELNRIAVKVKTR 70

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKA 113
           EK       + +L  F         + + +S+    S      L  Y   IA  +   K 
Sbjct: 71  EKAFKLVEMDQNLVRFYLPLKPDNPDDAVWSVIRQLSDKIGETLTGYLRDIAKANPLLKG 130

Query: 114 IFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I +  DF++TI   R      L  + +  S   L    V   ++   YE+LIR+F     
Sbjct: 131 IIDRVDFNATIHGERELDDDRLSNLIEKISEKRLGLKDVEPDIIGRSYEYLIRKFAE-SG 189

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP++V  +   ++           P     +YDP CG+ G L      +A+  
Sbjct: 190 KSAGEFYTPKEVGIIMAKIM----------QPQPGMAIYDPCCGSAGLLIKCQLVLAESQ 239

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT--- 288
              +    L  +GQE   +T A+    M+I  +E          I+ G +     F    
Sbjct: 240 EKGEKYAPLQLYGQEYTGDTWAMANMNMIIHDMEG--------KIEIGDSFRFPKFKQGG 291

Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKL 346
              +F   ++NP + + W  ++D    E      GRF  G     S     ++ H+   L
Sbjct: 292 NLAQFDRVVANPMWNQNWFTEQDYDGDEW-----GRFPQGAGFPGSKADWGWVQHIWASL 346

Query: 347 ELPPNGGGRAAIVLSSSPLFNG---RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +L     G++AIVL +     G        E E+R+W +E D+IE ++ LP +LF+ T+ 
Sbjct: 347 QLH----GQSAIVLDTGAASRGSGNANKDKEKEVRKWFVEKDIIEGVIYLPENLFYNTSA 402

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + IL+  K+E R+ ++ LINA+  +      G  +  I+D    +I+  +++ E   
Sbjct: 403 PGIILILNKAKSEARKHQLLLINASLEFAK----GDPKNYISDQGINRIVTAFLNWEEQD 458

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           KFSR++           +  P R   + +      +   +   +           +L  +
Sbjct: 459 KFSRIVSLEEIAKNDYNI-SPSRYIHVTEAEEFRPIGEILQELEELESQAEETNRVLMQV 517

Query: 523 MQQI 526
           + + 
Sbjct: 518 LSKF 521


>gi|189499313|ref|YP_001958783.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189494754|gb|ACE03302.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 547

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 123/576 (21%), Positives = 222/576 (38%), Gaps = 81/576 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M    G+  SL ++IW  A  + G      + + ILP    +RL    +   + +  +  
Sbjct: 1   MANNNGNGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRLCDVFDDELNRIAAEVG 60

Query: 61  AFGGSNIDLESFVKVAGY-----SFYNTSE-YSLSTLGSTNTRNNLES---YIASFSDNA 111
           +   +   + +  K+  +      F      +S+    S      + +    IA  +   
Sbjct: 61  SRKKAFQLVRADHKLVRFYLPLVPFDPEEPVWSVIRKFSDRIGEGVTTHMRAIARENPLL 120

Query: 112 KAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           + I +  DF++T    R      L  + +  S   L  D V   ++   YE+LIR+F   
Sbjct: 121 QGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKCLGLDDVEADIIGKSYEYLIRKFAEG 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  + + +L          +P     +YDP CG+GG L      + +
Sbjct: 181 GGQSAGEFYTPPEVGTIMSRVL----------APEPGMDIYDPCCGSGGLLVKCEIAMEE 230

Query: 230 CGSHHKIPPIL---------------------------VPHGQELEPETHAVCVAGMLIR 262
                K                                  +GQE   +T A+    M+I 
Sbjct: 231 KRREIKEGGHSCPPLHSELNGYPSCNGGLENPPSIAPLKLYGQEYIADTWAMANMNMIIH 290

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +E          I+ G T     F  K+     F   ++NP + + W       E ++ 
Sbjct: 291 DMEG--------QIEIGDTFKNPKFRNKQGKLRTFDRVVANPMWNQDW-----FTEADYD 337

Query: 318 NGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG-- 373
           N EL RF  G G P  S     ++ H+   L       GRAAIVL +  +  G   +G  
Sbjct: 338 NDELDRFPAGAGFPGKSSADWGWIQHIHASLNNS----GRAAIVLDTGAVSRGSGNAGTN 393

Query: 374 -ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  +R+W ++ND+IE+++ LP +LF+ T     +  L+  K  ER G V L+NA+ ++ 
Sbjct: 394 KEKSVRKWFVDNDIIESVLYLPENLFYNTTAPGIVLFLNRDKEIEREGCVLLVNASRIFE 453

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILD 491
                G  +  I D+  ++I+D  +  +  +  SR+++          +  P R     +
Sbjct: 454 K----GDPKNFIPDEGIKRIVDTLIGWKEEEKLSRIVNLAELKKNDYNI-SPSRYIHTGE 508

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 +E  +       L      + L+ +++Q+ 
Sbjct: 509 AETYRPIEDIVKDLNAIELEARETDEALRKILKQLG 544


>gi|256023433|ref|ZP_05437298.1| predicted type I restriction-modification enzyme, M subunit
           [Escherichia sp. 4_1_40B]
 gi|315618356|gb|EFU98944.1| type I restriction-modification system, M subunit [Escherichia coli
           3431]
          Length = 812

 Score =  308 bits (790), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 189/483 (39%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120
                    V   G SF       +  L +     + +   I   ++    K + ++ DF
Sbjct: 45  YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIHKLAEENGLKGVIDEADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G+ L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMIDRLSKLVGIFEGLNLSSNRAEGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T+YDPTCG+G  L            + +
Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLL---------LKVNDE 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               L   GQE++  T A+    M++         + +  I QG+TLS   +       K
Sbjct: 204 ARRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K   +        K     RFG G+P   +G   FL+H+   L+   
Sbjct: 257 AFDFAVANPPFSNKNWTNGLTP----KKDPFERFGWGIPPEKNGDYAFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  L++   I+ ++ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGVIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469
                  R+G + +I+A+  +     +G K R +      +I+D++   R    +SRM+ 
Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTVPGYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 SSE 423


>gi|282865862|ref|ZP_06274911.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282559186|gb|EFB64739.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 886

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/502 (20%), Positives = 184/502 (36%), Gaps = 70/502 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-AFGGS 65
           + A L   ++  A+ L G    +++   I     L+R     E  R  ++E+    +G  
Sbjct: 5   TLAQLERHLFAAADILRGTMDASEYKDYIFGLLFLKRANDEFEAARERIKEQAKRDWGFD 64

Query: 66  NIDLESFVKV-----AGYSFYNTSEYSLSTL--GSTNTRNNL----ESYIASFSDNAKAI 114
             +L++F++           +   +     +   + N   ++       +   ++    +
Sbjct: 65  GEELDAFLEQEAPYRERDVLFVPEKARWHEISGVTRNINESVLRPALQLLEGQNEKLTGL 124

Query: 115 FEDFDFSST-------IARLEKAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRF 166
           F+  DF+                  L  +  +F  + L  D       +   YE+LI+ F
Sbjct: 125 FDHLDFNRIGGSGAAAGTATLADKRLELLIAHFGRVRLRTDDFEFPDLIGAAYEYLIKEF 184

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                    +F TPR VV +   LL          +P     +YDP  G+GG L  A  +
Sbjct: 185 ADSAGRKGGEFYTPRAVVRMMVELL----------APTQGMRIYDPCVGSGGMLIHAAEY 234

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V + G        +   GQ+    +  +    M++  +          ++  G TL++  
Sbjct: 235 VEEHGGD---TSDMFFAGQDANSGSWIMSTMNMVLHGV-------RRFDLTTGDTLARPT 284

Query: 287 F----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK-ISDGSMLFLMH 341
                   RF   LSNPPF   +     A   E       R   GL        ++FL H
Sbjct: 285 HIPTSDADRFDGVLSNPPFSMDYTATDLAHRTE-------RTYYGLTSERGKADLMFLQH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +  + +     GG    V+    LF G    GE +IR  LL+ D +EA++ L  +LF+ T
Sbjct: 338 MLWETKKEGR-GGMVITVMPHGVLFRGG---GEQQIRTKLLDEDAVEAVIGLAPNLFYGT 393

Query: 402 NIATYLWIL---------SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
            I   + +L          + +  ER GKV  INA   + + R     + ++  +   +I
Sbjct: 394 GIPACILVLRPPGCKGRDRSEREPERAGKVLFINADREFHAERA----QNVLLPEHAEKI 449

Query: 453 LDIYVSRENGK-FSRMLDYRTF 473
              + +      FSR++     
Sbjct: 450 TTTFRTFAEVPGFSRVVTREEL 471


>gi|288937351|ref|YP_003441410.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella
           variicola At-22]
 gi|288892060|gb|ADC60378.1| Site-specific DNA-methyltransferase (adenine-specific) [Klebsiella
           variicola At-22]
          Length = 539

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 201/556 (36%), Gaps = 79/556 (14%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E 
Sbjct: 16  EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEV 72

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124
           F +     FY   E   S +     ++++        S I   +   K    D  FS   
Sbjct: 73  FYQQ-DNIFYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               +   L  +      IE             + ++  +YE+ + +F +   +G  +F 
Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ VV L T +L                 +YDP CG+ G    ++  V           
Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+N
Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF             + +  +  RF G   P   + +  +++H+ +KL    +  G A 
Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            VL++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +
Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396

Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------- 460
                   +G+   I+A +L T I    K    +  D    I D Y +            
Sbjct: 397 PAKGYRDRQGETLFIDARNLGTMINRTTK---ELTADDIATIADTYHAWRSTPEELAERV 453

Query: 461 ---NGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
              + K ++  D    G+ ++  +        +L                   +      
Sbjct: 454 KRGDSKLAQYEDQA--GFCKVATIEEIKANENVLTPGRYVGAAEQEDDGVAFEIKMRELS 511

Query: 517 DILKPMMQQIYPYGWA 532
             L   M+Q      A
Sbjct: 512 QTLFAQMKQAQELDNA 527


>gi|253681576|ref|ZP_04862373.1| type I restriction-modification system, M subunit [Clostridium
           botulinum D str. 1873]
 gi|253561288|gb|EES90740.1| type I restriction-modification system, M subunit [Clostridium
           botulinum D str. 1873]
          Length = 538

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/570 (17%), Positives = 219/570 (38%), Gaps = 63/570 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64
            +A  + + +W+ A  L G    +++   ILPF   R L    +   +    E++     
Sbjct: 2   SNAKDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQDEYLKVNGLEEFYEVTD 61

Query: 65  SNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIASFSDNAK------ 112
            +   E   +++    Y     Y+ + +           ++ +    SF+ NAK      
Sbjct: 62  EDEKEEYLEEISKGIGYAIDPAYTWNKIVSKIEDHKIKASDFQDMFDSFNTNAKRNAVAE 121

Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
                +F D +   T    +  E+A  L  I    +      D+    ++ ++YE+LI +
Sbjct: 122 ADFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFNFKDDSG-RDILGDVYEYLIGQ 180

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +   +F TP +V  +   ++            G    +YDPT G+G  L     
Sbjct: 181 FAANAGKKGGEFYTPHEVSQILAKIVTVD-----AHRTGNQFRVYDPTMGSGSLLLTVQK 235

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +     +      +   GQEL   T+ +    +++  +           +++  TL  D
Sbjct: 236 EL----PYGDEEGSVEFFGQELNTTTYNLARMNLMMHGVNYRNME-----LKRADTLDAD 286

Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336
               +        +F   ++NPP+ +KW        K+    +  RF G G+   S    
Sbjct: 287 WPFAEKDGTQIPLKFDAVVANPPYSQKWN------TKDVDREKDIRFKGYGVAPASKADY 340

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L+      G  AIVL    LF       E +IR+ +++N+L++ ++ LP++
Sbjct: 341 AFVLHGLYHLDKA----GTMAIVLPHGVLFRSA---SEGKIRKNIIDNNLLDTVIGLPSN 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+I T + +    +   +   V  I+A++ +      GK +  +  D   +I+D Y
Sbjct: 394 LFYGTSIPTCVLVF-KGREARKNKDVLFIDASNEFEK----GKNQNKLTPDNINKIIDTY 448

Query: 457 VSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +R++ + +S +            +  P  +    ++  +   E      ++    ++ +
Sbjct: 449 HNRQDVEKYSHVASLDEIKENDYNLNIPRYVDTFEEEEVIPLSEVAKELTEVKAEIENSY 508

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             + + + +       A+  + + I     
Sbjct: 509 ESLFRLLNELNGTTDEAKDELSKFINLLTK 538


>gi|91787817|ref|YP_548769.1| N-6 DNA methylase [Polaromonas sp. JS666]
 gi|91697042|gb|ABE43871.1| N-6 DNA methylase [Polaromonas sp. JS666]
          Length = 535

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 170/472 (36%), Gaps = 61/472 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              +   +W  A+ L  +    ++  ++L    ++ +       RS V  +         
Sbjct: 2   LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRSEVATRLADPKDEYF 61

Query: 66  ----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------S 108
                         +     +   F+        +L +   + ++   I          +
Sbjct: 62  FEGATPKTLAVELEDRDYYKSVNVFWVPEAARWESLRAAAKQPDIGKRIDEALTLVEVEN 121

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167
              K I +     + +      G L ++    S +    + +V   ++  +YE+ +  F 
Sbjct: 122 PKLKGILDKRYARAQLPD----GKLGELVDLISTVGFGDNPSVARDILGQVYEYFLGMFA 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP  +V    A+L                 +YDP CG+GG    +   +
Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAVLNPH-----------SGKVYDPCCGSGGMFVQSEKFI 226

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G           +GQE  P T  +    + IR ++ +  R+ +       T  ++  
Sbjct: 227 EAHG---GKLGDASIYGQEANPTTWRLAAMNLAIRGIDFNLGREPA------DTFVRNQH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R  + L+NPPF                     R+  G P   + +  +L H+ + L+
Sbjct: 278 PDLRADFILANPPFNIS-------DWWHASLTGDARWQYGDPPTGNANYAWLQHMLHHLK 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + +    + E +IR  ++E D++E ++ALP  LFF T I   L
Sbjct: 331 PT----GRAGIVLANGSMSSS--QNSEGQIRAAMVEADVVEVMIALPGQLFFNTQIPACL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           W L  +KT   +G+V  I+A  L T I      +    D+   +I +   + 
Sbjct: 385 WFLVKKKTRR-QGEVLFIDARKLATMISRV---QSEFTDEVIARIANTVAAW 432


>gi|257452048|ref|ZP_05617347.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|257466153|ref|ZP_05630464.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917310|ref|ZP_07913550.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|317058596|ref|ZP_07923081.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R]
 gi|313684272|gb|EFS21107.1| N-6 DNA methylase [Fusobacterium sp. 3_1_5R]
 gi|313691185|gb|EFS28020.1| N-6 DNA methylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 502

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/547 (19%), Positives = 208/547 (38%), Gaps = 63/547 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + +         IW  A  LWG     D+ KVI+    LR +  + E     + E+  
Sbjct: 1   MAKKSNVKIGFEKEIWDAACVLWGHIPAADYRKVIVGLIFLRYISSSFEKKYKELLEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +    +    F+   E   ST+ +           +N    I + +   K 
Sbjct: 59  ---GYGFEDDRDAYMEDNIFFVPKEARWSTISAATHTAEIGMVIDNAMRAIEAENKTLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + I +        ++   YE+ I +F +    
Sbjct: 116 VLPKIYASPDLDK----RVLGEVVDLFTNNINMEDTEESKDLLGRTYEYCIAQFAAYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V     +L           P     +YDP CG+GG    ++  +     
Sbjct: 172 KGGEFYTPSSIVKTIVEIL----------KPFDNCRVYDPCCGSGGMFVQSVKFLQAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +   GQE   +T  +    M IR ++++     +       T   DL +  + 
Sbjct: 222 NRNH---ISVFGQESNADTWKMAKMNMAIRGIDANFGPYQA------DTFFNDLHSTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K  +  R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGQD-------KLQDDVRWKYGLPPAGNANYAWIQHMVHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE  IR+ ++E+DLIE IVA+PT LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALST--QTSGEGNIRKAIIEDDLIEGIVAMPTQLFYSVTIPVTLWFISK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------FSR 466
            K  +++GK   I+A ++   +     K R   ++  +++ + +   + G       F  
Sbjct: 380 NK--KQKGKTLFIDARNMGFMVDR---KHRDFTEEDIQKLANTFTHFQEGILEDEKGFCA 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW--LDILKPMMQ 524
           +++      +   +L P R   I D         +   R  S L   F    ++   + +
Sbjct: 435 VVETEEIRKQDY-ILTPGRYVGIADPEDDGEPFEEKMTRLTSELSDMFEKSHELEDEIRK 493

Query: 525 QIYPYGW 531
           ++   G+
Sbjct: 494 KLGAIGY 500


>gi|218281999|ref|ZP_03488311.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989]
 gi|218216986|gb|EEC90524.1| hypothetical protein EUBIFOR_00880 [Eubacterium biforme DSM 3989]
          Length = 521

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/546 (19%), Positives = 199/546 (36%), Gaps = 76/546 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE------- 57
               A L   +W  A DL G    ++F   IL     R L   L        E       
Sbjct: 8   AKQQAELHTQLWAMANDLRGSMDASEFKNYILGLIFYRYLSDKLSNFVDEELEDDDISYA 67

Query: 58  -KYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE-----SYIASFSDN 110
             +         +++ V   G   Y     +  STL         +       +   +++
Sbjct: 68  DAWKDEDFKQDIIDALVDDEGGLGYVIEPANLWSTLIDKINVKQFDISMLAKAVNDLTES 127

Query: 111 AKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
              +    DF +    +            +++ L+ K+      I  H +     V+ + 
Sbjct: 128 TIGLGSQRDFENLFDDMDLNASKLGKSEADRSALIAKVMLKIDDINFHYEDAEIDVLGDA 187

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  L   L+              ++ +YDPTCG+G 
Sbjct: 188 YEYLIGQFAASAGKKAGEFYTPQQVSKLLAKLVTVGK--------SKLKNVYDPTCGSGS 239

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L              K   ++  +GQE    T+ +    ML+  +  +       +I+ 
Sbjct: 240 LLLRV----------AKETDVVSFYGQEKVSTTYNLARMNMLLHGVPFN-----HFDIEN 284

Query: 279 GSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDG 334
             TL          RF   ++NPP+  KW  D   ++ E       RF     L   S  
Sbjct: 285 NDTLEHPNEEHMKMRFDAVVANPPYSAKWSADPKFLDDE-------RFSAYGKLAPKSKA 337

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVAL 393
              F+ H+   L+      G  A+VL    LF G A   E  IR++L+ E + ++A++ L
Sbjct: 338 DYAFVQHMLYLLDDA----GTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGL 390

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+I T + +    KT      +  I+A+  +      GK +  + D   ++I+
Sbjct: 391 PANLFFGTSIPTCVLVFKKCKTH---DDIFFIDASKEFE----SGKNQNRLTDANIQKIM 443

Query: 454 DIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           D Y++R++ + ++              +  P  +    ++  +         ++L     
Sbjct: 444 DTYLARKDVEKYAHCASLEEIAENDYNLNIPRYVDTFEEEEEIDIHAVMKEIKELEAKRD 503

Query: 513 SFWLDI 518
               +I
Sbjct: 504 ELDKEI 509


>gi|326319451|ref|YP_004237123.1| adenine-specific DNA-methyltransferase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376287|gb|ADX48556.1| Site-specific DNA-methyltransferase (adenine-specific) [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 520

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/561 (19%), Positives = 198/561 (35%), Gaps = 81/561 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------- 58
              +   +W  A+ L  +    ++  ++L    L+ +        + +  +         
Sbjct: 2   LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFLKYISDTFTARTAELAARLRDPDDEYF 61

Query: 59  YLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFS 108
           Y      +I     +     +   F+         +      T    +++     I + +
Sbjct: 62  YGDASDEDIAAELEDRDYYTSANVFWVPEAARWEAIRAAAKQTTIGKHIDDALGLIEAEN 121

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167
              K I +     + +      G L ++    S I    D  V   V+  +YE+ +  F 
Sbjct: 122 PKLKGILDKRYARAQLP----GGKLGELVDLVSTIGFGTDPAVARDVLGQVYEYFLGMFA 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP  +V    A+L                 +YDP CG+GG    +   +
Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAVLAPHHG-----------KVYDPCCGSGGMFVQSEKFI 226

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +  +GQE  P T  +    + IR ++ +  R+ +       T + +  
Sbjct: 227 EAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGREPA------DTFTHNQH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R  Y L+NPPF                     R+  G P   + +  +L H+ + L+
Sbjct: 278 PDLRADYILANPPFNIS-------DWWHGSLAGDARWHYGDPPQGNANYAWLQHMLHHLK 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + +    + E  IR  +++ D++E +VALP  LFF T I   L
Sbjct: 331 PT----GRAGIVLANGSMSSS--QNNEGVIRAAMVDADVVEVMVALPGQLFFNTQIPACL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---NGKF 464
           W LS RK  +R+G+V  I+A  L   I      +  ++D    +I +   +         
Sbjct: 385 WFLSQRK--KRKGEVLFIDARKLGKMISRV---QAELDDAAIARIAETVAAWRGEVEAGA 439

Query: 465 SRMLDYRTFGYRRIK----------VLRPLRM----SFILDKTGLARLEADITWRKLSPL 510
           +        G+ R            VL P R     +   D    A     +T +    +
Sbjct: 440 TITTYADVPGFCRSVPLPEIAQHGHVLTPGRYVGAEAVENDDEAFAEKMQKLTEKLGEQM 499

Query: 511 HQSFWLDILKPMMQQIYPYGW 531
            +   LD L  + Q++   G+
Sbjct: 500 AKGAELDAL--IRQKLGGLGY 518


>gi|319778988|ref|YP_004129901.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Taylorella equigenitalis MCE9]
 gi|317109012|gb|ADU91758.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Taylorella equigenitalis MCE9]
          Length = 497

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 100/460 (21%), Positives = 183/460 (39%), Gaps = 54/460 (11%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              +W+ A  LWG     D+ KVI+    L+ +    +     + ++     G   + + 
Sbjct: 7   EKQLWEAACKLWGSIPAADYRKVIIGLIFLKYVSTTFDKRFQQLLDE-----GEGFENDI 61

Query: 72  FVKVAGYSFYNTSEYSLSTL-GSTNTR------NNLESYIASFSDNAKAIFEDFDFSSTI 124
               +   FY   E   + +  +++T       +N    I + + +   +      S  I
Sbjct: 62  DAYTSKNLFYIPEEARWNHISKASHTEKIGVVIDNAMRQIETQNKSLNGVLPKIYASPDI 121

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +     +L  +   F+          +  ++   YE+ I  F S       +F TP  +
Sbjct: 122 DK----HVLSDVVDLFTNSINFESIEQNKDILGRTYEYCIANFASYEGRRGGEFYTPASI 177

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V     +L           P     +YDP  G+GG +  +  ++            +  +
Sbjct: 178 VKTMVEIL----------KPQSGMRIYDPCMGSGGMIVQSAKYIEQH---AGKRFSISVY 224

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE  P+T  +    M IR ++++  +          T   DL   K+F   ++NPPF  
Sbjct: 225 GQESNPDTWKMAKMNMAIRGIDANLGQH------HADTFKNDLHPQKKFDIIMANPPFNL 278

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                ++ VE         R+  G+P  S+ +  ++ H+ + L       G+  +VL++ 
Sbjct: 279 SEWGQENLVE-------DIRWKYGVPPKSNANYAWIQHMIHHLAT----NGKIGLVLANG 327

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L      SGE EIRR ++E+DLIE IVALPT LF+   I   LW ++  K  +++GK  
Sbjct: 328 AL--SSQSSGEGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTL 383

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            I+A ++   +       R   D+    +   +   +NGK
Sbjct: 384 FIDARNIGYMVDRT---HRDFTDEDIDLLAKTFEDFQNGK 420


>gi|300727763|ref|ZP_07061147.1| type I restriction-modification system, M subunit [Prevotella
           bryantii B14]
 gi|299774973|gb|EFI71581.1| type I restriction-modification system, M subunit [Prevotella
           bryantii B14]
          Length = 511

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/534 (20%), Positives = 196/534 (36%), Gaps = 67/534 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L NF+++    + G     +F   I P    +R+    +    A  E+      S  D
Sbjct: 28  QNLYNFLFEACNIIRGPVSQDNFKDYITPILYYKRISDVYDEETEAALEE------SGGD 81

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--------DNAKAIFEDFDF 120
           +E       + F          +   +   NL + I            D    +   F  
Sbjct: 82  MEYATLPEQHRFVIPDGCHWKDVRERS--ENLGAAIVGAMRGIELANPDTLYGVLSMFSA 139

Query: 121 SSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                +   +   +  + ++ S  +L  +  P  +M + YE L+++F  +    A +F T
Sbjct: 140 QKWTDKKNLSDGKIRDLIEHLSTRKLGNNDYPTDLMGDAYEILLKKFADDSKAKAGEFYT 199

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   +L           P    ++YDP CG+GG L +A++H+     +H     
Sbjct: 200 PRSVVQLLVRIL----------DPQPGESVYDPACGSGGMLIEAVHHM-----NHSNLCC 244

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYC 295
               GQE      A+    + +             NI QG TL            +F   
Sbjct: 245 GNIFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRNPKILQGGEVAKFDCV 297

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K          E  + + GR   G P  S G   ++ H+   +     G GR
Sbjct: 298 IANPPFSLK-----KWGSVEWSSDKYGRNIWGTPSDSCGDYAWIQHMIASMAP---GKGR 349

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+V+    LF G     E  IR  L+++D++EA+V L   LF+ T ++    I+   K 
Sbjct: 350 MAVVMPQGVLFRG---KEEGHIREKLVKSDMVEAVVTLGDKLFYGTGLSPCFLIIRKMKP 406

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML---DYR 471
                ++ +I+ T + T  R     + I+      ++ ++YV+ EN + FS+++   D  
Sbjct: 407 AAHSARILMIDGTKILTPKRA----QNILEQKDVDRLFELYVNYENVEDFSQVVTLDDIA 462

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             GY                +  +      +   K +           + ++  
Sbjct: 463 AKGYDLSP-----NKYVQYHREAIKPYTEVLAEFKAAYEEVKLREAEFRKIINA 511


>gi|258654735|ref|YP_003203891.1| type I restriction-modification system, M subunit [Nakamurella
           multipartita DSM 44233]
 gi|258557960|gb|ACV80902.1| type I restriction-modification system, M subunit [Nakamurella
           multipartita DSM 44233]
          Length = 810

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 107/476 (22%), Positives = 187/476 (39%), Gaps = 74/476 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L   +WK+ ++L G    + +   IL    ++ +                        
Sbjct: 6   SDLYGSLWKSCDELRGGMDASQYKDYILTLLFVKYVSD----------------KAKTDP 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTIAR 126
                   G SF    +  L+  G     + L   IA  ++    + + +  DF+    +
Sbjct: 50  NTLIDVPRGGSF----DDMLAAKGDKEIGDRLNKIIAKLAEANGLRNVIDQADFNDE-EK 104

Query: 127 LEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           L K       L K+   F+ ++        D ++ + YE+L+R F +E  +    F TP 
Sbjct: 105 LGKGKEMQDRLSKLVTIFNDLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFYTPA 164

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  +   ++               +T+YDPTCG+G  L  A           + P  + 
Sbjct: 165 EVSRILAKVV------GINSRTRQDKTVYDPTCGSGSLLLKAA---------SEAPRGMT 209

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
            +GQE +  T A+    M++   E         +I +G T++   F      + F + + 
Sbjct: 210 IYGQEKDNATWALSKMNMILHGNEI-------ADIAKGDTITNPQFVSGNHLRTFDFVVM 262

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K               + GRF  G P   +G   FL+H    L+      G+AA
Sbjct: 263 NPPFSLKSWS-------NGLENDYGRFEYGRPPEKNGDYAFLLHALKSLKSV----GKAA 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L    LF G A   E+ +R+ LL+   I+ I+ LP +LF+ T I   + IL       
Sbjct: 312 IILPHGVLFRGHA---EATVRQRLLKQGFIKGIIGLPPNLFYGTGIPACIVILDKENAVA 368

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           R G V +I+A+  +     +G K R +      +I+D +  +   + +SRM+    
Sbjct: 369 RTG-VFMIDASKGFM---KDGNKNR-LRSQDIHKIVDTFNKQLEVERYSRMVPLSE 419


>gi|294793176|ref|ZP_06758322.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
 gi|294456121|gb|EFG24485.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
          Length = 503

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 210/548 (38%), Gaps = 63/548 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MAAKNNTDIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELIKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E   +T+ S           +N    I   +   K 
Sbjct: 59  ---GDGFENDRDAYAEENIFFVPEEARWTTIASAAHTPEIGLVIDNAMRAIEKENTTLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + +++        ++   YE+ I +F S    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR ++++     +       T   DL    + 
Sbjct: 222 NRG---TISVYGQESNADTWKMAKMNMAIRGIDANFGPYQA------DTFFNDLHKTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +       K  +  R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGQE-------KLKDDVRWKYGLPPAGNANYAWIQHMIHHL----GS 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE +IR+ ++E DL+E IVALPT LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGAL--SSQTSGEGDIRKNIIEADLVEGIVALPTQLFYSVTIPVTLWFISM 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSR 466
            K  +++GK   I+A ++   +     K R   DD  +++ D + S ++G       F  
Sbjct: 380 NK--KQKGKTLFIDARNMGYMVNR---KHRDFTDDDIQRLADTFSSFQDGTLEDVKGFCA 434

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW--LDILKPMMQ 524
           ++D +    +   +L P R   I           +   R  S L + F    ++   + +
Sbjct: 435 VVDTKKIEEQDY-ILTPGRYVGIEAVEEDNEPFEEKMSRLTSELSEMFIKSRELETEIRE 493

Query: 525 QIYPYGWA 532
           ++   G+ 
Sbjct: 494 KLGAIGYD 501


>gi|269140412|ref|YP_003297113.1| type I restriction-modification system, M subunit [Edwardsiella
           tarda EIB202]
 gi|267986073|gb|ACY85902.1| type I restriction-modification system, M subunit [Edwardsiella
           tarda EIB202]
          Length = 812

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF       +  L +     + +   I   ++  + K + ++ DF
Sbjct: 45  YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMIDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               L   GQE++  T A+    M++         + +  I QG+TLS   +       K
Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKICQGNTLSDPQWKEADGRLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K       +    K     RF  G+P   +G   FL+H+   L+   
Sbjct: 257 AFDFAVANPPFSNKNWTSGLDL----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469
                  R+G + +I+A+  +     +G K R +      +I+D++   R    +SRM+ 
Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTLPGYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 LSD 423


>gi|170761794|ref|YP_001787475.1| type I restriction-modification system, M subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408783|gb|ACA57194.1| type I restriction-modification system, M subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 511

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 195/486 (40%), Gaps = 69/486 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+  +   A+L   +W  A DL G+ +  +F   IL     R L   +E     + ++  
Sbjct: 1   MSVSSEQQANLHARLWDIANDLRGNMEANEFKNYILELIFYRYLSEKVEGRAEDLLKEDN 60

Query: 61  AFGGSNIDLESFVKV------AGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSD 109
                  + E + +       A   ++   +Y  S+L       N      +  I   ++
Sbjct: 61  ISYREAWEDEEYREALQEELLAQIGYFIEPKYLFSSLMKEIETGNFDVEMLQGAINDITE 120

Query: 110 NAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +      + DF      ++            ++ L+ K+  N S I+   D     V+ +
Sbjct: 121 STLGHKSEDDFDHLFDDMDLTSTKLGRDVKSRSNLIAKVMGNISQIDFKHDDAEIDVLGD 180

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ V  +   L+      L        +++YDP CG+G
Sbjct: 181 AYEYLISQFAATAGKKAGEFYTPQQVSKILAKLVTVGKKDL--------KSVYDPACGSG 232

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L              K   +   +GQEL   T+ +    ML+  +  +       +I+
Sbjct: 233 SLLLRVS----------KEANVRYFYGQELTSTTYNLARMNMLLHDISYER-----FDIR 277

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGS 335
              TL        +F   ++NPP+  KW  D   ++ E       RF     L   S   
Sbjct: 278 NDDTLENPEHIDMKFDAVVANPPYSAKWSADNKFLDDE-------RFSAYGKLAPKSKAD 330

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+  +L    N GG  A+VL    LF G A   E  IR++L+ E + ++ I+ LP
Sbjct: 331 YAFVQHMIYQL----NDGGTMAVVLPHGVLFRGAA---EGVIRKYLIKEKNYLDGIIGLP 383

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + +   +K  E    V  I+A+  +      GK + ++ D    +I+ 
Sbjct: 384 PNIFFGTSIPTAILVF--KKCRENSDNVIFIDASREFEK----GKNQNVLRDCDVEKIIS 437

Query: 455 IYVSRE 460
            YV RE
Sbjct: 438 TYVKRE 443


>gi|285959361|gb|ADC39983.1| type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
          Length = 518

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 108/533 (20%), Positives = 203/533 (38%), Gaps = 69/533 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   + + ++       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 66  NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114
             + E + +           F    +   S L         E       I    ++ +  
Sbjct: 69  AWEDEEYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             + DF    A ++            +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNATRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++              ++ +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +   +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G++F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +      GK + ++ D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNLLTDEDVDKIVETYRNRET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
             KFS +            +  P    ++        ++ D+  ++L+ + + 
Sbjct: 448 IDKFSYVATLDEIKDNDYNLNIP---RYVDTFEEEEPIDLDLVQQQLTDIDKE 497


>gi|331671460|ref|ZP_08372258.1| putative type I restriction-modification system, M subunit
           [Escherichia coli TA280]
 gi|331071305|gb|EGI42662.1| putative type I restriction-modification system, M subunit
           [Escherichia coli TA280]
          Length = 539

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/524 (20%), Positives = 188/524 (35%), Gaps = 81/524 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  +  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                +GK   I+A +L T I    K    +  +    I D Y +               
Sbjct: 400 GYRDRQGKTLFIDARNLGTMISRTTK---ELTTEDIATIADTYHA--------------- 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
              R      L        + L + E    + K++ L      D
Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDND 482


>gi|198242593|ref|YP_002218397.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205355247|ref|YP_002229048.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207859652|ref|YP_002246303.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|1679866|emb|CAA68057.1| Sty SBLI [Salmonella enterica]
 gi|197937109|gb|ACH74442.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205275028|emb|CAR40114.1| Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206711455|emb|CAR35839.1| Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626205|gb|EGE32550.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326630410|gb|EGE36753.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 539

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/529 (21%), Positives = 200/529 (37%), Gaps = 81/529 (15%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + +W  A  L G  + +++  V+L    L+ +    E  R  + ++     G  +++E 
Sbjct: 16  EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKQMEDE---GQGDFLEMEV 72

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124
           F +     FY   E   S +     ++++        S I   + + K    D  FS   
Sbjct: 73  FYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPSLKGALPDNYFSRQN 131

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               +   L  +      IE             + ++  +YE+ + +F +   +G  +F 
Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ VV L T +L                 +YDP CG+ G    ++  V           
Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+N
Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF             + +  +  RF G   P   + +  +++H+ +KL    +  G A 
Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            VL++  +      SGE+EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +
Sbjct: 339 FVLANGSM--SSNTSGEAEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396

Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                   +G+   I+A +L T I    K    +  D    I D Y +  +         
Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMINRTTK---ELTADDIATIADTYHAWRSTP------- 446

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
                    V R  R         LA+ E    + K++ + +    D +
Sbjct: 447 ------EELVERVKRGDSQ-----LAQYEDQAGFCKVATIAEIKANDSV 484


>gi|149915111|ref|ZP_01903639.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b]
 gi|149810832|gb|EDM70671.1| N-6 DNA methylase [Roseobacter sp. AzwK-3b]
          Length = 508

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/502 (20%), Positives = 196/502 (39%), Gaps = 61/502 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           +   ++  A+ + G     ++  V L    LR +  A E  R+   E            +
Sbjct: 5   IEKILFSAADKMRGAMDPGEYKHVALGLLFLRYVSAAFEAKRAEFAE-----DDLIDLED 59

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFEDFDFSST 123
                A   F+         L +    +++          I   +   +         + 
Sbjct: 60  PEEYQAESVFWVPEGARWDRLAANAKAHDIGVQVDDAMREIERANPTLQDALPKVYGRAN 119

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + R     ++  + + F+ +ELH  +    ++  IYE+ I  F S   +   +F TP+ V
Sbjct: 120 LDR----SIVTGLIEMFTNLELHGTSADFDLIGRIYEYFIGEFASSEGKRGGEFYTPKSV 175

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V +   +L                 +YDP CGTGGF   +   +            +  +
Sbjct: 176 VSVLVEML-----------EPTSGRVYDPCCGTGGFFVQSEKFIEAHQGRIG---DIAVY 221

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE    T  +    + IR +  D R +         TL ++ F  +RF + L+NPPF  
Sbjct: 222 GQERNHTTFRLARMNLAIRGILGDIRWNQEG------TLKRNAFPDERFDFILANPPFNI 275

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                        +  E  R+  G P + + +  ++ H+ + L    +  G A +V+++ 
Sbjct: 276 S-------DWDSDQLREDHRWKFGTPPVGNANFAWMAHVHHHL----SANGIAGVVMANG 324

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-------- 415
            +      SGE EIR+ +++ D ++AIVALP  LFF T I   LWIL+  K+        
Sbjct: 325 SM--SSMQSGEGEIRKAMVQQDAVDAIVALPGQLFFGTQIPACLWILAKDKSNGQAAGRT 382

Query: 416 -EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             +RR +V  I+A  +   I    +K++ +++D+  +I   Y +   G+          G
Sbjct: 383 LRDRRQEVLFIDARKMGALIPGS-RKQKKLSEDEIGKIAGAYHAWR-GELGDDAYADEPG 440

Query: 475 YRR-IKVLRPLRMSFILDKTGL 495
           + +  ++    + +F+L     
Sbjct: 441 FCKAARIDEIEQHNFVLTPGRY 462


>gi|238755001|ref|ZP_04616349.1| Type I restriction-modification system methyltransferase subunit
           like protein [Yersinia ruckeri ATCC 29473]
 gi|238706705|gb|EEP99074.1| Type I restriction-modification system methyltransferase subunit
           like protein [Yersinia ruckeri ATCC 29473]
          Length = 534

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/518 (19%), Positives = 196/518 (37%), Gaps = 72/518 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  + +       + +D++ F +
Sbjct: 17  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRKQLID---NGQEAFVDMDVFYQ 73

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                F+   E   S + +   ++++        S I   + +      D  FS     +
Sbjct: 74  Q-DNVFFLPPEARWSFVKARAKQDDIAVIIDTALSTIEKRNASLTGALPDNYFSRQGLEV 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++   L    +N   +    D   + ++  +YE+ + +F +   +G  +F TP+ VV L 
Sbjct: 133 KRLASLIDSIENIDTLANESDLTEEDLVGRVYEYFLGKFAASEGKGGGEFYTPKAVVTLL 192

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L                 +YDP CG+GG    ++  +            +  +GQEL
Sbjct: 193 AEML-----------EPYQGKIYDPCCGSGGMFVQSLKFIESHK---GKSRDIAIYGQEL 238

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    + +R L  +         +   T   D     +  + ++NPPF      
Sbjct: 239 TSTTYKLAKMNLAVRGLSGNLGE------RAADTFFADQHPDLKADFIMANPPFNL---- 288

Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                  E +     RF G   P   + +  +++H+ +KL      G   A   + S   
Sbjct: 289 --KDWRNEAELTNDPRFAGFRTPPTGNANYAWILHMLSKLSEDGTAGFVLA---NGSMSS 343

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERR 419
           N    SGE EIR+ L+E+D IE ++ALP  LFF T I   LW +S  K         +RR
Sbjct: 344 N---TSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFISKSKKANPQYGYRDRR 400

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           G+   I+A +L T +      ++ +  +    I D + +  +                  
Sbjct: 401 GETLFIDARNLGTMVSRT---QKELTKEDIATIADTFHAWRSS----------------- 440

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               L+     ++ G+ + +    + K++ L      D
Sbjct: 441 -ESELKRRIESNEIGVEQYQDQAGFCKVATLDDMKAND 477


>gi|320528569|ref|ZP_08029726.1| type I restriction-modification system, M subunit [Solobacterium
           moorei F0204]
 gi|320131155|gb|EFW23728.1| type I restriction-modification system, M subunit [Solobacterium
           moorei F0204]
          Length = 521

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 110/546 (20%), Positives = 199/546 (36%), Gaps = 76/546 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE------- 57
               A L   +W  A DL G    ++F   IL     R L   L        E       
Sbjct: 8   AKQQAELHTQLWAMANDLRGSMDASEFKNYILGLIFYRYLSDKLSNFVDEELEDDDISYA 67

Query: 58  -KYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE-----SYIASFSDN 110
             +         +++ V   G   Y     +  STL         +       +   +++
Sbjct: 68  DAWKDEDFKQDIIDALVDDEGGLGYVIEPANLWSTLIDKINVKQFDISMLAKAVNDLTES 127

Query: 111 AKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
              +    DF +    +            +++ L+ K+      I  H +     V+ + 
Sbjct: 128 TIGLGSQRDFENLFDDMDLNASKLGKSEADRSVLIAKVMLKIDDINFHYEDAEIDVLGDA 187

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  L   L+              ++ +YDPTCG+G 
Sbjct: 188 YEYLIGQFAASAGKKAGEFYTPQQVSKLLAKLVTVGK--------SKLKNVYDPTCGSGS 239

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L              K   ++  +GQE    T+ +    ML+  +  +       +I+ 
Sbjct: 240 LLLRV----------AKETDVVSFYGQEKVSTTYNLARMNMLLHGVPFN-----HFDIEN 284

Query: 279 GSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDG 334
             TL          RF   ++NPP+  KW  D   ++ E       RF     L   S  
Sbjct: 285 NDTLEHPNEEHMKMRFDAVVANPPYSAKWSADPKFLDDE-------RFSAYGKLAPKSKA 337

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVAL 393
              F+ H+   L+      G  A+VL    LF G A   E  IR++L+ E + ++A++ L
Sbjct: 338 DYAFIQHMLYLLDDA----GTMAVVLPHGVLFRGAA---EGIIRQYLIKEKNWLDAVIGL 390

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LFF T+I T + +    KT      V  I+A+  +      GK +  + D   ++I+
Sbjct: 391 PANLFFGTSIPTCVLVFKKCKTH---DDVFFIDASKEFE----SGKNQNRLTDANIQKIM 443

Query: 454 DIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           D Y++R++ + ++              +  P  +    ++  +         ++L     
Sbjct: 444 DTYLARKDVEKYAHCASLEEIDENDYNLNIPRYVDTFEEEEEIDIHAVMKEIKELEAKRD 503

Query: 513 SFWLDI 518
               +I
Sbjct: 504 ELDKEI 509


>gi|268323495|emb|CBH37083.1| putative type I restriction-modification system DNA methylase (M
           protein) [uncultured archaeon]
          Length = 517

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 181/558 (32%), Gaps = 56/558 (10%)

Query: 1   MTEFTGSAAS--LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +         L   +WK A+ L  +    ++  + L    L+ +  A E       +K
Sbjct: 1   MAKNEIKTEEEPLEKQLWKAADKLRKNIDAAEYKHIALGLIFLKYISDAFEGLYHK-LQK 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                      +     A   F+       S L +   +  +          I   +   
Sbjct: 60  GEGDYAGADPEDRDEYKAENVFFVPEIARWSYLQARAKQPEIGKDVDFAMDAIEKENPLL 119

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +         +        L  +      I L         ++ +++E+ +  F    
Sbjct: 120 KGVLPKVYARGNL----DPTSLGGLIDLVGNIALGDAKARSADILGHVFEYFLGEFALAE 175

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TPR VV L   +L                 ++DP CG+GG    +   VA  
Sbjct: 176 GKKGGQFYTPRSVVQLLVEML-----------EPYNGRVFDPCCGSGGMFVHSEKFVAQH 224

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                    +  +GQE    T  +C   + IR  +S   +  ++      +   D     
Sbjct: 225 QGQVN---DISIYGQESNQTTWRLCKMNLAIRSTDSSQVKWNNEG-----SFLNDAHKDL 276

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  Y ++NPPF                  + GR+  G+P   + +  ++ H    L    
Sbjct: 277 KADYVIANPPFNDSDWSGD-------LLRKDGRWNYGVPPTGNANYAWIQHFLYHLSPSG 329

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G     VL+   L +  A  GE EIR+ L+E  LI+ IV LP  LF  T I   LW L
Sbjct: 330 QTG----FVLAKGALTSKTA--GEGEIRKELVEARLIDCIVNLPPKLFLNTQIPASLWFL 383

Query: 411 SNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           S  K       R  ++  I+A ++   I     + R  + ++  +I + Y +  N     
Sbjct: 384 SRNKANGKYRNRTDELLFIDARNMGHLINR---RTREFSKEEIEKIAETYHNWRNPDG-D 439

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             D + F      + R   + ++L       L  D      +        +  + + ++ 
Sbjct: 440 YKDVKGFC-NSASIERVKELDYVLTPGRYVGLPDDEDDFDFNERFSKLKTEFEEQLKEEA 498

Query: 527 YPYGWAESFVKESIKSNE 544
                    +      +E
Sbjct: 499 ELNRKILENLARVSVKDE 516


>gi|307721265|ref|YP_003892405.1| type I restriction-modification system, M subunit [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979358|gb|ADN09393.1| type I restriction-modification system, M subunit [Sulfurimonas
           autotrophica DSM 16294]
          Length = 520

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/547 (19%), Positives = 201/547 (36%), Gaps = 82/547 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E       L   +W  A  L G     +F   IL F   + L   +      + ++  
Sbjct: 1   MSEEQKKL--LEQQLWNIANTLRGKMDADEFRDYILGFIFYKYLSEKINDYADNLLKEDK 58

Query: 61  ---------AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
                    +  G  +             Y      L +  +    ++  ++I    ++ 
Sbjct: 59  ILFCDLDENSEEGKEMLEAIKEDAIESLGYFLKPSELFSAVAKRGNSDTNNFI---LEDL 115

Query: 112 KAIFEDF-----------DFSSTIARLE------------KAGLLYKICKNFSGIELHPD 148
             I  +            DF      L+            K  L+ K+  +   I+    
Sbjct: 116 TGILRNIEQSTMGHESEDDFEHLFEDLDLTSTKLGKTEEAKNKLIAKVLSHLDKIDFELK 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V+ + YE+LI +F S   + A +F TP+ V  +   ++              +++
Sbjct: 176 NHDRDVLGDAYEYLIAQFASGAGKKAGEFYTPQQVSKILAKIV--------TNKKTKLKS 227

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L      V D         +   +GQEL   T+ +    M++  +    
Sbjct: 228 VYDPTCGSGSLLLRVAKEVQD---------VSNFYGQELNRTTYNLARMNMIMHDVH--- 275

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 +I+Q  TL       KRF   ++NPPF   W  +   +  +  +         L
Sbjct: 276 --YRKFDIKQEDTLENPQHRDKRFEAIVANPPFSAHWSANPLFMSDDRFSQY-----GKL 328

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              S     F+ H+  +L    +  G  A+VL    LF G A   E  IRR+L+E+ + +
Sbjct: 329 APKSKADYAFVQHMIYQL----DDNGTMAVVLPHGVLFRGAA---EGHIRRYLIEDRNYL 381

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP ++F+ T+I T + +   +K  E    V  I+A++ +   +N    + ++ D+
Sbjct: 382 DAVIGLPANIFYGTSIPTCILVF--KKCREDSENVLFIDASNEFEKAKN----QNVLTDE 435

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+  +  R    K+S +   +        +  P    ++        ++ +   ++
Sbjct: 436 NIDKIITTFKERSTIDKYSHLATLKEIKENDYNLNIP---RYVDTFEEEEPIDLNAVSQE 492

Query: 507 LSPLHQS 513
           L  L   
Sbjct: 493 LKALENE 499


>gi|238921301|ref|YP_002934816.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri
           93-146]
 gi|238870870|gb|ACR70581.1| type I restriction enzyme M protein (HsdM) [Edwardsiella ictaluri
           93-146]
          Length = 812

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF       +  L +     + +   I   ++  + K + ++ DF
Sbjct: 45  YKGDPYGMIVIPKGASF-----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMMDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGK 290
               L   GQE++  T A+    M++         + +  I QG+TLS   +       K
Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKVANGKLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K       +    K     RF  G+P   +G   FL+H+   L+   
Sbjct: 257 TFDFAVANPPFSNKNWTSGLDL----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469
                  R+G + +I+A+  +     +G K R +      +I+D++   R    +SRM+ 
Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTLPGYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 LSD 423


>gi|156932818|ref|YP_001436734.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531072|gb|ABU75898.1| hypothetical protein ESA_00614 [Cronobacter sakazakii ATCC BAA-894]
          Length = 569

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 106/608 (17%), Positives = 190/608 (31%), Gaps = 114/608 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M          L N  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNAEQQFLNELDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELMTLF 60

Query: 57  --------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95
                               E+Y       +++E +       F+        TL +   
Sbjct: 61  RDVGNPDNIYAISRDDYSSDEEYAQALLDELEVEDYY-TEKNVFWVPKAARWETLKNKAM 119

Query: 96  ------------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG 131
                                     +N    I   +   K I                 
Sbjct: 120 LPTGTVLWVDETTGQDVKLRSVSWLVDNALDEIEKTNPKLKGILNRISQYQLG-----NE 174

Query: 132 LLYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +L  +   FS                    ++ ++YE+ + +F     +    + TP+ +
Sbjct: 175 VLTGLINTFSDANFSNPEYNGEKLSLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSI 234

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPP 238
           V L   +L                 +YDP  G+GGF   +   + +          +   
Sbjct: 235 VTLIVEML-----------QPYNGRVYDPAMGSGGFFVSSDRFIEEHAGEKHYNAAEQKQ 283

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQE  P T  +    M IR ++ +         +   TL  D     R  + ++N
Sbjct: 284 KISVYGQESNPTTWRLAAMNMAIRGIDFNFGT------KNADTLLDDQHPDLRADFVMAN 337

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  K            K     R+  G P   + +  ++ H+ + L      G  A +
Sbjct: 338 PPFNMKEW-------WSAKLENDVRWKYGTPPQGNANFAWMQHMIHHLAPK---GSMALL 387

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT--- 415
           + + S   N      E EIRR L+E DL+E +VALP  LF  T I   +W L+  KT   
Sbjct: 388 LANGSMSSNTNN---EGEIRRNLIEADLVECMVALPGQLFTNTQIPACIWFLTKDKTGGN 444

Query: 416 --EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
               R+G+V  I+A  + +   R      R    +   +I D +   +  K     D   
Sbjct: 445 GKAHRKGEVLFIDARKIGFMKDRVL----RDFTREDIAKIADTFHKWQADK--DYEDEAG 498

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           F +    +    +  F+L               +           +   +  Q+      
Sbjct: 499 FCFSA-TLEDIQKNDFVLTPGRYVGAAEQ---EEDDEPFAEKMARLTAQLKDQLEESAKL 554

Query: 533 ESFVKESI 540
           E+ +K ++
Sbjct: 555 EAQIKANL 562


>gi|229165871|ref|ZP_04293637.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH621]
 gi|228617576|gb|EEK74635.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH621]
          Length = 538

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/496 (19%), Positives = 198/496 (39%), Gaps = 62/496 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64
            +A  + + +W+ A  L G    +++   ILPF   R L    +   +    E++     
Sbjct: 2   SNATDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQDEYLKVNDLEEFYEVTD 61

Query: 65  SNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIASFSDNAK------ 112
                +   +++    Y     Y+   + S         ++ +    SF+ NAK      
Sbjct: 62  DTEKEDYLEEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSFNTNAKRNAIAE 121

Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
                +F D +   T    +  E+A  L  I    +      D+    ++ ++YE+LI +
Sbjct: 122 ADFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFTFKDDSG-HDILGDVYEYLIGQ 180

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +   +F TP +V  +   ++            G    +YDPT G+G  L    N
Sbjct: 181 FAANAGKKGGEFYTPHEVSQVLAKIVTID-----AAGTGDQFRVYDPTMGSGSLLLTVQN 235

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +     +      +  +GQEL   T+ +    +++  +           +++  TL  D
Sbjct: 236 EL----PNGDEEGSVEFYGQELNTTTYNLARMNLMMHGVNYRNME-----LKRADTLDAD 286

Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336
               +        +F   ++NPP+ +KW  D   V++E    +  RF G G+   S    
Sbjct: 287 WPFAEKDGTQIPLKFDAVVANPPYSQKW--DTKDVDRE----KDTRFKGYGVAPASKADY 340

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L+      G  AIVL    LF G     E  IR+ +++N+L++ ++ LP +
Sbjct: 341 AFILHGLYHLDKA----GTMAIVLPHGVLFRGA---SEGRIRKNIIDNNLLDTVIGLPAN 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T I T + +    +   +   +  I+A++ +      GK +  ++ +   +I++ Y
Sbjct: 394 LFYGTGIPTCVLVF-KGREARKNKDILFIDASNEFEK----GKNQNKLSAENINKIIETY 448

Query: 457 VSRENGKFSRMLDYRT 472
             RE+ +    +    
Sbjct: 449 SIREDVEKYAHVASLD 464


>gi|119632845|gb|ABL84420.1| type I DNA methylase [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 539

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 202/556 (36%), Gaps = 79/556 (14%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + +W  A  L G  + +++  V+L    L+ +    E  R  ++++     G  +++E 
Sbjct: 16  EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMKDE---GQGDFLEMEV 72

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124
           F +     FY   E   S +     ++++        S I   +   K    D  FS   
Sbjct: 73  FYQQ-DNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               +   L  +      IE             + ++  +YE+ + +F +   +G  +F 
Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ VV L T +L                 +YDP CG+ G    ++  V           
Sbjct: 189 TPKCVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+N
Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF             + +  +  RF G   P   + +  +++H+ +KL    +  G A 
Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            VL++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +
Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396

Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE---------- 460
                   +G+   I+A +L T I    K    +  D    I D Y +            
Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMINRTTK---ELTADDIVTIADTYHAWRSTPEELAERV 453

Query: 461 ---NGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
              + K ++  D    G+ ++  +       ++L                   +      
Sbjct: 454 KRGDSKLAQYEDRA--GFCKVATIAEIKANDYVLTPGRYVGAAEQEDDGVAFEIKMRELS 511

Query: 517 DILKPMMQQIYPYGWA 532
             L   M+Q      A
Sbjct: 512 QTLFAQMKQAEELDKA 527


>gi|320526800|ref|ZP_08027990.1| putative type I restriction-modification system, M subunit
           [Solobacterium moorei F0204]
 gi|320132768|gb|EFW25308.1| putative type I restriction-modification system, M subunit
           [Solobacterium moorei F0204]
          Length = 510

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 109/545 (20%), Positives = 196/545 (35%), Gaps = 68/545 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MVSKNNTNIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFERRYDELLKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         FY   E   S + S           +N    I   + + K 
Sbjct: 59  ---GEGFENDRDAYAEENIFYVPEEARWSKIASAAHTPEIGAVIDNAMRSIEKENTSLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + I++    +   ++   YE+ I +F +    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEIKMDGTELSKDLLGRTYEYCIAQFAAYEGA 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    A+L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSD 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +  I   +  +GQE   +T  +    M IR ++++             T   D+    + 
Sbjct: 222 NRGI---ISVYGQESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKS 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF               K     R+  G+P   + +  ++ H+   L      
Sbjct: 273 DFIMANPPFNLSNWGAD-------KLKVDPRWKYGVPPSGNANYAWIQHMIYHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE EIR+ ++E+DLIE IVALPT LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGAL--SSQSSGEGEIRKKIIEDDLIEGIVALPTQLFYSVTIPVTLWFISR 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKF 464
            K  +++GK   I+A  +   +     K R   +             +   +   +NG  
Sbjct: 380 NK--KQKGKTLFIDARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNG-- 432

Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
              +     G+  I  +    +  +IL       +E      +      +     L  M 
Sbjct: 433 ---VLKEKKGFSAIATIEDIAKQDYILTPGRYVGIEEQKDDGEPFGEKMTRLTSELSGMF 489

Query: 524 QQIYP 528
           ++ + 
Sbjct: 490 EKSHE 494


>gi|306815459|ref|ZP_07449608.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Escherichia coli NC101]
 gi|305851121|gb|EFM51576.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) protein [Escherichia coli NC101]
          Length = 539

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 115/574 (20%), Positives = 204/574 (35%), Gaps = 84/574 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  +  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                +G+   I+A +L T I    K    +  +    I D Y +               
Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTTEDIATIADTYHA--------------- 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
              R      L        + L + E    + K++ L      D +    + +      E
Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQEE 498

Query: 534 S-FVKESIKSNEAKTL--KVKASKSFIVAFINAF 564
                E+     +KTL  ++K ++    A     
Sbjct: 499 DGVAFETKMRELSKTLFEQMKQAEELDRAIRKNL 532


>gi|240171167|ref|ZP_04749826.1| putative type I restriction/modification system DNA methylase
           [Mycobacterium kansasii ATCC 12478]
          Length = 520

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 106/559 (18%), Positives = 205/559 (36%), Gaps = 75/559 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK+A+ L G    + +  VIL    L+ L  A    R A+     A G  
Sbjct: 10  STLKELQDTLWKSADKLRGSIGASQYKDVILGLLFLKYLSDADTEQRIAIGATLSAGG-- 67

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-----YIASFSDNAKAIFEDFD- 119
                        +F          L +     ++ +      I +  D+A       + 
Sbjct: 68  ---------TDRGAFTVPPNARWELLAAHAEGKSVVAGEPAKSIGALIDDAMDAVMQANP 118

Query: 120 -FSSTIARLEKAG-----LLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVS 171
             + ++ R+          L ++   FS        +     +M  +YE+ +  F     
Sbjct: 119 ALAVSLPRMYNRDNIDQRRLGELVGLFSTARFSRQGEHRARDLMGEVYEYFVGNFARAEG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  VV +   +L                 +YDP CG+GG    A     +  
Sbjct: 179 KRGGEFFTPASVVKVIVEVL-----------EPSRGRVYDPCCGSGGMFVQAEKFAYEHS 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE   ET  +    + +  ++       +K ++ G T   D   G R
Sbjct: 228 GDVN---DICIYGQESVEETWRMAKMNLAVHGID-------NKGLRWGDTFVCDQHAGVR 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF          ++   ++ +  R+  G+P  ++ +  ++ H+ +KL     
Sbjct: 278 MDYVMANPPFN---------IKDWARDEKDPRWRFGVPPANNANYAWIQHILSKLAP--- 325

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRA +V+++  +      +GE  IR  +++ DL+  +VALP  LF  T I   LW  +
Sbjct: 326 -GGRAGVVMANGSM--SSNSNGEGIIRAHIVDADLVSCMVALPAQLFRSTGIPVCLWFFA 382

Query: 412 NRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF- 464
             K        +R G+V  I+A +    +       R +  ++   I D Y +    +  
Sbjct: 383 MDKKAGCQGAIDRSGQVLFIDAREFGHLVDRTE---RALAAEEITLIGDTYHAWRGTRSA 439

Query: 465 -SRMLDYRTF-GYRRIKVLRPLR-MSFILDKTG-LARLEADITWRKLSPLHQSFWLDILK 520
            S+ + Y+   G+ +  +L  +R  ++ L     +   E +     +         D+L 
Sbjct: 440 GSKSIAYQDVCGFCKSVMLAEIRAANYALTPGRYVDAPETECDGEPIGGDITRLTEDLLT 499

Query: 521 PMMQQIYPYGWAESFVKES 539
            + +           +K  
Sbjct: 500 ALDESARLETVLRKQLKRL 518


>gi|154492485|ref|ZP_02032111.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC
           43184]
 gi|254881870|ref|ZP_05254580.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|154087710|gb|EDN86755.1| hypothetical protein PARMER_02119 [Parabacteroides merdae ATCC
           43184]
 gi|254834663|gb|EET14972.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 513

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 88/542 (16%), Positives = 187/542 (34%), Gaps = 70/542 (12%)

Query: 1   MTEFTGSA----ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +   +      ++   +W +A +L G+    ++  V+L    L+ +    +     + 
Sbjct: 1   MAKKAKTKDVAKKTIEQTLWDSANELRGNLDAAEYKSVVLGLVFLKYINDCFKVKHDELV 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSD 109
            +     G+  + +    +    F+  ++     +   +    +          +   + 
Sbjct: 61  AE-----GAGFEEDPDEYIGDNIFFVPTDARWDKIVKASLTAEIGVVIDTAMEALEQENR 115

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             K+I         + +      L  +   F        T    V+  +YE+ +  F  E
Sbjct: 116 QLKSILPKNYARPELDK----RRLGNVIDIFENNLHFTGTEARDVLGRVYEYFLGEFARE 171

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +F TP  VV     ++                 ++DP CG+GG    +   +  
Sbjct: 172 EGKKGGEFYTPSCVVRTIVEVI-----------QPYKGKIFDPACGSGGMFVQSSKFIER 220

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              +      +  +GQEL   T  +    + I  +E++           G +   D    
Sbjct: 221 HRGNIN---QISVYGQELNSNTWKLAQMNLAICGIEANFGDS------FGDSFHDDKHPF 271

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +  + ++NPPF               +  +  R+  G+P   + +  ++ H+   L   
Sbjct: 272 LKADFVMANPPFNISKWGGD-------QLRDDPRWQYGIPPEGNANFAWMQHMLYHLAD- 323

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR  +VL++  L        E EIR+ ++  DL+E IVA+P+ LF+   I   LW 
Sbjct: 324 ---NGRIGLVLANGSL--SSQQGTEGEIRKNIVNADLVEGIVAMPSQLFYNVQIPCCLWF 378

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGK-----KRRIINDDQRRQILDIYVSRENGKF 464
           L+ +K +   GK   I+A ++        +     +    + +   +I + +     G  
Sbjct: 379 LTKKKAQ--PGKTLFIDARNMGYMKDRTHRELSCGEETEDHGNDIGRIAETFEQFRAG-- 434

Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTG---LARLEAD-ITWRKLSPLHQSFWLDIL 519
                    G+  I  +    +  FIL       +A +E D   +++      S   D+ 
Sbjct: 435 ---TLETEKGFSAIATIEDIEKQDFILTPGRYVGIAEVEDDGEPFQEKMERLTSELSDLF 491

Query: 520 KP 521
             
Sbjct: 492 AQ 493


>gi|42525032|ref|NP_970412.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39577243|emb|CAE81066.1| type I restriction enzyme M protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 585

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 113/493 (22%), Positives = 193/493 (39%), Gaps = 65/493 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---LAFG 63
           +   +   +W   +   G     ++   IL    ++ L    E       +++    +  
Sbjct: 5   TQDEINKILWDACDTFRGVVDAGEYKNYILTMLFIKYLSDTYEEKYEEYEKQFGGNESRI 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-- 121
              ++ E+FV   G  F +                 LE    +  +  + +F +  F+  
Sbjct: 65  KRALEKENFVLPVGCHFKDIYAQKEEKNIGEIIDIALEKIEKANKEKLENVFRNVSFNSE 124

Query: 122 -STIARLEKAGLLYKICKNFSGIELHP---DTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +     ++   L  +  +F+  +L+    +     V+ N YE+LI  F +   + A +F
Sbjct: 125 ANLGKTKDRNARLKHLLDDFNNQKLNMRKSNIGDLDVIGNAYEYLIANFAAGAGKKAGEF 184

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  L   L+          +P     +YDPTCG+G  L      +   G +    
Sbjct: 185 YTPSEVSQLLAKLV----------APQKGNRIYDPTCGSGSLLIRCAEQLTKKGEN---- 230

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----RFH 293
                +GQE+   T A+    M +   +          I+ G T+   L        +F 
Sbjct: 231 -DFQIYGQEITGATWALAKMNMFLHGFDRSV-------IENGDTIRSPLHLEDDTIMKFD 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPF       +    +E KN    RF  G+P  S G + F+ H+   L    N  
Sbjct: 283 IVVANPPFSL-----EKWGIEEAKNDPYDRFSYGIPPQSYGELAFVQHMIASL----NEN 333

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN------DLIEAIVALPTDLFFRTNIATYL 407
           G+AA+VL    LF G   S E +IR  +++       DL+EA++ LPT+LFF T I   +
Sbjct: 334 GKAAVVLPHGVLFRG---SSEQKIREGIIKGTDVLKGDLLEAVIGLPTNLFFGTGIPAAI 390

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-------- 459
            +L+  K  ER+GKV  INA   +      GK +  +       I+  +           
Sbjct: 391 MVLNKNKPVERKGKVLFINADLEFQE----GKNQNKLRVSDIDHIVKNFKEFKTENLYRH 446

Query: 460 ENGKFSRMLDYRT 472
           E   FSR++D R 
Sbjct: 447 EEKHFSRVVDVRD 459


>gi|325121239|gb|ADY80762.1| type I site-specific deoxyribonuclease [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 523

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 103/501 (20%), Positives = 191/501 (38%), Gaps = 75/501 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------- 47
           MT+       L   +W  A  L G     +F   IL     + L                
Sbjct: 1   MTQ--VQLQELQKQLWNIANTLRGKMGADEFRDYILGLIFYKYLSEKVLNSANAELADEG 58

Query: 48  -----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
                L+ +    +E   A    +++   +       F++ +E            ++L  
Sbjct: 59  IEFPDLDASNEEHQEFLEALKQESLENMGYFLEPNQLFHSIAE---RAKKEEFILDDLIK 115

Query: 103 YIASFSDNAKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTV 150
            + S   + +      DF+     L            ++  L+ K+  +   I+      
Sbjct: 116 TLKSIEQSTQDADSADDFAHLFEDLDLTSTKLGNNANDRNELIAKVIIHLDAIDFDISNT 175

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+ + YE+LI  F S   + A +F TP+ V  L   ++    +         +R++Y
Sbjct: 176 ESDVLGDAYEYLIGEFASGAGKKAGEFYTPQMVSTLLARIVTQGKE--------RLRSVY 227

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L      V +         +   +GQE+   T+ +    M++  +      
Sbjct: 228 DPTCGSGSLLLRVKREVGNH--------VDAIYGQEMNRTTYNLARMNMILHDVHF---- 275

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               +I+Q  TL K     K+F   ++NPPF  KW  D   +  E            L  
Sbjct: 276 -SKFDIRQEDTLKKPQHLDKKFDAIVANPPFSAKWSADPLFMNDERFKSY-----GKLAP 329

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389
            S   M F+ H+  +L+      G  A+VL    LF G   S E  IR++++E  ++I+ 
Sbjct: 330 SSKADMAFVQHMLYQLDEH----GTMAVVLPHGVLFRG---SSEGHIRQFMIEQMNVIDT 382

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP ++F+ T+I T + +L  +K  E +  +  I+A++ +   +N    +  +  +  
Sbjct: 383 IIGLPANIFYGTSIPTCILVL--KKNREHKDNILFIDASNEFEKQKN----QNKLLPEHL 436

Query: 450 RQILDIYVSRENGKFSRMLDY 470
             I+  Y +R+N      +  
Sbjct: 437 DNIIGAYENRQNIDKYAYVAT 457


>gi|323965459|gb|EGB60914.1| N-6 DNA methylase [Escherichia coli M863]
 gi|327250266|gb|EGE61985.1| N-6 DNA Methylase family protein [Escherichia coli STEC_7v]
          Length = 539

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 212/562 (37%), Gaps = 78/562 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +  +T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  +  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF--------- 464
                +G+   I+A +L T I    K    +  +    I D Y +  +            
Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTAEDIATIADTYHAWRSTPEELAARIARG 456

Query: 465 -SRMLDYRT-FGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            S++  Y    G+ ++  L+ ++ + ++L               +     ++   ++ K 
Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNGYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513

Query: 522 MMQQIYPYGWAESFVKESIKSN 543
           + +Q+      +  +++++++ 
Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535


>gi|193070116|ref|ZP_03051062.1| type I restriction-modification system, M subunit [Escherichia coli
           E110019]
 gi|218561525|ref|YP_002394438.1| type I restriction-modification system methyltransferase subunit;
           (hsdM-like) [Escherichia coli S88]
 gi|192956569|gb|EDV87026.1| type I restriction-modification system, M subunit [Escherichia coli
           E110019]
 gi|218368294|emb|CAR06112.1| putative type I restriction-modification system methyltransferase
           subunit; (hsdM-like) [Escherichia coli S88]
          Length = 539

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/524 (20%), Positives = 188/524 (35%), Gaps = 81/524 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  +  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                +G+   I+A +L T I    K    +  +    I D Y +               
Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTAEDIATIADTYHA--------------- 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
              R      L        + L + E    + K++ L      D
Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDND 482


>gi|283477075|emb|CAY72970.1| type I restriction-modification system DNA methylase [Erwinia
           pyrifoliae DSM 12163]
          Length = 566

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 100/525 (19%), Positives = 174/525 (33%), Gaps = 97/525 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           M          L +  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLF 60

Query: 56  -------------------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95
                                +Y       +++E +       F+        TL S   
Sbjct: 61  RQVGNADNTYAIPREEYDSEAEYQQAIDQELEVEDYY-AEKNVFWVPKAARWETLKSQAA 119

Query: 96  --TRNNLESYIASFS----------DNAKAIFE--DFDFSSTIARLEK----AGLLYKIC 137
               + L                  DNA    E  +      + R+        +L  + 
Sbjct: 120 LPVGSVLGRDENGKELKLRSVSLLIDNALDKIEQSNGKLKGVLNRIAHYQLGNEVLIGLI 179

Query: 138 KNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             FS                    ++ ++YE+ + +F     +    + TP+ +V L   
Sbjct: 180 NTFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVE 239

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPILVPHG 244
           +L                 +YDP  G+GGF   +   +            +    +V +G
Sbjct: 240 MLQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYG 288

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE  P T  +    M IR ++ D         +   TL  D     R  + ++NPPF  K
Sbjct: 289 QESNPTTWRLAAMNMAIRGIDFDFGT------KNADTLLDDQHPDLRADFVMANPPFNMK 342

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       K     R+  G P   + +  ++ H+ + L      G  A ++ + S 
Sbjct: 343 EW-------WSAKLENDVRWQYGTPPQGNANFAWMQHMIHHLAPQ---GSMALLLANGSM 392

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERR 419
             N      E EIRR L+E DL+E +VALP  LF  T I   +W+L+  K+       R+
Sbjct: 393 SSNTNN---EGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRK 449

Query: 420 GKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           G+V  I+A    +   R      R    +   +I   + + +  K
Sbjct: 450 GEVLFIDARQTGFMKDRVL----RDFTTEDIAKIAATFHAWQTDK 490


>gi|170768502|ref|ZP_02902955.1| type I restriction-modification system, M subunit [Escherichia
           albertii TW07627]
 gi|170122606|gb|EDS91537.1| type I restriction-modification system, M subunit [Escherichia
           albertii TW07627]
          Length = 539

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/524 (20%), Positives = 187/524 (35%), Gaps = 81/524 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  +  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR- 419
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPTK 399

Query: 420 ------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                 G+   I+A +L T I    K    +  +    I D Y +               
Sbjct: 400 GYRNRQGETLFIDARNLGTMISRTTK---ELTTEDIATIADTYHA--------------- 441

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
              R      L        + L + E    + K++ L      D
Sbjct: 442 --WRSTPEE-LAARIARGDSKLEKYEDQAGFCKVATLQDIKDND 482


>gi|206577799|ref|YP_002240753.1| type I restriction-modification system, M subunit [Klebsiella
           pneumoniae 342]
 gi|206566857|gb|ACI08633.1| type I restriction-modification system, M subunit [Klebsiella
           pneumoniae 342]
          Length = 814

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    +   G SF       +  L +     + +   I   ++  + K + ++ DF
Sbjct: 45  YKGDPDGIILIPKGASF-----DDMVALKNDKEIGDKINKIIRKLAEENDLKGVIDEADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMIDRLTKLVGIFEGLDLSSNRADGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRILAKVI------SITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               L   GQE++  T A+    M++         + +  I QG+TLS   +       K
Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEANGKLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K          + K     RF  G+P   +G   FL+H+   L+   
Sbjct: 257 AFDFAVANPPFSNKN----WTSGLDPKKDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469
                  R+G + +I+A+  +     +G K R +      +I+D++   R    +SRM+ 
Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTVSGYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 LSE 423


>gi|19881239|gb|AAM00849.1|AF486550_5 HsdM [Campylobacter jejuni]
          Length = 500

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 103/546 (18%), Positives = 193/546 (35%), Gaps = 64/546 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            L + +WK+A+ L  +     +  ++L    LR +  +       + ++           
Sbjct: 8   KLEDALWKSADKLRKNIDAAGYKHIVLGLIFLRYISDSFMQKYEELLKEQDDGADPEDAD 67

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSS 122
           E     A   F+   +   + +        +          I   +D  K +        
Sbjct: 68  EYL---ADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEAMDEIEKHNDTLKGVLPKVYAKD 124

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            +     +  L ++      I          V+ +++E+ +  F     +    F TP+ 
Sbjct: 125 NL----DSKCLGELIDLIGNIAF-DTGKSTDVLGHVFEYFLGEFALAEGKQGGQFYTPKC 179

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           VV L   +L                 ++DP CG+GG    +   V            +  
Sbjct: 180 VVELLVTML-----------EPYKGRVFDPCCGSGGMFVQSEEFVKSH---QGRLDDISI 225

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T+ +    + IR++ES      ++      +   D     +  + ++NPPF 
Sbjct: 226 YGQESNQTTYKLAKMNLAIRKIESSQVIWNNEG-----SFLNDAHKDLKADFIIANPPFN 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +            GR+  G+P  S+ +  ++ H    L      GG A  VL+ 
Sbjct: 281 DSDWSGE-------LLENDGRWKYGVPPASNANYAWIQHFLYHLSPN---GGVAGFVLAK 330

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             L +      E+ IR+ L+E+DLI+ IV LP  LF  T I   LW +  +K  +   K 
Sbjct: 331 GALTSNTTN--EAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKT 388

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKV 480
             I+A DL T      ++ + +N D   QI +IY + +NG      DY    G+ + + +
Sbjct: 389 LFIDARDLGT---RINRRNKTLNKDDINQIANIYKAWKNG-----TDYEDIKGFCKSVSI 440

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                +S++L       L             +  +      ++ ++      E  + E I
Sbjct: 441 DEIRELSYVLTPGRYVGLADS--------DDEFDFDTRFNELLAKLKSQIKTEQELSEII 492

Query: 541 KSNEAK 546
             N  K
Sbjct: 493 LKNLEK 498


>gi|242243195|ref|ZP_04797640.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis W23144]
 gi|242233349|gb|EES35661.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus epidermidis W23144]
          Length = 518

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 186/491 (37%), Gaps = 65/491 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   + + ++       
Sbjct: 9   QQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLKEDNISYAE 68

Query: 66  NIDLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAI 114
             + E++ +           F    +   S L         E       I    ++ +  
Sbjct: 69  AWENEAYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINKIEESTRGE 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             + DF    A ++            +  L+ K+  N + +      +   ++ + YE+L
Sbjct: 129 DSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDMLGDAYEYL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  +   ++              ++ +YDPTCG+G  L  
Sbjct: 189 IGQFAANAGKKAGEFYTPQQVSKILAKIVTTNK--------PNLKNVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +   +   +GQE    T  +    ML+  +           I    TL
Sbjct: 241 VG----------READVRFYYGQEYNNTTFNLARMNMLLHDVN-----YTRFKIDNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G++F   ++NPP+  KW  D   ++ E  +G        L   S     F+ H+
Sbjct: 286 ENPAFRGEKFDAVVANPPYSAKWSADPSFLDDERFSGY-----GKLAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP +LFF T
Sbjct: 341 IHYL----DDNGTMAVVLPHGVLFRGAA---EGTIRKYLIEEKNYLDAVIGLPANLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  E    V  I+A+  +      GK +  + D+   +I++ Y +RE 
Sbjct: 394 SIPTSILVF--KKCREDSDNVLFIDASQSFEK----GKNQNHLTDEDVDKIVETYRNRET 447

Query: 462 GKFSRMLDYRT 472
                 +    
Sbjct: 448 IDKFSYVASLD 458


>gi|153805904|ref|ZP_01958572.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185]
 gi|149130581|gb|EDM21787.1| hypothetical protein BACCAC_00144 [Bacteroides caccae ATCC 43185]
          Length = 508

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 115/530 (21%), Positives = 199/530 (37%), Gaps = 74/530 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +L NF+++    L G     +F   I P    +R+    +       E+      S  D
Sbjct: 25  QNLYNFLFEACNILRGPVSQDNFKDYITPILYFKRISDVYDEETQTALEE------SGGD 78

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--------DNAKAIFEDFDF 120
            E       + F        S +   +   NL + I            D    +   F  
Sbjct: 79  EEYASLPEQHRFVIPDGCHWSDIRERS--ENLGAAIVGAMRGIELANPDTLYGVLSMFSA 136

Query: 121 SSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                +   +   +  + ++ S   L  +  P  +M + YE L+++F  +    A +F T
Sbjct: 137 QKWTDKKNLSDGKIRDLIEHLSTRRLGNNDYPADLMGDAYEILLKKFADDSKAQAGEFYT 196

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV L   +L           P    T+YDP CG+GG L +A+ H+     +H     
Sbjct: 197 PRSVVSLLVRIL----------DPKPGETVYDPACGSGGMLIEAVQHM-----NHSSLCC 241

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYC 295
               GQE      A+    + +             NI QG TL            +F   
Sbjct: 242 GSIFGQEKNVVNSAIAKMNLFLHG-------ASDFNIMQGDTLRSPKILQNGEIAKFDCV 294

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF       +     E  + + GR   G P  S G   ++ H+   +    +G GR
Sbjct: 295 IANPPFSL-----EKWGSVEWSSDKYGRNVWGTPSDSCGDYAWIQHMVKSM---ASGNGR 346

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+V+    LF G     E  IR  L+++DL+EA+V L   LF+ T ++    IL   K 
Sbjct: 347 MAVVMPQGVLFRGNE---EGRIREKLVKSDLVEAVVTLGDKLFYGTPLSPCFLILRRLKP 403

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML------ 468
                +V +I+ T + T  R     + I++ +   ++ ++Y + E+ + FS+++      
Sbjct: 404 AAHSARVLMIDGTKILTVKRA----QNILSPEDVNRLYELYTNYEDVEDFSKVVTLDDIA 459

Query: 469 -------DYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPL 510
                    +   Y + ++ RP        K     +   +  +RKL  L
Sbjct: 460 AKDYDLSPNKYVEYHKEEI-RPYAEVLAEFKAAYEEVKRFEGEFRKLINL 508


>gi|89900159|ref|YP_522630.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89344896|gb|ABD69099.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 697

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 181/719 (25%), Positives = 287/719 (39%), Gaps = 103/719 (14%)

Query: 10  SLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
             A  IW  A+ L G   K +++   ++PF  L  LE  L   +     +Y    G+  D
Sbjct: 11  EYAGKIWDTADTLRGAGIKESEWPTYMMPFFALMMLESRLRRFKQERIAEYEEETGAAFD 70

Query: 69  LESFVKVA---------GYSFYNTSEYSLSTLGST------NTRNNLESYIASFSDNAKA 113
            E               G  ++         L  T      N  N L S++ S+  + K 
Sbjct: 71  PEDATHAKWLDDTAKAVGKGYHKDLLLHDKGLRETCLVPGGNFLNRLLSHLNSYDPDTKK 130

Query: 114 IFE--------DF-DFSSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +           F D     + L       LY   + ++ I+L P    +  ++ I EH+
Sbjct: 131 LLGIDYAQGSAKFLDMQGKASDLNARDNNPLYPFAQKWASIDLTP--FDNSEITTIEEHI 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            R++    +E A +  TP DV+ LATA++        K   G+   +YD  CG G FL  
Sbjct: 189 KRKWADISAETAGEQYTPSDVIDLATAII-IELRREGKGGTGIAD-VYDMACGGGNFLFA 246

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + + D      +       GQEL     A+            + R      I+ G+TL
Sbjct: 247 TEDALRDAFPKLSVRTR----GQELNDPLFALA---------SIEARFREDAQIEWGNTL 293

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMH 341
           + DLF   +F   ++NPP+G  W+  K ++  +      GRF    +P  SDG +LFL H
Sbjct: 294 TNDLFLLDKFDAIVANPPYGVDWKDFKQSLGMDA----SGRFAKDRMPPTSDGQLLFLQH 349

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
            A  L       G AAIV S S LF+G AG GESE RRWL++  D++EAI+ LP + FF 
Sbjct: 350 AAFHLSEV----GVAAIVHSGSTLFSGDAGGGESETRRWLIQQQDIVEAIIQLPKNEFFN 405

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-QRRQILDIYVSR 459
           T I+TYLWIL+  K + R+GKV LINA D +  ++    K+    D+     I+  + + 
Sbjct: 406 TGISTYLWILNRAKPQARKGKVLLINAEDQFVKLKKNLNKKNCKIDEANCAAIVKAFRAC 465

Query: 460 ENGKFSRMLDYRTFGYRRIKVL--------RPLRMSFILDKTGLA-RLEADITWRKLSPL 510
           ++G  S++L      Y +++++        R ++    L+   +   +       K  PL
Sbjct: 466 KDGPISKVLTVDQLLYNKVEIILHRHDAEGRAIQEETALNGEVITVTIGGQSHIIKNGPL 525

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK-----SNEAKTLKVKASKSFIVAFINAFG 565
            +   L   +           AE+   +S K      NE   +++    +     +    
Sbjct: 526 IKPDHLTTKEAAAAFNEAIKAAETLTVQSGKLTYTRDNETGAIRLDDGTTLSELGLGVLA 585

Query: 566 RKDPRAD----PVTDVNGEWIPDTNLTEYENVPYLES-------IQDYFVREVS-PH--V 611
            K   A      V  V     P     + E   +          I+D+    V  P   V
Sbjct: 586 VKAKVAKARGAEVLKVEVTLGPLKE-KDTETTAFSFDPAGNDAIIRDFLATWVKEPFERV 644

Query: 612 PDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV-----EAQIA 665
           PDA                VG EINFN+ F +      ++D+  +L  +     E +  
Sbjct: 645 PDA--------------VTVGCEINFNKQFPKKSEVGTVKDLLEKLHRLNAKGAEQEAD 689


>gi|328676367|gb|AEB27237.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida Fx1]
          Length = 443

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 166/469 (35%), Gaps = 56/469 (11%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + +  + 
Sbjct: 1   MVKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYAEL--QS 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112
             +       E         F+  ++   S L +      +          I   +++ K
Sbjct: 59  EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L                 ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P   + +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPAGNANYAWIQHFLYHLAPT-- 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  VL+   L +    SGE +IR+ L+E +L++ IV LP  LF  T I   LW + 
Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDIRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI- 378

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             K   +   +  I+A +    I    K     +DD   +I   Y + +
Sbjct: 379 --KRGRKTKDILFIDARNKGHLINRRTK---EFSDDDITEIAQTYHNWK 422


>gi|331681327|ref|ZP_08381964.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
 gi|331081548|gb|EGI52709.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
          Length = 539

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 107/562 (19%), Positives = 208/562 (37%), Gaps = 78/562 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +  +T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  +  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF--------- 464
                +G+   I+A +L T I    K    +  +    I D Y +  +            
Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTTEDIATIADTYHAWRSTPEELAARIARG 456

Query: 465 -SRMLDYRT-FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            S++  Y    G+ ++  +       ++L               +     ++   ++ K 
Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513

Query: 522 MMQQIYPYGWAESFVKESIKSN 543
           + +Q+      +  +++++++ 
Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535


>gi|259907263|ref|YP_002647619.1| Type I restriction modification DNA modification domain protein
           [Erwinia pyrifoliae Ep1/96]
 gi|224962885|emb|CAX54366.1| Type I restriction modification DNA modification domain protein
           [Erwinia pyrifoliae Ep1/96]
          Length = 568

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 100/525 (19%), Positives = 174/525 (33%), Gaps = 97/525 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           M          L +  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTKLF 60

Query: 56  -------------------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN- 95
                                +Y       +++E +       F+        TL S   
Sbjct: 61  RQVGNADNTYAIPREEYDSEAEYQQAIDQELEVEDYY-AEKNVFWVPKAARWETLKSQAA 119

Query: 96  --TRNNLESYIASFS----------DNAKAIFE--DFDFSSTIARLEK----AGLLYKIC 137
               + L                  DNA    E  +      + R+        +L  + 
Sbjct: 120 LPVGSVLGRDENGKELKLRSVSLLIDNALDKIEQSNGKLKGVLNRIAHYQLGNEVLIGLI 179

Query: 138 KNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             FS                    ++ ++YE+ + +F     +    + TP+ +V L   
Sbjct: 180 NTFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVE 239

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPILVPHG 244
           +L                 +YDP  G+GGF   +   +            +    +V +G
Sbjct: 240 MLQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKIVVYG 288

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE  P T  +    M IR ++ D         +   TL  D     R  + ++NPPF  K
Sbjct: 289 QESNPTTWRLAAMNMAIRGIDFDFGT------KNADTLLDDQHPDLRADFVMANPPFNMK 342

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                       K     R+  G P   + +  ++ H+ + L      G  A ++ + S 
Sbjct: 343 EW-------WSAKLENDVRWQYGTPPQGNANFAWMQHMIHHLAPQ---GSMALLLANGSM 392

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERR 419
             N      E EIRR L+E DL+E +VALP  LF  T I   +W+L+  K+       R+
Sbjct: 393 SSNTNN---EGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKNKSGGNGKAHRK 449

Query: 420 GKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           G+V  I+A    +   R      R    +   +I   + + +  K
Sbjct: 450 GEVLFIDARQTGFMKDRVL----RDFTTEDIAKIAATFHAWQTDK 490


>gi|323935282|gb|EGB31635.1| N-6 DNA methylase [Escherichia coli E1520]
          Length = 539

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 208/562 (37%), Gaps = 78/562 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +  +T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  E  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTEDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF--------- 464
                +G+   I+A +L T I    K    +  +    I D Y +  +            
Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTAEDIATIADTYHAWRSTPEELAARIARG 456

Query: 465 -SRMLDYRT-FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            S++  Y    G+ ++  +       ++L               +     ++   ++ K 
Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513

Query: 522 MMQQIYPYGWAESFVKESIKSN 543
           + +Q+      +  +++++++ 
Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535


>gi|329919647|ref|ZP_08276625.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners SPIN 1401G]
 gi|328937299|gb|EGG33723.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners SPIN 1401G]
          Length = 502

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 200/540 (37%), Gaps = 60/540 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  +A+     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D     +       T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I+++P++LF+   ++  LW ++ 
Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISMPSNLFYSVTLSVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K ++ +     I+A  +   +       R  +++  +++   +   +NG          
Sbjct: 380 GKKQKGKT--LFIDARHMGHMVDQS---HRDFSEEDIQKLATTFEKFQNG-----TLENV 429

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+  +       +  +IL       +E      +      +     L  M ++ +    
Sbjct: 430 KGFCYVATTEDIAKQDYILTPGRYVGIEDQEDDGEPFDEKMTRLTSELSEMFKKSHKLED 489


>gi|116255297|ref|YP_771130.1| putative type I restriction enzyme [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115259945|emb|CAK03042.1| putative type I restriction enzyme [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 519

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 183/475 (38%), Gaps = 63/475 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +           ++K A+ L G+ + +++  V L    L+ +  A E   + +     
Sbjct: 1   MAKDNNGDLGFTAELFKAADKLRGNLEPSEYKHVALGLIFLKYISDAFEGLHARLTA--D 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---------SDNA 111
            +  +    E     A   F+  +E     L +   R  +   I            ++  
Sbjct: 59  EYADAEDPEEYL---AENVFWVPTEARWPFLQANAKRPEIGKLIDEAMEAIERFPSNEGL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEV 170
           K +        T+ +     +L ++   FS I LH        ++  +YE+ +  F    
Sbjct: 116 KGVLPKNYARPTLNK----TMLGELIDLFSNIGLHDSKDTAKDLLGRVYEYFLSGFAGSE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TPR VV     +L                 +YDP CG+GG    + N + + 
Sbjct: 172 GKRGGEFFTPRSVVRTLVEML-----------EPYKGRVYDPCCGSGGMFVQSENFIEEH 220

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFT 288
           G        +  +GQE+   T  +    + ++ +++D        I+  +  +  +D   
Sbjct: 221 GGRRN---DIAVYGQEINHTTWRLAKMNLAVQGIDAD--------IRWNNEGSFHRDELP 269

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +  + L+NPPF       +       +  E  R+  G P   + +  +L H+ + L  
Sbjct: 270 DLKADFILANPPFNISDWGGE-------RLAEDTRWKFGKPPNGNANFGWLQHIIHHLAP 322

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G A +VL++  +      SGE EIR+ ++E D ++ +VALP  LF+ T I   LW
Sbjct: 323 R----GTAGVVLANGSM--SSQQSGEGEIRKAMIERDQVDCMVALPGQLFYSTQIPACLW 376

Query: 409 ILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           IL+  K+     +RRG++  I+A  L   +      RR    D   +I   Y   
Sbjct: 377 ILARDKSANGHRDRRGEILFIDARKLGFMVDRV---RREFTADDIEKITGAYHRW 428


>gi|227356295|ref|ZP_03840683.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus
           mirabilis ATCC 29906]
 gi|227163405|gb|EEI48326.1| site-specific DNA-methyltransferase (adenine-specific) [Proteus
           mirabilis ATCC 29906]
          Length = 534

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 110/581 (18%), Positives = 207/581 (35%), Gaps = 75/581 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           +    +       +W  A  L G  + +++  V+L    L+ +    E  RS + +    
Sbjct: 4   SPAKKTTKGFEETLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRSQLIK---N 60

Query: 62  FGGSNIDLESFVKVAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDNAKAI 114
              + +D++ F +     F+    S +S         +    +++    I   + +    
Sbjct: 61  GQEAFVDMDVFYQQ-DNVFFLPQVSRWSYVQERAKQDDIAVIIDTALSTIEKSNASLTGA 119

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS      +K   L    +N + +        + ++  +YE+ + RF +   +G 
Sbjct: 120 LPDNYFSRQGLEPKKLASLIDSIENINTLATECGVGEEDLVGRVYEYFLGRFAASEGKGG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ VV L   +L                 +YDP CG+GG    ++  V       
Sbjct: 180 GEFYTPKSVVTLLAEML-----------EPYQGKVYDPCCGSGGMFVQSLKFVESH---Q 225

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQEL   T+ +    + +R L  +         +   T   D     +  +
Sbjct: 226 GKSKDIAIYGQELTSTTYKLAKMNLAVRGLTGNLGE------RPADTFFADQHPDLKADF 279

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF             E +     RF G   P   + +  +++H+ +KL      G
Sbjct: 280 IMANPPFNL------KDWRNEAELTNDPRFAGFRTPPTGNANYAWILHMLSKLSEDGVAG 333

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
              A   + S   N    SGE EIR+ L+E+D IE ++ALP  LFF T I   LW +S  
Sbjct: 334 FVLA---NGSMSSN---TSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCLWFISKS 387

Query: 414 KTE-------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           K         +R+G+   I+A  L T I      ++ +  +    I D + +  +     
Sbjct: 388 KQASAKYGYRDRQGETLFIDARHLGTMISRT---QKELTAEDIATIADTFHAWRSS---- 440

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD-ILKPMMQQ 525
                            L+      + G+ + +    + K++ L      D +L P    
Sbjct: 441 --------------ESELKRRIATKEIGIEQYQDQAGFCKVATLDDIKANDFVLTPGRYV 486

Query: 526 IYPYGWAESFVKESIKSNEAKTL--KVKASKSFIVAFINAF 564
                  +    E+      +TL  ++  +     A     
Sbjct: 487 GAAEVKDDGVAFETKMQELTQTLYRQMNEAAELDKAIRKNM 527


>gi|294794794|ref|ZP_06759929.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
 gi|294454156|gb|EFG22530.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
          Length = 510

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 107/548 (19%), Positives = 199/548 (36%), Gaps = 68/548 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  LWG     ++ KVI+    LR +  A E     + ++  
Sbjct: 1   MAAKNNTDIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFERRYEELIKE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E   ST+ S           +N    I   +   K 
Sbjct: 59  ---GDGFENDRDAYAEENIFFVPEEARWSTIASAAHTPEIGLVIDNAMRAIEKENTTLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L ++   F + +++        ++   YE+ I +F S    
Sbjct: 116 VLPKNYASPDLDK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFASYEGT 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YDP CG+GG    +   V     
Sbjct: 172 KGGEFYTPSSIVKTIVSIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR ++++     +       T   DL    + 
Sbjct: 222 NRG---TISVYGQESNADTWKMAKMNMAIRGIDANFGPYQA------DTFFNDLHKTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF       +       K  +  R+  GLP   + +  ++ H+ + L      
Sbjct: 273 DFIMANPPFNLSNWGQE-------KLKDDVRWKYGLPPAGNANYAWIQHMIHHLGP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L      SGE EIRR ++E+DLIE IVALPT LF+   I   LW ++ 
Sbjct: 322 NGKIGLVLANGAL--SSQSSGEGEIRRRIIEDDLIEGIVALPTQLFYSVTIPVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKF 464
            K  +++GK   I+A  +   +     K R   +             ++  +   ++G  
Sbjct: 380 CK--KQKGKTLFIDARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLVKTFEEFQSG-- 432

Query: 465 SRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
              +     G+  I  +    +  ++L       +E      +      +     L  M 
Sbjct: 433 ---MLVEKKGFSAIATIEDIAKQDYLLTPGRYVGIEEQEGDGEPFEEKMTRLTSELSDMF 489

Query: 524 QQIYPYGW 531
           ++ +    
Sbjct: 490 EKSHKLED 497


>gi|255011914|ref|ZP_05284040.1| N-6 DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313149748|ref|ZP_07811941.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138515|gb|EFR55875.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 497

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 186/492 (37%), Gaps = 66/492 (13%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTITKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108
                A   S  D E       + F          +       NL + I           
Sbjct: 59  ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112

Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            D    +   F       +  L  + +   + ++ S  +L     P  +M + YE L+++
Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRKLGNKDYPADLMGDAYEILLKK 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ 
Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPKPGETVYDPACGSGGMLIEAIR 221

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ D              GQE      A+    + +             N+ QG TL   
Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269

Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    +F   ++NPPF  +          ++K     R   G P  S G   ++ H
Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATGWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   +    +G GR A+V+    LF G     E+EIR+ L+E+DLIEA+V L   LF+ T
Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESDLIEAVVTLGDKLFYGT 378

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            ++    I+   K     G++ +I+ + + T  R     + I+ ++   ++  +Y +  +
Sbjct: 379 GLSPCFLIIRRMKPAHHSGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 434

Query: 461 NGKFSRMLDYRT 472
              +SR++  + 
Sbjct: 435 EEDYSRIVTLQE 446


>gi|304560217|gb|ADM42881.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Edwardsiella tarda FL6-60]
          Length = 812

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 190/483 (39%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF       +  L +     + +   I   ++  + K + ++ DF
Sbjct: 45  YKGDPYGMIVVPKGASF-----DDMVALKNDKEIGDKINKIIRRLAEENDLKGVIDEADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMIDRLTKLVGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRILAKVI------GITPDTPQDATVYDPTCGSGSLLLKVSD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               L   GQE++  T A+    M++         + +  I QG+TLS   +       K
Sbjct: 204 TRRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWQGNTLSDPQWKEADGRLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K       +    K     RF  G+P   +G   FL+H+   L+   
Sbjct: 257 AFDFAVANPPFSNKNWTSGLDL----KRDPFERFVWGVPPEKNGDYAFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRENLVKQGYIKGIIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469
                  R+G + +I+A+  +     +G K R +      +I+D++   R    +SRM+ 
Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTLPGYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 LSD 423


>gi|238918945|ref|YP_002932459.1| hypothetical protein NT01EI_1012 [Edwardsiella ictaluri 93-146]
 gi|238868513|gb|ACR68224.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 539

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 101/508 (19%), Positives = 189/508 (37%), Gaps = 66/508 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +         + +D++ F +
Sbjct: 22  LWDTANQLRGSVESSEYKHVVLSLVFLKFITDKFEAKRKQLMA---NGQEAFVDMDVFYQ 78

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                F+       S + +   ++++        + I   +        D  FS     +
Sbjct: 79  Q-DNVFFLPEAARWSYVKARAKQDDIAVIIDSALATIEKSNSALTGALPDNYFSRQGLEV 137

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +K   L    +N   +        + ++  +YE+ + RF +   +G  +F TP+ VV L 
Sbjct: 138 KKLASLIDTIENIDTLASECQLSEEDLVGRVYEYFLGRFAASEGKGGGEFYTPKSVVTLL 197

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L                 +YDP CG+GG    ++  V            +  +GQEL
Sbjct: 198 AEML-----------EPYEGKIYDPCCGSGGMFVQSLKFVESH---QGKSKDIAIYGQEL 243

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    + IR L  +         +   T   D     +  + ++NPPF      
Sbjct: 244 TTTTYKLAKMNLAIRGLIGNLGE------RPADTFFADQHPDLKADFIMANPPFNL---- 293

Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                  E +     RF G   P   + +  +++H+  KL +     G A  VL++  + 
Sbjct: 294 --KEWRSESELTNDPRFAGFRTPPTGNANYAWILHMLAKLSVD----GTAGFVLANGAMS 347

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR------- 419
           +    SGE EIR+ L+E+D IE ++ALP  LF+ T I   LW +S  K    R       
Sbjct: 348 SN--TSGEGEIRQKLIEDDRIECMIALPGQLFYTTQIPVCLWFISKSKQANPRYGYRARS 405

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-----------ENGKFSRML 468
           G+   I+A +L T +       + +      +I D + +            + G+ S   
Sbjct: 406 GETLFIDARELGTMVSRT---NKELTAADIARIADTFHAWRCSESELKRRVKAGEISISE 462

Query: 469 DYRTFGYRRI-KVLRPLRMSFILDKTGL 495
                G+ ++  +       F+L     
Sbjct: 463 YQDHAGFCKVATLDEIKANDFVLTPGRY 490


>gi|110639723|ref|YP_679933.1| type I restriction-modification system, M subunit [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110282404|gb|ABG60590.1| type I restriction-modification system, M subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 528

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 104/568 (18%), Positives = 212/568 (37%), Gaps = 84/568 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTR 52
           M+E       L   +W  A  L G     +F   IL F   + L           L+  +
Sbjct: 1   MSEDQKRI--LEQQLWNIANTLRGKMNADEFRDYILGFIFYKYLSEKMEIFANDILKQDK 58

Query: 53  -----------------SAVREKYLAFGGSNIDLESF--VKVAGYSFYNTSEYSLSTLGS 93
                             A+RE+ L   G  +  E             N    +     +
Sbjct: 59  ISFREITPKLKQGKEYLEAIREEALEKLGYFLKPEELFSEVAKRGRGSNDEGENFDEAKT 118

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFS 141
                +L+  + +   +      + DF +    ++            +  ++ K+  +  
Sbjct: 119 NFILEDLQKILINIQLSTMGTDSEEDFDNLFEDMDLNSTKLGKTPDARNAIIAKVLTHLD 178

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I+   + +   V+ + YE+LI +F S   + A +F TP+ V  +   ++          
Sbjct: 179 KIDFKLEDLESDVLGDSYEYLIGQFASGAGKKAGEFYTPQQVSKILAKIVTTEKH----- 233

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
               ++++YDPTCG+G  L      V D             +GQE+   T+ +    M++
Sbjct: 234 ---KLKSVYDPTCGSGSLLLRVAREVKDVAK---------FYGQEMNRTTYNLARMNMIL 281

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +          +I+Q  TL      G++F   ++NPPF  +W  +   +  +  +   
Sbjct: 282 HGVH-----YRKFDIKQEDTLEHPQHMGQQFEAIVANPPFSAQWSANPLHLSDDRFSQY- 335

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                 L   S     F+ H+ + L       G  A+VL    LF G A   E  IR++L
Sbjct: 336 ----GKLAPASKADYAFVQHMVHHLAE----NGIMALVLPHGVLFRGGA---EQHIRKYL 384

Query: 382 LE-NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +E  + ++A++ LP ++F+ T+I T + ++  +K  E    +  I+A+  +  ++     
Sbjct: 385 IEQKNYLDAVIGLPGNIFYGTSIPTCILVI--KKCREMPDNILFIDASKEFEKVKT---- 438

Query: 441 RRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           + I+ +    +I+D Y SR+  + +S     +        +  P R     ++     ++
Sbjct: 439 QNILREKHIDKIVDTYRSRKEIEKYSHCASLKEIAENDFNLNIP-RYVDTFEEEEEIDIQ 497

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIY 527
           A +   K     ++     +   M+++ 
Sbjct: 498 AVMAEIKNLEAKRTDLDKQIDVYMKELG 525


>gi|2408224|gb|AAB70709.1| HsdM [Klebsiella pneumoniae]
          Length = 539

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 116/577 (20%), Positives = 209/577 (36%), Gaps = 84/577 (14%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
            + +W  A  L G  + +++  V+L    L+ +    E  R  + ++     G  +++E 
Sbjct: 16  EDTLWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRKKMEDE---GQGDFLEMEV 72

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTI 124
           F +     FY   E   S +     ++++        S I   +   K    D  FS   
Sbjct: 73  FYQQ-DNIFYLPEEARWSFIKQHAKQDDIAVRIDTALSTIEKRNPTLKGALPDNYFSRQN 131

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               +   L  +      IE             + ++  +YE+ + +F +   +G  +F 
Sbjct: 132 L---ETKKLASLIDTIDNIETLAHETDVEALSKEDLVGRVYEYFLGKFAATEGKGGGEFY 188

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ VV L T +L                 +YDP CG+ G    ++  V           
Sbjct: 189 TPKCVVTLLTEML-----------EPFEGKIYDPCCGSAGMFVQSVKFVESH---QGKSR 234

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +GQEL   T+ +    + IR L ++         +   T   D     +  Y L+N
Sbjct: 235 DIALYGQELTATTYKLAKMNLAIRGLSANLGE------RPADTFFSDQHPDLKADYILAN 288

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPF             + +  +  RF G   P   + +  +++H+ +KL    +  G A 
Sbjct: 289 PPFNL------KDWRNDAELTKDPRFAGYRTPPTGNANYGWILHMLSKL----SANGTAG 338

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            VL++  +      SGE EIR  ++ENDLI+ ++ALP  LFF T I   LW ++  K  +
Sbjct: 339 FVLANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFFTTQIPVCLWFMTKSKAAD 396

Query: 418 R-------RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                   +G+   I+A +L T I    K    +  D    I D Y +            
Sbjct: 397 PAKGYRNRQGETLFIDARNLGTMINRTIK---ELTADDIAIIADTYHA------------ 441

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                 R      L        + LA+ E    + K++ + +    D +    + +    
Sbjct: 442 -----WRSTPEE-LVERVKRGDSKLAQYEDQAGFCKVATIAEMKANDYVLTPGRYVGAAE 495

Query: 531 WAESFVKESIKSNEAKT---LKVKASKSFIVAFINAF 564
             +  V    K  E       ++K ++    A     
Sbjct: 496 QEDDGVAFETKMRELSQTLFAQMKQAEELDKAIRQNL 532


>gi|308272900|emb|CBX29504.1| Putative type I restriction enzyme HindVIIP M protein [uncultured
           Desulfobacterium sp.]
          Length = 516

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/556 (17%), Positives = 197/556 (35%), Gaps = 58/556 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +       +   +WK A+ L  +    ++  ++L    LR +  A E   + ++     +
Sbjct: 6   KNNIKEEPIEKQLWKAADKLRKNIDAAEYKHIVLGLMFLRYISDAFEDLYNKLKNGDGEY 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIF 115
            G++ + +   K     F+   +   + L +      +          I   + + K + 
Sbjct: 66  AGADPEDKDEYKAE-NVFFVPEKARWAYLLAKAKLPEIGKVVDEAMDAIEKDNPSLKDVL 124

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                 S +        L  +      I +         ++ +++E+ +  F     +  
Sbjct: 125 PKVFARSNL----DPTNLGGLIDLVGNIAMGAAKARSADILGHVFEYFLGEFALAEGKKG 180

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR VV L   +L                 ++DP CG+GG    +   VAD     
Sbjct: 181 GQFYTPRSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVADH---Q 226

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T  +    + IR ++S   +  ++      +   D     +  Y
Sbjct: 227 GKVSDISIYGQESNHTTWRLARMNLAIRGIDSSQVKWNNEG-----SFLNDSHKDLKADY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF       +          + GR+  G+P   + +  ++ H    L       G
Sbjct: 282 VIANPPFNDSDWSGEI-------LKKDGRWKYGIPPSGNANYAWIQHFLYHLSPS----G 330

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR- 413
           +A  VL+   L +    SGE +IR+ L+E+ +++ IV LP  LF  T I   LW LS   
Sbjct: 331 QAGFVLAKGSLTS--KTSGEGDIRKALIEDRMVDCIVNLPAKLFLNTQIPASLWFLSRNR 388

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              K   R  ++  I+A ++   I     + R ++ +    I   Y +  N       D 
Sbjct: 389 ANGKFRNRTNEIFFIDARNMGYLINR---RTRELSAEDINTISGTYHNWRNPDG-NYEDV 444

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
           + F      + R   + ++L       L       +        +  +     +Q+    
Sbjct: 445 KGFC-NSASIERVKELDYVLTPGRYVGL----PDDEDDFDFNERFSKLKSEFEEQLKEEE 499

Query: 531 WAESFVKESIKSNEAK 546
              + +K+++K  E K
Sbjct: 500 RLNALIKDNLKKIEIK 515


>gi|228475400|ref|ZP_04060119.1| type I restriction-modification system, M subunit [Staphylococcus
           hominis SK119]
 gi|228270583|gb|EEK12015.1| type I restriction-modification system, M subunit [Staphylococcus
           hominis SK119]
          Length = 518

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 113/550 (20%), Positives = 204/550 (37%), Gaps = 78/550 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A+DL G+    +F   IL     R L   +E     +  +      +
Sbjct: 9   QQQAELQKNLWSIADDLRGNMDANEFKNYILGMIFYRFLSEKIEEQAQILLAEDNIDYET 68

Query: 66  NIDLESFVKVAGYSF-----YNTSE-YSLSTLGSTNTRNNLESYIASFSDNAKAI----- 114
            +  E +  V    F     Y     Y    L     +   E  +   S+  K I     
Sbjct: 69  AMADEDYRPVLEQEFISRIGYVIEPQYLFGHLVKKIEKQAFE--MEDLSNAIKNIENSTR 126

Query: 115 -----------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNI 158
                      F+D D +S  +RL  +      L+ K+    S +      +   ++ + 
Sbjct: 127 GHDSEDDFIHLFDDLDLNS--SRLGNSNAARTKLISKVMMKISTLPFVHSDMEIDMLGDA 184

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ V  +   ++              I+++YDPTCG+G 
Sbjct: 185 YEYLIGQFAASSGKKAGEFYTPQQVSTILAKIVTVNKKD--------IKSVYDPTCGSGS 236

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L              +   +   +GQE    T+ +    ML+  +        +  I+ 
Sbjct: 237 LLLRVG----------REANVRQYYGQEYNSTTYNLARMNMLLHDVN-----YANFKIEN 281

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSM 336
           G T+     + +RF   ++NPP+  KW  D   +E         RF     L   S    
Sbjct: 282 GDTIEDPAISDERFEAVVANPPYSAKWSSDPQFLE-------DPRFSNYGKLAPKSKADF 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPT 395
            F+ H+   L    +  G  A+VL    LF G A   E  IR +L+ E + ++A++ LP 
Sbjct: 335 AFIQHMIYHL----DDNGTMAVVLPHGVLFRGAA---EGVIREYLIKEKNYLDAVIGLPA 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+I T + +   +K  E    V  I+A+  +      GK +  +  +   +I++ 
Sbjct: 388 NLFFGTSIPTSILVF--KKCREDDDNVLFIDASQSFEK----GKNQNHLTTEDVEKIVET 441

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y +RE   K+S              +  P  +    ++  +   +      ++       
Sbjct: 442 YKNRETLDKYSYAASLEEIAENDYNLNIPRYVDTFEEEEPIDLEQVQKDLNQIDDEIIEV 501

Query: 515 WLDILKPMMQ 524
             +I   + +
Sbjct: 502 EQEINNYLKE 511


>gi|254037298|ref|ZP_04871375.1| type I restriction-modification system [Escherichia sp. 1_1_43]
 gi|226840404|gb|EEH72406.1| type I restriction-modification system [Escherichia sp. 1_1_43]
          Length = 534

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/518 (19%), Positives = 197/518 (38%), Gaps = 72/518 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  + +       + +D++ F +
Sbjct: 17  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRKQLID---NGQEAFVDMDVFYQ 73

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                F+   +   S + +   ++++        S I   + +      D  FS     +
Sbjct: 74  Q-DNVFFLPPDARWSYVKARAKQDDIAVIIDTALSTIEKRNASLTGALPDNYFSRQGLEV 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++   L    +N   +    +   + ++  +YE+ + +F +   +G  +F TP+ VV L 
Sbjct: 133 KRLASLIDSIENIDTLANECELTEEDLVGRVYEYFLGKFAASEGKGGGEFYTPKAVVTLL 192

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L                 +YDP CG+GG    ++  V            +  +GQEL
Sbjct: 193 AEML-----------EPYQGKIYDPCCGSGGMFVQSLKFVESH---QGKSKDIAIYGQEL 238

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    + +R L  +         +   T   D     +  + ++NPPF  K   
Sbjct: 239 TSTTYKLAKMNLAVRGLSGNLGE------RPADTFFADQHPDLKADFIMANPPFNLKN-- 290

Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                  E +     RF G   P   + +  +++H+ +KL      G   A   + S   
Sbjct: 291 ----WRNEAELTNDPRFAGFRTPPTGNANYAWILHMLSKLSEDGTAGFVLA---NGSMSS 343

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERR 419
           N    SGE EIR+ L+E+D IE ++ALP  LFF T I   +W +S  K         +RR
Sbjct: 344 N---TSGEGEIRQKLIEDDRIECMIALPGQLFFTTQIPVCMWFISKSKKANPQYGYRDRR 400

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           G+   I+A +L T +      ++ +  +    I D + +  +                  
Sbjct: 401 GETLFIDARNLGTMVSRT---QKELTKEDIATIADTFHAWRSS----------------- 440

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
               L+     ++  + + +    + K++ L +    D
Sbjct: 441 -ESELKRRIEANEISVEQYQDQAGFCKVATLDEIKDND 477


>gi|163801599|ref|ZP_02195497.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174516|gb|EDP59318.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 504

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 189/463 (40%), Gaps = 54/463 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + + P    +RL        +   E +       
Sbjct: 2   NKNKLEDLLWGAAEFLRGQIDASDYKQYVFPLLFFKRLSDVYLEEYNEALELHEG----- 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       + F    E S   + +T  +    +++    I + ++    +F D  ++
Sbjct: 57  -DAEYAAMSMYHRFDIPEEASWEKVRNTSKDIGEAIQNALRLIEAKNERLHGVFGDAQWT 115

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 116 NK-ERLPDH-LLSDLIQHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 173

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL- 240
            VVHL T ++                + YDPTCGTGG L +A+  +   G          
Sbjct: 174 TVVHLMTRIM----------KLKPGESAYDPTCGTGGMLLNAVMDLRAQGEESSTNGQQW 223

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293
                +GQE+   T A+    M +  +E         ++ +G TL +  F      K+F 
Sbjct: 224 RGVHLYGQEVNLLTSAIARMNMFLHDIE-------EFDVMRGDTLGEPKFIENDQLKQFD 276

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPP+  K         ++      GR   G+P        F  H+   L+      
Sbjct: 277 VIFANPPYSIK-----KWNREKFAADPYGRNMYGVPPQGCADYGFYTHIIKSLKPDT--- 328

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA++     LF       E  IR+ ++E+D+IEA+V L  +LF+ + + + + +L+  
Sbjct: 329 GRAAMLWPHGVLFR----DSEQAIRKQVIESDIIEAVVGLGPNLFYNSPMESCVVVLNCN 384

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           K  ER+ K+  IN  +  T  R        ++DD    + + Y
Sbjct: 385 KPVERKNKILFINGIEHVTRERA----HSRLSDDDLDVLCEAY 423


>gi|332308206|ref|YP_004436057.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175535|gb|AEE24789.1| Site-specific DNA-methyltransferase (adenine-specific) [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 535

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 183/476 (38%), Gaps = 73/476 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R ++ E+    G S+   +    
Sbjct: 17  LWDTANKLRGSVESSEYKHVVLSLIFLKFISDKFEAQRKSLVEQ----GMSDYVEQIEFY 72

Query: 75  VAGYSFYNTSEYSLSTL----GSTNTRNNLESYI---ASFSDNAKAIFEDFDFSSTIARL 127
                F+   +   S +       +    +++ +      + + K    D  FS     L
Sbjct: 73  AKDNVFFLPEQARWSYIQQQMKQDDIAVKIDTALHTVEKNNPSLKGALPDNYFSRLG--L 130

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------------DRVMSNIYEHLIRRFGSEVSEGAE 175
             +  L  +    + I+ +                 + ++  +YE+ + +F +   +G  
Sbjct: 131 VSSK-LASLIDTINNIDTYTSKSSANECGSDDIKSEEDLVGRVYEYFLGKFAASEGKGGG 189

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ +V L   ++                 +YDP CG+GG    ++  +     + K
Sbjct: 190 EFYTPKSIVSLIAEMI-----------EPYKGKIYDPCCGSGGMFVQSLKFIDSHKGNKK 238

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T+ +    + +R + ++           G T  KD     +  + 
Sbjct: 239 ---DISIYGQEYTNTTYKLAKMNLAVRGISANLGEVA------GDTFFKDQHPDLKADFI 289

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF       +     E++  +  R+ G  +P   + +  ++MH+ +KL      G 
Sbjct: 290 MANPPFN------QKQWRGENELVDDPRWSGFDVPPTGNANYAWIMHMISKLSEHGTAGF 343

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             A   + S   N    SGE EIR+ ++E DL++ ++ALP  LF+ T I   LW +S  K
Sbjct: 344 VLA---NGSMSSN---TSGEGEIRKKIIEKDLVDCMIALPGQLFYTTQIPVCLWFISKNK 397

Query: 415 TE-----------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                         R+G+   I+A ++ + +       + +  D    I   Y + 
Sbjct: 398 KAVDASEDFAKRRNRQGETLFIDAREMGSMVSRV---NKELTTDDIAHIAQTYHAW 450


>gi|322411067|gb|EFY01975.1| type I restriction-modification system M protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 531

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/494 (21%), Positives = 191/494 (38%), Gaps = 76/494 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MT+   S + L   +W +A+ L      +D+   +L     + L   L        ++  
Sbjct: 1   MTDTNNSRS-LYQALWNSADILRSKMDASDYKSYLLGLIFYKYLSDKLLLAVCDNLDEPF 59

Query: 59  ----------YLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS---------TNTRN 98
                        F   ++  +    +     Y      + S L S              
Sbjct: 60  VSFSQAQALYQENFSDEDVHDDLVEVLMDELGYVIEPGLTFSFLVSEIYEGRFQLEALAQ 119

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
                I   ++  + +FED D  S   +L     ++   +  + K  + ++L        
Sbjct: 120 AFRD-IEQSNEAFENLFEDIDLYSK--KLGATPQKQNTTVSDVMKELNTLDLTVHAGD-- 174

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F S+  + A +F TP+ V HL T ++    +           TLYDPT
Sbjct: 175 ILGDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVFVGRED------KKGMTLYDPT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +             +   GQE+   T+ +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKRY-------SNQASTVSYFGQEVITSTYNLARMNMMLHGVPIE-----N 276

Query: 274 KNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
           ++++ G TL  D        F   L NPP+  KW      ++         RF     L 
Sbjct: 277 QHLRNGDTLDADWPTTEPTDFDGVLMNPPYSMKWSGAAGFLQ-------DPRFSAFGVLA 329

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ 
Sbjct: 330 PKSKADFAFLLHGYYHLKHS----GVMAIVLPHGVLFRGAA---EKKIRQHLLEEGAIDT 382

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP+++F+ T+I T + IL   +T +    V  I+A+  +   +N    +  + D   
Sbjct: 383 VIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFIKNKN----QNNMTDAHI 435

Query: 450 RQILDIYVSRENGK 463
            +IL  Y +RE+  
Sbjct: 436 EKILKTYEAREDVD 449


>gi|227893571|ref|ZP_04011376.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
 gi|227864623|gb|EEJ72044.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
          Length = 565

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 116/508 (22%), Positives = 202/508 (39%), Gaps = 77/508 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M   T +   L+N ++  A+ L       ++   +L     + L   L      V E   
Sbjct: 21  MANNT-TKTELSNALFSAADALRSKMDANEYKNYLLGIVFYKYLSDKLLYHVGEVLENNP 79

Query: 58  -----KYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGST---------------- 94
                +                   Y  SF    +++ + + +                 
Sbjct: 80  NLSLDQAQKLYEDQYRDPDLQDELKYSLSFSLEPKHTFTYILNEINGEARDEKGIKTFQI 139

Query: 95  -NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
            +  +     I S S + + +F+D    S   RL     ++A  +  + K    +E+   
Sbjct: 140 SDLADAFND-IESTSSDFEGLFQDVQLYS--PRLGANAQKQADTIANVIKAIGNLEIV-- 194

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
             P  V+ + YE+LI +F SE  + A +F TP+ V  L T L L         +     T
Sbjct: 195 HAPGDVLGDAYEYLIGQFASETGKKAGEFYTPQKVSELLTKLTLVNK------NYPNGMT 248

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L +   ++ D G        ++ +GQE+   T  +    M++  ++S  
Sbjct: 249 VYDPAMGSGSLLLNFRKYIEDVGGKENE---VIYYGQEINMSTFNLAKMNMILHGVDS-- 303

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               +++++ G TL +D     +  F   + NPP+ + W  +K  ++         RF P
Sbjct: 304 ---SNQHLRNGDTLDEDWPPLSQTMFDSVVMNPPYSQHWSANKGFLQ-------DPRFSP 353

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN
Sbjct: 354 YGVLAPKSKADYAFLLHGLYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRKKLLEN 406

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             I+A++ LP +LF+ T+I T + +L   K       V  I+A+  +   +N    +  +
Sbjct: 407 GSIDAVIGLPANLFYNTSIPTVIIVLKKDKENRS---VMFIDASKGFEKKKN----QNAL 459

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472
            ++  ++ILD Y  RE+ K    L    
Sbjct: 460 REEDIQKILDTYRKREDLKRYAHLAKYD 487


>gi|172039827|ref|YP_001799541.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171851131|emb|CAQ04107.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 528

 Score =  304 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 200/551 (36%), Gaps = 69/551 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------EKYLA 61
               + +WK A+ L G    + +  ++L    L+ +  A +  R  +             
Sbjct: 7   KEFEDTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRLELLAELEEEGATAEE 66

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIF 115
                 D +++++     F+   E     L       + +     +S      + A+A+ 
Sbjct: 67  IAEELEDRDAYLE--KNVFWVAKEARWDYLQRHSKGKTDDAGGEFKSIGKLIDEAAEALM 124

Query: 116 -EDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFG 167
            ++     T+     +       L ++   FS      +       ++  +YE+ + RF 
Sbjct: 125 TDNLSLEGTLPHNYNSDSVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFA 184

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +   +F TPR VV     +L                 +YDP CG+GG    A   +
Sbjct: 185 SAEGKRGGEFYTPRSVVRTLVEIL-----------EPTEGRVYDPCCGSGGMFVQAEKFL 233

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                    P  +  +GQEL   T  +    + I  L S    +     + G T ++D+ 
Sbjct: 234 DAHDKD---PSAIAIYGQELNERTWRLARMNLAIHALNSKGLGE-----RWGDTFARDIH 285

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G    Y L+NPPF          ++   +N +  R+  G+P   + +  ++ H+ +KL 
Sbjct: 286 PGVEMDYVLANPPFN---------IKDWVRNTDDKRWSYGVPPAKNANFGWMQHIISKLS 336

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                G   A   + +   N    SGE EIR+ +LE+D++  +V LP  LF  T I   +
Sbjct: 337 AQGEAGVVMA---NGTMTSN---TSGEGEIRKNMLEDDIVSCVVTLPAQLFRGTQIPVCV 390

Query: 408 WILSNRKTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           W  +  K        +RRG+  LI+A +L   +       R  +D+  ++I + + +   
Sbjct: 391 WFFAKDKGAGSKGFVDRRGEFLLIDARELGHMVDRTE---RTFSDEDIQKIANTFRTWR- 446

Query: 462 GKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           G+ S   +Y    GY + + +       + L          +    +      +     L
Sbjct: 447 GRSSAEGEYEDAPGYCKSVSLDEIREADYALTPGRYVGFAEEEEDGEPIDEKIARLTAEL 506

Query: 520 KPMMQQIYPYG 530
              + +     
Sbjct: 507 TAALDESARLN 517


>gi|95929209|ref|ZP_01311953.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684]
 gi|95134707|gb|EAT16362.1| N-6 DNA methylase [Desulfuromonas acetoxidans DSM 684]
          Length = 550

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/590 (16%), Positives = 197/590 (33%), Gaps = 97/590 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E      +L   +W  A+ L        +   +L    ++ +  A +  R  + E++ 
Sbjct: 1   MSE-QEFLQNLEKKLWNAADKLRSTLDAAQYKHAVLGLLFIKYVSDAFDIRRQELIEQFQ 59

Query: 61  AFG----------------GSNIDLESFVK---VAGYSFYNTSEYSLSTLGSTN------ 95
                                 I +E  V+        F+  +    + L          
Sbjct: 60  DENHDYYLDPADFASEVECQEEIAVELEVRDYYTEKNVFWVPALGRWANLQDNAKLPPGT 119

Query: 96  -------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
                                ++    I   +   K +         I        L ++
Sbjct: 120 KIEIKNGKTTTYEMRSVGRLIDDALDAIEKDNPKLKRVLNKSYGRLQI----DPAKLGEL 175

Query: 137 CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
               + I     ++    ++ ++YE+ + +F     +    F TP+ +V L   +L    
Sbjct: 176 IDLIATIPFKHASLQAKDILGHVYEYFLGQFALAEGKKGGQFYTPKSIVSLIVEML---- 231

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                        +YDP  G+GGF   +   + + G        +  +GQE    T  + 
Sbjct: 232 -------QPFSGRVYDPAMGSGGFFVQSEQFIKEHG---GKLGNVSIYGQEYNHTTWQLA 281

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              M+IR L+ +  ++ +      +T + D     R  + ++NPPF  K           
Sbjct: 282 AMNMVIRGLDFNFGKEPA------NTFTNDQHPDLRADFVMANPPFNMKEW-------DT 328

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
               +  R+  G P   + +  +L H+   L      GG   ++L++  +      + E 
Sbjct: 329 GVKDDDPRWHYGKPPSGNANFAWLQHMLYHLAP----GGSMGLLLANGSM--SSNTNTEG 382

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGKVQLINATDL 430
           +IRR L+E+DL+E +VALP  LF  T I   +W L+  K       +R GKV  I+A +L
Sbjct: 383 DIRRALVEHDLVECMVALPGQLFTNTQIPACIWFLTRNKKARGNLADRSGKVLFIDARNL 442

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
                      R    +  +++ D +   + G+     D   F      +    +  F+L
Sbjct: 443 GYMKDRV---LRDFKPEDIQKVADTFHVWQQGE--DYADEAGFC-CSATLEEIKKHDFVL 496

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
                     ++   +           +   + +Q       E  +K ++
Sbjct: 497 TPGRYVGAADEV---EDGEPFAEKMARLTTQLQEQFARSSELEGDIKRNL 543


>gi|149199876|ref|ZP_01876905.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155]
 gi|149137047|gb|EDM25471.1| hypothetical protein LNTAR_25420 [Lentisphaera araneosa HTCC2155]
          Length = 502

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 169/490 (34%), Gaps = 62/490 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT    +   +   +W   +   G      +   IL    L+ L    +      +++Y 
Sbjct: 1   MT-TQINQDDINKKLWSCCDIFRGTISADIYKDYILSMLFLKYLSDVWQDHYDNYKKQYG 59

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--------STNTRNNLESYIASFSDNAK 112
                +        +    F  + E +   L                L +   S     +
Sbjct: 60  -----DEPELIAEMMKSERFILSEESNYKYLYKKRHEAGNGERIDQALHAIEESNLSKLR 114

Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFG 167
            +F+D  F+        +K   L  + + F+  EL           ++ N YE+LI +F 
Sbjct: 115 GVFQDISFNSDKLGEEKQKNEHLKDLLEVFAEAELDLRPSRVGKLDIIGNAYEYLIAKFA 174

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +     A  F TP +V  L   +L           P     + DP  G+G  +      V
Sbjct: 175 AGGGSTAGQFFTPPEVSDLMAEIL----------DPQEGDEMCDPCTGSGSLIMKCGRKV 224

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                +H         GQE    T A+    M +   +       +  I+ G TL     
Sbjct: 225 QQ---NHNGSKNYALFGQESIGSTWALAKMNMFLHGED-------NHRIEWGDTLRNPKL 274

Query: 288 TG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   ++    +NPPF                + + GRF  G+P  + G   F+ H+
Sbjct: 275 IDSQGQLLQYDIVTANPPFSLD-----KWGHDGASDDKFGRFRRGIPPKTKGDYAFISHM 329

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      GR A+V+    LF G   S E +IR  L+E +L++ ++ LP +LFF T 
Sbjct: 330 IETLKPQS---GRMAVVVPHGVLFRG---SSEGKIRTKLIEENLLDTVIGLPANLFFGTG 383

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I   +        ++   KV  I+A+  +      GK +  ++ +  ++I+  +  RE  
Sbjct: 384 IPAAILYFK---KKKDDKKVLFIDASREFD----SGKNQNKLSSENVKKIIKTFNDREAI 436

Query: 463 KFSRMLDYRT 472
                L    
Sbjct: 437 DKYSYLASLE 446


>gi|300775817|ref|ZP_07085678.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Chryseobacterium gleum ATCC 35910]
 gi|300505844|gb|EFK36981.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Chryseobacterium gleum ATCC 35910]
          Length = 516

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 203/544 (37%), Gaps = 78/544 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL--------ECALEPTR 52
           M+E       L   +W  A  L G     +F   IL F   + L           LE  +
Sbjct: 1   MSEEQKKI--LEQQLWNIANTLRGKMNADEFRDYILGFIFYKYLAEKMEIYANSILEEDQ 58

Query: 53  -----------------SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
                             A+RE+ L   G  +              N   + L  L    
Sbjct: 59  IQFRDIKEDTPKGLEYIEAIREEALETLGYFLKPSELFSEITKRGDN--NFILEDLQKIL 116

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFS-STIARLEK--AGLLYKICKNFSGIELHPDTVPD 152
           T   L +      ++ + +F D D + + + R       L+ K+ K+   I+   +    
Sbjct: 117 TNIQLSTMGTQSEEDFEDLFSDMDLNSNNLGRTADARNTLIVKVLKHLDEIDFKLNDTEL 176

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ + YE+LI +F S   + A +F TP++V  +   ++              ++++YDP
Sbjct: 177 DVLGDAYEYLIGQFASGAGKKAGEFYTPQEVSKILAKIVTTGK--------NRLKSVYDP 228

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L      V D             +GQE+   T+ +    M++  +        
Sbjct: 229 TCGSGSLLLRVAREVKDVN---------NFYGQEMNRTTYNLARMNMILHGVH-----YR 274

Query: 273 SKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             +I+Q  TL          F   ++NPPF  KW  +   +  +  +         L   
Sbjct: 275 QFDIKQEDTLEHPQHLNDMPFEAIVANPPFSAKWSANPLFLNDDRFSQY-----GKLAPS 329

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
           S     F+ H+   L       G  AIVL    LF G A   E  IR++L+E  + ++A+
Sbjct: 330 SKADFAFVQHMIYHLAE----NGTMAIVLPHGVLFRGAA---ELHIRKYLIEQKNYLDAV 382

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +    K  E    +  I+A+  +  ++N    + ++ ++   
Sbjct: 383 IGLPANIFYGTSIPTCILVFKKCK--EDPDHILFIDASKEFEKVKN----QNMLREEHID 436

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y +R   + +S +   +        +  P    ++        ++     +++  
Sbjct: 437 KIVETYRNRTTIEKYSHLATLKEVEENDYNLNIP---RYVDTFEAEEEIDIQAVMQEIKS 493

Query: 510 LHQS 513
           L   
Sbjct: 494 LEAK 497


>gi|311033111|ref|ZP_07711201.1| Type I restriction-modification system methyltransferase subunit
           [Bacillus sp. m3-13]
          Length = 538

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 198/496 (39%), Gaps = 62/496 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGG 64
            +A  + + +W+ A  L G    +++   ILPF   R L    E   +    E++     
Sbjct: 2   SNARDITSKLWEMANKLRGTMDASEYKNYILPFMFYRYLSENQEEYLKVNDLEEFYEVTD 61

Query: 65  SNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIASFSDNAK------ 112
                +   +++    Y     Y+   + S         ++ +    SF+ NAK      
Sbjct: 62  DTEKEDYLEEISKGIGYAIDPAYTWDKIVSKIENHKIKASDFQDMFDSFNTNAKRNAVAE 121

Query: 113 ----AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
                +F D +   T    +  E+A  L  I    +      D+    ++ ++YE+LI +
Sbjct: 122 ADFANVFSDVNLGDTRLGSSTNERAKALNDIVLMINEFTFKDDSG-RDILGDVYEYLIGQ 180

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +   +F TP +V  +   ++ +  D       G    +YDPT G+G  L     
Sbjct: 181 FAANAGKKGGEFYTPHEVSQILAKIVTNDAD-----GTGDQFRVYDPTMGSGSLLLTVQK 235

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +     +      +  +GQEL   T+ +    +++  +           +++  TL  D
Sbjct: 236 EL----PNGDKEGSVEFYGQELNTTTYNLARMNLMMHGVNYRNME-----LKRADTLDAD 286

Query: 286 LFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336
               +        +F   +SNPP+ + W  D   V++E    +  RF G G+   S    
Sbjct: 287 WPFAEKDGTQIPLKFDAVVSNPPYSQNW--DTKDVDRE----KDTRFKGFGVAPASKADY 340

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H    L+      G  AIVL    LF G     E +IR+ +++N+L++ ++ LP +
Sbjct: 341 AFVLHGLYHLDKA----GTMAIVLPHGVLFRGA---SEGKIRKNIIDNNLLDTVIGLPPN 393

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+  +I T + +    +   +   +  I+A+  +     +GK +  +  +   +I+  Y
Sbjct: 394 LFYGASIPTCVLVF-KGREARKSKDILFIDASKEF----KKGKSQNKLTAENINKIIGTY 448

Query: 457 VSRENGKFSRMLDYRT 472
            +R++ +    +    
Sbjct: 449 SNRKDVEKYAHVASLD 464


>gi|312115547|ref|YP_004013143.1| type I restriction-modification system, M subunit [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220676|gb|ADP72044.1| type I restriction-modification system, M subunit [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 824

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/485 (21%), Positives = 192/485 (39%), Gaps = 75/485 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + + + +W++ + L G    + +   IL    ++ +                   
Sbjct: 1   MAVKKSQIYSSLWQSCDKLRGGMDASQYKDYILVLLFVKYVSDRY--------------- 45

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120
            +       V   G SF       +  L       + +   IA  ++    K + +  +F
Sbjct: 46  -AGDPNAVIVVPEGGSF-----ADMVKLRGDKEIGDRINKIIAKLAEANGLKGVIDVANF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    +L         L  +   F   EL+        D ++ + YE+L+R F +E  + 
Sbjct: 100 NDP-DKLGDGKEMIDRLSDLIAIFDRPELNFRKNRADGDDILGDAYEYLMRHFATESGKS 158

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP +V  +   ++        + +  + +TLYDPTCG+G  L  A          
Sbjct: 159 KGQFYTPAEVSRIIAKVI------GIRHAKSVSQTLYDPTCGSGSLLLKA---------R 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
            + P  +  +GQE +  T A+    M++             +I + +TLS   F      
Sbjct: 204 SESPVGITVYGQEKDVATRALAKMNMVLH-------DCPDADIVRDNTLSSPYFREKDQS 256

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            KRF + ++NPPF  K      ++  +      GRF  G P   +G   +L+H+   L+ 
Sbjct: 257 LKRFDFVVANPPFSDKAWTTGVSLGSD---DPDGRFEYGTPPAKNGDYAYLLHVIASLKS 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AI+L    LF G A   E+EIR+ ++    I+ I+ LP +LF+ T I   + 
Sbjct: 314 T----GKGAIILPHGVLFRGNA---EAEIRKNIIAKGFIKGIIGLPANLFYGTGIPACII 366

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           +L     + R G + +I+A+  +     +G K R +      +I+D +  +   + FSR+
Sbjct: 367 VLDKENADRRTG-IFMIDASKGFV---KDGNKNR-LRAQDIHKIVDAFTKQIEIEKFSRL 421

Query: 468 LDYRT 472
           +    
Sbjct: 422 VPLSE 426


>gi|253735333|ref|ZP_04869498.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726740|gb|EES95469.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 579

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 346 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 507

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 508 TIDKYSYSATLQEIAENDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 567 NAYLKELGVLKD 578


>gi|313892812|ref|ZP_07826393.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442743|gb|EFR61154.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 348

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 106/372 (28%), Positives = 180/372 (48%), Gaps = 44/372 (11%)

Query: 313 EKEHKNGELGRFGP---------GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
               K+    RF            +P+ISDG +LFL++  +K++     G R A V ++S
Sbjct: 4   NGWKKDILDSRFNAYLEDGTQLMMIPRISDGQLLFLLNNVSKMKTDTALGSRIAEVHNAS 63

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF G AGSGES  RR+++ENDL+EAI+ALP ++F+ T + T++W+LSN+K + R+GK+Q
Sbjct: 64  SLFTGDAGSGESNARRYMIENDLVEAIIALPDNMFYNTPLGTFIWVLSNKKEDRRKGKIQ 123

Query: 424 LINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
           LI+AT + + +R N GKK   ++ D R++I+ I++  E    SR+ D   FG+  + V R
Sbjct: 124 LIDATAMKSPLRKNMGKKNCELSSDIRKEIIRIFMDMEESDVSRVFDNDEFGFWLVTVER 183

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
            L++    D+   + +                    L  +   +    W+          
Sbjct: 184 SLKLRIYPDRKIPSSVFK-------KEEEAELVRRTLATLSDNVPLDDWSAFAKAT---- 232

Query: 543 NEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYL--ESIQ 600
                   K   + +         K   A  V+        D +L   E +P+     I 
Sbjct: 233 --------KLKAAILKKIRPYITEKSADAKTVSG-----ESDADLRTTEIIPFKYEGGID 279

Query: 601 DYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGV 660
            +   EV P+ PDA+         D++  ++GYE++F ++FY+    R++ +I  ELKG+
Sbjct: 280 QFMENEVHPYAPDAW--------YDEKNIKIGYELSFIKYFYKPMELRQMSEIVEELKGL 331

Query: 661 EAQIATLLEEMA 672
           EA    +L ++ 
Sbjct: 332 EADANGMLGDIL 343


>gi|258424533|ref|ZP_05687410.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9635]
 gi|257845128|gb|EEV69165.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9635]
          Length = 569

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 117/545 (21%), Positives = 205/545 (37%), Gaps = 68/545 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 60  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 119

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 120 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 178

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 179 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 238

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 239 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 290

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 291 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 335

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 336 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 390

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 391 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 443

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  + D Q  +I++ Y  +E
Sbjct: 444 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLTDAQVERIINTYKCKE 497

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P  +    ++  +   +     + +         +I 
Sbjct: 498 TIDKYSYSATLQEIAENDYNLNIPRYVDTFEEEEPIDLEQVQQDLKNIDKEIAQVEQEIN 557

Query: 520 KPMMQ 524
             + +
Sbjct: 558 AYLKE 562


>gi|1747491|gb|AAC44666.1| ALXA and HSDM [Mannheimia haemolytica]
          Length = 616

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/571 (17%), Positives = 191/571 (33%), Gaps = 82/571 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L   +W  A+ L  +    ++  ++L F  L+ +  +    ++ ++           
Sbjct: 81  LNELDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 140

Query: 57  ---EKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLSTLGST---NTRNNL--ESYI 104
                +     S I  E   +     A   F+   +     + S    N  + L      
Sbjct: 141 LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 200

Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151
              S      FE            + R+        +L  +   FS              
Sbjct: 201 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 260

Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L                
Sbjct: 261 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML-----------EPYSG 309

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF   A   +     +      +  +GQE    T  + V  M IR +  D
Sbjct: 310 RIYDPAMGSGGFFVQADRFIQAHAGNRNA---ISVYGQESNSTTRKLAVMNMAIRGIPFD 366

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +   TL   L   K+    ++NPPF +K                  R+  G
Sbjct: 367 FGD------KPEDTLLNPLHIDKKMDVVMANPPFNQKEW-------WNESLANDPRWAYG 413

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+   L       G+ A++  +  +      SGE +IR+ +++ DL+
Sbjct: 414 TPPQGNANFAWLQHMIYHLSPK----GKMALLPRNGSM--SSQTSGEGDIRKNIVQADLV 467

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ALP  LF  T I   +WI++  K    +G+V  INAT +           R    D
Sbjct: 468 EAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYLKDRV---LRDFTAD 522

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506
              +I D Y + +  K +   +   F Y    +    +  F+L        ++ +    +
Sbjct: 523 DIAKISDTYHNWQ--KQNGYENIPAFCYCA-TLDEIAKNDFVLTAGRYVGAVQEENDGVR 579

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
            +   Q     + +   Q           +K
Sbjct: 580 FAEKMQELTALLNEQFKQGRELEQQIAENLK 610


>gi|34557510|ref|NP_907325.1| type I site-specific deoxyribonuclease [Wolinella succinogenes DSM
           1740]
 gi|34483227|emb|CAE10225.1| TYPE I SITE-SPECIFIC DEOXYRIBONUCLEASE [Wolinella succinogenes]
          Length = 520

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/543 (18%), Positives = 200/543 (36%), Gaps = 75/543 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL---------- 60
           L   +W  A  L G     +F   IL F   + L   +E     + ++            
Sbjct: 9   LEQQLWNIANTLRGKMDADEFRDYILGFIFYKYLSEKMEYYADEILKEDEIGYLSLDENS 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKA 113
           A G   ++      +    ++       + +        +     +L   +     +   
Sbjct: 69  AEGQEYLEAIREEAIEKLGYFLKPSELFTQIAKRGNGDKNNFILEDLTKILRRIEQSTMG 128

Query: 114 IFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
              + DF      L+            K  L+ K+  +   I          V+ + YE+
Sbjct: 129 HESEDDFVHLFEDLDLSSTKLGKTEEAKNALIAKVLFHLDQINFELKNHDRDVLGDAYEY 188

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F +   + A +F TP+ V  +   ++              ++++YDPTCG+G  L 
Sbjct: 189 LIAQFAAGAGKKAGEFYTPQQVSKILAKIV--------TNGKSKLKSVYDPTCGSGSLLL 240

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                V+D  +          +GQEL   T+ +    M++  +          +I+Q  T
Sbjct: 241 RVAKEVSDVSA---------FYGQELNRTTYNLARMNMIMHDVH-----YRKFDIKQEDT 286

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG-LPKISDGSMLFL 339
           L        +F   ++NPPF   W  +   +  +       RF   G L   S     F+
Sbjct: 287 LEHPQHGAMKFEAIVANPPFSAHWSANPLHMSDD-------RFSQYGVLAPSSKADFAFV 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLF 398
            H+ + L    +  G  AIVL    LF G   S E  IRR+L+EN + ++A++ LP ++F
Sbjct: 340 QHMIHHL----DENGTMAIVLPHGVLFRG---SSEGTIRRYLIENKNYLDAVIGLPANIF 392

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I T + +   +K  E    +  I+A++ +   +N    + I+ D+   +I+  Y +
Sbjct: 393 YGTSIPTSILVF--KKCREDSEHILFIDASNDFEKAKN----QNILTDEHVEKIITTYKN 446

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           R   + +S +            +  P  +    ++  +         R++    ++    
Sbjct: 447 RIEIERYSHLAPLSEIAQNDYNLNIPRYVDTFEEEEAIDLEAVTRELREIDEQMKTTDAT 506

Query: 518 ILK 520
           I  
Sbjct: 507 IAA 509


>gi|254506511|ref|ZP_05118653.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 16]
 gi|219550685|gb|EED27668.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 16]
          Length = 514

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 105/526 (19%), Positives = 195/526 (37%), Gaps = 72/526 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G+    DF   IL     + L   L      +  +        +D +  + 
Sbjct: 13  LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGITFIGAVDNKELLN 72

Query: 75  ------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-------DFDFS 121
                 V    ++   +   S+L     +      I         I +         DF+
Sbjct: 73  DLREECVENLGYFIAPKQLFSSLAGRGKKQEFI--IDELDRTLADIEQSTTAADSADDFN 130

Query: 122 STIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                L+            +  L+ ++  +   I+ H +     ++ + YE+LI +F S 
Sbjct: 131 GLFEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASG 190

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  +   L+            G ++++YDPTCG+G  L      V  
Sbjct: 191 AGKKAGEFYTPQQVSKILAKLVSLN---------GNVKSVYDPTCGSGSLLLRVAREVGS 241

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                         GQE  P T+ +    ML+  +  D       +I+   TL   +   
Sbjct: 242 HNLE--------FCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLE 288

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +RF   ++NPPF   W  ++  +  E            L   S     F++H+ ++L   
Sbjct: 289 QRFDAVVANPPFSANWSANELHLNSERFADY-----GKLAPKSKADFAFVLHMIHQL--- 340

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLW 408
            N  G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +FF T I T + 
Sbjct: 341 -NETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIFFGTGIPTCIL 396

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           +   +K  +    V  I+A++ +      GK +  + +D   +I++ Y  RE+ + F+ +
Sbjct: 397 VF--KKNRKNDDNVLFIDASNHFEK----GKAQNFMRNDDVERIVEAYSKRESVEKFAHV 450

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                       +  P    ++        +  D    +L+ L   
Sbjct: 451 AKLIEIEENDYNLNIP---RYVDTFEEEEPVALDTVASELAELETK 493


>gi|50914977|ref|YP_060949.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
 gi|50904051|gb|AAT87766.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10394]
          Length = 526

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 120/502 (23%), Positives = 197/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        +++ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLDQHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+   ++  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTDAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            FS      ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFSDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +  + +   + 
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGVAIENQHLGNA 280

Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
                 TL  D  T +  ++   L NPP+  KW      +          RF   G L  
Sbjct: 281 -----DTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D   +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|93006185|ref|YP_580622.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92393863|gb|ABE75138.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 529

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 201/549 (36%), Gaps = 70/549 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-YLAFGGSNIDLESFV 73
           +W  A  L G  + +++  ++L    L+ +    E  R  + +  Y              
Sbjct: 21  LWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEQQRQKLIDTGYEKHINMVQAY---- 76

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIAR 126
                 FY   E   S +     + ++        S I   + + K    D  FS     
Sbjct: 77  -TKDNVFYLPEESRWSFIQQNAKQEDIALKIDTALSTIEKTNQSLKGALPDNYFSRLGLT 135

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
             K   L  +  N   I        +  +  +YE+ + +F +   +G  +F TP+ VV+L
Sbjct: 136 ASKLAALIDVVNNIDTIGNP----EEDTVGRVYEYFLGKFAATEGKGGGEFYTPKSVVNL 191

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP CG+GG    ++  +     + K    +  +GQE
Sbjct: 192 IAEMV-----------EPYQGKIYDPCCGSGGMFVQSIKFIESHHGNTK---DVSIYGQE 237

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +    + IR + S+     +       T  KD     +  + ++NPPF +   
Sbjct: 238 YTSTTYKLAKMNLAIRGISSNLGDVAA------DTFFKDQHEDLKADFIMANPPFNQ--- 288

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                     +  +  R+ G   P   + +  +++H+ +KL       G A  VL++  +
Sbjct: 289 ---KDWRASDELVDDPRWAGYPTPPTGNANYAWILHMISKLSEH----GTAGFVLANGSM 341

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
                 SGE EIR  +++NDL++ ++ALP  LF+ T I   LW +S  K           
Sbjct: 342 ST--TTSGEGEIREQIIKNDLVDCMIALPGQLFYTTQIPVCLWFISKDKQATSADSKAKG 399

Query: 417 --ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR--T 472
              R G+   I+A ++   I    K     + D    I   Y +    K +   +     
Sbjct: 400 LRNRSGETLFIDARNIGAMIDRTHK---EFSTDDIEAIAKTYHAWRGEKEAGGYEAYADE 456

Query: 473 FGYRRIKVLRPLRMS-FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            GY +   L  ++ + ++L                     ++  L++ + +  Q+     
Sbjct: 457 AGYCKSASLDDIKANDYVLTPGRYV---GAAAIEDDGIPFETKMLELSQTLYAQMQESEK 513

Query: 532 AESFVKESI 540
            ++ +++++
Sbjct: 514 LDATIRQNL 522


>gi|239629954|ref|ZP_04672985.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527566|gb|EEQ66567.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 532

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 196/494 (39%), Gaps = 77/494 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M + T    +L   +W +A+ L      +++   +L     + L           LE   
Sbjct: 1   MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 53  SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107
           + + +       A+   ++  +    V+    Y+     + + L         +  +   
Sbjct: 59  TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116

Query: 108 SDNAKAI----------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
           S + + I          FED D  S   +L     ++  ++  + K  S ++L      +
Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYS--RKLGATPQKQNQVISDVMKQISTLDLVGQN-TN 173

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ + YE+LI +F S+  + A +F TP+ V  L T + +   + +         T+YDP
Sbjct: 174 DILGDAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDP 227

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L +A  +             +   GQEL   T+ +    M++  +  +     
Sbjct: 228 TMGSGSLLLNARRY-------SNERLSINYFGQELNTSTYNLARMNMILHGVPIN----- 275

Query: 273 SKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP 329
           ++++    TL +D        F   + NPP+   W+  K             RF   GL 
Sbjct: 276 NQHLHNADTLDQDWPIEEPTNFDAVVMNPPYSAHWQPSKGTEN-------DPRFVSYGLA 328

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H    L+      G   IVL    LF G A   E  IR+ LLEN  I+ 
Sbjct: 329 PKSKADFAFLLHGYYHLKDT----GVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDT 381

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + +L   K       V  I+A+  +   +N    +  + DD  
Sbjct: 382 VIGLPANIFFNTSIPTTVTVL---KKSRTTRDVLFIDASKEFEKAKN----QNHLTDDNI 434

Query: 450 RQILDIYVSRENGK 463
           ++IL+ Y++R++  
Sbjct: 435 QKILETYINRKDVD 448


>gi|289550025|ref|YP_003470929.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus lugdunensis HKU09-01]
 gi|289179557|gb|ADC86802.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus lugdunensis HKU09-01]
          Length = 518

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 115/545 (21%), Positives = 206/545 (37%), Gaps = 80/545 (14%)

Query: 1   MTEFTGSAASLAN---FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M+        LA+    +W  A DL G+    +F   IL     R L    E   + + +
Sbjct: 1   MSTTEKQRQQLADLQKKLWSIANDLRGNMDANEFKNYILGLIFYRFLSEKNEDIAAGLLK 60

Query: 58  KYLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           +        ++ +++        +A   F    ++  S L +       +  I   S+  
Sbjct: 61  EDDISYEEAMNNDTYKPIVEKELIARIGFVIEPQFLFSNLINKIEAQTFQ--IEDLSNAV 118

Query: 112 KAI----------------FEDFDFSSTIARLEKAG-----LLYKICKNFSGIELHPDTV 150
           K +                F+D D +S  +RL         L+ K+    + +      +
Sbjct: 119 KNVENSTRGHDSEDDFIHLFDDMDLTS--SRLGNTNAKRTQLISKVMVQIATLPFVHSDL 176

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++ + YE+LI +F +   + A +F TP+ V  +   ++    + L        R++Y
Sbjct: 177 EIDMLGDAYEYLIGQFAASAGKKAGEFYTPQQVSTILAKIVTTGRNDL--------RSIY 228

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L                  +   +GQE    T+ +    ML+  +      
Sbjct: 229 DPTCGSGSLLLRVGAEAK----------VRQYYGQEYNSTTYNLARMNMLLHDVN----- 273

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I+   TL       +RF   ++NPP+   W  D   +E E  +         L  
Sbjct: 274 YKQFQIENDDTLESPAVHDERFDAVVANPPYSAHWSADPSFLEDERFSNY-----GKLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389
                  F+ H+   L+      G  A+VL    LF G A   E  IR++L+E  + I+A
Sbjct: 329 KKTADYAFIQHMIYHLDDH----GTMAVVLPHGVLFRGNA---EGTIRKYLIEDKNYIDA 381

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LFF TNI T + +   +K  E    V  I+A+  +      GK +  + DD  
Sbjct: 382 VIGLPANLFFGTNIPTCILVF--KKCREESDDVLFIDASQSFEK----GKNQNHLTDDDV 435

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +I+D Y  RE   K+S ++           +  P    ++        ++ D   +KL 
Sbjct: 436 NKIVDTYRQRETIDKYSFVVSLDEIRENDYNLNIP---RYVDTFEEEEPIDLDQVQQKLK 492

Query: 509 PLHQS 513
            + + 
Sbjct: 493 DIDKE 497


>gi|329114039|ref|ZP_08242803.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
 gi|326696578|gb|EGE48255.1| Putative type I restriction enzyme HindVIIP M protein [Acetobacter
           pomorum DM001]
          Length = 537

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 107/545 (19%), Positives = 194/545 (35%), Gaps = 67/545 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L  + + +D+  V L    LR +  A E   + +              +    +A 
Sbjct: 41  AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHAELM-----LDDPAAAEDPDEYLAE 95

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129
             F+       S L      +++          I   + +  K +         +     
Sbjct: 96  NIFWVPENARWSHLRDNARSSSIGKLIDEAMLAIEKANPDQLKGVLPKDYGRPAL----D 151

Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           + +L ++    S I +   D     V+  +YE+ +  F     +   +F TP  VV    
Sbjct: 152 SVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 211

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++L                 +YDP CG+GG    +   V   G        +  +GQE  
Sbjct: 212 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 257

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306
             T  +    + +R + +D        I+  +  +  +D     RF Y L+NPPF     
Sbjct: 258 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 307

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                        E  R+  G P   + +  +L H+   L       G A +VL++  + 
Sbjct: 308 -----DWWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSMS 358

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
           +    + E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K +    +RRG++
Sbjct: 359 SN--QNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKKQKGWRDRRGEI 416

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVL 481
             I+A  L   +      RR + D+   +I D Y +           D   F  +   + 
Sbjct: 417 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKDAGTYEDSPGFC-KSATLD 472

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
              +  F+L        E      + S      +  + K + +Q        + +  S+K
Sbjct: 473 EVEQHGFVLTPGRYVGAEEA---EEDSVPFTERFAALEKTLKEQFAQGEELNAKITASLK 529

Query: 542 SNEAK 546
               K
Sbjct: 530 LIVQK 534


>gi|294790580|ref|ZP_06755738.1| type I restriction-modification system, M subunit [Scardovia
           inopinata F0304]
 gi|294458477|gb|EFG26830.1| type I restriction-modification system, M subunit [Scardovia
           inopinata F0304]
          Length = 566

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 108/585 (18%), Positives = 205/585 (35%), Gaps = 79/585 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51
           E    A +L++ +W  A DL G    ++F   IL F   R L    E             
Sbjct: 12  EKNNQAGNLSSQLWAMANDLRGKMDASEFRDYILGFIFYRYLSDRQEHYLESSGTVDIEE 71

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-----LSTLGSTNTR-NNLESYIA 105
             ++ + Y               ++    Y           L  + +   R  + ++   
Sbjct: 72  GESLNDAYTRCSKREGIELYREDLSNELGYAIDPADTWQSLLDKIQNQRIRPEDFQNIFD 131

Query: 106 SFSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD 152
            F  NA          + +F+D + S++    +   +A  L  I +  + ++   D    
Sbjct: 132 HFKRNALLNPNSEKDFRDVFDDINLSNSSLGTSTAARAKALAAIVEKINEVDF-LDEGGR 190

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK------ESPGMI 206
            ++ ++YE+LI +F     + A +F TP +V  +   L+                +    
Sbjct: 191 DILGDVYEYLIEKFAGSSGKKAGEFYTPHEVSKVLAKLVTYAAPDASDESKDVINNEDST 250

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            T+YDPT G+G  L      +       ++      +GQEL   T  +    +L+  +  
Sbjct: 251 FTIYDPTMGSGSLLLTVQKELTGLDHRSRV----HFYGQELNRTTFNLARMNLLMHGVGY 306

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                    ++   TL  D   G           F   ++NPP+ +KW       +    
Sbjct: 307 QSMF-----LRNADTLESDWPDGVDAQGINHPLFFDAVVANPPYSQKW-------DNNAT 354

Query: 318 NGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +  RF     L   S     F+ H    ++      GR AIVL    LF G A   E 
Sbjct: 355 KMKDPRFKEYGKLAPKSAADFAFVEHCLYHMK----LTGRMAIVLPHGVLFRGGA---EG 407

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            IR+ LLE + ++A++ LP++LF+ T IAT + +    KT      V  I+A+  +   +
Sbjct: 408 IIRKALLEKNYLDAVIGLPSNLFYSTGIATVVLVFRKDKT---TDNVLFIDASQHFEKRK 464

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           N    +  + D+    I   Y  R++  K + +       +    +  P  +    ++  
Sbjct: 465 N----QNTLRDEDINLIFQTYKDRKDVDKLAHVASRDEIIHNEYNLNIPRYVDTFEEEEP 520

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
           +   E +     +    +         +   +      +    ++
Sbjct: 521 IDLNEVNQQIADVDKEIERLQTQFESMVADLVETSIDDDENEAKN 565


>gi|284051207|ref|ZP_06381417.1| type I restriction-modification system, M subunit [Arthrospira
           platensis str. Paraca]
          Length = 499

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W   ++L G    + +   +L    L+ +                   
Sbjct: 1   MAVKKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
            +       +   G +F       L  L       + +   I + +   + K + +  DF
Sbjct: 45  YAGKPNPLIIVPQGAAFS-----DLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L ++   F GI L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   +L  P             T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
            P  L  +GQE++  T+++    M +           +  I + +TL+   +       K
Sbjct: 204 APNGLSIYGQEMDNATYSLARMNMFMHN-------HPTAEIWKDNTLAAPYWKEKDGSLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF + ++NPPF  K   +     +     E  RFG G+P   +G   FL+H+   L+   
Sbjct: 257 RFDFAVANPPFSYKSWSNGVDTAR----DEFNRFGYGVPPAKNGDYAFLLHILKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA++L    LF G A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L
Sbjct: 312 ---GKAAVILPHGVLFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVL 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
              +   R G + +I+A+  +     +G K R +      +I+D++ ++    ++SR++ 
Sbjct: 366 DKAEAATRDG-LFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNNQLEIPRYSRLVS 420

Query: 470 YRT 472
              
Sbjct: 421 LEE 423


>gi|153807713|ref|ZP_01960381.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185]
 gi|160886165|ref|ZP_02067168.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483]
 gi|160889103|ref|ZP_02070106.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492]
 gi|149129322|gb|EDM20536.1| hypothetical protein BACCAC_01995 [Bacteroides caccae ATCC 43185]
 gi|156108050|gb|EDO09795.1| hypothetical protein BACOVA_04172 [Bacteroides ovatus ATCC 8483]
 gi|156861570|gb|EDO55001.1| hypothetical protein BACUNI_01524 [Bacteroides uniformis ATCC 8492]
          Length = 497

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 187/492 (38%), Gaps = 66/492 (13%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108
                A   S  D E       + F          +       NL + I           
Sbjct: 59  ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112

Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            D    +   F       +  L  + +   + ++ S  +L     P  +M + YE L+++
Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRKLGNKDYPADLMGDAYEILLKK 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ 
Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIR 221

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ D              GQE      A+    + +             N+ QG TL   
Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269

Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    +F   ++NPPF  +     +    ++K     R   G P  S G   ++ H
Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   +    +G GR A+V+    LF G     E+EIR+ L+E+DLIEA+V L   LF+ T
Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESDLIEAVVTLGDKLFYGT 378

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            ++    I+   K     G++ +I+ + + T  R     + I+ ++   ++  +Y +  +
Sbjct: 379 GLSPCFLIIRRMKQAHHSGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 434

Query: 461 NGKFSRMLDYRT 472
              +SR++  + 
Sbjct: 435 EEDYSRIVTLQE 446


>gi|292491160|ref|YP_003526599.1| type I restriction-modification system, M subunit [Nitrosococcus
           halophilus Nc4]
 gi|291579755|gb|ADE14212.1| type I restriction-modification system, M subunit [Nitrosococcus
           halophilus Nc4]
          Length = 739

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 100/473 (21%), Positives = 191/473 (40%), Gaps = 73/473 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W++ ++L G    + +   +L    ++ +       R+A+        
Sbjct: 1   MAIKKSELYSSLWQSCDELRGGMDASQYKDYVLTLLFVKYMSDKYAGNRNAL-------- 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF       +  L       + + + I   ++  + K + +  DF
Sbjct: 53  --------IVVPEGGSF-----ADMLKLKGDKEIGDKINTIIGRLAEENDLKGVIDVADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L +       L K+   F+ I+L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGRGKEMVDRLSKLLTIFNDIDLRANRAEGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   +L               +T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRIMAKVL------GISRDTRQDQTVYDPTCGSGSLLLKVAD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTG---K 290
            P  L   GQE++  T A+    M++           +  I   +TL+           K
Sbjct: 204 APRGLSIFGQEMDNATSALARMNMILH-------DAPTAEIWHANTLASPYWKHKDGSLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF +  +     ++  H     GRF  G P   +G   FL+H+   L+   
Sbjct: 257 TFDFVVANPPFSQ--KNWTSGLDPAH--DPFGRFELGAPPAKNGDYAFLLHIIKSLKSTG 312

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
            G    A++L    LF G A   E+ IR+ L+   LI+ I+ LP +LF+ T I   + ++
Sbjct: 313 QG----AVILPHGVLFRGGA---EAVIRKNLIRRGLIKGIIGLPPNLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              +   R G V +++A+  +     +G K R +      +I+D++  + +  
Sbjct: 366 DKEQAPTRTG-VFMMDASKGYM---KDGNKNR-LRSQDLHKIVDVFTRQIDRD 413


>gi|253732462|ref|ZP_04866627.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253723852|gb|EES92581.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 579

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 346 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 401 MIHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 507

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 567 NAYLKELGVLKD 578


>gi|157157373|ref|YP_001461440.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157079403|gb|ABV19111.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 569

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 103/600 (17%), Positives = 190/600 (31%), Gaps = 113/600 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L N  WK A+ L  +    ++  V+L    L+ +  A E  +  +            
Sbjct: 9   LNELDNKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQQELTTLFRDVGNPDN 68

Query: 57  ------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--------- 95
                       E+Y       +++E +       F+        TL +           
Sbjct: 69  IYAMSRDDYGSDEEYAQAIQEELEVEDYY-TEKNIFWVPKAARWDTLKNKAMLPTGTVLW 127

Query: 96  ----------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
                             +N    I   +   K I                 +L  +   
Sbjct: 128 VDETTGKDVTLRSVSWLVDNALDEIEKTNPKLKGILNRISQYQLG-----NEVLTGLINT 182

Query: 140 FSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           FS              +     ++ ++YE+ + +F     +    + TP+ +V L   +L
Sbjct: 183 FSDANFSNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML 242

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVPHGQE 246
                            +YDP  G+GGF   +   + +          +    +  +GQE
Sbjct: 243 -----------QPYNGRVYDPAMGSGGFFVSSDRFIEEHAGEKQYNAAEQKRNISVYGQE 291

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
             P T  +    M IR ++ +         +   TL  D     R  + ++NPPF  K  
Sbjct: 292 SNPTTWKLAAMNMAIRGIDFNFGS------KNADTLLDDQHPDLRADFVMANPPFNMKEW 345

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                     K     R+  G P   + +  ++ H+ + L      G  A ++ + S   
Sbjct: 346 -------WNAKLENDVRWKYGTPPQGNANFAWMQHMIHHLAPK---GSMALLLANGSMSS 395

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT-----EERRGK 421
           N      E EIRR L++ DL+E +VALP  LF  T I   +W L+  K+       R+G+
Sbjct: 396 NTNN---EGEIRRNLIKADLVECMVALPGQLFTNTQIPACIWFLTKDKSSGNGKAHRKGE 452

Query: 422 VQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           V  I+A  + +   R      R    +   +I D +   +  K     D   F +    +
Sbjct: 453 VLFIDARKIGFMKDRVL----RDFTREDIARIADTFHKWQADK--EYEDEAGFCFSA-TL 505

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
               +  F+L               +           +   +  Q+      E+ +K ++
Sbjct: 506 EDIQKNDFVLTPGRYVGAAEQ---AEDDEPFAEKMARLTAQLKGQLEESAKLEAQIKANL 562


>gi|183600211|ref|ZP_02961704.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827]
 gi|188022508|gb|EDU60548.1| hypothetical protein PROSTU_03755 [Providencia stuartii ATCC 25827]
          Length = 515

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 93/556 (16%), Positives = 205/556 (36%), Gaps = 62/556 (11%)

Query: 1   MTEF-TGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M +    + +  L   +WK A+ L  +    ++  V+L    L+ +  + E     ++  
Sbjct: 1   MAKKPKETKSEPLEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYEKLKAG 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
              F G++   +S   +A   F+   +   + L +   + N+          I   +   
Sbjct: 61  QGEFAGAD-PEDSDEYLAYNVFFVPEKARWTNLLNNAKQPNIGKLVDDAMEAIEEDNPQL 119

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEV 170
           K +         +     A +L ++      I L    +    V+ +++E+ +  F    
Sbjct: 120 KGVLPKVYARQNL----DATVLGELIDLVGDIALGDAKSRSADVLGHVFEYFLGEFALAE 175

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP+ +V L   +L                 ++DP CG+GG    +   V   
Sbjct: 176 GKQGGQFYTPKSIVSLLVNML-----------EPYEGRIFDPCCGSGGMFVQSEKFVESH 224

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +      +  +GQE    T  +    + IR + S+  +  ++      +   D     
Sbjct: 225 QGNI---DNISIYGQESNQTTWRLAKMNLAIRGINSEQVKWNNEG-----SFLNDAHKDL 276

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           R  + ++NPPF       +       +  +  R+  G P   + +  ++ H    L    
Sbjct: 277 RADFIIANPPFNVSDWSGE-------QLRKDARWQYGAPPAGNANFAWMQHFLYHLSPK- 328

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWI 409
              G+A +VL+   L +    SGE +IR  L+++ ++I+ IV LP  LF  T I   LW 
Sbjct: 329 ---GQAGVVLAKGALTS--KTSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWF 383

Query: 410 LSNRKT-----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENG 462
           +   +      ++R G++  I+A +L   I    K   +++D+  + I D Y +   ++G
Sbjct: 384 MRRDRNNSSVYQDRSGEILFIDARNLGYLINRRTK---VLSDEDIKLISDTYHNWRNKDG 440

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           ++  +  +       + + +   + ++L       L  +           +   +    +
Sbjct: 441 EYEDVAGFCA----SVAIDKVAELDYVLTPGRYVGLADEEDDFDFKERFTALKTEFEAQL 496

Query: 523 MQQIYPYGWAESFVKE 538
            ++          + +
Sbjct: 497 EEEAKLNQAIAENLAK 512


>gi|87161919|ref|YP_494443.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|151221912|ref|YP_001332734.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|87127893|gb|ABD22407.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|150374712|dbj|BAF67972.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
          Length = 579

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 507

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 567 NAYLKELGVLKD 578


>gi|289450588|ref|YP_003474820.1| putative type I restriction-modification system, M subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185135|gb|ADC91560.1| putative type I restriction-modification system, M subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 501

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 96/539 (17%), Positives = 200/539 (37%), Gaps = 59/539 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       IW  A  LWG    +++  VI+    L+ +  A +     +  +  
Sbjct: 1   MADKSKATLGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLKYISTAFDKKYQQLIAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113
              G   + +    +    F+   +     +        +          I + +   K 
Sbjct: 59  ---GDGFENDPDAYLEDNVFFVPEDARWEKIAKAAHEPEIGKVIDEAMRAIEADNKKLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L  +   F+ +++        V+   YE+ I +F  +  +G
Sbjct: 116 VLPKNYASPDLDK----KILGNVVDLFTNMDMSDTEGNRDVLGRTYEYCIAQFAEKEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP  +V+   A+L           P     +YD  CG+GG    +   +     +
Sbjct: 172 GGEFYTPSSIVNTLVAIL----------KPYANCRVYDCCCGSGGMFVQSAKFIQAHSGN 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQE  P+T  + +  + IR L++D             T + DL    +  
Sbjct: 222 RG---SISIYGQEANPDTWKMAIMNLTIRGLDADLGA------YHADTFTNDLHPTLKAD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +D         +  R+  G+P  S+ +  ++ H+ + L       
Sbjct: 273 FILANPPFNYNPWGQED-------LKDDVRWKYGVPPASNANYAWIQHMIHHLAPS---- 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+  +VL++  L       GE EIR+ ++E+DLIE I+A+P  LF+   I   LW ++  
Sbjct: 322 GKIGLVLANGAL--SSQNGGEGEIRKKIIEDDLIEGIIAMPPQLFYSVTIPATLWFITKG 379

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K ++ +     I+A  +   +     K R   ++  +++ D   + +NG           
Sbjct: 380 KKQKGKT--VFIDARKMGHMVDR---KHRDFTEEDIQKLADTIEAFQNG-----TLEDEK 429

Query: 474 GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           G+  +  +    +  ++L       +E      +      +     L  M ++ +    
Sbjct: 430 GFCSVATIQDIAKQDYVLTPGRYVGIEEQEDDGEPFDEKMTRLTSELSDMFERSHELED 488


>gi|218263901|ref|ZP_03477849.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222412|gb|EEC95062.1| hypothetical protein PRABACTJOHN_03539 [Parabacteroides johnsonii
           DSM 18315]
          Length = 497

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 187/492 (38%), Gaps = 66/492 (13%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108
                A   S  D E       + F          +       NL + I           
Sbjct: 59  ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112

Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            D    +   F       +  L  + +   + ++ S  +L     P  +M + YE L+++
Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSRRKLGNKDYPADLMGDAYEILLKK 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ 
Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIR 221

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ D              GQE      A+    + +             N+ QG TL   
Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269

Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    +F   ++NPPF  +     +    ++K     R   G P  S G   ++ H
Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   +    +G GR A+V+    LF G     E+EIR+ L+E+DLIEA+V L   LF+ T
Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESDLIEAVVTLGDKLFYGT 378

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            ++    I+   K     G++ +I+ + + T  R     + I+ ++   ++  +Y +  +
Sbjct: 379 GLSPCFLIIRRMKQAHHSGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 434

Query: 461 NGKFSRMLDYRT 472
              +SR++  + 
Sbjct: 435 EEDYSRIVTLQE 446


>gi|303326058|ref|ZP_07356501.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863974|gb|EFL86905.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. 3_1_syn3]
          Length = 535

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 116/514 (22%), Positives = 195/514 (37%), Gaps = 80/514 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MTE   +   L   +W  A+ L G     DF   +L F  LR L    E   +  +  +Y
Sbjct: 1   MTE--QNQKQLGAVLWSIADTLRGAMDADDFRDYMLAFLFLRYLSDNYEVAAKKELGNEY 58

Query: 60  LA-------------FGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLE--- 101
                          +  +  D+  F K+     +     EY   ++       N E   
Sbjct: 59  PDAGTQPGVTPLRIWYAANQADVPDFEKLMRRRVHYVIKPEYLWDSIAEMARTQNGELLK 118

Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
                  YI   SF    + +F + + +S   +L     E+   L  I K  +   L   
Sbjct: 119 TLQDGFKYIENESFDSTFQGLFSEINLTS--EKLGKRNAERNEKLCDIIKKIAE-GLSSF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F +   + A +F TP ++  + + ++              + +
Sbjct: 176 SSEGDTLGDAYEYLIDKFAAGSGKKAGEFYTPHEISSILSGIVTLDSQDPGTGPKKHLAS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +                I   +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVR-------GRMGAQGIGKIYGQEKNVTTYNLARMNMLLHGVK--- 285

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL+ D              F   ++NPPF  +W   +         GE
Sbjct: 286 --DSEFEIFHGDTLTNDWDMLRETNPAKKPYFDAVVANPPFSYRWNPSEA-------LGE 336

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IRR
Sbjct: 337 DVRFKNYGLAPKSAADFAFLLHGFHYLKRE----GTMAIILPHGVLFRGGA---EERIRR 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LLE+  I+ I+ LP +LF+ T I   + +L   K   +   V  INA++ +      GK
Sbjct: 390 KLLEDGNIDTIIGLPANLFYSTGIPVCVLVLKKCK---KSDDVLFINASEHFEK----GK 442

Query: 440 KRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           ++  ++ +  ++I+D Y  R   + +S+ +    
Sbjct: 443 RQNRLSTEHIKKIVDTYQFRTEEERYSKCVSMEE 476


>gi|331681143|ref|ZP_08381780.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
 gi|331081364|gb|EGI52525.1| putative type I restriction-modification system, M subunit
           [Escherichia coli H299]
          Length = 539

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 104/562 (18%), Positives = 206/562 (36%), Gaps = 78/562 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  +       G ++        
Sbjct: 19  LWDAANQLRGSVESSEYKHVVLSLVFLKFISDKFETRRKKMIA----DGQADFLEMEVFY 74

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +     ++++        S I   +   K    D  FS      
Sbjct: 75  QQDNIFYLPEEARWSFIKQNAKQDDIAVRIDTALSTIEKRNQTLKGALPDNYFSRQNL-- 132

Query: 128 EKAGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +   L  +      IE             + ++  +YE+ + +F +   +G  +F TP+
Sbjct: 133 -ETKKLASLIDTIDNIETLAHETDVETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPK 191

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VV L T +L                 +YDP CG+ G    ++  V            + 
Sbjct: 192 CVVTLLTEML-----------EPFQGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIA 237

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL   T+ +    + IR L ++         +  +T   D     +  Y L+NPPF
Sbjct: 238 LYGQELTATTYKLAKMNLAIRGLSANLGE------RPANTFFSDQHPDLKADYILANPPF 291

Query: 302 GKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                        E +  +  RF G  +P   + +  +++H+ +KL    +  G A  VL
Sbjct: 292 NL------KDWRNEAELTKDPRFAGYRMPPTGNANYGWILHMLSKL----SANGTAGFVL 341

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +      SGE EIR  ++ENDLI+ ++ALP  LF+ T I   LW ++  K  +   
Sbjct: 342 ANGSM--SSNTSGEGEIRAQMIENDLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAK 399

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYR 471
                +G+   I+A +L T I    K    +  +    I + Y +      + +  +   
Sbjct: 400 GYRDRQGETLFIDARNLGTMISRTTK---ELTTEDIATIANTYHAWRSTQEELAARIARG 456

Query: 472 TF---------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
                      G+ ++  +       ++L               +     ++   ++ K 
Sbjct: 457 DSKLEKYEDQAGFCKVATLQDIKDNDYVLTPGRYVGAAEQ---EEDGVAFETKMRELSKT 513

Query: 522 MMQQIYPYGWAESFVKESIKSN 543
           + +Q+      +  +++++++ 
Sbjct: 514 LFEQMKQAEELDRAIRQNLEAL 535


>gi|253687262|ref|YP_003016452.1| type I restriction-modification system, M subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753840|gb|ACT11916.1| type I restriction-modification system, M subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 814

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 102/483 (21%), Positives = 186/483 (38%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF       +  L       + +   I   +   + K++ +  DF
Sbjct: 45  YKGDPYGMIVIPQGTSF-----DDMVALKGDKEIGDKINKIIQKLAAENDLKSVIDVADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
                +L K       L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 DDE-DKLGKGKEMIDRLSKLVGIFEGLDLSGNRAEGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T+YDPTCG+G  L            + +
Sbjct: 159 QFYTPAEVSRILAKVI------GITPETPQDATVYDPTCGSGSLL---------LKVNDE 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               L  +GQE++  T A+    M++         + +  I +G+TLS   +       K
Sbjct: 204 ARRGLSIYGQEMDNATSALARMNMILHN-------NTTAKIWKGNTLSDPQWKEANGRLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K            K     RF  G P   +G   FL+H+   L+   
Sbjct: 257 AFDFAVANPPFSNKN----WTSGLNPKKDPFERFVWGTPPEKNGDYTFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  L++   I+ I+ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EATIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRMLD 469
                  R+G + +I+A+  +     +G K R +      +I+D++   R    +SRM+ 
Sbjct: 366 DKEHAHSRKG-IFMIDASRGFI---KDGNKNR-LRSRDIHRIVDVFNHQRTVPGYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 VSE 423


>gi|15839313|ref|NP_300001.1| type I restriction-modification system [Xylella fastidiosa 9a5c]
 gi|9187844|gb|AAF85760.1|AE004078_12 type I restriction-modification system [Xylella fastidiosa 9a5c]
          Length = 382

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 111/374 (29%), Positives = 176/374 (47%), Gaps = 45/374 (12%)

Query: 1   MTEFTGSAASL---ANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M +     + +   ++FIW  A+  L   +    +  VILPFT+LRRL+  LE T+ AV 
Sbjct: 18  MQKTQQDQSQIKWISDFIWNIADNRLRDVYVRGKYRDVILPFTVLRRLDAVLEGTKDAVL 77

Query: 57  EKYLAFG--GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESYIASFSDN 110
           E+              +    AG +FYN SE++L+ L ++      R++  +Y+  FS +
Sbjct: 78  ERKKFLDVHQVAEQDGALRMAAGQAFYNVSEFTLAKLKASAAGQRLRDDFIAYLDGFSLD 137

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--------------TVPDRVMS 156
            + I   F+F + I +L  + +L  + ++F   E++                 + +  M 
Sbjct: 138 VQEILTKFNFRNQIQKLVDSHVLGYLIEDFLDPEVNLAPLPVKDADGRIKLPALDNHGMG 197

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E LIRRF  + +E A +  TPRDVV L   LL  P     + S     +LYD +CGT
Sbjct: 198 TVFEELIRRFNEDNNEEAGEHFTPRDVVQLMAKLLFLPVAERIESS---TYSLYDGSCGT 254

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG LT A   +      H     +   GQE+  ET+A+C A +L++          ++NI
Sbjct: 255 GGMLTVAEEALHALAQQHGKEVSIHLFGQEISDETYAICKADLLLKG-----EGAEAENI 309

Query: 277 QQG---STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG------ 327
             G   STLS D F  + F + +SNPP+GK W+ D + +  + K     RF         
Sbjct: 310 VGGADKSTLSADQFPSRAFDFMISNPPYGKSWKTDLERMGGK-KEFSDPRFIVSHAGNAE 368

Query: 328 ---LPKISDGSMLF 338
              L + SDG +LF
Sbjct: 369 FKLLTRSSDGQLLF 382


>gi|55822680|ref|YP_141121.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus CNRZ1066]
 gi|55738665|gb|AAV62306.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus CNRZ1066]
          Length = 534

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 122/595 (20%), Positives = 216/595 (36%), Gaps = 94/595 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +         E T
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 52  R--SAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105
                    Y  +       E  +       S+    + + + L     +    LE    
Sbjct: 61  ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F     SD     +FED D  S   +L     ++   +  + K  + +++        +
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T 
Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  + +     
Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
            +    TL +D        F   L NPP+  KW      ++         RF P   L  
Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ +
Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++FF T++ T + IL   +T      V  I+A+  +      GK + I+ D    
Sbjct: 386 IGLPANIFFNTSVPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +IL+ Y SRE+                       + + +     +   + ++   +    
Sbjct: 439 KILNAYKSREDID---------------------KFAHLASFEEIVENDYNLNIPRYVDT 477

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564
            +   ++ L  ++ +I            S+     +           + AF+ AF
Sbjct: 478 FEEEEVEPLTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEADEELKAFVKAF 532


>gi|71904274|ref|YP_281077.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS6180]
 gi|306826650|ref|ZP_07459954.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
 gi|71803369|gb|AAX72722.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS6180]
 gi|304431177|gb|EFM34182.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus pyogenes ATCC 10782]
          Length = 526

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 120/502 (23%), Positives = 196/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        E++ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLFAVCDNLEEHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+    +  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTDAQKIFENAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGWED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +  ++   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D   +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|331017721|gb|EGH97777.1| N-6 DNA methylase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 533

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 115/559 (20%), Positives = 197/559 (35%), Gaps = 71/559 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------PTRSA 54
           ++      +W  A  L G     ++   +L    L+ +    +            P+   
Sbjct: 2   TSEEFKKTLWDTANKLRGSVSAAEYKYPVLGLVFLKYVSDLYDTQAGVIQDRLADPSSEL 61

Query: 55  VRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             E  +  A   +    +         F+  +E    TL  +    N    +      A 
Sbjct: 62  YIEDAELRAESAAIFVEDKTFFTQDNVFWVPAEAKFETLLQSAAAANFAQLLDK----AM 117

Query: 113 AIFEDFDFS------STIARLE-KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIR 164
            + E  + S         +RLE + G L ++ +  + ++  P       V   +YE+ + 
Sbjct: 118 GLIESENLSLKGVLYREFSRLELEPGKLGELFELIAKLKFDPKEHGSRDVFGEVYEYFLG 177

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F       A +F TP+ +V L   +L                T+YDP CG+GG    + 
Sbjct: 178 QFALNEGARAGEFYTPKSLVSLLVEILA-----------PFKGTIYDPACGSGGMFVQSA 226

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                          L  +GQE   ET  +C+  + +  L+ +  +        GST + 
Sbjct: 227 KFKDAHAKQLGSKGDLPIYGQEKMAETRRLCLMNLAVHGLDGNIGQT------YGSTFTN 280

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R  Y L+NPPF     + +       K     R+  G+P   + +  +L H+  
Sbjct: 281 DQHKTLRADYILANPPFNISDWEGE-------KLKGDPRWAHGIPPKGNANYAWLQHILA 333

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           +L       GRA +VL++  +      SGE +IR+ ++  D++E +VALP  LF  T I 
Sbjct: 334 RLSSR----GRAGVVLANGSMST--QQSGEDKIRQSMVIKDVVECMVALPGQLFSNTQIP 387

Query: 405 TYLWILSNRKTEERRGK------VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             LW LS  K     GK      +  I+A     +     +K+    +D    I   Y  
Sbjct: 388 ACLWFLSKDKRIGPNGKTDRSSQILFIDARK--ATSGRISRKQVEFTEDDMEGIAQTYHR 445

Query: 459 RENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             N  FS      D   F Y         +  FIL        E   +  +   L     
Sbjct: 446 WRNTVFSDGEGYEDIPGFCYSA-SFEDVQKHGFILTPGRYVGAE---SVEEDDQLFSDKL 501

Query: 516 LDILKPMMQQIYPYGWAES 534
             +++ + +QI      E 
Sbjct: 502 NHLIEQLGEQIAERNAIEK 520


>gi|255690135|ref|ZP_05413810.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260624419|gb|EEX47290.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 497

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 105/492 (21%), Positives = 187/492 (38%), Gaps = 66/492 (13%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108
                A   S  D E       + F          +       NL + I           
Sbjct: 59  ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112

Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            D    +   F       +  L  + +   + ++ S  +L     P  +M + YE L+++
Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRKLGNKDYPADLMGDAYEILLKK 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ 
Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETVYDPACGSGGMLIEAIR 221

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ D              GQE      A+    + +             N+ QG TL   
Sbjct: 222 YMHD-----DSLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269

Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    +F   ++NPPF  +     +    ++K     R   G P  S G   ++ H
Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   +    +G GR A+V+    LF G     E+EIR+ L+E++LIEA+V L   LF+ T
Sbjct: 325 MICSM---SSGKGRMAVVMPQGILFRGNQ---EAEIRKQLVESNLIEAVVTLGDKLFYGT 378

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            ++    I+   K     G++ +I+ + + T  R     + I+ ++   ++  +Y +  +
Sbjct: 379 GLSPCFLIIRRMKQAHHSGRILMIDGSQILTQKRA----QNILEENDIDRLYSLYQNYSD 434

Query: 461 NGKFSRMLDYRT 472
              +SR++  + 
Sbjct: 435 EEDYSRIVTLQE 446


>gi|260776279|ref|ZP_05885174.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607502|gb|EEX33767.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
          Length = 519

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 106/524 (20%), Positives = 199/524 (37%), Gaps = 68/524 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK------YLAFGGSNID 68
           +W  A  L G+    DF   IL     + L   L      +  +        A     I+
Sbjct: 13  LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGITFVAAADDKELIN 72

Query: 69  LESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 V    ++   +   S+L           + L+  +A    +  A     DF+  
Sbjct: 73  DLREECVENLGYFIAPKQLFSSLAGRGKKQEFIVDELDRTLADIEQSTTAADSADDFNGL 132

Query: 124 IARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
              L+            +  L+ ++  +   I+ H +     ++ + YE+LI +F S   
Sbjct: 133 FEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASGAG 192

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   L+            G ++++YDPTCG+G  L      V    
Sbjct: 193 KKAGEFYTPQQVSKILAKLVSLD---------GNVKSVYDPTCGSGSLLLRVAREVGSHN 243

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       GQE  P T+ +    ML+  +  D       +I+   TL   +   +R
Sbjct: 244 LE--------FCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLEQR 290

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPPF   W  ++  +  E            L   S     F++H+ ++L    N
Sbjct: 291 FDAVVANPPFSANWSANELHLNSERFADY-----GKLAPKSKADFAFVLHMIHQL----N 341

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +FF T+I T + + 
Sbjct: 342 ETGTLAVVVPHGILFRGAA---EGHIRKHLIEKKNYLDAVIGLPAGIFFGTSIPTCILVF 398

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469
             +K  +    V  I+A++ +      GK +  + ++   +I++ Y  RE+ + F+ +  
Sbjct: 399 --KKNRKNDDNVLFIDASNHFEK----GKAQNFMRNEDVERIVEAYRKRESVEKFAHVAK 452

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                     +  P    ++        ++ D   + L+ L   
Sbjct: 453 LTEVEENDYNLNIP---RYVDTFEEEEPVDLDAVAQDLASLETK 493


>gi|260768976|ref|ZP_05877910.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio furnissii CIP 102972]
 gi|260617006|gb|EEX42191.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio furnissii CIP 102972]
          Length = 514

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 99/475 (20%), Positives = 180/475 (37%), Gaps = 68/475 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G+    DF   IL     + L   L      +  +         D +  + 
Sbjct: 13  LWNIANTLRGNMSADDFRDYILGLIFYKYLSDKLNRYCDELLAEDGVTFVGAADDQELIH 72

Query: 75  V------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-------DFDFS 121
                      ++   +   S+L +   +      I         I +         DF+
Sbjct: 73  ELREECVENLGYFIAPKQLFSSLAARGQKQEFI--IDELDRVLADIEQSTTTADSADDFN 130

Query: 122 STIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                L+            +  L+ ++  +   I+ H +     ++ + YE+LI +F S 
Sbjct: 131 GLFEELDLNSSKLGKNPDARNKLISQVLVHLDNIDFHLENTEIDLLGDAYEYLIGQFASG 190

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  +   L+            G ++++YDPTCG+G  L      V  
Sbjct: 191 AGKKAGEFYTPQQVSKILAKLVSLD---------GNVKSVYDPTCGSGSLLLRVAREVGS 241

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                         GQE  P T+ +    ML+  +  D       +I+   TL   +   
Sbjct: 242 HNLE--------FCGQEQNPSTYNLARMNMLMHGVRYDK-----FDIKNDDTLEHPMHLE 288

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           KRF   ++NPPF   W  ++  +  E            L   +     F++H+ ++L   
Sbjct: 289 KRFDAVVANPPFSANWSANELHLNSERFADY-----GKLAPKTKADFAFVLHMIHQL--- 340

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLW 408
            N  G  A+V+    LF G A   E  IR+ L+E  + ++A++ LP  +FF T I T + 
Sbjct: 341 -NETGTLAVVVPHGILFRGAA---EGHIRQHLIEKKNYLDAVIGLPAGIFFGTGIPTCIL 396

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +   +K  +    V  I+A++ +      GK +  + D    +I++ Y  RE+ +
Sbjct: 397 VF--KKNRKHADNVLFIDASNHFEK----GKAQNFMRDADVERIVEAYSKRESVE 445


>gi|296110699|ref|YP_003621080.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154]
 gi|295832230|gb|ADG40111.1| hypothetical protein LKI_02840 [Leuconostoc kimchii IMSNU 11154]
          Length = 514

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 103/550 (18%), Positives = 205/550 (37%), Gaps = 59/550 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-----CALEPTRS-- 53
           MTE T    +L   +W +A  L G    +++   +L     R L        ++ T    
Sbjct: 1   MTENTSK--TLEQALWNSANVLRGKMDASEYKNYLLGLIFYRFLSHKTMAAVIDATGEIG 58

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFS 108
                Y  +     D           F    +    +L +         ++L++ + +  
Sbjct: 59  DPIAIYKQYWQDQRDDIIAELYTANGFIIQPDELFDSLVTRIQNHQFQVSDLKTALFNLE 118

Query: 109 DNAKAIFEDFDFSSTIARLE-KAGLLYK-----ICKNFSGIELHPDTVPDRVMSNIYEHL 162
            + K    + DF    + ++  +  L K     +    + ++         V+ + YE+L
Sbjct: 119 QSVKGHKSEDDFEGLFSDIDLDSNRLGKNPSQVMNDTITALKDIDFDSDRDVLGDAYEYL 178

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  F     + A +F TPR V  +   ++    +         IR++YDP  G+G  L  
Sbjct: 179 ISEFAMSAGKKAGEFYTPRTVSEIIARIVAKGHED----GDNQIRSVYDPAMGSGSLLLT 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                            +  HGQEL   T  +    +++  +  +       +++ G TL
Sbjct: 235 VA-------GQVTGNKTIAYHGQELNTTTFNLARMNLMLHGVSFEDI-----HVRNGDTL 282

Query: 283 SKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             D       +F   + NPP+   W  D+  + +             L   S     FL+
Sbjct: 283 DNDWPAQEPYQFDAVVMNPPYSAHWNNDESRLSEPRFRDY-----GKLAPKSKADYAFLL 337

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G   IVL    LF G A   E +IR+ L+++++I+A++ LP ++F+ 
Sbjct: 338 HGLYHLKPS----GTMGIVLPHGVLFRGAA---EGKIRQQLIDSNMIDAVIGLPANIFYS 390

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   K  +    V  I+A + +T     GK + +++++   +I+  Y  R+
Sbjct: 391 TSIPTVILILKKNKATK---DVLFIDAINQFTK----GKNQNVLSEENIDKIVSTYDKRQ 443

Query: 461 NGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           + + ++ +            +  P R     ++     LEA     K   +        +
Sbjct: 444 DVEKYAHVALIDEIKENDYNLNIP-RYVDTFEEEEPIDLEAVRQQLKQDDIEIQKLEKEI 502

Query: 520 KPMMQQIYPY 529
           +  ++++   
Sbjct: 503 EETLKELGVK 512


>gi|310780626|ref|YP_003968957.1| type I restriction-modification system, M subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309749949|gb|ADO84609.1| type I restriction-modification system, M subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 513

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 117/544 (21%), Positives = 210/544 (38%), Gaps = 70/544 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----- 58
            +     L   +W  A +L G+    +F   IL F   + L   +E       E      
Sbjct: 1   MSEHKQELEKRLWAIANELRGNMGADEFRDYILGFIFFKFLSEKMENFAKKELEVEGISF 60

Query: 59  ---------YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNLESYI 104
                            ++   +     + F+N      S   +        +   ES +
Sbjct: 61  ADAVKDPEIMEDLKEEAMESLGYFIEPRHLFHNIAARARSREMIIEDLIKAMKEVEESAL 120

Query: 105 ASFSD-NAKAIFEDFDFSST--IARLEKAGLL-YKICKNFSGIELHPDTVPDRVMSNIYE 160
              S+ +   +FED D +ST     +E+   L  ++ K+   I    +     V+ + YE
Sbjct: 121 GHESEQDFTGLFEDVDLTSTKLGRTVEQKNRLISEVIKHLDEINFKFEDTEMDVLGDAYE 180

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  F S   + A +F TP+ V  +   L+    +         I+T+YDPTCG+G  L
Sbjct: 181 YLIGEFASGAGKKAGEFYTPQQVSKILAKLVTLGKE--------KIKTVYDPTCGSGSLL 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                         +   +   +GQEL   T+ +    M++       ++     I+QG 
Sbjct: 233 LRVS----------RESDVSFFYGQELNTTTYNLARMNMILH-----DKKFSDFEIEQGD 277

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLF 338
           TL       KRF   ++NPPF  KW  ++  +  E       RF     L   +     F
Sbjct: 278 TLEDPHHLDKRFEAVVANPPFSAKWSANQTFLSDE-------RFSAYGKLAPKTKADFAF 330

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDL 397
           + H+ ++L    +  G  A VL    LF G A   E  IR++L+E  + ++A++ LP ++
Sbjct: 331 VQHMIHQL----DENGTMATVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANI 383

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + +   +K  E    V  I+A++ +   +N    +  + D+   +I+D Y 
Sbjct: 384 FYGTSIPTCVLVF--KKCRENPENVLFIDASNYFEKAKN----QNYLRDEDVERIIDTYR 437

Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +R   + FS +            +  P  +    ++  +   E     + L     S   
Sbjct: 438 NRTEIEKFSHVATMAEIKENDYNLNIPRYVDTFEEEEPVDLAEVAKAIKALDKDILSIDE 497

Query: 517 DILK 520
           +I K
Sbjct: 498 EIKK 501


>gi|55820777|ref|YP_139219.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMG 18311]
 gi|55736762|gb|AAV60404.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMG 18311]
          Length = 534

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/595 (20%), Positives = 216/595 (36%), Gaps = 94/595 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPT 51
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +         E T
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 52  R--SAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105
                    Y  +       E  +       S+    + + + L     +    LE    
Sbjct: 61  ESLDEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F     SD     +FED D  S   +L     ++   +  + K  + +++        +
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T 
Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  + +     
Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
            +    TL +D        F   L NPP+  KW      ++         RF P   L  
Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ +
Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    
Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +IL+ Y SRE+                       + + +     +   + ++   +    
Sbjct: 439 KILNAYKSREDID---------------------KFAHLASFEEIVENDYNLNIPRYVDT 477

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564
            +   ++ L  ++ +I            S+     +           + AF+ AF
Sbjct: 478 FEEEEVEPLTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEADEELKAFVKAF 532


>gi|298693765|gb|ADI96987.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus subsp. aureus ED133]
          Length = 518

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADGEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|19746827|ref|NP_607963.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes
           MGAS8232]
 gi|19749065|gb|AAL98462.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes MGAS8232]
          Length = 526

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/502 (23%), Positives = 197/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        +++ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLDQHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+   ++  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTDAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            FS      ++ + +FED D  S   +L     ++   +  + K  + I    + V    
Sbjct: 118 GFSDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIGF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +  ++   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D   +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|257424551|ref|ZP_05600980.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427217|ref|ZP_05603619.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257429853|ref|ZP_05606240.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257432557|ref|ZP_05608920.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257435461|ref|ZP_05611512.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903019|ref|ZP_06310912.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282907408|ref|ZP_06315256.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282912639|ref|ZP_06320435.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913267|ref|ZP_06321059.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282922895|ref|ZP_06330585.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283959867|ref|ZP_06377308.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293498314|ref|ZP_06666168.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509255|ref|ZP_06667972.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293550522|ref|ZP_06673194.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295426965|ref|ZP_06819604.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|257273569|gb|EEV05671.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257276848|gb|EEV08299.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257280334|gb|EEV10921.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257283436|gb|EEV13568.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257286057|gb|EEV16173.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282315116|gb|EFB45502.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282323367|gb|EFB53686.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324335|gb|EFB54651.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282330307|gb|EFB59828.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282597478|gb|EFC02437.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283789459|gb|EFC28286.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290919569|gb|EFD96645.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291097245|gb|EFE27503.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467894|gb|EFF10403.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|295129417|gb|EFG59044.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
          Length = 525

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 16  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 75

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 76  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 134

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 135 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 194

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 195 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 246

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                            +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 247 RVGKEAK----------VYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 291

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 292 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 346

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 347 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 399

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 400 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 453

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 454 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 512

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 513 NAYLKELGVLKD 524


>gi|158520268|ref|YP_001528138.1| type I restriction-modification system, M subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158509094|gb|ABW66061.1| type I restriction-modification system, M subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 808

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/474 (19%), Positives = 177/474 (37%), Gaps = 60/474 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + ++L G    + +   +L    ++ +                 + 
Sbjct: 1   MALKKSELYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISD--------------KYA 46

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSS 122
            S+          G SF +  +    +         +    I S S  A++ F DF+  +
Sbjct: 47  ASDDYAPPVTIPRGASFQDMVKLKGKSDIGDKINTQIIQPLIDSNSRLARSDFPDFNDPN 106

Query: 123 TIARLEK-AGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +   +     L  +   F   EL         D ++ + YE+L+R F  E  +    F 
Sbjct: 107 KLGEGKAMVDRLTNLISIFQKPELDFSKNRADHDDILGDAYEYLMRHFAQESGKSKGQFY 166

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  +   ++                T YDPTCG+G  L              +   
Sbjct: 167 TPSEVSRIIAKVIGISPQKAV-----ASTTAYDPTCGSGSLL---------LKVAAEAGK 212

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            +   GQE +  T  +    M++           + NI  G+TL+   F      + + +
Sbjct: 213 HITLEGQEKDVTTAGLARMNMILH-------DFPTANILNGNTLASPKFKDGEKLRTYDF 265

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K            +N    RF  G+P    G   +L+H+   ++      G
Sbjct: 266 VVANPPFSDKTWSTGLTS----ENDPYQRFEWGVPPAKQGDYAYLLHIIRSMKST----G 317

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA +L    LF G A   E+ IR+ L+ +  ++ I+ LP +LF+ T I   + +L    
Sbjct: 318 KAACILPHGVLFRGNA---ENVIRKRLVRSGYLKGIIGLPANLFYGTGIPACILVLDKEN 374

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
              R+G + +I+A+  +     +G K R + +    +I+D +  +        +
Sbjct: 375 ATARKG-IFMIDASRGFI---KDGNKNR-LREQDIHKIVDTFRKQAETPRYARM 423


>gi|227533895|ref|ZP_03963944.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188457|gb|EEI68524.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 532

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/492 (20%), Positives = 194/492 (39%), Gaps = 73/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M + T    +L   +W +A+ L      +++   +L     + L           LE   
Sbjct: 1   MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 53  SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107
           + + +       A+   ++  +    V+    Y+     + + L         +  +   
Sbjct: 59  TDLDKAQQIYTDAYDDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116

Query: 108 SDNAKAIFEDFDFSSTI--------ARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
           S + + I +  +F S +         +L     ++  ++  + K  S ++L      + +
Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYSRKLGATPQKQNQVISDVMKQISTLDLVGQN-TNDI 175

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F S+  + A +F TP+ V  L T + +   + +         T+YDPT 
Sbjct: 176 LGDAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDPTM 229

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +   GQEL   T+ +    M++  +  +     ++
Sbjct: 230 GSGSLLLNARRY-------SNERLSINYFGQELNTSTYNLARMNMILHGVPIN-----NQ 277

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKI 331
           ++    TL +D        F   + NPP+   W   K             RF   GL   
Sbjct: 278 HLHNADTLDQDWPIEEPTNFDAVVMNPPYSAHWRPSKGTEN-------DPRFVSYGLAPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLEN  I+ ++
Sbjct: 331 SKADFAFLLHGYYHLKDT----GVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDTVI 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + +L   K       V  I+A+  +   +N    +  +  D  ++
Sbjct: 384 GLPANIFFNTSIPTTVTVL---KKSRTTRDVLFIDASKEFEKAKN----QNHLTGDNIQK 436

Query: 452 ILDIYVSRENGK 463
           IL+ Y++R++  
Sbjct: 437 ILETYINRKDVD 448


>gi|253735165|ref|ZP_04869330.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253726829|gb|EES95558.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 518

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   S            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYSDALAGEDIAYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|89890210|ref|ZP_01201720.1| type I restriction-modification system methyltransferase
           [Flavobacteria bacterium BBFL7]
 gi|89517125|gb|EAS19782.1| type I restriction-modification system methyltransferase
           [Flavobacteria bacterium BBFL7]
          Length = 551

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 101/503 (20%), Positives = 187/503 (37%), Gaps = 83/503 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E       L   +W  A DL G+    DF   IL F   + L   +E   + + +   
Sbjct: 1   MSEE-EKQQILKQTLWNIANDLRGNMDADDFRDYILGFIFYKYLSRKMELYANVILQPDG 59

Query: 58  ------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
                 +  +     ++   +  +    ++       S L       N  ++I     N 
Sbjct: 60  LDYGTVEQHSQADELLEAIRYEALDKLGYFLKPSELFSELAKRGNSGNKNNFILGDLANV 119

Query: 112 KAIFED--------FDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVP 151
               E          DF +    L+            K  L+ K+  +  GI+   +   
Sbjct: 120 LTSIEQSTMGSESEDDFGNLFEDLDLTSSKLGKTEDAKNELIVKVLTHLEGIDFDLENSD 179

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F S   + A +F TP+ V  +   L+              ++++YD
Sbjct: 180 SDILGDAYEYLIGQFASGAGKKAGEFYTPQQVSKILAQLVTTNK--------TKLKSVYD 231

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      V + G           +GQE  P T+ +C   M++  +       
Sbjct: 232 PTCGSGSLLLRVAKEVKEVGE---------FYGQESNPTTYNLCRMNMIMHDVH-----Y 277

Query: 272 LSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              +I    TL         KRF   ++NPPF   W      +  +  +         L 
Sbjct: 278 KRFDIYNEDTLVNPSPNHLDKRFEAIVANPPFSANWSASPLFMSDDRFSDY-----GKLA 332

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIE 388
             S     F+ H+ ++L    +  G  A VL    LF G A   E  IR++L+E  + ++
Sbjct: 333 PKSKADFAFVQHMIHQL----DDNGTMATVLPHGVLFRGAA---EGHIRKFLIEEKNYLD 385

Query: 389 AIVALPTDLFFRTNIATYLWILSN------------RKTEERRGKVQLINATDLWTSIRN 436
           A++ LP ++F+ T+I T + +L               K  +R   +  I+A+  +  ++ 
Sbjct: 386 AVIGLPANIFYGTSIPTCILVLKKDRACHTEPVEVHDKKLKREETILFIDASAHFEKVKT 445

Query: 437 EGKKRRIINDDQRRQILDIYVSR 459
               + ++  +   +I+  Y + 
Sbjct: 446 ----QNVLLPEHIDKIITTYRNY 464


>gi|21282121|ref|NP_645209.1| type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300911069|ref|ZP_07128518.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|21203557|dbj|BAB94257.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300887248|gb|EFK82444.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 518

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  + D Q  +I++ Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQEDYVLFIDASNDFEK----GKNQNHLTDAQVERIINTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|325982846|ref|YP_004295248.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
 gi|325532365|gb|ADZ27086.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
          Length = 549

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/575 (16%), Positives = 184/575 (32%), Gaps = 88/575 (15%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +        L   +WK A  L  +    ++  V+L    L+ +  A E       EK 
Sbjct: 1   MAKTKAIKTEPLEKQLWKAACKLQKNIDAAEYKHVVLGLMFLKYISDAFEELHDR-LEKG 59

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAK 112
                     +     A   F+  +E     L +   + ++          I   + + K
Sbjct: 60  EGDLVGADPEDKDEYRAENVFFVPAESRWPHLVAHARQPDIGTHVDAAMDAIEKENPSLK 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +        L ++      I L         V+ +++E+ +  F     
Sbjct: 120 GVLPKVYARQNL----DPTSLGELIDLIGNIALGDAKARSQDVLGHVFEYFLGEFALAEG 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR +V L   +L                 ++DP CG+GG    +   V +  
Sbjct: 176 KQGGQFYTPRSIVELLVNML-----------EPYQGRVFDPCCGSGGMFVQSEKFVEEHQ 224

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +    + IR ++S   +  ++      +   D     +
Sbjct: 225 GRID---DISIYGQESNQTTWRLAKMNLAIRGIDSSQVKWNNEG-----SFLNDAHKDLK 276

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF       +       +     R+  G P   + +  +L H    L     
Sbjct: 277 ADFIIANPPFNVSDWSGE-------QLRGDARWQYGTPPPGNANFAWLQHFIYHLSPT-- 327

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G A +VL+   L +    SGE +IR+ L+ + +LI+ IV LP  LF  T I   LW L
Sbjct: 328 --GIAGVVLAKGALTS--KTSGEGDIRKRLITDGNLIDCIVNLPAKLFLNTQIPAALWFL 383

Query: 411 SNRKT--------------------------------EERRGKVQLINATDLWTSIRNEG 438
           +  +                                   R  ++  I+A +L   I    
Sbjct: 384 NRNRAGMDIGGHAKTIVGANNHLPLQNPPQQNPPQYHHPRTHEILFIDARNLGHLINRRT 443

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-----FGYRR-IKVLRPLRMSFILDK 492
           K    ++ D  +QI + Y +  N                 G+   + V R   + ++L  
Sbjct: 444 K---ELSHDDIQQIANTYHAWRNPAVIPAQTGIQPYEDIKGFCASVPVERVAELDYVLTP 500

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                L  +           +   +    + +++ 
Sbjct: 501 GRYVGLPDEEDDFNFPERFAALKAEFEAQLQEEVA 535


>gi|254438740|ref|ZP_05052234.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307]
 gi|198254186|gb|EDY78500.1| N-6 DNA Methylase family [Octadecabacter antarcticus 307]
          Length = 911

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 191/485 (39%), Gaps = 76/485 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + + + +W + + L G    + +   +L    ++ +                   
Sbjct: 1   MAVKKSEIYSSLWASCDALRGGMDASQYKDYVLVLLFVKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
            +           G SF       +  L       + +   I+  ++  + K + +  DF
Sbjct: 45  YAGDPDGLIEIPEGGSF-----ADMVALKGDKEIGDKINVIISRLAEANDLKGVIDVADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    +L         L  +   F+  EL   +     D ++ + YE+L+R F +E  + 
Sbjct: 100 NEE-EKLGTGKEMVDRLSNLIAIFNRPELDFRNNRAEGDDILGDAYEYLMRHFATEAGKS 158

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP +V  +    +          S    +T+YDPTCG+G  L  A +        
Sbjct: 159 KGQFYTPAEVSRIMAKAI------GISASNRPDQTIYDPTCGSGSLLLKARD-------- 204

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
            + P  +  +GQE +  T A+    M++         D +  I + +TL+   F      
Sbjct: 205 -EAPAGITIYGQEKDVATRALAKMNMVLH-------DDPTAEIWRDNTLASPHFKNDTGG 256

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            K F + ++NPPF  K      +   +  N +  RFG G+P   +G   +L+H+   L+ 
Sbjct: 257 LKTFDFVVANPPFSDK----AWSTGLDPVNDQYDRFGYGVPPAKNGDYAYLLHIVASLKT 312

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ A++L    LF G A   ESEIR  ++    I+ I+ LP +LF+ T I   + 
Sbjct: 313 T----GKGAVILPHGVLFRGNA---ESEIREKIIRKGYIKGIIGLPANLFYGTGIPACII 365

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           ++     + R G + +++A+  +     +G K R +      +I+D +  +    K+SRM
Sbjct: 366 VIDKENAQARTG-IFMVDASKGFV---KDGNKNR-LRSQDLHKIVDAFTKQIEIDKYSRM 420

Query: 468 LDYRT 472
           +    
Sbjct: 421 VPLAE 425


>gi|312870866|ref|ZP_07730971.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 3008A-a]
 gi|311093556|gb|EFQ51895.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 3008A-a]
          Length = 502

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 198/540 (36%), Gaps = 60/540 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  +A+     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLAK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D     +       T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L       GE EIR+ ++E+DLIE I+++P+ LF+   ++  LW ++ 
Sbjct: 322 NGKIGLVLANGAL--SSQKCGEGEIRQKIIEDDLIEGIISMPSKLFYSVTLSVTLWFITK 379

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            K ++ +     I+A  +   +       R  +++  +++   +   +NG          
Sbjct: 380 GKKQKGKT--LFIDARHMGHMVDQS---HRDFSEEDIQKLTTTFEKFQNG-----TLENV 429

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+  +       +  +IL       +E      +      +     L  M ++ +    
Sbjct: 430 KGFCYVATTKDIAKQDYILTPGRYVGIEDQEDDGEPFDEKMTRLTSELSEMFKKSHKLED 489


>gi|283469726|emb|CAQ48937.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 518

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|139474406|ref|YP_001129122.1| type I restriction-modification system M protein [Streptococcus
           pyogenes str. Manfredo]
 gi|134272653|emb|CAM30920.1| type I restriction-modification system M protein [Streptococcus
           pyogenes str. Manfredo]
          Length = 526

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/502 (24%), Positives = 196/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+    +  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTEAQKIFEDAYQDQGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +  ++   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D   +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|284108344|ref|ZP_06386408.1| Type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283829905|gb|EFC34191.1| Type I restriction-modification system, M subunit [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 545

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 123/560 (21%), Positives = 212/560 (37%), Gaps = 67/560 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------R 56
               +  SL ++IW  A  + G      +   ILP    +RL    +   + +      R
Sbjct: 17  NTEANDKSLESWIWDAACSIRGAKDAPKYKDYILPLIFAKRLCDVFDDELNRIATEVGSR 76

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLESY---IA 105
           EK      ++    +  K A   FY            +S+    S      + ++   IA
Sbjct: 77  EKAFQLVVADWRRVADKKKAMVRFYLPLMPKDTEQPVWSVIRKLSDKIGEGVTTHMREIA 136

Query: 106 SFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             +   K I +  DF++T    R      L  + +  S   L    V   ++   YE+LI
Sbjct: 137 RENPLLKGIIDRVDFNATTHGQRDLDDDRLSNLIEAISTKRLGLADVEADIIGKSYEYLI 196

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F     + A +F TP +V  +   +L          +P     +YDPTCG+GG L   
Sbjct: 197 RKFAEGSGQSAGEFYTPGEVGEIMARVL----------APDPGMEIYDPTCGSGGLLIKC 246

Query: 224 MNHVADCGSHHKIPPIL----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +       K            GQE  PET A+    M+I  +E          I+ G
Sbjct: 247 ELAMEAKVKAAKKTKDAPLPLKLFGQEYVPETWAMANMNMIIHDMEG--------QIEIG 298

Query: 280 STLSKDLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKI 331
            T     F  ++      F   ++NP + +        +E ++ N EL RF  G G P  
Sbjct: 299 DTFKNPRFRAEKSGKLRTFDRVVANPMWNQD-----SYIEADYDNDELDRFPAGAGFPGK 353

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIE 388
           S     ++ H+   L       GRAA+VL +     G   +G   E  +R+W ++ DLIE
Sbjct: 354 SSADWGWVQHMHASLNDK----GRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDQDLIE 409

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +++ LP +LF+ T     +  L+  K   R+GK+ L+NA+ ++      G  +  I  + 
Sbjct: 410 SVLYLPENLFYNTTAPGIVLFLNKAKPRARQGKIFLVNASQVFEK----GDPKNFIPPEG 465

Query: 449 RRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I  I +  +  +  SR++ +         +  P R     +      L   +     
Sbjct: 466 IARIAGILIKWKEEEKLSRIVAHAELKKNDYNI-SPSRYIHTGEAEAYRPLAEIVADLDA 524

Query: 508 SPLHQSFWLDILKPMMQQIY 527
                      L+ ++++I 
Sbjct: 525 IEEEAKETDRALREILERIG 544


>gi|15675719|ref|NP_269893.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71911436|ref|YP_282986.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS5005]
 gi|13622937|gb|AAK34614.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes M1 GAS]
 gi|71854218|gb|AAZ52241.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS5005]
          Length = 526

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/502 (24%), Positives = 197/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+    +  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTEAQKIFEDAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +  ++   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPINFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D+  +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDNHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|241763494|ref|ZP_04761547.1| N-6 DNA methylase [Acidovorax delafieldii 2AN]
 gi|241367335|gb|EER61666.1| N-6 DNA methylase [Acidovorax delafieldii 2AN]
          Length = 516

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/538 (17%), Positives = 191/538 (35%), Gaps = 62/538 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-------EKYL 60
              +   +W  A+ L  +    ++  ++L    ++ +       R+ +        ++Y 
Sbjct: 2   LDDIKKTLWATADKLRANMDAAEYKHLVLGLIFVKYISDTFAARRAELTARLTNPDDEYF 61

Query: 61  AFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRNNLES-------YIASFS 108
                  D+E+ ++   Y      F+         L +   + ++          I + +
Sbjct: 62  YGDADPADIEAELEDRDYYKEVNVFWVPEGARWEALRNAAKQPDIGKRIDDALTLIEAEN 121

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFG 167
              K I +     + +      G L ++    S I    D  +   V+  +YE+ +  F 
Sbjct: 122 PKLKGILDKRYARAQLPD----GKLGELVDLVSTIGFGEDAAIARDVLGQVYEYFLGMFA 177

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +    F TP  +V    A+L   +             +YDP CG+GG    +   +
Sbjct: 178 SAEGKRGGQFYTPASIVKTLVAILSPHEG-----------KVYDPCCGSGGMFVQSEKFI 226

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G        +  +GQE  P T  +    + IR ++ +  R+ +       T +++  
Sbjct: 227 EAHG---GKLGDVSIYGQEANPTTWRLAAMNLAIRGIDYNLGREPA------DTFTRNQH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R  Y L+NPPF                     R+  G P   + +  +L H+ + L+
Sbjct: 278 PDLRADYILANPPFNIS-------DWWHGSLEGDPRWEFGDPPHGNANYAWLQHMLHHLK 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GRA IVL++  + +    + E  IR  +++ D++E +VALP  LFF T I   L
Sbjct: 331 PT----GRAGIVLANGSMSSS--QNNEGVIRAAMVDADVVEVMVALPGQLFFNTQIPACL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W L+ +K    +G+V  I+A      I      +  + D+   +I  +  +      +  
Sbjct: 385 WFLAKQKAR--KGEVLFIDARKQGRMISRV---QAELTDETIARIEAVVAAWRGEPGAGS 439

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +      R + +    +   +L        E      +          + L   M +
Sbjct: 440 YEDVKGFCRSVPLAEIAQHGHVLTPGRYVGAEEVEDDDEAFADKMQKLTEKLGEQMAK 497


>gi|49482660|ref|YP_039884.1| type I restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|297588824|ref|ZP_06947465.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus MN8]
 gi|49240789|emb|CAG39454.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|297577335|gb|EFH96048.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus MN8]
 gi|312436477|gb|ADQ75548.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193171|gb|EFU23570.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 518

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                            +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVGKEAK----------VYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|307711302|ref|ZP_07647723.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK321]
 gi|307616953|gb|EFN96132.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK321]
          Length = 533

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/494 (21%), Positives = 189/494 (38%), Gaps = 76/494 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------------AL 48
           M++   S   L   +W  A+ L G  +  ++   +L     + L                
Sbjct: 1   MSQTDLSR-ELYQSLWNAADILRGQMEANEYKSYLLGLIFYKYLSDNILQAVCDNLDETF 59

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS---------TNTRN 98
           E  + A       F  +++  +    +     Y      + + L            +   
Sbjct: 60  ESFQQAQLLYEENFADADVSEDLIEVLNDDLGYVIEPSLTFTKLVQSIHEGTFQLESLAQ 119

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDR 153
           +    I   ++  + +FED D  +   +L          + ++ K  + + +        
Sbjct: 120 SFRD-IEQANEKFENLFEDIDLYAK--KLGNTPQKQNKTISEVMKQLNDLNV--SGHAGD 174

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F S+  + A +F TP+ V HL T ++    +           ++YDPT
Sbjct: 175 ILGDAYEYLIGQFASDSGKKAGEFYTPQAVSHLMTQIVFAGREH------QKGMSVYDPT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +             +  +GQEL   T  +    M++  +  +     +
Sbjct: 229 MGSGSLLLNAKRYSKQAS-------TISYYGQELITSTFNLARMNMMLHGVAIENYHLSN 281

Query: 274 KNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LP 329
                  TL +D        F   L NPP+  KW  D   ++         RF   G L 
Sbjct: 282 H-----DTLDEDWPTTEPTDFDGVLMNPPYSLKWSADSGFLQ-------DPRFSSYGVLA 329

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ 
Sbjct: 330 PKSKADFAFLLHGFYHLKHS----GVMAIVLPHGVLFRGAA---EQKIRQHLLEEGAIDT 382

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + +D  
Sbjct: 383 VIGLPANIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFEK----GKNQNNMTEDHI 435

Query: 450 RQILDIYVSRENGK 463
            +IL+ Y  REN +
Sbjct: 436 AKILETYQKRENVE 449


>gi|21911180|ref|NP_665448.1| putative type I site-specific deoxyribonuclease hsdM modification
           subunit [Streptococcus pyogenes MGAS315]
 gi|28896556|ref|NP_802906.1| type I site-specific deoxyribonuclease [Streptococcus pyogenes
           SSI-1]
 gi|21905392|gb|AAM80251.1| putative type I site-specific deoxyribonuclease hsdM modification
           subunit [Streptococcus pyogenes MGAS315]
 gi|28811810|dbj|BAC64739.1| putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes SSI-1]
          Length = 526

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/502 (24%), Positives = 196/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+   ++  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFHDIEQNGEDFENLFEDIDLYSK--KLGSTPQKQNQTIANVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGCED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +   F   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D   +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|302333478|gb|ADL23671.1| Type I restriction-modification system methyltransferase subunit,
           HsdM_2 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 518

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/545 (21%), Positives = 206/545 (37%), Gaps = 68/545 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWTDEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K+ ++   V  I+A++ +      GK +  + D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKSRQQDDNVLFIDASNDFEK----GKNQNHLTDTQVDRIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P  +    ++  +   +     + +         +I 
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEEPIDLEQVQQDLKNIDKEIAEIEQEIN 506

Query: 520 KPMMQ 524
             + +
Sbjct: 507 AYLKE 511


>gi|94991200|ref|YP_599300.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10270]
 gi|94544708|gb|ABF34756.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10270]
          Length = 526

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 123/502 (24%), Positives = 197/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+   ++  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +   F   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + DD  +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDDHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|88195628|ref|YP_500434.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|258415889|ref|ZP_05682160.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|258420718|ref|ZP_05683657.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|258438383|ref|ZP_05689667.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|258443827|ref|ZP_05692166.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|258448234|ref|ZP_05696361.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|258454237|ref|ZP_05702208.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282893296|ref|ZP_06301530.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|282928537|ref|ZP_06336136.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|295406113|ref|ZP_06815921.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297244963|ref|ZP_06928840.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|300911561|ref|ZP_07129006.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|87203186|gb|ABD30996.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|257839482|gb|EEV63955.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|257843322|gb|EEV67732.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|257848427|gb|EEV72418.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|257851233|gb|EEV75176.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|257858473|gb|EEV81349.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|257863689|gb|EEV86446.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282589746|gb|EFB94831.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|282764614|gb|EFC04740.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|294969110|gb|EFG45131.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297178043|gb|EFH37291.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|300887193|gb|EFK82393.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 579

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/552 (21%), Positives = 204/552 (36%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +  +        I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDT 345

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 453

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  + 
Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKA 507

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 567 NAYLKELGVLKD 578


>gi|303244599|ref|ZP_07330932.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanothermococcus okinawensis IH1]
 gi|302485025|gb|EFL47956.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanothermococcus okinawensis IH1]
          Length = 539

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/579 (17%), Positives = 200/579 (34%), Gaps = 78/579 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           +       L   +W +AE L G    + +  ++L    L+      E  R  + +     
Sbjct: 5   KKQEMLKKLEKTLWGSAEKLRGSVDPSRYKDIVLGIIFLKYASDMFEERRRELIDLSKNP 64

Query: 63  GGS----------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105
                         +  ++   ++   FY   +     L       N+   +        
Sbjct: 65  KSDYYCETEDELIGLLEDNEEYISENVFYVPEQSRWDYLIKNAKNPNIAKLLDDAMILLE 124

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-----DTVPDRVMSNIYE 160
             +   K +       + I        L  +   F+ I         D     V   IY 
Sbjct: 125 KHNSKLKGVLPKEYVRAEIPH----EKLGALLDLFNNINYKEFIENKDESIGDVFGTIYG 180

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + +R F  ++ +   +F TP  +V L   L+             +   +YDP CG+GG  
Sbjct: 181 YFMRNFSQKLGQKGGEFFTPECIVKLLVELV-----------EPLRGRIYDPACGSGGMF 229

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             +   V +   +      L  +GQEL      +C   + I RL  D        I+QG 
Sbjct: 230 VQSSKFVKEYLKNGNG-IDLAIYGQELNSSNVRICKMNLAIHRLSHD-------QIKQGD 281

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------D 333
           TLS D     +  Y ++NPPF  K          +       RF  G+           +
Sbjct: 282 TLSNDKHRDLKADYIITNPPFNYK-------DYDQKVLEGDVRFPYGIVPKKAENAKSGN 334

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + L++ H    L    +  G AA ++++  L  G     E EIR+ ++E  +++ I++L
Sbjct: 335 ANFLWIQHFIYHL----SDNGIAAFIMANGSLSAGGK---EGEIRKKIIEEGIVDCIISL 387

Query: 394 PTDLFFRTNIATYLWILSNRKT----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           P  +F+ T I   +W++   K       R+ +   I+A +++T +      +   +D+Q 
Sbjct: 388 PNKMFYTTQIPACIWVIDKNKENGRFRSRKWETLFIDAREIYTPVAR---NQNEFSDEQI 444

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++I D+Y     G+          G+ ++  +       +IL       +       + S
Sbjct: 445 KKIADVYRCYR-GEDGYPDYKDEKGFCKVATIDEIREQDYILTPGRYVGIAD---VEEDS 500

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
              +     + K + +        E  +K ++     K 
Sbjct: 501 EPFEDKMERLTKELSEHFKKSRELEERIKNNLSELGFKA 539


>gi|57650597|ref|YP_186690.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|148266892|ref|YP_001245835.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150392937|ref|YP_001315612.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|161510023|ref|YP_001575682.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|258413472|ref|ZP_05681747.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|258421404|ref|ZP_05684331.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|258436896|ref|ZP_05689236.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|258444386|ref|ZP_05692720.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|258445598|ref|ZP_05693778.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|258448130|ref|ZP_05696259.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|258455962|ref|ZP_05703917.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|282893571|ref|ZP_06301804.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|282927465|ref|ZP_06335083.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|295405681|ref|ZP_06815491.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297245589|ref|ZP_06929457.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|304378946|ref|ZP_07361711.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284783|gb|AAW36877.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|147739961|gb|ABQ48259.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149945389|gb|ABR51325.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|160368832|gb|ABX29803.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257839719|gb|EEV64188.1| type I restriction-modification system [Staphylococcus aureus
           A9763]
 gi|257842828|gb|EEV67250.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9719]
 gi|257848687|gb|EEV72674.1| type I restriction-modification system [Staphylococcus aureus
           A9299]
 gi|257850645|gb|EEV74593.1| type I restriction-modification system [Staphylococcus aureus
           A8115]
 gi|257855548|gb|EEV78483.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|257858645|gb|EEV81519.1| type I restriction-modification system [Staphylococcus aureus
           A6224]
 gi|257862174|gb|EEV84947.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5937]
 gi|269941283|emb|CBI49678.1| type I restriction-modification system modification protein
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282590789|gb|EFB95865.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A10102]
 gi|282764257|gb|EFC04384.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A8117]
 gi|285816131|gb|ADC36618.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus 04-02981]
 gi|294969756|gb|EFG45775.1| type I restriction-modification system [Staphylococcus aureus
           A8819]
 gi|297177575|gb|EFH36826.1| type I restriction-modification system [Staphylococcus aureus
           A8796]
 gi|304342474|gb|EFM08348.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|312828927|emb|CBX33769.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130059|gb|EFT86048.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329314488|gb|AEB88901.1| Type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329725916|gb|EGG62395.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 518

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|114567766|ref|YP_754920.1| type I restriction-modification system, M subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338701|gb|ABI69549.1| type I restriction-modification system, M subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 891

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/504 (20%), Positives = 191/504 (37%), Gaps = 71/504 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-Y 59
           M     + + L +F+ K A+ L G    ++F + I     ++RL    +  R  + +K +
Sbjct: 1   MANEKITLSQLEHFLLKAADILRGKMDASEFKEFIFGMLFIKRLSDEFDLKRQKLIKKDF 60

Query: 60  LAFGGSNIDLESFVKVA---GYSFYNTSEYSL---------------STLGST--NTRNN 99
                    +   ++     G +F+                        L     N  N 
Sbjct: 61  AHLKDQPDLIHELLEDKTSYGETFFVPVRARWHESWVDENGDTVPALKDLKYDIGNMLNK 120

Query: 100 LESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVP---DRV 154
             + I   +D    + ++  DF++   + +     +K +  +F+  +            +
Sbjct: 121 AIAAIEEENDALAGVLKNNIDFNAVKGKTKIPDQKWKDLIDHFNQPQFVLVNDNFEFPDL 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +   YE+LI+ F     +   +F TP +VV L   L            P    T+YDPT 
Sbjct: 181 LGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVQL----------TKPEAGNTIYDPTV 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+GGFL  +  +V + G     P  L   GQ+      ++C   M++  +          
Sbjct: 231 GSGGFLIQSYQYVEEQGQD---PNDLALFGQDSNGTVWSICNMNMILHNITRFT------ 281

Query: 275 NIQQGSTLSK----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            I+ G TL      D    + F   L+NPPF + +                 RF    P+
Sbjct: 282 -IENGDTLEDPLILDKGKIRTFERVLANPPFSQNYS--------RANMKFSNRFWEWCPE 332

Query: 331 I-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 ++F+ H+   L+      G  A ++    LF G     E  IR  L+ +D+IEA
Sbjct: 333 TGKKADLMFVQHMLASLKPD----GHMATIMPHGVLFRGGK---EKLIREILINDDVIEA 385

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I++LP  LF+ T I   + + +  K +  + KV  INA   +      GK +  +  +  
Sbjct: 386 IISLPPGLFYGTGIPACILVCNKSKPDSLKNKVLFINADREYAE----GKAQNKLRPEDI 441

Query: 450 RQILDIYVSREN-GKFSRMLDYRT 472
            +I  ++ ++    K+SR++    
Sbjct: 442 EKIDFVFTNKLEIPKYSRLVTKEE 465


>gi|56808773|ref|ZP_00366489.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Streptococcus pyogenes M49 591]
 gi|209560056|ref|YP_002286528.1| Putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes NZ131]
 gi|209541257|gb|ACI61833.1| Putative type I site-specific deoxyribonuclease [Streptococcus
           pyogenes NZ131]
          Length = 526

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/502 (24%), Positives = 197/502 (39%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+   ++  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTEAQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTIANVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKY-------SNQSDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +   F   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D+  +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDNHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +ILD Y SR+N      L    
Sbjct: 435 KILDAYKSRDNSDKFSYLASFD 456


>gi|254360726|ref|ZP_04976874.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153091296|gb|EDN73270.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 604

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/574 (18%), Positives = 194/574 (33%), Gaps = 84/574 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L   +W  A+ L  +    ++  ++L F  L+ +  +    ++ ++           
Sbjct: 69  LNELDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 128

Query: 57  ---EKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLSTLGST---NTRNNL--ESYI 104
                +     S I  E   +     A   F+   +     + S    N  + L      
Sbjct: 129 LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 188

Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151
              S      FE            + R+        +L  +   FS              
Sbjct: 189 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 248

Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L                
Sbjct: 249 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML-----------EPYSG 297

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF   A   +     +      +  +GQE    T  + V  M IR +  D
Sbjct: 298 RIYDPAMGSGGFFVQADRFIQAHAGNRNA---ISVYGQESNSTTRKLAVMNMAIRGIPFD 354

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +   TL   L   K+    ++NPPF +K                  R+  G
Sbjct: 355 FGD------KPEDTLLNPLHIDKKMDVVMANPPFNQKEW-------WNESLANDPRWAYG 401

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+   L       G+ A++L++  +      SGE +IR+ +++ DL+
Sbjct: 402 TPPQGNANFAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGDIRKNIVQADLV 455

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ALP  LF  T I   +WI++  K    +G+V  INAT +           R    D
Sbjct: 456 EAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYLKDRV---LRDFTAD 510

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
              +I D Y + +  K +   +   F Y    +    +  F+L           +     
Sbjct: 511 DIAKISDTYHNWQ--KQNGYENIPAFCYCA-TLDEIAKNDFVLTAGRYV---GAVQEEND 564

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
                    ++   + +Q       E  + E++K
Sbjct: 565 GVPFAEKMQELTALLNEQFKQGRELEQQIAENLK 598


>gi|283954323|ref|ZP_06371844.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794122|gb|EFC32870.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 335

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 194/385 (50%), Gaps = 60/385 (15%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGE----LGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            LSNPP+GK WE D+  +  E K         RF  G+   SDG M++L+++ +K++   
Sbjct: 1   MLSNPPYGKSWENDQKILGVEKKGSNSTCNDPRFRVGITSKSDGQMMYLLNMLSKMKTDS 60

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             G R A V + S LFN    SG + IR+ ++E D +EAIVALPT++F+ T I T++WI+
Sbjct: 61  PLGSRIASVHNGSSLFNSD--SGMAAIRKDIIEKDYLEAIVALPTNMFYNTGIPTFIWII 118

Query: 411 SNRKTEERRGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           +N+K E ++GKV LINAT+   ++ ++   G K+  +  +   +I  +++     K  ++
Sbjct: 119 TNKKPEHKKGKVWLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENATNKDCKI 178

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            D + FGY +I + +P  +  + D    A+L+            +   L+ L+ + Q   
Sbjct: 179 YDNKDFGYTKITIEKPKSIEALKDDEKFAKLK-----------DKEKILEKLQELEQNPQ 227

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNL 587
            +   E F+         K L VK  KS     I                      D++ 
Sbjct: 228 DFKDREEFI---------KFLGVKLKKSEENLII----------------------DSDK 256

Query: 588 T-EYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           T   E +P    IQ Y+  EV P+V +++I +        E   VGYEI FN++FY Y P
Sbjct: 257 TNNTEKIPLKIDIQSYYDTEVKPYVKNSWIAR--------ESASVGYEILFNKYFYTYTP 308

Query: 647 SRKLQDIDAELKGVEAQIATLLEEM 671
            RKL++I+ EL+ +E ++  LL E+
Sbjct: 309 PRKLEEINNELEKLEKEVQDLLREI 333


>gi|256841216|ref|ZP_05546723.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
 gi|256737059|gb|EEU50386.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
          Length = 496

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 187/492 (38%), Gaps = 67/492 (13%)

Query: 1   MTEFTGS-----AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
           M + T +     A  L NF+++    + G     +F   I P    +R+    +      
Sbjct: 1   MAKKTINKELTGAQDLYNFLFEACNIIRGPVSQDNFKDYITPLLYYKRISDVYDEETE-- 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------- 108
                A   S  D E       + F          +       NL + I           
Sbjct: 59  ----EALISSGGDKEYASLPEQHRFVIPDGCHWQEVRER--TENLGAAIVGAMRQIEIAN 112

Query: 109 -DNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            D    +   F       +  L  + +   + ++ S  EL     P  +M + YE L+++
Sbjct: 113 PDTLYGVLSMFSSQKWTNKAILNDSKI-RDLIEHLSKRELGNKDYPADLMGDAYEILLKK 171

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +    A +F TPR VV L   +L           P    T+YDP CG+GG L +A+ 
Sbjct: 172 FADDSKAQAGEFYTPRSVVRLLVHIL----------DPQPGETIYDPACGSGGMLIEAIR 221

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           ++ D              GQE      A+    + +             N+ QG TL   
Sbjct: 222 YMHD-----DFLCCGSIFGQEKNVVNAAIAKMNLFLHG-------ASDFNVMQGDTLRDP 269

Query: 286 L----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    +F   ++NPPF  +     +    ++K     R   G P  S G   ++ H
Sbjct: 270 KILQGGNIAKFDCVIANPPFSLENWGATEWSSDKYK-----RNIYGTPSDSCGDYAWIQH 324

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   +    +G GR A+V+    LF  +    E+EIR+ L+E+DLIEA+V L   LF+ T
Sbjct: 325 MICSM---VSGQGRMAVVMPQGILFRNQ----ETEIRKQLVESDLIEAVVTLGDKLFYGT 377

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-E 460
            ++    I+   K     G++ +I+ + + T  R     + I+ ++   ++  +Y +  +
Sbjct: 378 GLSPCFLIIRRMKPAHHFGRILMIDGSKILTQKRA----QNILEENDIDRLYSLYQNYSD 433

Query: 461 NGKFSRMLDYRT 472
              +SR++  + 
Sbjct: 434 EEDYSRIVTLQE 445


>gi|237747137|ref|ZP_04577617.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes
           HOxBLS]
 gi|229378488|gb|EEO28579.1| type I site-specific deoxyribonuclease [Oxalobacter formigenes
           HOxBLS]
          Length = 526

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/550 (20%), Positives = 208/550 (37%), Gaps = 88/550 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45
           M+E       L   +W  A  L G     +F   IL F   + L                
Sbjct: 1   MSEEQKRL--LQQQLWNIANTLRGKMNADEFRDYILGFIFYKYLSEKVETYANKALEPDN 58

Query: 46  ---CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN--------TSEYSLSTLGST 94
                L+ T+   +    A     ++   +       F+         T  Y L  L   
Sbjct: 59  KVFAELDETKPEDKAYIDAIREEAVEDIGYFLKPSELFHVIAQKGNKKTDNYILVDLIG- 117

Query: 95  NTRNNLESYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147
               N+E         D+   +FED D +S  ++L     +K  L+ ++  +   I+   
Sbjct: 118 -ILKNIEQSTMGHDSADDFINLFEDIDLTS--SKLGRSNTDKNALIARVLAHLDAIDFDL 174

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V+ + YE+LI  F S   + A +F TP+ V  L   L+              +R
Sbjct: 175 SNTETDVLGDAYEYLIGEFASGAGKKAGEFYTPQPVSTLLAKLVTCHRK--------KLR 226

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDPTCG+G  L              +   +   +GQEL   T+ +    M++  +   
Sbjct: 227 NVYDPTCGSGSLL---------LRVKREAESVGRIYGQELNRTTYNLARMNMILHDVH-- 275

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326
                  +I+Q  TL +      RF   ++NPPF  +W  +   +  E       RF   
Sbjct: 276 ---YSDFDIRQEDTLERPQHRDLRFDAIVANPPFSAQWSANPLFMNDE-------RFSVY 325

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN- 384
             L   S   + F+ H+  +L       G  A+V+    LF G   S E+ IRR ++E  
Sbjct: 326 GKLAPASKADLAFVEHMIYQLSEE----GTMAVVMPHGVLFRG---SSEAHIRRHIIEKM 378

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP+++F+ T+I T + +L  +K  +    +  I+A+  +  ++     +  +
Sbjct: 379 NYLDAVIGLPSNIFYGTSIPTCILVL--KKCRKHPDNILFIDASQHFEKVKT----QNFL 432

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             +   +I++ Y  R+N  KF+ +   +        +  P    ++        ++    
Sbjct: 433 RSEDIERIVNAYAERKNIDKFAHVATLKEIEENDYNLNIP---RYVDTFEKEEEIDIAAV 489

Query: 504 WRKLSPLHQS 513
            ++L+ L   
Sbjct: 490 AKELAALETD 499


>gi|290957396|ref|YP_003488578.1| type I restriction modification system protein [Streptomyces
           scabiei 87.22]
 gi|260646922|emb|CBG70021.1| putative type I restriction modification system protein
           [Streptomyces scabiei 87.22]
          Length = 813

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 103/481 (21%), Positives = 186/481 (38%), Gaps = 77/481 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L   +W++ ++L G    + +   IL    ++ +                     +
Sbjct: 6   KKSDLYGSLWRSCDELRGGMDASQYKDYILTLLFVKYVTD----------------KAKS 49

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASF---SDNAKAIFEDFDFSS 122
                     G SF       +  L       + +   I      +     + +  DF+ 
Sbjct: 50  DPNSLIDVPVGGSF-----DDMVALKGDKEIGDKINKIIGRLAEANPTLVKVIDLTDFND 104

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDF 177
              +L K       L K+   F+ ++        D ++ + YE+L+R F +E  +    F
Sbjct: 105 E-EKLGKGKEMQDRLSKLVTIFADLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQF 163

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   ++          S     T+YDPTCG+G  L    +         + P
Sbjct: 164 YTPAEVSRILAKVV------GIDPSTRQDHTVYDPTCGSGSLLLKVAD---------EAP 208

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFH 293
             +  +GQE +  T A+    M++         +   +I +G T++   F      + F 
Sbjct: 209 RGITIYGQEKDNATWALAKMNMILH-------DNEDADILKGDTITNPQFTTGRQLRTFD 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF  K               + GRF  G P   +G   FL+H+   L+      
Sbjct: 262 FAVANPPFSIKSWS-------NGLENDYGRFEYGRPPEKNGDYAFLLHILKSLKST---- 310

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AAI+L    LF G A   E+ IRR LL    I+ I+ LP +LF+ T I   + +L   
Sbjct: 311 GKAAIILPHGVLFRGHA---EASIRRELLRRGYIKGIIGLPANLFYGTGIPACIIVLDKE 367

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
             + R G V +I+A+  +     +G K R +      +I+D++  +   + +SRM+    
Sbjct: 368 NAQARTG-VFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNRQVEIERYSRMVPLHE 422

Query: 473 F 473
            
Sbjct: 423 V 423


>gi|49485299|ref|YP_042520.1| putative restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49243742|emb|CAG42167.1| putative restriction enzyme modification protein [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 518

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/552 (21%), Positives = 205/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
            +       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  TWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  + D Q  +I++ Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQEDYVLFIDASNDFEK----GKNQNHLTDAQVERIINTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|329730414|gb|EGG66804.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I++ Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|120400560|gb|ABM21472.1| HsdM1 [Staphylococcus aureus]
          Length = 518

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEEITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I++ Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|227508544|ref|ZP_03938593.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227191876|gb|EEI71943.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 532

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/475 (22%), Positives = 202/475 (42%), Gaps = 71/475 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDL 69
           +W  A DL G+   ++F   IL     R L   ++   + + +        A+   +   
Sbjct: 19  LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78

Query: 70  ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLE-------------SYIASFSD-NAKAI 114
           +   ++ +   F+   +    ++       N +             S I   S+ + K +
Sbjct: 79  DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138

Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           FED D +S  +RL     E++ L+ K+  N + I+ H + +   V+ + YE+LI +F + 
Sbjct: 139 FEDMDLAS--SRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAAT 196

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  + + L+    +         +RT+YDPT G+G  L    ++   
Sbjct: 197 AGKKAGEFYTPQQVSKVLSQLVTLNREE--------VRTVYDPTMGSGSLLLRVGDYAK- 247

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    +   +GQEL   T+ +    ML+  +          +++QG TL  D F  
Sbjct: 248 ---------VAEYYGQELNGTTYNLARMNMLMHGIN-----YSRFDLRQGDTLENDQFPE 293

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F   ++NPP+   W       ++        R        S     F+ H+   L+  
Sbjct: 294 RTFDAVVANPPYSANWNATDKLDDERF------RKYGKTAPKSKADFAFVEHMLYHLKTD 347

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLW 408
               GR A+VL    LF G A   E +IR++++E D +++A++ +P +LF+ T+I T + 
Sbjct: 348 ----GRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVL 400

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +            +  I+A+  +      GK +  + D+  ++I+D Y  R++ K
Sbjct: 401 VFDK---SRINHDILFIDASKDFEK----GKNQNNLTDENVKKIIDTYKDRKDVK 448


>gi|116495552|ref|YP_807286.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei ATCC 334]
 gi|116105702|gb|ABJ70844.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei ATCC 334]
          Length = 532

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/494 (21%), Positives = 195/494 (39%), Gaps = 77/494 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M + T    +L   +W +A+ L      +++   +L     + L           LE   
Sbjct: 1   MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 53  SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107
           + + +       A+   ++  +    V+    Y+     + + L         +  +   
Sbjct: 59  TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116

Query: 108 SDNAKAI----------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
           S + + I          FED D  S   +L     ++  ++  + K  S ++L      +
Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYS--RKLGATPQKQNQVISDVMKQISTLDLVGQN-TN 173

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ + YE+LI +F S+  + A +F TP+ V  L T + +   + +         T+YDP
Sbjct: 174 DILGDAYEYLIGQFASDSGKNAGEFYTPQSVSRLITQIAMHGKEDV------RGFTIYDP 227

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L +A  +             +   GQEL   T+ +    M++  +  +     
Sbjct: 228 TMGSGSLLLNARRY-------SNERLSINYFGQELNTSTYNLARMNMILHGVPIN----- 275

Query: 273 SKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP 329
           ++++    TL +D        F   + NPP+   W+  K             RF   GL 
Sbjct: 276 NQHLHNADTLDQDWPIEEPTNFDAVVMNPPYSAHWQPSKGTEN-------DPRFVSYGLA 328

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H    L+      G   IVL    LF G A   E  IR+ LLEN  I+ 
Sbjct: 329 PKSKADFAFLLHGYYHLKDT----GVMCIVLPHGVLFRGGA---EGRIRKALLENGAIDT 381

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + +L   K       V  I+A+  +   +N    +  + DD  
Sbjct: 382 VIGLPANIFFNTSIPTTVTVL---KKSRTTRDVLFIDASKEFEKAKN----QNHLTDDNI 434

Query: 450 RQILDIYVSRENGK 463
           ++IL+  ++R++  
Sbjct: 435 QKILETCINRKDVD 448


>gi|298695076|gb|ADI98298.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus subsp. aureus ED133]
          Length = 518

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/551 (22%), Positives = 207/551 (37%), Gaps = 67/551 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL GD   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGDMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------------GSTNTRNNLESYIAS 106
           A+       +   ++     Y      L +                +T  R    S +  
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFYIEHLATAIRKVETSTLGE 128

Query: 107 FSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE L
Sbjct: 129 ESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFL 188

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L  
Sbjct: 189 IGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLR 240

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       K   +    GQE    T+ +    ML+  +     R  + +I+   TL
Sbjct: 241 VG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTL 285

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
               F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H+
Sbjct: 286 ENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHM 340

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
            + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T
Sbjct: 341 VHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y S+E 
Sbjct: 394 SIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKSKET 447

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K+S     +        +  P R     ++     L+      K      +     + 
Sbjct: 448 IDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEIN 506

Query: 521 PMMQQIYPYGW 531
             ++++     
Sbjct: 507 AYLKELGVLKD 517


>gi|322377802|ref|ZP_08052291.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M334]
 gi|321281225|gb|EFX58236.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M334]
          Length = 535

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 124/572 (21%), Positives = 212/572 (37%), Gaps = 74/572 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 4   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 63

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
             A  E Y  +       E  + V     ++    E + + L +        LE     F
Sbjct: 64  LEAALEVYRNYYEDADTHEDLLAVMKDELNYSIKPELTFTALVARVNEGTFQLEDLAQGF 123

Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                SD     +FED D  S   +L     ++   +  + K  + +++        ++ 
Sbjct: 124 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 179

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 180 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDQL------GFTIYDATMGS 233

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +  + +      +
Sbjct: 234 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 281

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW  +   +          RF P   L   S
Sbjct: 282 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSANSGFLN-------DPRFSPFGKLAPQS 334

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 335 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 388

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T+     V  I+A+  +      GK + I+ D    +I
Sbjct: 389 LPANIFFNTSIPTTVIILKKNRTDR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 441

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y SRE   KF+ +  Y         +  P R     ++  +  L   ++    +   
Sbjct: 442 LEAYKSREEMDKFAHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINTTNEA 500

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
                  L  M+ Q++          +     
Sbjct: 501 IQNQTASLLEMLGQLHGTTPEADAEFKEFLKE 532


>gi|57651317|ref|YP_185366.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87160229|ref|YP_493119.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|151220610|ref|YP_001331432.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161508680|ref|YP_001574339.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141678|ref|ZP_03566171.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|57285503|gb|AAW37597.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|87126203|gb|ABD20717.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|150373410|dbj|BAF66670.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160367489|gb|ABX28460.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|269940011|emb|CBI48387.1| type I restriction-modification system modification protein
           [Staphylococcus aureus subsp. aureus TW20]
 gi|302750321|gb|ADL64498.1| Type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|320139279|gb|EFW31158.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
          Length = 518

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|227523728|ref|ZP_03953777.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus hilgardii ATCC 8290]
 gi|227089043|gb|EEI24355.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus hilgardii ATCC 8290]
          Length = 532

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 105/475 (22%), Positives = 202/475 (42%), Gaps = 71/475 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDL 69
           +W  A DL G+   ++F   IL     R L   ++   + + +        A+   +   
Sbjct: 19  LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78

Query: 70  ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLE-------------SYIASFSD-NAKAI 114
           +   ++ +   F+   +    ++       N +             S I   S+ + K +
Sbjct: 79  DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138

Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           FED D +S  +RL     E++ L+ K+  N + I+ H + +   V+ + YE+LI +F + 
Sbjct: 139 FEDMDLAS--SRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAAT 196

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  + + L+    +         +RT+YDPT G+G  L    ++   
Sbjct: 197 AGKKAGEFYTPQQVSKVLSQLVTLNREE--------VRTVYDPTMGSGSLLLRVGDYAK- 247

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    +   +GQEL   T+ +    ML+  +          +++QG TL  D F  
Sbjct: 248 ---------VAEYYGQELNGTTYNLARMNMLMHGIN-----YSRFDLRQGDTLENDQFPE 293

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F   ++NPP+   W       ++        R        S     F+ H+   L+  
Sbjct: 294 RTFDAVVANPPYSANWNATDKLDDERF------RKYGKTAPKSKADFAFVEHMLYHLKTD 347

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLW 408
               GR A+VL    LF G A   E +IR++++E D +++A++ +P +LF+ T+I T + 
Sbjct: 348 ----GRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYGTSIPTVVL 400

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           +            +  I+A+  +      GK +  + D+  ++I+D Y  R++ K
Sbjct: 401 VFDK---SRINHDILFIDASKDFEK----GKNQNNLTDENVKKIIDTYKDRKDVK 448


>gi|120400562|gb|ABM21473.1| HsdM2 [Staphylococcus aureus]
          Length = 518

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEEITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDEQFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYGATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|24636602|dbj|BAC22943.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus]
          Length = 518

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 208/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  + + ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILSKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MIHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPFDLDQVQQDLKNIDKEIAEVEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|15923421|ref|NP_370955.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|156978760|ref|YP_001441019.1| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255005227|ref|ZP_05143828.2| type I site-specific deoxyribonuclease LldI chain [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|14246199|dbj|BAB56593.1| probable type I site-specific deoxyribonuclease LldI chain
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720895|dbj|BAF77312.1| probable type I site-specific deoxyribonuclease LldI chain
           [Staphylococcus aureus subsp. aureus Mu3]
          Length = 518

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPVNIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCCQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|291566631|dbj|BAI88903.1| type I restriction enzyme, modification chain [Arthrospira
           platensis NIES-39]
          Length = 813

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W   ++L G    + +   +L    L+ +                   
Sbjct: 1   MAVKKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
            +       +   G +F       L  L       + +   I + +   + K + +  DF
Sbjct: 45  YAGKPNPLIIVPQGAAFS-----DLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L ++   F GI L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   +L  P             T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
            P  L  +GQE++  T+++    M +           +  I + +TL+   +       K
Sbjct: 204 APNGLSIYGQEMDNATYSLARMNMFMHN-------HPTAEIWKDNTLAAPYWKEKDGSLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF + ++NPPF  K   +     +     E  RFG G+P   +G   FL+H+   L+   
Sbjct: 257 RFDFAVANPPFSYKSWSNGVDTAR----DEFNRFGYGVPPAKNGDYAFLLHILKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA++L    LF G A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L
Sbjct: 312 ---GKAAVILPHGVLFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVL 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
              +   R G + +I+A+  +     +G K R +      +I+D++ ++    ++SR++ 
Sbjct: 366 DKAEAATRDG-LFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNNQLEIPRYSRLVS 420

Query: 470 YRT 472
              
Sbjct: 421 LEE 423


>gi|15926109|ref|NP_373642.1| type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus N315]
 gi|13700322|dbj|BAB41620.1| probable type I site-specific deoxyribonuclease LldI chain hsdM
           [Staphylococcus aureus subsp. aureus N315]
          Length = 518

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPVNIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|241762572|ref|ZP_04760646.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372833|gb|EER62530.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 495

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/533 (19%), Positives = 190/533 (35%), Gaps = 68/533 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L  + + +D+  V L    LR +  A E    A+              +    +A 
Sbjct: 4   AADKLRKNLEPSDYKHVALGLIFLRYISTAFEARHVALM-----LDDPAAAEDPDEYLAE 58

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIA--------SFSDNAKAIFEDFDFSSTIARLEK 129
             F+       S L       ++   I         +  +  K +         +     
Sbjct: 59  NIFWVPETARWSHLRDNARSPSIGKIIDEAMLAIEKANPEQLKGVLPKDYGRPAL----D 114

Query: 130 AGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           + +L ++    S I +   D     V+  +YE+ +  F     +   +F TP  VV    
Sbjct: 115 SVMLGELIDLISDIGMGDTDDKARDVLGRVYEYFLGGFAGAEGKRGGEFYTPSSVVRTLV 174

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++L                 +YDP CG+GG    +   V   G        +  +GQE  
Sbjct: 175 SML-----------EPYKGRVYDPCCGSGGMFVQSERFVETHG---GKLGDIAIYGQESN 220

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306
             T  +    + +R + +D        I+  +  +  +D     RF Y L+NPPF     
Sbjct: 221 HTTWRLARMNLAVRGIGAD--------IRWNNEGSFLRDELKDLRFDYILANPPFNVS-- 270

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                 +      E  R+  G P   + +  +L H+   L       G A +VL++  + 
Sbjct: 271 ------DWNASLEEDPRWQYGKPPAGNANYAWLQHILWHLAPD----GTAGVVLANGSM- 319

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
                + E EIRR ++E D+++ +VALP  LF+ T I   LW L+  K +    +R G++
Sbjct: 320 -SSNQNSEGEIRRRMVEADVVDCMVALPGQLFYSTQIPACLWFLTRTKKQKGWRDRGGEI 378

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVL 481
             I+A  L   +      RR + D+   +I D Y +    K +   +  + G+ +   + 
Sbjct: 379 LFIDARKLGKLVDRT---RRELTDEDVARIADTYHAWRGEKDAGTYEDIS-GFCKSATLD 434

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
                 F+L        E      + S      +  + K + +Q        +
Sbjct: 435 EVAHQGFVLTPGRYVGAEE---VEEDSVPFTERFAALEKTLKEQFAQGEALNA 484


>gi|323442787|gb|EGB00413.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O46]
          Length = 518

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEAYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFIHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I++ Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDTQVERIINTYKGKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|253730780|ref|ZP_04864945.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725493|gb|EES94222.1| site-specific DNA-methyltransferase (adenine-specific)
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 518

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 205/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  + D Q  +I+  Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLTDAQVERIISTYKHKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|330506919|ref|YP_004383347.1| N-6 DNA methylase [Methanosaeta concilii GP-6]
 gi|328927727|gb|AEB67529.1| N-6 DNA Methylase [Methanosaeta concilii GP-6]
          Length = 546

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 112/525 (21%), Positives = 194/525 (36%), Gaps = 63/525 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNI 67
           + L  ++W  A  + G      F   ILP    +RL    E   +A VRE         I
Sbjct: 32  SMLETWLWDAACAIRGATDAPKFKDFILPLVFFKRLSDVFEDEFAAHVREYGDEELARTI 91

Query: 68  DLESFVKVAGY------SFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKAI 114
             E               FY   +Y+   + +      L  ++       A  + + + +
Sbjct: 92  VEEDLAHSLKTGSTPIIRFYVPGDYNWRAIRNHGADGRLGEFVTESLREVARLNPDLQGV 151

Query: 115 FE--DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +  D++   +  R      L  + +  S   L  +     ++   YE+L+R+F     +
Sbjct: 152 LDIKDYNERQSGQRTLDDDRLGALIEVLSRHRLGLENAEPDILGRAYEYLLRKFAEGQGQ 211

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A +F TP++V  L   L+           P    T+YDP CG+GG L  A         
Sbjct: 212 SAGEFYTPKEVGDLIAELI----------DPVPYSTIYDPACGSGGLLIKARLLYERRHP 261

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
             +        GQEL P T A+    M +                 G T  K  F  +  
Sbjct: 262 DERSRA-PRLWGQELNPVTFAMAKMNMFLHDYTDSSFAI-------GDTFRKPGFGPEGS 313

Query: 291 --RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F Y ++NP + +    D       ++N    RF  G+P  S     ++ H+   L+ 
Sbjct: 314 LMQFDYVVANPMWNQDNYDD-----AFYENDSFNRFNFGIPPRSSADWGWVQHMFASLKE 368

Query: 349 PPNGGGRAAIVLSSSPLFNGRAG---SGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
               GGRAA+VL +  +  G      + E  IR+  +E D IE +V LP +LF+ T    
Sbjct: 369 ----GGRAAVVLDTGAVSRGSGSRSSNREKAIRQAFVEADAIEGVVLLPENLFYNTTAPG 424

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
            + +L   K EER G++ L+NA++ +   +     +  +  +    + ++Y   E     
Sbjct: 425 IILLLRKGKPEERAGQILLVNASNYFVKEK----PKNALTPEGIAAVAEVYQKWE----- 475

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
                R    R I +       + L  +    +      R ++ +
Sbjct: 476 ----TREKLSRVITLDEVREADYNLSPSQFVEINEREKHRPIAEI 516


>gi|229512706|ref|ZP_04402174.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TMA 21]
 gi|229350216|gb|EEO15168.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TMA 21]
          Length = 523

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 102/485 (21%), Positives = 175/485 (36%), Gaps = 69/485 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L   +W  A  L G+    DF   IL     + L   L      +  +      S I
Sbjct: 6   QQELKKQLWNIANTLRGNMDADDFRDYILGLIFYKYLSDKLNQYADDLLSE-DGLTFSEI 64

Query: 68  DL-------------ESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNA 111
           D              E  +   GY F  +  + +      N     +++   +     + 
Sbjct: 65  DEKSEQGKAMLAAIREEALDTLGYFFAPSELFHVIAQAGANGEFILDDVRDVLNDIEQST 124

Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                  DF+     L+            +  L+ ++  +   I+ H       ++ + Y
Sbjct: 125 LGAESADDFNGLFDELDLQSNKLGKTPEARNKLIAQVLVHLDNIDFHLQESEIDILGDAY 184

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F S   + A +F TP+ V  L   L+              I+++YDPTCG+G  
Sbjct: 185 EYLIGMFASGAGKKAGEFYTPQMVSKLLAKLVTLD--------NPNIKSVYDPTCGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L              K       +GQE  P T+ +    M++  +          +I+  
Sbjct: 237 LLRVAK--EANNPDIK------YYGQERNPSTYNLARMNMIMHDVH-----YKRFDIEND 283

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TL        RF   ++NPPF   W      +  +            L   S     F+
Sbjct: 284 DTLEAPQHLDLRFDAVVANPPFSANWSASPLHLSSDRFADY-----GKLAPQSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLF 398
           +H+ ++L    N  G  A+VL    LF G A   E  IR+ LL E + ++ ++ LP ++F
Sbjct: 339 LHMLHQL----NDTGTMAVVLPHGVLFRGAA---EGHIRQHLLKEKNYLDMVIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + +    +  +   KV  I+A+  +      G     + ++  ++ILD    
Sbjct: 392 FGTSIPTCVLVFKKNRQAD--DKVLFIDASQYYEK----GTNNNQMREEDLQRILDAVTK 445

Query: 459 RENGK 463
           REN  
Sbjct: 446 RENID 450


>gi|282850456|ref|ZP_06259835.1| type I restriction-modification system, M subunit [Veillonella
           parvula ATCC 17745]
 gi|282579949|gb|EFB85353.1| type I restriction-modification system, M subunit [Veillonella
           parvula ATCC 17745]
          Length = 533

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 191/504 (37%), Gaps = 79/504 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP---------- 50
           M E    A ++++ +W  A DL G    + F   ILPF   + L    E           
Sbjct: 1   MAE--SKAQNISSQLWAIANDLRGTMDASSFKDYILPFLFYKYLSIHQEEYLVNSDLVDI 58

Query: 51  -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTN-----TRNNLESY 103
               +V E Y             + +AG   Y    E + ++L  +        ++ +  
Sbjct: 59  SDGKSVNEAYKELVEDAGLEACLIDIAGTLGYAINPEDTWASLTESIHNGSVIPSDYQRL 118

Query: 104 IASFSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTV 150
             +F+ NA          + IF   +   +        +   L  +      IE   +  
Sbjct: 119 FENFNKNAEINKEAAADFRGIFNYINLGDSGLGSTTAGRTKTLNAVVTKIDEIEYKDENG 178

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D  +  IYE+LI +F +   +   +F TP +V  +   ++     +          T+Y
Sbjct: 179 KDI-LGEIYEYLIGKFAANAGKKGGEFYTPHEVSKILAKIVTGNIKSQND-----TFTVY 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPT G+G  L      V +          +  +GQEL   T+ +    +++  +  +   
Sbjct: 233 DPTMGSGSLLLT----VRNELPDGSRQGAVSFYGQELNTVTYNLARMNLMMHGVTYNNMT 288

Query: 271 DLSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +       TL  D   G         + F   ++NPP+  KW+  +  +       + 
Sbjct: 289 LNNA-----DTLESDWPDGPDRDGIDRPRSFDAVVANPPYSAKWDNSESKL-------KD 336

Query: 322 GRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            RF     L   S     F++H    L       G  AIVL    LF G A   E +IR+
Sbjct: 337 PRFSDYGKLAPASKADYAFILHSLYHLNNE----GTMAIVLPHGVLFRGAA---EGKIRQ 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            ++E + ++A++ LP +LF+ T+I T + +    +T      V  I+A++ +      GK
Sbjct: 390 TIIEKNYLDAVIGLPANLFYGTSIPTTILVFKKNRTTR---DVLFIDASNEFEK----GK 442

Query: 440 KRRIINDDQRRQILDIYVSRENGK 463
            +  ++ +   +I++ Y +R++  
Sbjct: 443 NQNNLSKENITKIIETYQNRQDVD 466


>gi|282881750|ref|ZP_06290411.1| putatIve type i restriction enzyme hindviip m protein
           [Peptoniphilus lacrimalis 315-B]
 gi|281298400|gb|EFA90835.1| putatIve type i restriction enzyme hindviip m protein
           [Peptoniphilus lacrimalis 315-B]
          Length = 510

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 104/534 (19%), Positives = 192/534 (35%), Gaps = 68/534 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              IW  A  LWG     ++ KVI+    LR +  A E     + +      G   + + 
Sbjct: 12  EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLK-----DGDGFENDR 66

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                   F+   E   S + S           ++    I   + + K +      S  +
Sbjct: 67  DAYAEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEKENTSLKNVLPKNYASPDL 126

Query: 125 ARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +     +L ++   F + +++        ++   YE+ I +F +       +F TP  +
Sbjct: 127 DK----RVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSI 182

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V    A+L           P     +YDP CG+GG    +   V     +      +  +
Sbjct: 183 VKTIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---NISVY 229

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE   +T  +    M IR ++++             T   D+    +  + ++NPPF  
Sbjct: 230 GQESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKSDFIMANPPFNL 283

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                        K  +  R+  G P   + +  ++ H+ + L       G+  +VL++ 
Sbjct: 284 SNWGAD-------KLKDDVRWKYGTPPSGNANYAWIQHMIHHLAP----NGKIGLVLANG 332

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L      SGE EIRR ++E+DLIE IVALPT LF+   I   LW ++  K  +++GK  
Sbjct: 333 AL--SSQSSGEGEIRRKIIEDDLIEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTL 388

Query: 424 LINATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            I+A  +   +     K R   +             +   +   +NG+          G+
Sbjct: 389 FIDARKMGYMVDR---KHRDFTEGIQADGSLGDIDLLAKTFEDFQNGEL-----KEKKGF 440

Query: 476 RRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             I  +    +  +IL       +E      +      +     L  M ++ + 
Sbjct: 441 SAIASIEDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSGMFEKSHE 494


>gi|269202053|ref|YP_003281322.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|262074343|gb|ACY10316.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
          Length = 518

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGILFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|163790646|ref|ZP_02185074.1| type I restriction-modification system methyltransferase subunit
           [Carnobacterium sp. AT7]
 gi|159874094|gb|EDP68170.1| type I restriction-modification system methyltransferase subunit
           [Carnobacterium sp. AT7]
          Length = 540

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 116/497 (23%), Positives = 197/497 (39%), Gaps = 70/497 (14%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPT 51
           MTE    +++ L   +W +A+ L       ++   +L     + L           LE  
Sbjct: 1   MTEKIEKSSTTLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60

Query: 52  RSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYI 104
              ++        A   S I  +   ++     Y        T       +    LE  +
Sbjct: 61  TEDLQVAQKLYVEACEDSAIKEDLLEELQDEFSYTIEPQLTFTAQVNAIHDGSFQLEDLV 120

Query: 105 ASF------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             F      S+  + +FED D  S    ++  ++   +  + K  S   L+       V+
Sbjct: 121 QGFRDIEQSSEIFENLFEDIDLYSKKLGVSPQKQNKTIADVMKELS--VLNMAGHAGDVL 178

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI +F SE  + A +F TP+ V  L T ++L   +           ++YDPT G
Sbjct: 179 GDAYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKEN------QKGFSVYDPTMG 232

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +A  +          P  +   GQEL   T+ +    M++  + +      +++
Sbjct: 233 SGSLLLNAKKY-------SNEPGTISYFGQELNTSTYNLARMNMILHGVST-----ANQD 280

Query: 276 IQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +    TL +D  T +   F   L NPP+   W  DK  +E         RF     L   
Sbjct: 281 LHNADTLDQDWPTEEPTNFDAVLMNPPYSANWSADKGFLE-------DVRFSTYGVLAPK 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G    GE +IR+ LLEN  I+ ++
Sbjct: 334 SKADFAFLLHGYYHLKDS----GVMAIVLPHGVLFRGG---GEGKIRKVLLENGAIDTVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   ++ +    V  I+A+  +   +N    +  + D+    
Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRSTK---DVLFIDASQGFEKSKN----QNTLTDEHIDT 439

Query: 452 ILDIYVSRENGKFSRML 468
           IL  +  REN +    +
Sbjct: 440 ILKAHSKRENKEKYAYV 456


>gi|283769412|ref|ZP_06342310.1| putative type I restriction-modification system, M subunit
           [Bulleidia extructa W1219]
 gi|283103937|gb|EFC05322.1| putative type I restriction-modification system, M subunit
           [Bulleidia extructa W1219]
          Length = 510

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 193/532 (36%), Gaps = 64/532 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              IW  A  LWG     ++ KVI+    LR +  A E     + ++     G   + + 
Sbjct: 12  EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKE-----GDGFENDR 66

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----- 126
              V    F+   E   S + S      + + I       +   E+    + + +     
Sbjct: 67  DAYVEENIFFVPEEARWSKISSAAHTPEIGTVIDDAMRAIEK--ENVSLKNVLPKNYASP 124

Query: 127 LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                +L ++   F + +++        ++   YE+ I +F +       +F TP  +V 
Sbjct: 125 DLDKRVLGEVVDLFTNEVKMDETEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
              A+L           P     +YDP CG+GG    +   V     +      +  +GQ
Sbjct: 185 TIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---NISVYGQ 231

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E   +T  +    M IR ++++             T   D+    +  + ++NPPF    
Sbjct: 232 ESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKSDFIMANPPFNLSN 285

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K  +  R+  G P   + +  ++ H+ + L       G+  +VL++  L
Sbjct: 286 WGAD-------KLKDDVRWKYGTPPSGNANYAWIQHMIHHLAP----NGKIGLVLANGAL 334

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 SGE EIR+ ++E+DL+E IVALPT LF+   I   LW ++  K  +++GK   I
Sbjct: 335 --SSQSSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTLFI 390

Query: 426 NATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +A  +   +     K R   +             +   +   +NG+          G+  
Sbjct: 391 DARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNGEL-----EEKKGFSA 442

Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           I  +    +  +IL       +E      +      +     L  M ++ + 
Sbjct: 443 IASIEDIAKQDYILTPGRYVGIEEQEDDGEPFEKKMTRLTSELSDMFKKSHE 494


>gi|154685169|ref|YP_001420330.1| type I restriction-modification system methyltransferase subunit
           like protein [Bacillus amyloliquefaciens FZB42]
 gi|154351020|gb|ABS73099.1| type I restriction-modification system methyltransferase subunit
           like protein [Bacillus amyloliquefaciens FZB42]
          Length = 523

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 101/551 (18%), Positives = 209/551 (37%), Gaps = 73/551 (13%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   +   S+   +W +A  L G  + +++  V+L    L+      E  ++ + ++ 
Sbjct: 1   MAKKKDTKEKSMEETLWDSANKLRGSVEASEYKHVVLGLIFLKFASDKFEERKAELLDEG 60

Query: 60  LAFGGSNIDLESFVKVAGYSFY--NTSEYSL--STLGSTNTRNNLESYI---ASFSDNAK 112
                  ++           FY   TS +S         +    +++ +      +   K
Sbjct: 61  KEKYVDMVE----FYTMKNVFYLSETSRWSYLVENAKQEDIALKIDTALFTVEKNNPALK 116

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
                    +  +RL      L  +    + I    D   D  +  IYE+ + +F     
Sbjct: 117 GALP----DNYYSRLNLDVSKLASLIDTINNINTIKDKQQDI-VGRIYEYFLSKFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G  +F TP+ +V+L   +L                 +YDP CG+GG    ++  +    
Sbjct: 172 KGKGEFYTPKSIVNLIAEML-----------EPYKGKIYDPACGSGGMFVQSVKFIESHQ 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +  +GQE    T+ +    + IR + ++     +       T   D     +
Sbjct: 221 GN---KKDISIYGQEYTTTTYKLAKMNLAIRGISANLGETAA------DTFFNDQHKDLK 271

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPP 350
             + ++NPPF       +     E++  +  R+ G  +P   + +  +++++ +KL    
Sbjct: 272 ADFIMANPPFN------QKQWRAENELTDDPRWAGYEVPPRGNANYAWILNIVSKL---- 321

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G A  +L++  L  G     E +IR+ L+ENDL+E+I+ LP ++F+ TNI+  LWIL
Sbjct: 322 SENGVAGFLLANGALSGGG---DEYKIRKKLIENDLVESIIVLPQNMFYTTNISVTLWIL 378

Query: 411 SNRKTEERRG-------------KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           +  K                   +V  ++  ++         K    ++D   ++ +IY 
Sbjct: 379 NKNKKARTIDQNGSLKKYRNREKEVLFMDLREMGVPFEK---KYTQFSEDDITKVTNIYH 435

Query: 458 SRENGKFSRMLDY-RTFGYRRIKVLRPLRMSFILDKTGLARL---EADITWRKLSPLHQS 513
           + +   +         F Y        +   F L  +        + DI + +   L QS
Sbjct: 436 NWQQTDYETKYQNIPEFSYSA-TFEEVVNKDFSLVPSKYIEFANRDEDIDFDEKMKLIQS 494

Query: 514 FWLDILKPMMQ 524
            ++D+LK    
Sbjct: 495 EFVDLLKAEED 505


>gi|227529075|ref|ZP_03959124.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351087|gb|EEJ41378.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus vaginalis ATCC 49540]
          Length = 550

 Score =  300 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 106/508 (20%), Positives = 191/508 (37%), Gaps = 80/508 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSA 54
             A  + N IW+ A  L G+   +++   IL F   R L                    +
Sbjct: 2   SKAQKITNKIWEMANRLRGNMDASEYRDYILGFMFYRYLSEHQEKYLVKNEVVFPEEGQS 61

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIASFS 108
           V + YL         ++   +AG   Y  +  Y+ +T+      +    ++ +    SF+
Sbjct: 62  VNDAYLTQVPEEDLNDALADIAGSLGYAIAPQYTWATIVDKVHDNKIAASDYQDMFDSFN 121

Query: 109 DNAK----------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            N             +F+D + +++        +A  L  I      IE   +   D  +
Sbjct: 122 HNLNLNANSKMDFTGVFDDMNLNNSRLGNNTAARAKALTNIIDLVDEIEYRDENGKDI-L 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IY +LI  F S   + A +F TP  V  +   L+ +  D           ++YD  CG
Sbjct: 181 GDIYTYLIAEFASNSGKKAGEFFTPHQVSEVLAKLVTENLDKNITRP-----SVYDFACG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      +           ++  HGQEL   T+ +    +++  +  +       +
Sbjct: 236 SGSLLLTVSEQLPS-------NMVVHYHGQELNTSTYNLARMNLMMHDVRYENM-----D 283

Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           ++   TL  D   G         + F   ++NPP+  +W       +      +  RF  
Sbjct: 284 LRNADTLEMDWPDGVDEHGVDHPRSFDMVVANPPYSARW-------DNNDNKLKDPRFKE 336

Query: 327 --GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   +     FL+H    L+      G  AIVL    LF G     E++IR+ LLE 
Sbjct: 337 YGALAPKTKADYAFLLHGLYHLKQD----GTMAIVLPHGVLFRGAK---EAKIRQALLEK 389

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+AI+ LP +LF+ T I T + +L   K  +    V  I+A+  +      GK +  +
Sbjct: 390 NQIDAIIGLPANLFYSTGIPTVVLVLKKNKENK---DVLFIDASKDFEK----GKNQNTL 442

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472
             +   +I++ Y  R++      +    
Sbjct: 443 RKEDIDKIINTYKERKDVDKYAHVASID 470


>gi|309808312|ref|ZP_07702218.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168459|gb|EFO70571.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
          Length = 398

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 170/439 (38%), Gaps = 49/439 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +         F+   E    T+             +N    I + +   K 
Sbjct: 59  ---GDGFEDDRDAYTMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D     +       T + DL    + 
Sbjct: 222 NRG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I++LP  LF+  +I   LW +S 
Sbjct: 322 NGKIGLVLANGALSSQNC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISK 379

Query: 413 RKTEERRGKVQLINATDLW 431
            K ++ +  + ++   D W
Sbjct: 380 NKNKKEKQSLLMLAKWDTW 398


>gi|254448598|ref|ZP_05062057.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
 gi|198261787|gb|EDY86073.1| type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HTCC5015]
          Length = 494

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 187/459 (40%), Gaps = 53/459 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L + +W  AE L G    +D+ + I P    +RL        +   E +       
Sbjct: 5   NKKKLEDLLWGAAEFLRGQIDASDYKQYIFPLLFYKRLSDVYLEEYTEALEIHEG----- 59

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESY---IASFSDNAKAIFEDFDFS 121
            D E       + F    E     +   S N    +++    I + +     +F D  ++
Sbjct: 60  -DAEYAAMPMFHRFDIPQEARWEKVRHTSKNIGEAIQNALRLIEANNPRLHGVFGDAQWA 118

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +   RL    LL  + ++FS I L   +V    +   YE+LI++F  +    A +F T R
Sbjct: 119 NK-ERLPDH-LLSDLIEHFSKIPLGIKSVAQDDLGEAYEYLIKKFADDSGHTAAEFYTNR 176

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            VVHL T ++                T YDPTCGTGG L +A   V D  S  +    + 
Sbjct: 177 TVVHLMTRIMGL----------KPGETAYDPTCGTGGMLLNA---VMDLRSQGQEWRGVH 223

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLS 297
            +GQE+   T A+    M +  +E         ++ +G TL++  F      K+F    +
Sbjct: 224 LYGQEVNLLTSAIARMNMFLHDIE-------EFDVLRGDTLAEPKFIENDQLKQFDVIFA 276

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+  K          +      GR   G+P        F  H+   L+      GRAA
Sbjct: 277 NPPYSIK-----KWNRDKFAADPYGRNLYGVPPQGCADYAFYTHIIKSLKPDT---GRAA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++     LF       E  IR+ ++E+D+IEA++ L   LF+ + + + + +L+  K  +
Sbjct: 329 MLWPHGVLFR----DSEKSIRKQVIESDIIEAVIGLGPSLFYNSTMESCVVVLNKNKRNK 384

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            + +V  I+A++  +  R     R  +++     I   Y
Sbjct: 385 LKNRVLFIDASEEISKERG----RTFLSEKNIDSICKKY 419


>gi|15924798|ref|NP_372332.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927382|ref|NP_374915.1| hypothetical protein SA1626 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283480|ref|NP_646568.1| hypothetical protein MW1751 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486627|ref|YP_043848.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|148268280|ref|YP_001247223.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394345|ref|YP_001317020.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156980124|ref|YP_001442383.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|255006594|ref|ZP_05145195.2| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|258446038|ref|ZP_05694214.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|269203441|ref|YP_003282710.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|13701601|dbj|BAB42894.1| SA1626 [Staphylococcus aureus subsp. aureus N315]
 gi|14247580|dbj|BAB57970.1| type I restriction enzyme EcoR124II M protein homolog
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204921|dbj|BAB95616.1| hsdM [Staphylococcus aureus subsp. aureus MW2]
 gi|49245070|emb|CAG43536.1| putative type I restriction enzyme modification protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|147741349|gb|ABQ49647.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946797|gb|ABR52733.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|156722259|dbj|BAF78676.1| type I restriction enzyme EcoR124II M protein homolog
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257855280|gb|EEV78219.1| type I restriction-modification system [Staphylococcus aureus
           A6300]
 gi|262075731|gb|ACY11704.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|285817487|gb|ADC37974.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Staphylococcus aureus 04-02981]
 gi|312830179|emb|CBX35021.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130553|gb|EFT86539.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|329727301|gb|EGG63757.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 518

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 118/552 (21%), Positives = 204/552 (36%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +  +        I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  + 
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKA 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|323490714|ref|ZP_08095916.1| type I restriction-modification system, M subunit [Planococcus
           donghaensis MPA1U2]
 gi|323395596|gb|EGA88440.1| type I restriction-modification system, M subunit [Planococcus
           donghaensis MPA1U2]
          Length = 527

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/550 (21%), Positives = 212/550 (38%), Gaps = 70/550 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G  +  DF   IL     R L    E   + + E+       
Sbjct: 9   QQQAELHKKLWTMANDLRGQMEAYDFKNYILGLIFYRYLSEKTEARIAKLLEEDNISYED 68

Query: 66  NIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTRNN--------LESYIASFSDNA 111
               E + +      +    F    E+  S++ +   +++        L   I +  ++ 
Sbjct: 69  AWKDEEYREGLIETLLEEIGFVIEPEFLFSSMVTEIPKSDQGKFDVELLHKAIKAIEEST 128

Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                  DF      ++            ++ L+ KI  + + I    D V   V+ + Y
Sbjct: 129 LGTDSQQDFEHLFDDMDLTSTKLGRDVKSRSKLIAKIILSINDIPFLHDDVDIDVLGDAY 188

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI +F +   + A +F TP+ V  +   ++      L        + +YDPTCG+G  
Sbjct: 189 EYLISQFAANAGKKAGEFYTPQQVSKILAKIVTHEKPDL--------KNVYDPTCGSGSL 240

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           +              K   + + +GQEL   T  +    ML+  L     R    +IQ  
Sbjct: 241 MLRV----------AKESNVRLFYGQELTTTTFNLARMNMLLHDL-----RYTDFDIQNE 285

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +TL        RF   ++NPP+   W  D   ++ E  +   GR    L   S     F+
Sbjct: 286 NTLENPKHVDMRFEAVVANPPYSANWSADAKYLDDERFSDY-GR----LAPKSKADFAFV 340

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLF 398
            H+ ++L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F
Sbjct: 341 QHMIHQL----DDNGTMAVVLPHGVLFRGGA---EGVIRQFLIEDKNYLDAVIGLPANVF 393

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + +   +KT +    V  I+A++ +      GK +  + D+   +I+D Y +
Sbjct: 394 FGTSIPTCVLVF--KKTRKEDADVIFIDASNEFEK----GKNQNNLTDENVDKIVDTYKT 447

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE  + +S              +  P R     ++  L  LEA                 
Sbjct: 448 REKIERYSYAASLEEIKENDYNLNIP-RYVDTFNEEELVDLEAVQVRLNEIDQEIEEIDR 506

Query: 518 ILKPMMQQIY 527
            L+   +++ 
Sbjct: 507 ELEQYFKELG 516


>gi|78773893|gb|ABB51238.1| type I RM system M subunit [Arthrospira platensis]
          Length = 814

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 104/483 (21%), Positives = 194/483 (40%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W   ++L G    + +   +L    L+ +                   
Sbjct: 1   MAVKKTQLYSSLWAGCDELRGGMDASQYKDYVLTLLFLKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
            +       +   G +F       L  L       + +   I + +   + K + +  DF
Sbjct: 45  YAGKPNPLIIVPQGAAFS-----DLVKLKGDKEIGDKINKVIDNLAAENDLKGVIDIADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L ++   F GI L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMVDRLSRLVGIFEGINLSANRADGDDLLGDAYEYLMRNFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   +L  P             T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRVVAKVLAIP------PETRQDATVYDPTCGSGSLLLKVAD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
            P  L  +GQE++  T+++    M +           +  I + +TL+   +       K
Sbjct: 204 APNGLSIYGQEMDNATYSLARMNMFMHN-------HPTAEIWKDNTLAAPYWKEKDGSLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF + ++NPPF  K   +     +     E  RFG G+P   +G   FL+H+   L+   
Sbjct: 257 RFDFAVANPPFSYKSWSNGVDTAR----DEFNRFGYGVPPAKNGDYAFLLHILKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA++L    LF G A   E+ IR+ L+    I+ I+ LP +LF+ T I   + +L
Sbjct: 312 ---GKAAVILPHGVLFRGNA---EATIRQNLVTQGYIKGIIGLPPNLFYGTGIPACIIVL 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
              +   R G + +I+A+  +     +G K R +      +I+D++ ++    ++SR++ 
Sbjct: 366 DKAEAATRDG-LFMIDASKGFI---KDGNKNR-LRSQDIHKIVDVFNNQLEIPRYSRLVS 420

Query: 470 YRT 472
              
Sbjct: 421 LEE 423


>gi|329313150|gb|AEB87563.1| Type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 518

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  F +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGHFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|311278008|ref|YP_003940239.1| type I restriction-modification system, M subunit [Enterobacter
           cloacae SCF1]
 gi|308747203|gb|ADO46955.1| type I restriction-modification system, M subunit [Enterobacter
           cloacae SCF1]
          Length = 535

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/545 (17%), Positives = 192/545 (35%), Gaps = 78/545 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----Y 59
              + + L   +W  A+ L G     +F    L F   + L        + +  +    Y
Sbjct: 6   EAQNLSELQGRLWNIADTLRGKMNADEFRDYCLGFIFYKYLSEKFVAYANKILAEDGIQY 65

Query: 60  LAFGGSNIDLESFVKVAGYS--------------FYNTSEYSLSTLGSTN---TRNNLES 102
                 +   +  V                    F+  +E        T       +L +
Sbjct: 66  NELTAEHPAYQDIVDAVKEDSIQTLGYFLPPTDLFHTMAERVAKDPKGTGTGFILEDLAT 125

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTV 150
            + +   +        DFS+    L+            K  L+ K+      +  +    
Sbjct: 126 TLRNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVVTELDKLSFNLSEA 185

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++ + YE+LI +F S   + A +F TP+ V  L   ++              ++ +Y
Sbjct: 186 SSDILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKL--------KLKNVY 237

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L              +   +   +GQE+   T+ +    M++  +      
Sbjct: 238 DPTCGSGSLL---------LRVKREASSVGKIYGQEMNRTTYNLARMNMILHGVHYADFE 288

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I Q  TL     T  +F   ++NPPF  KW      +  +            L  
Sbjct: 289 -----IIQEDTLEHPQHTHLKFDAIVANPPFSAKWSASPLFMNDDRFAQY-----GKLAP 338

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389
            S   M F+ H+ + LE      G  A+VL    LF G A   E  IR++++E  + I+A
Sbjct: 339 SSKADMAFVQHMFHHLEDD----GTMAVVLPHGVLFRGAA---EGHIRQFMIEKLNCIDA 391

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++F+ T+I T + +L  RK  +    +  I+A++ +  ++     +  +  +  
Sbjct: 392 VIGLPANIFYGTSIPTCVLVL--RKCRKHNDSILFIDASNDFEKVKT----QNRLLPEHI 445

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +I D Y   +   K+S +            +  P    ++        ++ +   +++ 
Sbjct: 446 DKIADTYNDWKALEKYSHIATLEEIRNNDYNLNIP---RYVDTFEAEEEIDLNAVAQEIR 502

Query: 509 PLHQS 513
            L   
Sbjct: 503 DLEGK 507


>gi|315038269|ref|YP_004031837.1| type I restriction-modification system, M subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|312276402|gb|ADQ59042.1| type I restriction-modification system, M subunit [Lactobacillus
           amylovorus GRL 1112]
          Length = 557

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 116/515 (22%), Positives = 199/515 (38%), Gaps = 79/515 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------ 48
           M E T +   L + ++  A+ L       ++   +L     + L   L            
Sbjct: 1   MAE-TLTKTELEHALFSAADSLRSKMDANEYKNYLLGIIFYKYLSDKLLYIAAESLDPNF 59

Query: 49  -EPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEY-------------------S 87
            +       +K+      N D    +     +  Y  S                     +
Sbjct: 60  IDDRDDLPLDKWQKMYAENADDAELLSDLKATLMYLISPEHTFTYIFNEINGEARTKDGN 119

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICK---NFS 141
           L T   ++  +     I S S +   +F+D    S        ++A  + ++ K     +
Sbjct: 120 LKTFQISDLADAFND-IESTSKDFDGLFKDVQLYSQKLGSNAQKQADTISEVIKSIGKIN 178

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            IE       +  + + YE+LIR F SE  + A +F TP+ V  L T L L         
Sbjct: 179 LIEQDDQNNKNDTLGDAYEYLIREFASESGKKAGEFYTPQKVSELLTKLTLVGKK----- 233

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 T+YDP  G+G  L +   ++ D       P  ++ +GQE+   T  +    M++
Sbjct: 234 -YPEGMTVYDPAMGSGSLLLNFKKYIKDFAG--GDPNKVIYYGQEINISTFNLARMNMIL 290

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             ++S      +++++QG TL  D     +  F   + NPP+  KW  +K  ++      
Sbjct: 291 HGVDS-----GNQHLRQGDTLDADWPPISQTMFDAVVMNPPYSLKWSANKGFLQ------ 339

Query: 320 ELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              RF P   L   S     FL+H    L+      G  AIVL    LF G A   E +I
Sbjct: 340 -DPRFSPYGVLAPKSKADYAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKI 391

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LLEN  I+A++ LP +LF+ T+I T + +L   K       V  I+A+  +   +N 
Sbjct: 392 RKKLLENGSIDAVIGLPANLFYNTSIPTVILVLKKNKENR---DVIFIDASKGFEKKKN- 447

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
              +  + ++  ++ILD Y   E+ +    L    
Sbjct: 448 ---QNELREEDIQKILDTYEKHEDVERYAHLAKYD 479


>gi|94989256|ref|YP_597357.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS9429]
 gi|94993144|ref|YP_601243.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS2096]
 gi|94542764|gb|ABF32813.1| type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS9429]
 gi|94546652|gb|ABF36699.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS2096]
          Length = 526

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 119/502 (23%), Positives = 195/502 (38%), Gaps = 76/502 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M E T S   L   +W +A+ L G     D+   +L     + L           LE   
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLIAVCDNLEEHF 57

Query: 53  SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
           +   +       A+    +  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTDAQKIFEDAYQDQGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +             +  +GQE+   T+ +    M++  +        ++
Sbjct: 228 GSGSLLLNAKKYSHQ-------SDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQ 275

Query: 275 NIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPK 330
           ++    TL  D  T +   F   L NPP+  KW      +          RF   G L  
Sbjct: 276 HLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I
Sbjct: 329 KSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTI 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D   +
Sbjct: 382 IGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDSHIK 434

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           ++L+ Y SR+N      L    
Sbjct: 435 KVLNAYKSRDNSDKFSYLASFD 456


>gi|302332146|gb|ADL22339.1| Type I restriction-modification system methyltransferase subunit,
           HsdM_1 [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 518

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWIADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I++ Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDAFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|253756219|ref|YP_003029359.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
 gi|251818683|emb|CAZ56518.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
          Length = 529

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/572 (18%), Positives = 204/572 (35%), Gaps = 91/572 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52
            + +  ++ N IW  A +L G+   +++   IL F   R L        +E         
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106
             V++ Y      N  +E     A +  Y      + + L +         ++ ++    
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ N           + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++    +           ++YDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYSNMILNN 287

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D   G         + F   ++NPP+  KW       +      +  RF
Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335

Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L   S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++
Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + ++A++ LP +LF+ T I T + +    +  +    V  I+A+  +      GK + 
Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            ++DD   +I++ Y +R+                   +   +   + L+         + 
Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492

Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532
               L  + Q    D   ++ +  +I      
Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524


>gi|93005780|ref|YP_580217.1| type I restriction-modification system, M subunit [Psychrobacter
           cryohalolentis K5]
 gi|92393458|gb|ABE74733.1| type I restriction-modification system, M subunit [Psychrobacter
           cryohalolentis K5]
          Length = 809

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 103/506 (20%), Positives = 199/506 (39%), Gaps = 75/506 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  + + +W +  +L G    + +   +L    ++ +                   
Sbjct: 1   MALKKTEIYSTLWASCNELRGGMDASQYKDYVLTMLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDN--AKAIFEDFDF 120
             +      V   G SF       +  L         ++  IA  ++    + + +  DF
Sbjct: 45  YKDDAFGDIVVPEGGSF-----DDMVALKGDKEIGEKVDKIIAKLAEANGLRGVIDVADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L         L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-EKLGTGKEHVDRLSKLIGIFEGLDLSGNRADGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++   D+           T+YDP CG+G  L    +         +
Sbjct: 159 QFYTPSEVSRILAKIIGVDDNTPLDA------TVYDPACGSGSLLLKVSD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291
            P  L  +GQE++  T A+    M++             +I +G+TLS   F      K 
Sbjct: 204 APRGLTIYGQEMDFATTALAKMNMILHGATG-------ADIYKGNTLSSPHFVEGNQLKT 256

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F + ++NPPF  K            ++ E  RF  G+P   +G   FL+H+   L+    
Sbjct: 257 FDFIVANPPFSNKN----WTSGLNPESDEFDRFTWGIPPEKNGDYAFLLHIIKSLKST-- 310

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G  A++L    LF G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++ 
Sbjct: 311 --GVGAVILPHGVLFRGNA---EAHIRQNLIKQGYIKGIIGLPANLFYGTGIPACVIVID 365

Query: 412 NRKTE-ERRGK--VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
               +   +G   + +++A+  +     +G K R +      +I+D++ S+ N   +SRM
Sbjct: 366 KNTAQSRAKGDAGLFMVDASRGYM---KDGNKNR-LRSQDIHKIVDVFNSQLNLTGYSRM 421

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKT 493
           ++          +  P  +   +D+ 
Sbjct: 422 VELDEIIDNDYNLNIPRYIDASIDED 447


>gi|302024399|ref|ZP_07249610.1| type I restriction-modification system, M subunit [Streptococcus
           suis 05HAS68]
 gi|330833400|ref|YP_004402225.1| type I restriction-modification system, M subunit [Streptococcus
           suis ST3]
 gi|329307623|gb|AEB82039.1| type I restriction-modification system, M subunit [Streptococcus
           suis ST3]
          Length = 529

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/572 (18%), Positives = 204/572 (35%), Gaps = 91/572 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52
            + +  ++ N IW  A +L G+   +++   IL F   R L        +E         
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106
             V++ Y      N  +E     A +  Y      + + L +         ++ ++    
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ N           + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++    +           ++YDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVSYSNMILNN 287

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D   G         + F   ++NPP+  KW       +      +  RF
Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335

Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L   S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++
Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + ++A++ LP +LF+ T I T + +    +  +    V  I+A+  +      GK + 
Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            ++DD   +I++ Y +R+                   +   +   + L+         + 
Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492

Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532
               L  + Q    D   ++ +  +I      
Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524


>gi|295132749|ref|YP_003583425.1| type I restriction-modification system, M subunit [Zunongwangia
           profunda SM-A87]
 gi|294980764|gb|ADF51229.1| type I restriction-modification system, M subunit [Zunongwangia
           profunda SM-A87]
          Length = 531

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 115/560 (20%), Positives = 200/560 (35%), Gaps = 87/560 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPTR 52
           M+E    A  L   +W  A  L G     D+   IL F   + L           LEP  
Sbjct: 1   MSEDQKKA--LEKQLWAIANLLRGKMDADDYRNYILGFIFFKYLSEKLHIYADRILEPDG 58

Query: 53  SAVREKYLAFGGSNIDLESFVKV----AGYSFYNTSEYSLSTLGSTN------------- 95
               E         + +E+  K      GY    +  ++       N             
Sbjct: 59  LKYTEIDENSEEGKVYIEAIKKACIKNIGYFLKPSELFTSIANKGANLTGIATNENQEAT 118

Query: 96  ---TRNNLESYIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNF 140
                 +LE  + +   +      + DF      L+            K  L+ KI  + 
Sbjct: 119 QFFILEDLEHILNNIEQSTMGTDSEDDFVRLFEDLDLTSSKLGRTVKAKNELIAKILAHL 178

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           + I+   +     V+ + YE+LI +F     + A +F TP+ V  +   ++         
Sbjct: 179 NQIDFQLENAESDVLGDAYEYLIGQFAENAGKKAGEFYTPQQVSTILAKIV--------T 230

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                I+++YDPTCG+G  L      V D G           +GQEL   T+ +    M+
Sbjct: 231 SRKKRIKSVYDPTCGSGSLLLRVAKEVEDVG---------YFYGQELNRTTYNLARMNMI 281

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +          +I+Q  TL +      +    ++NPPF  KW         +  +  
Sbjct: 282 LHDVHF-----SKFDIKQEDTLEEPQHLDVQAEAIVANPPFSAKWSAKGVFSSDDRFSQY 336

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  L   S     F+ H+ + L+      G  A VL    LF G A   E  IR++
Sbjct: 337 -----GKLAPKSKADFAFVQHMIHHLDES----GIMATVLPHGVLFRGAA---EGHIRKY 384

Query: 381 LLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E+ + I+A++ LP ++FF T I T + ++  +K  E    V  I+A+  +     +G 
Sbjct: 385 LIEDRNYIDAVIGLPANIFFGTGIPTCILVI--KKCREIDDDVLFIDASKGFE---KQG- 438

Query: 440 KRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           K  ++  +   +I+D Y  R+   KFS              +  P    ++        +
Sbjct: 439 KDNVLLPEHIEKIVDTYTERKELDKFSYCASLAEIKENDYNLNIP---RYVDTFEEEEPV 495

Query: 499 EADITWRKLSPLHQSFWLDI 518
           + +   ++L  L        
Sbjct: 496 DIEAVAKELKALETEIQQTD 515


>gi|91773784|ref|YP_566476.1| type I restriction-modification system, M subunit [Methanococcoides
           burtonii DSM 6242]
 gi|91712799|gb|ABE52726.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 554

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/570 (18%), Positives = 199/570 (34%), Gaps = 108/570 (18%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----------K 58
             L   +W  A +L G     +F   IL F   + L   +E     + +          +
Sbjct: 7   KQLEQQLWNIANELRGKMNADEFRDYILGFIFYKYLSNKIEIYADEILKPDGIAFKDIKE 66

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--------------------------- 91
               G   I+  S   V    ++       S +                           
Sbjct: 67  DTELGKEFIEAISEASVEKLGYFLKPSELFSEVARRGSSSYSASSGSSNYSNSSLSVEPF 126

Query: 92  --GSTNTRNNLESYIASF-SDNAKAIFEDF-----------DFSSTIARLE--------- 128
             G         SY   F  ++ + I  +            DF +    ++         
Sbjct: 127 VTGQNAMAVAESSYGDEFILEDLQGILNNIQSSTMGTESEDDFENLFEDMDLNSSKLGKT 186

Query: 129 ---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
              +  L+ K+  +   I+   +     V+ + YE+LI +F S   + A +F TP+ V  
Sbjct: 187 PAARNALISKVLSHLDKIDFQLEHTELDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVST 246

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   L+              +R++YDPTCG+G  L      V D  +          +GQ
Sbjct: 247 ILAKLVTTGKK--------RLRSVYDPTCGSGSLLLRVAREVEDVSA---------FYGQ 289

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL   T+ +    M++  +          +I+Q  TL      G +F   ++NPPF  +W
Sbjct: 290 ELNRTTYNLARMNMILHNVH-----YRKFDIKQEDTLEYPQHLGMQFEAIVANPPFSAQW 344

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +      E  +         L   S     F+ H+ + L       G  AIVL    L
Sbjct: 345 SANPLFSSDERFSQY-----GKLAPKSKADYAFVQHMIHHLAE----NGSMAIVLPHGVL 395

Query: 366 FNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           F G A   E  IR++L+E  + ++A++ LP ++F+ T+I T + +   +K  E    +  
Sbjct: 396 FRGAA---EGHIRQFLIEEKNYLDAVIGLPANVFYGTSIPTCVLVF--KKCRENPDDILF 450

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRP 483
           I+A+  +  ++     +  +      +I+D Y +R+  + +S +            +  P
Sbjct: 451 IDASQDYEKVKT----QNQLRPCDIDKIVDTYRNRKEIEKYSHVASLDEIKENDYNLNIP 506

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQS 513
               ++        ++ D     L  L + 
Sbjct: 507 ---RYVDTFEEEEPIDIDAVAASLLELDEK 533


>gi|30248402|ref|NP_840472.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Nitrosomonas europaea ATCC 19718]
 gi|30138288|emb|CAD84296.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Nitrosomonas europaea ATCC 19718]
          Length = 571

 Score =  299 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 109/587 (18%), Positives = 193/587 (32%), Gaps = 119/587 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----------- 57
             L   +W  A+ L  +     +  V+L    L+ +  A E  +  +RE           
Sbjct: 10  NDLEKKLWTAADKLRSNLDAAVYKHVVLGLIFLKYVSDAFEERQRELREQFTNPQHDYYM 69

Query: 58  -----------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----------- 95
                      +Y     + +++  +       F+   E    TL               
Sbjct: 70  DPEEYGGAGTPEYEDNIAAELEVRDYY-TEKNVFWVPVEARWQTLRDCAQLPPKAALPWN 128

Query: 96  ---------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
                            +N    I   +   K +    DF+    +L+ +  L ++   F
Sbjct: 129 KPGKDEPEEMRSVGWLIDNAMEAIERENIRLKNVLNK-DFARV--QLDSSK-LGELIALF 184

Query: 141 SGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           S  +                 ++ ++YE+ + +F     +    + TP+ +V L   +L 
Sbjct: 185 SDTDFAAKTYKGQPLSLQSRDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEML- 243

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPE 250
                           +YDP  G+GGF   +   +   G          +  +GQE  P 
Sbjct: 244 ----------QPFKGRVYDPAMGSGGFFVQSEEFIGQHGGKAANGKSGQISVYGQESNPT 293

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +    M IR ++ +     +       TL  DL    R  + ++NPPF  K      
Sbjct: 294 TWRLAAMNMAIRGIDFNFGSGPA------DTLLNDLHPDLRADFVMANPPFNMKEW---- 343

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 K     R+  G P   + +  +L H+   L      G  A ++ + S   N   
Sbjct: 344 ---WNEKLANDPRWIAGTPPQGNANFAWLQHMLWHLAPT---GSMALLLANGSMSSN--- 394

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGK 421
            + E EIR+ L E+D +E +VALP  LF  T I   +W L+          +K  +RRG+
Sbjct: 395 TNSEGEIRKRLTEDDYVECMVALPGQLFTNTQIPACIWFLTRDKQNGFALDKKKRDRRGE 454

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-- 479
              I+A  +           R    D  ++I D + + + G     +     G+ +    
Sbjct: 455 FLFIDARQMGYMKDRV---LRDFTVDDIQKIADTFHAWQQGDGYEDVP----GFCKSASL 507

Query: 480 --------VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
                   VL P R     ++       AD   R  + L + F    
Sbjct: 508 EEVRKHEHVLTPGRYVGTAEQEEDGEPFADKMQRLTAQLAEQFAESA 554


>gi|82750144|ref|YP_415885.1| type I site-specific deoxyribonuclease [Staphylococcus aureus
           RF122]
 gi|82751391|ref|YP_417132.1| type I restriction-modification system M subunit [Staphylococcus
           aureus RF122]
 gi|82655675|emb|CAI80072.1| type I site-specific deoxyribonuclease [Staphylococcus aureus
           RF122]
 gi|82656922|emb|CAI81357.1| type I restriction-modification system M subunit [Staphylococcus
           aureus RF122]
          Length = 518

 Score =  299 bits (767), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 118/552 (21%), Positives = 206/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDSKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G     E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGA---SEGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I++ Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|223934049|ref|ZP_03626001.1| type I restriction-modification system, M subunit [Streptococcus
           suis 89/1591]
 gi|223897276|gb|EEF63685.1| type I restriction-modification system, M subunit [Streptococcus
           suis 89/1591]
          Length = 529

 Score =  299 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 107/572 (18%), Positives = 205/572 (35%), Gaps = 91/572 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52
            + +  ++ N IW  A +L G+   +++   IL F   R L        +E         
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106
             V++ Y+     N  +E     A +  Y      + + L +         ++ ++    
Sbjct: 61  ETVQDAYVREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ N           + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVARAKSLNSIVKLIDSIEYKNDEGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++    +           ++YDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVSYSNMILNN 287

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D   G         + F   ++NPP+  KW       +      +  RF
Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335

Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L   S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++
Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + ++A++ LP +LF+ T I T + +    +  +    V  I+A+  +      GK + 
Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            ++DD   +I++ Y +R+                   +   +   + L+         + 
Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492

Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532
               L  + Q    D   ++ +  +I      
Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524


>gi|330991916|ref|ZP_08315865.1| Putative type I restriction enzyme HindVIIP M protein
           [Gluconacetobacter sp. SXCC-1]
 gi|329760937|gb|EGG77432.1| Putative type I restriction enzyme HindVIIP M protein
           [Gluconacetobacter sp. SXCC-1]
          Length = 536

 Score =  299 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 101/527 (19%), Positives = 186/527 (35%), Gaps = 68/527 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG 77
            A+ L  + + +D+  V L    LR +  A E    A+   +     +    E     A 
Sbjct: 40  AADKLRKNLEPSDYKHVTLGLIFLRYISTAFEAHHEALL--HDDREAAEDPDEYL---AE 94

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDN-AKAIFEDFDFSSTIARLEK 129
             F+       S L +    + + +        I   + +  K +         +     
Sbjct: 95  NIFWVPEAARWSHLQANARSSAIGTMIDDAMLAIEQANPDQLKNVLPKDYGRREL----D 150

Query: 130 AGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           + +L ++    S I +         V+  +YE+ +  F         +F TP  VV    
Sbjct: 151 SVMLGELVDLISEIGMGGSEDQARDVLGRVYEYFLGGFAGAEGRRGGEFYTPSSVVRTLV 210

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++L                 +YDP CG+GG    +   V   G        +  +GQE  
Sbjct: 211 SML-----------EPYKGRVYDPCCGSGGMFVQSEQFVESHG---GKLGDIAIYGQESN 256

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNPPFGKKWE 306
             T  +    + +R + +D        I+  +  +  +D     RF   L+NPPF     
Sbjct: 257 YTTWRLAKMNLAVRGIGAD--------IRWNNEGSFLRDALKDLRFDTILANPPFNVSEW 308

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                        E  R+  G P   + +  +L H+   L       G A +VL++  + 
Sbjct: 309 -------WNASLEEDPRWQYGKPSAGNANYAWLQHILWHLAPD----GMAGVVLANGSMS 357

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKV 422
           +    +GE +IRR ++  D+++ +VALP  LF+ T I   LW L+  K      +RRG++
Sbjct: 358 SD--QNGEGDIRRRMVGADVVDCMVALPGQLFYSTQIRACLWFLARNKNPKGWRDRRGEI 415

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-IKVL 481
             I+A  L   +      RR + D     I   Y +    K +        G+ + + + 
Sbjct: 416 LFIDARKLGIMVDRT---RRELTDADVALIAGTYHAWRGEKGAGPYGDIP-GFCKSVTLE 471

Query: 482 RPLRMSFILDKTGL----ARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              R  F+L           +E  I + +   + +       +   +
Sbjct: 472 DVERHGFVLTPGRYVGKKKTVEDSIPFAERFAVLEKTLQAQFRQGAE 518


>gi|146321640|ref|YP_001201351.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 98HAH33]
 gi|253752459|ref|YP_003025600.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|253754285|ref|YP_003027426.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|145692446|gb|ABP92951.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 98HAH33]
 gi|251816748|emb|CAZ52390.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|251820531|emb|CAR47286.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|292559063|gb|ADE32064.1| Type I restriction-modification system M subunit [Streptococcus
           suis GZ1]
 gi|319758863|gb|ADV70805.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis JS14]
          Length = 529

 Score =  299 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 107/572 (18%), Positives = 204/572 (35%), Gaps = 91/572 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52
            + +  ++ N IW  A +L G+   +++   IL F   R L        +E         
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106
             V++ Y      N  +E     A +  Y      + + L +         ++ ++    
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ N           + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVVRAKSLNSIVKLIDSIEYKNDEGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++    +           ++YDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKIVTLGLE-----KSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYSNMILNN 287

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D   G         + F   ++NPP+  KW       +      +  RF
Sbjct: 288 A-----DTLESDWPDGVDELGIDQPRSFDAVVANPPYSAKW-------DNRESKLKDPRF 335

Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L   S     F++H    L    N  G  AIVL    LF G A   E  IR+ ++
Sbjct: 336 MEYGKLAPASKADFAFILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLII 388

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + ++A++ LP +LF+ T I T + +    +  +    V  I+A+  +      GK + 
Sbjct: 389 EKNYLDAVIGLPANLFYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQN 441

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            ++DD   +I++ Y +R+                   +   +   + L+         + 
Sbjct: 442 HLSDDMVEKIVETYHNRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEE 492

Query: 503 TWRKLSPLHQSFWLD--ILKPMMQQIYPYGWA 532
               L  + Q    D   ++ +  +I      
Sbjct: 493 EEIDLGQVTQQLEQDRLEIRALEDKIRQQLKT 524


>gi|328676719|gb|AEB27589.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida Fx1]
          Length = 522

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 97/567 (17%), Positives = 216/567 (38%), Gaps = 71/567 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            +   +  S+   +W +A  L G  + +++  ++L    L+ +    E  R  +  +   
Sbjct: 4   AKNKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAE--- 60

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
              + ID+  F       FY   E   S +     ++++        S I   + + K  
Sbjct: 61  GKEAFIDMVEFY-TMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSLKGA 119

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS     + K   L  +    + I    D   + ++  +YE+ + +F     +G 
Sbjct: 120 LPDNYFSRLGLDVSK---LSSLIDTINNINTIADKG-NDIVGRVYEYFLSKFAIAEGKGK 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ +V+L   ++                 +YDP CG+GG    ++  +     + 
Sbjct: 176 GEFYTPKSIVNLIANMI-----------EPYKGKIYDPACGSGGMFVQSIKFIEAHKGN- 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T+ +    + IR + ++     +       T  KD     +  +
Sbjct: 224 --KKDISIYGQEYTGTTYKLAKMNLAIRGISANLGDVPA------DTFFKDQHPDLKADF 275

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF       +      ++  +  R+ G  +P  S+ +  +++++ +KL    +  
Sbjct: 276 IMANPPFN------QKDWRGANELLDDPRWAGYDVPPKSNANYGWILNIVSKL----SQN 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  +L++  L  G     E +IR+ L+ENDL+EAI+ LP ++F+ TNI+  +WIL+  
Sbjct: 326 GVAGFILANGALSGGGE---EYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWILNAN 382

Query: 414 KTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           K +             +R  ++  ++             K    +++  ++I D Y + +
Sbjct: 383 KKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEK---KFIQFDEENIQEISDTYHTWQ 439

Query: 461 -NGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            + +  + +      Y + + +       + L  +                  ++   + 
Sbjct: 440 SDKEAYQDIP----EYCKSVTLEEVRAKDYSLVPSKYIEFVNRDENIDFDEKMKNLQTEF 495

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEA 545
            + + Q+        +  KE     + 
Sbjct: 496 RELLKQEEQSKQELLTVFKELGYEIKL 522


>gi|330684125|gb|EGG95874.1| type I restriction-modification system, M subunit [Staphylococcus
           epidermidis VCU121]
          Length = 518

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 116/546 (21%), Positives = 204/546 (37%), Gaps = 70/546 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVRE 57
                L   +W  A DL G+   ++F   IL     R L          AL        E
Sbjct: 9   QQQQELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEAEVADALADEDVTYEE 68

Query: 58  KYLAFGGSNIDLESFVKVAGY------------SFYNTSEYSLSTLGSTNTRNNLESYIA 105
            +          E  ++  GY                   + +  L     +    +   
Sbjct: 69  AWEDDEYREDLKEELLENVGYYIEPQDLFSSMVKEIENQRFDIEHLAQAIRKVETSTLGQ 128

Query: 106 SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
              ++   +F D D SST  RL     ++  L+ K+  + + +      +   ++ + YE
Sbjct: 129 DSEEDFIGLFSDMDLSST--RLGNTVKDRTALIGKVMIHLAELPFVHSDMEIDMLGDAYE 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI RF +   + A +F TP+ V  +   ++    D L        R +YDPTCG+G  L
Sbjct: 187 FLIGRFAANAGKKAGEFYTPQQVSKILAKIVTQGKDQL--------RNVYDPTCGSGSLL 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                         K   +   +GQE    T+ +    ML+  +     R  + +IQ   
Sbjct: 239 LRVG----------KETKVYRYNGQERNNTTYNLARMNMLLHDV-----RYENFDIQNAD 283

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL    F  ++F   ++NPP+  KW  D    + E  +         L   S     F+ 
Sbjct: 284 TLENPAFMEEKFDAVVANPPYSAKWSADSQFNDDERFSNY-----GKLAPKSKADYAFIQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ + L+      G  A+VL    LF G A   E  IR++L+E  + I+A++ LP ++F+
Sbjct: 339 HMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYIDAVIGLPANIFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +   +K  E    V  I+A+  +      GK +  + DD   QI+D Y  R
Sbjct: 392 GTSIPTCILVF--KKCREANDNVVFIDASQSFEK----GKNQNHLTDDDVNQIVDTYSKR 445

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E   K+S +            +  P  +    ++  +   +     + +         +I
Sbjct: 446 ETIDKYSYVASLDDIKDNDYNLNIPRYVDTFEEEEPIDLDQVQQDLKNIDKEIADVESEI 505

Query: 519 LKPMMQ 524
            + + +
Sbjct: 506 NEYLKE 511


>gi|319945007|ref|ZP_08019269.1| type I modification enzyme [Lautropia mirabilis ATCC 51599]
 gi|319741577|gb|EFV94002.1| type I modification enzyme [Lautropia mirabilis ATCC 51599]
          Length = 571

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 109/600 (18%), Positives = 198/600 (33%), Gaps = 115/600 (19%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----------- 57
             L   +W  A+ L  +     +  ++L    L+ +  A E  +  +RE           
Sbjct: 10  NDLEKKLWTAADKLRSNLDAAVYKHIVLGLIFLKYVSDAFEERQRELREQFTNPDHDYYM 69

Query: 58  -----------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----------- 95
                      +Y     + +++  +       F+   E    TL               
Sbjct: 70  DPDEYGGAGTLEYEDNIATELEVRDYY-TEKNVFWVPLEARWQTLRDCAQLPPKAALPWN 128

Query: 96  ---------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
                            +N    +   +   K +    DF+    +L+ +  L  +  +F
Sbjct: 129 KPGKDEPEEMRSVGWLIDNAMEAVERENARLKNVLNK-DFARV--QLDSSK-LAGLISHF 184

Query: 141 SGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           S  +           D     ++ ++YE+ + +F     +    + TP+ +V L   +L 
Sbjct: 185 SDTDFSAKEYKGQPLDLKSKDILGHVYEYFLGQFALAEGKKGGQYYTPKSIVTLIVEML- 243

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPE 250
                           +YDP  G+GGF   +   +   G          +  +GQE  P 
Sbjct: 244 ----------QPFKGRVYDPAMGSGGFFVQSEEFIEQHGGKATNGKSGQISVYGQESNPT 293

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +    M IR ++ +     +       TL  DL    R  + ++NPPF  K      
Sbjct: 294 TWRLAAMNMAIRGIDFNFGSGPA------DTLLNDLHPDLRADFVMANPPFNMKEW---- 343

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 K     R+  G P   + +  +L H+   L      G  A ++ + S   N   
Sbjct: 344 ---WNEKLAADPRWIAGTPPQGNANFAWLQHMLWHLAPT---GSMALLLANGSMSSNTNN 397

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRGK 421
              E EIR+ L+E+D +E +VALP  LF  T I   +W L+          +K  +RRGK
Sbjct: 398 ---EGEIRKRLVEDDYVECMVALPGQLFTNTQIPACIWFLTRDKQNGFALDKKKRDRRGK 454

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-------FSRMLDYRTFG 474
              I+A  +           R    +  ++I D + + + G+       F          
Sbjct: 455 FLFIDARQMGYMKDRV---LRDFTVEDIQKIADTFHAWQQGEGYEDVPGFCHSAKLDEIR 511

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI--LKPMMQQIYPYGWA 532
                VL P R     ++       A+   R  + L + F         + + +   G+A
Sbjct: 512 KHEH-VLTPGRYVGAAEQEDDGEPFAEKMQRLTAQLAEQFVESAKLEAEIKKNLAGLGYA 570


>gi|28377765|ref|NP_784657.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus plantarum WCFS1]
 gi|28270598|emb|CAD63502.1| site-specific DNA-methyltransferase (adenine-specific), HsdM
           subunit [Lactobacillus plantarum WCFS1]
          Length = 528

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/487 (22%), Positives = 199/487 (40%), Gaps = 71/487 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL-A 61
           E     A L   +W  A DL G+   +++   IL     R L   +E   + + +     
Sbjct: 5   EQAEQQAELQKRLWAVANDLRGNMDASEYRNYILGLIFYRFLSEKVENYANELLQDDDVD 64

Query: 62  FGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLG-------------STNTRNNLESY 103
           F  +  D +    +         F+    Y  +T+                       S 
Sbjct: 65  FADAEQDADLMQDLKDEVIDVLGFFIEPRYLFTTMVKKINAGDFDVEMLQNAINEVQNST 124

Query: 104 IASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +   S+N  K +FED D     +RL     +++ L+ K+  + S I+     +   ++ +
Sbjct: 125 LGKESENDFKGLFEDLDL--QSSRLGNTVAKRSELIAKVILSLSNIDFGEQDIKIDILGD 182

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F +   + A +F TP+ V  L   ++    D         ++T+YDPT G+G
Sbjct: 183 AYEYLIGQFAASAGKKAGEFYTPQQVSKLLARIVTAGKD--------RLKTVYDPTMGSG 234

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L    N+            I   +GQE+   T+ +    +L+  +  +       +++
Sbjct: 235 SLLLQLGNYA----------TIGNYYGQEINGTTYNLARMNLLMHEVSYNR-----FDLR 279

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           QG TL +D F    F   ++NPP+  KW  D    ++        R        S     
Sbjct: 280 QGDTLEEDHFDDLTFDAVVANPPYSAKWNPDDKLDDERF------RKYGKTAPKSKADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTD 396
           F+ H+   L       G  A+VL    LF G A   E +IR++++E+D +++A++ LP +
Sbjct: 334 FVEHMLYHLNNE----GTMAVVLPHGVLFRGAA---EGKIRQYMIEHDNVLDAVIGLPAN 386

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+I T + +    +    R  +  I+A++ +      GK +  + D+   +IL+  
Sbjct: 387 LFYGTSIPTVVLVFKKGRE---RQDIFFIDASNDFEK----GKNQNNLTDENVDKILETL 439

Query: 457 VSRENGK 463
             RE+  
Sbjct: 440 EKREDVD 446


>gi|35381318|gb|AAQ84546.1| type I restriction-modification enzyme subunit M [Klebsiella
           pneumoniae]
          Length = 877

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/492 (20%), Positives = 190/492 (38%), Gaps = 80/492 (16%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                   L + +W + ++L G    + +   +L    ++ +                  
Sbjct: 56  HMAIKKNELYSCLWASCDELRGGMDASQYKDYVLTLLFMKYVSD---------------- 99

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFD 119
                         G SF       +  L  +      +   I   ++  + K + +  D
Sbjct: 100 KAKGNPYAMIEVPEGASF-----DDMVALKGNKEIGEKINKTIRLLAEANDLKGVIDIAD 154

Query: 120 FSSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGA 174
           F+    +L K       L K+   F G++L  + V  D ++ + YE+L+R F +E  +  
Sbjct: 155 FNDE-DKLGKGKEMIDRLSKLVAIFEGLDLSANRVDGDDLLGDAYEYLMRHFATESGKSK 213

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V  +   ++         +      T+YDPTCG+G  L  A +         
Sbjct: 214 GQFYTPAEVSRILAKVI------GISKETPQDATVYDPTCGSGSLLLKASDEA------- 260

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
             P  L  +GQE++  T A+    M++         + +  I +G+TL+   +       
Sbjct: 261 -GPKGLTIYGQEMDYATSALARMNMILH-------DNATAKIWKGNTLADPHWKDGNDNL 312

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K F + ++NPPF  K          +  N    RF  G P   +G   FL+H+   L+  
Sbjct: 313 KTFDFAVANPPFSNKN----WTSGLDAANDTFDRFVWGTPPEKNGDYAFLLHIIKSLKST 368

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+ A++L    LF G A   E+ IR  LL+   I+ I+ LP +LF+ T I   + +
Sbjct: 369 ----GKGAVILPHGVLFRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIV 421

Query: 410 LSNRKTE--------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +     +        E +  + +I+A+  +     +G K R +      +I+D +   + 
Sbjct: 422 IDKEDAQLRAFNANGESQQGIFMIDASKGFI---KDGNKNR-LRAQDIHKIVDAFNREQE 477

Query: 462 -GKFSRMLDYRT 472
             +FSRM+    
Sbjct: 478 IPRFSRMVPLSE 489


>gi|314950056|ref|ZP_07853344.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
 gi|313643614|gb|EFS08194.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
          Length = 492

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 116/490 (23%), Positives = 195/490 (39%), Gaps = 74/490 (15%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPT 51
           MTE     + SL   +W +A+ L       ++   +L     + L           LE  
Sbjct: 1   MTEQIEKNSKSLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60

Query: 52  RSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYI 104
              + +       AF  ++I  +   ++     Y  +     T       +    LE  +
Sbjct: 61  TDDLNKAQDLYVEAFKDADIKDDLLYELKDEFSYTIAPALTFTAQVAAIHDGSFQLEDLV 120

Query: 105 ASF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
             F      S+N + +FED D  S   +L     ++   +  + K   G+          
Sbjct: 121 QGFRDIEQSSENFENLFEDIDLYSK--KLGSTPQKQNKTIADVMKELEGLN--MAGHAGD 176

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F SE  + A +F TP+ V  L T ++L   +           ++YD T
Sbjct: 177 VLGDAYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKED------KKGFSVYDAT 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +          P  +   GQEL   T+ +    M++  +        +
Sbjct: 231 MGSGSLLLNAKKYSHQ-------PGTISYFGQELNTSTYNLARMNMILHGV-----PIAN 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
           +++    TL +D  T +   F   L NPP+  KW  DK  ++         RF     L 
Sbjct: 279 QHLHNADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD-------DPRFSAYGVLA 331

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+ 
Sbjct: 332 PKSKADFAFLLHGYYHLKDT----GVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDT 384

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + IL   + ++    V  I+A+  +  I+     +  + D   
Sbjct: 385 VIGLPANIFFNTSIPTTVIILKKDRAKK---DVLFIDASQDFEKIKT----QNTLRDYHI 437

Query: 450 RQILDIYVSR 459
             IL+ Y +R
Sbjct: 438 DAILEAYKTR 447


>gi|262369032|ref|ZP_06062361.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii
           SH046]
 gi|262316710|gb|EEY97748.1| type I site-specific deoxyribonuclease [Acinetobacter johnsonii
           SH046]
          Length = 533

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 111/532 (20%), Positives = 208/532 (39%), Gaps = 82/532 (15%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------------LEPTRSAVRE 57
           W  A  L G     +F   IL F   + L                     L+        
Sbjct: 25  WNIANTLRGTMGADEFRDYILGFIFFKYLSEKSVNFANELLDGEDLSFLELDENNPEHVP 84

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  + I    +       F+  +E            ++L + + S   +       
Sbjct: 85  YIEEIKKNAIAEVGYALTPKQLFHTLAE---RGRQGEFILDDLTATLKSIEQSTLGTDSA 141

Query: 118 FDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            DF++    L            ++  L+ K+  +   I+         V+ + YE+LI  
Sbjct: 142 DDFANLFEDLDLNSTKLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYLIGE 201

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP+ V  L   ++    D         +R++YDPTCG+G  L     
Sbjct: 202 FASGAGKKAGEFYTPQTVSTLLAKIVTQGKD--------RLRSVYDPTCGSGSLLLRVKR 253

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V D         + + +GQE+   T+ +    M++  +          +I+Q +TL++ 
Sbjct: 254 EVKD---------VDMIYGQEMNRTTYNLARMNMVLHDVHF-----AKFDIKQENTLTRP 299

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLA 343
               K+F   ++NPPF  KW  D   ++ E       RF     L   S   M F+ H+ 
Sbjct: 300 QHLDKKFDAVVANPPFSAKWSADPLFLQDE-------RFAAYGKLAPSSKADMAFVQHML 352

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402
            +L    +  G  A+VL    LF G   S E  IR++L+E  ++++AI+ LP ++F+ T+
Sbjct: 353 YQL----DDNGTMAVVLPHGILFRG---SSEGVIRQYLIEQMNVVDAIIGLPANIFYGTS 405

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I T + +L  +K+ E+ G +  I+A++ +   +N    +  +  +   +I+  +  REN 
Sbjct: 406 IPTCILVL--KKSREQSGNILFIDASNDFEKQKN----QNKLLPEHLDKIVAAFEKRENI 459

Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           + ++ +   +        +  P    ++      A ++ D   ++L  L Q 
Sbjct: 460 EKYAHVATLQEVKDNDYNLNIP---RYVDTFEAEAEIDLDAIAKQLQALEQD 508


>gi|257880781|ref|ZP_05660434.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,230,933]
 gi|257891263|ref|ZP_05670916.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,231,410]
 gi|257815009|gb|EEV43767.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,230,933]
 gi|257827623|gb|EEV54249.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecium 1,231,410]
          Length = 540

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 120/565 (21%), Positives = 216/565 (38%), Gaps = 75/565 (13%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPT 51
           MTE     + SL   +W +A+ L       ++   +L     + L           LE  
Sbjct: 1   MTEQIEKNSKSLYQALWNSADILRSKMDANEYKSYLLGLVFYKYLSDNMLRYVSVLLEEE 60

Query: 52  RSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYI 104
              + +       AF  ++I  +   ++     Y  +     T       +    LE  +
Sbjct: 61  TDDLNKAQDLYVEAFKDADIKDDLLYELKDEFSYTIAPALTFTAQVAAIHDGSFQLEDLV 120

Query: 105 ASF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
             F      S+N + +FED D  S   +L     ++   +  + K   G+          
Sbjct: 121 QGFRDIEQSSENFENLFEDIDLYSK--KLGSTPQKQNKTIADVMKELEGLN--MAGHAGD 176

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI +F SE  + A +F TP+ V  L T ++L   +           ++YD T
Sbjct: 177 VLGDAYEYLIGQFASESGKKAGEFYTPQPVAKLMTQIVLQGKED------KKGFSVYDAT 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +          P  +   GQEL   T+ +    M++  +        +
Sbjct: 231 MGSGSLLLNAKKYSHQ-------PGTISYFGQELNTSTYNLARMNMILHGV-----PIAN 278

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
           +++    TL +D  T +   F   L NPP+  KW  DK  ++         RF     L 
Sbjct: 279 QHLHNADTLDQDWPTEEPTNFDGVLMNPPYSAKWSADKGFLD-------DPRFSAYGVLA 331

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H    L+      G  AIVL    LF G A   E +IR+ LLEN  I+ 
Sbjct: 332 PKSKADFAFLLHGYYHLKDT----GVMAIVLPHGVLFRGGA---EGKIRKALLENGAIDT 384

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + IL   + ++    V  I+A+  +  I+     +  + D   
Sbjct: 385 VIGLPANIFFNTSIPTTVIILKKDRAKK---DVLFIDASQDFEKIKT----QNTLRDYHI 437

Query: 450 RQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
             IL+ Y +R    K++ + ++         +  P  +    ++  +       + ++  
Sbjct: 438 DAILEAYKTRTIKDKYAYVAEFDEIVENDYNLNIPRYVDTFEEEEVIPLDSVSKSIQETK 497

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAE 533
                   ++   + +       AE
Sbjct: 498 AELAQAETELFNMLKELNGTTEEAE 522


>gi|226225491|ref|YP_002759597.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
 gi|226088682|dbj|BAH37127.1| type I restriction-modification system DNA methylase [Gemmatimonas
           aurantiaca T-27]
          Length = 538

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/562 (20%), Positives = 208/562 (37%), Gaps = 88/562 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MTE   +   L N +WK A+DL G     DF   +L F  LR L    E   R  + + Y
Sbjct: 1   MTE--ANQKQLGNTLWKIADDLRGAMDADDFRDYMLSFLFLRYLSDNYEAAARKELGKDY 58

Query: 60  LAFGGS--------------NIDLESFVKVAGYSFYNT-------SEYSLSTLGSTNTRN 98
              GG               +   E   ++     Y         S  S++   + +   
Sbjct: 59  PDTGGDARKVPLELWYANNRDDIPEFEKQMRRKVHYVIKPAHLWNSVASMARTQNEDLLK 118

Query: 99  NLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
            L+    YI   SF    + +F + D  S   +L     ++   L  + +  +   L+  
Sbjct: 119 TLQEGFKYIETESFESTFQGLFSEIDLGS--PKLGKTYADRNAKLCTVIQKIAE-GLNNF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F +   + A +F TP+ +  + +A++          +   +  
Sbjct: 176 SADVDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLEN 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +    V+               GQE    T+ +    ML+  ++   
Sbjct: 236 VMDFACGSGSLLLNVRKRVSQADGTIG-----RIFGQEKNITTYNLARMNMLLHGVK--- 287

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL  +    +         F   ++NPPF  +W+  +         G+
Sbjct: 288 --DTEFEIFHGDTLLNEWDMLRELNPARKPLFDAIVANPPFSYRWDPGESI-------GD 338

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR 
Sbjct: 339 DVRFKSHGLAPKSAADFAFLLHGFHYLKDE----GVMAIILPHGVLFRGGA---EERIRT 391

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ ++ LP +LF+ T I   + +L   K       V  INA   +      GK
Sbjct: 392 KLLKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAAHFEK----GK 444

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           ++  +  +   +I+D Y  R                RR+++    +  F L+ +    + 
Sbjct: 445 RQNQLKPEHIGKIIDTYQHRTEAPR---------YSRRVEMDEIEKNDFNLNISRY--IS 493

Query: 500 ADITWRKLSPLHQSFWLDILKP 521
             +   ++        L +++ 
Sbjct: 494 TAVAEEEIDLAATHAELAVIED 515


>gi|307710636|ref|ZP_07647069.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK564]
 gi|307618579|gb|EFN97722.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK564]
          Length = 533

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/571 (22%), Positives = 214/571 (37%), Gaps = 73/571 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
             +  E Y  +       E  + V     ++    E + + L          LE     F
Sbjct: 62  LESALEVYRNYYEDAETHEDLLAVMKDELNYSIKPELTFTALVERVNEGTFQLEDLAQGF 121

Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                SD     +FED D  S   +L     ++   +  + K  + +++        ++ 
Sbjct: 122 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDQL------GFTIYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           LD Y SRE   KF+ +  Y         +  P  +    ++      +        +   
Sbjct: 440 LDAYKSREEIDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTDIVSKINTTNQAI 499

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           Q+    +LK + Q       A++ +K+ +K 
Sbjct: 500 QNQTASLLKMLNQLHGTTPEADAELKKFLKE 530


>gi|167571302|ref|ZP_02364176.1| N-6 DNA methylase [Burkholderia oklahomensis C6786]
          Length = 528

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 100/547 (18%), Positives = 191/547 (34%), Gaps = 70/547 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS--- 65
             L   +W  A+ L       ++  ++L    L+ +  A +  R  +   +         
Sbjct: 3   QDLKKTLWAAADKLRSSMDAAEYKHIVLGLIFLKYISDAFDERRVQLAAAFADGNDDLYL 62

Query: 66  -------NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNA 111
                      E         F+  +     TL +   + ++ + I +        +   
Sbjct: 63  PDAADHAEALEERDYYTMANVFWVPASARWETLRAQAKQADIGARIDAALEAIEADNPRL 122

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K I +            + G L ++    S +          ++  +YE+ + +F +   
Sbjct: 123 KGILDK----RFGRTQLEPGRLGELVDLISTVGFGEGHRAKDLLGEVYEYFLGQFATAEG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV +   +L                 +YDP CG+GG    +   +   G
Sbjct: 179 KKGGQFYTPASVVKVLVEVLAPHQG-----------RVYDPCCGSGGMFVQSEKFIEAHG 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE  P T  +    + IR   +D  ++ +       T  +D     R
Sbjct: 228 GKAD---DISIYGQEANPTTWRLVAMNLAIRGFAADLGKEPA------DTFHRDQHPDLR 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y L+NPPF       +       +  E  R+  G P  ++ +  +L H+ + L     
Sbjct: 279 ADYVLANPPFNISDWGGE-------RLTEDRRWSYGSPPAANANYAWLQHIVHHLSPR-- 329

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A +VL++  +      + E +IRR +++ D+++ +VALP  LFF T I   LW L+
Sbjct: 330 --GQAGVVLANGSMSTN--QNSEGDIRRAMVDADVVDVMVALPPQLFFNTTIPACLWFLA 385

Query: 412 NRKT----------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RE 460
             K+           +RR ++  I+A  L           R+ +D+   +I       R 
Sbjct: 386 KDKSGGAVPGGKRGRDRRNEMLFIDARKLGRMETRVV---RVFDDEDIARIAATVHRWRA 442

Query: 461 NGKFSRMLDYRTF-GYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +G+ S    Y    G+ R +K+        +L        E      +           +
Sbjct: 443 DGEDSADELYTDVPGFCRAVKLAEIAEHGHVLTPGRYVGAEEAENDDEAFNEKMERLTSV 502

Query: 519 LKPMMQQ 525
           L   M +
Sbjct: 503 LAEQMAK 509


>gi|257425924|ref|ZP_05602348.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428591|ref|ZP_05604989.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431226|ref|ZP_05607603.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433907|ref|ZP_05610265.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436823|ref|ZP_05612867.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904387|ref|ZP_06312275.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282911436|ref|ZP_06319238.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282914606|ref|ZP_06322392.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924952|ref|ZP_06332618.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|283958567|ref|ZP_06376018.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293503683|ref|ZP_06667530.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293510700|ref|ZP_06669405.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|293537241|ref|ZP_06671921.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295428388|ref|ZP_06821017.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|257271618|gb|EEV03764.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275432|gb|EEV06919.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278174|gb|EEV08822.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257282000|gb|EEV12137.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284174|gb|EEV14297.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313318|gb|EFB43714.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282321787|gb|EFB52112.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325131|gb|EFB55441.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282596005|gb|EFC00969.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790716|gb|EFC29533.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920086|gb|EFD97154.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095349|gb|EFE25614.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291466591|gb|EFF09112.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127788|gb|EFG57425.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|312437726|gb|ADQ76797.1| type I restriction-modification system DNA-methyltransferase
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 579

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL       L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +  V++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 453

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  ++
Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 507

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 567 NAYLKELGVLKD 578


>gi|308178071|ref|YP_003917477.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307745534|emb|CBT76506.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 816

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/582 (19%), Positives = 219/582 (37%), Gaps = 95/582 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W +A++L G    + +   +L    ++ +    +  +S++        
Sbjct: 1   MALKKSDLYSSLWSSADELRGSMDASQYKDYVLTLLFVKYVSDKAKEDKSSLI------- 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDNAKAIFED 117
                            Y   + S   L S   + ++   +       +  ++   +  +
Sbjct: 54  -----------------YVPDDGSFDYLVSLKGKPDVGEKVNIAVRRLAEENDLLGVINN 96

Query: 118 FDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSE 172
            DF     +L  A  L      +   F  ++        D ++ + YE+L+R F ++  +
Sbjct: 97  ADFDDP-TKLGDAKELQVKVSNLIGIFQDMDFTGSKAEGDDLLGDAYEYLMRHFATQSGK 155

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP +V  +   LL  P       S     T+YDPTCG+G  L    +       
Sbjct: 156 SKGQFYTPAEVSRVMAQLLQIP------ASTPKSTTVYDPTCGSGSLLIKVADA------ 203

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
               P  L  +GQE +  T A+    M++   E       + +++QG+TL+   F     
Sbjct: 204 ---APNGLSIYGQENDNATWALARMNMILHGNE-------THDLRQGNTLADPKFINSGS 253

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLE 347
            + F Y ++NPPF  K             +   GRF G G P   +G   FL+H+   L 
Sbjct: 254 LQTFDYLVANPPFSVKTWT-------NGFDSSYGRFDGFGTPPDKNGDYAFLLHMIKSLR 306

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+  +VL    LF G     E+ IR  L++   I+AI+ LPT+LF+ T I   L
Sbjct: 307 PR----GKGVVVLPHGVLFRGN---SEARIRTELIKRGYIKAIIGLPTNLFYGTGIPACL 359

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
            ++  +  + R G + +I+A+  +     +G K R +      +I+D +   +   ++SR
Sbjct: 360 IVIDKQDAQARTG-IFMIDASKGFA---KDGPKNR-LRPRDMHKIVDAFTGSKEIARYSR 414

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW-LDILKPMMQQ 525
           M+           +  P + ++ L+        A    + L    Q       L+ +   
Sbjct: 415 MVPISE-------ITDP-KNNYNLNIPRYIDSSAPEDIQDLCAHMQGGIPNSDLEALQPY 466

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
              +    S +   ++       ++K     I + +   G  
Sbjct: 467 WDAFPSLRSELFAPLRDG---YSELKVQTGEIRSIVTGTGEY 505


>gi|297590647|ref|ZP_06949285.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus MN8]
 gi|297575533|gb|EFH94249.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus MN8]
          Length = 579

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL       L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +  V++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 453

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  ++
Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 507

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 508 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 567 NAYLKELGVLKD 578


>gi|307704331|ref|ZP_07641248.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK597]
 gi|307622091|gb|EFO01111.1| type I restriction-modification system, M subunit [Streptococcus
           mitis SK597]
          Length = 533

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/556 (22%), Positives = 209/556 (37%), Gaps = 74/556 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
             A  E Y  +       E  + V     ++    E + + L +        LE     F
Sbjct: 62  LEAALEVYRNYYEDADTHEDLLAVMKDELNYSIKPELTFTALVARVNEGTFQLEDLAQGF 121

Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                SD     +FED D  S   +L     ++   +  + K  + +++        ++ 
Sbjct: 122 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTRIAFLGREDQL------GFTIYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y SRE   KF+ +  Y         +  P R     ++  +  L   ++    +   
Sbjct: 440 LEAYKSREEIDKFAHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINTTNQA 498

Query: 512 QSFWLDILKPMMQQIY 527
                  L  M+ Q++
Sbjct: 499 IQNQTASLLEMLGQLH 514


>gi|237807947|ref|YP_002892387.1| type I restriction-modification system, M subunit [Tolumonas
           auensis DSM 9187]
 gi|237500208|gb|ACQ92801.1| type I restriction-modification system, M subunit [Tolumonas
           auensis DSM 9187]
          Length = 805

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 196/483 (40%), Gaps = 74/483 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L F  ++ +                   
Sbjct: 1   MAIKKTELYSSLWASCDELRGGMDASQYKDYVLTFLFMKYVSDRY--------------- 45

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF       +  L       + +   I++ ++  + K + +  DF
Sbjct: 46  -KGDPYGMIVIPLGASF-----DDMKALKGDKEIGDKMNKIISALAEENDLKGVIDVADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMIDRLSKLIGIFEGLDLSANRADGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  + + ++          S     T+YDPTCG+G  L  A +         +
Sbjct: 159 QFYTPSEVSRILSKVI------GIDASTPQDATVYDPTCGSGSLLLKASD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               L  +GQE++  T A+    M++         + +  I +G+TL    +       K
Sbjct: 204 AERGLSIYGQEMDNATSALARMNMILHN-------NATAKIWKGNTLVDPQWKEANGQLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K         +        RF  G+P   +G   FL+H+   L+   
Sbjct: 257 TFDFAVANPPFSNKNWTSGLNPNE----DPFDRFTWGIPPEKNGDYTFLLHIIKSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR  LL+   I+ I+ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EARIRENLLKQGYIKGIIGLPANLFYGTGIPACIIVI 365

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLD 469
              +   R+G + +I+A+  +     +G K R +      +++D++  + E  ++SRM+ 
Sbjct: 366 DKAQAHSRKG-IFMIDASKGFI---KDGNKNR-LRAQDIHKVVDVFTKQLEQPRYSRMVP 420

Query: 470 YRT 472
              
Sbjct: 421 LSE 423


>gi|317494152|ref|ZP_07952568.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917925|gb|EFV39268.1| N-6 DNA methylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 535

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 188/540 (34%), Gaps = 75/540 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----Y 59
              + + L + +W  A+ L G     +F    L F   + L        + + ++    Y
Sbjct: 6   EAQNLSELQSRLWNIADTLRGKMNADEFRDYCLGFIFYKYLSEKFVTYANKILKEDGIKY 65

Query: 60  LAFGGSNIDLESFVKVAG------YSFYNTSEYSLSTLGST-----------NTRNNLES 102
                 +   +  +            ++        T+                  +L +
Sbjct: 66  NELTAEHPAYQDIIDAVKDDSIQTLGYFLPPTDLFHTMAQRVAKDQKGAGEGFILEDLAT 125

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTV 150
            + +   +        DFS+    L+            K  L+ K+      +  +    
Sbjct: 126 TLRNIEQSTLGTDSADDFSNLFEDLDLGSSKLGNTAKAKNELIGKVITELDKLSFNLSEA 185

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++ + YE+LI +F S   + A +F TP+ V  L   ++              ++ +Y
Sbjct: 186 SSDILGDAYEYLIGQFASGAGKKAGEFYTPQPVSTLLAKIVTTHKL--------KLKNVY 237

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L              +   +   +GQE+   T+ +    M++  +      
Sbjct: 238 DPTCGSGSLL---------LRVKREASSVGKIYGQEMNRTTYNLARMNMILHGVHYADFE 288

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I Q  TL     T  +F   ++NPPF  KW      +  +            L  
Sbjct: 289 -----IMQEDTLEHPQHTHLKFDAIVANPPFSAKWSASPLFMNDDRFAQY-----GKLAP 338

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389
            S   M F+ H+   LE      G  A+VL    LF G A   E  IR++++E  + I+A
Sbjct: 339 SSKADMAFVQHMFYHLEDD----GTMAVVLPHGVLFRGAA---EGHIRKFMIEQQNCIDA 391

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++F+ T+I T + +L  RK  +    +  I+A++ +  ++     +  +  +  
Sbjct: 392 VIGLPANIFYGTSIPTCVLVL--RKCRKHNDGILFIDASNDFEKVKT----QNRLLPEHI 445

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +I D Y   +   K+S +            +  P  +     +  +         R L 
Sbjct: 446 DKIADTYNDWKALEKYSHIATLEEIRNNDYNLNIPRYVDTFEAEDEIDLNAVAKEIRNLE 505


>gi|293401669|ref|ZP_06645811.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304927|gb|EFE46174.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 508

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 200/540 (37%), Gaps = 63/540 (11%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              + A++     IW  A  LWG     ++ KVI+    LR +  A +   + + E+   
Sbjct: 1   MASNNANIGFEKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFDKRYNELVEE--- 57

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLESY---IASFSDNAKAI 114
             G   + +    +    F+   +   S +            ++     I + +   K +
Sbjct: 58  --GYGFENDRDAYIEENVFFVPEKARWSYISKNAHTHEIGKVIDDAMRAIEAENKTLKNV 115

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                 +  + +     +L  +   F+ +++        ++   YE+ I+ F +      
Sbjct: 116 LPKNYATPDLDK----RVLGNVVDVFNCVDMKDTEDSKDLLGRTYEYCIQEFAAHEGVKG 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V     +L           P     +YDP CG+GG    ++  +     + 
Sbjct: 172 GEFYTPSSIVKTIVEIL----------KPFDNCRVYDPCCGSGGMFVQSVKFLQAHSGNR 221

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE   +T  +    M IR ++++             T  +DL    +  +
Sbjct: 222 N---RISVYGQESNADTWKMAKMNMAIRGIDANFGP------YHADTFFEDLHPTLKADF 272

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF               K  E  R+  G+P   + +  ++ H+ + L       G
Sbjct: 273 IMANPPFNLSNWGQD-------KLKEDKRWVYGIPPAGNANFAWIQHMIHHLAP----NG 321

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +  +VL++  L      SGE +IR+ ++E DLIE IVALPT LF+   I   LW ++  K
Sbjct: 322 KIGLVLANGAL--SSQTSGEGQIRKNIIEADLIEGIVALPTQLFYSVTIPVTLWFITKNK 379

Query: 415 TEERRGKVQLINATDL-WTSIRNEGKKRRIINDD----QRRQILDIYVSRENGKFSRMLD 469
             +++GK   I+A  + + + R        I +D       ++   +   + G    +  
Sbjct: 380 --KQKGKTLFIDARKMGYMADRKHRDFTVGIQEDGSLGDVDKLAKTFELFQEGNLEDI-- 435

Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               G+ ++      ++  +IL       +E      +            L  M ++ + 
Sbjct: 436 ---KGFCKVASTEDIIKQDYILTPGRYVGIEEQEDDGEPFDDKMKRLTSELSDMFKKSHE 492


>gi|219870605|ref|YP_002474980.1| Type I restriction-modification system methyltransferase subunit
           [Haemophilus parasuis SH0165]
 gi|219690809|gb|ACL32032.1| Type I restriction-modification system methyltransferase subunit
           [Haemophilus parasuis SH0165]
          Length = 562

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/570 (17%), Positives = 192/570 (33%), Gaps = 82/570 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              L   +WK A+ L       ++  ++L    L+ +  +    +  ++++Y        
Sbjct: 28  LNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQEIIKQRYTDPTSDFY 87

Query: 66  ----------------NIDLESFVKVAGYSFYNTSEYSLSTLG---STNTRNNL--ESYI 104
                               E         F+   +     +      N  + +  E   
Sbjct: 88  LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTF 147

Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151
              ++     F+          + I R+        +L  +   FS       T+     
Sbjct: 148 KGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVDESILLGLIDLFSDTNFTRPTLDGKPI 207

Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L                
Sbjct: 208 SLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYKG 256

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF       + +   +      +   GQE  P T  +    M IR +E D
Sbjct: 257 RIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEFD 313

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +  +       T S      K+  + ++NPPF  K               +  R+  G
Sbjct: 314 FGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWNESLAQDPRWQYG 360

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   + +  +L H+   L       GR A++L++  + +      E EIR+ +L+ DL+
Sbjct: 361 IPPEGNANFAWLQHMIYHLSP----NGRMALLLANGSMSSNTNN--EGEIRKNILKADLV 414

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ALP+ LF  T I   +WIL+  K    +G+V  I+A  L           R    D
Sbjct: 415 EAMIALPSQLFTNTQIPACIWILNKNKAR--KGEVLFIDARQLGYMKDRV---LRDFTAD 469

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506
              ++ D Y S +    +   +   F Y    +    +  F+L         E +     
Sbjct: 470 DIAKVADTYHSWQQS--ADYQNIPAFCYTA-SLDEIAQNDFVLTPGRYVGAAEQEDDGVP 526

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            +   Q     + +   Q        ++ +
Sbjct: 527 FAEKMQELTALLQQQFQQSAELEAKIKANL 556


>gi|329732563|gb|EGG68913.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/545 (21%), Positives = 206/545 (37%), Gaps = 68/545 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMINLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LEIPAFLGTTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKE 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P  +    ++  +   +     + +         +I 
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIPRYVDTFEEEEPIDLDQVQQDLKNIDKEIAEIEQEIN 506

Query: 520 KPMMQ 524
             + +
Sbjct: 507 AYLKE 511


>gi|218263900|ref|ZP_03477848.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222411|gb|EEC95061.1| hypothetical protein PRABACTJOHN_03538 [Parabacteroides johnsonii
           DSM 18315]
          Length = 510

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/485 (21%), Positives = 189/485 (38%), Gaps = 62/485 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112
            ++        G        +      + N  N L      I   +             +
Sbjct: 76  QVEDLPIRIPDGAH------WRDVREVTENVSNKLVEAFIAIEQANPAKEMDGRKIGGLE 129

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF   D  +  A++  + ++  + ++FS   L     P   M   YE+L+ +F  +   
Sbjct: 130 GIFGPKDGWTNKAKMPDS-IITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A++F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G 
Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPKPNESIYDPTCGSGGMLVKCLDYLRNKG- 237

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
             +    +   GQE+   T ++    + +  +E         +I    TL    F     
Sbjct: 238 --EEWQSVQVFGQEVNGLTSSIARMNLYLNGVE-------DFSIVCADTLEHPAFLDGSH 288

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L+NPP+  K         ++  N + GR   G P        FL H+   +  
Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFLQHIIASMNE 343

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR AI+     LF       E E+R+ L+E D+++ I+ L  +LF+ + +   + 
Sbjct: 344 TQ---GRCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACIL 396

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRM 467
           I +  K   ++ +V +INA +  T          ++  +  ++I++ Y  +RE   FSR+
Sbjct: 397 ICNCSKANSKKNRVLMINAVNEVTR----KNAESMLLAEHIQRIVNAYQQNRELDGFSRI 452

Query: 468 LDYRT 472
           +    
Sbjct: 453 VSNDE 457


>gi|124002924|ref|ZP_01687775.1| type I restriction-modification system, M subunit [Microscilla
           marina ATCC 23134]
 gi|123991574|gb|EAY30982.1| type I restriction-modification system, M subunit [Microscilla
           marina ATCC 23134]
          Length = 538

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/580 (20%), Positives = 206/580 (35%), Gaps = 88/580 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKY 59
           MT+       L + +WK A++L G      F   +L F  L+ L    E   +  +   Y
Sbjct: 1   MTQ-QEQHNQLGSTLWKIADELRGAMNADSFRDYMLSFLFLKYLSSNYEEAAKRELGSDY 59

Query: 60  LAFGGSNID---------------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
               G                    E   ++     Y      L    S   R+  E  +
Sbjct: 60  PKLDGEEDTRTPLSIWYAANADDVPEFEAQMRKKVHYVIEPIYLWKSISELARSQHEDLL 119

Query: 105 ------------ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
                        SF    + +F +    S        E+   L  I    S   +   +
Sbjct: 120 KTLKEGFKYIENESFESAFQGLFSEIHLDSEKLGKNTTERNKRLCTIVSKISA-GIAEFS 178

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                + + YE+LI +F +   + A +F TP+ +  + + ++              +  +
Sbjct: 179 TDSDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISGILSEIVTLDCQNPAAGKKKKLEHV 238

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D  CG+G  L +    +   G           +GQE    T+ +    ML+  ++    
Sbjct: 239 LDFACGSGSLLLNVRKRMVQAGGSTGK-----IYGQEKNVTTYNLARMNMLLHGMK---- 289

Query: 270 RDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            D   +I  G TL          +     +F   ++NPPF  +W+   D         E 
Sbjct: 290 -DTEFDIFHGDTLLNQWGVLNEMNPAKKPKFDAIVANPPFSLRWDSSSD-------LAED 341

Query: 322 GRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            RF G GL   S     FL+H  + L    +  G   I+L    LF G A   E  IR  
Sbjct: 342 FRFRGYGLAPKSAADFAFLLHGFHYL----SDNGTMTIILPHGVLFRGGA---EERIRTK 394

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL+++ I+ ++ LP++LF+ T I   + +L   K   R   V  INA++ +      GK+
Sbjct: 395 LLKDNHIDTVIGLPSNLFYSTGIPVCILVL---KKCTRANDVLFINASEHFDK----GKR 447

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           +  +N+D   +I+D Y  R+  +            +R+ +       + L+ T       
Sbjct: 448 QNALNEDHIAKIIDTYQHRKEEER---------YSQRVTMAEIEEQGYNLNITRYVSTAK 498

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWA-ESFVKES 539
                 L  ++       L+ + + I  +  A   F+KE 
Sbjct: 499 PEPKVDLKEVNAE-----LRTVNKDIKKHTDAHNEFLKEL 533


>gi|296453353|ref|YP_003660496.1| type I restriction-modification system subunit M [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296182784|gb|ADG99665.1| type I restriction-modification system, M subunit [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 520

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 122/559 (21%), Positives = 206/559 (36%), Gaps = 75/559 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------ALEPTRS 53
           MT      A L   IW  A  L G     DF + +L F   R +           E    
Sbjct: 1   MTNSGAQRAELHKAIWNIANVLRGSVDGWDFKQYVLGFLFYRFISEDITSYLNGYEHQAG 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSDNA- 111
            V   Y     +  +      V    ++       + + +    + NL   +     N  
Sbjct: 61  DVDFDYAKLDDATAEQVRKSMVEEKGYFILPSDLFANVRNRADGDENLNETLQRVFKNIE 120

Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-- 152
                       + +F+D D +S   +L     E+   L K+      ++L  ++  D  
Sbjct: 121 GSAIGSRSESSLRGLFDDLDLNS--RKLGDTVVERNAKLVKVLNAIGNLDLGTESFADNT 178

Query: 153 -RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + +   +   +F TP++V  L T +       + K        +YD
Sbjct: 179 IDAFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIATHGKSEVNK--------VYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  ++  +       K        GQE    T+ +C   M +  +  D    
Sbjct: 231 PACGSGSLLLQSIKVL------GKDKVRQGFFGQEKNLTTYNLCRINMFLHDVNYD---- 280

Query: 272 LSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              NI  G TL        + F   +SNPP+  KWE D +            RF P   L
Sbjct: 281 -HFNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPT-----LINDPRFSPAGVL 334

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+ + L       G AAIV     L+ G     E +IR++LLE + I+
Sbjct: 335 APKSKADLAFTMHMLSWLAAD----GTAAIVEFPGVLYRGGK---EQKIRKYLLEKNFID 387

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP +LFF T+IAT + +L   K ++    V  I+A++ +  + N    +  ++ D 
Sbjct: 388 AVIQLPPNLFFGTSIATCIIVLRKSKNDDS---VLFIDASERFVHVGN----QNQLSPDD 440

Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWR 505
              I+D YV RE  + FS +            +     +     +    +A L   I+  
Sbjct: 441 IAAIMDAYVKREPVEHFSAVASLEDIRKNDYVLSVSSYVQPKDTREKIDIAALNRQISDI 500

Query: 506 KLSPLHQSFWLDILKPMMQ 524
                     +D +   ++
Sbjct: 501 VARENELRTQIDAIIADLE 519


>gi|49484057|ref|YP_041281.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49242186|emb|CAG40888.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|315195725|gb|EFU26112.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 518

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL       L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +  V++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  ++
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|311063620|ref|YP_003970345.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
 gi|310865939|gb|ADP35308.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 520

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/562 (22%), Positives = 206/562 (36%), Gaps = 81/562 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW  A  L G     DF + +L F   R +    E   S + E   
Sbjct: 1   MTNSGTQRAELHKTIWSIANVLRGSVDGWDFKQYVLGFLFYRFIS---EDITSYLNEYEH 57

Query: 61  AFGGSNIDLESFVKVAGYS-----------FYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
             G  + D                      F   S+   +     +   NL   +     
Sbjct: 58  QAGDVDFDYAKLDDATAEQVRKSMVEEKGYFILPSDLFANVRRCADADENLNETLQRVFK 117

Query: 110 NA-------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151
           N              + +F+D D +S   +L     ++   L K+      ++L  ++  
Sbjct: 118 NIEGSAIGSRSESSLRGLFDDLDLNS--RKLGDTVVDRNAKLVKVLNAIGDLDLGTESFA 175

Query: 152 D---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           D       + YE+L+  + +   +   +F TP++V  L T +       + K        
Sbjct: 176 DNKIDAFGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLTRIATHGKSEVNK-------- 227

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L  ++  +       K        GQE    T+ +C   M +  +  D 
Sbjct: 228 VYDPACGSGSLLLQSIKVL------GKDKVRQGFFGQEKNLTTYNLCRINMFLHDVNYD- 280

Query: 269 RRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 NI  G TL        + F   +SNPP+  KWE D +            RF P 
Sbjct: 281 ----HFNIAYGDTLINPQHWDDEPFEVIVSNPPYSTKWEGDDNPT-----LINDPRFAPA 331

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S   + F MH+ + L       G AAIV     L+ G     E +IR++LLE +
Sbjct: 332 GVLAPKSKADLAFTMHMLSWLAAD----GTAAIVEFPGVLYRGGK---EQKIRKYLLEGN 384

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+A++ LP +LFF T+IAT + +L   K ++    V  I+A++ +  + N    +  ++
Sbjct: 385 FIDAVIQLPPNLFFGTSIATCIIVLKKSKNDDS---VLFIDASERFVHVGN----QNQLS 437

Query: 446 DDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADI 502
            D    I+D YV RE  + FS +            +     +     +    +A L   I
Sbjct: 438 PDDIAAIMDAYVKREPVEHFSAVASLEDIRKNDYVLSVSSYVQPKDTREKIDIAALNRQI 497

Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524
           +            +D +   ++
Sbjct: 498 SDIVARESELRTQIDAIVADLE 519


>gi|302878640|ref|YP_003847204.1| type I restriction-modification system, M subunit [Gallionella
           capsiferriformans ES-2]
 gi|302581429|gb|ADL55440.1| type I restriction-modification system, M subunit [Gallionella
           capsiferriformans ES-2]
          Length = 553

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 103/545 (18%), Positives = 200/545 (36%), Gaps = 86/545 (15%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLE------------------CALEPTRSAVRE 57
           W  A  L G     +F   IL F   + L                    AL+ +    R 
Sbjct: 36  WNIANTLRGKMGADEFRDYILGFIFYKYLSEKIQRFADAELAQENLHFAALKESTEEGRA 95

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTS-----EYSLSTLGSTN--TRNNLESYIASFSDN 110
              A   + +    +       F+  +     +     LG ++     +L   + +   +
Sbjct: 96  YIAALEEAALGELGYFLKPSELFHAIAMKGSNQEDEHKLGDSHNFILADLTRILKNIEQS 155

Query: 111 AKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                   DF +    L+            K  L+ K+  +   I+ +       V+ + 
Sbjct: 156 TLGTESADDFVNLFEDLDLTSSKLGNSEKEKNALVAKVLTHLDKIDFNLSDSTADVLGDA 215

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  F S   + A +F TP+ V  L   L+              ++++YDPTCG+G 
Sbjct: 216 YEYLIGEFASGAGKKAGEFYTPQPVSTLLAKLVTA--------QKQTLKSVYDPTCGSGS 267

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L              +   +   +GQEL   T+ +    M++  +          +I+Q
Sbjct: 268 LL---------LRVKREAKQVDKIYGQELNRTTYNLARMNMILHDVH-----YADFDIKQ 313

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSM 336
             TL +      RF   ++NPPF  +W   +  +  +       RF     L   S   M
Sbjct: 314 EDTLERPQHRELRFDAIVANPPFSAQWSASQLHMSDD-------RFSVYGKLAPASKADM 366

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+  +L       G  A+VL    LF G A   E  IR++L+E  + ++A++ LP 
Sbjct: 367 AFVQHMVYQLAEE----GTMAVVLPHGVLFRGAA---EGHIRQYLIEQLNCLDAVIGLPA 419

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F+ T+I T + +   +K  +    +  I+A+  +  ++       ++  +  ++I+D 
Sbjct: 420 NIFYGTSIPTCVLVF--KKCRKNPDNILFIDASQHFDKVKTT----NVMRPEHIQKIVDT 473

Query: 456 YVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           Y +R    K+S +    +       +  P    ++        ++  +   +L  L ++ 
Sbjct: 474 YKARSNEEKYSHVASIESIKANDYNLNIP---RYVDTFEAEEAIDLAVISAQLIELDKAS 530

Query: 515 WLDIL 519
                
Sbjct: 531 LTTDA 535


>gi|116627584|ref|YP_820203.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMD-9]
 gi|116100861|gb|ABJ66007.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus LMD-9]
          Length = 534

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 121/595 (20%), Positives = 215/595 (36%), Gaps = 94/595 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 50  PTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105
            +       Y  +       E  +       S+    + + + L     +    LE    
Sbjct: 61  ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F     SD     +FED D  S   +L     ++   +  + K  + +++        +
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T 
Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  + +     
Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
            +    TL +D        F   L NPP+  KW      ++         RF P   L  
Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ +
Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    
Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +IL+ Y SRE+                       + + +     +   + ++   +    
Sbjct: 439 KILNAYKSREDMD---------------------KFAHLASFEEIVENDYNLNIPRYVDT 477

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564
            +   ++ L  ++ +I            S+     +           + AF+ AF
Sbjct: 478 FEEEEVEPLTEIVAKINQTNATIESQTASLLDMLGQLHGTTPEADKELKAFVEAF 532


>gi|328471218|gb|EGF42120.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus 10329]
          Length = 544

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/500 (19%), Positives = 176/500 (35%), Gaps = 77/500 (15%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                   + N  W   +   G      +   IL    ++ +        +  +++Y   
Sbjct: 6   NDKIQQKDINNAAWAACDTFRGAVDPAQYKDYILVMLFVKYISDVWNDHYAEYKKQYGDD 65

Query: 63  GG------------------SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
                               +    +   K       +T   +  +L       N+   I
Sbjct: 66  DVRIRRKLERERFVLPMVELTEEVEDPATKEKKTVVTDTFLANYYSLLERKNEPNIGELI 125

Query: 105 A--------SFSDNAKAIFEDFDFS---STIARLEKAGLLYKICKNFSG--IELHPDTVP 151
                    +     + +F + DF+   +     ++   L  +  +F+   +++ P  V 
Sbjct: 126 NIVLEHIETANKAKLEGVFRNIDFNSEANLGKTKDRNRRLKTLLDDFNKPALDMSPSRVS 185

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           + V+ N Y +LI RFGS+  + A +F TP  V  L   L           +P     + D
Sbjct: 186 EDVIGNTYIYLIERFGSDAGKKAGEFYTPHKVSELVARL----------SAPKSGARICD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+ G L +A   V D             +G E+   T A+    M +   +      
Sbjct: 236 PACGSAGLLIEAARQVGDRN--------YSLYGMEVNGSTWALARMNMFLHGSDF----- 282

Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               I+  +TL+           +F   ++NPPF        D  E         R+  G
Sbjct: 283 --ARIEWCNTLTSPALVENDRLMKFDNVVANPPFSLDKWGADDVTEDR-----YNRYWRG 335

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S     F+ H+    E      GR A+V+    LF G A   E  IR+ L+E +L+
Sbjct: 336 LPPKSKADFAFISHMV---EAAVEKEGRIAVVVPHGVLFRGAA---EGRIRQKLIEENLL 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRI 443
           +A++ LP +LF  T I   + I    + +    E R  V  ++A+         GK + I
Sbjct: 390 DAVIGLPGNLFPSTGIPVAILIFDRSREKGGANENRKDVLFVDASGKDHY--QAGKNQNI 447

Query: 444 INDDQRRQILDIYVSRENGK 463
           + D+   +I+    +R   +
Sbjct: 448 LLDEHLDKIVAAVTARNEVE 467


>gi|153807714|ref|ZP_01960382.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185]
 gi|160886164|ref|ZP_02067167.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483]
 gi|160889102|ref|ZP_02070105.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492]
 gi|149129323|gb|EDM20537.1| hypothetical protein BACCAC_01996 [Bacteroides caccae ATCC 43185]
 gi|156108049|gb|EDO09794.1| hypothetical protein BACOVA_04171 [Bacteroides ovatus ATCC 8483]
 gi|156861569|gb|EDO55000.1| hypothetical protein BACUNI_01523 [Bacteroides uniformis ATCC 8492]
          Length = 510

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/476 (20%), Positives = 183/476 (38%), Gaps = 61/476 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112
            ++        G        +      + N  N L      I   +             +
Sbjct: 76  QVEDLPIRIPDGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF   D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +   
Sbjct: 130 GIFGPKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A++F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+
Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGA 238

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
                  +   GQE+   T ++    + +  +E         +I    TL    F     
Sbjct: 239 E---WQSVQVFGQEVNGLTSSIARMNLYLNGVE-------DFSIACADTLEHPAFLDGSH 288

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L+NPP+  K         ++  N + GR   G P        F  H+   ++ 
Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFFQHIIASMDR 343

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR AI+     LF       E E+R+ L+E D+++ ++ L  +LFF  ++   + 
Sbjct: 344 NT---GRCAILFPHGVLFRDE----EYELRKKLVEIDIVDCVIGLGPNLFFNASMEACII 396

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           I  NRK +  +GKV  I+A        +       + +   ++I+  Y + E+ ++
Sbjct: 397 ICKNRKEDSHKGKVIFIDAKGE----VSRKNAESYLENTHIQKIISAYENFEDIEY 448


>gi|78046069|ref|YP_362244.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034499|emb|CAJ22144.1| type I site-specific deoxyribonuclease (modification subunit)
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 538

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/575 (19%), Positives = 213/575 (37%), Gaps = 91/575 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTKDDQK--ELGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGSDY 58

Query: 60  LAFGGSN---------------IDLESFVKVA--GYSFYNTSEYSLSTLGSTNTRN--NL 100
                                  D+ +F +       +    +Y    + +       +L
Sbjct: 59  PDAKAIGNSDKTPLSVWYAANPDDVAAFEQQMRRKAHYVIKPKYLWGNIVNLAKTQSHDL 118

Query: 101 ESYI---------ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELH 146
              +          SF    + +F + + +S   +L     ++   L  I    +     
Sbjct: 119 LDTLQQGFKHIEEDSFESEFQGLFSEINLAS--DKLGRKYDDRNAKLCSIISEIARGMAL 176

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   + + YE+LI +F +   + A +F TP+++ ++ +A++            G +
Sbjct: 177 STKTDS--LGDAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEPKTGPRGKL 234

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            +++D  CG+G  L +  N +   G           +GQE    T+ +    ML+  ++ 
Sbjct: 235 DSVFDFACGSGSLLLNIRNRMTSSGGSIGK-----IYGQEYNVTTYNLARMNMLLHGVK- 288

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
               D    I  G TL  D    +        RF   ++NPPF  +WE  +   +     
Sbjct: 289 ----DTEFEIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQ----- 339

Query: 319 GELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
               RF   G+   S     FL+H    L+      G  AI+L    LF G     E++I
Sbjct: 340 --DARFKNHGVAPKSAADFAFLLHGLQYLKDD----GVMAIILPHGVLFRGGK---EADI 390

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           RR LL++  I+ ++ LP +LF+ T I   + +L   K       V  INA + +T     
Sbjct: 391 RRKLLDDGHIDTVIGLPPNLFYSTGIPVCILVLKKCKKP---DDVLFINACEQFTR---- 443

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           GK++  + D+  ++I+D Y +R+  +            +RI + R     + L+ +    
Sbjct: 444 GKRQNQLTDEHIKRIVDTYKNRDEQER---------YSKRISMTRIAEEGYNLNISRY-- 492

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           +      ++++       L  ++  +++      A
Sbjct: 493 VSTAKADKEINLEAVHVDLKAIESELEKAKKRHNA 527


>gi|329731922|gb|EGG68280.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 518

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/552 (21%), Positives = 203/552 (36%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+    +F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDANEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +  +        I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 340 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  + 
Sbjct: 393 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKG 446

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 447 TIDKYSYSATLQEIAENDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEI 505

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 506 NAYLKELGVLKD 517


>gi|254520681|ref|ZP_05132737.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA]
 gi|226914430|gb|EEH99631.1| type I restriction-modification system [Clostridium sp. 7_2_43FAA]
          Length = 518

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/558 (18%), Positives = 208/558 (37%), Gaps = 77/558 (13%)

Query: 1   MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M E   +         SL   +W  A  L G  + ++F   IL     R L   +E    
Sbjct: 1   MEEDMNTEEKQREQQGSLQTKLWDIANTLRGSMEASEFKNYILGLIFYRYLSENVEERAL 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGY------SFYNTSEYSLSTLG-----STNTRNNLES 102
            + E+         + E + +           ++   +Y    L             LE 
Sbjct: 61  KLLEEDNVTYEKAWEDEEYREALQEELVNDIGYFIEPKYLFRVLLRGIETGDFDIETLEE 120

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTV 150
            I   +++      + DF      ++            ++ ++ K+  + + I       
Sbjct: 121 AINDITESTLGHESEEDFDHLFDDMDLKSTKLGKDVKSRSEIIGKVMGSIASIPFKFGDS 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++ + YE+LI +F +   + A +F TP+ V  +   ++      L        + +Y
Sbjct: 181 EIDILGDAYEYLIGQFAANAGKKAGEFYTPQQVSRILAKIVTMDKKDL--------KNVY 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L              K   +   +GQE    T+ +    M++  +      
Sbjct: 233 DPTCGSGSLLLRVS----------KEANVRTFYGQEKVSTTYNLARMNMILHGV-----S 277

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GL 328
               NI+   TL        +F   ++NPP+   W    D ++ E       RF     L
Sbjct: 278 YKDFNIKNDDTLENPQHKDMKFEAIVANPPYSANWSAKADFLDDE-------RFSAYGKL 330

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              S     F+ H+  +L    +  G  A+VL    LF G A   E  IR++L+E  +++
Sbjct: 331 APKSKADFAFIQHMIYQL----DDNGTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNVL 383

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP ++FF T+I T + +  N +  + +  +  I+A++ +      GK + ++ D+
Sbjct: 384 DAVIGLPANIFFGTSIPTVILVFKNNR--KDKENILFIDASNDFEK----GKNQNLLRDE 437

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I++   +RE   K+S + +          +  P  +    ++  +       + + 
Sbjct: 438 DVEKIINTIRNREAIDKYSYVANIEEIKDNDYNLNIPRYVDTFEEEEEIDIKAVQESIKN 497

Query: 507 LSPLHQSFWLDILKPMMQ 524
                +  +  + + + +
Sbjct: 498 RDKTLEELYKKLEEDLKE 515


>gi|312872245|ref|ZP_07732318.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092329|gb|EFQ50700.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
          Length = 398

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/439 (20%), Positives = 170/439 (38%), Gaps = 49/439 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  T +       +W  A  LWG     ++ +VI+    LR +  A +     +  +  
Sbjct: 1   MTNKTNANIGFEKHLWDAACVLWGHIPAAEYRQVIIGLIFLRYVSSAFDKRYQELVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +    +    F+   E    T+             +N    I S +   K 
Sbjct: 59  ---GDGFEDDRDAYIMENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIESENKTLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +      S  + +     +L  +   F+  I++      + ++   YE+ I +F  +  +
Sbjct: 116 VLPKNYASPDLNK----QVLGDVVDIFTNRIDMSDKKQSEDLLGRTYEYCIAKFAEKEGK 171

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V    ++L           P     +YD  CG+GG    +   +     
Sbjct: 172 SGGEFYTPSSIVKTLVSIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +  +GQE   +T  +    M IR +++D     +       T + DL    + 
Sbjct: 222 NCG---SISIYGQEANADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + L+NPPF       +       K  +  R+  G P   + +  ++ H+ + L      
Sbjct: 273 DFILANPPFNYSPWNQE-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP---- 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+  +VL++  L +     GE EIR+ ++E+DLIE I++LP  LF+   I   LW +S 
Sbjct: 322 NGKIGLVLANGALSSQSC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVQIPVTLWFISQ 379

Query: 413 RKTEERRGKVQLINATDLW 431
            K ++ +  + ++   D W
Sbjct: 380 NKNKKEKQSLLMLAKWDTW 398


>gi|310765245|gb|ADP10195.1| Type I restriction modification DNA modification domain protein
           [Erwinia sp. Ejp617]
          Length = 568

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/529 (19%), Positives = 176/529 (33%), Gaps = 105/529 (19%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---- 55
           M          L +  WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MNNTEQQFLKELDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFEARQKELTKLF 60

Query: 56  -------------REKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTN-- 95
                        RE+Y +       ++  ++V  Y      F+        TL S    
Sbjct: 61  REVGNADNSYAIPREEYDSEAAYQQAIDQELEVEDYYAEKNVFWVPKAARWETLKSQAAL 120

Query: 96  ----------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
                                   +N    I   +D  K I                 +L
Sbjct: 121 PVGSVLGLDAKGKEVTLRSVSLLIDNALDKIEQSNDKLKGIINRIAHYQLG-----NEVL 175

Query: 134 YKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
             +   FS                    ++ ++YE+ + +F     +    + TP+ +V 
Sbjct: 176 IGLINTFSDANFSNPQYNGEQLKLSSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVT 235

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----HHKIPPIL 240
           L   +L                 +YDP  G+GGF   +   +            +    +
Sbjct: 236 LIVEMLQPYQG-----------RVYDPAMGSGGFFVSSDRFIEQHADAQRYNAAEQKQKI 284

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
           V +GQE  P T  +    M IR ++ +         +   TL  D     R  + ++NPP
Sbjct: 285 VVYGQESNPTTWRLAAMNMAIRGIDFEFGT------KNADTLLDDQHPDLRADFVMANPP 338

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K            K     R+  G P   + +  ++ H+ + L       G  A++L
Sbjct: 339 FNMKEW-------WNAKLENDVRWQYGTPPQGNANFAWMQHMIHHLAPK----GAMALLL 387

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
             +        + E EIRR L+E DL+E +VALP  LF  T I   +W+L+  K+     
Sbjct: 388 --ANGSMSSNSNNEGEIRRKLVEADLVECMVALPGQLFTNTQIPACIWLLTKDKSGGNGK 445

Query: 416 EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             R+G+V  I+A    +   R      R    +   +I D + + +  K
Sbjct: 446 AHRKGEVLFIDARQTGFMKDRVL----RDFTTEDIAKIADTFHAWQTDK 490


>gi|291167073|gb|EFE29119.1| type I restriction-modification system, M subunit [Filifactor
           alocis ATCC 35896]
          Length = 510

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 192/532 (36%), Gaps = 64/532 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              IW  A  LWG     ++ KVI+    LR +  A E     + ++     G   + + 
Sbjct: 12  EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLKE-----GDGFENDR 66

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----- 126
                   F+   E   S + S      + + I       +   E+    + + +     
Sbjct: 67  DAYAEENIFFVPKEARWSKISSAAHTPEIGTVIDDAMRAIEK--ENITLKNVLPKNYASP 124

Query: 127 LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                +L ++   F + +++        ++   YE+ I +F +       +F TP  +V 
Sbjct: 125 DLDKRVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
              A+L           P     +YDP CG+GG    +   V     +      +  +GQ
Sbjct: 185 TIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---NISVYGQ 231

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E   +T  +    M IR ++++             T   D+    +  + ++NPPF    
Sbjct: 232 ESNADTWKMAKMNMAIRGIDANFGS------YHADTFFNDIHKTLKSDFIMANPPFNLSN 285

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K  E  R+  G P   + +  ++ H+ + L       G+  +VL++  L
Sbjct: 286 WGAD-------KLKEDVRWKYGTPPSGNANYAWIQHMIHHL----AANGKIGLVLANGAL 334

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 SGE EIR+ ++E+DL+E IVALPT LF+   I   LW ++  K  +++GK   I
Sbjct: 335 --SSQSSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGKTLFI 390

Query: 426 NATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +A  +   +     K R   +             +   +   +NG     +     G+  
Sbjct: 391 DARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNG-----VLEEKKGFSA 442

Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           I  +    +  +IL       +E      +      +     L  M ++ + 
Sbjct: 443 IASIEDIAKQDYILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSDMFKKSHE 494


>gi|291277029|ref|YP_003516801.1| type I restriction-modification system M protein [Helicobacter
           mustelae 12198]
 gi|290964223|emb|CBG40072.1| type I restriction-modification system M protein [Helicobacter
           mustelae 12198]
          Length = 542

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 119/533 (22%), Positives = 198/533 (37%), Gaps = 77/533 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREKYLAFGG 64
            + L N IWK A +L G     DF + +L     R +   L      R    + Y     
Sbjct: 36  QSELHNTIWKVANELRGSVDGWDFKQYVLGMIFYRYISENLANYINAREGKPKFYEDLSD 95

Query: 65  S--NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------------SFSD 109
                  E  +K  G+ F   S    + + +     NL + +                 D
Sbjct: 96  EIAETVREDLIKAKGF-FIPPSALFCNVVKNAPNDENLNTTLGNIFKNIEKSSIGTGSED 154

Query: 110 NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLI 163
           N K +F D D +S   +L     EK   L K+    + ++L         V  + YE+L+
Sbjct: 155 NVKGLFADLDVNS--NKLGNSVDEKNKKLIKLLCAINSMQLGEIKQSGIDVFGDAYEYLM 212

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L   
Sbjct: 213 AMYASNAGKSGGEFFTPQEVSQLLAKIALHGQESVNK--------VYDPCCGSGSLLLQC 264

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +       K   +   +GQE+   T+ +C   M +  ++         NI  G TL+
Sbjct: 265 AKVI------GKENVLKGFYGQEINLTTYNLCRINMFLHDID-----YHKFNIAHGDTLT 313

Query: 284 KDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
                  + F   +SNPP+  KW  D D            RF     L       + F M
Sbjct: 314 DPKHRDDEPFDAIVSNPPYSTKWVGDDDPT-----LMGDERFRAAGKLAPKGSADLAFTM 368

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H+ + L       G  AIV     L+   A   E  IR +L+ +D ++ ++ LP++LFF 
Sbjct: 369 HMLHSLSNS----GTCAIVEFPGVLYRSGA---EKTIREYLINHDYVDCVIQLPSNLFFG 421

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IAT + +L   K +    K   I+A+  +      GKK   + +  R +IL  ++ RE
Sbjct: 422 TSIATAILVLKKNKRD---DKTLFIDASAEFV---KSGKK-NKLTEQNREKILQTWIQRE 474

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                  L         + + +     + L        +       +  L+Q 
Sbjct: 475 ELPHFSTL---------VSMEKIKDNDYNLSVNRYIETQEQKEEIDIQALNQE 518


>gi|228994625|ref|ZP_04154449.1| Type I restriction-modification system, M subunit [Bacillus
           pseudomycoides DSM 12442]
 gi|228765110|gb|EEM13840.1| Type I restriction-modification system, M subunit [Bacillus
           pseudomycoides DSM 12442]
          Length = 517

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 109/557 (19%), Positives = 195/557 (35%), Gaps = 77/557 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVRE 57
              A L   +W  A DL G     +F   IL     R L           L     +  E
Sbjct: 9   QQQAELHKKLWAMANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFVE 68

Query: 58  KYLAFGGSNIDLESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNA 111
            +          E  +   GY     Y  S +        N   ++E           + 
Sbjct: 69  AWENDEYREDLQEYLINELGYVITPQYLFSTFVKEIELGANGNFDIEMLQNGVKFIESST 128

Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                  DF +    ++            ++ L+ K+  N + I    D V   V+ + Y
Sbjct: 129 MGADSQEDFENLFDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAY 188

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E++I +F +   + A +F TP+ V  +   ++              I+ +YD TCG+G  
Sbjct: 189 EYMISQFAANAGKKAGEFYTPQQVSRILAKIVTAGKTE--------IKDVYDGTCGSGSL 240

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                  +   +GQE    T+ +    ML+  +          +I+  
Sbjct: 241 LLRVGKEAK----------VYNYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNA 285

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TL +     KRF   ++NPP+  KW  D    + E  +         L   S     F+
Sbjct: 286 DTLEEPQHLDKRFEAIVANPPYSAKWSADDKFQDDERFSNY-----AKLAPKSKADFAFV 340

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLF 398
            H  + L    +  G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F
Sbjct: 341 QHFIHHL----DDNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPGNIF 393

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + +   +K  +    V  I+A++ +      GK +  ++DDQ  +I+D Y+S
Sbjct: 394 FGTSIPTCILVF--KKCRKHDDNVIFIDASNEFEK----GKNQNHLSDDQVEKIVDTYLS 447

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           RE                   + +     + L+         +     L+ + +      
Sbjct: 448 RE---------TIDKYAYAATLDKIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLQAID 498

Query: 519 LKPMMQQIYPYGWAESF 535
            +          + +  
Sbjct: 499 EEIAKVDEELAAYFKEL 515


>gi|291530635|emb|CBK96220.1| type I restriction system adenine methylase (hsdM) [Eubacterium
           siraeum 70/3]
          Length = 534

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 209/560 (37%), Gaps = 69/560 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------- 56
             A  L+N +W  A DL G    + F   IL     R L    E     +          
Sbjct: 10  QQAQELSNKLWAIANDLRGTMDASKFKDYILGIIFYRFLSEKTEKYMEEILKNDGITYAD 69

Query: 57  -------EKYLAFGGSNIDLESFVKVAGYSF----------YNTSEYSLSTLGSTNTRNN 99
                  E   A    ++D   ++    YSF          Y+   +S+  L      + 
Sbjct: 70  ALASNDEELLAALDKYSLDNLGYIIRPEYSFGYIVNMIANKYDGKVFSVDYL-EKAIASI 128

Query: 100 LESYIASFSDNAKA-IFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            +S +   S+ A   IF+  D           ++   + K+    + IE   D     V+
Sbjct: 129 QQSTLGQKSEAAFDGIFDAMDLKDKDLGKEVSDRTKQIAKVINRVNDIEFSYDDAQFDVL 188

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              Y  LI  F S+  +   +F TP  V  L + L      +        ++ + DPTCG
Sbjct: 189 GTAYMILIGLFASDSGKKGGEFFTPSAVSELCSKLATVGLKS--------VKNVCDPTCG 240

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +   L +    V   G   +   +   +GQEL   T+ +    ML+  +          N
Sbjct: 241 SASMLLEVRKAVIANGGTDE-HAVGHYYGQELNGTTYNLARMNMLMHDV-----PYQYFN 294

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333
           +   +TL KD F   +F   ++NPP+  KW      ++         RF G G L   S 
Sbjct: 295 LFNDNTLEKDNFGATKFTVQVANPPYSAKWSASSSFLD-------DPRFSGAGKLAPSSK 347

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVA 392
               F+ H+   ++      GR A++L    LF       E  IRR+L+++ ++++A++ 
Sbjct: 348 ADFAFVEHMVYHMDDD----GRIAVLLPHGVLFRSG---SEDTIRRYLIKDLNVLDAVIG 400

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF  T I     +L   +     G +  I+A+  +T     GK    ++ +   +I
Sbjct: 401 LPANLFHGTGIPVCCLVLRKYRNGN-AGNICFIDASKYYTP----GKNMNQLSAEDIDRI 455

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           ++ YV R++  KF  + +          +  P R     ++     ++A +   K     
Sbjct: 456 VNAYVERKDIDKFCHVAEMSEIEENDFNLNIP-RYVDTFEEEPEIDIKAVMAEIKELESQ 514

Query: 512 QSFWLDILKPMMQQIYPYGW 531
           ++   D +   ++++     
Sbjct: 515 RASLDDEINKYLKELGILED 534


>gi|322372660|ref|ZP_08047196.1| type I restriction-modification system, M subunit [Streptococcus
           sp. C150]
 gi|321277702|gb|EFX54771.1| type I restriction-modification system, M subunit [Streptococcus
           sp. C150]
          Length = 534

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/493 (22%), Positives = 189/493 (38%), Gaps = 72/493 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 50  PTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105
            +       Y  +       E  +       S+      + + L     +    LE    
Sbjct: 61  ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPNLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F     SD     +FED D  S   +L     ++   +  + K  + +++        +
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T 
Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTIYDATM 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  + +     
Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
            +    TL +D        F   L NPP+  KW      ++         RF P   L  
Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ +
Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    
Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438

Query: 451 QILDIYVSRENGK 463
           +IL+ Y SRE+  
Sbjct: 439 KILNAYKSREDMD 451


>gi|282906211|ref|ZP_06314066.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282331503|gb|EFB61017.1| type I restriction-modification system M subunit [Staphylococcus
           aureus subsp. aureus Btn1260]
          Length = 579

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/552 (21%), Positives = 207/552 (37%), Gaps = 69/552 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL       L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +  V++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L    F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H
Sbjct: 346 LENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQH 400

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFR 400
           + + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ 
Sbjct: 401 MVHYLDDE----GTMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYG 453

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  ++
Sbjct: 454 TSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKK 507

Query: 461 N-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K+S     +        +  P R     ++     L+      K      +     +
Sbjct: 508 TIDKYSYSATLQEIDDNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEI 566

Query: 520 KPMMQQIYPYGW 531
              ++++     
Sbjct: 567 NAYLKELGVLKD 578


>gi|312863190|ref|ZP_07723428.1| type I restriction-modification system, M subunit [Streptococcus
           vestibularis F0396]
 gi|311100726|gb|EFQ58931.1| type I restriction-modification system, M subunit [Streptococcus
           vestibularis F0396]
          Length = 534

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 117/495 (23%), Positives = 190/495 (38%), Gaps = 76/495 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------ 48
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 49  --EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS--TNTRNNLESY 103
                  AV  KY  +       +    +     Y      + + L     +    LE  
Sbjct: 61  ESLEEALAVYRKY--YEDEETHEDLLSVITDEMSYAIHPDLTFTALVERVNDGSFQLEDL 118

Query: 104 IASF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
              F     SD     +FED D  S   +L     ++   +  + K  + +++       
Sbjct: 119 AQGFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAG 174

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD 
Sbjct: 175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDA 228

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  + +   
Sbjct: 229 TMGSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF-- 279

Query: 273 SKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GL 328
              +    TL +D        F   L NPP+  KW      ++         RF P   L
Sbjct: 280 ---LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKL 329

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+
Sbjct: 330 APKSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAID 383

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D  
Sbjct: 384 TVIGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAH 436

Query: 449 RRQILDIYVSRENGK 463
             +ILD Y SRE+  
Sbjct: 437 IEKILDAYKSREDMD 451


>gi|315651209|ref|ZP_07904239.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315486505|gb|EFU76857.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 510

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 194/532 (36%), Gaps = 64/532 (12%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              IW  A  LWG     ++ KVI+    LR +  A E     + E+     G   + + 
Sbjct: 12  EKQIWDAACVLWGHIPAAEYRKVIVGLIFLRYISSAFEKRYEELLEE-----GDGFEDDR 66

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----- 126
                   F+   E   S + S+     +   I +     +   E+    + + +     
Sbjct: 67  DAYAEENIFFVPEEARWSKIASSAHTAEIGIVIDNAMREIEK--ENVSLKNVLPKNYAGP 124

Query: 127 LEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
                +L ++   F + +++        ++   YE+ I +F +       +F TP  +V 
Sbjct: 125 DLDKRVLGEVVDLFTNEVKMDGTEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVK 184

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
              A+L           P     +YDP CG+GG    +   V     +      +  +GQ
Sbjct: 185 TIVAIL----------KPFNNCRVYDPCCGSGGMFVQSEKFVQAHSDNRG---SISVYGQ 231

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           E   +T  +    M IR ++++             T   D+    +  + ++NPPF    
Sbjct: 232 ESNADTWKMAKMNMAIRGIDANFGP------YHADTFFNDIHKTLKSDFIMANPPFNLSN 285

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      K  +  R+  G+P   + +  ++ H+ + L       G+  +VL++  L
Sbjct: 286 WGAD-------KLKDDVRWKYGMPPAGNANYAWIQHMIHHLAP----NGKIGLVLANGAL 334

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
                 SGE EIR+ ++E+DL+E IVALPT LF+   I   LW ++  K  +++G+   I
Sbjct: 335 --SSQTSGEGEIRKKIIEDDLVEGIVALPTQLFYSVTIPVTLWFITKNK--KQKGRTLFI 390

Query: 426 NATDLWTSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +A  +   +     K R   +             +   +   +NG     +     G+  
Sbjct: 391 DARKMGYMVDR---KHRDFTEGIQEDGSLGDIDLLAKTFEDFQNG-----VLKERKGFSA 442

Query: 478 I-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           I  +    +  +IL       +E      +      +     L  M ++ + 
Sbjct: 443 IATIKDIAKHDYILTPGRYVGIEEQEDDGEPFEEKMTRLTSELSDMFKKSHE 494


>gi|315158691|gb|EFU02708.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0312]
          Length = 531

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 102/544 (18%), Positives = 209/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLYSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK- 112
                           +    +     Y  S   L  + +   +  +           + 
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFVQL 122

Query: 113 --------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
                    +F+D D  S        ++   + ++ K  + +++        V+ + YE 
Sbjct: 123 SSTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       NI+ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NIRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|254374065|ref|ZP_04989547.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548]
 gi|151571785|gb|EDN37439.1| hypothetical protein FTDG_00226 [Francisella novicida GA99-3548]
          Length = 538

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/579 (16%), Positives = 215/579 (37%), Gaps = 79/579 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            +   +  S+   +W +A  L G  + +++  ++L    L+ +    E  R  +  +   
Sbjct: 4   AKKKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLITE--- 60

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
              + ID+  F       FY   E   + +     ++++        S I   + + K  
Sbjct: 61  GKEAFIDMVEFY-TMENVFYLPEESRWTYIKQNAKQDDIALKIDTALSTIEKNNPSLKGA 119

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             D  FS     + K   L  +    + I    D   + ++  +YE+ + +F     +G 
Sbjct: 120 LPDNYFSRLGLDVSK---LSSLIDTINNINTIADKG-NDIVGRVYEYFLSKFAIAEGKGK 175

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ +V+L   ++                 +YDP CG+GG    ++  +     + 
Sbjct: 176 GEFYTPKSIVNLIANMI-----------EPYKGKIYDPACGSGGMFVQSIKFIEAHKGN- 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE    T+ +    + IR + ++     +       T  KD     +  +
Sbjct: 224 --KKDISIYGQEYTGTTYKLAKMNLAIRGISANLGDVPA------DTFFKDQHPDLKADF 275

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF       +      ++  +  R+ G  +P  S+ +  +++++ +KL    +  
Sbjct: 276 IMANPPFN------QKDWRGANELLDDPRWAGYDVPPKSNANYGWILNIVSKL----SQN 325

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  +L++  L  G     E +IR+ L+ENDL+EAIV LP ++F+ T+I+  +WIL+  
Sbjct: 326 GVAGFILANGALSGGGE---EYKIRKKLIENDLVEAIVILPRNMFYTTDISVTIWILNAN 382

Query: 414 KTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           K +             +R  ++  ++             K    +++  ++I D Y + +
Sbjct: 383 KKQREFEQNGKQKSHRDRSNEILFMDLRQKGVPFEK---KFIQFDEENIQEISDTYHAWQ 439

Query: 461 NGK-------FSRMLDYRTFGYRR-------IKVLRPLRMSFILDKTGLARLEADITWRK 506
           +          S         Y+        + +       + L  +             
Sbjct: 440 SVGKTTPSCSASHPFKEGELVYKDIPEYCKSVTLEEIRAKDYSLVPSKYIEFVNRDENID 499

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
                ++  ++  + + Q+        +  KE     + 
Sbjct: 500 FDEKMKNLQVEFSELLKQEEQSKQELLTVFKELGYEIKL 538


>gi|220934949|ref|YP_002513848.1| type I restriction-modification system specificity subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996259|gb|ACL72861.1| type I restriction-modification system specificity subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 799

 Score =  297 bits (761), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 113/578 (19%), Positives = 208/578 (35%), Gaps = 81/578 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W   ++L G    + +   +L    ++ +                   
Sbjct: 1   MALKKSELYSSLWSGCDELRGGMDASQYKDYVLVLLFIKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122
            +           G SF       ++ L    +  + +   I +   NA  + E  DF+ 
Sbjct: 45  YAGQPYAPITIPPGASFK-----DMAALKGKPDIGDQINKKIIAPLANANQLSEMPDFND 99

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
              +L         L  +   F    L         D ++ + YE+L+R F +E  +   
Sbjct: 100 P-NKLGSGKEMVDRLTNLIAIFEDKRLDFSKNRADGDDILGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   +L      +   S     T+YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRVMAQIL-----GIRNASTSADTTVYDPTCGSGSLLLKVAD---------E 204

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
               +  +GQE +  T  +    M++         + +  I QG+TL+   F      K 
Sbjct: 205 AGTDVTLYGQEKDAATSGLARMNMILHN-------NPTALIMQGNTLADPKFLDGQSLKT 257

Query: 292 FHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELP 349
           F Y ++NPPF  K+W    D     H+     RF   G+P    G   +L+H+   L+  
Sbjct: 258 FDYVVANPPFSDKRWSTGLDPASDPHE-----RFKHYGIPPDKQGDYAYLLHILRSLKST 312

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A +L    LF G A   E++IRR L+    I+ I+ LP +LF+ T I   + +
Sbjct: 313 ----GRGACILPHGVLFRGNA---EADIRRNLVRKGYIKGIIGLPPNLFYGTGIPACIVV 365

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           +        R  + +I+A+  +     +G K R +      +I+D++  +     ++R +
Sbjct: 366 VDKA-EAHGRDGIFMIDASGGFM---KDGPKNR-LRSQDIHKIVDVFTKQAELPGYARRV 420

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                      +  P  +     +    +                QS+W D+   + Q +
Sbjct: 421 PLAEIEKNDYNLNLPRYIDSQQAEDRQDIEGHLRGGIPEADVDALQSYW-DVCPGLRQAL 479

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           +             K++   T+          AFI+A 
Sbjct: 480 FRPNRPGYLDLAVDKADIRATI---YGHPEFTAFIDAM 514


>gi|300866159|ref|ZP_07110878.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506]
 gi|300335838|emb|CBN56038.1| N-6 DNA methylase [Oscillatoria sp. PCC 6506]
          Length = 527

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 111/547 (20%), Positives = 203/547 (37%), Gaps = 62/547 (11%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EKYLAFGGS 65
            +W  A+ L G     ++  ++L    L+ +    E     +         +  L  G  
Sbjct: 23  KLWAAADKLRGQMDSAEYKHIVLGLIFLKSISDQFEERYDQLEIWGLDSSSQFSLPDGND 82

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSST 123
               E    +    F        S L S     N+ + I      A  + E  +   SS 
Sbjct: 83  KFTEEQDCGLTDNRFEIPESVRWSNLKSQANLLNIGNLID----EAMMVIEKENSSLSSI 138

Query: 124 IARLE---KAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + +         L ++    + I+L         ++  +YE+ + RF +   +G  +F T
Sbjct: 139 LPKAYSSLDPRRLSELIAIINTIDLGEKNSSSKDILGRVYEYFLGRFANWEGKG-GEFYT 197

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P+ VV L   +                  +YDP CG+GG    +   V   G        
Sbjct: 198 PQSVVKLLVEMTQPYQG-----------KIYDPCCGSGGIFVQSEKFVLAAGGKAN---D 243

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           ++ +GQE    T  +C   + IR +E++     +       TL+ DL    +  + L+NP
Sbjct: 244 ILIYGQESNQTTWRLCKMNLAIRGIEANIGECNA------DTLNSDLHPDLKADFILANP 297

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF     +        ++  +  R+  G+P  S+ +  ++ H+   L       G A  V
Sbjct: 298 PFNMSDWEG-------YRLHQDQRWHYGIPPASNANFAWIQHIIYHLSDR----GIAGFV 346

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--- 416
           LS+  L +G     E EIR  ++E+DLI+ IVALP+ LF+ T IA  LW ++  K +   
Sbjct: 347 LSNGSLNHG---QVEGEIRSKIIEDDLIDCIVALPSQLFYTTQIAASLWFIAKNKRDDKW 403

Query: 417 -ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            +R G+   I A +            R I DD+  +I + Y    +            G+
Sbjct: 404 RDRAGESLFIYAANFGQMADRT---HRTIADDEIAKIANTYNLWRSRDRINEYKDIP-GF 459

Query: 476 RRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +         L        + ++T +      ++ + D+   + +       A +
Sbjct: 460 CKSATLEEIRYHKMSLVPGRYVGFDENLTKQWDITELRAEFTDVENRIAEIDRASNSALN 519

Query: 535 FVKESIK 541
            +KE + 
Sbjct: 520 VLKELLY 526


>gi|300865423|ref|ZP_07110226.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
 gi|300336582|emb|CBN55376.1| type I site-specific deoxyribonuclease [Oscillatoria sp. PCC 6506]
          Length = 540

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 109/562 (19%), Positives = 199/562 (35%), Gaps = 92/562 (16%)

Query: 1   MTE----FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------- 45
           MT       G    L   +W  A+ L G     +F    L F   + L            
Sbjct: 1   MTNGLNGQNGHKKKLETQLWNIADSLRGKMNADEFRDYCLGFIFYKYLSERQYIYANGVL 60

Query: 46  -----CALE--PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN--- 95
                  LE   +    +E   A    +I    +       F + ++ +L      +   
Sbjct: 61  AEDGIDFLEIDESSEEGQEYLEAIKEESIAELGYFLKPSELFSSLAKRALGNQADKDEIS 120

Query: 96  ----------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLE------------KAGLL 133
                        +L   + +   +      + DF      L+            K  L+
Sbjct: 121 DEELEKSSIFILGDLTDVLNNIERSTMGKESEEDFDHLFEDLDLNSTKLGRTPKAKNALI 180

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            KI  +   I+         V+ + YE+LI +F S   + A +F TP+ V  +   ++  
Sbjct: 181 AKILVHLDKIDFRLGDTESDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSKVLAKIVTT 240

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
             +         ++++YDPTCG+G  L      V   G           +GQE+   T+ 
Sbjct: 241 GKE--------RLKSVYDPTCGSGSLLLRVAREVESVGD---------FYGQEMNRTTYN 283

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +    M++  +        + +++Q  TL      G RF   ++NPPF  +W  +K    
Sbjct: 284 LARMNMILHGVH-----YRNFDLRQEDTLENPQHEGMRFEAVVANPPFSAQWSANKLFES 338

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
            +  +         L  +S     F+ H+ + L    +  G  A+VL    LF G A   
Sbjct: 339 DDRFSQY-----GKLAPVSKADFAFVQHMLHHL----DENGIMAVVLPHGVLFRGGA--- 386

Query: 374 ESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           E  IR++L+ E + ++A++ LP ++F+ T+I T + +L  +K  E    V  I+A+  + 
Sbjct: 387 EGHIRQYLIKERNWLDAVIGLPANIFYGTSIPTCILVL--KKCRESPEDVLFIDASAYFE 444

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
              N    + ++      +I+  Y  R E  K+S              +  P    ++  
Sbjct: 445 KATN----QNLLRAQDVDKIISTYRQRIEEDKYSYRAPLAEIEENNFNLNIP---RYVDT 497

Query: 492 KTGLARLEADITWRKLSPLHQS 513
                 ++      KL    Q 
Sbjct: 498 FEEEEEIDLAAVAAKLRQCDQD 519


>gi|228478347|ref|ZP_04062955.1| type I restriction-modification system, M subunit [Streptococcus
           salivarius SK126]
 gi|228250026|gb|EEK09296.1| type I restriction-modification system, M subunit [Streptococcus
           salivarius SK126]
          Length = 534

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 114/493 (23%), Positives = 190/493 (38%), Gaps = 72/493 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------E 49
           M+E T ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEET 60

Query: 50  PTRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIA 105
            +       Y  +       E  +       S+    + + + L     +    LE    
Sbjct: 61  ESLEEALAVYRKYYEDEETHEDLLAVITDEMSYAIHPDLTFTALVERVNDGSFQLEDLAQ 120

Query: 106 SF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F     SD     +FED D  S   +L     ++   +  + K  + +++        +
Sbjct: 121 GFRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDM 176

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T 
Sbjct: 177 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------KQGFTLYDATM 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +        + P  +V  GQEL   T+ +    M++  +  + +     
Sbjct: 231 GSGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQF---- 279

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
            +    TL +D        F   L NPP+  KW      ++         RF P   L  
Sbjct: 280 -LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMD-------DPRFSPFGKLAP 331

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ +
Sbjct: 332 KSKADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTV 385

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    
Sbjct: 386 IGLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIE 438

Query: 451 QILDIYVSRENGK 463
           +IL+ Y SRE+  
Sbjct: 439 KILNAYKSREDMD 451


>gi|262374615|ref|ZP_06067888.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
 gi|262310405|gb|EEY91496.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
          Length = 522

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 204/532 (38%), Gaps = 82/532 (15%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------------LEPTRSAVRE 57
           W  A  L G     +F   IL F   + L                     L+        
Sbjct: 14  WNIANTLRGTMGADEFRDYILGFIFFKYLSEKSVNFANELLDGEEVSFLELDENNPEHVP 73

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                  + I    +       F+  +E            ++L + + S   +       
Sbjct: 74  YIEEIKKNAIAEVGYALTPKQLFHTLAE---RGRQGEFILDDLTATLKSIEQSTLGTDSA 130

Query: 118 FDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            DF++    L            ++  L+ K+  +   I+         V+ + YE+LI  
Sbjct: 131 DDFANLFEDLDLNSTKLGNNASDRNALVAKVLSHLDDIDFDISNTEADVLGDAYEYLIGE 190

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP+ V  L   ++    D         +R++YDPTCG+G  L     
Sbjct: 191 FASGAGKKAGEFYTPQTVSTLLAKIVTQGKD--------RLRSVYDPTCGSGSLLLRVKR 242

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V D         + + +GQE+   T+ +    M++  +          +I+Q +TL++ 
Sbjct: 243 EVKD---------VDMIYGQEMNRTTYNLARMNMILHDVHF-----AKFDIKQENTLTRP 288

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLA 343
               K+F   ++NPPF   W  D   ++ E       RF     L   S   M F+ H+ 
Sbjct: 289 QHLDKKFDAVVANPPFSANWSADPLFLQDE-------RFAAYGKLAPSSKADMAFVQHML 341

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402
            +L    +  G  A+VL    LF G   S E  IR++L+E  ++++AI+ LP ++F+ T+
Sbjct: 342 YQL----DDNGTMAVVLPHGVLFRG---SSEGVIRQYLIEQMNVVDAIIGLPANIFYGTS 394

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I T + +L  +K  E+   +  I+A++ +   +N    +  +  +   +I+  +  REN 
Sbjct: 395 IPTCILVL--KKNREQSSNILFIDASNEFEKQKN----QNKLLPEHLDKIVAAFGKRENI 448

Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           + ++ +   +        +  P    ++      A ++ D   ++L  L   
Sbjct: 449 EKYAHVATLQEVKDNDYNLNIP---RYVDTFEAEAEIDLDEIAKQLQALEHD 497


>gi|240949256|ref|ZP_04753600.1| Type I restriction-modification system methyltransferase subunit
           [Actinobacillus minor NM305]
 gi|240296372|gb|EER47016.1| Type I restriction-modification system methyltransferase subunit
           [Actinobacillus minor NM305]
          Length = 561

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 100/570 (17%), Positives = 193/570 (33%), Gaps = 82/570 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              L   +WK A+ L       ++  ++L    L+ +  +    +  ++++Y        
Sbjct: 27  LNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQDIIKQRYTDPTSDFY 86

Query: 66  ----------------NIDLESFVKVAGYSFYNTSEYSLSTLG---STNTRNNL--ESYI 104
                               E         F+   +     +      N  + +  E   
Sbjct: 87  LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVVGANIGDKIWGEKTF 146

Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151
              ++     F+          + I R+        +L  +   FS       T+     
Sbjct: 147 KGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVDESILLGLIDLFSNTNFIRPTLDGKPI 206

Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L                
Sbjct: 207 SLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYKG 255

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF       + +   +      +   GQE  P T  +    M IR +E D
Sbjct: 256 RIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEFD 312

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +  +       T S      K+  + ++NPPF  K               +  R+  G
Sbjct: 313 FGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWHPSLAQDLRWQYG 359

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P  S+ +  +L H+   L       GR A++L++  + +      E EIR+ +L+ DL+
Sbjct: 360 IPPESNANFAWLQHMIYHLSP----NGRMALLLANGSMSSNTNN--EGEIRKNILKADLV 413

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ALP+ LF  T I   +WIL+  K    +G+V  I+A  L           R    D
Sbjct: 414 EAMIALPSQLFTNTQIPACIWILNKDKAR--KGEVLFIDARQLGYMKDRV---LRDFTAD 468

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506
              ++ D Y S +    +   +   F Y    +    +  F+L         E +     
Sbjct: 469 DIAKVADTYHSWQQS--ADYQNIPAFCYTA-SLDEIAQNDFVLTPGRYVGAAEQEDDGVP 525

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            +   Q     + +   Q        ++ +
Sbjct: 526 FAEKMQELTALLQQQFKQSAELEAKIKANL 555


>gi|256841217|ref|ZP_05546724.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
 gi|256737060|gb|EEU50387.1| type I restriction-modification system, M subunit [Parabacteroides
           sp. D13]
          Length = 510

 Score =  297 bits (760), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 102/485 (21%), Positives = 187/485 (38%), Gaps = 62/485 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L  F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKGFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112
            ++        G        +      + N  N L      I   +             +
Sbjct: 76  QVEDLPIRIPDGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF   D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +   
Sbjct: 130 GIFGPKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A++F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+
Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGA 238

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
                  +   GQE+   T ++    + +  +E         +I    TL    F     
Sbjct: 239 E---WQSVQVFGQEVNGLTSSIAQMNLYLNGVE-------DFSIACADTLEHPAFLDGSH 288

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L+NPP+  K         ++  N + GR   G P        FL H+   +  
Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFLQHIIASMNE 343

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR AI+     LF       E E+R+ L+E D+++ I+ L  +LF+ + +   + 
Sbjct: 344 TQ---GRCAILFPHGVLFRDE----ELELRKKLVEMDILDCIIGLGANLFYNSPMEACIL 396

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-VSRENGKFSRM 467
           I +  K   ++ +V +INA +  T          ++  +  ++I++ Y  +RE   FSR+
Sbjct: 397 ICNCSKANSKKNRVLMINAVNEVTR----KNAESMLLAEHIQRIVNAYQQNRELDGFSRI 452

Query: 468 LDYRT 472
           +    
Sbjct: 453 VSNDE 457


>gi|237729542|ref|ZP_04560023.1| N4/N6-methyltransferase [Citrobacter sp. 30_2]
 gi|226908148|gb|EEH94066.1| N4/N6-methyltransferase [Citrobacter sp. 30_2]
          Length = 515

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 93/547 (17%), Positives = 190/547 (34%), Gaps = 60/547 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +WK A+ L  +    ++  V+L    L+ +  + E     + +            +
Sbjct: 13  LEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYE-LLKASEGEFAGADPED 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSST 123
                A   F+       + L S           ++    I + +   K +         
Sbjct: 72  KDEYTAYNIFFVPELARWNYLISKARLPEIGKLVDDAMELIEAGNPQLKGVLPKVYARQN 131

Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +     A +L ++      I L         V+ +++E+ +  F     +    F TP+ 
Sbjct: 132 L----DATVLGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKS 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   +L                 ++DP CG+GG    +   V     +      +  
Sbjct: 188 IVSLLVNML-----------EPYKGRVFDPCCGSGGMFVQSEKFVEAHQGNI---DDISI 233

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + S+  R  S+      +   D     +  + ++NPPF 
Sbjct: 234 YGQESNQTTWRLAKMNLAIRGINSEHVRWNSEG-----SFLNDAHKDLKSDFIIANPPFN 288

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +       +     R+  G+P   + +  ++ H    L       G+A +VL+ 
Sbjct: 289 VSDWSGE-------QLRGDARWQYGIPPTGNANFAWMQHFLYHLSPK----GQAGVVLAK 337

Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT-----E 416
             L +    SGE +IR  L+++ ++I+ IV LP  LF  T I   LW +   +       
Sbjct: 338 GALTS--KSSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDRENSSQYR 395

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF-GY 475
           +R  ++  I+A +L   I    K   +++DD  + I D Y +  N       DY    G+
Sbjct: 396 DRSKEILFIDARNLGHLINRRTK---VLSDDDIKTIADTYHNWRNKGG----DYEDVAGF 448

Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              + +    ++ ++L       L  +           +   +    + ++         
Sbjct: 449 CASVDINEVAKLDYVLTPGRYVGLTDEEDDFDFKERFTALKAEFEAQLKEEARLNNTIAE 508

Query: 535 FVKESIK 541
            + + + 
Sbjct: 509 NLAKVVL 515


>gi|295135271|ref|YP_003585947.1| type I restriction-modification system methyltransferase subunit
           like protein [Zunongwangia profunda SM-A87]
 gi|294983286|gb|ADF53751.1| type I restriction-modification system methyltransferase subunit
           like protein [Zunongwangia profunda SM-A87]
          Length = 521

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 99/558 (17%), Positives = 204/558 (36%), Gaps = 71/558 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           + T    S+   +W  A  L G  + +++  V+L    L+      E  R  +  +    
Sbjct: 4   KKTTKEKSIEESLWDAANKLRGSIEPSEYKHVVLGLIFLKFASDKFEVRREELIAE---G 60

Query: 63  GGSNIDLESFVKVAGYSFY-NTSEYSL--STLGSTNTRNNLESYIASF---SDNAKAIFE 116
               ++++ F  +    F   TS ++         +    +++ +      + + K    
Sbjct: 61  KEKYLEMKDFYNMKNVFFLAETSRWNYLIKNAKQDDIALKIDTALNQIEKNNPSLKGALP 120

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D  FS     L+K+  L  +    + I+   D     ++  +YE+ + +F     +G  +
Sbjct: 121 DNYFSRLG--LDKSK-LSALLDTINKIDTQKDK-SQDIVGRVYEYFLSKFALAEGKGKGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ +V+L   ++                 +YDP CG+GG    ++  +      H  
Sbjct: 177 FYTPKSIVNLIAEMI-----------EPYKGIIYDPACGSGGMFVQSIKFIESH---HGS 222

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +GQE    T+ +    + IR + ++     +       T S D     +  Y +
Sbjct: 223 KREISIYGQEYTNTTYKLAKMNLAIRGISANLGDKAA------DTFSNDQHKDLKADYIM 276

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF       +       +  +  R+ G  +P  S+ +  +++++ +KL       G 
Sbjct: 277 ANPPFN------QKDWRGPQELIDDPRWQGYEVPPKSNANYGWILNMVSKLSDD----GV 326

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  +L++  L  G     E +IRR L+EN+L+EAI+ LP ++F+ TNI+  +WIL+  KT
Sbjct: 327 AGFILANGALSGGGE---EYKIRRKLVENNLVEAIIILPQNMFYTTNISVTVWILNRNKT 383

Query: 416 EERR-------------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
              R              +V  ++             K    +  Q + I   Y   +  
Sbjct: 384 AHTRSIGDEERHYRDRHEEVLFMDLRQNGEPFEK---KFIQFSGTQIKDIARTYHDWQQE 440

Query: 462 -------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                   ++           +   ++    + F+     +         +         
Sbjct: 441 DTNYKDIPEYCYSATKADIEKKDFSLVPSKYIEFVNRDENIDFDTKMAGLQTELTDLLQQ 500

Query: 515 WLDILKPMMQQIYPYGWA 532
             D  K ++      G+A
Sbjct: 501 EEDSKKELLDVFKELGYA 518


>gi|297618846|ref|YP_003706951.1| type I restriction-modification system, M subunit [Methanococcus
           voltae A3]
 gi|297377823|gb|ADI35978.1| type I restriction-modification system, M subunit [Methanococcus
           voltae A3]
          Length = 514

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 119/554 (21%), Positives = 214/554 (38%), Gaps = 73/554 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T+       L   +W  A DL G+ +H +F   IL     R L   LE   S + ++   
Sbjct: 5   TKQKEQKNQLNTKLWSIANDLRGNMEHNEFKNYILGVIFYRYLSEKLENRVSNLLKEDNI 64

Query: 62  FGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGSTNTR------NNLESYIASFSD 109
                 + E + +           +Y   EY  ST+ +  T         L   I S ++
Sbjct: 65  TYAEAWNDEEYTEELKEELLDEIGYYIAPEYLFSTMVNKITNTKDFTIEELSKAIGSINE 124

Query: 110 NA-----KAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +      +  FE+   D      +L      ++ L+ K+    + I+   +     V+ +
Sbjct: 125 STLGTKSQDAFENLFDDLDLESNKLGQKVEARSKLMAKVLSKIAEIDFSHEDSEIDVLGD 184

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI +F S   + A +F TP+ V  +   ++      L        +++YDPTCG+G
Sbjct: 185 AYEFLISQFASSAGKKAGEFYTPQQVSKILAKIVTMGKKDL--------KSVYDPTCGSG 236

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L              K   +   +GQE+   T+ +    ML+  +  D       +IQ
Sbjct: 237 SLLLRIS----------KEADVRKFYGQEVISTTYNLARMNMLLHNVSYDK-----FDIQ 281

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGS 335
               L      GK+F   ++NPP+ + W            + +  RF     +   S   
Sbjct: 282 NDDVLENPKHLGKKFDAVVANPPYSQTW--------DNSMHNDDDRFSEYGKMAPNSKAD 333

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALP 394
             F+ H+   L       G  A+VL    LF G A   E  IR++L+ E + ++A++ LP
Sbjct: 334 FAFVQHMIYHLADK----GVMAVVLPHGVLFRGNA---EGTIRKYLIKEKNYLDAVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++FF T I T + +   +K  E    V  I+A++ +      GK + I+ D+   +I+D
Sbjct: 387 SNIFFGTGIPTTILVF--KKCRETGDNVLFIDASNDYEP----GKNQNILRDEDVEKIID 440

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y  R+   K+S +            +  P R     ++     +E      K       
Sbjct: 441 TYKERKAIDKYSAVATLDDIKENDYNLNIP-RYVDTFEEEEPVNMEKVKAEIKELKEQFL 499

Query: 514 FWLDILKPMMQQIY 527
              + L+ ++ ++ 
Sbjct: 500 KQDEDLEKILNELE 513


>gi|170017258|ref|YP_001728177.1| Type I restriction-modification system, M subunit [Leuconostoc
           citreum KM20]
 gi|169804115|gb|ACA82733.1| Type I restriction-modification system, M subunit [Leuconostoc
           citreum KM20]
          Length = 531

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 108/544 (19%), Positives = 208/544 (38%), Gaps = 71/544 (13%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA--------- 61
           L   +W  A+ L G    +++   +L     + L       R    ++            
Sbjct: 5   LEQQLWAAADILRGKMDASEYKNYLLGLVFYKYLSD--SELREVYEQENGQTTDFPTRSI 62

Query: 62  --------FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSD--- 109
                   F   + +L   +++    F   S+ +      +     NL    A F++   
Sbjct: 63  QYQTLMDWFEDDSEELAEIIQLQKGYFIKPSQLFYTYRQQADRYEFNLTDLQAGFNELER 122

Query: 110 ---NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                K +F D D +ST       ++   + ++ +    I+L        V+ + YE+LI
Sbjct: 123 QGDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLF--EHDGDVIGDAYEYLI 180

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +F TP+ V  + + +     +            +YDPT G+G  + + 
Sbjct: 181 GQFAAGAGKKAGEFYTPQAVSRIISEIAAIGQEDR------APFHIYDPTMGSGSLMLNI 234

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             ++++       P  +  HGQEL   T+ +    +++  ++ D       N+  G TL 
Sbjct: 235 RRYLSN-------PKQVHYHGQELNTTTYNLARMNLILHGVDQDRM-----NLNNGDTLD 282

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            D  T +  +F   + NPP+  KW      +  +       RFG  L   S     FL+H
Sbjct: 283 ADWPTEEPHQFDAVVMNPPYSAKWSAADKFLSDQR----FERFG-KLAPKSKADFAFLLH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F+ T
Sbjct: 338 GFYHLKDS----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFYGT 390

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + IL   ++      V  I+A+  +   +     + +++    ++I+  Y  R +
Sbjct: 391 SIPTTVIILKKNRSSR---DVLFIDASQDFDKQKT----QNVLSPKHIQKIVSAYKERTD 443

Query: 462 GK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            + +S +  Y         +  P  +    D+  +  ++      K+         D+L 
Sbjct: 444 TEKYSHVASYDEIKENDFNLNIPRYVDTFEDEAPVDLVKVSDEISKIDQELSEKQSDLLA 503

Query: 521 PMMQ 524
            M +
Sbjct: 504 MMNE 507


>gi|325832722|ref|ZP_08165485.1| type I restriction-modification system, M subunit [Eggerthella sp.
           HGA1]
 gi|325485861|gb|EGC88322.1| type I restriction-modification system, M subunit [Eggerthella sp.
           HGA1]
          Length = 524

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 114/559 (20%), Positives = 210/559 (37%), Gaps = 75/559 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--- 59
           ++   A+ L+  +W  A DL G+   T F   IL       L    E     + ++    
Sbjct: 6   KYQAQASELSQKLWAIANDLRGNMDSTKFRNYILGTIFYSYLSERTEEYMQEILKEDGLT 65

Query: 60  --LAFGGSNIDLESFVKVAGYSFYNTSEYSL---------------------------ST 90
              AF  ++           +  Y     +L                           + 
Sbjct: 66  YEQAFSDADYRPIVEQWSIEHLGYIIKPENLFRELVRKIVRPEGDVDKFSVEDYERAVNE 125

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L  +      E+      ++ K   +D D   T+A  E+  L+ K+    S I+      
Sbjct: 126 LTGSTMGQASEAAFNGLFNDMK--LQDPDLGDTVA--ERTALISKVIVKISEIDFSLSDS 181

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+   Y  LI  F S+  + + +F TP     L   L     D          +T+ 
Sbjct: 182 QFDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA--------KTVG 233

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D TCG+   L +   H+           +   +GQE    T+ +    ML+  ++     
Sbjct: 234 DCTCGSASMLLEVQKHLT-------TGRVGHFYGQENNATTYNLARMNMLMHGVD----- 281

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + +I +G TL +D +   +    + NPP+  K++ +   ++    +G        LP 
Sbjct: 282 YQNFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDANPALLDDPRYSG-----AGKLPP 336

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEA 389
            S     F+ H+   ++      GR A++L    LF G A   E  IR++++++ + ++A
Sbjct: 337 KSHADYAFVEHMIYHMDDDD---GRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNRLDA 390

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ L  +LF  T+I   L +L   K     G V  I+A+  +      GK +  + D+  
Sbjct: 391 VIGLAPNLFHGTSIPVCLLVL-KTKRNGNSGNVLFIDASKEF----KPGKNQNTLEDEHI 445

Query: 450 RQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++I+D YV RE+  KF+ + D          +  P R     ++     LEA     K  
Sbjct: 446 QKIVDAYVKREDVDKFAHVADMAEIEANGWNLNIP-RYVDTFEEEKPVDLEAVRDDLKRI 504

Query: 509 PLHQSFWLDILKPMMQQIY 527
              +   +D  + M++Q+ 
Sbjct: 505 ESEKKAAIDKAELMLRQLG 523


>gi|283796923|ref|ZP_06346076.1| type I restriction-modification system, M subunit [Clostridium sp.
           M62/1]
 gi|291075333|gb|EFE12697.1| type I restriction-modification system, M subunit [Clostridium sp.
           M62/1]
          Length = 522

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 120/567 (21%), Positives = 212/567 (37%), Gaps = 75/567 (13%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48
           M     +    L N +W  A  L G+ +  +F   IL       L               
Sbjct: 1   MDNSIQAHQKELCNKLWAMANALRGNMEAYEFKNYILGMIFYYYLSDRTEKYMANLLKDD 60

Query: 49  ----------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                     E  ++AV E+ L   G  I+ +   +       N S + +  L  +    
Sbjct: 61  GIGYEEAWADEEYKTAVIEEALRDLGYVIEPQYLFRKMVKMVENRS-FDIEFL-QSAINA 118

Query: 99  NLESYIASFS-DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
            +ES I + S ++   +F D    S  ++L     +++ ++ KI  +   I    D    
Sbjct: 119 LMESTIGNDSQEDFDGLFSDMQLDS--SKLGHTVKDRSAVMAKIIASLDEINFGVDDTKI 176

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ N YE+LI +F +   + A +F TP     L   L               ++   DP
Sbjct: 177 DVLGNAYEYLIGQFAATAGKKAGEFYTPSGPAELLCRLACLGLTD--------VKDAADP 228

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L    N+                +GQEL   T+ +    M++R +        
Sbjct: 229 TCGSGSLLLRLKNYANVRN----------YYGQELTSTTYNLARMNMILRGV-----PYR 273

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           + NI  G TL  D F   +F   ++NPP+   W  D   +E E  N         L   S
Sbjct: 274 NFNIYNGDTLEHDYFGDMKFRVQVANPPYSANWSADMHFMEDERFNEY-----GKLAPKS 328

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391
                F+ H+   ++      GRA ++L    LF G A   E  IR+ L++  ++++A++
Sbjct: 329 KADFAFVQHMVYHMDED----GRAVVLLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVI 381

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T I   + +L   +       +  I+A+  + +    GK + I+ +    +
Sbjct: 382 GLPANLFFGTGIPVCVLVLKRERNGN-SDNILFIDASSDFEA----GKNQNILRECDIDK 436

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I++ Y  R++  K++ +   +        +  P  +     +  +   E     RKL   
Sbjct: 437 IVETYERRQDVDKYAHVATMQEIEENGFNLNIPRYVDTFEPEPEIDLNEVAAEIRKL-QS 495

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVK 537
                   LKP   ++      +   K
Sbjct: 496 EIKDIDAELKPFFDELGLDFPFDVEGK 522


>gi|315127914|ref|YP_004069917.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913]
 gi|315016428|gb|ADT69766.1| N-6 DNA methylase [Pseudoalteromonas sp. SM9913]
          Length = 559

 Score =  296 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 93/531 (17%), Positives = 174/531 (32%), Gaps = 100/531 (18%)

Query: 1   MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT          L   +W  A+ L        +   +L    ++ +  A +  +  +   
Sbjct: 1   MTNTEEQQFLTDLEKKLWNAADKLRSTLDAAQYKHAVLGLVFIKYVSDAFKIRQDELISA 60

Query: 59  YLA-FGGSNIDLESF--------------------VKVAGYSFYNTSEYSLSTLGSTN-- 95
           +        +D E F                      +   +F+  ++   S L   N  
Sbjct: 61  FNNPDSDYFLDPEDFGGKESAEYQEELAVELEQRDYYLETNTFWVPTQARWSFLQDNNKT 120

Query: 96  ----------------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
                                   +N    I   +   K +         I +++    L
Sbjct: 121 VIGGAELPIGNDKTIKITSVGHLIDNALDAIEVANPKLKGVLNKQYTRLQIDQVK----L 176

Query: 134 YKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            ++    + I   H       ++ ++YE+++ +F     +    F TP+ +V L   ++ 
Sbjct: 177 AELIDLIATIPFVHASLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPKSIVSLMVQMM- 235

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                           +YDP  G+GGF   + + +            +  +GQE    T 
Sbjct: 236 ----------EPFKGRVYDPAMGSGGFFVQSEHFINAHKGKIG---DVSIYGQEYNHTTW 282

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M IR ++ +  ++ +      +T + D     R  + ++NPPF  K        
Sbjct: 283 QLASMNMAIRGIDFNFGKEPA------NTYTNDQHPDLRADFVMANPPFNMKEW------ 330

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                + +  R+  G P   + +  +L H+        + G   A   + S   N     
Sbjct: 331 -DVGVSDDDPRWAYGTPPSGNANFAWLQHMLYHTAPNGSVGLLLA---NGSMSSNTNN-- 384

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKV 422
            E  IR+ L+E DL+E +VALP  LF  T I   +W L+  K            +RRGKV
Sbjct: 385 -EGAIRKALIEQDLVECMVALPGQLFTNTQIPACIWFLTKNKNARVSASGRQLTDRRGKV 443

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             I+A +L           R        Q+   + + +  + S   D   F
Sbjct: 444 LFIDARNLGYMKDRV---LRDFTQTDLDQVTATFHNWQ--QASDYQDTAGF 489


>gi|239637508|ref|ZP_04678481.1| type I restriction-modification system, M subunit [Staphylococcus
           warneri L37603]
 gi|239596903|gb|EEQ79427.1| type I restriction-modification system, M subunit [Staphylococcus
           warneri L37603]
          Length = 518

 Score =  296 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 119/539 (22%), Positives = 203/539 (37%), Gaps = 81/539 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVRE 57
                L   +W  A DL G+   ++F   IL     R L          AL        E
Sbjct: 9   QQQQELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEAEVAEALSDEEITYEE 68

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI--- 114
            +          E  ++  GY  Y   +   S++         +  I   S   + +   
Sbjct: 69  AWKDEEYREDLKEELIENVGY--YIEPQDLFSSMVKEIENQRFD--IEHLSQAIRKVETS 124

Query: 115 -------------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                        F D D SST  RL     ++  L+ K+  + S +      +   ++ 
Sbjct: 125 TLGQDSEEDFVGLFSDMDLSST--RLGNTVKDRTALIGKVMVHLSELPFVHSDMEIDMLG 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI RF +   + A +F TP+ V  +   ++    D         +R +YDPTCG+
Sbjct: 183 DAYEFLIGRFAANAGKKAGEFYTPQQVSKILAKIVTQGKD--------KLRNVYDPTCGS 234

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L              K   +   +GQE    T+ +    ML+  +     R  + +I
Sbjct: 235 GSLLLRVG----------KETKVYRYNGQERNNTTYNLARMNMLLHDV-----RYENFDI 279

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           Q G TL    F  ++F   ++NPP+   W  D    + E  +         L  +     
Sbjct: 280 QNGDTLENPAFMDEKFDAVVANPPYSAHWSADSKFNDDERFSNY-----GKLAPVKKADY 334

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPT 395
            F+ H+ + L+      G  A+VL    LF  +A   E  IRR+L+E  + ++A++ LP 
Sbjct: 335 AFVQHMIHYLDDE----GTMAVVLPHGVLFRSQA---EGVIRRYLIEEKNYLDAVIGLPN 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T I+T + +   +K  E    V  I+A+  +      GK +  + DD   +I+D 
Sbjct: 388 NLFFGTPISTCILVF--KKCREIDDNVLFIDASQSFEK----GKNQNHLTDDDVNKIVDT 441

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           Y  RE   K+S +            +  P    ++        ++ D   + L  + + 
Sbjct: 442 YSKRETIDKYSYVASLDDIKDNDYNLNIP---RYVDTFEEEESIDLDQVQQDLKDIDKE 497


>gi|198284106|ref|YP_002220427.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665706|ref|YP_002426761.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198248627|gb|ACH84220.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517919|gb|ACK78505.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 537

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 122/572 (21%), Positives = 220/572 (38%), Gaps = 85/572 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MTE   +   L N +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTE--QNQKQLGNTLWSIADQLRGAMDADDFRDYMLSFLFLRYLSDNYETAAKKELGRDY 58

Query: 60  LAFGGSN-------------IDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRN 98
              GG                D+ +F K      +          S  +L+   + +  +
Sbjct: 59  PDVGGDARKVPLALWYANNVDDIPAFEKQMRRKVHYVIQPAHLWNSIANLARTQNPDLLD 118

Query: 99  NLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
            L++   YI   SF    + +F + D SS   +L     ++   L  I +  +   L   
Sbjct: 119 TLQAGFKYIETESFESTFQGLFSEIDLSS--PKLGKSYSDRNAKLCTIIQKIAE-GLAAF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F +   + A +F TP+ +  + +A++          +   + +
Sbjct: 176 STNIDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGTKKRLDS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +    V   G           +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRKKVNQAGGSIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287

Query: 269 RRDLSKNIQQGSTLSK------DLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL        +    ++  F   ++NPPF  +WE             +
Sbjct: 288 --DTEFEIFHGDTLLNEWDMLREQNPARKPSFDAVVANPPFSYRWEPTDA-------LAD 338

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR 
Sbjct: 339 DVRFKSHGLAPKSAADFAFLLHGFHYLKDE----GVMAIILPHGVLFRGGA---EERIRT 391

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ ++ LP +LF+ T I   + +L   K       V  INA + +      GK
Sbjct: 392 KLLKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFVK----GK 444

Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-- 496
           ++  ++D+   +I++ Y  R E  +++R +D          +     +S  +D+  +   
Sbjct: 445 RQNHLSDEHIAKIIETYQFRTEEPRYARRVDMAEIEKNDFNLNISRYISTAVDEEEIDLT 504

Query: 497 -----RLEADITWRKLSPLHQSFWLDILKPMM 523
                 +  +   ++ +  H  F  ++  P++
Sbjct: 505 ATHANLVNIEKAIQQATAKHNEFLKELGMPLL 536


>gi|182412907|ref|YP_001817973.1| type I restriction-modification system, M subunit [Opitutus terrae
           PB90-1]
 gi|177840121|gb|ACB74373.1| type I restriction-modification system, M subunit [Opitutus terrae
           PB90-1]
          Length = 547

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 114/567 (20%), Positives = 200/567 (35%), Gaps = 93/567 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT        L   +W  A+ L G     DF   +L F  LR L    +   +  +   Y
Sbjct: 1   MTH--QDQQRLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYDVAAKKELGSDY 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLST---------LGSTNTRNNLE--------- 101
             F   +  +   +  A                       +   +   N+          
Sbjct: 59  PKFAADDPRVPLAIWYANNPGDVV---DFEKQMRRKVHYVIKPDHLWANIANLARSESDE 115

Query: 102 ---------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145
                     YI   SF    + +F + +  S   +L     EK   L  I K  +   L
Sbjct: 116 LLETLKAGFDYIENESFQSTFQGLFSEINLYS--EKLGRSQSEKNKKLCGIIKKIAD-GL 172

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
              +     + + YE+LI +F +   + A +F TP+ +  + + ++              
Sbjct: 173 KEFSTDTDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISTILSRIVTLDSQEPKTGKVPH 232

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           + +++D  CG+G  L +    +   G            GQE    T+ +    ML+  ++
Sbjct: 233 LGSVFDFACGSGSLLLNVRKQMGAHGIG-------RIFGQEKNITTYNLARMNMLLHGVK 285

Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                D    I  G TL+ D             +F   ++NPPF  +W       E + +
Sbjct: 286 -----DTEFEIYHGDTLTNDWDFLRETNPAKMPKFDAVVANPPFSLRW-------EPKDE 333

Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            GE  RF   G+   S     FL+H  + L+      G  AI+L    LF G A   E  
Sbjct: 334 LGEDVRFKNHGIAPKSAADFAFLLHGFHYLKDQ----GVMAIILPHGVLFRGGA---EER 386

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR  LL++  I+ ++ LP +LF+ T I   + +L   K       V  INA + +     
Sbjct: 387 IRTKLLKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFDK--- 440

Query: 437 EGKKRRIINDDQRRQILDIYVSR-ENGKFSRM--LDYRTFGYRRIKVLRPLRMSFILDKT 493
            GK++ ++ ++   +I+  Y  R E  ++S+   +D        + + R     +I    
Sbjct: 441 -GKRQNVLTEEHLEKIVATYQLRKEEARYSKRVAMDRIEAEGYNLNISR-----YISTAE 494

Query: 494 GLARLEADITWRKLSPLHQSFWLDILK 520
               ++   T   L  + +       K
Sbjct: 495 QEEEIDLTATHTNLVEIEKRIQTAAQK 521


>gi|73661362|ref|YP_300143.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72493877|dbj|BAE17198.1| putative type I restriction-modification system methyltransferase
           subunit [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 518

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 117/553 (21%), Positives = 214/553 (38%), Gaps = 78/553 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------E 57
              A L   +W  A DL G+   ++F   IL     R L    E   +           E
Sbjct: 9   QQQAELHKRLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAETEVAEALSGEDLTYEE 68

Query: 58  KYLAFGGSNIDLESFVKVAGY------------SFYNTSEYSLSTLGSTNTRNNLESYIA 105
            +          +  ++  GY            +      + +  L     +    +   
Sbjct: 69  AWEDEEYREDLKDELIENVGYYIEPQDLFSSMVTEIENQRFDIEHLVQAIRKVETSTLGQ 128

Query: 106 SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +  ++   +F D D SST  RL     E+  L+ K+  N   +      +   ++ + YE
Sbjct: 129 NSEEDFIGLFSDMDLSST--RLGNTVKERTALISKVMVNLGDLPFVHSDMEIDMLGDAYE 186

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI RF +   + A +F TP+ V  +   ++    D         +R +YDPTCG+G  L
Sbjct: 187 FLIGRFAANAGKKAGEFYTPQQVSKILAQIVTLGKD--------KLRNVYDPTCGSGSLL 238

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                         K   +   +GQE    T+ +    ML+  +  +     + +IQ   
Sbjct: 239 LRVG----------KETTVYRYNGQERNNTTYNLARMNMLLHDVRFE-----NFDIQNDD 283

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL    F G++F   ++NPP+  KW  D    + E  +         L   S     F+ 
Sbjct: 284 TLENPAFEGEKFDAVVANPPYSAKWSADSKFNDDERFSNY-----GKLAPKSKADFAFIQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ + L+      G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F+
Sbjct: 339 HMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +   +K  E    V  I+A++ +      GK +  + D+Q  +I+  Y +R
Sbjct: 392 GTSIPTCVLVF--KKCREADQDVLFIDASNEFEK----GKNQNHLTDEQVEKIIATYKNR 445

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E   K+S   + +        +  P    ++        ++ D   + L+ +      D 
Sbjct: 446 EAVDKYSYAANLKEIDENDYNLNIP---RYVDTFEEEEPVDLDKVQQDLNQID-----DE 497

Query: 519 LKPMMQQIYPYGW 531
           +  + ++I  Y  
Sbjct: 498 IAQVEKEIDGYLK 510


>gi|167626409|ref|YP_001676909.1| type I restriction-modification system methyltransferase
           subunit-like protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596410|gb|ABZ86408.1| type I restriction-modification system methyltransferase subunit
           like protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 531

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 99/575 (17%), Positives = 217/575 (37%), Gaps = 74/575 (12%)

Query: 1   MT--EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT  +   +  S+   +W +A  L G  + +++  ++L    L+ +    E  R  +  +
Sbjct: 1   MTQAKNKANTKSMEETLWDSANKLRGSVESSEYKHIVLGLIFLKFVSDTFEERREQLIAE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                 + ID+  F       FY   E   S +     ++++        S I   + + 
Sbjct: 61  ---GKEAFIDMVEFY-TMENVFYLPEESRWSYIKQNAKQDDIALKIDTALSTIEKNNPSL 116

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K    D  FS     + K   L  +    + I    D   + ++  +YE+ + +F     
Sbjct: 117 KGALPDNYFSRLGLDVSK---LSSLIDTINNINTIADKG-NDIVGRVYEYFLSKFAIAEG 172

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G  +F TP+ +V+L   ++                 +YDP CG+GG    ++  +    
Sbjct: 173 KGKGEFYTPKSIVNLIANMI-----------EPYKGKIYDPACGSGGMFVQSIKFIEAHK 221

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +      +  +GQE    T+ +    + I  + ++     +       T  KD     +
Sbjct: 222 GN---KKDISIYGQEYTGTTYKLAKMNLAICGISANLGDVPA------DTFFKDQHPDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPP 350
             + ++NPPF       +      ++  +  R+ G  +P  S+ +  +++++ +KL    
Sbjct: 273 ADFIMANPPFN------QKDWRGVNELLDDPRWAGYDVPPKSNANYGWILNIVSKL---- 322

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G A  +L++  L  G     E +IR+ L+ENDL+EAI+ LP ++F+ TNI+  +WIL
Sbjct: 323 SQNGVAGFILANGALSGGGE---EYKIRKKLIENDLVEAILILPQNMFYTTNISVTIWIL 379

Query: 411 SNRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           +  K +             +R  ++  ++             K    ++   ++I + Y 
Sbjct: 380 NANKKQREFEQNGKQKNHRDRTKEILFMDLRQKGVPFEK---KFIQFDEKNIQEISNTYH 436

Query: 458 SRENGKFSRMLDYRTFGYRR-------IKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           + ++      +D  + GY+        + +   +   + L  +                 
Sbjct: 437 TWQSIGGHSKIDSESQGYKDIPEYCKSVTLDEVIAKDYSLVPSKYIEFVNRDENIDFDEK 496

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            ++   +  + + Q+           KE     + 
Sbjct: 497 MKNLQTEFRELLKQEEQSKKELLKVFKELGYEIKL 531


>gi|307824515|ref|ZP_07654740.1| type I restriction-modification system, M subunit [Methylobacter
           tundripaludum SV96]
 gi|307734499|gb|EFO05351.1| type I restriction-modification system, M subunit [Methylobacter
           tundripaludum SV96]
          Length = 818

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 102/505 (20%), Positives = 192/505 (38%), Gaps = 74/505 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W   ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKSELYSSLWSGCDELRGGMDASQYKDYVLVLLFIKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122
            + +     +   G SF       +       +  + +   I +   NA  + +  DF+ 
Sbjct: 45  YAGVPYAPIIIPEGASFK-----DMVAFKGKPDIGDQINKKIIAPLANANKLSDMPDFND 99

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
             ++L         L  +   F    L         D ++ + YE+L+R F +E  +   
Sbjct: 100 P-SKLGSGQEIVERLTNLIAIFENKALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++   D            T+YDP CG+G  L    +         +
Sbjct: 159 QFYTPAEVSRIMAQIIGIRDA-----CTTNDTTVYDPACGSGSLLLKVGD---------E 204

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
               +  +GQE +  T  +    M++         + +  I+QG+TL+  LFT      K
Sbjct: 205 AHAKVTLYGQEKDAATSGLARMNMILH-------DNPTALIKQGNTLANPLFTSDDGQLK 257

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELP 349
            F Y ++NPPF  K    + +   +  N    RF   G P    G   +L+H+   L+  
Sbjct: 258 TFDYVVANPPFSDK----RWSTGIDPLNDPHRRFHDFGTPPDKQGDYAYLLHIVRSLKST 313

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+ A +L    LF G A   E++IR+ L+    I+ I+ LP +LF+ T I   + +
Sbjct: 314 ----GKGACILPHGVLFRGNA---EADIRKNLIRKGYIKGIIGLPANLFYGTGIPACIIV 366

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           +       R+G + +I+A+  +     +G K R + D    +I+D++  R    K+SRM+
Sbjct: 367 IDKENAHTRKG-IFMIDASSGYI---KDGNKNR-LRDMDIHRIVDVFNKRLEVAKYSRMV 421

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKT 493
                      +  P  +     + 
Sbjct: 422 GVEEIEKNEFNLNIPRYIDSQQAED 446


>gi|332364614|gb|EGJ42383.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1059]
          Length = 533

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 214/571 (37%), Gaps = 73/571 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR- 52
           E T ++ SL   +W +A+ L       D+   +L     + L   L         E T  
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKLLFFVAETMEEETES 61

Query: 53  -SAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
                  Y ++       E  +       ++    + + + L          LE     F
Sbjct: 62  LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPDLTFTALVDRVNEGTFQLEDLAQGF 121

Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                  +  + +FED D  S   +L     +   ++  + K  + +++        ++ 
Sbjct: 122 RDIEQCDELYENLFEDIDLYSK--KLGATPQKANSVVGAVMKELAVLDV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      ++         RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLQ-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDTHIEKI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y SRE   KF+ +  Y         +  P  +    ++      E        +   
Sbjct: 440 LEAYKSREEIDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAI 499

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           +S    +L+ + Q       A++ +K+ +K 
Sbjct: 500 ESQTASLLEMLNQLHGTTPEADAELKQFLKE 530


>gi|17227995|ref|NP_484543.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120]
 gi|17129844|dbj|BAB72457.1| type I site-specific deoxyribonuclease [Nostoc sp. PCC 7120]
          Length = 537

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 105/564 (18%), Positives = 201/564 (35%), Gaps = 89/564 (15%)

Query: 1   MTE-FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------ 47
           MT    G    L   +W  A+ L G     +F    L F   + L               
Sbjct: 1   MTNGQNGQKKKLETQLWNIADSLRGKMNADEFRDYCLGFIFYKYLSERQHLYANEVLAED 60

Query: 48  ------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTRNN 99
                 ++ +    +E   A    +I    +       F + +E +L   T    N  + 
Sbjct: 61  GIDFINIDESSKEGQEYLEAIKEESIATLGYFLKPSELFSSLAERALGAKTASEENLADE 120

Query: 100 LESYIASFSDNAKAIFEDF-----------DFSSTIARLE------------KAGLLYKI 136
                    D+   +               DF      L+            K  L+ KI
Sbjct: 121 DFEASNFILDDLTQVLSSIERSTMGKESEEDFDHLFEDLDLTSTKLGRTPKAKNALIAKI 180

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
             + + I+   +     V+ + YE+LI +F S   + A +F TP+ V  +   ++     
Sbjct: 181 LVHLNKIDFRLEDTESDVLGDAYEYLIGQFASGAGKKAGEFYTPQQVSKVLAKIVTTGK- 239

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                    ++++YDPTCG+G  L      V   G           +GQE+   T+ +  
Sbjct: 240 -------SRLKSVYDPTCGSGSLLLRVAREVESVGD---------FYGQEMNRTTYNLAR 283

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++  +        + +++Q  TL      G RF   ++NPPF  +W  +K     + 
Sbjct: 284 MNMILHGVH-----YRNFDLRQEDTLENPQHEGMRFEAVVANPPFSAQWSANKLFESDDR 338

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +         L   S     F+ H+ + L    +  G  A+VL    LF G A   E  
Sbjct: 339 FSQY-----GKLAPASKADFAFVQHMIHHL----DDNGIMAVVLPHGVLFRGAA---EGH 386

Query: 377 IRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           IR++++ E + ++A++ LP ++F+ T+I T + +   +K  E    +  I+A+  +   +
Sbjct: 387 IRKYVIKERNWLDAVIGLPANIFYGTSIPTCILVF--KKCRENPDDILFIDASAYFEKAK 444

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           N    +  + D+   +I+  Y  R   + +S              +  P    ++     
Sbjct: 445 N----QNYLRDEDVEKIVSTYRQRIQSEKYSYRAPLTEIAENDFNLNIP---RYVDTFEE 497

Query: 495 LARLEADITWRKLSPLHQSFWLDI 518
              ++ D   R++  + +      
Sbjct: 498 EEEIDLDAVAREIREIDREMVETD 521


>gi|157159201|ref|YP_001463944.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
 gi|157081231|gb|ABV20939.1| N4/N6-methyltransferase family protein [Escherichia coli E24377A]
          Length = 515

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/547 (16%), Positives = 191/547 (34%), Gaps = 60/547 (10%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
           L   +WK A+ L  +    ++  V+L    L+ +  + E     + +            +
Sbjct: 13  LEVILWKAADKLRKNIDAAEYKHVVLGLIFLKYISDSFESHYE-LLKAGEGEFAGADPED 71

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSST 123
                A   F+       + L S           ++    I + +   K +         
Sbjct: 72  KDEYTAYNIFFVPELARWNYLISKAKLPEIGKLVDDAMELIEAGNPQLKGVLPKVYARQN 131

Query: 124 IARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +     A +L ++      I L         V+ +++E+ +  F     +    F TP+ 
Sbjct: 132 L----DATVLGELIDLIGNIALGDAKARSADVLGHVFEYFLGEFALAEGKQGGQFYTPKS 187

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L   +L                 ++DP CG+GG    +   V     +      +  
Sbjct: 188 IVSLLVNML-----------EPYKGRVFDPCCGSGGMFVQSEKFVEAHQGNI---DDISI 233

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE    T  +    + IR + S+  R  ++      +   D     +  + ++NPPF 
Sbjct: 234 YGQESNQTTWRLAKMNLAIRGINSEHVRWNNEG-----SFLNDAHKDLKSDFIIANPPFN 288

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +       +     R+  G+P   + +  ++ H    L       G+A +VL+ 
Sbjct: 289 VSDWSGE-------QLRGDARWQYGIPPAGNANFAWMQHFLYHLSPK----GQAGVVLAK 337

Query: 363 SPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKT-----E 416
             L +    SGE +IR  L+++ ++I+ IV LP  LF  T I   LW +   +       
Sbjct: 338 GALTS--KSSGEGDIRAALVKDANVIDCIVNLPAKLFLNTQIPAALWFMRRDRENSSHYR 395

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF-GY 475
           +R  ++  I+A +L   I    K   +++D+  + I D Y +  N       DY    G+
Sbjct: 396 DRSKEILFIDARNLGHLINRRSK---VLSDEDIKTIADTYHNWRNKGG----DYEDVAGF 448

Query: 476 RR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              + +    ++ ++L       L  +           +   +    + ++ +       
Sbjct: 449 CASVDINEVAKLDYVLTPGRYVGLADEEDDFDFKERFTALKAEFEAQLEEEAHLNKSIAE 508

Query: 535 FVKESIK 541
            + + + 
Sbjct: 509 SLAKVVL 515


>gi|260913242|ref|ZP_05919724.1| type I restriction-modification system [Pasteurella dagmatis ATCC
           43325]
 gi|260632829|gb|EEX50998.1| type I restriction-modification system [Pasteurella dagmatis ATCC
           43325]
          Length = 537

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 186/504 (36%), Gaps = 77/504 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT+       L   +W  A+ L G     DF   +L F  LR L    E        K  
Sbjct: 1   MTQ--EQLNQLGKTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGKDY 58

Query: 61  AFGGSNIDLESFVKVAGYS----------------------FYNTSEYSLSTLGSTNTRN 98
                +          G +                      F   S   L+ + S    N
Sbjct: 59  PQLADDDRRTPLSVWYGENADFVADFEKQMRRKVHYVIKPEFLWGSVAELARIQSDQLLN 118

Query: 99  NLE---SYI--ASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPD 148
            L+    YI   SF      +F + + +S   +L K        L +I K  +   +   
Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNS--EKLGKNYDKRNDRLVEIVKCIAE-GISEF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F S   + A +F TP+ V  + + ++          +   +  
Sbjct: 176 STDSDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTVLSRIVTLDSQNPASGNKIKLDN 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +  + +A    H         +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRHQMAQNNGHIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D   +I  G +L  D              F   ++NPPF  +WE  +       +   
Sbjct: 288 --DTEFSIHHGDSLLNDWDILNETNPAKKLTFDAVIANPPFSYRWEPKE-------ELAN 338

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L    +  G  AI+L    LF   A   E +IR+
Sbjct: 339 DFRFKNYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRSGA---EEKIRK 391

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ I+ LP +LF+ T I   + +L   K +     V  INA D +      GK
Sbjct: 392 KLLKDGHIDTIIGLPANLFYSTGIPVCVLVLKKCKKD---DDVLFINAADDFEK----GK 444

Query: 440 KRRIINDDQRRQILDIYVSRENGK 463
           ++  + D+   +I+D Y  R+  +
Sbjct: 445 RQNRLTDEHIDKIVDCYQFRKEEQ 468


>gi|89898854|ref|YP_521325.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89343591|gb|ABD67794.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 544

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/564 (19%), Positives = 191/564 (33%), Gaps = 83/564 (14%)

Query: 1   MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  E      +L   +W  A+ L      +++  V+L    L+ +  A +  R  ++  +
Sbjct: 1   MNDEEQQYLNNLDKQLWAAADRLRAAVNPSEYMHVVLGLVFLKYISDAFKERRLELQAAF 60

Query: 60  LAFGGS---NIDLESFVK---------VAGYSFYNTSEYSLSTLGSTN-----------T 96
                      D +  +               F+  +      L                
Sbjct: 61  QDPANDYYLGTDADELIAQELEARDYYTETNVFWVPALARWDFLKDNAKVAIDTVLTVKN 120

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKA-------GLLYKICKNFSGIELHP 147
               E              E  +  +   +  L+K+         L  +   FS I  + 
Sbjct: 121 GKTFEYKFKGIGRLLDDALEAVEKDNPKLKGVLDKSYARWRVDEALPGLIDEFSKIPFNH 180

Query: 148 DTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +    ++ +IYE+ +  F     +   +F TP+ +V +   +L               
Sbjct: 181 GALKAKDILGHIYEYFLGEFSIAAGKRGGEFYTPKSIVSVIVEML-----------EPFE 229

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG+GGF   +   V + G        L  +GQE  P T  +    M IR L+ 
Sbjct: 230 GRVYDPCCGSGGFFVQSERFVLEHGGKIG---QLSIYGQEFNPTTWRLASMNMAIRGLDF 286

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D  ++ +      ST ++      R  + ++NPPF  K  K       E    +  R+  
Sbjct: 287 DFGKEPA------STYTRPQHPDLRADFIMANPPFNMKAWK-------EGVKDDDPRWKY 333

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P   + +  ++ H+ + L      G  A ++ + S   N      E EIR+ L+E DL
Sbjct: 334 GVPPDGNANFAWMQHMIHHLAPH---GSMALLLANGSMSSNTNN---EGEIRKALIEADL 387

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEE-----RRGKVQLINATDLWTSIRNEGKKR 441
           +E +VALP  LF  T I   +W L+  K E      R G+V  I+A  L           
Sbjct: 388 VECMVALPGQLFTNTQIPACIWFLTRSKAERKAKRSRHGEVLFIDARQLGYMKDRV---L 444

Query: 442 RIINDDQRRQILDIYVSRE-------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           R    +   ++ D + + +          F +       G     VL P R      +  
Sbjct: 445 RDFKPEDLAKVADTFHAWQRGVGYADEAGFCKAATLADIGKADY-VLTPGRYVGAAAQEA 503

Query: 495 LARLEADITWRKLSPLHQSFWLDI 518
            A    D   R  + L   F    
Sbjct: 504 DAEPFEDKMARLTAALGDQFKESA 527


>gi|300113975|ref|YP_003760550.1| adenine-specific DNA-methyltransferase [Nitrosococcus watsonii
           C-113]
 gi|299539912|gb|ADJ28229.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus watsonii C-113]
          Length = 570

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 105/609 (17%), Positives = 195/609 (32%), Gaps = 115/609 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M         +L + +WK A+ L  +    ++  V+L    L+ +  A E  + A+ E++
Sbjct: 1   MNNPEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEALLERF 60

Query: 60  LAFGGS--NIDLESFVKVAGY------------------SFYNTSEYSLSTLGSTNTR-- 97
                    +  E F     Y                   F+       STL        
Sbjct: 61  KDENDDIYYLPREDFDSDEDYQQALQEELEILDYYREANVFWVPKAARWSTLKEKAVLPV 120

Query: 98  ----------------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
                                 +N    I   +   K I              +   L  
Sbjct: 121 GTVLWQDDTGHDVKLRSVSWLMDNALEAIEKSNAKLKGILNRISQYQL-----ENDKLLG 175

Query: 136 ICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   FS              D     ++ ++YE+ + +F     +    + TP+ +V L 
Sbjct: 176 LINTFSDTSFTKPMFDGEQLDLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLI 235

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVP 242
            A+L                 +YDP  G+GGF   +   + +    H     +    +  
Sbjct: 236 VAML-----------EPYSGRVYDPAMGSGGFFVSSDKFIEEHAKEHHYDPSEQKKHISV 284

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    M IR ++ +  +      +   T   D     R  + ++NPPF 
Sbjct: 285 YGQESNPTTWRLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFN 338

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K               +  R+  G P   + +  ++ H+ + L      G  A ++ + 
Sbjct: 339 MK-------DWWSESLADDARWQYGTPPKGNANFAWMQHMIHHLAPT---GSMALLLANG 388

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS---------NR 413
           S   +     G   IR+ L+E DL+E + ALP  LF  T I   +W L+         N 
Sbjct: 389 SMSSHTNNEGG---IRQRLVEEDLVECMAALPGQLFTNTQIPACIWFLTRDKANGLVRNE 445

Query: 414 KTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K  +RR +   I+A +L +   R      R    D   +I D + + + G+    +    
Sbjct: 446 KKRDRREEFLFIDARNLGFMRDRVL----RDFTVDDIAKIADTFHAWQRGEHYEDVA--- 498

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+ +   +    +  F+L                           +   + +Q      
Sbjct: 499 -GFCKSASLDEIKKHDFVLTPGRYVGAREQ---EDDGEPFAEKMARLTGQLQEQFVESER 554

Query: 532 AESFVKESI 540
            E+ +K ++
Sbjct: 555 LEAEIKRNL 563


>gi|327467251|gb|EGF12755.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK330]
          Length = 533

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 213/571 (37%), Gaps = 73/571 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR- 52
           E T ++ SL   +W +A+ L       D+   +L     + L   L         E T  
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVAETMEEETES 61

Query: 53  -SAVREKYLA-FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRN--NLESYIASF 107
                  Y + +   +   +    +     Y      + + L          LE     F
Sbjct: 62  LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPALTFTALVDRVNEGTFQLEDLAQGF 121

Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                  +  + +FED D  S   +L     ++  L+  + K  + +++        ++ 
Sbjct: 122 RDIEQCDELYENLFEDIDLYSK--KLGATPQKQNQLVAAVMKELAVLDV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDE------QGFTLYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +   GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKYSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLH-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439

Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L  Y SRE+ + F+ +  Y         +  P  +    ++      E        +   
Sbjct: 440 LKAYKSREDMEKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAI 499

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           +S  + +L+ + Q       A++ +K+ +K 
Sbjct: 500 ESQTVSLLEMLNQLHGTTPEADAELKQFLKE 530


>gi|85711747|ref|ZP_01042803.1| type I restriction-modification system methylation subunit
           [Idiomarina baltica OS145]
 gi|85694362|gb|EAQ32304.1| type I restriction-modification system methylation subunit
           [Idiomarina baltica OS145]
          Length = 571

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/610 (16%), Positives = 196/610 (32%), Gaps = 116/610 (19%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M          L + +WK A+ L  +    ++  V+L    L+ +  A E  +  +    
Sbjct: 1   MDNTEQKFLKQLDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEQLLELF 60

Query: 57  -------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96
                              E+Y       +++  + + A   F+       STL      
Sbjct: 61  KTDDEDNLYYLPRDDFDSNEEYQEALTEELEVLDYYREA-NVFWVPKAARWSTLKEKAVL 119

Query: 97  -----------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
                                   +N    I   +   K I              +   L
Sbjct: 120 PIGSVLWKDDAGNDVKLRSVSWLIDNALEEIEKSNSKLKGILNRISQYQL-----ENEKL 174

Query: 134 YKICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
             +   FS              +     ++ ++YE+ + +F     +    + TP+ +V 
Sbjct: 175 IGLINAFSDTSFTKPVLGGERLNLQSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVT 234

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPIL 240
           L   +L                 +YDP  G+GGF   +   + +          +    +
Sbjct: 235 LIVEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIEEHAKEQHYDASEQRKHI 283

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE  P T  +    M IR ++ +  +      +   +   D     R  + ++NPP
Sbjct: 284 SVYGQESNPTTWRLAAMNMAIRGIDFNFGK------KNADSFLNDQHADLRADFVMANPP 337

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F  K               +  R+  G P   + +  ++ H+ + L       G   I+L
Sbjct: 338 FNIK-------DWWNESLADDVRWKYGTPPKGNANFAWVQHMLHHLAPT----GSMGILL 386

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT----- 415
           ++  + +      E EIR+ L+E DL+E +VALP  LF  T I   +W L+  K      
Sbjct: 387 ANGSMSSNTNN--EGEIRKRLIEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGMVR 444

Query: 416 ----EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                +RRG+   I+A +L           R   +D   ++ D +   + G+    +   
Sbjct: 445 NEKKRDRRGEFLFIDARELGYMKDRV---LRDFTNDDIAKVADTFHMWQQGESYEDIA-- 499

Query: 472 TFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             G+ + + +    +  F+L        +                  +   + +Q     
Sbjct: 500 --GFCKSVNLDEIKKHDFVLTPGRYVGAKEQ---EDDGEPFNKKMARLTAQLSEQFAESE 554

Query: 531 WAESFVKESI 540
             E+ +K ++
Sbjct: 555 RLEAEIKRNL 564


>gi|157151457|ref|YP_001449876.1| type I restriction-modification system, M subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157076251|gb|ABV10934.1| type I restriction-modification system, M subunit [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 535

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 125/571 (21%), Positives = 213/571 (37%), Gaps = 73/571 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR- 52
           E T ++ SL   +W +A+ L       D+   +L     + L   L         E T  
Sbjct: 4   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVAETMEEETES 63

Query: 53  -SAVREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
                  Y  +       E  +       ++    + + + L          LE     F
Sbjct: 64  LDEALALYRTYYEDPDSQEDLITVITDELNYVIKPDLTFTALVDRVNEGTFQLEDLAQGF 123

Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                  +  + +FED D  S   +L     ++  L+  + K  + +E+        ++ 
Sbjct: 124 RDIEQCDELYENLFEDIDLYSK--KLGATPQKQNQLVAAVMKELAVLEV--AGHAGDMLG 179

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G+
Sbjct: 180 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDE------QGFTLYDATMGS 233

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +   GQEL   T+ +    M++  +  + +      +
Sbjct: 234 GSLLLNAKKYSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVENQF-----L 281

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 282 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN-------DPRFSPFGKLAPQS 334

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 335 KADFAFLLHGYYHLKQDK---GVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 388

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 389 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 441

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y SRE   KF+ +  Y         +  P  +    ++      E      + +   
Sbjct: 442 LEAYKSREEMDKFAHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINETNKAI 501

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           +S    +L+ + Q       A++ +K+ +K 
Sbjct: 502 ESQTASLLEMLNQLHGTTPEADAELKQFLKE 532


>gi|315445330|ref|YP_004078209.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315263633|gb|ADU00375.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 810

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/481 (21%), Positives = 190/481 (39%), Gaps = 74/481 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L   +WK+ ++L G    + +   IL    ++ +                   
Sbjct: 1   MALKKSDLYTSLWKSCDELRGGMDASQYKDYILTLLFVKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
                       AG SF    +  L+  G     + +   IA+ ++    + + +  DF+
Sbjct: 45  AKADPNSLIDVPAGGSF----DDMLAAKGDKEIGDRMNKIIAALAEANGLQKVIDLADFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAED 176
               +L K       L  +   F+ ++        D ++ + YE+L+R F +E  +    
Sbjct: 101 DE-EKLGKGKEMQDRLSALVGIFNTLDFRGSRAEGDDLLGDAYEYLMRHFATESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  +   ++          S    +T+YDPTCG+G  L              + 
Sbjct: 160 FYTPAEVSRILAKVV------GISASTKQDQTVYDPTCGSGSLL---------LKVAAEA 204

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
           P  +  +GQE +  T A+    M++   E         +I++G T++   FT     + F
Sbjct: 205 PRGITIYGQEKDNATWALSRMNMILHGNEV-------ADIRKGDTITSPQFTKNDQLRSF 257

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + ++NPPF  K             + + GRF  G P   +G   FL+H+   L+     
Sbjct: 258 DFAVANPPFSVKSWS-------NGLDKDYGRFEFGKPPEKNGDYAFLLHVLKSLKST--- 307

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+ A++L    LF G A   E+ IR  LL+   I  I+ LP +LF+ T I   + +L  
Sbjct: 308 -GKGAVILPHGVLFRGGA---EARIRTELLKRGYIRGIIGLPANLFYGTGIPACIVVLDK 363

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYR 471
                R G V +++A+  +     +G K R +      +++D++  +     +SRM+   
Sbjct: 364 ENAAGRTG-VFMVDASKGFI---KDGNKNR-LRSQDIHKVVDVFNKQTEVDRYSRMVPLT 418

Query: 472 T 472
            
Sbjct: 419 E 419


>gi|330994842|ref|ZP_08318764.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp.
           SXCC-1]
 gi|329758103|gb|EGG74625.1| Type I restriction enzyme EcoprrI M protein [Gluconacetobacter sp.
           SXCC-1]
          Length = 546

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 151/504 (29%), Positives = 226/504 (44%), Gaps = 86/504 (17%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           IW+ AE L G     ++G VIL FT+LRRLE  L   R        A        +   +
Sbjct: 11  IWRIAELLRGVVPPGEYGPVILAFTVLRRLE--LARGRPV-----SALAAVASVADPLAR 63

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
                                    LE+ +       + +    +      RL +AG+L 
Sbjct: 64  -------------------------LETLLGRLPAPVRGMMAQMEMGPLATRLARAGVLG 98

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++  +F+ ++L P     + M+ ++E L+R F  +  +      TP ++  L T L+  P
Sbjct: 99  RVAAHFAALDLSPALYGTQAMARLFEELVRHF--DAGQATGAHYTPPEIGDLMTDLVFAP 156

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
           D A      G    LYDP  GTG  L  A + +            +   GQE+     A+
Sbjct: 157 DAA------GTRHALYDPAAGTGVLLGRAADRL------AGRGVAVDLFGQEISARACAI 204

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           C A ML+R            +I  G+TL+ D    +RF   L+NPPFG  W   +  V+ 
Sbjct: 205 CQADMLLRGRNP-------AHILPGNTLAVDHHASRRFARMLANPPFGVDWRAIRPLVQA 257

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           EH  G  GRF  GLP+++DGSMLF++HL  ++  P  GG R  +V   + L  G A SGE
Sbjct: 258 EHATGSAGRFAAGLPRVADGSMLFMLHLLARMRAPARGGARVGMVTHGAALAGGGADSGE 317

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS- 433
           S IRR L+++DLI+ ++ALP D+F  T IATY+WIL NRK   R+G V+L++AT LW   
Sbjct: 318 SAIRRHLVDHDLIDTVIALPGDMFVNTGIATYVWILDNRKPAGRQGMVRLVDATGLWRRC 377

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGK------------------------------ 463
            R+ G+KRR +       ++   ++  +                                
Sbjct: 378 PRSSGEKRREMTQAHIATVVQAALAGTDMDLIVQPGADGAPARWQAVACDGPEGQDGTGC 437

Query: 464 --FSRMLDYRTFGYRRIKVLRPLR 485
              SR++  R F YR + V R +R
Sbjct: 438 VPLSRIVPGRDFLYRSVSVERRVR 461



 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 597 ESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAE 656
           +    +F R + P  P A +D              G  I+F R+F +  P R L  I AE
Sbjct: 477 DDPDSWFARMILPFDPTAKLDMARCA--------TGCAISFARYFSRPAPPRPLAAIRAE 528

Query: 657 LKGVEAQIATLL 668
           L+   A++A L+
Sbjct: 529 LRRSMARLAALM 540


>gi|160939420|ref|ZP_02086770.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437630|gb|EDP15392.1| hypothetical protein CLOBOL_04313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 522

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/492 (22%), Positives = 194/492 (39%), Gaps = 73/492 (14%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48
           M     +    L N +W  A  L G+ +  +F   IL       L               
Sbjct: 1   MDNSIQAHQKELCNKLWAMANALRGNMEAYEFKNYILGMIFYYYLSDRTEKYMTNLLKDD 60

Query: 49  ----------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                     E  ++AV E+ L   G  I+ +   +       N S + +  L      +
Sbjct: 61  NISYEDAWTDEEYKTAVVEEALRDLGFIIEPQFLFRKMVKMVENRS-FDIEFL-QKAINS 118

Query: 99  NLESYIASFS-DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
            +ES + + S ++   +F D    ST  +L     +++ ++ KI  +   I    +    
Sbjct: 119 LMESTLGNDSQEDFDGLFSDMQLDST--KLGHTVKDRSAVMAKIIASLDEINFSVEDTKI 176

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ N YE+LI +F +   + A +F TP     L   L               ++   DP
Sbjct: 177 DVLGNAYEYLIGQFAATAGKKAGEFYTPSGPAELLCRLACLGLTD--------VKDAADP 228

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L    ++                +GQEL   T+ +    M++R +        
Sbjct: 229 TCGSGSLLLRLKSYANVRN----------YYGQELTSTTYNLARMNMILRGI-----PYR 273

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           + NI  G TL  D F   +F   ++NPP+  KW  D   +E    N         L   S
Sbjct: 274 NFNIYNGDTLEHDYFGDMKFRVQVANPPYSAKWSGDLSFMEDPRFNEY-----GKLAPKS 328

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIV 391
                F+ H+ + ++      GRA ++L    LF G A   E  IR+ L++  ++++A++
Sbjct: 329 KADFAFVQHMVHHMDED----GRAVVLLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVI 381

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T I   + +L  R+  +    +  I+A+  + +    GK + I+ +    +
Sbjct: 382 GLPANLFFGTGIPVCVLVL-KRERNDNADNILFIDASGDFEA----GKNQNILRECDIDK 436

Query: 452 ILDIYVSRENGK 463
           I++ Y  RE+  
Sbjct: 437 IVETYERREDVD 448


>gi|21229943|ref|NP_635860.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766819|ref|YP_241581.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21111454|gb|AAM39784.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572151|gb|AAY47561.1| type I site-specific deoxyribonuclease [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 538

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/516 (20%), Positives = 197/516 (38%), Gaps = 81/516 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTKDDQK--ELGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGSDY 58

Query: 60  LAFGGSNI---------------DLESFVKVA--GYSFYNTSEYSLSTLGSTNTRNN--L 100
                                  D+ +F +       +    +Y    + +   + N  L
Sbjct: 59  PDAKTIGNSDKTPLSVWYASNPGDVAAFEQQMRRKAHYVIKPKYLWGNIVNLAKKQNHDL 118

Query: 101 ESYI---------ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELH 146
              +          SF    + +F + + +S   +L     ++   L  I    +     
Sbjct: 119 LDTLQQGFKHIEEDSFESEFQGLFSEINLAS--DKLGRKYDDRNAKLCSIISEIARGMAL 176

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   + + YE+LI +F +   + A +F TP+++ ++ +A++            G +
Sbjct: 177 SAKTDS--LGDAYEYLIGQFAAGSGKKAGEFYTPQEISNILSAIVTLDSQEPKTGPRGKL 234

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            +++D  CG+G  L +  N + + G           +GQE    T+ +    ML+  ++ 
Sbjct: 235 DSVFDFACGSGSLLLNIRNRMTNSGGSIGK-----IYGQEYNVTTYNLARMNMLLHGVK- 288

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
               D    I  G TL  D    +        RF   ++NPPF  +WE  +   +     
Sbjct: 289 ----DTEFEIYHGDTLKNDWDWLRETNPAKKPRFDAVVANPPFSYRWEPGEAMAQ----- 339

Query: 319 GELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
               RF   G+   S     FL+H    L+      G  AI+L    LF G     E++I
Sbjct: 340 --DARFKNHGVAPKSAADFAFLLHGLQYLKDD----GVMAIILPHGVLFRGGK---EADI 390

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           RR LL++  I+ ++ LP +LF+ T I   + +L   K       V  INA   +      
Sbjct: 391 RRKLLDDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAGHFAK---- 443

Query: 438 GKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472
           GK++  + D+  ++I++ Y +R +  ++SR +  + 
Sbjct: 444 GKRQNQLTDEHIQRIVNTYQNRNKQDRYSRCVSMKE 479


>gi|153000715|ref|YP_001366396.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS185]
 gi|151365333|gb|ABS08333.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS185]
          Length = 847

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/513 (20%), Positives = 194/513 (37%), Gaps = 103/513 (20%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKNELYSSLWASCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF       +    +     + L   I S ++  + K + +  DF
Sbjct: 45  YKGDPYGMIVVPKGASF-----DDMIAAKNDKEIGDKLNKIIGSLAEENDLKGVIDVADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-DKLGKGKEMVDRLTKLVGIFQGLDLTGNRADGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++        + +     T+YDPTCG+G  L  A N         +
Sbjct: 159 QFYTPSEVSQILAKVV------GIQNNTPQDATVYDPTCGSGSLLLKASN---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
            P  L   GQE++  T A+    M++         + +  I +G+TL+   +       K
Sbjct: 204 APRGLSIFGQEMDNATSALARMNMILHN-------NATAKIWKGNTLADPQWKDGANKLK 256

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K             N   GRF  G P   +G   FL+H+   L+   
Sbjct: 257 TFDFAVANPPFSNKN----WTSGLNPLNDPYGRFTWGTPPEKNGDYTFLLHIITSLKST- 311

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A++L    LF G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++
Sbjct: 312 ---GKGAVILPHGVLFRGNA---EANIRQNLIKQGYIKGIIGLPANLFYGTGIPACIIVI 365

Query: 411 SN---RKTEERRGK---------------------------VQLINATDLWTSIRNEGKK 440
                +K     G+                           + +I+A+  +     +G K
Sbjct: 366 DKEHAQKAAVHFGEALQGERPLIEGHGNDVKNNQTHITGRSIFMIDASKGFI---KDGNK 422

Query: 441 RRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
            R +      +I+D++      + FSR++    
Sbjct: 423 NR-LRSQDIHKIVDVFNKGLELERFSRLVTIDE 454


>gi|224282780|ref|ZP_03646102.1| putative type I restriction-modification system methyltransferase
           subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313139939|ref|ZP_07802132.1| type I restriction-modification system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132449|gb|EFR50066.1| type I restriction-modification system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 524

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 110/557 (19%), Positives = 201/557 (36%), Gaps = 71/557 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-- 59
            ++   A  L+  +W  A DL G+   T F   IL     R L    +     + ++   
Sbjct: 5   AKYQAQAGELSQKLWAIANDLRGNMDSTKFRNYILGTIFYRYLSERTKDYMQEILKEDGL 64

Query: 60  ---LAFGGSNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFS 108
               AF   +           +  Y     +L                R N+E Y  + +
Sbjct: 65  TYEQAFADDDYRPVVEQWSIEHLGYIIRPENLFGELVRKIVRPDGDADRFNVEDYERAVN 124

Query: 109 D------------NAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVP 151
           +                +F D         L         L+ K+    S I+       
Sbjct: 125 ELIGSTMGQASEAAFSGLFNDMKLQD--PDLGDTVAARTSLIAKVIVKISEIDFKLADSQ 182

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+   Y  LI  F S+  + + +F TP     L   L     D          RT+ D
Sbjct: 183 FDVLGTAYMILIGLFASDAGKKSGEFFTPTGPSKLVATLATVGLDEA--------RTVGD 234

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            TCG+   L +   H+           +   +GQE    T+ +    ML+  ++      
Sbjct: 235 CTCGSASMLLEVQKHLT-------TGRVGHFYGQENNATTYNLARMNMLMHGVD-----Y 282

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              +I +G TL +D +   +    + NPP+  K++ +   ++    +G        LP  
Sbjct: 283 QHFDIYKGDTLREDKYGDVKMTVQVCNPPYSLKYDGNPALLDDPRYSG-----AGKLPPK 337

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           S     F+ H+   ++      GR A++L    LF G A   E  IR++++++ + ++A+
Sbjct: 338 SHADYAFIEHMVYHMDDND---GRVAVLLPHGVLFRGGA---EEVIRKYIVKDLNRLDAV 391

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + L  +LF  T+I   L +L   K     G V  I+A+  +      GK +  + D   +
Sbjct: 392 IGLAPNLFHGTSIPVCLLVL-KSKRNGNSGNVLFIDASKEF----KPGKNQNTLEDAHIQ 446

Query: 451 QILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y +R +  KF+ + D          +  P R     ++     L A     K   
Sbjct: 447 KIVEAYKNRADVDKFAHVADMAEIEANGWNLNIP-RYVDTFEEEEPVDLAAVRDDLKRIE 505

Query: 510 LHQSFWLDILKPMMQQI 526
             +   +D ++ M+ Q+
Sbjct: 506 SEKKAAIDKVESMLHQL 522


>gi|324992013|gb|EGC23935.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK405]
          Length = 533

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/571 (21%), Positives = 210/571 (36%), Gaps = 73/571 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   L             +
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMIFYKYLSDKLLFFVVETMEEETES 61

Query: 52  RSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
                  Y ++       E  +       ++    + + + L          LE     F
Sbjct: 62  LDEALALYRSYYEDPDSQEDLISVIKDELNYVIKPDLTFTALVDRVNEGIFQLEDLAQGF 121

Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                  +  + +FED D  S   +L     ++  L+  + K  + +E+        ++ 
Sbjct: 122 RDIEQCDELYENLFEDIDLYSK--KLGATPQKQNQLVAAVMKELAVLEV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A             P  +   GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKFSHQ-------PQTVQYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGFYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y SRE   KFS +  Y         +  P  +    ++      E        +   
Sbjct: 440 LEAYKSREEIDKFSHLASYEEIVENDYNLNIPRYVDTFEEEEVEPLTEIVSKINDTNKAI 499

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           +S  + +L+ + Q        +  +K+ +K 
Sbjct: 500 ESQTVSLLEMLNQLHGTTPETDVELKQFLKE 530


>gi|239994805|ref|ZP_04715329.1| type I site-specific deoxyribonuclease [Alteromonas macleodii ATCC
           27126]
          Length = 530

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/482 (21%), Positives = 184/482 (38%), Gaps = 74/482 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE------------------CALEPTR 52
           L   +W  A  + G+    +F   IL F   + L                    A++ T 
Sbjct: 9   LEKQLWNIANSMRGNMSADEFRDYILGFIFYKYLSERMDIYADELLKADDIKFDAIDETT 68

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------- 105
              +E   A     ID   +       F+  ++              L   +        
Sbjct: 69  DEGQEYLSAIQEEAIDHLGYFLKPSELFHVLAQ---KGEAGEFILQPLTEVLNHIEQSTM 125

Query: 106 --SFSDNAKAIFEDFDFS-STIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             +  D+   +F+D D + + + + EKA   L+ KI  +   I+         V+ + YE
Sbjct: 126 GTAAEDDFNGLFDDIDLTSNKLGKTEKAKNELVSKILAHLDAIDFLHHETDIDVLGDAYE 185

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  F S   + A +F TP  V  L   L+              ++++YDPTCG+G  L
Sbjct: 186 YLIGMFASGAGKKAGEFYTPPMVSKLLAKLVTMGK--------TKLKSVYDPTCGSGSLL 237

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                 V + G            GQE  P T+ +    M++  +          +IQQ  
Sbjct: 238 LRVAKEVKEVGK---------YCGQESNPSTYNLARMNMILHGVH-----YRQFDIQQDD 283

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL       +RF   ++NPPF   W   +  +  E            L   S     F+ 
Sbjct: 284 TLETPHHIEERFEAVVANPPFSANWSASQGFLSDERFQDY-----GKLAPKSKADFAFVQ 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFF 399
           H+ ++L    +  G  A+VL    LF G A   E  IR+ L++N + ++ ++ LP ++F+
Sbjct: 339 HMVHQL----DENGTMAVVLPHGVLFRGAA---EGHIRKHLIKNKNYLDVVIGLPANIFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L  +K  + +  +  I+A+  +    N    +  I ++   +IL+    R
Sbjct: 392 GTSIPTCILVL--KKHRQHKDNILFIDASQNFGKATN----QNYIREEDLARILEAVDER 445

Query: 460 EN 461
           E 
Sbjct: 446 EQ 447


>gi|312865348|ref|ZP_07725576.1| type I restriction-modification system, M subunit [Streptococcus
           downei F0415]
 gi|311099459|gb|EFQ57675.1| type I restriction-modification system, M subunit [Streptococcus
           downei F0415]
          Length = 533

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 123/576 (21%), Positives = 214/576 (37%), Gaps = 75/576 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M+E   ++ SL   +W +A+ L       D+   +L     + L   +            
Sbjct: 1   MSEI-QTSQSLYQALWNSADILRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAKTMEQET 59

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIA 105
                  E Y ++          ++V     S+    + + + L          LE    
Sbjct: 60  QDLDQALELYRSYYADEETHADLIEVTKDEMSYAIEPDLTFTALVQEINAGTFQLEHLAQ 119

Query: 106 SFSDNAKA------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F +  +       +FED D  S   +L     ++   +  + K  + +++        +
Sbjct: 120 GFRNIEQDDELFENLFEDIDLYSK--KLGATPQKQNQTIANVMKELAVLDV--AGHAGDM 175

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F ++  + A +F TP+ V  L T + L   +           +LYDPT 
Sbjct: 176 LGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIALMGRED------KQGFSLYDPTM 229

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +A  +          P  +   GQEL   T  +    M++  +  +     ++
Sbjct: 230 GSGSLLLNAKKYSH-------KPNTVAYFGQELNTSTFNLARMNMILHGVPIE-----NQ 277

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
            +    TL +D        F   L NPP+  KW  D   ++         RF P   L  
Sbjct: 278 KLHNADTLDEDWPTQEPTNFDAVLMNPPYSAKWSADAGFLQ-------DPRFSPFGKLAP 330

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H    L+     GG  AIVL    LF G A   E  IR+ LLE   I+ +
Sbjct: 331 KSKADFAFLLHGYFHLKQD---GGVMAIVLPHGVLFRGNA---EGAIRKHLLEEGAIDTV 384

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++FF T+I T + IL   + E     V  I+A+  +T     GK + I+ D    
Sbjct: 385 IGLPANIFFNTSIPTTVIILKKDRQER---DVYFIDASKEFTK----GKNQNIMEDSHLE 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +IL+ Y  R++   F+ +  +         +  P R     ++  +A L   +   K + 
Sbjct: 438 KILETYRKRKDSDKFAHLASFEEIEENDFNLNIP-RYVDTFEEEEVAPLTEIVANIKTTN 496

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
                    L  M+ Q+           E    +  
Sbjct: 497 QAIEEKTSELMAMLGQLKGTNPESQKELEDFLKDLK 532


>gi|301156219|emb|CBW15690.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 556

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/577 (16%), Positives = 197/577 (34%), Gaps = 95/577 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++           
Sbjct: 21  LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSDPENPLY 80

Query: 57  ---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                    E+Y     + ++   +   A   F+   +     + + +   N+ + +   
Sbjct: 81  LDRTFYDTDEEYQEALAAELENRDYY-TADNVFWVPQQARWDEIKAVSIL-NIGAELPWG 138

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             FS  AK I + FD       +L+               L  +   FS       T   
Sbjct: 139 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 198

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 199 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 247

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 248 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 304

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 305 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 351

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 352 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 405

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K    +G+V  I+A  +           R  
Sbjct: 406 DLVECMVALPGQLFTNTQIPACIWFLNRNKAR--KGEVLFIDARQIGYMKDRV---LRDF 460

Query: 445 NDDQRRQILDIYVSRENGK-------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             D   +I D   + +          F +         +   VL P R     ++     
Sbjct: 461 TADDIAKIADTLHAWQQSDGYEDQAAFCKSASLEEIASKEY-VLTPGRYVGTAEQED-DG 518

Query: 498 LEADITWRKLSPLHQSFW---LDILKPMMQQIYPYGW 531
           +      + L+ L +  +    ++   + + +   G+
Sbjct: 519 VPFAEKMQNLTDLLKEQFAKSAELEAEIKKNLGGLGY 555


>gi|183981973|ref|YP_001850264.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium marinum M]
 gi|183175299|gb|ACC40409.1| type I restriction/modification system DNA methylase HsdM
           [Mycobacterium marinum M]
          Length = 484

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/459 (19%), Positives = 160/459 (34%), Gaps = 71/459 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   L + +WK AE L G    + +  VIL    L+ +  A +  +             
Sbjct: 4   STMKELKDTLWKGAEKLRGSIPASQYKDVILGLVFLKFVSDARDGRK------------- 50

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                         F    E     L       ++   I +   +      +   ++T+ 
Sbjct: 51  -------------PFVVPPEARWEALAGNAKSPDIGQLIDTAMLSVMT--ANPSLAATLP 95

Query: 126 RL---EKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +L        L ++ +    +     P      +M  +YE+ +  F         +F TP
Sbjct: 96  QLYHKVDQRRLGELVEVLGAARFSGRPSHRARDLMGEVYEYFLGNFARAEGRRGGEFFTP 155

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             VV +   +L                 +YDP CG+GG        +         P  +
Sbjct: 156 PSVVRVIVEIL-----------EPSSGRIYDPCCGSGGMFVQTERFICAHDGD---PAQI 201

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE   +T  +    + +  ++           + G T + D   G    Y ++NPP
Sbjct: 202 SIYGQESVEQTWRMAKMNLAVHGIDDAGLGA-----RWGDTFATDQHDGVPMDYVMANPP 256

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F          ++   ++ +  R+  G P  ++ +  ++ H+ +KL      G   A   
Sbjct: 257 FN---------IKDWARDEQDPRWRFGTPPAANANFAWIQHILSKLAPTGQAGVVMA--- 304

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + S        +GE  IR  +++ DL+  +VALPT LF  T I   LW  +  K     G
Sbjct: 305 NGSM---SSKTNGEDRIRAGIIDADLVSCMVALPTQLFRSTGIPVCLWFFAKDKKAR-SG 360

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +V  I+A  L + +       R + DD   +I D Y   
Sbjct: 361 QVLFIDARGLGSMVDRCE---RTLTDDDVARIGDTYHGW 396


>gi|300173281|ref|YP_003772447.1| type I restriction-modification system subunit M [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887660|emb|CBL91628.1| type I restriction-modification system, M subunit [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 531

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 115/572 (20%), Positives = 213/572 (37%), Gaps = 72/572 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63
           A SL   +W  A+ L G    +++   +L     + L       R    ++         
Sbjct: 2   ATSLEQQLWAAADILRGKMDASEYKNYLLGLVFYKYLSD--AELREVYEQENGQTKDFPD 59

Query: 64  --------------GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                          +    E      GY    T  +      +     NL    A F++
Sbjct: 60  RSVQFQTLTEWFKDDAEELTEIIQLQKGYFIQPTQLFYTYRQQADRYEFNLTDLQAGFNE 119

Query: 110 ------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                   K +F D D +ST       ++   + ++ +    I+L        V+ + YE
Sbjct: 120 LERQGDQFKGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLF--EHDGDVIGDAYE 177

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F +   + A +F TP+ V  + + +     +            +YDPT G+G  +
Sbjct: 178 YLIGQFAAGAGKKAGEFYTPQAVSRIISEITSIGQEDRT------PFHIYDPTMGSGSLM 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   ++++       P  +  HGQEL   T+ +    +++  ++ +       N+  G 
Sbjct: 232 LNIRRYLSN-------PKQIHYHGQELNTTTYNLARMNLILHGVDQERM-----NLNNGD 279

Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL  D  T + + +   + NPP+  KW      +  +       RFG  L   S     F
Sbjct: 280 TLDSDWPTEEPYQFDAVVMNPPYSAKWSAADKFLSDQR----FERFG-KLAPKSKADFAF 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F
Sbjct: 335 LLHGFYHLKDT----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIF 387

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I T + IL   +       V  I+A+  +   +N    + I+      +I+  Y  
Sbjct: 388 YGTSIPTTVIILKKHRATR---DVLFIDASSDFDKQKN----QNILLPAHIEKIVKAYKQ 440

Query: 459 REN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE+  K+S +  +         +  P  +    ++  +  ++      K+         D
Sbjct: 441 REDADKYSHVASFEEIKENDFNLNIPRYVDTFEEEEPVNLVKVSNEIAKIENELSKNQSD 500

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           +L  MM QI     +E  ++ + K       +
Sbjct: 501 LL-DMMNQITVTKESEEIIEATKKILAGGQHE 531


>gi|327470618|gb|EGF16074.1| site-specific DNA-methyltransferase [Streptococcus sanguinis SK330]
          Length = 407

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 169/424 (39%), Gaps = 44/424 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 12  MAKKSNANIGFEKELWDAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLIAE-- 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+         + S    + + + +       +   ++   
Sbjct: 70  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIEE--DNPSL 124

Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + ++         +L ++   F+ I+++       ++   YE+ I +F +   +   
Sbjct: 125 ENVLPQIYASPDLDKRVLGEVVDIFTNIQMYEGENEKDLLGRAYEYCIEQFAAYEGKRGG 184

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V     +L                 +YDP CG+GG    +   + +   +  
Sbjct: 185 EFYTPTSIVKTIVEIL-----------KPYRGRVYDPACGSGGMFVQSAKFIENHSGNIN 233

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   GQE   +T  +    M+IR +++D     +      ++   DL    + +Y 
Sbjct: 234 ---NLSVFGQESNADTWKMAKMNMVIRGIDADFGEHQA------NSFFNDLHPTLKANYI 284

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF               K  +  R+  G P  S+ +  ++ H+ + ++      G+
Sbjct: 285 MANPPFNISNWGAD-------KLQDDIRWKYGTPPNSNANYAWIQHMIHHMDPS---NGK 334

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             +VL++  L      SGE +IR+ ++E+DLIE I+ALP +LF+   I   LW +S  K 
Sbjct: 335 VGLVLANGSL--SSTQSGEGDIRKKIIEDDLIEGIIALPANLFYSVTIPACLWFISKNKN 392

Query: 416 EERR 419
           ++ R
Sbjct: 393 KKER 396


>gi|76787763|ref|YP_330354.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae A909]
 gi|77406552|ref|ZP_00783602.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae H36B]
 gi|77411600|ref|ZP_00787941.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae CJB111]
 gi|76562820|gb|ABA45404.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae A909]
 gi|77162317|gb|EAO73287.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae CJB111]
 gi|77174830|gb|EAO77649.1| type I restriction-modification system, M subunit [Streptococcus
           agalactiae H36B]
          Length = 526

 Score =  294 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 116/499 (23%), Positives = 193/499 (38%), Gaps = 73/499 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---- 59
                 SL   +W +A+ L G     D+   +L     + L   L        E++    
Sbjct: 1   MAEKITSLRQALWNSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEEHFNTF 60

Query: 60  --------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIASF- 107
                    A+   ++  +    V G   Y      +   L     +    LES    F 
Sbjct: 61  TDTQKIFEDAYQDEDLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQGFR 120

Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 ++ + +F+D D  S   +L     ++   +  + K  + I+   ++V    + +
Sbjct: 121 DIEQSGEDFENLFKDIDLYSK--KLGSTPQKQNQTIANVMKTLNEIDF--ESVDGDTLGD 176

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP   +G
Sbjct: 177 AYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFSGRED------QKGMTLYDPAMESG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +A  +             +  +GQE+   T+ +    M++  +        ++++ 
Sbjct: 231 TLLLNAKKYSHQ-------SDTVSYYGQEINTSTYNLARMNMMLHGV-----AIENQHLS 278

Query: 278 QGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333
              TL  D  T +   F   L NPP+  KW      +          RF   G L   S 
Sbjct: 279 NADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGFLT-------DPRFSSYGVLAPKSK 331

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+ I+ L
Sbjct: 332 ADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGAA---EGKIRQKLLEQGAIDTIIGL 384

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+++F+ T+I T + IL   +T +    V  I+A+  +      GK +  + D   ++IL
Sbjct: 385 PSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASKEFDK----GKNQNTMTDAHIKKIL 437

Query: 454 DIYVSRENGKFSRMLDYRT 472
           D Y SR+N      L    
Sbjct: 438 DAYKSRDNSDKFSYLASFD 456


>gi|217425685|ref|ZP_03457176.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 576]
 gi|217391361|gb|EEC31392.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 576]
          Length = 870

 Score =  294 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 128/672 (19%), Positives = 233/672 (34%), Gaps = 116/672 (17%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W++ + L G    + +   +L    ++ +                   
Sbjct: 71  MAIKKSDLYSSLWESCDLLRGGMDASQYKDYVLVLLFIKYVSD----------------K 114

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122
            +           G SF       +  L    +  + +   I      A  + +  DF+ 
Sbjct: 115 YAGQRYAPITIPEGASF-----ADMVALKGKPDIGDQINKKIVGPLAAANKLSDMPDFND 169

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
           +  +L         L  +   F   +L         D ++ + YE+L+R F +E  +   
Sbjct: 170 S-GKLGTGAEMVRRLTDLIAVFENPDLDFSKNRADGDDILGDAYEYLMRHFATESGKSKG 228

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++      +         T+YDPTCG+G  L    +          
Sbjct: 229 QFYTPAEVSRIMAQII-----GISSTRTSSETTVYDPTCGSGSLLLKVGDA--------- 274

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
            P  +  +GQE +  T  +    M++         + +  I QG+TL+   F      K 
Sbjct: 275 APTSVTLYGQEKDSATSGLARMNMILH-------DNPTALIGQGNTLTDPKFRDGDRLKT 327

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPP 350
           F + ++NPPF  K    + +   +  N   GRF   G+P    G   +L+H+   L+   
Sbjct: 328 FDFVVANPPFSDK----RWSTGLDPFNDPYGRFDTFGVPPAKQGDYAYLLHIVRSLKST- 382

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A +L    LF G A   E+EIRR L+    I+ I+ LP +LF+ T I   + ++
Sbjct: 383 ---GKGACILPHGVLFRGNA---EAEIRRNLIRYGYIKGIIGLPANLFYGTGIPACIIVV 436

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                + R+G + +I+A+  +     +G K R + +    +I+D++  ++          
Sbjct: 437 DKEDAQARKG-IFMIDASQGFI---KDGPKNR-LREQDIHRIVDVFNRQDESDPRYA--- 488

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                R + V    +  F L+             + L         D    +      + 
Sbjct: 489 -----RMVSVAEIEKNDFNLNLPRYIDSSVAEDIQDLKGHLHGGIPDA--DVDALDDYWA 541

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIV----------AFINAFGRKDPR--ADPVTDVN 578
              S  K   K        +   K+ I           AFI   G    +  A  V  + 
Sbjct: 542 ICPSLKKTLFKPRTPGYYDLAVDKAAIKSTILQHPQFAAFIEEMGAHFEQWRARTVQTLK 601

Query: 579 G-EW----------IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAY----IDKIFIDE 623
             E           + D  L  YE  P    I  Y   +V  H+ D +     D  ++  
Sbjct: 602 ALEPGFHPKQLIVELADGLLNHYEGKPL---IDAY---DVYQHLMDYWEETMQDDAYLLA 655

Query: 624 KDKEIGRVGYEI 635
            D  + +  Y I
Sbjct: 656 SDGWVAKT-YRI 666


>gi|156976837|ref|YP_001447743.1| type I restriction-modification system specificity subunit [Vibrio
           harveyi ATCC BAA-1116]
 gi|156528431|gb|ABU73516.1| hypothetical protein VIBHAR_05613 [Vibrio harveyi ATCC BAA-1116]
          Length = 873

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 182/460 (39%), Gaps = 58/460 (12%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
                    +++ + I     L+R+     +  ++ V E   A    +           +
Sbjct: 4   NIFR--LDQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQF 61

Query: 79  SFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN-----AKAIFEDFDFSSTIARLEKAG 131
            FY   +     L    TN  + L   + +  +       + + +  +F+  + +     
Sbjct: 62  DFYVPEKARWENLKHLKTNAGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIPD 121

Query: 132 -LLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             L +  ++F  I L  +      ++   YE+LI+ F     +   +F TP +VV L   
Sbjct: 122 ERLVEFIQHFDSIPLSNEDFELPDLLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLVE 181

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L           P     +YDPTCG+GG L  + N+V + G + K    +   GQE   
Sbjct: 182 IL----------EPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKK---IHLLGQEDNG 228

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKK 304
            T ++C   M++             +I+ G TL+  L        + F   ++NPPF + 
Sbjct: 229 GTWSICKMNMILHG-------SGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQN 281

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           ++K    +++        RF   +P+    G ++F+ H+   L+      G+AA+V+   
Sbjct: 282 YKKADMQLKE--------RFNTFMPESGKKGDLMFVQHMVASLK----ANGKAAVVMPHG 329

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF G     E   R+  +E  ++EA++ LP  LF+ T I   + +++     E R  V 
Sbjct: 330 VLFRGAE---ERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVINKG-GRENRDSVL 385

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            INA   +     EGK +  +  +   +I  +Y +     
Sbjct: 386 FINADREY----REGKNQNSLRPEDIEKITSVYKAMLEDD 421


>gi|283458000|ref|YP_003362607.1| type I restriction-modification system methyltransferase subunit
           [Rothia mucilaginosa DY-18]
 gi|283134022|dbj|BAI64787.1| type I restriction-modification system methyltransferase subunit
           [Rothia mucilaginosa DY-18]
          Length = 569

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 119/555 (21%), Positives = 215/555 (38%), Gaps = 80/555 (14%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                 A L + IW+ A DL G     DF + +L     R L      +++   ++    
Sbjct: 45  NRNAERAQLHSTIWRIANDLRGSVDGWDFKQYVLGMLFYRYLS----ESQARFIDENYTL 100

Query: 63  GGSNIDLESFVKVAGYS--------FYNTSEYSLSTLGST-----NTRNNLESYIASF-- 107
            G  ++L+      G          F+       S + +      N    L +   +F  
Sbjct: 101 KGPFVELKDEDCNEGGRQVVLRERGFFLLPSQLFSNVYAKARQDQNLNETLANVFKAFEE 160

Query: 108 -------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP--DTVPDR 153
                   +N K +F+DF   S   +L      +   L K+    +G+ L    +   + 
Sbjct: 161 SARGTESEENVKGLFDDFVLDS--NKLGVSPAARHENLLKLMDAVAGMNLGKGYEDSEND 218

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + +   +   ++ TP++V  L   + +D  DA        IR++YDP 
Sbjct: 219 AFGDAYEYLMGMYAANAGKSGGEYYTPQEVSELLAKIAMDGRDAD------KIRSVYDPA 272

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L        + G + K        GQE+   T+ +C   M++  +  D      
Sbjct: 273 CGSGSLLL---KFKRELGKNSKGL---RFIGQEINLTTYNLCRMNMMLHGVPVDEFS--- 323

Query: 274 KNIQQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             I  G TL        +       F   +SNPP+  KW+ D D            R+ P
Sbjct: 324 --IAHGDTLIDPKHRNGKNPKFVEPFGAIVSNPPYSTKWKGDDDPT-----LKHDDRYAP 376

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F MH+   L       G AAIV     L+   A   E  IR +LL  
Sbjct: 377 AGVLAPKSKADLAFTMHMLKSLHEA----GTAAIVEFPGVLYRSGA---ERTIREYLLIE 429

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++A++ LP++LF+ T+IAT + +L   + ++    V  ++A+ L+      GK + I+
Sbjct: 430 NRVDAVIQLPSNLFYGTSIATCILVLKKGRRKDHS--VLFVDASALFDK----GKNQNIL 483

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
               R +ILD+  +RE  + FS ++  +    +   +     +     +  +  +E +  
Sbjct: 484 GKSHREKILDVLATREEREHFSALVPVQKLLEQEANLAVSSWVEPEDTRERVDIVELNSR 543

Query: 504 WRKLSPLHQSFWLDI 518
              +        ++I
Sbjct: 544 IENIVARQAQLRVEI 558


>gi|257078398|ref|ZP_05572759.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis JH1]
 gi|294780143|ref|ZP_06745515.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis PC1.1]
 gi|256986428|gb|EEU73730.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis JH1]
 gi|294452686|gb|EFG21116.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis PC1.1]
          Length = 529

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  +K                S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLKDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|331650405|ref|ZP_08351477.1| HsdM site-specific DNA-methyltransferase, type I modification
           [Escherichia coli M605]
 gi|331040799|gb|EGI12957.1| HsdM site-specific DNA-methyltransferase, type I modification
           [Escherichia coli M605]
          Length = 568

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 100/607 (16%), Positives = 201/607 (33%), Gaps = 115/607 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M          L +  WK A+ L  +    ++  V+L    L+ +  A +  +  ++   
Sbjct: 1   MDNAEQQFLNDLDSKFWKAADKLRANMDAANYKHVVLGLIFLKYVSDAFDARQKELKGLF 60

Query: 57  --------------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG---- 92
                               E Y       ++++ +       F+        TL     
Sbjct: 61  EDKSNPDNIYALSRDDYDTEEAYQQAIAEELEVQDYY-TEKNVFWVPKLARWETLKTNAA 119

Query: 93  --------STNTRNNLE------------SYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
                     ++  ++               I + +   K I                 L
Sbjct: 120 LPVGTVLGKDDSGKDIVMTSVSKLIDIALDTIENSNPKLKNILNRIGHYQLG-----NDL 174

Query: 133 LYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           L  +   FS              +     ++ ++YE+ + +F     +    + TP+ +V
Sbjct: 175 LISLINVFSDTSFSEPKYNGVKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIV 234

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPI 239
            L   +L                 +YDP  G+GGF   +   +            +    
Sbjct: 235 TLIVEML-----------QPYNGRVYDPAMGSGGFFVSSDRFIEAHADEKHYNAAEQKRN 283

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +  +GQE  P T  +    M+IR ++ +  +  +       T   D     R  + ++NP
Sbjct: 284 ISVYGQESNPTTWRLAAMNMVIRGIDFNFGKQNA------DTFLNDQHPDLRADFVMANP 337

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  K            K  +  R+  G P   + +  ++ H+ + L      G  A ++
Sbjct: 338 PFNMKEW-------WNAKLEDDVRWQYGTPPQGNANFAWMQHMIHHLAPK---GSMALLL 387

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT---- 415
            + S   N    + E EIRR ++E DL+E +VALP  LF  T I   +W+L+  K+    
Sbjct: 388 ANGSMSSN---TNSEGEIRRAIIEADLVECMVALPGQLFTNTQIPACIWLLTKDKSGSNG 444

Query: 416 -EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRT 472
              R+G+V  I+A  + +   R      R  + D  ++I D + S + +  +        
Sbjct: 445 KAHRKGEVLFIDARQIGFMKERVL----RDFSTDDIKKIADTFHSWQMDKDY-----KDE 495

Query: 473 FGYR-RIKVLRPLRMSFILDKTGLA-RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
            G+     +    +  F+L        +E D      +         + + +++      
Sbjct: 496 AGFCFAATLDDIKKNDFVLTPGRYVGAVEKDEDDEPFAEKMVWLTTCLKEQLIESAKLEK 555

Query: 531 WAESFVK 537
             ++ +K
Sbjct: 556 QIKADLK 562


>gi|254428124|ref|ZP_05041831.1| N-6 DNA Methylase family [Alcanivorax sp. DG881]
 gi|196194293|gb|EDX89252.1| N-6 DNA Methylase family [Alcanivorax sp. DG881]
          Length = 571

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 102/610 (16%), Positives = 193/610 (31%), Gaps = 116/610 (19%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M          L + +WK A  L       ++  ++L    L+ +  A    +  + E +
Sbjct: 1   MNNTEQQFLKELDDKLWKAACKLQASMDAANYKHIVLGLIFLKYVSDAFAERQDELLELF 60

Query: 60  LAFGGSNI---DLESFVKVAGY------------------SFYNTSEYSLSTLGSTNT-- 96
                 NI     E F   A Y                   F+        TL       
Sbjct: 61  QTDDDDNIYYLPREDFDSDAEYQQAIEDELEVLDYYREANVFWMPKAARWQTLKEKAVLP 120

Query: 97  ----------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
                                  +N    I   +   K I              +   L 
Sbjct: 121 TGTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSNAKLKGILNRIGQYQQ-----ENETLI 175

Query: 135 KICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            +   FS              +     ++ ++YE+ +  F     +    + TP+ +V L
Sbjct: 176 GLINTFSDTSFTKPVFSGEKLNLHSKDILGHVYEYFLGEFALAEGKQGGQYYTPKSIVTL 235

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILV 241
              +L                 +YDP  G+GGF   +   + +  S       +    + 
Sbjct: 236 IVEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIENHASEQHYDAAEQKKHIS 284

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE  P T  +    M IR ++ +         +  +T + D     R  + ++NPPF
Sbjct: 285 VYGQEANPTTWKLAAMNMAIRGIDFNFGT------KNANTFTNDQHPDLRADFVMANPPF 338

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K               +  R+  G P   + +  ++ H+ + L      G  A ++ +
Sbjct: 339 NMK-------DWWSESLADDARWQYGTPPKGNANFGWMQHMLHHLAPT---GSMALLLAN 388

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------ 415
            S        + E EIR+ L+E D +E +VALP  LF  T I   +W L+  KT      
Sbjct: 389 GSM---SSKTNNEGEIRKRLIEEDRVECMVALPGQLFTNTQIPACIWFLTKDKTNGMVRN 445

Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
               +RRG+   I+A +L +   R      R   ++   +I D + + +  +    +   
Sbjct: 446 EKKRDRRGEFLFIDARNLGFMKDRVL----RDFTNEDIAKIADTFHAWQQDEGYEDVA-- 499

Query: 472 TFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             G+ +   +    +  ++L        +                  + + + +Q     
Sbjct: 500 --GFCKSSTLDEIKKYDYVLTPGRYVGAQEQ---EDDGEPFAEKMARLTEQLKEQFAESD 554

Query: 531 WAESFVKESI 540
             E+ VK+ +
Sbjct: 555 RLEAEVKQHL 564


>gi|325695188|gb|EGD37089.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK150]
          Length = 535

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 194/498 (38%), Gaps = 74/498 (14%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA------------ 47
           MT+ T  ++  L   +W +A+ L       D+   +L     + L               
Sbjct: 1   MTQETIQTSQRLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKLLFFVAETMGEE 60

Query: 48  ---LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
              LE      R  Y         ++   +   Y+      ++   L   +    LE   
Sbjct: 61  TEDLEQALDIYRRYYEDEETKADLIDVIKQDLSYAMKPDLTFTNLVLQVNSGTFQLEHLA 120

Query: 105 ASF-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
             F     SD     +FED D  S   +L     ++   +  + K  + +++        
Sbjct: 121 QGFRNIEQSDELFENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGD 176

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYDPT
Sbjct: 177 MLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QKGFTLYDPT 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +  + G        +   GQEL   T+ +    M++  +  + +    
Sbjct: 231 MGSGSLLLNAKRYSHEAG-------TVSYFGQELNTATYNLARMNMILHGVPIENQF--- 280

Query: 274 KNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLP 329
             +    TL +D        F   L NPP+  KW      ++         RF     L 
Sbjct: 281 --LHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSAADGFLQ-------DPRFSSFGALA 331

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H    L+     GG  AIVL    LF G A   E +IR+ LLE   I+ 
Sbjct: 332 PKSKADFAFLLHGFYHLK---QAGGVMAIVLPHGVLFRGNA---EGKIRKALLEEGAIDT 385

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D   
Sbjct: 386 VIGLPANIFFNTSIPTTVIILKKDRTNR---DVFFIDASKEFDK----GKNQNIMTDIHI 438

Query: 450 RQILDIYVSREN-GKFSR 466
            +IL++Y +RE+  KFS 
Sbjct: 439 DKILEVYKAREDVNKFSH 456


>gi|256960372|ref|ZP_05564543.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis Merz96]
 gi|293384345|ref|ZP_06630230.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis R712]
 gi|293388418|ref|ZP_06632926.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis S613]
 gi|312908546|ref|ZP_07767490.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 512]
 gi|312908984|ref|ZP_07767846.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 516]
 gi|256950868|gb|EEU67500.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis Merz96]
 gi|291078337|gb|EFE15701.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis R712]
 gi|291082193|gb|EFE19156.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis S613]
 gi|310625513|gb|EFQ08796.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 512]
 gi|311290684|gb|EFQ69240.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis DAPTO 516]
 gi|315149120|gb|EFT93136.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0012]
          Length = 529

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  ++                S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|145638854|ref|ZP_01794462.1| transcription elongation factor NusA [Haemophilus influenzae
           PittII]
 gi|145271826|gb|EDK11735.1| transcription elongation factor NusA [Haemophilus influenzae
           PittII]
          Length = 576

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 96/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------------A 47
              L   +W +A+ L       ++  ++L    L+ +                       
Sbjct: 41  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQKKIQAELTDPENPLY 100

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
            + T     E+Y     + ++   +   A   F+  +      L   +   N  + +   
Sbjct: 101 FDRTFDDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 158

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             FS  AK I + FD       +L+               L  +   FS       T   
Sbjct: 159 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 218

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 219 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 267

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 268 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 324

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 325 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 371

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 372 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 425

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 426 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 480

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I D   + +    S   + +    +   +       F+L         E +  
Sbjct: 481 TADDIAKIADTLHAWQT---SDGYEDQAAFCKSTTLEEIAGNDFVLTPGRYVGTAEQEDD 537

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 538 GVPFAEKMQNLTALLKEQFAKSTELEAEIKKNL 570


>gi|2689699|gb|AAB91416.1| modification subunit [Lactococcus lactis subsp. lactis bv.
           diacetylactis]
          Length = 531

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 185/487 (37%), Gaps = 78/487 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52
           L   +W +A+ L G    +++   +L     + L         E                
Sbjct: 5   LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64

Query: 53  SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +   E Y       I+     + +       FY+        + + N   NL    A F+
Sbjct: 65  AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118

Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  +       +F D D +ST       ++   + ++ +    I+L        V+ + Y
Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F     + A +F TP+ V  + + +     ++           +YDP  G+G  
Sbjct: 177 EYLIGMFAEGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++ +          +  HGQEL   T  +    +++  ++ +       N+  G
Sbjct: 231 MLNIRRYLLNPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL  D  + + + +   + NPP+  KW      +          RFG  L   S     
Sbjct: 279 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++
Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y 
Sbjct: 387 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439

Query: 458 SRENGKF 464
            RE+ + 
Sbjct: 440 KREDIER 446


>gi|117923445|ref|YP_864062.1| type I restriction-modification system, M subunit [Magnetococcus
           sp. MC-1]
 gi|117607201|gb|ABK42656.1| type I restriction-modification system, M subunit [Magnetococcus
           sp. MC-1]
          Length = 537

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 112/576 (19%), Positives = 199/576 (34%), Gaps = 88/576 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+     + L   +W  A+DL G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTKEE--LSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 58

Query: 60  LAFGGS--------------NIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--- 101
                                   +   ++     Y     Y  S++       + E   
Sbjct: 59  PKLQEDDRRTPLAVWYAANTEDIPDLEKQMRRKMHYVIHPDYLWSSIYERARTQDAELLQ 118

Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
                  YI   SF+   + +F + +  S   +L     ++   L  I    +       
Sbjct: 119 TLQRGFKYIENESFASAFQGLFSELNLHS--EKLGRTPVDRNKKLCAIITKVAEGIAQFS 176

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++ + YE+LI +F +   + A +F TP+ +  + + ++              +  
Sbjct: 177 -TDSDILGDAYEYLIGQFAAGSGKKAGEFYTPQSLSTILSRIVTLDSQEPATGKKRKLSC 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +    +   G           +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRKQMGTHGIGM-------IYGQEKNITTYNLARMNMLLHGVK--- 285

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G +L  D             +    ++NPPF  +WE ++         GE
Sbjct: 286 --DSGFQIHHGDSLINDWDMLSEMNPAKKVKCDAIVANPPFSYRWEPNEA-------LGE 336

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L       G  AI+L    LF G     ES IR 
Sbjct: 337 DFRFKSHGLAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGV---ESRIRT 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ ++ LP +LFF T I   + +L   K       V  INA++ +      GK
Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINASEYFEK----GK 442

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           ++  +  +    I++ Y  R+  +            RR+++    +  + L+ +      
Sbjct: 443 RQNQLLPEHIDNIVETYQYRKEEERYA---------RRVEMAEIEKNDYNLNISRYVSTA 493

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
                  L  ++        K +       G+ E  
Sbjct: 494 MSEQQIDLGAVNHKLVALEEKIVAATQKHNGFLEEL 529


>gi|270293232|ref|ZP_06199443.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
 gi|270279211|gb|EFA25057.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
          Length = 533

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 122/572 (21%), Positives = 209/572 (36%), Gaps = 74/572 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----------EPT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGSES 61

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
             A    Y  +       E  + V     ++    + + + L +        LE     F
Sbjct: 62  LEAALVVYRNYYEDADTHEDLLAVMKDELNYSIKPDLTFTALVARVNEGTFQLEDLAQGF 121

Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                SD     +FED D  S   +L     ++   +  + K  + +++        ++ 
Sbjct: 122 RDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QQGFTIYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDVHIEKI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y SRE   KF+ +  Y         +  P R     ++  +  L   ++    +   
Sbjct: 440 LEAYKSREEIDKFAHLASYEDIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINETNKA 498

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
                  L  M+ Q++          +     
Sbjct: 499 IESQTASLLDMLNQLHGTTPEADAELKQFLEK 530


>gi|22416339|emb|CAC87150.1| restriction-modification enzyme type I M subunit [Streptococcus
           thermophilus]
          Length = 531

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 104/547 (19%), Positives = 205/547 (37%), Gaps = 71/547 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63
           A SL   +W +A+ L G    +++   +L     + L    +  R    ++         
Sbjct: 2   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSD--KQLREVYEQENGKTDTFPE 59

Query: 64  -----------GSNIDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD 109
                            +    +     Y      L     + + N   NL    A F++
Sbjct: 60  RSTLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNE 119

Query: 110 NAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             +       +F D D +ST       ++   + ++ +    I+L        V+ + YE
Sbjct: 120 LERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAYE 177

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  F +   + A +F TP+ V  + + +     ++       +   +YDP  G+G  +
Sbjct: 178 YLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------VPFHIYDPAMGSGSLM 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   ++         P  +  HGQEL   T  +    +++  ++ +       N+  G 
Sbjct: 232 LNIRRYLI-------HPNQVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNGD 279

Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL  D  + + + +   + NPP+  KW      +          RFG  L   S     F
Sbjct: 280 TLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFAF 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F
Sbjct: 335 LLHGFYHLKES----GTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIF 387

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  
Sbjct: 388 FGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKK 440

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE+ + ++ +  +         +  P  +    ++  +  +E +    K++         
Sbjct: 441 REDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTNLLKINEELVQQEQT 500

Query: 518 ILKPMMQ 524
           +L  +  
Sbjct: 501 LLSLIDD 507


>gi|77163968|ref|YP_342493.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|76882282|gb|ABA56963.1| Type I restriction-modification system M subunit [Nitrosococcus
           oceani ATCC 19707]
          Length = 534

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 114/503 (22%), Positives = 183/503 (36%), Gaps = 75/503 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT      + L   +W  A+DL G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTRD--QLSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 58

Query: 60  LAFGGSN-------------IDLESFVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYI- 104
                 +              D+ +F K       Y      L +  +   R   E  + 
Sbjct: 59  PKLADDDRRAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQ 118

Query: 105 -----------ASFSDNAKAIFEDFDFSST--IARLEKAGL-LYKICKNFSGIELHPDTV 150
                       SF+   + +F + +  S      L      L  I    +       T 
Sbjct: 119 TLAGGFKHIENESFASTFQGLFSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTG 178

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D  + + YE+LI +F +   + A +F TP+ V  + + ++              +  + 
Sbjct: 179 SDI-LGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVL 237

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  CG+G  L +  N +           I + +GQE    T+ +    ML+  ++     
Sbjct: 238 DFACGSGSLLLNVRNQM-------GPRGIGMIYGQEKNITTYNLARMNMLLHGMK----- 285

Query: 271 DLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           D    I  G TL  D             +    ++NPPF  +WE D+         GE  
Sbjct: 286 DTEFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDF 338

Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   GL   S     FL+H  + L       G  AIVL    LF G A   E+ IR  L
Sbjct: 339 RFESHGLAPKSAADFAFLLHGLHFLSDE----GTMAIVLPHGVLFRGGA---EARIRTKL 391

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP++LFF T I   + +L   K       V  INA++ +      GK++
Sbjct: 392 LKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKP---DDVLFINASEHFEK----GKRQ 444

Query: 442 RIINDDQRRQILDIYVSRENGKF 464
             +      +I+D Y  R+  + 
Sbjct: 445 NALRPVDIDKIVDTYQYRKEEER 467


>gi|254436009|ref|ZP_05049516.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
 gi|207089120|gb|EDZ66392.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani AFC27]
          Length = 541

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 114/503 (22%), Positives = 183/503 (36%), Gaps = 75/503 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT      + L   +W  A+DL G     DF   +L F  LR L    E   +  +   Y
Sbjct: 8   MTRD--QLSQLGKTLWAIADDLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGPDY 65

Query: 60  LAFGGSN-------------IDLESFVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYI- 104
                 +              D+ +F K       Y      L +  +   R   E  + 
Sbjct: 66  PKLADDDRRAPLAVWYEDNAEDVAAFEKQMRRKMHYVIHPDYLWSSIAELARTQDEELLQ 125

Query: 105 -----------ASFSDNAKAIFEDFDFSST--IARLEKAGL-LYKICKNFSGIELHPDTV 150
                       SF+   + +F + +  S      L      L  I    +       T 
Sbjct: 126 TLAGGFKHIENESFASTFQGLFSEINLRSEKLGRTLADQNRKLCTIITKIAKGIARFSTG 185

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D  + + YE+LI +F +   + A +F TP+ V  + + ++              +  + 
Sbjct: 186 SDI-LGDAYEYLIGQFAAGSGKKAGEFYTPQSVSTILSRIVTLDSQEPSTGKKKKLNRVL 244

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  CG+G  L +  N +           I + +GQE    T+ +    ML+  ++     
Sbjct: 245 DFACGSGSLLLNVRNQM-------GPRGIGMIYGQEKNITTYNLARMNMLLHGMK----- 292

Query: 271 DLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           D    I  G TL  D             +    ++NPPF  +WE D+         GE  
Sbjct: 293 DTEFQIHHGDTLENDWAILNERNPAKKLQCDAVVANPPFSYRWEPDEAM-------GEDF 345

Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   GL   S     FL+H  + L       G  AIVL    LF G A   E+ IR  L
Sbjct: 346 RFESHGLAPKSAADFAFLLHGLHFLSDE----GTMAIVLPHGVLFRGGA---EARIRTKL 398

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP++LFF T I   + +L   K       V  INA++ +      GK++
Sbjct: 399 LKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKP---DDVLFINASEHFEK----GKRQ 451

Query: 442 RIINDDQRRQILDIYVSRENGKF 464
             +      +I+D Y  R+  + 
Sbjct: 452 NALRPVDIDKIVDTYQYRKEEER 474


>gi|10956197|ref|NP_051026.1| type IC modification subunit [Streptococcus thermophilus]
 gi|6137148|gb|AAF04357.1| type IC modification subunit [Streptococcus thermophilus]
          Length = 531

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 104/542 (19%), Positives = 204/542 (37%), Gaps = 71/542 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG---- 63
           A SL   +W +A+ L G    +++   +L     + L    +  R    ++         
Sbjct: 2   ATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSD--KQLREVYEQENGKTDTFPE 59

Query: 64  -----------GSNIDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLESYIASFSD 109
                            +    +     Y      L     + + N   NL    A F++
Sbjct: 60  RSTLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTDLQAGFNE 119

Query: 110 NAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             +       +F D D +ST       ++   + ++ +    I+L        V+ + YE
Sbjct: 120 LERQGEEFSGLFSDIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAYE 177

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI  F +   + A +F TP+ V  + + +     ++       +   +YDP  G+G  +
Sbjct: 178 YLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------VPFHIYDPAMGSGSLM 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   ++         P  +  HGQEL   T  +    +++  ++ +       N+  G 
Sbjct: 232 LNIRRYLI-------HPNQVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNGD 279

Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL  D  + + + +   + NPP+  KW      +          RFG  L   S     F
Sbjct: 280 TLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFAF 334

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++F
Sbjct: 335 LLHGFYHLKES----GTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVIGLPANIF 387

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y  
Sbjct: 388 FGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYKK 440

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           RE+ + ++ +  +         +  P  +    ++  +  +E +    K++         
Sbjct: 441 REDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTNLLKINEELVQQEQT 500

Query: 518 IL 519
           +L
Sbjct: 501 LL 502


>gi|291529890|emb|CBK95475.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum 70/3]
          Length = 511

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 108/554 (19%), Positives = 217/554 (39%), Gaps = 70/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      +  R  + ++Y   G   +D  +F  
Sbjct: 5   LWKSADKLRGSVEPAEYKHVVLSLFFLKFAGDKFDAQREMIAKQY---GEKFVDTVAFY- 60

Query: 75  VAGYSFYNT--SEYS--LSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127
                FY    S +S  +      +    +++    I   +   K         +  +RL
Sbjct: 61  TKDNVFYLPPESRWSYIMENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 116

Query: 128 E-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +     L  +    + I    D   + ++  IYE+ + +F     +G  +F TP+ +V+L
Sbjct: 117 QLDTAKLASLLDEINRINT--DDKENDIIGRIYEYFLSKFALAEGKGKGEFYTPKCIVNL 174

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L   D             LYDP CG+GG    +M  V      H     +  +GQE
Sbjct: 175 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAH---HGNKKQVSIYGQE 220

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +C   + IR + ++     +      +T + D     +  Y ++NPPF +   
Sbjct: 221 YTNTTYKLCKMNLAIRGISANLGETAA------NTFTNDQHKDLKADYIMANPPFNQ--- 271

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
               A   E++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 272 ---KAWRAENELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 324

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
            +      E +IR+ L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K           
Sbjct: 325 SDDGT---ELKIRKQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEQNGQL 381

Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471
               +R  ++  ++   +         K   + D  R ++  +Y + +   +    +   
Sbjct: 382 KRYRDREREILFMDLRQMGGPYEK---KYIELTDKDRAKVTSVYHNWQQEGYEETYENIP 438

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y    V    +  F L  +                  ++   ++ + ++Q+      
Sbjct: 439 EFCYSASFVEVAEK-GFTLVPSRYIEFVNRDENIDFDAKMKTLQAELKELLVQEEQSKAD 497

Query: 532 AESFVKESIKSNEA 545
             +  KE     E 
Sbjct: 498 LLAVFKELGYEIEL 511


>gi|322392309|ref|ZP_08065770.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus peroris ATCC 700780]
 gi|321144844|gb|EFX40244.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus peroris ATCC 700780]
          Length = 533

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 127/572 (22%), Positives = 216/572 (37%), Gaps = 75/572 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGTDS 61

Query: 52  RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
                E Y  +       E  V V     ++    + + + L +        LE     F
Sbjct: 62  LEDALEVYRNYYEDAETHEDLVSVMNDELNYIIKPDLTFTALVARVNEGTFQLEDLAQGF 121

Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                SD+    +FED D  S   +L     ++   +  + K  + +++        ++ 
Sbjct: 122 RDIEQSDDLYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREN------QEGFTIYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMA-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y SRE   KF  +  Y         +  P R     ++  +  L   ++    +   
Sbjct: 440 LEAYKSREEIDKFVHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINETNKA 498

Query: 512 QSFWLDILKPMMQQI-YPYGWAESFVKESIKS 542
                  L  M+ Q+      A++ +KE +K+
Sbjct: 499 IESQTASLLEMLGQLHGTTPEADAELKEFLKN 530


>gi|269793144|ref|YP_003318048.1| type I restriction-modification system, M subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100779|gb|ACZ19766.1| type I restriction-modification system, M subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 522

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 119/559 (21%), Positives = 212/559 (37%), Gaps = 77/559 (13%)

Query: 1   MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---------ALE 49
           M         A L   IW  A DL G     DF + +L     R +             E
Sbjct: 1   MENNRKEQERAELHRTIWNMANDLRGSVDGWDFKQYVLGMLFYRYISENITAYINAGEWE 60

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIAS-F 107
              +      L+   +    E  VK  G  F+         + +    + NL   +   F
Sbjct: 61  AGNTEFDYAKLSDEEAEQAREDLVKTKG--FFILPSELFENVRARAKDDENLNETLEQIF 118

Query: 108 S------------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DT 149
           S            DN K +F+D D +S   +L     ++   L K+  +   ++L     
Sbjct: 119 SNIEASAQGTESEDNFKGLFDDIDVNS--NKLGNTVAKRNEKLVKLLNSVGEMKLGDYKD 176

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  + YE L+  + S   +   ++ TP++V  L T L +     + K        +
Sbjct: 177 NTIDAFGDAYEFLMGMYASNAGKSGGEYYTPQEVSELLTHLTIVGKTEVNK--------V 228

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP CG+G  L      +                GQE+   T+ +C   M +  ++ D  
Sbjct: 229 YDPACGSGSLLLKFAKILGKENVRQG------FFGQEINITTYNLCRINMFLHDIDYDKF 282

Query: 270 RDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
                +I  G TL+       + F   +SNPP+  KW+ D D +          RF P  
Sbjct: 283 -----DIALGDTLTDPQHWDDEPFEAIVSNPPYSIKWKGDSDPI-----LINDPRFSPAG 332

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ 
Sbjct: 333 VLAPKSKADLAFIMHSLSWLAT----NGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNY 385

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ I+ LP +LF+ T+IAT + +L   K++        I+A+  +  + N       +  
Sbjct: 386 IDCIIQLPDNLFYGTSIATCIMVLKKSKSDNST---LFIDASKEFVKVTN----NNKLTQ 438

Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  + IL+ Y+ R++ + F+R++       +   +     +     +  +  +  +    
Sbjct: 439 ENIKNILNTYIDRKDIEHFARLVPNSEIAEQDYNLSVATYVEQEDTREKIDIVALNAEIE 498

Query: 506 KLSPLHQSFWLDILKPMMQ 524
           K+    Q    +I K + +
Sbjct: 499 KIVARQQILREEIDKIIAE 517


>gi|257090571|ref|ZP_05584932.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|312905100|ref|ZP_07764221.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|256999383|gb|EEU85903.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|310631490|gb|EFQ14773.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|315579072|gb|EFU91263.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0630]
          Length = 530

 Score =  293 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 102/544 (18%), Positives = 210/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK- 112
                           +    +     Y+ S   L  + +   +  +           + 
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYSISPEYLFNVLADQAKQAIFQLNDLNKAFVQL 122

Query: 113 --------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
                    +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 SSTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|313892755|ref|ZP_07826336.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442686|gb|EFR61097.1| N-6 DNA Methylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 332

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/331 (29%), Positives = 153/331 (46%), Gaps = 31/331 (9%)

Query: 9   ASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            S+ +FIW  A+D L   +    +  VILP T++RRL+  LE T+  V E       + I
Sbjct: 7   NSIVSFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAMLEHTKPVVLEMKKKMDEAGI 66

Query: 68  --DLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +    AG +F N S + L  L         + + E+Y+  FS N + I   F F 
Sbjct: 67  TNQWPALCNAAGQAFCNASPFVLKDLTSRVKKQTLKADFEAYLDGFSPNVQEILAKFQFR 126

Query: 122 STIARLEKAGLLYKICKNF----------------SGIELHPDTVPDRVMSNIYEHLIRR 165
           + I  + +A +L  + + F                S   +    + +  M  ++E L+R+
Sbjct: 127 NQIDTMIEADILGAVIEKFVSPTINLSPKPIYTDDSKNVIKLPALDNHAMGTVFEELVRK 186

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F    +E A +  TPRDVV L   L+  P     K+      + YD  CGTGG LT A +
Sbjct: 187 FNEANNEEAGEHWTPRDVVDLMADLIFIPIADEIKD---ATYSCYDGACGTGGMLTVAQD 243

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +            +   GQE++PET+A+C A ML++        D +++I  GSTLS D
Sbjct: 244 RLTSLAKRRSKEVSIHLFGQEVQPETYAICKADMLLKG-----DGDQAEHIAYGSTLSAD 298

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
               ++F + L+NPP+GK W+ D +   ++ 
Sbjct: 299 GNASRQFDFMLANPPYGKSWKTDAEKWVEKR 329


>gi|312952954|ref|ZP_07771810.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0102]
 gi|310629095|gb|EFQ12378.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0102]
          Length = 531

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 211/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  S   L  + +   +     L     +F   
Sbjct: 63  QTILYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|219871811|ref|YP_002476186.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
 gi|219692015|gb|ACL33238.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
          Length = 537

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 212/577 (36%), Gaps = 88/577 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MT+       L   +W  A+ L G     DF   +L F  LR L    E        +  
Sbjct: 1   MTQ--EQLNQLGKTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGRDY 58

Query: 59  ---------------YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRN 98
                          Y        D E  ++   +          S   L+ + ST   +
Sbjct: 59  PQLSNDDKRTPLAVWYQENADFTADFEKQMRRKVHYVIKPEYLWGSIAELARVQSTELLS 118

Query: 99  NLE---SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
            L+    YI   SF      +F + + +S   +L     E+   L +I K  +   +   
Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNS--EKLGKSYTERNNKLAEIVKRIAE-GISEF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F S   + A +F TP+ V  + + ++              + +
Sbjct: 176 SADSDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKRKKLDS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +  + +A+ G H         +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRHQMAENGGHIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G +L  D              F   ++NPPF  +W+  +D          
Sbjct: 288 --DTEFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDPKEDLAN------- 338

Query: 321 LGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF G GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR+
Sbjct: 339 DFRFNGYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRK 391

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL +  I+A++ LP +LF+ T I   + +L   K E     +  INA D +      GK
Sbjct: 392 KLLNDGNIDAVIGLPANLFYSTGIPVCILVLKKCKKE---DDILFINAADAFEK----GK 444

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARL 498
           ++  + D+   +I++ Y  R+  +          GY +RI V       + L+       
Sbjct: 445 RQNRLTDEHIAKIIEHYQYRKETQ----------GYAKRISVQEIEDNDYNLNIARYVNN 494

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            A      L+  HQ+      K  +       + +  
Sbjct: 495 TAVEEEIDLAANHQALMDLDAKIKVATAKHNVFLKEL 531


>gi|315169213|gb|EFU13230.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1341]
 gi|315171542|gb|EFU15559.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1342]
          Length = 529

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  ++                S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLEDEDSRQDLIDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|69245865|ref|ZP_00603682.1| Type I restriction-modification system M subunit [Enterococcus
           faecium DO]
 gi|257879183|ref|ZP_05658836.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,230,933]
 gi|257881998|ref|ZP_05661651.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,502]
 gi|257890013|ref|ZP_05669666.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,410]
 gi|260560170|ref|ZP_05832347.1| type I restriction-modification system M subunit [Enterococcus
           faecium C68]
 gi|293560248|ref|ZP_06676747.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1162]
 gi|294620836|ref|ZP_06700040.1| type I restriction-modification system, M subunit [Enterococcus
           faecium U0317]
 gi|314947719|ref|ZP_07851126.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
 gi|68195567|gb|EAN10009.1| Type I restriction-modification system M subunit [Enterococcus
           faecium DO]
 gi|257813411|gb|EEV42169.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,230,933]
 gi|257817656|gb|EEV44984.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,502]
 gi|257826373|gb|EEV52999.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,410]
 gi|260073737|gb|EEW62062.1| type I restriction-modification system M subunit [Enterococcus
           faecium C68]
 gi|291599621|gb|EFF30634.1| type I restriction-modification system, M subunit [Enterococcus
           faecium U0317]
 gi|291605792|gb|EFF35227.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1162]
 gi|313645699|gb|EFS10279.1| type I restriction-modification system, M subunit [Enterococcus
           faecium TX0082]
          Length = 530

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 212/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  S   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ + ++         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLANFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|46019874|emb|CAE52400.1| putative restriction-modification enzyme type I M subunit
           [Streptococcus thermophilus]
          Length = 537

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 105/554 (18%), Positives = 206/554 (37%), Gaps = 71/554 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M      A SL   +W +A+ L G    +++   +L     + L    +  R    ++  
Sbjct: 1   MEGRIIMATSLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSD--KQLREVYEQENG 58

Query: 61  AFG---------------GSNIDLESFVKVAGYSFYNTSEYSL---STLGSTNTRNNLES 102
                                   +    +     Y      L     + + N   NL  
Sbjct: 59  KTDTFPERSTLYAGFMEWYEEDKDDLIENIQPRQGYFIQPDRLFYHYRIKADNYEFNLTD 118

Query: 103 YIASFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
             A F++  +       +F D D +ST       ++   + ++ +    I+L        
Sbjct: 119 LQAGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD-- 176

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+ + YE+LI  F +   + A +F TP+ V  + + +     ++       +   +YDP 
Sbjct: 177 VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------VPFHIYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++         P  +  HGQEL   T  +    +++  ++ +      
Sbjct: 231 MGSGSLMLNIRRYLI-------HPNQVHYHGQELNTTTFNLARMNLILHGVDKERM---- 279

Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + + + +   + NPP+  KW      +          RFG  L   
Sbjct: 280 -NLNNGDTLDADWPSEEPYQFDSVVMNPPYSVKWSAADKFLSDPR----FERFG-KLAPK 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 334 SKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGGA---EGTIRQALLEMGAIDAVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +
Sbjct: 387 GLPANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDK 439

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+  Y  RE+ + ++ +  +         +  P  +    ++  +  +E +    K++  
Sbjct: 440 IVSTYKKREDIERYAHVASFDEIQENDFNLNIPRYVDTFEEEEPVDLVEVNTILLKINEE 499

Query: 511 HQSFWLDILKPMMQ 524
                  +L  +  
Sbjct: 500 LVQQEQVLLSLIDD 513


>gi|56476900|ref|YP_158489.1| Type I site-specific deoxyribonuclease, methylase subunit
           [Aromatoleum aromaticum EbN1]
 gi|56312943|emb|CAI07588.1| Type I site-specific deoxyribonuclease,methylase subunit
           [Aromatoleum aromaticum EbN1]
          Length = 543

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 119/578 (20%), Positives = 211/578 (36%), Gaps = 91/578 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           MTE       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTE--QDQKQLGKTLWAIADQLRGSMNADDFRDYMLSFLFLRYLSDNYEQAAKKELGADY 58

Query: 60  LA-------------------FGGSNIDLESFVKVAGYSFYNTSEY-------SLSTLGS 93
                                   ++   E   ++     Y             L+   S
Sbjct: 59  PDVAPGVMEQTDSTTPLQIWYEENADDVAEFEKQMRRKVHYVIEPDYLWGSIVHLAKTES 118

Query: 94  TNTRNNLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143
           +   + L+    YI   SF  N + +F + + +S   +L     ++   L  I    +  
Sbjct: 119 SKLLDTLQKGFKYIEERSFQSNFQGLFSEINLAS--DKLGRKYEDRNDKLCSIISELAR- 175

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +   +     + + YE+LI +F +   + A +F TP+ +  + +A++        +   
Sbjct: 176 GMSLFSTDTDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKEGPR 235

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +  ++D  CG+G  L +  + +   G           +GQE    T+ +    ML+  
Sbjct: 236 KKLENVFDFACGSGSLLLNVRHRMKKAGGTIGK-----IYGQEYNVTTYNLARMNMLLHG 290

Query: 264 LESDPRRDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           ++     D    I  G TL+         +     +F   ++NPPF  +W+      E  
Sbjct: 291 VK-----DTEFEIYHGDTLANTWDSLRETNPAKKPQFDAVVANPPFSYRWDLGDAMSE-- 343

Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                  RF   G+   S     FL+H  + L+      G  AI+L    LF G A   E
Sbjct: 344 -----DMRFKNHGVAPKSAADFAFLLHGLHYLKDD----GVMAIILPHGVLFRGGA---E 391

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             IRR LL +  I+ +V LP +LF+ T I   + +L   K       V  INA + +   
Sbjct: 392 ERIRRKLLIDGHIDTVVGLPANLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK- 447

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
              GK++  ++D+  ++I+D Y  R        +       RR+ +    +  F L+ + 
Sbjct: 448 ---GKRQNQLSDEHIQRIIDTYQQR-----PSDIPRYA---RRVGMEEIEKNDFNLNISR 496

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
                       L  +HQ   +DI K +++    +   
Sbjct: 497 YVSTAVAEEEVDLKAVHQQ-LVDIEKQIVKAKDKHNAF 533


>gi|258593067|emb|CBE69378.1| N-6 DNA methylase [NC10 bacterium 'Dutch sediment']
          Length = 640

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 112/560 (20%), Positives = 209/560 (37%), Gaps = 81/560 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             S+   +WK A  + G+     F   ILP   ++RL    E   + + E Y   G    
Sbjct: 122 TKSMEGLLWKAACSIRGEKDAPKFKDYILPLVFIKRLSDVFEDEMAGLTETYE--GNEER 179

Query: 68  DLESFVKVAGY-SFYNTSEYSL------------STLGSTNTRNNLES---YIASFSDNA 111
                    G   FY   + +                        L +    IA  + + 
Sbjct: 180 ARTVLEADHGVVRFYIPPQATWPVVSSRQMFEWPEGKRPKTLGEQLTTTVRAIARLNPSL 239

Query: 112 KAIFEDFDFSST--IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFG 167
           + + +  D++      R    G L ++ +  S          V    +   YE+L+R+F 
Sbjct: 240 QGVIDIVDYNEIRNGEREISDGALSRLIELLSDPRYRMGLHDVEPDFLGRAYEYLLRKFA 299

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               + A +F TP++V  L   L+           P     + DP CG+GG L      +
Sbjct: 300 EGQGQSAGEFFTPKEVGWLIAYLM----------RPKQGEEVNDPCCGSGGLLIKCELVL 349

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G   +I   L  +GQEL   + A+    M++  +E +        I +G++++   F
Sbjct: 350 K--GQEEEIARPLRLYGQELTGSSFAIARMNMVLHDMEGE--------IVRGNSMANPKF 399

Query: 288 TG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMH 341
                 +RF   ++NP + +      +     ++N    RF    G    S     +L H
Sbjct: 400 LDGSSLRRFDIVVTNPMWNQD-----NFDPASYENDPFERFVERGGFAPASSADWAWLQH 454

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLF 398
           +   L       GRAA+V+ +     G    GE++   IRRW ++ D IE ++ LP +LF
Sbjct: 455 VHASLNDA----GRAAVVIDTGAASRGSGSQGENKEKTIRRWFVDRDAIEGVILLPDNLF 510

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T  A  + +L+ +K + R+G+V LINA+  +      G+ +  I D   ++I + + +
Sbjct: 511 YNTTAAGIIILLNRQKAKGRQGRVILINASTEFEK----GRPKNFIPDASVKKIAEAFHA 566

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            ++ +    +           +    +  + L  +              +P        +
Sbjct: 567 GKDVERFVKVAS---------IEEIAKNDYNLSPSRY--------IETTAPTEHRDIQTV 609

Query: 519 LKPMMQQIYPYGWAESFVKE 538
           L  + +        +S +KE
Sbjct: 610 LDDLSKLDAEVKQLDSELKE 629


>gi|313887163|ref|ZP_07820859.1| putative type I restriction-modification system, M subunit
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923392|gb|EFR34205.1| putative type I restriction-modification system, M subunit
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 525

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 99/563 (17%), Positives = 208/563 (36%), Gaps = 61/563 (10%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +  G    S+   +W++A  L G  + +++  V+L    L+         R+ +  K 
Sbjct: 5   MAKKQGKKEKSIEESLWESANKLRGSVEPSEYKHVVLSLIFLKYANDCFIERRAQLIAK- 63

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
              G      E+    A   FY T     S L     + ++   I +     + + E   
Sbjct: 64  ---GEERYVDEAAFYTATNVFYLTEHSRWSYLMEHAKQPDIAIKIDAALAEVERVNETLK 120

Query: 120 ---FSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               S+  + L      L  +    + I+   D     ++  +YE+ I +F     +G  
Sbjct: 121 GALPSNYYSSLGLDQTKLSALLDEINKIDTLKDR-EHDLIGRVYEYFISKFAIAEGKGKG 179

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           ++ TP+ +V+L   ++   +             +YDP CG+GG    +M  +      H 
Sbjct: 180 EYYTPKSIVNLIAEMIQPYEG-----------KIYDPCCGSGGMFVQSMKFIEAH---HG 225

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  +GQE    T+ +    + IR + S+     +       T   D     +  + 
Sbjct: 226 NKKNISVYGQEYTNTTYKLAKMNLAIRGIASNLGAVAA------DTFHNDQHKDLKADFI 279

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPPF       + +   +++  +  R+ G  +P  S+ +  +++++ +KL    +  G
Sbjct: 280 MANPPFN------QKSWRAKNELVDDPRWAGYEVPPTSNANYGWILNIVSKL----SVNG 329

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L++  L        E  IR+ L+EN L+EAIV LP ++F+ T+I+  LWIL+  K
Sbjct: 330 VAGFLLANGAL---SGEGTEQAIRKQLIENKLVEAIVILPRNMFYSTDISVTLWILNRNK 386

Query: 415 TE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
                          +R  KV  ++             K    + +Q  +I + + + + 
Sbjct: 387 KARTINQNGALVKYRDRERKVLFMDLRQSGEPFEK---KYIQFSPEQIAEIANNFHTWQQ 443

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
                  D   + Y    +       + L  +              +        ++++ 
Sbjct: 444 EGGKPYQDVPEYCYSA-TIEEIAETGYSLVPSKYIEFVDRDEGIDYNERLHELNAELMQL 502

Query: 522 MMQQIYPYGWAESFVKESIKSNE 544
           + ++        + + +  K   
Sbjct: 503 LEEEAASRKELITLMSKLTKGEA 525


>gi|229042277|ref|ZP_04190029.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH676]
 gi|228727068|gb|EEL78273.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH676]
          Length = 530

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 200/496 (40%), Gaps = 72/496 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY---- 59
            A L + ++  A++L      +++   +L     + L   L            E+Y    
Sbjct: 1   MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTPE 60

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111
                   A    +I  +    +     Y+    Y  + L +   +N  +  +   +   
Sbjct: 61  KQTQLYREALADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQ--LNDLNKAF 118

Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158
             +   +D F+     ++ K+  L            ++ K  + I++        V+ + 
Sbjct: 119 IGLSTKYDQFNGLFDDMDLKSKKLGSDDQQRNITVTEVLKKLNDIDVI--GHNGDVIGDA 176

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G 
Sbjct: 177 YEFLIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            + +  N++         P  +  HGQEL   T+ +    +++  ++ +        ++ 
Sbjct: 231 LMLNIRNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMS-----LRN 278

Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           G TL+KD  T + + +   L NPP+  KW  D   ++         R+G  L   S    
Sbjct: 279 GDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADF 333

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +
Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I T + IL   +T      V  I+A++ +T     GK +  ++ +   +I++ Y
Sbjct: 387 LFFGTSIPTTVIILKKNRTTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETY 439

Query: 457 VSRENGKFSRMLDYRT 472
             RE+ +    +    
Sbjct: 440 KKREDVEKYAYVATFD 455


>gi|322388270|ref|ZP_08061874.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|321140942|gb|EFX36443.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
          Length = 533

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 122/556 (21%), Positives = 208/556 (37%), Gaps = 74/556 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PT 51
           E T ++ SL   +W +A+ L       D+   +L     + L   +             +
Sbjct: 2   ETTQTSQSLYQALWNSADVLRSKMDANDYKSYLLGMVFYKYLSDKMLFFVAETMEEGTDS 61

Query: 52  RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
                E Y  +       E  V V     ++    + + + L +        LE     F
Sbjct: 62  LEDALEVYRNYYEDADTHEDLVSVMNDELNYIIKPDLTFTALVARVNEGTFQLEDLAQGF 121

Query: 108 -----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                SD+    +FED D  S   +L     ++   +  + K  + +++        ++ 
Sbjct: 122 RDIEQSDDLYENLFEDIDLYSK--KLGATPQKQNQTVAAVMKELAVLDV--AGHAGDMLG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F ++  + A +F TP+ V  L T +     +           T+YD T G+
Sbjct: 178 DAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGRED------QEGFTIYDATMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +V  GQEL   T+ +    M++  +  + +      +
Sbjct: 232 GSLLLNAKKYSH-------KPQTVVYFGQELNTSTYNLARMNMILHGVPVENQF-----L 279

Query: 277 QQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
               TL +D        F   L NPP+  KW      +          RF P   L   S
Sbjct: 280 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFLN-------DPRFSPFGKLAPQS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++ 
Sbjct: 333 KADFAFLLHGYYHLKQD---NGVMAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I+ D    +I
Sbjct: 387 LPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIMTDAHIEKI 439

Query: 453 LDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           L+ Y S E   KF+ +  Y         +  P R     ++  +  L   ++    +   
Sbjct: 440 LEAYKSHEEMDKFAHLASYEEIVENDYNLNIP-RYVDTFEEEEVEPLTDIVSKINQTNQA 498

Query: 512 QSFWLDILKPMMQQIY 527
                  L  M+ Q++
Sbjct: 499 IESQTASLLEMLGQLH 514


>gi|57505320|ref|ZP_00371249.1| type I restriction-modification system, M subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016456|gb|EAL53241.1| type I restriction-modification system, M subunit [Campylobacter
           upsaliensis RM3195]
          Length = 533

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 119/509 (23%), Positives = 203/509 (39%), Gaps = 80/509 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREK--- 58
                +L + IWK A  L G+    DF   +L     R +   L      +  +      
Sbjct: 9   QAQRDALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISSTGGR 68

Query: 59  --------YLAFGGSNIDL-----ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL 100
                   Y      +ID+     E+ +   G+  Y  S+   + L +     TN    L
Sbjct: 69  GGGGEPNSYENLSDKDIDVNEKSREAIIDAKGFLIY-PSQLFCNVLKAHAQDTTNLNQTL 127

Query: 101 ESYIASFSDNA---------KAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHP 147
            +  A    +          K +F D D +S+       L++   LY++ +  + ++LH 
Sbjct: 128 SNVFAQIEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEKLYQVMQEIATLDLHY 187

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +        + YE+L+R +  +  +   +F TP++V HL   L+     ++ K       
Sbjct: 188 NDNAIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSHLLARLVSYGKQSVNK------- 240

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      +                GQE+ P ++ +C   ML+  +   
Sbjct: 241 -VYDPACGSGSLLLQFAKVLGIDNIKQG------FFGQEINPTSYNLCRINMLLHDI--- 290

Query: 268 PRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                + +I  G TL +      + F   +SNPP+  KW  D      + K     RF P
Sbjct: 291 --GFENFDIALGDTLLEPKHADDEPFDAIVSNPPYSTKWIGD-----DDLKLINDPRFAP 343

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F MH+ + L       G  AIV     L+ G     E +IR++L++ 
Sbjct: 344 AGVLAPKSYADLAFTMHMLSWLSPS----GTCAIVEFPGVLYRGGK---EKQIRKYLIDQ 396

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ I+ LP +LFF TNIAT + +L   K          I+A++ +T I     K+ I+
Sbjct: 397 NFIDTIIQLPENLFFGTNIATSIIVLKKNKQSVAT---LFIDASEQFTKIT----KKNIL 449

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRT 472
                  I++ Y  RE+ + FSR++    
Sbjct: 450 ESTHINTIVEAYAKREDIEHFSRLVSLEE 478


>gi|145629353|ref|ZP_01785152.1| transcription elongation factor NusA [Haemophilus influenzae
           22.1-21]
 gi|144978856|gb|EDJ88579.1| transcription elongation factor NusA [Haemophilus influenzae
           22.1-21]
          Length = 586

 Score =  293 bits (749), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 96/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------------A 47
              L   +W +A+ L       ++  ++L    L+ +                       
Sbjct: 51  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQKKIQAELTDPENPLY 110

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
            + T     E+Y     + ++   +   A   F+  +      L   +   N  + +   
Sbjct: 111 FDRTFDDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 168

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             FS  AK I + FD       +L+               L  +   FS       T   
Sbjct: 169 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 228

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 229 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 277

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 278 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 334

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 335 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 381

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 382 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 435

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 436 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 490

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I D   + +    S   + +    +   +       F+L         E +  
Sbjct: 491 TADDIAKIADTLHAWQT---SDGYEDQAAFCKSTTLEEIAGNDFVLTPGRYVGTAEQEDD 547

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 548 GVPFAEKMQNLTALLKEQFAKSTELEAEIKKNL 580


>gi|253699076|ref|YP_003020265.1| type I restriction-modification system, M subunit [Geobacter sp.
           M21]
 gi|251773926|gb|ACT16507.1| type I restriction-modification system, M subunit [Geobacter sp.
           M21]
          Length = 827

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 180/470 (38%), Gaps = 61/470 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + ++L G    + +   +L    ++ +                 + 
Sbjct: 1   MAVKKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISD--------------KYA 46

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
            ++    + V   G SF +       +         + + +   ++    ++ F DFD  
Sbjct: 47  DADCFAPAVVIPPGASFKDMIVLKGKSDIGEKINTQVIAPLVKSNERRLGRSDFPDFDDP 106

Query: 122 STIAR-LEKAGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGAEDF 177
           + +     K   L  +   F    L         D ++ + YE+L+R F +E  +    F
Sbjct: 107 NRLGEGQAKVERLTNLISIFENPALDFSKNRAEHDDILGDAYEYLMRHFATESGKSKGQF 166

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   ++      +         + YDPTCG+G  L              +  
Sbjct: 167 YTPSEVSRVVAKVIGISRANIV-----ASTSAYDPTCGSGSLLLKVAE---------EAG 212

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FH 293
             +   GQE +  T  +    M++           + NI  G+TL+   F   +    + 
Sbjct: 213 KHITLEGQEKDVTTAGLARMNMILH-------HFPTANILSGNTLAAPKFKDGKQLRTYD 265

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF  K             N +  RF  G+P    G   +L+H+   ++      
Sbjct: 266 YVVANPPFSDKTWSTGLLPA----NDDFERFAWGVPPTKQGDYAYLLHIIRSMKST---- 317

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA +L    LF G A   E+ IR+ L+ +  ++ I+ LP +LF+ T I   + +L   
Sbjct: 318 GKAACILPHGVLFRGNA---EATIRKQLVRSGYLKGIIGLPANLFYGTGIPACILVLDKE 374

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
               R+G V +I+A+  +     +G K R + D    +I+D +  +++  
Sbjct: 375 NAAGRKG-VFMIDASKGFI---KDGNKNR-LRDQDIHKIVDTFARQDDSD 419


>gi|2865243|gb|AAC15897.1| type IC modification subunit [Lactococcus lactis]
          Length = 531

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 106/485 (21%), Positives = 184/485 (37%), Gaps = 74/485 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52
           L   +W +A+ L G    +++   +L     + L         E                
Sbjct: 5   LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           +   E Y       I  E+     GY       +    + + N   NL    A F++  +
Sbjct: 65  AGFMEWYEEDKDDLI--ENIQPKQGYFIQPDQLFYSYRIKADNYEFNLTDLQAGFNELER 122

Query: 113 ------AIFEDFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVPDRVMSNIYEH 161
                  +F D D +ST  +L    LL       + +    I+L        V+ + YE+
Sbjct: 123 QGEEFSGLFADIDLNST--KLGSNALLRNVTITEVLRALDEIDLFEHNGD--VIGDAYEY 178

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  F S   + A +F TP+ V  + + +     +            +YDP  G+G  + 
Sbjct: 179 LIGEFASSAGKKAGEFYTPQAVSKIMSEITSIGQE------TRAPFHIYDPAMGSGSLML 232

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   ++         P  +  HGQEL   T  +    +++  ++ +       N+  G T
Sbjct: 233 NIRRYL-------NNPDQVHYHGQELNTTTFNLARMNLILHGIDKERM-----NLNNGDT 280

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L  D  + + + +     NPP+  KW      +          RFG  L   S     FL
Sbjct: 281 LDADWPSEEPYQFDSVCMNPPYSAKWSAADQFLSDPR----FERFG-KLAPKSKADFAFL 335

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++FF
Sbjct: 336 LHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANIFF 388

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+ I+  R
Sbjct: 389 GTSIPTTVIILKRNRSRR---DVLFIDASQDFEKRKN----QNVLLDEHIDKIVSIHKKR 441

Query: 460 ENGKF 464
           E+ + 
Sbjct: 442 EDIER 446


>gi|329116119|ref|ZP_08244836.1| type I restriction-modification system, M subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326906524|gb|EGE53438.1| type I restriction-modification system, M subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 531

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52
           L   +W +A+ L G    +++   +L     + L         E                
Sbjct: 5   LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64

Query: 53  SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +   E Y       I+     + +       FY+        + + N   NL    A F+
Sbjct: 65  AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118

Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  +       +F D D +ST       ++   + ++ +    I+L        V+ + Y
Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  
Sbjct: 177 EYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++ +          +  HGQEL   T  +    +++  ++ +       N+  G
Sbjct: 231 MLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL  D  + + + +   + NPP+  KW      +          RFG  L   S     
Sbjct: 279 DTLDADWPSEEPYQFDSVIMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++
Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y 
Sbjct: 387 FFGTSIPTTIIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439

Query: 458 SRENGKF 464
            RE+ + 
Sbjct: 440 KREDIER 446


>gi|315148961|gb|EFT92977.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4244]
          Length = 529

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  ++                S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|315172562|gb|EFU16579.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX1346]
          Length = 537

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52
           L   +W +A+ L G    +++   +L     + L         E                
Sbjct: 11  LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 70

Query: 53  SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +   E Y       I+     + +       FY+        + + N   NL    A F+
Sbjct: 71  AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 124

Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  +       +F D D +ST       ++   + ++ +    I+L        V+ + Y
Sbjct: 125 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 182

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F S   + A +F TP+ V  + + +     +            +YDP  G+G  
Sbjct: 183 EYLIGEFASSAGKKAGEFYTPQAVSKIMSEITSIGQE------TRAPFHIYDPAMGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++ +       P  +  HGQEL   T  +    +++  ++ +       N+  G
Sbjct: 237 MLNIRRYLTN-------PDQVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 284

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL  D  + + + +   + NPP+  KW      +          RFG  L   S     
Sbjct: 285 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 339

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++
Sbjct: 340 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 392

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y 
Sbjct: 393 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 445

Query: 458 SRENGKF 464
            RE+ + 
Sbjct: 446 KREDIER 452


>gi|73748045|ref|YP_307284.1| putative type I restriction-modification system methylation subunit
           [Dehalococcoides sp. CBDB1]
 gi|73659761|emb|CAI82368.1| putative type I restriction-modification system methylation subunit
           [Dehalococcoides sp. CBDB1]
          Length = 645

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/537 (20%), Positives = 201/537 (37%), Gaps = 68/537 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + A L  F+ K A  L G+  H++F   +      +R+            E+        
Sbjct: 14  TQAELDAFLEKAANILRGNVDHSEFRGYVFALLFFKRISDV-------YIEEVRKLTAQL 66

Query: 67  IDLESFVKVAGYSFYNT--SEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFED-F 118
            D         ++F     S + ++   S N         + +   +       I     
Sbjct: 67  GDETLAKDPKMHNFVVPDGSLWDIAARQSRNQVGTTLNEAMIAIERANQPKFDGILTSGV 126

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF+    +L +   L  +  +FS        V D V+ N YE+LIR F S   + + +F 
Sbjct: 127 DFNDA-EKLPR-DKLINLINHFSSQIFDRAHVTDDVLGNAYEYLIRNFASRAGKSSGEFY 184

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP++V +L + ++           P   +++ D   G+GG L    N+V         P 
Sbjct: 185 TPKEVAYLMSEIV----------EPQPGQSICDWASGSGGLLLQCRNYVTRQCKD---PD 231

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFH 293
            L+ + QE    T+ +    M++  ++S          +   +L   L         +F 
Sbjct: 232 RLLLYAQESNLSTYNISRINMILHGVKSWEH-------RHQDSLRNPLHVDDGKKLLKFD 284

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             + NPPF  +     D           GRFG G+P  ++G   +L H+   L+      
Sbjct: 285 RIVMNPPFSLEDWGYDDFQGG----DPFGRFGYGMPPRNNGDYAWLEHVLKSLKDT---- 336

Query: 354 GRAAIVLSSSPLFNGRAGSGESE------------IRRWLLENDLIEAIVALPTDLFFRT 401
           G+A +V+S   LF G+    E +            IR   ++ D IE ++ LP+ LF+  
Sbjct: 337 GKAIVVMSQGVLFRGQPEQTEEDDGRNQSADAEYVIREGFIKADAIECVIVLPSKLFYGN 396

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            +   L I++  K  ER+ K+ +I A+  + +       + I+      +IL  + +  +
Sbjct: 397 TVPGCLIIMNKNKPPERKNKILMIWASRNFQN----ANPQNILRPSDLMRILVPWRAFGD 452

Query: 462 GKFSRMLDY--RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
              +R L         +  ++ R  R+  I D         +    +LS L  S W 
Sbjct: 453 LDLARRLVSIHEEKLVQEEELERQRRLKDIEDAYAPILEPLETLTLELSRLETSNWQ 509


>gi|294788779|ref|ZP_06754020.1| type I restriction-modification system, M subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483261|gb|EFG30947.1| type I restriction-modification system, M subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 547

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/572 (16%), Positives = 193/572 (33%), Gaps = 85/572 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--------Y 59
              L   +W +A+ L       ++  ++L    L+ +  +    +  ++ +        Y
Sbjct: 12  LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSNPENPLY 71

Query: 60  LAFGGSNIDLESFVK-----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYI---A 105
           L     + D E                A   F+   +     + + +   N+ + +    
Sbjct: 72  LDRAFYDTDEEYQEALTIELENRDYYTADNVFWVPQQARWDEIKAVSIL-NIGAELPWGG 130

Query: 106 SFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP-- 151
            FS  AK I + FD       +L+               L  +   FS       T    
Sbjct: 131 KFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGE 190

Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   ++ ++YE+ + RF     +    + TP+ +V L   +L              
Sbjct: 191 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 239

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR ++
Sbjct: 240 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 296

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D  +  +       + ++     K+  + ++NPPF                  +  R+ 
Sbjct: 297 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 343

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  D
Sbjct: 344 YGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 397

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R   
Sbjct: 398 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 452

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504
            D   +I +   + +    S   + +    +   +       F+L         E +   
Sbjct: 453 TDDIAKIANTLHTWQT---SDGYEDQATFCKSATLEEIADNDFVLTPGRYVGTAEQEDDG 509

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +   Q+    + +   +        +  +
Sbjct: 510 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 541


>gi|327404778|ref|YP_004345616.1| adenine-specific DNA-methyltransferase [Fluviicola taffensis DSM
           16823]
 gi|327320286|gb|AEA44778.1| Site-specific DNA-methyltransferase (adenine-specific) [Fluviicola
           taffensis DSM 16823]
          Length = 521

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/546 (19%), Positives = 214/546 (39%), Gaps = 71/546 (13%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M + T  +  S+   +W +A  L G  + +++  V+L    L+      E  R  +  + 
Sbjct: 1   MAKQTAKNTKSIEETLWDSANKLRGTVESSEYKHVVLALIFLKFTSDKFEERRQELVAE- 59

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAK 112
              G                F+   E   S + +   +N++   I          + + K
Sbjct: 60  ---GKDKYLEMPEFYNMKNVFFLAEESRWSYIIANAKQNDISLKIDTALHTVEKNNASLK 116

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               D  FS     + K   L  +    + I+   D   D  +  +YE+ + +F     +
Sbjct: 117 GALPDNYFSRLNMDVSK---LAALLDTINNIDTLKDKQQDI-VGRVYEYFLSKFALAEGK 172

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP+ +V+L   ++                 +YDP CG+GG    +M  +     
Sbjct: 173 GKGEFYTPKSIVNLIAEMI-----------EPYKGVIYDPACGSGGMFVQSMKFIQSHHG 221

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           + K    +  +GQE    T+ +    + IR + ++     +       T +KD     + 
Sbjct: 222 NTK---DISIYGQEYTNTTYKLAKMNLAIRGISANLGAVAA------DTFAKDQHPDLKA 272

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
            + ++NPPF       +       +  +  R+ G  LP  S+ +  +++++A+KL    +
Sbjct: 273 DFIMANPPFN------QKDWRASDELTDDPRWKGYDLPPTSNANYAWILNMASKL----S 322

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  +L++  L  G     E +IR+ L+EN ++EA+V LP  +F+ T+I+  LWIL+
Sbjct: 323 ENGVAGFILANGALSGGGE---EYKIRKKLIENGVVEAVVILPRSMFYTTDISVTLWILN 379

Query: 412 NRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           N KTE              R+ ++  ++  ++         K    ++D  ++I   Y +
Sbjct: 380 NNKTERVVKHPDETRNYRNRKDEILFMDLREIGEPFEK---KFTQFSEDHIKEIAGTYHT 436

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL---EADITWRKLSPLHQSFW 515
            +  K S   D   + Y    +       + L  +        + +I +       Q+ +
Sbjct: 437 WQQ-KNSNYKDIPEYCYSA-TLENVKSKDYSLVPSKYIEFVNRDENIDFDDKMKSLQAEF 494

Query: 516 LDILKP 521
            ++LK 
Sbjct: 495 TELLKA 500


>gi|227517373|ref|ZP_03947422.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
 gi|227075243|gb|EEI13206.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
          Length = 529

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 196/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  +                 S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLADEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|222152467|ref|YP_002561642.1| type I restriction-modification system M protein [Streptococcus
           uberis 0140J]
 gi|222113278|emb|CAR40812.1| type I restriction-modification system M protein [Streptococcus
           uberis 0140J]
          Length = 516

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 119/493 (24%), Positives = 199/493 (40%), Gaps = 70/493 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------- 51
           M+E       L + IWK A+D+ G     DF + IL     R +    +           
Sbjct: 1   MSE-QAQRQELHSKIWKIADDVRGAVDGWDFKQYILGILFYRFISENFKNYMEAGDPNIN 59

Query: 52  RSAVREKY--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES------- 102
              V E           +  + +  +    F N  +   S   + N   +L++       
Sbjct: 60  YENVPESLITDDIKDDAVKTKGYFIMPNQLFSNIVK---SARTNDNLNTDLKAIFDAIQA 116

Query: 103 -YIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRV 154
             I   S+N  K +F+D D  +T  RL     EK   L  I +  + +   H +     +
Sbjct: 117 SAIGYESENDIKGLFDDVD--TTSNRLGNTVPEKNKRLADILEGIASLNFGHFEDNKIDL 174

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+LI  + S   +   +F TP++V  L   +++       K +      +YDP C
Sbjct: 175 FGDAYEYLISNYASNAGKSGGEFFTPQNVSKLLAKIVMLGRSESNKIN-----KIYDPAC 229

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A     +             +GQE+   T+ +    M +  +  D       
Sbjct: 230 GSGSLLLQAQKQFTEHVIEDG------FYGQEINLTTYNLARMNMFLHNINYDK-----F 278

Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           NIQ+G TL+       + F   +SNPP+   W    D            RF P   L   
Sbjct: 279 NIQRGDTLTDPKHGNDKPFDAIVSNPPYSINWIGKDDPT-----LINDDRFAPAGVLAPK 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F+MH  + L    +  GRAAIV+    L+ G A   E +IR++L++N+ +EAI+
Sbjct: 334 SKADFAFIMHSLSYL----SAQGRAAIVVFPGILYRGGA---EQKIRKYLVDNNFVEAII 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + +L+  KT         I+A+  +    N      ++ ++   +
Sbjct: 387 QLPNNLFFGTSIATCILVLAKNKT---NTDTLFIDASAEFKKATN----NNVLTEENIDK 439

Query: 452 ILDIYVSRENGKF 464
           IL+   ++EN  +
Sbjct: 440 ILESIENKENKDY 452


>gi|256854686|ref|ZP_05560050.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis T8]
 gi|256710246|gb|EEU25290.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis T8]
 gi|315030629|gb|EFT42561.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4000]
          Length = 529

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  ++                S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|32455489|ref|NP_862615.1| hypothetical protein pAH82_p16 [Lactococcus lactis subsp. lactis]
 gi|7767522|gb|AAF69138.1|AF228680_2 HsdM [Lactococcus lactis]
 gi|9789463|gb|AAF98315.1|AF243383_16 HsdM [Lactococcus lactis subsp. lactis]
          Length = 537

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/497 (20%), Positives = 189/497 (38%), Gaps = 78/497 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT---- 51
           M      A  L   +W +A+ L G    +++   +L     + L         E      
Sbjct: 1   MERRIIMATGLKQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKT 60

Query: 52  ---------RSAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                     +   E Y       I+     + +     + FY+        + + N   
Sbjct: 61  DTFPERSTQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDHLFYHY------RIKADNYEF 114

Query: 99  NLESYIASFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           NL    A F++  +       +F D D +ST       ++   + ++ +    I+L    
Sbjct: 115 NLTDLQAGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN 174

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               V+ + YE+LI  F +   + A +F TP+ V  + + +     ++           +
Sbjct: 175 GD--VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHI 226

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP  G+G  + +   ++ +          +  HGQEL   T  +    +++  ++ +  
Sbjct: 227 YDPAMGSGSLMLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM 279

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                N+  G TL  D  + + + +   + NPP+  KW      +          RFG  
Sbjct: 280 -----NLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-K 329

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I
Sbjct: 330 LAPKSKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAI 382

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP ++FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+
Sbjct: 383 DAVIGLPANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDE 435

Query: 448 QRRQILDIYVSRENGKF 464
              +I+  Y  RE+ + 
Sbjct: 436 HIDKIVSTYKKREDIER 452


>gi|326407943|gb|ADZ65012.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. lactis CV56]
          Length = 531

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52
           L   +W +A+ L G    +++   +L     + L         E                
Sbjct: 5   LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64

Query: 53  SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +   E Y       I+     + +       FY+        + + N   NL    A F+
Sbjct: 65  AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118

Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  +       +F D D +ST       ++   + ++ +    I+L        V+ + Y
Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  
Sbjct: 177 EYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++ +          +  HGQEL   T  +    +++  ++ +       N+  G
Sbjct: 231 MLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL  D  + + + +   + NPP+  KW      +          RFG  L   S     
Sbjct: 279 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++
Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y 
Sbjct: 387 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439

Query: 458 SRENGKF 464
            RE+ + 
Sbjct: 440 KREDIER 446


>gi|229547563|ref|ZP_04436288.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
 gi|229307336|gb|EEN73323.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
          Length = 529

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/483 (21%), Positives = 196/483 (40%), Gaps = 68/483 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGGS 65
            L   ++  A++L      +++   +L     + L   L  T         E+Y      
Sbjct: 4   ELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTKQ 63

Query: 66  NIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASFS 108
               +  ++                S+    +Y  S+L     +     ++L+      S
Sbjct: 64  TELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYLS 123

Query: 109 DNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE L
Sbjct: 124 SNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEFL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + +
Sbjct: 182 ISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLMLN 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             N++         P  +  HGQEL   T  +    +++  +E++       N++ G TL
Sbjct: 236 VRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDTL 283

Query: 283 SKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL+
Sbjct: 284 NKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFLL 338

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF 
Sbjct: 339 HGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFFG 391

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R+
Sbjct: 392 TSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIERQ 444

Query: 461 NGK 463
           + +
Sbjct: 445 DVE 447


>gi|169350757|ref|ZP_02867695.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552]
 gi|169292620|gb|EDS74753.1| hypothetical protein CLOSPI_01530 [Clostridium spiroforme DSM 1552]
          Length = 546

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 190/489 (38%), Gaps = 66/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52
           M E   ++  L + +W  A+ L       ++   +L     + L  +            +
Sbjct: 13  MAE-AENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLINDEK 71

Query: 53  ----SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL--ESYIAS 106
                   E+Y          E   ++     Y        T  +   RNN     Y+  
Sbjct: 72  PSSLKEALEEYREALKDESADELMEEIKSACHYVIEPDLTYTYFADAARNNSFNREYLQK 131

Query: 107 FSDNAK-------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             +N +        +F D D  S        +++  +  + K     +L        ++ 
Sbjct: 132 AFNNIEQSNPLFADLFTDIDLYSNRLGTGDQKQSDTISNLIKEIDKADLL--NTDADILG 189

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP+ V  + T + +   +           ++YDP  G+
Sbjct: 190 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAIAGQEN------KKGLSVYDPCMGS 243

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +  D       P  +  +GQEL   T+ +    M +  +  +     ++ +
Sbjct: 244 GSLLLNAKKYSKD-------PRNIKYYGQELMTSTYNLARMNMFLHGVVPE-----NQKL 291

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  T +   F   L NPP+  KW      ++ E  +     FG  L   S  
Sbjct: 292 RNGDTLDADWPTDEETNFDMVLMNPPYSAKWSAAAGFLQDERFSD----FGV-LAPKSKA 346

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ LP
Sbjct: 347 DYAFLLHGLYHLKNS----GTMAIVLPHGVLFRGVA---EGKIREKLLRSGNIYAVIGLP 399

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L   +       V  I+A+  +    N+GKK+  + D+    ++D
Sbjct: 400 ANLFYNTSIPTCIVVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIESVID 452

Query: 455 IYVSRENGK 463
           +Y+ RE   
Sbjct: 453 LYMKRETVD 461


>gi|261366732|ref|ZP_05979615.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
 gi|282571559|gb|EFB77094.1| ribosomal protein L11 [Subdoligranulum variabile DSM 15176]
          Length = 524

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/554 (18%), Positives = 210/554 (37%), Gaps = 70/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY   G   +D  +F  
Sbjct: 18  LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDNVAFY- 73

Query: 75  VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127
                F+    S +S         +    +++    I   +   K         +  +RL
Sbjct: 74  TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALP----DNYYSRL 129

Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  +      I        + ++  +YE+ + +F     +G  +F TP+ +V+L
Sbjct: 130 HIDTAKLASLLDEIDKINTGDK--ENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 187

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++   D             LYDP CG+GG    +M  V     + K    +  +GQE
Sbjct: 188 IAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAHHGNKKK---VSIYGQE 233

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +C   + IR + ++     +      +T + D     +  Y ++NPPF     
Sbjct: 234 YTNTTYKLCKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 283

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     +++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 284 --QKEWRGDNELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 337

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
            +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K           
Sbjct: 338 SDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEETGEV 394

Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471
                R  ++  ++   + +       K   + ++ R ++  +Y + +   +        
Sbjct: 395 KRFRNREREILFMDLRQMGSPYEK---KYIELTEEDRAKVTGVYHAWQQEGYEETYQNVP 451

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y            F L  +                  ++   ++   ++ +      
Sbjct: 452 EFCYSA-SFDEVAEKGFTLVPSRYIEFVNRDENIDFDTKMKALQSELRDLLIAEEKSKAD 510

Query: 532 AESFVKESIKSNEA 545
             +  KE     E 
Sbjct: 511 LLTVFKELGYEIEL 524


>gi|257417159|ref|ZP_05594153.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis AR01/DG]
 gi|257158987|gb|EEU88947.1| type I restriction modification system protein HsdMI [Enterococcus
           faecalis ARO1/DG]
          Length = 529

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/484 (21%), Positives = 196/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  +                 S+    +Y  ++L     +     ++L+      
Sbjct: 63  QTELYKELLADEDSRQDLVDTLVDTLSYDIEPDYLFNSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|300070273|gb|ADJ59673.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 539

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 186/487 (38%), Gaps = 78/487 (16%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT-------------R 52
           L   +W +A+ L G    +++   +L     + L         E                
Sbjct: 5   LNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKTDTFPERSTQY 64

Query: 53  SAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +   E Y       I+     + +       FY+        + + N   NL    A F+
Sbjct: 65  AGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEFNLTDLQAGFN 118

Query: 109 DNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +  +       +F D D +ST       ++   + ++ +    I+L        V+ + Y
Sbjct: 119 ELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHNGD--VIGDAY 176

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ V  + + +     ++           +YDP  G+G  
Sbjct: 177 EYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHIYDPAMGSGSL 230

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++ +          +  HGQEL   T  +    +++  ++ +       N+  G
Sbjct: 231 MLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM-----NLNNG 278

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL  D  + + + +   + NPP+  KW      +          RFG  L   S     
Sbjct: 279 DTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPKSKADFA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++ LP ++
Sbjct: 334 FLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVIGLPANI 386

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+   +I+  Y 
Sbjct: 387 FFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDEHIDKIVSTYK 439

Query: 458 SRENGKF 464
            RE+ + 
Sbjct: 440 KREDIER 446


>gi|91772524|ref|YP_565216.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91711539|gb|ABE51466.1| N-6 DNA methylase [Methanococcoides burtonii DSM 6242]
          Length = 568

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 97/561 (17%), Positives = 188/561 (33%), Gaps = 113/561 (20%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-- 66
                 +WK A+ L  +    ++  V+L    L+ +  A E  ++ + E +      N  
Sbjct: 10  KEFETKLWKAADKLRSNMDVANYKHVVLGLIFLKYVSDAFEERQNELVELFKKDDDENIY 69

Query: 67  ----------------IDLESFVK---VAGYSFYNTSEYSLSTLGSTNT----------- 96
                           I  E  ++        F+         L   +            
Sbjct: 70  YLPREDYSSTEEYQHAIAEELEIRDYYAEKNVFWVPKTARWDILKEKSVLSLNTVIWQNE 129

Query: 97  -------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG- 142
                         +N    I   +   K I               +  L  +  NFS  
Sbjct: 130 QGKDVKLKSVSWLIDNALDEIEKANPKLKGILNRIGQYQL-----DSEKLIGLINNFSNT 184

Query: 143 -------IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
                   +   +     ++ ++YE+ + +F     +    + TP+ +V L   +L    
Sbjct: 185 RFHHPEFNDKKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML---- 240

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEPE 250
                        +YDP  G+GGF   +   +         +  +    +  +GQE  P 
Sbjct: 241 -------EPYKGRVYDPAMGSGGFFVSSDKFIENHANVKHYNASEQKKQISVYGQESNPT 293

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T  +    M IR ++ +  +      +   +   D     R  + ++NPPF  K      
Sbjct: 294 TWKLAAMNMAIRGIDFNFGK------KNADSFLDDQHPDLRADFVMANPPFNMKEW---- 343

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 K  +  R+  G P  ++ +  ++ H+ + L      G  A ++ + S   N   
Sbjct: 344 ---WHEKLADDPRWKYGTPPKNNANFAWMQHMLHHLAPT---GSMALLLANGSMSSNTNN 397

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-----RRGKVQLI 425
              E +IR+ L+END++E +VALP  LF  T I   +  L+  K  +     R G++  I
Sbjct: 398 ---EGKIRKTLVENDIVECMVALPGQLFTNTQIPACICFLTKDKAAKDDKRNRHGEILFI 454

Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR----RIKV 480
           +A +L +   R      R   D+  ++I D + + ++       D    G+        +
Sbjct: 455 DARNLGFMKDRVL----RDFKDEDIQRIADTFHTWQHN---WSEDKNEPGFCFSANHATI 507

Query: 481 LRPLRMSFILDKTGLARLEAD 501
            +    +F+L        EA+
Sbjct: 508 EK---HNFVLTPGRYVGAEAE 525


>gi|300727765|ref|ZP_07061149.1| type I restriction-modification system methyltransferase subunit
           [Prevotella bryantii B14]
 gi|299774975|gb|EFI71583.1| type I restriction-modification system methyltransferase subunit
           [Prevotella bryantii B14]
          Length = 513

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 178/469 (37%), Gaps = 49/469 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            + T S   L +F+W  A  L G      + + I P    +R+    +        +   
Sbjct: 13  ADETISLDELKSFLWSAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFDGFVAEGGE 72

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAK------A 113
                   E  +++   + +         +G         +E        + +       
Sbjct: 73  EYAGMQAAELAIRIPDGAHWRDVREVTENVGQRLVEAFIAIEQANPGEEADGRVIGGLDG 132

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF   D  +   ++    ++  + ++FS   L   + P   M   YE+L+ +F  +    
Sbjct: 133 IFGPKDGWTNKNKMPDH-IITSLIEDFSRYNLGLSSCPADEMGQAYEYLVGKFADDAGNT 191

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A++F T R VV L   +L           P    ++YDPTCG+GG L   ++ +   G  
Sbjct: 192 AQEFYTNRTVVTLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDFLRQKGL- 240

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
                 +   GQE+   T ++    + +  +E         +I +  TL+   F      
Sbjct: 241 --PWQGVKVFGQEINALTASIARMNLYLNGVE-------DFSIVREDTLAHPAFVDGSHL 291

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++F   L+NPP+               ++ + GR   G P        F+ H+   +   
Sbjct: 292 RKFDIVLANPPYSISEWN-----RSAFEHDKWGRNMWGTPPQGRADYAFIQHIVASMNND 346

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR AI+L    LF       ESE+R+ L+ +D IEA++ L  +LF+   +   + I
Sbjct: 347 H---GRCAILLPHGILFRNE----ESEVRKGLVLSDKIEAVIGLGPNLFYNAPMEACILI 399

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            +NRK +E + KV  INA   +   R        + +   ++I + Y S
Sbjct: 400 CNNRKAKELKNKVIFINAK--YEVTRK--NAESFLENSHIKKIAEAYKS 444


>gi|199581425|gb|ACH89414.1| FclIM [Flavobacterium columnare]
          Length = 814

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 114/579 (19%), Positives = 215/579 (37%), Gaps = 85/579 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +WK+ ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKSELYSSLWKSCDELRGGMDASQYKDYVLTLLFVKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +     G SF       +  L  T N  +++   I +    A  + +  DF+ 
Sbjct: 45  YKGKKFSAIKVPEGASF-----DDMVALVGTPNIGDDINKKILNPIKEANKLNDFPDFND 99

Query: 123 TIARLEKAGLL----YKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
              +L K   L     K+   F+  +L     +   D ++ + YE+L+R F ++  +   
Sbjct: 100 E-TKLGKGKNLVDTVGKLILIFNSPDLDFSSNNANDDDLLGDAYEYLMRHFATDSGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++      +  ++     T YDPTCG+G  L               
Sbjct: 159 QFYTPSEVSKVLAKVI-----GITPQNSNAQTTAYDPTCGSGSLLLKVAEAAEKTID--- 210

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------ 289
                  +GQE E  T  +    M++         + S  I    TLS   F        
Sbjct: 211 ------LYGQEKEFATANLAKMNMILHG-------NPSAEIIADDTLSHPYFKSDNDDDN 257

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            K F Y +SNPPF  K   +  ++    KN    RF  G+P   +G   FL+H+   ++ 
Sbjct: 258 LKSFDYIVSNPPFSLKSWSNGVSI----KNDPYKRFELGVPPEKNGDYAFLLHIIKSMKS 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+AAIVL    LF G A   E+EIR+ +++   I+ I+ LP +LF+ T I   + 
Sbjct: 314 T----GKAAIVLPHGVLFRGNA---EAEIRKEIIKKGFIKGIIGLPANLFYGTGIPACII 366

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           +L        R  + +++A+  +T    +G K R + +    +I+D++ +          
Sbjct: 367 VLDKE-NAHNRSHIFMMDASKGFT---KDGNKNR-LQEKNIHKIVDVFNNELEVP----- 416

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                  R++++          +   + R         +  +    +  I +  ++ +  
Sbjct: 417 ----KYSRKVEIKEISDDKNDYN-LNIPRYIDAQEEEDIQDIDAHIFGGIPERDIEALGK 471

Query: 529 YGWAESFVKESIKSNEAKT-LKVKASKSFIVAFINAFGR 566
           Y      +K  +   + K    +K  +S I   I  F  
Sbjct: 472 YWNIFPNLKNDLFVLQRKGYYDLKIDRSQIKNTIFNFQE 510


>gi|253569550|ref|ZP_04846960.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841569|gb|EES69650.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 512

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/480 (18%), Positives = 173/480 (36%), Gaps = 53/480 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +F+W  A  L G      + + I P    +R+    +        +      + 
Sbjct: 16  SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGYVCEGGIEYANA 75

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD----------NAKAIFE 116
              E  +++   + +         +G       +   I   +             + IF 
Sbjct: 76  QAQELVIRIPDGAHWRDVRECTENVGQRLVEAFI--AIEQANPGEHADGRVIGGLEGIFG 133

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +    A++
Sbjct: 134 PKDGWTNKAKMPDH-IITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F T R VV L   +L           P    ++YDPTCG+GG L   ++ +       + 
Sbjct: 193 FYTNRTVVDLMAEIL----------QPRPGESIYDPTCGSGGMLVKCLDFLR---KKGEP 239

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
              +   GQE+   T A+    + +  +E         +I +  TL+   F      ++F
Sbjct: 240 WQGVKVFGQEINALTSAIARMNLYLNGVE-------DFSIVREDTLAHPAFVDGSRLRKF 292

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPP+  K         +   N + GR   G P        F  H+   ++     
Sbjct: 293 DIVLANPPYSIKTWN-----REAFMNDKWGRNFLGTPPQGRADYAFFQHILASMDDKT-- 345

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR AI+     LF       E  +R  L+++D++E ++ L  +LF+ + +   + I +N
Sbjct: 346 -GRCAILFPHGVLFRDE----EQSLREKLIKSDVVECVIGLGANLFYNSPMEACILICNN 400

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           +K    + K+  INA    T           +      +I+  Y +    +    +    
Sbjct: 401 QKRSTLKNKIIFINALKEVTR----KNAESYLEKVHIEKIVSAYFNASEIQNFSTVASLE 456


>gi|225026005|ref|ZP_03715197.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353]
 gi|224956655|gb|EEG37864.1| hypothetical protein EUBHAL_00243 [Eubacterium hallii DSM 3353]
          Length = 532

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 123/580 (21%), Positives = 214/580 (36%), Gaps = 91/580 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M E   ++  L + +W  A+ L       ++   +L     + L  +             
Sbjct: 1   MAEI-ENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDMICDGK 59

Query: 50  -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIA 105
             T     E Y     S    E   ++     Y       Y+     + N   N E    
Sbjct: 60  PGTLKEALEAYEEVLQSEDGEELKAEMKQECHYVIEPELTYTCFADAARNNSFNREQLQK 119

Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           +F+           +F D D  S        +++  +  + K     +L        ++ 
Sbjct: 120 AFNNIEQSDPIFADLFTDIDLYSNRLGTGDQKQSDTVANLIKEIDKADLLNSDAE--ILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP+ V  + T + +D  +           ++YDP  G+
Sbjct: 178 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAIDGQEE------KKGLSVYDPCMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +V       K P  +  +GQEL   T+ +    M +  +        ++ +
Sbjct: 232 GSLLLNAKKYV-------KYPEYIRYYGQELNTSTYNLARMNMFLHGI-----VAENQKL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  TG+   F+  L NPP+  KW      ++ E  +         L   S  
Sbjct: 280 RNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDERFSDYGV-----LAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ LP
Sbjct: 335 DYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIGLP 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L   +       V  I+A+  +    N+GKK+  + D+    ++D
Sbjct: 388 ANLFYNTSIPTCIIVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIEAVMD 440

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +Y  RE                   V +    SF+     + + + ++   +     +  
Sbjct: 441 LYSKRE------------------TVEK---ESFLASFEDIEKNDFNLNIPRYVDTFEKE 479

Query: 515 ----WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
                 ++LK M Q       AE      +K   +   K+
Sbjct: 480 PEIDLNEVLKEMEQTNKEIEQAEGEFLSLLKELTSSDEKI 519


>gi|294619904|ref|ZP_06699280.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
 gi|291593841|gb|EFF25339.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
          Length = 531

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 210/546 (38%), Gaps = 73/546 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEHVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDN-- 110
                           +    +     Y    EY  + L     +   +  +   +    
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIVPEYLFNVLADQAKQATFQ--LNDLNKAFV 120

Query: 111 --------AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                      +F+D D  S        ++   + ++ K  + +++        V+ + Y
Sbjct: 121 QLASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVL--EHDGDVIGDAY 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  
Sbjct: 179 EFLISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G
Sbjct: 233 MLNVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNG 280

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     
Sbjct: 281 DTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 336 FLLHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y 
Sbjct: 389 FFGTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYA 441

Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    
Sbjct: 442 ERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEK 501

Query: 517 DILKPM 522
           ++L+ +
Sbjct: 502 ELLEAI 507


>gi|10954529|ref|NP_044168.1| type I restriction system protein M [Methanocaldococcus jannaschii
           DSM 2661]
 gi|2496240|sp|Q60297|T1MH_METJA RecName: Full=Putative type I restriction enzyme MjaXP M protein;
           Short=M.MjaXP
 gi|1522675|gb|AAC37111.1| type I restriction enyzme ECOR124/3 I M protein [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 558

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 103/549 (18%), Positives = 209/549 (38%), Gaps = 58/549 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
              N +WK A+ L    +   +  V+L    LR L C     R  + E+           
Sbjct: 47  EFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEEELSNPNSELYTE 106

Query: 70  ESFVKV---AGYSFYNTS---------EYSL--STLGSTNTRNNLESYIA----SFSDNA 111
           +  ++        FY +           +      + S N    +++ I      + D  
Sbjct: 107 DPELRKMILEDEDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRL 166

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K +       S    L+     Y +   FS I    +     V   IYE+ + +F     
Sbjct: 167 KDVIPKIYAQSP---LDNHDYSY-LINKFSEISFGKEHRVKDVFGRIYEYFLGKFTEVEG 222

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR +  L   +L                +++DP CG+GGF   A+  +   G
Sbjct: 223 KLGGKFYTPRSLTKLIVDVLDV-----------KGGSIFDPACGSGGFFVSALEKLEREG 271

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +GQ+ +P  + +    ++IR  E D        I+   +   D F    
Sbjct: 272 IDINEL---SIYGQDSDPMAYRLTKMNLIIRGAEGD--------IRIDDSYHDDKFMDMT 320

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F Y ++NPPF      D + ++ +     +G     +P   + + ++++H          
Sbjct: 321 FDYVVANPPFNDSEW-DANRIKPDDPRLRIGNKKVPVPPNGNANYMWILHFIYHTAP--- 376

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A  V+++  L  G     E EIR+ ++ENDL+  IVA P  LF+  ++   LW + 
Sbjct: 377 -NGKAGFVMANGALSAGNV---EGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIR 432

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K +  +GKV  INA +L+   +   +++ I+ ++  ++I+D +   E+G+    ++  
Sbjct: 433 KEKPDYMKGKVLFINAKNLY---KQISRRQNILTEEHIKKIVDKFRMFESGEDEDKIN-- 487

Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             G+ ++  +    +  ++L       ++ +          + +  ++ K + ++     
Sbjct: 488 ELGFAKVATIDEIAKNGYVLTPGRYVGVKIEDDGIPFEVKMKEYSEELKKLLDEEEKLRN 547

Query: 531 WAESFVKES 539
             +  +   
Sbjct: 548 KVKEILDAL 556


>gi|125623518|ref|YP_001032001.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|124492326|emb|CAL97260.1| putative type I site-specific deoxyribonuclease [Lactococcus lactis
           subsp. cremoris MG1363]
          Length = 545

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/497 (20%), Positives = 188/497 (37%), Gaps = 78/497 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT---- 51
           M      A  L   +W +A+ L G    +++   +L     + L         E      
Sbjct: 1   MERRIIMATGLNQQLWASADILRGKMDASEYKNYLLGLIFYKYLSDAQLREVYEQENGKT 60

Query: 52  ---------RSAVREKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                     +   E Y       I+     + +       FY+        + + N   
Sbjct: 61  DTFPERSTQYAGFMEWYEEDKDDLIENIQPKQGYFIQPDQLFYHY------RIKADNYEF 114

Query: 99  NLESYIASFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           NL    A F++  +       +F D D +ST       ++   + ++ +    I+L    
Sbjct: 115 NLTDLQAGFNELERQGEEFSGLFADIDLNSTKLGSNAQQRNVTITEVLRALDEIDLFEHN 174

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               V+ + YE+LI  F +   + A +F TP+ V  + + +     ++           +
Sbjct: 175 GD--VIGDAYEYLIGMFAAGAGKKAGEFYTPQAVSRIMSEITSIGQESR------APFHI 226

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP  G+G  + +   ++ +          +  HGQEL   T  +    +++  ++ +  
Sbjct: 227 YDPAMGSGSLMLNIRRYLINPN-------QVHYHGQELNTTTFNLARMNLILHGVDKERM 279

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                N+  G TL  D  + + + +   + NPP+  KW      +          RFG  
Sbjct: 280 -----NLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-K 329

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I
Sbjct: 330 LAPKSKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAI 382

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +A++ LP ++FF T+I T + IL   ++      V  I+A+  +   +N    + ++ D+
Sbjct: 383 DAVIGLPANIFFGTSIPTTVIILKKNRSRR---DVLFIDASQDFEKQKN----QNVLLDE 435

Query: 448 QRRQILDIYVSRENGKF 464
              +I+  Y  RE+ + 
Sbjct: 436 HIDKIVSTYKKREDIER 452


>gi|308190009|ref|YP_003922940.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|307624751|gb|ADN69056.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
          Length = 540

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/540 (22%), Positives = 218/540 (40%), Gaps = 64/540 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---EPTRSAVR-- 56
                  A L   IWK A DL G     DF + +L F   R +   L     T+      
Sbjct: 15  NSKEAQRAELHKTIWKIANDLRGSVDGWDFKQYVLGFLFYRYISENLTNFVNTKQEEAGV 74

Query: 57  ----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                     ++      + I  + F  +    F N ++   + L    T +N+   I +
Sbjct: 75  KDFDYAEISDKQANEIRNTLIQEKGFFILPSKLFKNVAKNCRNDLNLNETLDNIFKGIEA 134

Query: 107 F-----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RV 154
                 S+N  K +F D + ++   +L     E+   L  I +  + ++L      +   
Sbjct: 135 SAIGTPSENDIKGLFNDVNVNN--DKLGNNVIERNKKLSGILEAINEMQLGDFHGHNIDA 192

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + +   +   +F TP++V  L  +L L    +  +E    + ++YDP C
Sbjct: 193 FGDAYEYLMTMYAANAGKSGGEFFTPQEVSELLASLTLVDFSSDKREMKKEVDSVYDPAC 252

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +       K        GQE+   T+ +    M +  +          
Sbjct: 253 GSGSLLLKFAKIL------GKDKVTKGFFGQEINLTTYNLARINMFLHGINF-----ADF 301

Query: 275 NIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
           +I+ G TL+   +    K F   +SNPP+  KW+ D +            RF P   L  
Sbjct: 302 SIKHGDTLNHPQYFENVKNFEAIVSNPPYSIKWDGDTNTT-----LINDRRFAPAGVLAP 356

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F+MH+ + L    +  G AAIV     L+ G A   E +IR++L++N+ ++AI
Sbjct: 357 KSKADLAFVMHILHLL----SAKGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYVDAI 409

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP++LFF T+IAT + +L   K +     +  INA++ +   +N       + D+   
Sbjct: 410 IQLPSNLFFGTSIATCIIVLRKNKKDS---DILFINASNEFIKEKN----NNKLTDENIN 462

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
            ILDIY   +  ++ SR + Y         +     +        +  ++ +   ++L+ 
Sbjct: 463 NILDIYRYTKEKEYVSRNVPYEEVKENDYSLSVSTYVKAKDTSEKIDIVQVNAQLKELTK 522


>gi|262374258|ref|ZP_06067534.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
 gi|262310816|gb|EEY91904.1| type I restriction-modification system, M subunit [Acinetobacter
           junii SH205]
          Length = 576

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/524 (17%), Positives = 167/524 (31%), Gaps = 105/524 (20%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L + +WK A+ L       ++  ++L    L+ +  A +  +S ++E +      NI
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68

Query: 68  -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTN----------- 95
                              D    +        F+       S +               
Sbjct: 69  YYMPRDQYDSEEEYQQAIADELEILDYYQEKNVFWVPKAGRWSNIRDAAALPIGSVIWQD 128

Query: 96  -------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                          +N    I   +   K I                  L  +   FS 
Sbjct: 129 EQGADVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183

Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
                              ++ ++YE+ + +F     +    + TP+ +V L   +L   
Sbjct: 184 TSFTNPEYNGEQLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249
                   P   R +YDP  G+GGF   +   +            +    +  +GQE  P
Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNP 292

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +    M IR ++ +  +      +   +  +D     R  + ++NPPF  K     
Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADSFLEDQHPDLRADFVMANPPFNIK----- 341

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                        R+  G P   + +  ++ H+ + L      G  A ++ + S   N  
Sbjct: 342 --DWWHASLENDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420
               E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R G
Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           K   I+A +L           R   D    +I +   + + G+ 
Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITNALHAWQQGEN 494


>gi|257900171|ref|ZP_05679824.1| type I restriction-modification system M subunit [Enterococcus
           faecium Com15]
 gi|293379346|ref|ZP_06625491.1| type I restriction-modification system, M subunit [Enterococcus
           faecium PC4.1]
 gi|257838083|gb|EEV63157.1| type I restriction-modification system M subunit [Enterococcus
           faecium Com15]
 gi|292642038|gb|EFF60203.1| type I restriction-modification system, M subunit [Enterococcus
           faecium PC4.1]
          Length = 531

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/544 (19%), Positives = 211/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  +   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|145634363|ref|ZP_01790073.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittAA]
 gi|229845102|ref|ZP_04465237.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 6P18H1]
 gi|145268343|gb|EDK08337.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittAA]
 gi|229811938|gb|EEP47632.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 6P18H1]
          Length = 558

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/572 (15%), Positives = 188/572 (32%), Gaps = 85/572 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 23  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 82

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNL--ES 102
                    E+Y     + ++   +   A   F+        TL      NT   L    
Sbjct: 83  LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQTLQEVSILNTGAELPWGG 141

Query: 103 YIASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP-- 151
            ++  +      F+            + R+         L  +   FS       T    
Sbjct: 142 KLSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGE 201

Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   ++ ++YE+ + RF     +    + TP+ +V L   +L              
Sbjct: 202 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 250

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR ++
Sbjct: 251 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 307

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D  +  +       + ++     K+  + ++NPPF                  +  R+ 
Sbjct: 308 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 354

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  D
Sbjct: 355 YGTPTKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 408

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP+ LF  T I   +W L+  K  +R+G+V  I+A  +           R   
Sbjct: 409 LVECMVALPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 463

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504
            +   +I D   + +    S   + +    +   +       F+L         E +   
Sbjct: 464 ANDIAKIADTLHAWQT---SDGYEDQAAFCKSATLEDIAGYEFVLTPGRYVGTAEQEDDG 520

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +   Q+    + +   +        +  +
Sbjct: 521 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 552


>gi|218133858|ref|ZP_03462662.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991233|gb|EEC57239.1| hypothetical protein BACPEC_01747 [Bacteroides pectinophilus ATCC
           43243]
          Length = 523

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/554 (17%), Positives = 206/554 (37%), Gaps = 70/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +    G          
Sbjct: 17  LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH----GEKYADMKPFY 72

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E     +     ++++          I   +   K         +  +RL
Sbjct: 73  TQENVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 128

Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  +    + I    D   + ++  +YE+ + +F     +G  +F TP+ +V+L
Sbjct: 129 HIDTAKLASLLDEINRINT--DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 186

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L   D             LYDP CG+GG    ++  V     + K    +  +GQE
Sbjct: 187 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T  +    + IR + ++     +      +T + D     +  + ++NPPF     
Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADFIMANPPFN---- 282

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     E++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 283 --QKQWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 336

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
            +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K           
Sbjct: 337 SDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQNGKL 393

Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471
               +R  ++  ++   + +       K   + ++ R ++  +Y + +   +    +   
Sbjct: 394 KRYRDREDEILFMDLRQMGSPYEK---KYIELTEEDRAKVTSVYHNWQQEGYEETYENVP 450

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y            F L  +                  +S   ++ + ++Q+      
Sbjct: 451 EFCYSA-SFEEVKEKGFTLVPSRYIEFVNRDENIDFDTKMKSLQGELKELLVQEEKSKSD 509

Query: 532 AESFVKESIKSNEA 545
             +  KE     E 
Sbjct: 510 LLAVFKELGYEIEL 523


>gi|15603402|ref|NP_246476.1| hypothetical protein PM1537 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721926|gb|AAK03621.1| HsdM [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 568

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 98/585 (16%), Positives = 193/585 (32%), Gaps = 99/585 (16%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48
           M          L   +WK+A+ L  + +  ++  VIL    L+ +  A            
Sbjct: 1   MNNSEQQYLNELDAKLWKSADKLRSNIEAANYKHVILSLIFLKYVSDAFLARQHSIQQQL 60

Query: 49  -EPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---T 96
            +P              E+Y     + ++   +       F+         L +      
Sbjct: 61  TDPEHLYYLDPSFYDSEEEYQQALANELEQLDYY-TEENVFWVPKTARWDVLKTKATTPV 119

Query: 97  RNNLESYIASFSDNAKAI----------FEDFD--FSSTIARLE----KAGLLYKICKNF 140
              L           + +           E  +    + +AR+     +   L ++   F
Sbjct: 120 GAVLWQDEQGEDVKMRNVSWLVDLALDTIEKSNDKLKNILARISQYQVEDNRLIELISLF 179

Query: 141 SGIELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           S              +     ++ ++YE+ + +F     +   ++ TP+ +V+L   +L 
Sbjct: 180 SDTYFANPEYQGEKLNLKSKDILGHVYEYFLGKFALAEGKNGGEYYTPKSIVNLIVEMLQ 239

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVPHGQEL 247
                           ++DP  G+GGF       +            +    +  +GQE 
Sbjct: 240 PYQG-----------RVFDPAMGSGGFFVSNDKFIETHAKEKHYASDEQRRRISIYGQES 288

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T  + V  M+IR ++ +  +      +   + ++D     R  + ++NPPF K    
Sbjct: 289 TSTTWKLAVMNMVIRGIDFNFGK------KHADSFTEDQHPDLRADFVMANPPFNKD--- 339

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                          R+  G P + + +  ++ H+   L      G  A ++ + S   N
Sbjct: 340 ----DWWHESLEHDARWQYGTPPVGNANFAWVQHMLYHLAPT---GSMALLLANGSMSSN 392

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEER 418
                GE EIR+ L++ D++E +V+LP  LF  T I   +W L+          +K   R
Sbjct: 393 TG---GEGEIRKRLIDEDVVECMVSLPDKLFTNTRIPACIWFLTKDKKNGVSFDKKKRNR 449

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
            G+V  I+A  L           R   D   ++I+  + + + G+     D   F Y   
Sbjct: 450 SGEVLFIDARQLGYMKDRV---LRDFTDADTQKIVQTFHNWQYGE--SYQDEAGFCYSA- 503

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           K+    +  +IL         A     +           +L   M
Sbjct: 504 KLADIQKHDYILTPGRYVGAVAQEEDCEPFAEKMQKLTALLNQQM 548


>gi|323700559|ref|ZP_08112471.1| type I restriction-modification system, M subunit [Desulfovibrio
           sp. ND132]
 gi|323460491|gb|EGB16356.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 540

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 115/504 (22%), Positives = 191/504 (37%), Gaps = 79/504 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKY 59
           MTE       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTESNQKR--LGQILWDIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEQAAKKELGKDY 58

Query: 60  -------------------LAFGGSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNT 96
                                 G      +   + A Y       ++    ++   +   
Sbjct: 59  PDPNAVDNGGRTPLSVWYDNNPGDIAAFEKQMRRKAHYVIKPDHLWTNIAYMAKTQNDEL 118

Query: 97  RNNLES---YI--ASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELH 146
            N L+    YI   SF      +F + +  S   +L K        L  I    +   L 
Sbjct: 119 LNTLQEGFKYIENESFESTFSGLFSEINLGS--EKLGKTYQNRNDKLCTIITKIAD-GLA 175

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             T     + + YE+LI +F +   + A +F TP+ +  + +A++              +
Sbjct: 176 DFTTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDGQDPKTGPRKKL 235

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            ++ D  CG+G  L +  + + + G         + +GQE    T+ +C   ML+  ++ 
Sbjct: 236 ASVMDFACGSGSLLLNVRHKMVNAGGSVG-----MIYGQEKNITTYNLCRMNMLLHGVK- 289

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
               D    I  G TL+ D    +         F   ++NPPF  +WE ++         
Sbjct: 290 ----DSEFEIFHGDTLTNDWDKLREQNPAKKPTFDAVVANPPFSYRWEPNEA-------L 338

Query: 319 GELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           GE  RF   GL   S     FL+H  + L+      G  AI+L    LF G     E+ I
Sbjct: 339 GEDMRFKNYGLAPKSAADFAFLLHGFHYLKDE----GVMAIILPHGVLFRGGK---EAAI 391

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           RR LLE+  I+ ++ LP +LF+ T I   + +L   K       V +INA + +      
Sbjct: 392 RRKLLEDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKP---DDVLIINAAEHFEK---- 444

Query: 438 GKKRRIINDDQRRQILDIYVSREN 461
           GK++  +N +   +I+D Y  R  
Sbjct: 445 GKRQNYLNAEHIDKIIDTYQQRPE 468


>gi|154499002|ref|ZP_02037380.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC
           29799]
 gi|150271842|gb|EDM99068.1| hypothetical protein BACCAP_02994 [Bacteroides capillosus ATCC
           29799]
          Length = 524

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 104/554 (18%), Positives = 210/554 (37%), Gaps = 70/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY   G   +D  +F  
Sbjct: 18  LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDNVAFY- 73

Query: 75  VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127
                F+    S +S         +    +++    I   +   K         +  +RL
Sbjct: 74  TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALP----DNYYSRL 129

Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  +      I        + ++  +YE+ + +F     +G  +F TP+ +V+L
Sbjct: 130 HIDTAKLASLLDEIDKINTGDK--ENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 187

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++   D             LYDP CG+GG    +M  V     + K    +  +GQE
Sbjct: 188 IAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAHHGNKKK---VSIYGQE 233

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +C   + IR + ++     +      +T + D     +  Y ++NPPF     
Sbjct: 234 YTNTTYKLCKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 283

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     +++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 284 --QKEWRGDNELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 337

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
            +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K           
Sbjct: 338 SDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEENGEV 394

Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471
                R  ++  ++   + +       K   + ++ R ++  +Y + +   +        
Sbjct: 395 KRFRNREREILFMDLRQMGSPYEK---KYIELTEEDRAKVTGVYHAWQQEGYEETYQNVP 451

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y            F L  +                  ++   ++   ++ +      
Sbjct: 452 EFCYSA-SFDEVAEKGFTLVPSRYIEFVNRDENIDFDTKMKTLQSELRDLLVAEEKSKAD 510

Query: 532 AESFVKESIKSNEA 545
             +  KE     E 
Sbjct: 511 LLTVFKELGYEIEL 524


>gi|256853743|ref|ZP_05559108.1| type I restriction-modification system M subunit [Enterococcus
           faecalis T8]
 gi|256710686|gb|EEU25729.1| type I restriction-modification system M subunit [Enterococcus
           faecalis T8]
 gi|315030240|gb|EFT42172.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX4000]
 gi|315144777|gb|EFT88793.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2141]
          Length = 530

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 211/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  S   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQNR---DVLFIDASREFVK----GKNQNKLSEENIQKILENYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|167856382|ref|ZP_02479108.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis 29755]
 gi|167852488|gb|EDS23776.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis 29755]
          Length = 537

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/577 (21%), Positives = 209/577 (36%), Gaps = 88/577 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MT+       L   +W  A+ L G     DF   +L F  LR L    E        +  
Sbjct: 1   MTQ--EQLNQLGKTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYELAAQKELGRDY 58

Query: 59  ---------------YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRN 98
                          Y        D E  ++   +          S   L+ + ST   +
Sbjct: 59  PQLSNDDKRTPLAVWYQENADFTADFEKQMRRKVHYVIKPEYLWGSIAELARVQSTELLS 118

Query: 99  NLE---SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
            L+    YI   SF      +F + + +S   +L     E+   L +I K  +   +   
Sbjct: 119 TLQQGFKYIENESFESTFGGLFSEINLNS--EKLGKSYTERNNKLAEIVKRIAE-GISEF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F S   + A +F TP+ V  + + ++              + +
Sbjct: 176 SADSDALGDAYEYLIAQFASGSGKKAGEFYTPQQVSTILSQIVTLDSQNPASGKKKKLDS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +  + +A+ G H         +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRHQMAENGGHIGK-----IYGQEKNITTYNLARMNMLLHGVK--- 287

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G +L  D              F   ++NPPF  +W+  +D          
Sbjct: 288 --DTEFAIHHGDSLINDWDILNEMNPARKLEFDAVVANPPFSYRWDPKEDLAN------- 338

Query: 321 LGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF G GL   S     FL+H  + L    +  G  AI+L    LF G A   E +IR+
Sbjct: 339 DFRFNGYGLAPKSAADFAFLLHGFHFL----SDNGTMAIILPHGVLFRGGA---EEKIRK 391

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL +  I+A++ LP +LF+ T I   + +L   K E     +  INA D +   +    
Sbjct: 392 KLLNDGNIDAVIGLPANLFYSTGIPVCILVLKKCKKE---DDILFINAADAFEKSKR--- 445

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGLARL 498
            +  + D+   +I++ Y  R+  +          GY +RI V       + L+       
Sbjct: 446 -QNRLTDEHIAKIIEHYQYRKETQ----------GYAKRISVQEIEDNDYNLNIARYVNN 494

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            A      L+  HQ       K  +       + +  
Sbjct: 495 TAVEEEIDLAANHQVLMDLDAKIKVATAKHNVFLKEL 531


>gi|237798537|ref|ZP_04586998.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021390|gb|EGI01447.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 540

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 113/585 (19%), Positives = 205/585 (35%), Gaps = 97/585 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           M +       L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MNDTN--RKQLGQTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEIAAKKELGNDY 58

Query: 60  LAF-------------------GGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNN 99
                                            ++     Y        +++ +     N
Sbjct: 59  PELPTDVLVKKGAATPLQVWYQENKADIPAFEKQMRRKVHYVIEPAHLWNSIANMARTQN 118

Query: 100 LE---------SYI--ASFSDNAKAIFEDFDF-SSTIAR--LEKAGLLYKICKNFSGIEL 145
            E          YI   SF    + +F + +  S  + R  +++   L  I +  +   L
Sbjct: 119 GELLSTLQAGFKYIETESFESTFQGLFSEINLGSDKLGRTYVDRNAKLCTIIQKIAE-GL 177

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           +  +     + + YE+LI +F +   + A +F TP+ +  + +A++              
Sbjct: 178 NEFSTDIDALGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSQEPKTGPKKR 237

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           + ++ D  CG+G  L +    V           +   +GQE    T+ +    ML+  ++
Sbjct: 238 LESVLDFACGSGSLLLNVRKRV-------GPHGVGKIYGQEKNITTYNLARMNMLLHGVK 290

Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                D    I  G TLS D              F   ++NPPF  +W   +   +    
Sbjct: 291 -----DTEFEIYHGDTLSNDWDILRELNPAKKPAFDAIVANPPFSYRWNPTEAMAD---- 341

Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                RF   G+   S     FL+H  + L+      G  AI+L    LF   A   E  
Sbjct: 342 ---DVRFKNHGVAPKSAADFAFLLHGFHFLKDE----GVMAIILPHGVLFRSGA---EER 391

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR  LL++  I+ ++ LP++LF+ T I   + +L   K       V  INA + +     
Sbjct: 392 IRTKLLKDGHIDTVIGLPSNLFYSTGIPVCILVLKKCKKP---DDVLFINAAEHFAK--- 445

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMSFILDKTGL 495
            GK++  + ++   +I+  Y +RE             GY RR+++    +  + L+ +  
Sbjct: 446 -GKRQNQLTEEHIAKIISTYQTRE----------PEPGYARRVEMEEIEKNGYNLNISRY 494

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA-ESFVKES 539
                  T    + +      D L  + +          +F+KE 
Sbjct: 495 -----ISTASTETEIDLQAVNDELAALEEATQEARDKHNAFLKEL 534


>gi|145637804|ref|ZP_01793453.1| transcription elongation factor NusA [Haemophilus influenzae
           PittHH]
 gi|145268997|gb|EDK08951.1| transcription elongation factor NusA [Haemophilus influenzae
           PittHH]
          Length = 572

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 36  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 95

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                    E+Y     + ++   +   A   F+         L   +   N  + +   
Sbjct: 96  LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQALQEVSIL-NTGAELPWG 153

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             FS  AK I + FD       +L+               L  +   FS       T   
Sbjct: 154 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 213

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 214 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 262

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 263 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 319

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 320 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 366

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 367 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKGIINA 420

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 421 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 475

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I +   + +    S   + +    +   +       F+L         E +  
Sbjct: 476 TADDIAKIANTLHAWQK---SDGYEDQAAFCKSATLEEIADNDFVLTPGRYVGTAEQEDD 532

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 533 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 565


>gi|255690134|ref|ZP_05413809.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260624418|gb|EEX47289.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 507

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 110/535 (20%), Positives = 207/535 (38%), Gaps = 62/535 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +   L +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDELKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGM 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES---YIASFSDN----------AK 112
            ++        G        +      + N  N L      I   +             +
Sbjct: 76  QVEDLPIRIPDGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF   D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +   
Sbjct: 130 GIFGPKDGWTNKAKMPD-NIITSLIEDFSKYTLSLKVCPADEMGQAYEYLVGKFADDAGN 188

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A++F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G+
Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGA 238

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
                  +   GQE+   T ++    + +  +E         +I    TL    F     
Sbjct: 239 E---WQSVQVFGQEVNGLTSSIARMNLYLNGIE-------DFSIACADTLENPAFLDGSH 288

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L+NPP+  K         ++  N + GR   G P        F+ H+   ++ 
Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFIQHILASMDE 343

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR AI+L    L        E  +RR L+E DL+++++++  +LFF + +   + 
Sbjct: 344 KT---GRCAILLPHGVLNRME----EEIMRRKLIEEDLVDSVISIGKNLFFNSPMEACIM 396

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRM 467
           + S++K  +R  +V  I ATDL    R  G+    + ++   +I+ +Y    N    S +
Sbjct: 397 LCSSKKPSDRIKQVLFIRATDLVE--RKNGE--SYLTEEHVEEIVSLYRGNTNVDNRSCI 452

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +D +T       +   L +     +  L   E    W++ S    S +  ++  +
Sbjct: 453 VDTKTISQNEYSISPKLYVKQTQTENILKFSEQIEQWQEYSCNIHSEYTKLINLL 507


>gi|145633239|ref|ZP_01788970.1| type I modification enzyme [Haemophilus influenzae 3655]
 gi|144986085|gb|EDJ92675.1| type I modification enzyme [Haemophilus influenzae 3655]
          Length = 571

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/572 (15%), Positives = 188/572 (32%), Gaps = 85/572 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 36  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 95

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNL--ES 102
                    E+Y     + ++   +   A   F+        TL      NT   L    
Sbjct: 96  LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQTLQEVSILNTGAELPWGG 154

Query: 103 YIASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP-- 151
            ++  +      F+            + R+         L  +   FS       T    
Sbjct: 155 KLSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGE 214

Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   ++ ++YE+ + RF     +    + TP+ +V L   +L              
Sbjct: 215 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 263

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR ++
Sbjct: 264 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 320

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D  +  +       + ++     K+  + ++NPPF                  +  R+ 
Sbjct: 321 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 367

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  D
Sbjct: 368 YGTPTKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 421

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP+ LF  T I   +W L+  K  +R+G+V  I+A  +           R   
Sbjct: 422 LVECMVALPSQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 476

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504
            +   +I D   + +    S   + +    +   +       F+L         E +   
Sbjct: 477 ANDISKIADTLHAWQT---SDGYEDQAAFCKSATLEDIAGYEFVLTPGRYVGTAEQEDDG 533

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +   Q+    + +   +        +  +
Sbjct: 534 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 565


>gi|187927550|ref|YP_001898037.1| type I restriction-modification system, M subunit [Ralstonia
           pickettii 12J]
 gi|187724440|gb|ACD25605.1| type I restriction-modification system, M subunit [Ralstonia
           pickettii 12J]
          Length = 537

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 119/569 (20%), Positives = 202/569 (35%), Gaps = 86/569 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLAFGGS-- 65
             L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y     S  
Sbjct: 7   QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGRDYPQQLDSSV 66

Query: 66  ------------NIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103
                       +   E   ++     Y     +    +       +           SY
Sbjct: 67  STPLQRWYESNLDDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDAVLLKTLQKGFSY 126

Query: 104 IA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I   SF+   + +F + + +S   +L     E+   L KI K  +   L   +     + 
Sbjct: 127 IETESFASTFRGLFSEINLAS--DKLGKTYAERNARLCKIIKEIAD-GLKQFSTDSDTLG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F +   + A +F TP+ +  + +A++              +  + D  CG+
Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHLDRVMDLACGS 243

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +  + + +             +GQE    T+ +    ML+  ++     D    I
Sbjct: 244 GSLLLNVRHRMKEAKGTIGK-----IYGQEKNITTYNLARMNMLLHGVK-----DSEFEI 293

Query: 277 QQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327
             G TL  +             +F   ++NPPF  +WE  +         GE  RF   G
Sbjct: 294 FHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEA-------LGEDVRFKNYG 346

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H    L+      G  AI+L    LF G A   E+ IR  LL++  I
Sbjct: 347 LAPKSAADFAFLLHGFQFLKQD----GVMAIILPHGVLFRGGA---EARIRTKLLKDGHI 399

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LFF T I   + +L   K       V  INA + +      GK++  I  +
Sbjct: 400 DTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GKRQNQILPE 452

Query: 448 QRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+D Y  R E  ++S          RR+ +    +  F L+ +             
Sbjct: 453 HIDKIIDTYQFRKEEARYS----------RRVGMEEIEKNDFNLNISRYVSTTEAEEEID 502

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           L+ +H        K  M       + +  
Sbjct: 503 LAAVHAELVSLDKKIKMATEQHNKFLKEL 531


>gi|325104014|ref|YP_004273668.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter
           saltans DSM 12145]
 gi|324972862|gb|ADY51846.1| Site-specific DNA-methyltransferase (adenine-specific) [Pedobacter
           saltans DSM 12145]
          Length = 519

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/561 (18%), Positives = 209/561 (37%), Gaps = 67/561 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   + ++    +W +A  L G  + +++  V+L    L+         R  + ++  
Sbjct: 1   MAKKVQTKST-EEILWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFIRRREELIKE-- 57

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKA 113
             G +          A   FY   E   + +     + ++          I   + + + 
Sbjct: 58  --GQNAFLEIPEFYQAENVFYLPVESRWTYIIENAKQEDITLKVDSALKTIERTNKSLEG 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
              D  FS     L+++     +    + I+   D   D  +  +YE+ + +F     +G
Sbjct: 116 ALPDNYFSRLG--LDQSK-FSALLDTINNIDTLRDEAQDI-VGRVYEYFLSKFAIAEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TP+ +V+L   ++                 +YDP+CG+GG    ++  +     H
Sbjct: 172 KGEFYTPKSIVNLIAEMI-----------EPYKGKIYDPSCGSGGMFVQSLKFIE---KH 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 +  +GQEL   T  +    + IR + ++     +       T + D     +  
Sbjct: 218 QGNKKDISIYGQELTNTTFKLAKMNLAIRGISANLGNKAA------DTFADDQHKELKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y ++NPPF             E++  +  R+ G  +P  S+ +  +++++ +KL    + 
Sbjct: 272 YIMANPPFNL------KDWRAENELTDDTRWTGYEVPPKSNANYAWILNMISKL----SQ 321

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G A  +L++  L  G     E +IR+ ++ENDL+EAIV LP  +F+ T+I+  LWIL+ 
Sbjct: 322 NGVAGFILANGALSGGGE---EYKIRKQIIENDLVEAIVILPRAMFYSTDISVTLWILNR 378

Query: 413 RKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            KTE              R+G+V  ++             K    +++    I   Y + 
Sbjct: 379 NKTERTVEVNDGIKNYRNRKGEVLFMDLRQKGEPFEK---KFIQFSENDIEYITGTYHNW 435

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +   F               V    +  + L  +                  QS   + L
Sbjct: 436 QQKDFESKYTNEAEYCYSANVEEIRKKDYSLVPSKYIEFVNRDENLDYDTQMQSLQTE-L 494

Query: 520 KPMMQQIYPYGWAESFVKESI 540
           K + QQ        + V +S+
Sbjct: 495 KDLFQQEEALKQEVANVFKSL 515


>gi|294616002|ref|ZP_06695828.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1636]
 gi|291591136|gb|EFF22819.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1636]
          Length = 530

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 102/544 (18%), Positives = 211/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            ++Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEHVVLLADESLDEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  +   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +++        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVDVL--EHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|197302014|ref|ZP_03167077.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC
           29176]
 gi|197298962|gb|EDY33499.1| hypothetical protein RUMLAC_00744 [Ruminococcus lactaris ATCC
           29176]
          Length = 532

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 111/563 (19%), Positives = 204/563 (36%), Gaps = 87/563 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           M E   ++  L + +W  A+ L       ++   +L     + L  +             
Sbjct: 1   MAEI-ENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLLYDEK 59

Query: 50  -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIA 105
             T     E Y          E   +++    Y       Y+     + N   N E    
Sbjct: 60  PATLKEALEAYKEALEDESAEELKDQLSEECHYVMEPELTYTYFADAARNNSFNREQLQK 119

Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            F+           +F D D  S        +++  +  + K     +L        ++ 
Sbjct: 120 GFNNIEQSDPIFADLFTDIDLYSNRLGAGDQKQSDTVASLIKEIDKADLLNSDAE--ILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP+ V  + T + +   +           ++YDP  G+
Sbjct: 178 NAYEYLIGQFASETGKKAGEFYTPQAVSKILTKIAISGQED------KKGLSVYDPCMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +          P  +  +GQE    T+ +    M +  +        ++++
Sbjct: 232 GSLLLNAKKY-------ASAPEYIKYYGQEQNTSTYNLARMNMFLHGI-----VAENQHL 279

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  TG+   F+  L NPP+  KW      ++ E  +         L   S  
Sbjct: 280 RNGDTLDGDWPTGEETDFNMVLMNPPYSAKWSAAAGFLQDERFSDYGV-----LAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ LP
Sbjct: 335 DYAFLLHGLYHLK----NNGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIGLP 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L   +       V  I+A+  +    N+GKK+  + D+   ++L 
Sbjct: 388 ANLFYNTSIPTCIIVLKKHRDGR---DVLFIDASKKF----NKGKKQNEMTDEHIDEVLA 440

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +Y  R+                   V +    S++     + + + ++   +     +  
Sbjct: 441 LYSDRK------------------TVEK---ESYLASFEDIEKNDFNLNIPRYVDNFEKE 479

Query: 515 WLDILKPMMQQIYPYGWAESFVK 537
               +  ++Q +         VK
Sbjct: 480 EDVDINTLLQDMKKTDDELEQVK 502


>gi|291551220|emb|CBL27482.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus torques L2-14]
          Length = 523

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/554 (17%), Positives = 206/554 (37%), Gaps = 70/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +    G          
Sbjct: 17  LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH----GEKYADMKPFY 72

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E     +     ++++          I   +   K         +  +RL
Sbjct: 73  TQENVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 128

Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  +    + I    D   + ++  +YE+ + +F     +G  +F TP+ +V+L
Sbjct: 129 HIDTAKLASLLDEINRINT--DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 186

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L   D             LYDP CG+GG    ++  V     + K    +  +GQE
Sbjct: 187 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T  +    + IR + ++     +      +T + D     +  + ++NPPF     
Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADFIMANPPFN---- 282

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     E++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 283 --QKQWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SRNGVAGFLLANGAL 336

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
            +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K           
Sbjct: 337 SDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQNGKL 393

Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471
               +R  ++  ++   + +       K   + ++ R ++  +Y + +   +    +   
Sbjct: 394 KRYRDREDEILFMDLRQMGSPYEK---KYIELTEEDRAKVTSVYHNWQQEGYEETYENVP 450

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y            F L  +                  +S   ++ + ++Q+      
Sbjct: 451 EFCYSA-SFEEVKEKGFTLVPSRYIEFVNRDENIDFDTKMKSLQGELKELLVQEEKSKSD 509

Query: 532 AESFVKESIKSNEA 545
             +  KE     E 
Sbjct: 510 LLAVFKELGYEIEL 523


>gi|315639285|ref|ZP_07894447.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315480611|gb|EFU71253.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 535

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 120/511 (23%), Positives = 201/511 (39%), Gaps = 82/511 (16%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVR----- 56
                +L + IWK A  L G+    DF   +L     R +   L      +  +      
Sbjct: 9   QAQRDALHSTIWKVANKLRGNVDGWDFKMYVLGMLFYRFISENLAAYINAKQGISPATMQ 68

Query: 57  --------EKYLAFGGSNIDL-----ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRN 98
                     Y      +ID      E+ +   G+  Y  S+   + L S     TN   
Sbjct: 69  TGGGGDNPNAYENLSDKDIDENEKSREAIIDAKGFFIY-PSQLFCNVLKSHAQDTTNLNQ 127

Query: 99  NLESYIASFSDNA---------KAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIEL 145
            L +  A    +          K +F D D +S+       L++   LY++ +  + ++L
Sbjct: 128 TLSNVFAQIEASTIGTQSETKFKGLFSDIDVNSSNKLGETLLKRNEKLYQVMQEIATLDL 187

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           H          + YE+L+R +  +  +   +F TP++V +L   L+     ++ K     
Sbjct: 188 HYSDNAIDTFGDAYEYLMRMYADKAGKSGGEFFTPQEVSYLLARLVSYGKQSVNK----- 242

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP CG+G  L      +                GQE+ P ++ +C   ML+  + 
Sbjct: 243 ---VYDPACGSGSLLLQFAKVLGIDNIKQG------FFGQEINPTSYNLCRINMLLHDI- 292

Query: 266 SDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  + +I  G TL +      + F   +SNPP+  KW  D D      K     RF
Sbjct: 293 ----GFENFDIALGDTLLEPKHADDEPFDAIVSNPPYPTKWIGDDDP-----KLINDPRF 343

Query: 325 GPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            P   L   S   + F MH+ + L       G  AIV     L+ G     E +IR++L+
Sbjct: 344 APAGVLAPKSYADLAFTMHMLSWLSPS----GTCAIVEFPGVLYRGGK---EKQIRKYLI 396

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           + + I+ I+ LP +LFF TNIAT + +L   K          I+A++ +T I     K+ 
Sbjct: 397 DQNFIDTIIQLPENLFFGTNIATSIIVLKKNKQSVAT---LFIDASEQFTKIT----KKN 449

Query: 443 IINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           I+       I++ Y  RE+ + FSR++    
Sbjct: 450 ILESTHINTIVEAYAKREDREHFSRLVSLEE 480


>gi|37679000|ref|NP_933609.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37197742|dbj|BAC93580.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 546

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 120/578 (20%), Positives = 208/578 (35%), Gaps = 89/578 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTQ--EQLNKLGKTLWDIADTLRGAMNADDFRDYMLSFLFLRYLSDNFEAAAKKELGKDY 58

Query: 60  LAFGGSNIDLESF---------VKVAGYSFYNT-----------------SEYSLSTLGS 93
           L      +                    SF+ T                 S   ++ +  
Sbjct: 59  LDLPKDVLRDLKMSNPLEVWYDENPDDISFFETQMRRKLHYIIKPEHLWSSIAEMARVQD 118

Query: 94  TNTRNNLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143
                 LE    YI   SF+ + + +F + + +S   +L     ++   L  I +  S  
Sbjct: 119 DELLKTLEEGFKYIENESFNSSFQGLFSEINLNS--EKLGKKPSDRNAKLCTIIQKVSEG 176

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     ++ + YE+LI  F +   + A +F TP+ +  + + ++            
Sbjct: 177 IAQFS-TDTDILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKK 235

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +  + D  CG+G  L +   H+   G           +GQE    T+ +    ML+  
Sbjct: 236 NKLNRVLDFACGSGSLLLNVRKHITVAGGSIGK-----IYGQEKNITTYNLARMNMLLHG 290

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           ++     D   +I  G TL  D             +F   ++NPPF  +WE D       
Sbjct: 291 VK-----DTEFDIFHGDTLFNDWELLNEKNPAKKLKFDAVVANPPFSYRWESD------R 339

Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            +  E  RF   G+   S     FL+H  + L       G  AI+L    LF   A   E
Sbjct: 340 AEFKEDFRFKNHGIAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRSGA---E 392

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             IR  LL++  I+ ++ LP++LFF T I   + +L   K       V  INA+D     
Sbjct: 393 QRIRSKLLKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKY---DDVLFINASDEENFE 449

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +  GK++  +  +  ++I+D Y  R+  +            RR+ +    +  F L+ + 
Sbjct: 450 K--GKRQNKLRPEDIQKIVDTYRFRDQEER---------YSRRVSMEEIEKNDFNLNISR 498

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
                       L   H+   +DI K + + +  +   
Sbjct: 499 YVSTAKAEAKVDLQAEHKK-LVDIEKNINEALDKHNSF 535


>gi|213971212|ref|ZP_03399330.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv.
           tomato T1]
 gi|301382340|ref|ZP_07230758.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302062746|ref|ZP_07254287.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|213924081|gb|EEB57658.1| type I site-specific deoxyribonuclease [Pseudomonas syringae pv.
           tomato T1]
          Length = 540

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 118/561 (21%), Positives = 206/561 (36%), Gaps = 85/561 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           M +   +   L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MNDT--NRKQLGQTLWAIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEIAAKKELGNDY 58

Query: 60  LA------------------FGGSNIDLESFVKVA-GYSFYNTSEYSL----STLGSTNT 96
                               +  +  D+ +F K       Y      L    + +  T +
Sbjct: 59  PQLPADVRLKTDGPTPLQIWYEENEADIPAFEKQMRRKVHYVIEPAHLWNSIANMARTQS 118

Query: 97  RNNLE------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143
              L        YI   SF    + +F + +  S   +L     ++   L  I +  +  
Sbjct: 119 GELLTTLQAGFKYIETESFESTFQGLFSEINLGS--EKLGRTYVDRNAKLCTIIQKIAE- 175

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L+  +     + + YE+LI +F +   + A +F TP+ +  + +A++            
Sbjct: 176 GLNEFSSDIDSLGDAYEYLIGQFAAGSGKKAGEFYTPQQISDILSAIVTLDSHEPKTGPK 235

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             + ++ D  CG+G  L +    V           I   +GQE    T+ +    ML+  
Sbjct: 236 RRLESVLDFACGSGSLLLNVRKRV-------GPHGIGKIYGQEKNITTYNLARMNMLLHG 288

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           ++     D    I  G TLS D              F   ++NPPF  +W+  +   E  
Sbjct: 289 VK-----DTEFEIYHGDTLSNDWDVLRQLNPAKKPTFDAIVANPPFSYRWDPTEAMAE-- 341

Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                  RF   GL   S     FL+H  + L+      G  AI+L    LF   A   E
Sbjct: 342 -----DVRFKNHGLAPKSAADFAFLLHGFHFLKDD----GVMAIILPHGVLFRSGA---E 389

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             IR  LL++  I+ ++ LP++LF+ T I   + IL   K   +   V  INA D +T  
Sbjct: 390 ERIRTKLLKDGHIDTVIGLPSNLFYSTGIPVCILILKKCK---QTDDVLFINAADHFTK- 445

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
              GK++  + D+   +I+  Y +RE   +++R ++          +     +S +  +T
Sbjct: 446 ---GKRQNQLTDEHIAKIIKAYQTREPEPRYARRVEMEEIEKNAYNLNISRYISMVSAET 502

Query: 494 GLARLEADITWRKLSPLHQSF 514
            +     +     L    Q+ 
Sbjct: 503 EIELQAVNDELTTLEETIQAA 523


>gi|262377417|ref|ZP_06070640.1| type I restriction-modification system, M subunit [Acinetobacter
           lwoffii SH145]
 gi|262307647|gb|EEY88787.1| type I restriction-modification system, M subunit [Acinetobacter
           lwoffii SH145]
          Length = 576

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/524 (17%), Positives = 167/524 (31%), Gaps = 105/524 (20%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L + +WK A+ L       ++  ++L    L+ +  A +  +S ++E +      NI
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68

Query: 68  -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTNTR--------- 97
                              D    +        F+        ++ +   +         
Sbjct: 69  YYMPRDQYDSEEEYQQAIADELEILDYYQEKNVFWVPKAARWLSIRNAAAQAIGSIIWQD 128

Query: 98  ---------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                          +N    I   +   K I                  L  +   FS 
Sbjct: 129 EQGQDVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183

Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
                              ++ ++YE+ + +F     +    + TP+ +V L   +L   
Sbjct: 184 TSFTNPEYNGEQLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249
                   P   R +YDP  G+GGF   +   +            +    +  +GQE  P
Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNP 292

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +    M IR ++ +  +      +   +   D     R  + ++NPPF  K     
Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADSFLDDQHPDLRADFVMANPPFNIK----- 341

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                        R+  G P   + +  ++ H+ + L      G  A ++ + S   N  
Sbjct: 342 --DWWHASLESDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420
               E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R G
Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           K   I+A +L           R   D    +I     + + G+ 
Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITQTLHAWQQGEN 494


>gi|159038425|ref|YP_001537678.1| N-6 DNA methylase [Salinispora arenicola CNS-205]
 gi|157917260|gb|ABV98687.1| N-6 DNA methylase [Salinispora arenicola CNS-205]
          Length = 810

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 101/477 (21%), Positives = 187/477 (39%), Gaps = 76/477 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L   +W++ ++L G    + +   +L    ++ +                    ++  
Sbjct: 6   SDLYGALWRSCDELRGGMDASQYKDYVLTLLFVKYVTD----------------KATSDR 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFEDFDFSSTIA 125
                  AG SF       +          +  + I      A     + +  DF+    
Sbjct: 50  TSLVDVPAGGSF-----DDMVACKGDREIGDKINRIVGRLAEANGLGRVVDLADFNDE-D 103

Query: 126 RLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           RL K       L K+    + ++   +    D ++ + YE+L+R F  E  +    F TP
Sbjct: 104 RLGKGKEMQDRLSKLVTIIADLDFRDNRAEGDDLLGDAYEYLMRHFARESGKSKGQFYTP 163

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   L+                T+YDPTCG+G  L              + P  L
Sbjct: 164 AEVSRVLARLVGIG------PGTRQDHTVYDPTCGSGSLL---------LKVAAEAPRGL 208

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE +  T A+    M++   E         +I++G T++   F      + F + +
Sbjct: 209 TIYGQEKDNATWALARMNMILHGYE-------DCDIRKGDTIASPQFTQGAQLQTFDFAV 261

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF    +   + +E E      GRF  G P   +G   FL+H+   L+      G+A
Sbjct: 262 ANPPFSV--KSWSNGLEHE-----YGRFDVGRPPDKNGDFAFLLHILTSLKS----NGKA 310

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+++    LF G A +G   IR+ LL    I  ++ LP +LF+ T I   + +L     +
Sbjct: 311 AVIMPHGVLFRGNAEAG---IRKELLRRGYIMGVIGLPANLFYGTGIPACMVVLDKEHAQ 367

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           E R  + +I+A+  +     +G K R +      +I+D++  R   + +SR++    
Sbjct: 368 E-RTSIFMIDASQGFI---KDGSKNR-LRSQDIHRIVDVFTRRTEVERYSRVVPLYE 419


>gi|229105723|ref|ZP_04236352.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-28]
 gi|228677612|gb|EEL31860.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-28]
          Length = 497

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/528 (19%), Positives = 204/528 (38%), Gaps = 80/528 (15%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDLESF 72
            A DL G     +F   IL     R L   +E     + ++       A+       +  
Sbjct: 1   MANDLRGQMDAYEFKDYILGLIFYRYLSEKVEHRAEQLLKEDNITFSQAWTDKEYKEDLA 60

Query: 73  VKVAGYSFYNTSE----YSLSTLGSTNTRNNLE--------SYIASFS------DNAKAI 114
             + G   Y         +  +        N +          I + +      ++ + +
Sbjct: 61  EYLVGELGYVIEPQYLFSNFVSEIEKGVNGNFDVELLQNGVKAIEASTMGTDSQEDFQNL 120

Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           F+D D +S  ++L      ++ L+ K+  N + I    D V   ++ + YE++I +F + 
Sbjct: 121 FDDMDLTS--SKLGRTVESRSKLIAKVIINIAEIPFLQDDVEIDILGDAYEYMISQFAAN 178

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP+ V  +   ++              IR++YD TCG+G  L         
Sbjct: 179 AGKKAGEFYTPQQVSKVLAKIVTAGKSE--------IRSVYDGTCGSGSLLLRVGKEAK- 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                    +   +GQE    T+ +    ML+  +          +I+   TL +     
Sbjct: 230 ---------VYKYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNADTLEEPQHLD 275

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLE 347
           +RF   ++NPP+  KW  D    + E       RF     L   S     F+ H  ++L 
Sbjct: 276 ERFEAIVANPPYSAKWSADDKFKDDE-------RFSAYSKLAPKSKADFAFIQHFIHQL- 327

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATY 406
              +G G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++F+ T+I T 
Sbjct: 328 ---DGNGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFYGTSIPTC 381

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +   +K  +    V  I+A++ +      GK +  ++D+   +I+  Y++RE   K+S
Sbjct: 382 ILVF--KKCRKHDEHVVFIDASNEFEK----GKNQNHLSDEHVEKIVSTYLNRETIDKYS 435

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                         +  P    ++        ++ +   ++L  +   
Sbjct: 436 YAATLDEIKENDYNLNIP---RYVDTFEEEEPVDLEAVAKRLQEIDAE 480


>gi|319939011|ref|ZP_08013375.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
 gi|319812061|gb|EFW08327.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
          Length = 531

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 199/509 (39%), Gaps = 78/509 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSA 54
                + N IW  A +L G+   +++   IL F   R L             L+      
Sbjct: 2   SQTQEITNKIWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEQYLINNDILDLEDGKT 61

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIASFS 108
           + + Y          +    +A    Y  +   +  +L      +    ++ ++    F+
Sbjct: 62  INQLYKEQATGEELADYLEDIASSLGYAIAPEDTWLSLLTRIENNEVIPSDYQTIFDHFN 121

Query: 109 DNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            NA          + +F D +   T    +  ++A  L +I K    I    D     ++
Sbjct: 122 ANAELNKEAVQDFRGVFNDINLGYTRLGSSTNDRAKSLNRIVKLVDDINYKSDDG-RDIL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             IYE LI++F +   +   +F TP +V  +   ++ D  +           ++YDPT G
Sbjct: 181 GFIYEELIKKFAASAGKKGGEFYTPHEVSQILAKIVTDKVE-----QTERTFSVYDPTMG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L    N +     + + P  +   GQEL   T+ +    +++  +        + N
Sbjct: 236 SGSLLLTVGNEL----PNGQKPGAIKYFGQELNTTTYNLARMNLMMHGV-----TYSNMN 286

Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +    TL  D   G         + F   ++NPP+  KW+   + +       +  RF  
Sbjct: 287 LSNADTLESDWPDGPDEKGVDHPRSFDAVVANPPYSAKWDNADNKL-------KDPRFSE 339

Query: 327 --GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S     F++H    L    N  G  AIVL    LF G A   E +IR+ L+E 
Sbjct: 340 YGKLAPASKADFAFILHSVYHL----NDTGTMAIVLPHGVLFRGAA---ELKIRQTLVEK 392

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++ ++ LP +LF+ T+I T + +    K       +  I+A+  +      GK +  +
Sbjct: 393 NYLDTVIGLPANLFYGTSIPTTVLVFRKNKENR---DILFIDASKDFDK----GKNQNTL 445

Query: 445 NDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           ND    +I++ + +R++  K++R++ +  
Sbjct: 446 NDTHIEKIIETFRNRQDVNKYARLVSFEE 474


>gi|251788561|ref|YP_003003282.1| type I restriction-modification system, M subunit [Dickeya zeae
           Ech1591]
 gi|247537182|gb|ACT05803.1| type I restriction-modification system, M subunit [Dickeya zeae
           Ech1591]
          Length = 535

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 121/557 (21%), Positives = 209/557 (37%), Gaps = 90/557 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------- 51
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTEFEK--QKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58

Query: 52  -RSAVREK-------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-- 101
            +    E+       Y        + E  ++   + +    +Y  +++       +++  
Sbjct: 59  PKQKEGERQPPLTLWYEQNEQDVPEFEKLMRRKVH-YVIEPQYLWTSIAEMARTQHVKLL 117

Query: 102 -------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147
                   YI   SF+   + +F + + +S   +L     E+   L KI K  +   L  
Sbjct: 118 NTLQAGFKYIEEESFASVFRGLFSEINLAS--EKLGKTYGERNDRLCKIIKEIAD-GLKQ 174

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            +     + + YE+LI +F +   + A +F TP+ +  + +A++              + 
Sbjct: 175 FSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQRSHLD 234

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +++D  CG+G  L +    +   G           +GQE    T+ +    ML+  ++  
Sbjct: 235 SVFDFACGSGSLLLNIRKRMGQHGIGK-------IYGQEKNITTYNLARMNMLLHGVK-- 285

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
              D   +I  G TL  D    +        +F   ++NPPF  +WE  +          
Sbjct: 286 ---DSEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPTET-------LA 335

Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           +  RF   GL   S     FL+H  + L+      G  AI+L    LF   A   E+ IR
Sbjct: 336 DDVRFKNHGLAPKSAADFAFLLHGFHFLKED----GVMAIILPHGVLFRSGA---EARIR 388

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             LL++  I+ ++ LP +LFF T I   + +L   K       V  INA + +      G
Sbjct: 389 TKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFDK----G 441

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           K++  I+ D  ++I+D Y     GK            RR+ +    +  F L+ +     
Sbjct: 442 KRQNQISSDHIKEIIDTY-KFRKGKTRYA--------RRVSMEEIEKNDFNLNISRYVST 492

Query: 499 EADITWRKLSPLHQSFW 515
                  KLS +H    
Sbjct: 493 AEAEEEIKLSSVHAELV 509


>gi|220930107|ref|YP_002507016.1| type I restriction-modification system, M subunit [Clostridium
           cellulolyticum H10]
 gi|220000435|gb|ACL77036.1| type I restriction-modification system, M subunit [Clostridium
           cellulolyticum H10]
          Length = 525

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 107/561 (19%), Positives = 211/561 (37%), Gaps = 69/561 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVREK---- 58
            + L N +W +A+ L G    +++   +L     + L         E     V E     
Sbjct: 1   MSDLNNQLWASADILRGKMDASEYKNYLLGLIFYKYLSDQELRAVYEEEHGKVSEYPNRH 60

Query: 59  ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDN 110
                    +   + D++  +      ++   +Y   TL   +      +     +F + 
Sbjct: 61  DQLAGLLEWYKEDSADVKDII-SKKLGYFIVPDYLFYTLRKKADEYELQISDLQNAFIEL 119

Query: 111 AK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
            +       +F+D D +ST       ++   + ++ K    I L        V+ + YE+
Sbjct: 120 GRQGNHFTGLFDDIDLTSTKLGANAQQRNITITEVIKALDEIYLF--GHDGDVIGDAYEY 177

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F +   + A +F TP+ V  + + ++    + +          +YDP  G+G  + 
Sbjct: 178 LIGQFAAGAGKKAGEFYTPQTVSKIISEIVSIGQEEV------APFHIYDPAMGSGSLML 231

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +    V +       P  +  HGQEL   T+ +    +++  +E          ++ G T
Sbjct: 232 NIRQFVKN-------PWKVHYHGQELNTTTYNLARMNLILHNVE-----QSQMRLRNGDT 279

Query: 282 LSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L +D  + +   F+  + NPP+   W  D   +          R+G  L   S     FL
Sbjct: 280 LDEDWPSDEPYLFNAVVMNPPYSANWSADDKFLSDPR----FERYG-KLAPKSKADFSFL 334

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L    N  G   IVL    LF G     E  IR+ LLE   I+A++ LP ++F+
Sbjct: 335 LHGFYHL----NENGTMGIVLPHGVLFRGA---SEGVIRKTLLEMGAIDAVIGLPANIFY 387

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + I+   + +     V  I+A+  +   +N    +  +  +  ++I+D Y  R
Sbjct: 388 GTSIPTTVLIMKKNRGKR---DVLFIDASKDFEKQKN----QNNLRKEDIQKIVDTYKKR 440

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E+  K++ + DY         +  P  +    ++  +  +        L+   +   ++ 
Sbjct: 441 ESIHKYAHLADYDEIVRNEYNLNIPRYVDTFEEEVQIDIVALSNEMVDLNLQIKQKEMEF 500

Query: 519 LKPMMQQIYPYGWAESFVKES 539
           L  +       G  E      
Sbjct: 501 LGLLDDLAITDGTRELIEATK 521


>gi|38423944|dbj|BAD02152.1| slr6095 [Synechocystis sp. PCC 6803]
          Length = 477

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 101/442 (22%), Positives = 170/442 (38%), Gaps = 57/442 (12%)

Query: 38  FTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-- 93
              L+R     E     +                 +    +   F+       +T+    
Sbjct: 1   MLFLKRASDVFEQQYQQIIRDNLAKGRSEEEAKQRAERASSYQDFFVPERARWATIRDEL 60

Query: 94  -TNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPD 148
             N  N L   +A+  +       +    DF+  + +   +   L ++  +F+   L  +
Sbjct: 61  HDNVGNGLNKALAALEESNVALSGVLGHIDFNRKVGKTTLSDTKLRELIFHFNKYRLLNE 120

Query: 149 TVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 +    YE+LI  F     +   +F TPRDVV L   L+           P    
Sbjct: 121 DFVFPDLLGAAYEYLIAEFADSAGKKGGEFYTPRDVVQLMVRLV----------KPAAGM 170

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++YDP  G+GG L  A  ++ +CG   +    L   GQ+      A+C   ML+  ++  
Sbjct: 171 SIYDPCVGSGGMLIQAKQYIEECGGDSR---NLSLCGQDNNGGVWAICKINMLLHGIK-- 225

Query: 268 PRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                   I+   TL           +RF   LSNPPF + +EK               R
Sbjct: 226 -----DARIENEDTLQNPRHIVDGELERFDRVLSNPPFSQNYEKTN--------LEFKNR 272

Query: 324 FGPGLPKIS--DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           F  G    S     ++F  H+ + L++    GG  A V+    LF G     E +IR+ L
Sbjct: 273 FNHGWCPESGKKADLMFAQHMLSVLKV----GGIVATVMPHGVLFRGG---DEQKIRKSL 325

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGK 439
           +E D IEAI+ LP +LF+ T I   + ++     K  ERRGKV  INA   + +    G+
Sbjct: 326 IEKDQIEAIIGLPPNLFYGTGIPACILVMRRAGEKLPERRGKVLFINADAEFYA----GR 381

Query: 440 KRRIINDDQRRQILDIYVSREN 461
            +  +  +   +I++ + +  +
Sbjct: 382 AQNYLKPEHIEKIVNAFEAFVD 403


>gi|150020305|ref|YP_001305659.1| type I restriction-modification system, M subunit [Thermosipho
           melanesiensis BI429]
 gi|149792826|gb|ABR30274.1| type I restriction-modification system, M subunit [Thermosipho
           melanesiensis BI429]
          Length = 799

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 120/584 (20%), Positives = 224/584 (38%), Gaps = 92/584 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L   +W+ A +L G    + +   +L    ++            V ++Y    
Sbjct: 1   MAMRKTQLYTHLWEAANELRGGMDASQYKNYVLTILFVKY-----------VTDRYKNDP 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDNAKAIFED 117
            ++             F    + S   L     + ++   I       +  +  K + + 
Sbjct: 50  YAD-------------FVVPEDGSFDALVEAKGKPDIGERINKVLARLAEENELKGVIDL 96

Query: 118 FDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171
            DF  +       +K   L K+   F   EL+        D ++ ++YE+ +++F +E  
Sbjct: 97  VDFDDSTKLGNGKDKVDKLTKLIAIFENPELNFSKNRADGDDILGDVYEYFMKKFATEAG 156

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP +V  +   ++        + +    +T YDPTCG+G  L    +      
Sbjct: 157 KSKGQFYTPAEVSRIMAKII------GIENANSPDQTAYDPTCGSGSLLLKVAD------ 204

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
              + P  +  +GQE++ +   +    M++              I+QG+TLS   F    
Sbjct: 205 ---EAPVEISLYGQEIDIDVANLARMNMILHG-------KPDAVIEQGNTLSDPKFKNKD 254

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K F + ++NPPF +  +   + V+ E  N    RF  G+P   +G   FL+H    L
Sbjct: 255 GSLKTFDFAVANPPFSQ--KNWMNGVDPE--NDSFHRFDDGIPPAKNGDYAFLLHFIKSL 310

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +    G GR AI+L    LF G A   E+EIRR L++   I+ I+ LP +LF+ T I   
Sbjct: 311 KP---GKGRGAIILPHGVLFRGNA---EAEIRRNLVKKGYIKGIIGLPPNLFYGTGIPAI 364

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + ++       R+G + +I+A+  +   R +G K R + +    +I+  +V+ E      
Sbjct: 365 IMVIDKENAHARKG-IFMIDASKGF---RKDGPKNR-LRERDIHKIVTTFVNFEEIP--- 416

Query: 467 MLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                  GY R + +    +  + L+   + R         +  +H      I K  + +
Sbjct: 417 -------GYSRMVSLEEIEKNDYNLN---IPRYVDSTEEEDIQDIHAHLHGGIPKRDIDK 466

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
           I      +   KE  +  E    ++K     +  FI      D 
Sbjct: 467 IEELKIFKGLKKELFEEKEDCYYRLKVGIELLQEFIEIHEEIDK 510


>gi|148827015|ref|YP_001291768.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittGG]
 gi|148718257|gb|ABQ99384.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae PittGG]
          Length = 558

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 23  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 82

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                    E+Y     + ++   +   A   F+         L   +   N  + +   
Sbjct: 83  LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPVSARWQALQEVSIL-NTGAELPWG 140

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             FS  AK I + FD       +L+               L  +   FS       T   
Sbjct: 141 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNG 200

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 201 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 249

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 250 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 306

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 307 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 353

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  ++ H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 354 AYGTPPKGNANYAWIQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 407

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DLIE +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 408 DLIECMVALPGQLFTNTQIPACIWFLNCNK--KRKGEVLFIDARQIGYMKDRV---LRDF 462

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I +   + +    S   + +    +   +       F+L         E +  
Sbjct: 463 TADDIAKIANTLHAWQT---SDGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 519

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 520 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 552


>gi|261492504|ref|ZP_05989058.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261496910|ref|ZP_05993278.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307434|gb|EEY08769.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311867|gb|EEY13016.1| type I site-specific deoxyribonuclease, methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 552

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 102/538 (18%), Positives = 185/538 (34%), Gaps = 83/538 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L   +W  A+ L  +    ++  ++L F  L+ +  +    ++ ++           
Sbjct: 19  LNDLDQTLWTAADKLRKNLDAANYKHIVLGFIFLKYISDSFTDFQAKLKTQLTTPESELY 78

Query: 57  ---EKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLSTLGST---NTRNNL--ESYI 104
                +     S I  E   +     A   F+   +     + S    N  + L      
Sbjct: 79  LDPALFDEQEFSQILAEELEQRDYYAAENIFWVPEQARWDNIKSLSKLNLGDELPWGDKF 138

Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151
              S      FE            + R+        +L  +   FS              
Sbjct: 139 KGVSRLIDDAFEAIERENPKLKGVLQRIAGFGVPDEMLTGLIDLFSRTNFTQPMHNGEPV 198

Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L                
Sbjct: 199 HLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML-----------KPYSG 247

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF   A   +     +      +  +GQE  P T  + V  M IR +  D
Sbjct: 248 RIYDPAMGSGGFFVQADRFIQAHQGNRNA---ISVYGQESNPNTRKLAVMNMAIRGIPFD 304

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                    +   TL   L   K+    ++NPPF +K    +             R+  G
Sbjct: 305 FGD------KPEDTLLNPLHIDKKMDVVMANPPFNQKAWWSESLAN-------DPRWAYG 351

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+   L       G+ A++L++  +      SGE +IR+ +++ DL+
Sbjct: 352 TPPQGNANFAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGDIRKNIVQADLV 405

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ALP  LF  T I   +WI++  K    + +V  INAT +           R    D
Sbjct: 406 EAMIALPNQLFTNTQIPACIWIINKAKAR--KKEVLFINATQIGYMKDRV---LRDFTAD 460

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL--ARLEADIT 503
              +I D Y + +        +   F Y    +    +  F+L       A +E D  
Sbjct: 461 DIAKISDTYHNWQKQD--GYENIPAFCYCA-TLDEIAKNDFVLTAGRYVGAAVEEDDG 515


>gi|312902060|ref|ZP_07761321.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0470]
 gi|311290842|gb|EFQ69398.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0470]
          Length = 529

 Score =  290 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 198/484 (40%), Gaps = 68/484 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  ++                S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLEDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPYQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTYNLAKMNLILHGVEAEDM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   +       V  I+A+  +T     GK +  +  +   +I+  Y+ R
Sbjct: 391 GTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLATEHIDKIVSTYIER 443

Query: 460 ENGK 463
           ++ +
Sbjct: 444 QDVE 447


>gi|293603337|ref|ZP_06685765.1| type I restriction-modification system DNA-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818247|gb|EFF77300.1| type I restriction-modification system DNA-methyltransferase
           [Achromobacter piechaudii ATCC 43553]
          Length = 535

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 119/569 (20%), Positives = 206/569 (36%), Gaps = 88/569 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY-------- 59
             L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y        
Sbjct: 7   QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKRELGQDYPIQIDNSV 66

Query: 60  ----LAFGGSNIDL--ESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103
                 +  SN+D   E   ++     Y     Y    +       + E         SY
Sbjct: 67  STPLQRWYESNLDDVPEFEKQMRRKVHYVIEPQYLWGNIAELARTQDGELLKTLQRGLSY 126

Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I   SF+   + +F + + +S   +L     E+   L KI    +   L   +     + 
Sbjct: 127 IETESFASTFRGLFSEINLAS--DKLGKTYTERNARLCKIIMEIAD-GLSQFSTDSDTLG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F +   + A +F TP+ +  + +A++              +  + D  CG+
Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQPISTILSAIVTLDGQEPATGQRSHLDNVLDFACGS 243

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +  + +           I   HGQE    T+ +    ML+  ++     D   +I
Sbjct: 244 GSLLLNVRHRM-------GPHGIGKIHGQEKNITTYNLSRMNMLLHGVK-----DSEFDI 291

Query: 277 QQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327
             G TL  +    +        +F   ++NPPF  +W       +      E  RF   G
Sbjct: 292 FHGDTLLNEWDALRETNPAKMPKFDAVVANPPFSYRW-------DSSASLAEDMRFKNYG 344

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL +  I
Sbjct: 345 LAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---EARIRTKLLRDGHI 397

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LFF T I   + +L   K       V  INA + +      GK++  +  +
Sbjct: 398 DTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GKRQNQLLPE 450

Query: 448 QRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+D Y  R+   ++S          RR+ +    +  F L+ +             
Sbjct: 451 HIDKIIDTYQFRKVEPRYS----------RRVGMEEIEKNDFNLNISRYVSTAEAEEEID 500

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           L+ +H +      K    +     +    
Sbjct: 501 LAAVHANLLATEQKIAEAKKRHNQYLAEL 529


>gi|331654119|ref|ZP_08355119.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
 gi|331047501|gb|EGI19578.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
          Length = 535

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 116/556 (20%), Positives = 199/556 (35%), Gaps = 88/556 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTEFDK--QKLGKTLWNIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGVDY 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYS----------------LSTLGSTNTRNNLE--- 101
                             +  + SE+                  +++       +++   
Sbjct: 59  PKQKEGKRQPPLTLWYEQNEQDISEFEKLMRRKVHYVIEPQYLWTSIAEMARTQHVKLLN 118

Query: 102 ------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
                  YI   SF+   + +F + + +S   +L     E+   L KI K  +       
Sbjct: 119 TLQAGFKYIEEESFASVFRGLFSEINLAS--EKLGKTYGERNDRLCKIIKEIADGLKQFS 176

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           T     + + YE+LI +F +   + A +F TP+ +  + +A++              I +
Sbjct: 177 TNS-DTLGDAYEYLIGQFAAGSGKKAGEFYTPQHISDILSAIVTLDSQEPATGQRSHIDS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           ++D  CG+G  L +    +   G           +GQE    T+ +    ML+  ++   
Sbjct: 236 VFDFACGSGSLLLNIRKRMGQHGIGK-------IYGQEKNITTYNLARMNMLLHGVK--- 285

Query: 269 RRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D   +I  G TL  D    +        +F   ++NPPF  +WE  +          +
Sbjct: 286 --DSEFDIFHGDTLLNDWDMLRETNPSRMPKFDAVVANPPFSYRWEPSET-------LAD 336

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF       E+ IR 
Sbjct: 337 DVRFKNYGLAPKSAADFAFLLHGFHFLKED----GVMAIILPHGVLFRSGT---EARIRT 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ I+ LP +LFF T I   + +L   K       +  INA + +      GK
Sbjct: 390 KLLKDGHIDTIIGLPANLFFSTGIPVCILVLKKCKKP---DDILFINAAEHFDK----GK 442

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           ++  I+ D  ++I+D Y  R+               RR+ +    +  F L+ +      
Sbjct: 443 RQNQISSDHIKKIIDAYKFRKEEPRYA---------RRVSMEEIEKNDFNLNISRYVSTA 493

Query: 500 ADITWRKLSPLHQSFW 515
                  L+ +H    
Sbjct: 494 EPEEEINLTAVHAELV 509


>gi|146329144|ref|YP_001209148.1| type I restriction-modification system, M subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232614|gb|ABQ13592.1| type I restriction-modification system, M subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 826

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 96/482 (19%), Positives = 185/482 (38%), Gaps = 68/482 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYISDKY--------------- 45

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSS 122
           G + D        G SF +       +         +    I + +  A++ F DF+  +
Sbjct: 46  GDSDDFPPVTIPPGASFKDMIALKGKSDIGDKINTQIIQPLIDANTRLARSDFPDFNDPN 105

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
              +L +       +  +   F   EL+        D ++ + YE+L+R F S+  +   
Sbjct: 106 ---KLGEGQAMVDRISNLIGIFQKPELNFSKNRAENDDILGDAYEYLMRHFASQSGKSKG 162

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T YDPTCG+G  L              +
Sbjct: 163 QFYTPSEVSRIMAKIVGISPANTV-----ASTTAYDPTCGSGSLL---------LKVAAE 208

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
               +   GQE++  T  +    M++           + NI QG+TL+   F      + 
Sbjct: 209 AGKPITLEGQEMDVTTAGLARMNMILH-------DFPTANILQGNTLTSPKFKDGELLRT 261

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPPF  K          +       RF  G P    G   +L+H+   ++    
Sbjct: 262 YDYVVANPPFSDKTWSTGLTPANDA----YQRFVWGEPPKKQGDYAYLLHIIRSMKST-- 315

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+ A +L    LF G A   E+ IR  L+++ +++ I+ LP++LF+ T I   + +L 
Sbjct: 316 --GKGACILPHGVLFRGNA---EAVIREKLVQSGILKGIIGLPSNLFYGTGIPACILVLD 370

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDY 470
                ER+G + +I+A+  +     +G K R + +    +I+D +       ++SRM+  
Sbjct: 371 KETASERKG-IFMIDASKGFI---KDGAKNR-LREQDIHKIVDTFTKLTELPRYSRMVPL 425

Query: 471 RT 472
             
Sbjct: 426 TE 427


>gi|293556630|ref|ZP_06675196.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1039]
 gi|291601216|gb|EFF31502.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1039]
          Length = 531

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 103/544 (18%), Positives = 210/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYNTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  +   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+         ++
Sbjct: 444 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|226954358|ref|ZP_03824822.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244]
 gi|226834894|gb|EEH67277.1| N-6 DNA methylase [Acinetobacter sp. ATCC 27244]
          Length = 576

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 96/522 (18%), Positives = 167/522 (31%), Gaps = 105/522 (20%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L + +WK A+ L       ++  ++L    L+ +  A +  ++ ++E +      NI
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVADAFDERQAELKELFAQADDHNI 68

Query: 68  -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTN----------- 95
                              D    +        F+       +TL +T            
Sbjct: 69  YYMPRDQYDTEEEYQQAIADELEIIDYYQEKNVFWVPKAARWTTLQNTAALAIGSIIWQD 128

Query: 96  -------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                          +N    I   +   K I                  L  +   FS 
Sbjct: 129 EHGQDVKLRSISWLVDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183

Query: 143 IEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
                              ++ ++YE+ + +F     +    + TP+ +V L   +L   
Sbjct: 184 TSFTKPEYNGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249
                   P   R +YDP  G+GGF   +   +            +    +  +GQE  P
Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKHYKASEQKKHISIYGQESNP 292

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +    M IR ++ +  +      +   T   D     R  + ++NPPF  K     
Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFNIK----- 341

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                        R+  G P   + +  ++ H+ + L      G  A ++ + S   N  
Sbjct: 342 --DWWHASLESDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420
               E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R G
Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           K   I+A +L           R   D    +I     + + G
Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITHTLHAWQQG 492


>gi|68250154|ref|YP_249266.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 86-028NP]
 gi|68058353|gb|AAX88606.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 86-028NP]
          Length = 556

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/572 (16%), Positives = 187/572 (32%), Gaps = 85/572 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L   +W +A+ L       ++  ++L    L+ +       +  ++ +         
Sbjct: 21  LNDLDEKLWSSADKLRQQLDAANYKHIVLGLIFLKYISDNFTHQQEKIQAELSDAENPLY 80

Query: 68  DLESFVK-------------------VAGYSFYNTSEYSLSTLGSTNTRNNLESYI---A 105
              +F                      A   F+  +      L   +   N  + +    
Sbjct: 81  LDRTFFDTEEEYQEALTAELENRDYYTADNVFWVPASARWQALQEVSIL-NTGAELPWGG 139

Query: 106 SFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP-- 151
            FS  AK I + FD       +L+               L  +   FS       T    
Sbjct: 140 KFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNGE 199

Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   ++ ++YE+ + RF     +    + TP+ +V L   +L              
Sbjct: 200 PVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 248

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR ++
Sbjct: 249 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 305

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D  +  +       + ++     K+  + ++NPPF                  +  R+ 
Sbjct: 306 YDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWA 352

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  D
Sbjct: 353 YGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 406

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R   
Sbjct: 407 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 461

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504
            D   +I D   + +    S   + +    +   +       F+L         E +   
Sbjct: 462 ADDIAKIADTLHTWQK---SDGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDDG 518

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +   Q+    + +   +        +  +
Sbjct: 519 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 550


>gi|315641380|ref|ZP_07896455.1| type I restriction-modification system DNA-methyltransferase
           [Enterococcus italicus DSM 15952]
 gi|315482873|gb|EFU73394.1| type I restriction-modification system DNA-methyltransferase
           [Enterococcus italicus DSM 15952]
          Length = 535

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 106/489 (21%), Positives = 192/489 (39%), Gaps = 74/489 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTRSAVR 56
             ++ +L   +W +A+ L       ++   +L     + L           LE + S + 
Sbjct: 4   NQNSKNLYQALWSSADILRSKMDANEYKNYLLGIVFYKYLSDRMLVFAVDLLEESASDLE 63

Query: 57  EKY----LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIASF-- 107
           E       A     +  +    +     Y      + + L       +  LE     F  
Sbjct: 64  EAQVIFTKAMDDGEVKDDLLYALKDEFSYLIEPSLTFTALVHDVYRGKFQLEDLAQGFRN 123

Query: 108 ----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
               ++  + +FED D  S   +L     ++   +  + K  + ++L        ++ + 
Sbjct: 124 IEQSNELFENLFEDVDLYSK--KLGATPQKQNQTIANVMKELADLDL---AHQGDILGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F SE  + A +F TP+ +  L T + +D  +           ++YDPT G+G 
Sbjct: 179 YEYLISQFASESGKKAGEFYTPQPISELMTRIAIDGKED------QKGFSVYDPTMGSGS 232

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +                 +   GQEL   T  +    M++  ++S      +++++ 
Sbjct: 233 LLLNVRRF-------SNEKGFINYFGQELNTSTFNLARMNMILHGVDS-----ANQHLRN 280

Query: 279 GSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           G TL  D  T +   F   L NPP+  KW  +K  ++         RF     L   S  
Sbjct: 281 GDTLDGDWPTEEPTNFDAVLMNPPYSAKWSGEKGFLD-------DPRFSMYGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AI+L    LF G     E +IR  LL N  I+ ++ LP
Sbjct: 334 DFAFLLHGYYHLKES----GVMAIILPHGVLFRGN---SEGKIREILLRNGAIDTVIGLP 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++FF T+I T + IL   +  +    V  I+A++ +T     GK + ++  +    I+D
Sbjct: 387 ANIFFSTSIPTTVIILKKNRPNQ---DVLFIDASNGFTK----GKNQNVLEPNHIEAIID 439

Query: 455 IYVSRENGK 463
            Y  R + +
Sbjct: 440 TYQKRVSIE 448


>gi|290473111|ref|YP_003465972.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           bovienii SS-2004]
 gi|289172405|emb|CBJ79172.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           bovienii SS-2004]
          Length = 819

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 101/475 (21%), Positives = 181/475 (38%), Gaps = 70/475 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKNELYSSLWASCDELRGGMDASQYKDYVLTMLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDN--AKAIFEDFDF 120
             N      V   G  F       +  L    +  + +   I   +D      +F+  +F
Sbjct: 45  YKNDRYGIIVIPEGAGF-----DDMVALKGKKDIGDEINKIIRKLADENGLGTMFDVANF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D +M + YE+L+R F +E  +   
Sbjct: 100 NDE-EKLGKGKEMIDRLSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++   D            ++YDPTCG+G  L  A +         +
Sbjct: 159 QFYTPAEVSLVLAKIIGINDK------TPRDASVYDPTCGSGSLLLKASD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            P  L   GQE++  T ++    M++   ESD       N         D    K F + 
Sbjct: 204 APRGLSIFGQEMDVTTSSLAKMNMILHGHESDVHSIQQGNTIASPVFKDDKGQLKTFDFA 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K            +  E GRFG G+P   +G   FL+H+   L+      G+
Sbjct: 264 VANPPFSNKN----WTSGINPREDEFGRFGWGIPPEKNGDYAFLLHILKSLKST----GK 315

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   ES IR  L++   I  I+ LP +LF+ T I   + +L  +  
Sbjct: 316 GAVILPHGVLFRGNA---ESLIRENLIKQGYIRGIIGLPANLFYGTGIPACIIVLDKQDA 372

Query: 416 EERR----------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                           + +I+A+  +     +G K R +      +I++++  ++
Sbjct: 373 ISADFDAEGKVTRGRDIFMIDASRDFI---KDGNKNR-LRSQDIYKIVEVFTQQK 423


>gi|332655470|ref|ZP_08421207.1| ribosomal protein L11 [Ruminococcaceae bacterium D16]
 gi|332515605|gb|EGJ45218.1| ribosomal protein L11 [Ruminococcaceae bacterium D16]
          Length = 524

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 104/554 (18%), Positives = 211/554 (38%), Gaps = 70/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      E  R A+ EKY   G   +D  +F  
Sbjct: 18  LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKAISEKY---GEKFVDNVAFY- 73

Query: 75  VAGYSFY--NTSEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127
                F+    S +S         +    +++    I   +   K         +  +RL
Sbjct: 74  TKDNVFFLPEISRWSFIMENAKQDDIALKIDTALYTIEKANPALKGALP----DNYYSRL 129

Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  +      I        + ++  +YE+ + +F     +G  +F TP+ +V+L
Sbjct: 130 HIDTAKLASLLDEIDKINTGDK--ENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 187

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++   D             LYDP CG+GG    +M  V     + K    +  +GQE
Sbjct: 188 IAEMIEPYDG-----------ILYDPCCGSGGMFVQSMKFVEAHHGNKKK---VSIYGQE 233

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T+ +C   + IR + ++     +      +T + D     +  Y ++NPPF     
Sbjct: 234 YTNTTYKLCKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 283

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     +++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 284 --QKEWRGDNELIDDPRWDGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 337

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
            +      E +IRR L+EN+L+EAI+ LP +LF+ T+I+  LWIL+  K           
Sbjct: 338 SDDGT---ELKIRRQLIENNLVEAIIILPRNLFYTTDISVTLWILNKNKKARVVEENGEV 394

Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471
                R  ++  ++   + +       K   + ++ R ++  +Y + +   +        
Sbjct: 395 KRFRNREREILFMDLRQMGSPYEK---KYIELTEEDRAKVRSVYHAWQQEGYEETYQNVP 451

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y            F L  +                  ++   ++ + ++ +      
Sbjct: 452 EFCYSA-SFDEVAEKGFTLVPSRYIEFVNRDENIDFDTKMKTLQSELRELLVAEEKSKAD 510

Query: 532 AESFVKESIKSNEA 545
             +  KE     E 
Sbjct: 511 LLTVFKELGYEIEL 524


>gi|283778919|ref|YP_003369674.1| type I restriction-modification system, M subunit [Pirellula
           staleyi DSM 6068]
 gi|283437372|gb|ADB15814.1| type I restriction-modification system, M subunit [Pirellula
           staleyi DSM 6068]
          Length = 835

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 108/556 (19%), Positives = 202/556 (36%), Gaps = 84/556 (15%)

Query: 19  AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
            ++L G    + +   +L    L+ +                    +N+         G 
Sbjct: 51  CDELRGGMDASQYKDYVLVLLFLKYISD----------------KYANVPYAPIEVPKGS 94

Query: 79  SFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSSTIARL----EKAGLL 133
           SF       +  L  T +  +++   I +    A  + +  DF+ +  +L    EK   L
Sbjct: 95  SFK-----DMVALKGTKDIGDDINKKIIAPIAQANRLSDMPDFNDS-TKLGSGKEKVDRL 148

Query: 134 YKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             +   F    L         D ++ + YE+L+R F +E  +    F TP +V  +   +
Sbjct: 149 TNLIAIFENKSLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQFYTPAEVSRIIAQI 208

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +                T+YDPTCG+G  L    +         +    +  +GQE +  
Sbjct: 209 IGIK-----TAKTTGSTTVYDPTCGSGSLLLKVSD---------EAQTPVTLYGQEKDAA 254

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWE 306
           T  +     ++  + +         I+QG+TLS   F      K F Y ++NPPF  K  
Sbjct: 255 TSGLARMNTILHNMPTAL-------IEQGNTLSNPRFVDGSSLKTFDYVVANPPFSDK-- 305

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             + +   +  +    RF  G+P    G   +L+H+   L+    G    A +L    LF
Sbjct: 306 --RWSTGLDPASDPHARFTLGIPPAKQGDYAYLLHIIRSLKSTGQG----ACILPHGVLF 359

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E+EIR+ LL    I+ I+ LP +LF+ T I   + ++   K   RR  + +I+
Sbjct: 360 RGNA---EAEIRKNLLRKGYIKGIIGLPANLFYGTGIPACIVVIDK-KEANRRQAIFMID 415

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485
           A+  +     +G K R +      +I+D +  +    K+S          R + +    +
Sbjct: 416 ASSGYM---KDGPKNR-LRARDIHKIVDTFNQQLEVPKYS----------RLVTIEEIEK 461

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             F L+       +     + +    +      ++        +       K   K N  
Sbjct: 462 NDFNLNLPRYIDSQTPEDIQNIDGHLKGGIP--VEDTTSLEPYWKVCPGLQKALFKKNRT 519

Query: 546 KTLKVKASKSFIVAFI 561
             + ++   + I   I
Sbjct: 520 GFVDLRVEPAEIKTTI 535


>gi|154496690|ref|ZP_02035386.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC
           29799]
 gi|150273942|gb|EDN01042.1| hypothetical protein BACCAP_00982 [Bacteroides capillosus ATCC
           29799]
          Length = 524

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 103/557 (18%), Positives = 198/557 (35%), Gaps = 71/557 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG-G 64
            +   + N + + A+ L       ++   +LP   ++ L  + E     ++++Y      
Sbjct: 2   TTKKDIENALMRGADTLRDTIDAANYKDYVLPIMFVKYLSDSYEDALDELKKEYSGIRLE 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS--S 122
                  F      SF +  +   S          +    A  +     +    D++  +
Sbjct: 62  RQKRYLPFTIAEECSFQSLYDQRFSDKIGQLINAAMRKIEADNNQQLAGVLNTVDYNSEN 121

Query: 123 TIARLE-KAGLLYKICKNFSGIELHPDTVP-------DRVMSNIYEHLIRRFGSEVSEGA 174
            +  L+ K  +L  + ++F  + L P  +          V+ + YE++I +F S   + A
Sbjct: 122 ALGTLDHKKAILRDLLEDFESLSLRPSEIEVKAGQVPADVIGDAYEYMIGQFASMAGKKA 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  V  +   ++                 +YDPTCG+G  L  A           
Sbjct: 182 GSFYTPAAVSEIMARIV----------DVQPGERVYDPTCGSGSLLIKAAK--------K 223

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291
           +    +  +GQE+   + A+    M I  +           I  G TL+  LF       
Sbjct: 224 QNSKEVSIYGQEVNGSSVAMAKMNMYIHEI-------RDAKIAWGDTLANPLFLDSDGNL 276

Query: 292 --FHYCLSNPPFGKKWE------------KDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             F   ++N PF K               K K   + E    +  RF  G+P  S G   
Sbjct: 277 LLFDAIVANMPFSKDKWASGFNPGGESSGKGKKEFKMEASLDKFHRFDWGVPPASKGDWA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H+   L    +  GR A V     LF G A   E  IR+ ++E +L++A++ LP +L
Sbjct: 337 FLLHMIASL----SVNGRIAAVAPHGVLFRGAA---EGRIRQKVIEENLLDAVIGLPENL 389

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---RRIINDDQRRQILD 454
           F+ T+I   + +    +T      +  I+A+    +      K   +  +  +    I++
Sbjct: 390 FYGTSIPACILVFKKNRT---NTDILFIDASKKDENGNPRYIKASNQNELAPEHIDAIVE 446

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y +R +  KF+ +            +  P    ++        ++       +  L ++
Sbjct: 447 AYQTRTDKDKFAHVATLEEIQENEYNLNIP---RYVDTFEEEEPIDIQKVQANIDRL-KA 502

Query: 514 FWLDILKPMMQQIYPYG 530
              +    M   +   G
Sbjct: 503 EIAEAETQMDAYLKELG 519


>gi|261210086|ref|ZP_05924384.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|297580647|ref|ZP_06942573.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
 gi|260840851|gb|EEX67393.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC341]
 gi|297535063|gb|EFH73898.1| type I restriction-modification system methyltransferase subunit
           [Vibrio cholerae RC385]
          Length = 546

 Score =  289 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 122/578 (21%), Positives = 208/578 (35%), Gaps = 89/578 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+       L   +W  A+ L G     DF   +L F  LR L    E   +  + + Y
Sbjct: 1   MTQ--EQLNKLGKTLWDIADTLRGAMNADDFRDYMLSFLFLRYLSDNFEAAAKKELGKDY 58

Query: 60  LAFGGSNIDLESF---------VKVAGYSFYNT-----------------SEYSLSTLGS 93
           L      +                    SF+ T                 S   ++ +  
Sbjct: 59  LDLPKDVLRDLKMSNPLEVWYDENPDDISFFETQMRRKLHYIIKPEHLWSSIAEMARVQD 118

Query: 94  TNTRNNLES---YI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143
                 LE    YI   SF+ + + +F + + +S   +L     ++   L  I +  S  
Sbjct: 119 DELLKTLEEGFKYIENESFNSSFQGLFSEINLNS--EKLGKKPSDRNAKLCTIIQKVSEG 176

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     ++ + YE+LI  F +   + A +F TP+ +  + + ++            
Sbjct: 177 IAQFS-TDTDILGDAYEYLIGEFAANGGKKAGEFYTPQPISTILSEIVTLDSQEPKMGKK 235

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +  + D TCG+G  L +   H+   G           +GQE    T+ +    ML+  
Sbjct: 236 KNLNRVLDFTCGSGSLLLNVRKHITSAGGSIGK-----IYGQEKNITTYNLARMNMLLHG 290

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           ++     D    I  G TL  D             +F   ++NPPF  +WE D       
Sbjct: 291 VK-----DTEFEIFHGDTLLNDWDLLNEKNPAKKLKFDAVVANPPFSYRWESD------R 339

Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            +  E  RF   G+   S     FL+H  + L       G  AI+L    LF G     E
Sbjct: 340 AEFKEDFRFKNHGIAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGG---SE 392

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             IR  LL++  I+ ++ LP++LFF T I   + +L   K       V  INA+D     
Sbjct: 393 QRIRSKLLKDGHIDTVIGLPSNLFFSTGIPVCILVLKKCKKY---DDVLFINASDEENFE 449

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +  GK++  +  D  ++I+D Y  R+  +            RR+ +    +  F L+ + 
Sbjct: 450 K--GKRQNKLRPDDIQKIVDTYRFRDQEER---------YSRRVSMEEIEKNDFNLNISR 498

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
                       L   H+   +DI K + + +  +   
Sbjct: 499 YVSTAKAEAKVDLQAEHKK-LVDIEKDINEALDKHNSF 535


>gi|303241302|ref|ZP_07327807.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302591141|gb|EFL60884.1| type I restriction-modification system, M subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 802

 Score =  289 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 109/627 (17%), Positives = 228/627 (36%), Gaps = 96/627 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKSELYSSLWSSCDELRGGMDASQYKDYVLVMLFVKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122
            + +         G +F       +  L  T N  +++   I         + +  DF+ 
Sbjct: 45  YAGMPYAPVTIPEGSTFK-----DMVALKGTANIGDDINKKIIGPIAEKNQLSDMPDFND 99

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
            + +L         L  +   F   EL         D ++ + YE+L+R F +E  +   
Sbjct: 100 -VNKLGSGKEMVDRLTNLIAIFEHKELDFSKNRADGDDILGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F +P +V  + + ++      +  ++     T+YDPTCG+G  L    +         +
Sbjct: 159 QFYSPAEVSRVISKIIGINTSNVNAQT-----TVYDPTCGSGSLLLKVSD---------E 204

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----- 290
               +  +GQE +  T  +    M +         +    I+QG+TL+  +F  +     
Sbjct: 205 AGIKISLYGQEKDSATTGLARMNMYLH-------DNPLHEIKQGNTLANPMFKDENGKLK 257

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELP 349
            F Y ++NPPF  K    +       +  E  RF   G+P   +G   +L+H+   L+  
Sbjct: 258 TFDYVVANPPFSDK----RWGNGVNTEKDEYERFKDYGVPPSKNGDFAYLLHIIRSLKSS 313

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+ A +L    LF G A   E+EIR+ ++    I+ I+ LP +LF+ T I   + +
Sbjct: 314 K---GKGACILPHGVLFRGNA---EAEIRKNIIRKGYIKGIIGLPANLFYGTGIPACIIV 367

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRML 468
           L       R+G + +I+A+  +     +G K R +      +I+D++ +  E  K+S+M+
Sbjct: 368 LDKENAANRKG-IFMIDASKGFM---KDGNKNR-LRSMDIHKIVDVFNNQYEIDKYSKMV 422

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ-SFWLDILKPMMQQIY 527
            +         +  P  +     +         +    +  +     +  +   +   ++
Sbjct: 423 TFSEIENNEYNLNIPRYIDSQEGEDVQDIEAHLLGGIPMYDIEALKDYWKVCPNLKGALF 482

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF-----GRKDPRADPVTD-VNG-- 579
                + ++   +  +  K  K     +   A+ +         KD   + +     G  
Sbjct: 483 SKSSRDRYLDLKVAKDYIK--KTIFEHTEFKAYSDKMEAHFKEWKDKYIEILKGMKKGLV 540

Query: 580 --EWIPDTNLTEYENVPYLESIQDYFV 604
             + I D            ESI  ++ 
Sbjct: 541 PKKVIAD----------LSESILAHYK 557


>gi|150398838|ref|YP_001322605.1| type I restriction-modification system, M subunit [Methanococcus
           vannielii SB]
 gi|150011541|gb|ABR53993.1| type I restriction-modification system, M subunit [Methanococcus
           vannielii SB]
          Length = 520

 Score =  289 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 119/549 (21%), Positives = 217/549 (39%), Gaps = 71/549 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA- 54
           M       A L   IW+ A +L G     DF + +L     R +   L     E  R A 
Sbjct: 1   MISKEQERAELHRTIWQIANNLRGSVDGWDFKQYVLGMLFYRFISENLTNYINEEERKAG 60

Query: 55  ---------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101
                      ++        +  + F  +    FYN ++   +   L  T      N+E
Sbjct: 61  NKDFDYSKLSDKEAEFGRKDTVIEKGFYILPSELFYNVTKNARNDPNLNETLSKVFKNIE 120

Query: 102 SYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
           S    F   D+ K +F+D D +S   +L     ++   L  + +  + ++L         
Sbjct: 121 SSAKGFESEDDLKGLFDDLDVNS--NKLGSTVEQRNKQLVNLLEAINELKLGNYSENTID 178

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + +   +   +F TP++V  L   + +     + K        +YDPT
Sbjct: 179 AFGDAYEYLMTMYAANAGKSGGEFYTPQEVSELLAKITIVGKKDVNK--------VYDPT 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +               +GQE+   T+ +C   M +  +  +      
Sbjct: 231 CGSGSLLLKFAKVLGKENVRQG------FYGQEINLTTYNLCRINMFLHDINYN-----H 279

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G+TL+       + F   +SNPP+  KWE D + +          RF P   L  
Sbjct: 280 FDIAHGNTLTDPKHFDDEPFDAIVSNPPYSIKWEGDSNPI-----LINDPRFSPAGVLAP 334

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+   L       G AAIV     L+ G A   E +IR++L++N+ ++ +
Sbjct: 335 KSKADLAFTMHMLAWLSTS----GTAAIVEFPGVLYRGGA---EQKIRKYLIDNNYVDCV 387

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP+DLFF T IAT + +L   K      K   I+A+  +      G K   ++D+   
Sbjct: 388 IQLPSDLFFGTTIATCIIVLKKSK---IDNKTLFIDASKEFV---RAGNK-NKLSDENIN 440

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +ILD +++R + ++ S+++D          +     ++    +  +   E +    ++  
Sbjct: 441 KILDAFLNRNDIEYFSKLVDNTDISKNDYNIAVSSYVTVEDTREIIDIKELNKKISEIVK 500

Query: 510 LHQSFWLDI 518
                 ++I
Sbjct: 501 RQNELRIEI 509


>gi|168698315|ref|ZP_02730592.1| type I restriction-modification system specificity subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 521

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 107/509 (21%), Positives = 185/509 (36%), Gaps = 71/509 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + + L G    + +   +L    ++ +                   
Sbjct: 1   MALKKSELYSSLWSSCDALRGGMDASQYKDYVLFMLFIKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            ++          G  F +                N+   I    +N    F D DF+  
Sbjct: 45  YADNPFPPIKIPEGARFKDMVALKGKPDIGDQINKNVLGPIGK--ENGID-FGDLDFNDA 101

Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAED 176
            A+L         L  +   F    L         D ++ + YE+L+R F +E  +    
Sbjct: 102 -AKLGSGKEMVDRLTTLVAIFEDKRLDFSKNRADGDDILGDAYEYLMRHFATESGKSKGQ 160

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  +   +L   D            T+YDPTCG+G  L    +         + 
Sbjct: 161 FYTPAEVSRIIAQVLGIRDA-----KTSANTTVYDPTCGSGSLLLKVAD---------EA 206

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
                 +GQE +  T  +    M++         +    I QG+TL+   F      K F
Sbjct: 207 RTKPTLYGQEKDAATSGLARMNMILH-------DNAGALIVQGNTLTDPKFKDGDALKTF 259

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
            Y ++NPPF  K    + +   +       RF   G P    G   +L+H+   L+    
Sbjct: 260 DYVVANPPFSDK----RWSTGLDPLKDTYERFQHFGAPPAKQGDYAYLLHIVRSLKST-- 313

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR A +L    LF G A   E+EIR+ L+    I+ I+ LP +LF+ T I   + ++ 
Sbjct: 314 --GRGACILPHGVLFRGNA---EAEIRKKLVAKRYIKGIIGLPANLFYGTGIPACIIVID 368

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLDY 470
            +    R G V +I+A+  +     +G K R +      +I+D +   R   KFSR++ +
Sbjct: 369 KQDAAARAG-VFMIDASAGFM---KDGPKNR-LRARDIHKIVDAFTQGRTIPKFSRLVPF 423

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLE 499
                    +  P  +    +   L  +E
Sbjct: 424 EEIEKNDFNLNLPRYIDSQ-EAEDLQNIE 451


>gi|254786393|ref|YP_003073822.1| type I restriction-modification system, M subunit [Teredinibacter
           turnerae T7901]
 gi|237686117|gb|ACR13381.1| type I restriction-modification system, M subunit [Teredinibacter
           turnerae T7901]
          Length = 535

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 118/576 (20%), Positives = 209/576 (36%), Gaps = 88/576 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           MT+       L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTK--EQLNQLGKTLWDIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEQAAKKELGRDY 58

Query: 50  --PTRSAVREK----YLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLGSTNTRN 98
             P +   R      Y        D E  +++  +     +F  +S   ++    T+  +
Sbjct: 59  PKPEKDDRRAPLAIWYQNNPADIADFEKQMRLKTHYVIEPAFLWSSVAEMARTQHTDLLD 118

Query: 99  NLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
            L     YI   SF+   + +F + +  S   +L     ++   L  I +  +   +   
Sbjct: 119 TLWKGFKYIEEKSFNSTFQGLFSEINLHS--EKLGKKPADRNAKLCAIIQKIAE-GISQF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +    ++ + YE+LI +F +   + A +F TP+ +  + + ++              I+ 
Sbjct: 176 STDTDILGDAYEYLIGQFAAGSGKKAGEFYTPQPISQILSEIVTLDSQEPATGKKKKIKQ 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +    +           I   +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRKQL-------GPHGIGKIYGQEKNITTYNLARMNMLLHGVK--- 285

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL  D             +F   ++NPPF  +W   +         GE
Sbjct: 286 --DTEFEIHHGDTLENDWDILNEMNPAKKMQFDAVVANPPFSLRWSPTEA-------LGE 336

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L       G  AI+L    LF G A   E  IR 
Sbjct: 337 DFRFKNYGLAPKSAADFAFLLHGFHFLSDD----GVMAIILPHGVLFRGGA---EERIRT 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ ++ LP +LFF T I   + +L   K   +   V  INA + +      GK
Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKRCK---KSDDVLFINAAEHFEK----GK 442

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           ++  + D+   +I+D Y  R+  +            RR+ +    +  + L+ +      
Sbjct: 443 RQNYLEDEHIAKIIDCYQFRKEEERYA---------RRVPMDEIKKNDYNLNISRYVSTA 493

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
                  L+ +H S      +  +       + +  
Sbjct: 494 KPEEKIDLAKVHNSLVDLEGEIKLATKKHNKFLKEL 529


>gi|323340759|ref|ZP_08081011.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091882|gb|EFZ34502.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 556

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 108/511 (21%), Positives = 188/511 (36%), Gaps = 78/511 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-------------CALEPTR 52
            +A  + N IW  A +L G+   +++   IL F   R L                     
Sbjct: 2   STAEDIKNKIWAMANELRGNMDASEYRDYILGFMFYRFLSEHQLNWQSENEFPDLAGKKL 61

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTR-----NNLESYIAS 106
             + ++Y      +   E    +A    Y     ++  ++           +  +     
Sbjct: 62  EKINQRYAKEAIGDDLTEYLKDIADALGYAIEPKFTWISIVERVNDRSFAPSEFQEMFDK 121

Query: 107 FSDNAK----------AIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVP 151
           F++NAK           +F D +  +  +RL       A  L  I    + IE   D   
Sbjct: 122 FANNAKLNPNAVNDFTGVFSDINLGN--SRLGDSTNVRAKTLLDIVNLVNEIEYK-DEAG 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ +IYE+LI  F     +   +F TP  V  +   ++    D   +        +YD
Sbjct: 179 HDILGDIYEYLIAEFAGNAGKKGGEFFTPHQVSLVLAKIIAANMDPEIEHPE-----VYD 233

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             CG+G  L    + +       +    +  +GQEL    + +    +++  ++      
Sbjct: 234 FACGSGSLLLTVEDELQ--IPGSQKRRRVRYYGQELNTTNYNMARMNLMMHGVDYQMM-- 289

Query: 272 LSKNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              +++   TL  D   G           F   ++NPP+  +W+   + +       +  
Sbjct: 290 ---DLRNADTLENDWPDGVGNDNIDHPHFFDAVVANPPYSSRWDNSANKI-------KDA 339

Query: 323 RFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   GL   +     FL+H    L    N  G  AIVL    LF G A   E +IR+ L
Sbjct: 340 RFKDYGLAPKTKADYAFLLHGLYHL----NSRGTMAIVLPHGVLFRGNA---EGKIRKAL 392

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           LE + I+AI+ LP  LFF T I T + +L   KT +    V  I+A+      +   KK+
Sbjct: 393 LEKNQIDAIIGLPAGLFFSTGIPTIIMVLKKNKTNK---DVLFIDASGEDHYEK--IKKQ 447

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
             + ++    I+D Y  RE+      +    
Sbjct: 448 NFLREEDINLIIDTYKKREDVDKYAHVASID 478


>gi|153811904|ref|ZP_01964572.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174]
 gi|149832038|gb|EDM87123.1| hypothetical protein RUMOBE_02297 [Ruminococcus obeum ATCC 29174]
          Length = 523

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 98/554 (17%), Positives = 205/554 (37%), Gaps = 70/554 (12%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      E  R+ +   +    G          
Sbjct: 17  LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEECRNKIIATH----GEKYADMKPFY 72

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E     +     ++++          I   +   K         +  +RL
Sbjct: 73  TQENVFYLPEESRWKYIIENAKQDDIALKIDTALYTIEKNNPALKGALP----DNYYSRL 128

Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  +    + I    D   + ++  +YE+ + +F     +G  +F TP+ +V+L
Sbjct: 129 HIDTAKLASLLDEINRINT--DDKENDIIGRVYEYFLSKFALAEGKGKGEFYTPKCIVNL 186

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L   D             LYDP CG+GG    ++  V     + K    +  +GQE
Sbjct: 187 IAEMLEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T  +    + IR + ++     +      +T + D     +  + ++NPPF     
Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADFIMANPPFN---- 282

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     E++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 283 --QKQWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 336

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE--------- 416
            +      E +IR+ L+EN L+EAI+ LP +LF+ T+I+  LW+L+  K           
Sbjct: 337 SDDGT---ELKIRQQLIENHLVEAIIILPRNLFYTTDISVTLWVLNKNKKARVVEQNGKL 393

Query: 417 ----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-R 471
                R  ++  ++   + +       K   + ++ R ++  +Y + +   +    +   
Sbjct: 394 KRYRNREDEILFMDLRQMGSPYEK---KYIELTEEDRAKVTSVYHNWQQEGYEETYENVP 450

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            F Y            F L  +                  +S   ++ + ++Q+      
Sbjct: 451 EFCYSA-SFDEVKEKGFTLVPSRYIEFVNRDENIDFDTKMRSLQGELKELLVQEEKSKSD 509

Query: 532 AESFVKESIKSNEA 545
             +  KE     E 
Sbjct: 510 LLAVFKELGYEIEL 523


>gi|289423461|ref|ZP_06425263.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156095|gb|EFD04758.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 535

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 113/573 (19%), Positives = 208/573 (36%), Gaps = 87/573 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--- 60
                 S+ + +W  A +L G+   ++F   IL F   R L       +     +Y    
Sbjct: 1   MDNKVQSITSKLWAMANELRGNMDASEFKNYILAFMFYRYLS----EHQENYMVEYGIID 56

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTR-----NNLESY 103
                          +         +A    Y      +  +L +         ++ +  
Sbjct: 57  SEDGMSNNEVYKRDSAGDLDTFIKDIADELGYAIYPDDTWESLCNKIDEGKIVPSDYQKL 116

Query: 104 IASFSDNAK----------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
           + +F++NA+           +F D +     ++L      +A  L  I K    +E   +
Sbjct: 117 LDNFNNNARINERAEEDFSGVFNDINLGD--SKLGASATARARSLNNIVKLVDEVEYKGE 174

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              D  +  IYE+LI +F +   +   +F TP  V  +   ++        + +      
Sbjct: 175 DGKDI-LGEIYEYLIGQFAASAGKKGGEFYTPHQVSQILAKIVTTG-----RVASKKTFN 228

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           LYDPT G+G  L      V D          +  +GQEL   T+ +    +++  +E   
Sbjct: 229 LYDPTMGSGSLLLT----VRDELPGGDRVGAMDFYGQELNTTTYNLARMNLMMHGVEYKN 284

Query: 269 RRDLSKNIQQGSTLSKD---------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                  ++ G TL +D             K F   ++NPP+  KW+ ++  ++    NG
Sbjct: 285 MS-----LKNGDTLEEDWPIDTDKNGKMEPKWFDAVVANPPYSAKWDNNERKIKDPRFNG 339

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   L   S     F++H    L+      G  AIVL    LF G A   E  IR+
Sbjct: 340 Y-----GKLAPASKADFAFILHSVYHLKED----GTMAIVLPHGVLFRGAA---EGVIRK 387

Query: 380 WLLEND-LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            L+E D  ++A++ LP +LF+ T+I T + +    +T      V  I+A+  +      G
Sbjct: 388 TLIEKDNYLDAVIGLPANLFYGTSIPTTILVFKKDRTARGVSDVLFIDASSDFVK----G 443

Query: 439 KKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           K +  + D+   +I+  Y  R+   K+S +            +  P    ++        
Sbjct: 444 KNQNTLTDEFIDKIVSTYRYRKAIDKYSYVASLDEVKENDYNLNIP---RYVDTFEEEEP 500

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
           ++  I   KL          +   +M+Q+   G
Sbjct: 501 VDL-IAVSKLIEEDNKEIAKLESEIMEQLRILG 532


>gi|254172724|ref|ZP_04879399.1| type I restriction-modification enzyme, M subunit [Thermococcus sp.
           AM4]
 gi|214033653|gb|EEB74480.1| type I restriction-modification enzyme, M subunit [Thermococcus sp.
           AM4]
          Length = 523

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 118/541 (21%), Positives = 222/541 (41%), Gaps = 49/541 (9%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--LA 61
              +   L   + K A+ +        +   IL    L+RL    E       +K     
Sbjct: 17  KALTREELERVLKKAADLIRTRVD---YK-YILLLLFLKRLSDEWEKEFEEYVKKLMEEG 72

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASF---SDNAKAIF 115
                 +  +      Y+     EY    L   +      NL   +      + N + + 
Sbjct: 73  LDRKTAEELALQDKEAYTINYPPEYLWRKLREKDIENLPQNLSQALKKLAELNPNLRGVV 132

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           + FDF   +   + A +L ++ + FSG+ L        V+ + YE ++R F  + ++   
Sbjct: 133 DRFDFMEFMLHRDNAEILRQLFELFSGLNL--KNASPDVLGDAYEWILRYFAPQKAKE-G 189

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +  TPR+V+ L   +L           P     +YDP  G+GG L  A  +V +     +
Sbjct: 190 EVYTPREVIRLLVEIL----------KPKPGEEVYDPAMGSGGMLIGAYLYVKEKHGESE 239

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
              +   +GQE+ P T+A+    M++  ++       S  +  G TL +  F      KR
Sbjct: 240 AKKLF-LYGQEVNPTTYALAEMNMILHGIK-------SPKLAVGDTLLRPAFKEGNKLKR 291

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F+  ++NPP+ +    +    + E K     RF  G P  +     ++ H+   L    +
Sbjct: 292 FNVVIANPPWNQDGYGEATLKKAEFKEE---RFKYGYPPNNSADWAWIQHM---LASARD 345

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GR  IV+ +  LF G A   E +IR  +L++DL+EA++ LP  LF+ T     + I +
Sbjct: 346 EDGRVGIVIDNGALFRGGA---EKKIRAKVLKDDLVEAVILLPEKLFYNTGAPGAIMIFN 402

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
             K  ERRGKV  INA+  +       +K   + D   R+I+D +   E+ + F+R+++ 
Sbjct: 403 RNKPTERRGKVLFINASQEYEKHPEV-RKLNRLGDGHIRKIVDAFEKFEDVEGFARVVEL 461

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                    +   L + F +++     ++A+    K      +   + ++  ++++  +G
Sbjct: 462 DEIKENDHNLNVTLYV-FPMEEEEEIDVKAEWEELKRINEELAKVDEKIEGYLKELGYWG 520

Query: 531 W 531
            
Sbjct: 521 K 521


>gi|262383640|ref|ZP_06076776.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294538|gb|EEY82470.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 530

 Score =  289 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 193/499 (38%), Gaps = 69/499 (13%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M + + +      +   +WK  + L G  + +++  V+L    L+      E  R  +  
Sbjct: 1   MAKKSINKKDNLPMEEVLWKACDALRGSIEPSEYKHVVLSLIFLKYAGFHFEKRRQEIV- 59

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDN 110
                G  +         A   FY         L   + + N+ S        I   +  
Sbjct: 60  ---NDGLEDFVDNVEFYAAKNVFYLPETARWPYLKENSKQPNIASIVDKALSDIEKENKP 116

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSE 169
            +    +  +SS      +A  L  +     G +   ++   + ++  +YE+ + +F  +
Sbjct: 117 LRGALPNNYYSSLG---IEAEKLGSLLDKIDGFDTILESADGNDIIGRVYEYFLSKFAIK 173

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +G  +F TP+ +V+L   ++                 +YDP CG+GG    +M  V  
Sbjct: 174 EGKGKGEFYTPKTIVNLIAEMI-----------EPYEGKIYDPCCGSGGMFVQSMKFVES 222

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
              + +    +  +GQE    T  +    + IR + +D     +      +T + D    
Sbjct: 223 HHGNRRK---VSVYGQEYTKTTFKLAKMNLAIRGIAADLGDYAA------NTFTDDRHKD 273

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLEL 348
            +  + ++NPPF       +     +++  +  R+ G  +P  S+ +  +++++ +KL  
Sbjct: 274 LKADFIMANPPFN------QKDWRADNQLTDDPRWDGYDVPPTSNANYAWILNMVSKL-- 325

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  G A  +L++  L    A   E EIRR ++E  L+EAIV LP +LF+ T+I+  LW
Sbjct: 326 --SSNGVAGFILANGAL---SADGTEGEIRRKMIERGLVEAIVILPRNLFYSTDISVTLW 380

Query: 409 ILSNRKT-------------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           I++  K               +R  ++  I+   +         K     D+  R++ D 
Sbjct: 381 IINANKKGRLVNRNGEDIHYRDREKEILFIDMRQMGEPFEK---KYVRFTDEDIRKVADT 437

Query: 456 YVSRE-NGKFSRMLDYRTF 473
           Y + +  G      D   F
Sbjct: 438 YHNWQREGHTETYTDIPEF 456


>gi|315152687|gb|EFT96703.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0031]
          Length = 531

 Score =  289 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 103/544 (18%), Positives = 209/544 (38%), Gaps = 69/544 (12%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  +   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T+ +    +++  ++++       N++ G T
Sbjct: 235 NVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     FL
Sbjct: 283 LNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFL 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 391 GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           +  + ++ +  +         +  P  +    ++  +  +      +K+         ++
Sbjct: 444 KGVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKEL 503

Query: 519 LKPM 522
           L+ +
Sbjct: 504 LEAI 507


>gi|77165284|ref|YP_343809.1| hypothetical protein Noc_1809 [Nitrosococcus oceani ATCC 19707]
 gi|254434165|ref|ZP_05047673.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|76883598|gb|ABA58279.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090498|gb|EDZ67769.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 849

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 155/473 (32%), Gaps = 93/473 (19%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +       SL N +WK A+ L  +    ++  V+L    L+ +  A E  +  +   +
Sbjct: 1   MNDTEQQFLKSLDNKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEQLLALF 60

Query: 60  ------------LAFGGSNIDLESFVKVAG--------YSFYNTSEYSLSTLGSTNTR-- 97
                         + G     ++                F+       +T+        
Sbjct: 61  KDESNDIYYLSPEDYDGDADYQQALRDELEILDYYREANVFWVPKAARWNTVKEKAVLPV 120

Query: 98  ----------------------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
                                 +N    I   +   + I        +  +LE   LL  
Sbjct: 121 GTVLWQDDAGNDVKLRSVSWLMDNALEAIEKSNAKLRGILNRI----SQYQLENEKLLG- 175

Query: 136 ICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   FS                    ++ ++YE+ + +F     +    + TP+ +V L 
Sbjct: 176 LINTFSDTSFTKPVYGGEKLHLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLI 235

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILVP 242
             +L                 +YDP  G+GGF   +   + +          +    +  
Sbjct: 236 VEML-----------EPYSGRVYDPAMGSGGFFVSSDKFIEEHAKEQHYDPAEQKKHISV 284

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    M IR ++ +  +      +   T   D     R  + ++NPPF 
Sbjct: 285 YGQESNPTTWKLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFN 338

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K               +  R+  G P   + +  ++ H+ + L      G  A ++ + 
Sbjct: 339 MK-------DWWSESLADDARWQYGTPPKGNANFAWMQHMIHHLAPT---GSMALLLANG 388

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           S        + E +IR+ L+E DL+E +VALP  LF  T I   +W L+  K 
Sbjct: 389 SM---SAHTNNEGKIRQRLIEEDLVECMVALPGQLFTNTQIPACIWFLTKDKA 438


>gi|298253166|ref|ZP_06976958.1| type I restriction system adenine methylase (hsdM) [Gardnerella
           vaginalis 5-1]
 gi|297532561|gb|EFH71447.1| type I restriction system adenine methylase (hsdM) [Gardnerella
           vaginalis 5-1]
          Length = 561

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 111/565 (19%), Positives = 206/565 (36%), Gaps = 72/565 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREK- 58
           T      A L   IWK A+DL G     DF   +L     R +   L     +     + 
Sbjct: 30  TRKEEERAELHRTIWKIADDLRGSVDGWDFKAYVLCTMFYRYISENLCDYINKDEHESEG 89

Query: 59  ------YLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLESYIA------ 105
                 Y      + +      ++   F+   SE   + L +    +NL   ++      
Sbjct: 90  GDPDFDYAKISDEDAEPLRSEMISEKGFFILPSELFCNVLKNAPQDSNLNETLSRVFRNI 149

Query: 106 -------SFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHP-DTVPD 152
                    S + K +F D+D ++   +L            K+ +  S ++L   +    
Sbjct: 150 EASSQGTDSSGDFKGLFSDYDVNNI--KLADTVEGRNKRFVKLLQVISEMKLGSVNNNVI 207

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP +V  L T L               I ++YDP
Sbjct: 208 EAFGDAYEYLMGLYASNAGKSGGEYFTPAEVSMLLTRLGTTGK--------SSISSVYDP 259

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +     +         +GQE    ++ +C   M +  +  +     
Sbjct: 260 ACGSGSLLLKTKKVLGIENINGG------FYGQEKNVTSYNLCRMNMFLHDVNFNKFE-- 311

Query: 273 SKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
              I  G TL        K+F   +SNPP+   WE D + +          RF P   L 
Sbjct: 312 ---ITCGDTLINPQIDANKKFELVVSNPPYSTSWEGDSNPLMIN-----DPRFAPAGVLA 363

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   M F++H    L       G AAIV     ++ G A   E +IR++L+E++ ++ 
Sbjct: 364 PKSKADMAFVLHCLAHLAED----GAAAIVCFPGIMYRGGA---EQKIRQYLIEHNAVDC 416

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP++LFF T+IAT + +L   K  +    +  ++A+  +    N       ++D+  
Sbjct: 417 VIQLPSNLFFGTSIATCIMVLRKNKQNDTS--ILFVDASQQFVKSTNS----NKLSDENI 470

Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            QI+  Y SR++ +  + +         +  +     +     +  +   E +     + 
Sbjct: 471 EQIVKWYTSRQDVEHIAHVASLEEVESNKYNLSVSTYVEVEDTREKINITELNAQIASVC 530

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAE 533
              Q     I K + +        +
Sbjct: 531 AREQELREQIEKIVSEIEAGSVNFD 555


>gi|160887311|ref|ZP_02068314.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483]
 gi|260171380|ref|ZP_05757792.1| Type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
 gi|315919693|ref|ZP_07915933.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
 gi|156107722|gb|EDO09467.1| hypothetical protein BACOVA_05329 [Bacteroides ovatus ATCC 8483]
 gi|313693568|gb|EFS30403.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp. D2]
          Length = 514

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 213/557 (38%), Gaps = 76/557 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M+E       L + +W  A  L G+   +DF    L F   + L   +E   + + E+  
Sbjct: 1   MSEEL--QQKLRSQLWTVANTLRGNMSASDFMYFTLGFIFYKYLSEKIELYANEILEEDH 58

Query: 59  ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIASF 107
                 +               +    ++   EY  ST+        N   +LE  +   
Sbjct: 59  ITFKEVWNGKDEELKQDVKEECIQNLGYFIEPEYLYSTIIELISKKENILPSLERSLKKI 118

Query: 108 SDNAKAIFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVM 155
            D+      + DF    + L            +K  L+  +    +GI+       D  +
Sbjct: 119 EDSTIGQDSEDDFGGLFSDLDLASPKLGKTADDKNKLISDVLIALNGIDFGLQEAGDIDI 178

Query: 156 -SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE++I +F +   + A +F TP++V  +   +++             ++ ++DPTC
Sbjct: 179 LGDAYEYMISQFAAGAGKKAGEFYTPQEVSQILAEIVITGKV--------RLKDVFDPTC 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L              K        GQE  P T  +C   ML+  ++ +       
Sbjct: 231 GSGSLLL----------RTAKSGKADSIFGQEKNPTTFNLCRMNMLLHGVKYN-----DF 275

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           +IQ G TL  D F  ++F   ++NPPF   W         +       RF     L   S
Sbjct: 276 DIQNGDTLEADAFGDRQFDAVVANPPFSADWTAADKFNNDD-------RFSKAGVLAPRS 328

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIV 391
                F++H+   L    N GG  A V     LF G A   E +IR++L+E  + I+AI+
Sbjct: 329 KADYAFILHMIYHL----NDGGTMACVAPHGVLFRGAA---EGKIRQFLIEKKNYIDAII 381

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++F+ T+I T + ++  +K  +    +  I+A+  +  ++     +  +  +  ++
Sbjct: 382 GLPANIFYGTSIPTCILVI--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPEHIQK 435

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D Y  R+  + +S     +        +  P R     ++     + A +T  K    
Sbjct: 436 IIDTYRERKEIEKYSHCATLQEVKENDYNLNIP-RYVDTFEEEEEIDIHAVMTEIKELEA 494

Query: 511 HQSFWLDILKPMMQQIY 527
            ++     +   ++++ 
Sbjct: 495 KRAELDKQIDVYLKELG 511


>gi|311747174|ref|ZP_07720959.1| type I restriction-modification system, M subunit [Algoriphagus sp.
           PR1]
 gi|126578883|gb|EAZ83047.1| type I restriction-modification system, M subunit [Algoriphagus sp.
           PR1]
          Length = 802

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 105/500 (21%), Positives = 192/500 (38%), Gaps = 72/500 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKSELYSSLWASCDELRGGMDASQYKDYVLVMLFIKYISDKW--------------- 45

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            +           G SF       +  L   T+  + +   I +    A  + +  DF+ 
Sbjct: 46  -AGQPFAPITIPEGASFK-----DMIALKGKTDIGDQINKKIIAPLKEANNLSDMPDFND 99

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
            + +L         L  +   F   EL         D ++ + YE+L+  F +E  +   
Sbjct: 100 -VNKLGDGKEMVDRLSNLITIFQKKELDFSKNRAEGDDILGDAYEYLMMHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++    D           T+YDPTCG+G  L    +          
Sbjct: 159 QFYTPAEVSRIMAMIIGISQD-----QTNANTTVYDPTCGSGSLLLRIGSAAKT------ 207

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKR 291
               +  +GQE +  T A+    M++           S  I+QG+TL+  LF      K+
Sbjct: 208 ---KVTLYGQEKDSATSALSRMNMILH-------DYPSAEIKQGNTLANPLFLEDGKMKQ 257

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPP 350
           F Y ++NPPF  K   +  ++  +       RF G G+P   +G   +L+H+   L+   
Sbjct: 258 FDYVVANPPFSDKRWSNGLSIPND---EPNNRFAGFGVPPSKNGDFAYLLHIVRSLKRNA 314

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
            G    AI+L    LF G A   E+EIR  L++   I+ I+ LP +LF+ T I   + ++
Sbjct: 315 KG----AIILPHGVLFRGNA---EAEIRTNLIKKGYIKGIIGLPANLFYGTGIPACIILI 367

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-RENGKFSRMLD 469
                  R+  V +++A+  +     +G K R + +   R I D++ +  E   +SRM+ 
Sbjct: 368 DKENALNRKA-VFMVDASKGYI---KDGNKNR-LREQDIRNITDVFNAQFEVPGYSRMVS 422

Query: 470 YRTFGYRRIKVLRPLRMSFI 489
                     +  P  +   
Sbjct: 423 KHEIEQNEYNLNLPRYIDSQ 442


>gi|262369882|ref|ZP_06063209.1| N-6 DNA methylase [Acinetobacter johnsonii SH046]
 gi|262314921|gb|EEY95961.1| N-6 DNA methylase [Acinetobacter johnsonii SH046]
          Length = 576

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/524 (17%), Positives = 168/524 (32%), Gaps = 105/524 (20%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L + +WK A+ L       ++  ++L    L+ +  A +  +S ++E +      NI
Sbjct: 9   LNDLDDKLWKAADKLRSSLDAANYKHIVLGLIFLKYVSDAFDERQSELKELFAQKDDHNI 68

Query: 68  -------------------DLESFVK--VAGYSFYNTSEYSLSTLGSTN----------- 95
                              D    +        F+       S +               
Sbjct: 69  YYMPRDQYDSEEEYQQSIADELEILDYYQEKNVFWVPKAGRWSNIRDAAALPIGSIIWQD 128

Query: 96  -------------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                          +N    I   +   K I                  L  +   FS 
Sbjct: 129 EQGQDVKLRSVSWLIDNAFDEIEKANPKLKGILNRIGQYQL-----DNDKLLDLINTFSD 183

Query: 143 IEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
                        +     ++ ++YE+ + +F     +    + TP+ +V L   +L   
Sbjct: 184 TSFTQPEYNGEKLNLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249
                   P   R +YDP  G+GGF   +   +            +    +  +GQE  P
Sbjct: 241 -------QPYKGR-VYDPAMGSGGFFVSSEKFIEQHAQEKRYKASEQKKHISIYGQESNP 292

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +    M IR ++ +  +      +   +  +D     R  + ++NPPF  K     
Sbjct: 293 TTWKLAAMNMAIRGIDFNFGK------KNADSFLEDQHPDLRADFVMANPPFNIK----- 341

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                        R+  G P   + +  ++ H+ + L      G  A ++ + S   N  
Sbjct: 342 --DWWHASLENDVRWKYGTPPQGNANFAWMQHMLHHLSPT---GSMALLLANGSMSSNTN 396

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---------RKTEERRG 420
               E EIR+ L+E DL+E IVALP  LF  T I   +W L+          +K   R G
Sbjct: 397 N---EGEIRKNLIEADLVECIVALPGQLFTNTQIPACIWFLTKDKKNGLSLDKKKANREG 453

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           K   I+A +L           R   D    +I +   + + G+ 
Sbjct: 454 KTLFIDARNLGYMKDRV---LRDFTDADIAKITNALHAWQQGEN 494


>gi|297625332|ref|YP_003687095.1| Type I restriction-modification system DNA methylase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921097|emb|CBL55644.1| Type I restriction-modification system DNA methylase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 522

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/559 (20%), Positives = 207/559 (37%), Gaps = 70/559 (12%)

Query: 1   MTEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPT 51
           MTE T  +  A L   IW+ A DL G     DF   +L     R +   L       E  
Sbjct: 1   MTESTKESERAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYINKGEHA 60

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-RNNLESYIASFSDN 110
              V   Y     S+  +     V    F+         +        NL   +A+   N
Sbjct: 61  AGDVDFNYADLPDSDAAMALRETVDEKGFFILPSDLFENVRHDAPHNPNLNETLANAFAN 120

Query: 111 A-------------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT-VPDR 153
                         K +F+D D +S     + +++   L K+      + L         
Sbjct: 121 IENSAAGTSSEGDLKGLFDDLDVNSNRLGNSVMQRNEKLVKLLDAVGDLPLGNFGEHTID 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L+  + S   +   +F TP++V  L T + +     + K        +YDP 
Sbjct: 181 LFGDAYEYLMTMYASSAGKSGGEFYTPQEVSELLTRITVVGKTHVNK--------VYDPA 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +   G            GQE+   T+ +C   M +  +         
Sbjct: 233 CGSGSLLLKFGQVLGQGGVRKG------YFGQEINLSTYNLCRINMFLHGIN-----YSD 281

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++     +  F   +SNPP+   W  + +            RF P   L  
Sbjct: 282 FDIALGDTLTEPKHWDEEPFEAIVSNPPYSIHWAGNDNPT-----LINDPRFSPAGVLAP 336

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ ++ +
Sbjct: 337 KSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---ERKIRKYLIDNNFVDTV 389

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T I T + +L   K +     V  ++ +  +      G K   ++D  R+
Sbjct: 390 IQLPPDLFFGTTIGTCIIVLKKSKRDNS---VLFVDGSAEFV---RPGNK-NKLDDANRQ 442

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +ILD + +RE+  + ++++           +     +        +   E +    K+  
Sbjct: 443 KILDAFTAREDADYFAKLVPASELADNDYNLSVSSYVQPEDTTEKIDITELNARIAKI-V 501

Query: 510 LHQSFWLDILKPMMQQIYP 528
             QS     +  ++  +  
Sbjct: 502 ARQSELRTQIDAIVADLED 520


>gi|153805905|ref|ZP_01958573.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185]
 gi|149130582|gb|EDM21788.1| hypothetical protein BACCAC_00145 [Bacteroides caccae ATCC 43185]
          Length = 506

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/489 (20%), Positives = 188/489 (38%), Gaps = 55/489 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L +F+W  A  L G      + + I P    +R+    +        +      + 
Sbjct: 16  SLEDLKSFLWGAATRLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGYVCEGGIEYANA 75

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD----------NAKAIFE 116
              E  +++   + +         +G       +   I   +             + IF 
Sbjct: 76  QAQELVIRIPDGAHWRDVRECTENVGQRLVEAFI--AIEQANPGEHADGRVIGGLEGIFG 133

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             D  +  A++    ++  + ++FS   L     P   M   YE+L+ +F  +    A++
Sbjct: 134 PKDGWTNKAKMPDH-IITSLIEDFSRYNLSLKACPADEMGQAYEYLVGKFADDAGNTAQE 192

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F T R VV L   +L           P    ++YDPTCG+GG L   ++ +       + 
Sbjct: 193 FYTNRTVVDLMAEIL----------QPRPGESIYDPTCGSGGMLVKCLDFLR---KKGEP 239

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
              +   GQE+   T A+    + +  +E         +I +  TL+   F      ++F
Sbjct: 240 WQGVKVFGQEINALTSAIARMNLYLNGVE-------DFSIVREDTLAYPAFVDGSKLRKF 292

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPP+  K    +  +     N + GR   G P  S     F+ H+ + +      
Sbjct: 293 DIVLANPPYSIKTWDREAFI-----NDKWGRNFLGTPPQSKADYAFIQHILSSMNDH--- 344

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GR AI+L    L        E +IR+ L++NDLI+A++++  +LFF + +   + I  +
Sbjct: 345 -GRCAILLPHGVLNR----LIEKDIRQKLIQNDLIDAVISIGKNLFFNSPMEACILICRS 399

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYR 471
            K  +R+ K+ LI ATDL             + ++    I  IY    N    S++++  
Sbjct: 400 NKPTDRKNKILLIKATDLVER----KNTESYLTNEHISIITSIYTRYTNIDGRSKIINNN 455

Query: 472 TFGYRRIKV 480
                +  +
Sbjct: 456 EIPDNKYSI 464


>gi|242280199|ref|YP_002992328.1| site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio salexigens DSM 2638]
 gi|242123093|gb|ACS80789.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio salexigens DSM 2638]
          Length = 548

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 106/572 (18%), Positives = 202/572 (35%), Gaps = 82/572 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY--------- 59
             L   +W  A  L        +  V+L    L+ +  + E  +  + + +         
Sbjct: 11  KDLDKRLWDAACKLLPSLDAAVYKHVVLGLVFLKYVGDSFEQRKYELLKNFTNPDHEYFL 70

Query: 60  -LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--------------------TNTRN 98
                      E    V    F+         L                          +
Sbjct: 71  EDDEDPMEEIEERDYYVEENVFWVPESGRWVNLMDCAKLNPGEPLPWGDKTFKSVGALID 130

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
           +  + +   +   K +         +      G L ++    + I   H       ++ +
Sbjct: 131 DAMTAVEKENPVLKNVLNKDYARLEVPD----GKLSEVMDLINSIPFEHESLKSKDILGH 186

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+ +  F +   +    + TP+ +V+L T +L           P   R +YDP CG+G
Sbjct: 187 VYEYFLGEFAAAEGKKGGQYYTPKSIVNLITEML----------RPYKGR-IYDPACGSG 235

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           GF   +   V         P  L  +GQE  P T  +    M IR +E D  ++ +    
Sbjct: 236 GFFVSSEEFVETHTHR---PADLAIYGQESNPTTWRLAAMNMAIRGIEYDFGKEPA---- 288

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              T + D     RF Y ++NPPF  K                  R+  GLP  ++ +  
Sbjct: 289 --DTFTNDQHGTMRFDYIMANPPFNLKGWGADSLAN-------DVRWKYGLPPDNNANFA 339

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H+ + L       G+  ++L++  +    A SGE +IRR ++E+DL+E IVALP  L
Sbjct: 340 WMQHMIHHLSPK----GKMGLLLANGSM--SSATSGEGDIRRKIIEDDLVECIVALPGQL 393

Query: 398 FFRTNIATYLWILSNRKT--------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           F  T I   +W L+  K+          R G+V  I+A +    +      R    +   
Sbjct: 394 FTNTQIPACIWFLNKDKSNGQNIEDLRNRTGEVLFIDARNCGYMLDRVL--RDFHPEKDI 451

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYR-RIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++I    +S + G+ S +      G+   + +    +  ++L        E         
Sbjct: 452 QRIAHTLLSWQVGEKSAVKYEDVPGFCAAVTLDDIRKHDYVLTPGRYVGAEE---IEDNG 508

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           P  +    ++   + +Q+      +  ++E++
Sbjct: 509 PPFEEKMGELSTSLYEQMREGERLDKLIRENL 540


>gi|260582497|ref|ZP_05850288.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094477|gb|EEW78374.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 579

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 93/572 (16%), Positives = 190/572 (33%), Gaps = 86/572 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 45  LNELDEKLWASADKLRKQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELTDPENPLY 104

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                    E+Y     + ++   +   A   F+  +      L   +   N  + +   
Sbjct: 105 FDRTFFDTEEEYQKALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 162

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVPD 152
             F+  AK I + FD       +L                L  +   FS     P    +
Sbjct: 163 GKFAGVAKLIDDAFDAIEKDNEKLTGVLQRISGYAVNEDTLRGLIILFSDTHTRPTYNGE 222

Query: 153 -------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   ++ ++YE+ +  F     +    + TP+ +V L   +L              
Sbjct: 223 PVHLGAKDILGHVYEYFLGHFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPY 271

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR ++
Sbjct: 272 SGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGID 328

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            D  +  +       + ++     K+  + ++NP F        D         +  R+ 
Sbjct: 329 YDFGKYNA------DSFTQPQHIDKKMDFIMANPHFN-------DKDWWNESLADDPRWA 375

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  D
Sbjct: 376 YGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINAD 429

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           L+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R   
Sbjct: 430 LVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFT 484

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITW 504
            D   +I D   + +    S   + +    +   +       F+L         E +   
Sbjct: 485 ADDIAKIADTLHTWQT---SDGYENQAAFCKSTTLEEIKDNDFVLTPGRYVGTAEQEDDG 541

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +   Q+    + +   +        +  +
Sbjct: 542 VPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 573


>gi|21228396|ref|NP_634318.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906869|gb|AAM31990.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 808

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/504 (20%), Positives = 192/504 (38%), Gaps = 73/504 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MALKKSELYSSLWSSCDELRGGMDASQYKDYVLVLLFIKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSDNAKAIFEDFDFSS 122
            ++I         G SF       +  L    +  + +   I +   NA  + +  DF+ 
Sbjct: 45  YADIPFAPINVPEGASFK-----DMVALKGKPDIGDQINKKIIAPLVNANKLSDMPDFND 99

Query: 123 TIARLEKAG----LLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
           + A+L         L  +   F    L         D ++ + YE+L+R F +E  +   
Sbjct: 100 S-AKLGSGKEQVERLTNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   +L          +     T YDPTCG+G  L    +         +
Sbjct: 159 QFYTPAEVSRIIAQILGIRYADTTSST-----TAYDPTCGSGSLLLKVAD---------E 204

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KR 291
               +  +GQE +  T  +    M++         +    I QG+TL+   F      K 
Sbjct: 205 ARTKITLYGQEKDATTSGLARMNMILHN-------NPEALIVQGNTLTDPRFKDRETLKT 257

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPP 350
           F Y ++NPPF  K    + +   +       RF P G+P    G   +L+H+   L+   
Sbjct: 258 FDYVVANPPFSDK----RWSTGLDPLKDIYERFKPFGIPPAKQGDYAYLLHIVRSLKST- 312

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ A +L    LF G     E+EIR  L+    I+ I+ LP +LF+ T I   + ++
Sbjct: 313 ---GKGACILPHGVLFRGN---SEAEIRHALVRKGYIKGIIGLPANLFYGTGIPACIIVI 366

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLD 469
              + + R+  + +I+A+  +     +G K R +      +I+D++  +    K+SR++ 
Sbjct: 367 DKEEAQNRKS-IFMIDASAGFM---KDGPKNR-LRAQDIHRIVDVFTRQAEIPKYSRIVS 421

Query: 470 YRTFGYRRIKVLRPLRMSFILDKT 493
           +         +  P  +    D+ 
Sbjct: 422 FEEIEKNEFNLNLPRYIDSQQDED 445


>gi|167740610|ref|ZP_02413384.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 14]
          Length = 535

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 121/574 (21%), Positives = 206/574 (35%), Gaps = 94/574 (16%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLA------ 61
             L   +W  A+ L G     DF   +L F  LR +    E   +  +   Y        
Sbjct: 7   QKLGKALWAIADQLRGAMNADDFRDYMLAFLFLRYISDNYEAAAKKELGSDYPEAIDGAA 66

Query: 62  --------FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103
                    G      E   ++     Y     +    +       + E         SY
Sbjct: 67  STPLQLWYEGNFEDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDKELLKTLQKGFSY 126

Query: 104 IA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I   SF+   + +F + + +S   +L     E+   L KI    +   L   +     + 
Sbjct: 127 IENESFASTFRGLFSEINLAS--DKLGKTYGERNAQLCKIIGEITK-GLAAFSTDSDTLG 183

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F +   + A +F TP+ V  + + ++              + ++ D  CG+
Sbjct: 184 DAYEYLIGQFAAGSGKKAGEFYTPQPVSTILSTIVTLDSQEPATGQRSHLESVMDFACGS 243

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +  + +   G           +GQE    T+ +    ML+  ++     D    I
Sbjct: 244 GSLLLNVRHRMGTHGIGK-------IYGQEKNITTYNLARMNMLLHGVK-----DSEFEI 291

Query: 277 QQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PG 327
             G TL  D             +F   ++NPPF  +WE  +         GE  RF   G
Sbjct: 292 FHGDTLFNDWDMLRETNPAKMPKFDAVVANPPFSYRWESTEAM-------GEDVRFKNHG 344

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     FL+H  + L+      G  AI+L    LF   A   E+ IR  LL++  I
Sbjct: 345 LAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRSGA---EARIRTKLLKDGHI 397

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LFF T I   + +L   K       V  INA + +      GK++  +  +
Sbjct: 398 DTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEYFEK----GKRQNQLLPE 450

Query: 448 QRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+D Y  R E  ++S          RR+ +    +  F L+ +         T   
Sbjct: 451 HIHKIVDTYKFRKEEARYS----------RRVSMEEIEKHDFNLNISRYVS-----TAEA 495

Query: 507 LSPLHQSFWLDILKPMMQQIYPY-GWAESFVKES 539
              +  +   D L  + ++I         F+KE 
Sbjct: 496 DEEIDFAAVHDELVSLGKKIKSATEQHNKFLKEL 529


>gi|11500027|ref|NP_071277.1| type I restriction-modification enzyme, M subunit [Archaeoglobus
           fulgidus DSM 4304]
          Length = 508

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/543 (18%), Positives = 211/543 (38%), Gaps = 59/543 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
           E   +   L     + A+ +        +   IL    L++L       +   RE     
Sbjct: 8   EIETTKDELIRACKQAADLIRTRVD---YK-YILVLLFLKKLSDEW---KREYREALKTL 60

Query: 63  GGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKA 113
               +D E    +A     + F    +Y+   L        +        +A  +   + 
Sbjct: 61  MEKGVDEEEAKILAKDRSFHKFDYPEKYTWEELRKNVNELPVRLSEALKLLAEKNPELQG 120

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           + +  DF       +   +L ++ + FSG+ L      D ++ + YE LI  F  + ++ 
Sbjct: 121 VVDRLDFLEFTRARDNFDILVQLFELFSGLNLG--RASDSILGDAYEWLIGYFAPQKAKE 178

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +  TP +VV L   ++           P  + ++YDP  G    L  A ++V +    
Sbjct: 179 -GEVFTPSEVVELIVRIV----------DPKPMDSVYDPAAGYARMLIRAYDYVKEKYGE 227

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
            ++  +   +GQE+ P T+A+     ++  ++         N+  G TL    F      
Sbjct: 228 EEVRKLF-LYGQEVNPTTYAIAKMNAIVHGIKDI-------NLVVGDTLKNPRFKEGETF 279

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++F   ++NPP+ +    +++  + E       RF  G          ++ H+    +  
Sbjct: 280 RKFDIVIANPPWNQDGYGEEELKKAEF---YDERFRYGFTPKQSADWAWIQHMLASAKK- 335

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
                +  +V+ +  LF G     E  IR+ ++E+DLIE ++ LP  LF+ T     + I
Sbjct: 336 -----KVGVVIDNGCLFRGGK---EGAIRKAVVEDDLIECVILLPEKLFYNTGAPGAIII 387

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468
            + +K E R+GK+  INA++ +       +K   + +    +I+  Y   ++G  F R++
Sbjct: 388 FNKQKPESRKGKILFINASNEYEKHPEV-RKLNRLGEKHIEKIVSAYREFKDGDGFCRVV 446

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           D          +   L   ++  +  +  ++    W +L  + +    ++ + + + +  
Sbjct: 447 DVEEVRKNDYNLNVTL---YVFPQEEVEEIDVAKEWEELRGIERE-IDEVERRIEEYLAE 502

Query: 529 YGW 531
            G+
Sbjct: 503 LGF 505


>gi|254181647|ref|ZP_04888244.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 1655]
 gi|184212185|gb|EDU09228.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 1655]
          Length = 537

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 118/567 (20%), Positives = 206/567 (36%), Gaps = 82/567 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKYLA------ 61
             L   +W  A+ L G     DF   +L F  LR L    E   +  +   Y        
Sbjct: 7   QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGPDYPQQIDGSV 66

Query: 62  -------FGGSNIDLESFVKVAG-YSFYNTSE-YSLSTLGSTNTRNNLE---------SY 103
                  + G+ ID+  F K       Y     +    +       +           SY
Sbjct: 67  STPLQLWYEGNLIDVPEFEKQMRRKVHYVIEPQFLWGNIAEMARTQDAALLKTLQRGFSY 126

Query: 104 IA--SFSDNAKAIFEDFDF-SSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           I   SF+   + +F + +  S  + +  +E+   L KI K  +   L   +     + + 
Sbjct: 127 IENESFASTFRGLFSEINLASDKLGKTYVERNTRLCKIIKEIAD-GLKQFSTDSDTLGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ +  + +A++              + ++ D  CG+G 
Sbjct: 186 YEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSNLDSVMDLACGSGS 245

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +  + + +             +GQE    T+ +    ML+  ++     D    I  
Sbjct: 246 LLLNVRHRMKEAKGTIGK-----IYGQEKNITTYNLARMNMLLHGVK-----DSEFEIFH 295

Query: 279 GSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLP 329
           G TL  +             +F   ++NPPF  +WE  +          E  RF   GL 
Sbjct: 296 GDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPTEA-------LSEDVRFKNYGLA 348

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H  + L+      G  AI+L    LF G A   E+ IR  LL++  I+ 
Sbjct: 349 PKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---EARIRTKLLKDGHIDT 401

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LFF T I   + +L   K       V  INA + +      GK++  I  +  
Sbjct: 402 VIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GKRQNQILPEHI 454

Query: 450 RQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +I+D Y  R E  ++S          RR+ +    +  F L+ +             L+
Sbjct: 455 DKIIDTYQFRKEEARYS----------RRVGMEEIEKNDFNLNISRYVSTAEAEEQIDLA 504

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESF 535
            +H        +  +       + +  
Sbjct: 505 AVHAELVSLDKQIKLATERHNEFLKEL 531


>gi|60681329|ref|YP_211473.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           NCTC 9343]
 gi|60492763|emb|CAH07537.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           NCTC 9343]
          Length = 513

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/554 (20%), Positives = 210/554 (37%), Gaps = 83/554 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTR 52
           M+E       L   +WK A ++ G+   +DF    L     + L           L+   
Sbjct: 1   MSEEQQRI--LKAQLWKMACEMRGNMNASDFMNFGLGLIFYKYLSERIEMFINDQLQNDN 58

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL------------ 100
           +  R  +             V +    ++   EY  STL +                   
Sbjct: 59  TDFRTVWADGNEDIKQELRNVAIEDIGYFLEPEYLFSTLATDAKDGKFILEALGQSFKHI 118

Query: 101 -ESYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
            +S +++ S++  + +F+D D +S   +L     +K  L+  +      I+         
Sbjct: 119 EDSTLSADSEDDFQNLFDDVDLTSV--KLGKTADDKNKLISNLLLALDEIDFCLKDTEID 176

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE++I  F +   + A +F TP+ V  +   ++    +         +R +YDPT
Sbjct: 177 ILGDAYEYMIGEFAAGAGQKAGEFYTPQQVSKVLAQIVTADKE--------RVRNVYDPT 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L              K       +GQE  P T+ +    ML+     D      
Sbjct: 229 CGSGSLLLSV----------AKEGFAEFIYGQEKNPTTYNLARMNMLLHNKRYDK----- 273

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            +I+ G TL  D F  + F   ++NPPF  +W  D      +       R G  L   S 
Sbjct: 274 FDIRSGDTLEDDQFENEVFDAIVANPPFSAQWSADSKFNTDDR----FSRAGA-LAPKSK 328

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVA 392
               F++H+ + L      GG  A V     LF G     E +IRR+L+E  + I+AI+ 
Sbjct: 329 ADYAFILHMIHHLHD----GGTMACVAPHGVLFRGA---SEGKIRRYLIEAKNYIDAIIG 381

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T+I T + +L  +K  +    V  I+A+  +  I+     +  ++ +   +I
Sbjct: 382 LPANLFYGTSIPTCILVL--KKCRKEGDDVLFIDASKGFEKIKT----QNKLSPEHIEKI 435

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLH 511
           ++ Y +R   +             +  +       F L+    +   E +      + + 
Sbjct: 436 VNTYKNRAEIE---------KYSHKATIEEIAENDFNLNIPRYVDTFEEEEEIDIKAVMK 486

Query: 512 QSFWLDILKPMMQQ 525
           +   L+  +  + +
Sbjct: 487 EIKMLEAKRSELDR 500


>gi|91775573|ref|YP_545329.1| type I restriction-modification system, M subunit [Methylobacillus
           flagellatus KT]
 gi|91709560|gb|ABE49488.1| type I restriction-modification system, M subunit [Methylobacillus
           flagellatus KT]
          Length = 540

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 128/587 (21%), Positives = 213/587 (36%), Gaps = 101/587 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           MTE       L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTESEK--QKLGKTLWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGTDY 58

Query: 60  -----------------LAFGGSNIDL--ESFVKVAGYSFYNTSE-YSLSTLGSTNTRNN 99
                             A+   N+D   E   ++     Y     Y    +       +
Sbjct: 59  PDLPSDVLRQTGVNTPLQAWYEENLDDVSEFEKQMRRKVHYVIEPQYLWGNIAEMARTQD 118

Query: 100 LE---------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGI 143
            E          YI   SF+   + +F + + +S   +L     E+   L KI    +  
Sbjct: 119 DELLHTLQKGFKYIEEESFASTFRGLFSEINLAS--DKLGKTYTERNARLCKIIAEIAK- 175

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L   +     + + YE+LI +F +   + A +F TP+ +  + +A++            
Sbjct: 176 GLGQFSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKR 235

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             + +++D  CG+G  L +    +           I   +GQE    T+ +    ML+  
Sbjct: 236 SHLDSVFDFACGSGSLLLNVRRLM-------GPHGIGKIYGQEKNITTYNLARMNMLLHG 288

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           ++     D    I  G TL  +             +F   ++NPPF  +WE  +      
Sbjct: 289 VK-----DSEFEIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSEA----- 338

Query: 316 HKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
              GE  RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E
Sbjct: 339 --LGEDVRFKNYGLAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---E 389

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           + IR  LL++  I+ ++ LP +LFF T I   + +L   K       V  INA + +   
Sbjct: 390 ARIRTKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFER- 445

Query: 435 RNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
              GK++  +  +   +I+D Y  R E  ++S          RR+ +    +  F L+ +
Sbjct: 446 ---GKRQNQLLPEHIDKIIDTYRYRKEEPRYS----------RRVSMEEIEKNDFNLNIS 492

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA-ESFVKES 539
                    T      +  +  +  LK + Q+IY        F+KE 
Sbjct: 493 RYVS-----TAITEEEVDLNAVIGQLKAIEQEIYQAKSKHNEFLKEL 534


>gi|300721109|ref|YP_003710377.1| type I restriction-modification enzyme subunit M [Xenorhabdus
           nematophila ATCC 19061]
 gi|297627594|emb|CBJ88113.1| Type I restriction-modification enzyme subunit M [Xenorhabdus
           nematophila ATCC 19061]
          Length = 819

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/475 (21%), Positives = 183/475 (38%), Gaps = 70/475 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKNELYSSLWASCDELRGGMDASQYKDYVLTMLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAK--AIFEDFDF 120
             N      V   G SF       +  L       + +   I   +D  +   +F+  +F
Sbjct: 45  YKNDRYGIIVIPEGASF-----DDMVALKGKKEIGDKINKIIRKLADENRLGTMFDVANF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L K       L K+   F G++L  +    D +M + YE+L+R F +E  +   
Sbjct: 100 NDE-EKLGKGKEMIDRLSKLVGIFEGLDLSNNYAGGDDLMGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++   D            ++YDPTCG+G  L  A +         +
Sbjct: 159 QFYTPAEVSLVLAKIIGINDK------TPRDASVYDPTCGSGSLLLKASD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            P  L   GQE++  T ++    M++   ESD       N         D    K F + 
Sbjct: 204 APRGLSIFGQEMDVTTSSLAKMNMILHGHESDVHSIQQGNTIASPVFKDDKGQLKTFDFA 263

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF  K            +  E GRFG G+P   +G   FL+H+   L+      G+
Sbjct: 264 VANPPFSNKN----WTSGINPREDEFGRFGWGIPPEKNGDYAFLLHILKSLKST----GK 315

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G A   ES IR  L++   I+ I+ LP +LF+ T I   + +L  +  
Sbjct: 316 GAVILPHGVLFRGNA---ESLIRENLIKQGYIKGIIGLPANLFYGTGIPACIIVLDKQDA 372

Query: 416 EERR----------GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                           + +I+A+  +     +G K R +      +I++++  ++
Sbjct: 373 ISADFDAEGKVTRGRDIFMIDASRGFI---KDGNKNR-LRSQDIYKIVEVFTQQK 423


>gi|170025887|ref|YP_001722392.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|169752421|gb|ACA69939.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
          Length = 910

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/495 (19%), Positives = 192/495 (38%), Gaps = 64/495 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    TR  +  + +    
Sbjct: 49  NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 108

Query: 65  SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117
                          ++   +    +     S    +N+   +++F    S   K +FE 
Sbjct: 109 EEDADTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEG 168

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I          V+  IYE+L+ +F +  
Sbjct: 169 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAANA 227

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +        
Sbjct: 228 GKKAGEFYTPHEVSVLMSNIIAHELKH------KDTIKIYDPTSGSGSLLINIGEAFE-- 279

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             + K    +  + QEL+  T+ +    +++R +++   +      + G TL +D     
Sbjct: 280 -KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEEDWPYFD 333

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ + W+      +         RF  GL   +     FL
Sbjct: 334 DSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 386

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G     E +IR+ L+E + I+ ++ LP ++FF
Sbjct: 387 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTVIGLPANIFF 439

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + IL   K + +   V +++A+  +        K   +     ++I D  ++R
Sbjct: 440 GTGIPTVILIL---KQKRQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVINR 492

Query: 460 EN-GKFSRMLDYRTF 473
           E+  KFS+++  +T 
Sbjct: 493 ESIDKFSQLVSKQTL 507


>gi|313904109|ref|ZP_07837489.1| type I restriction-modification system, M subunit [Eubacterium
           cellulosolvens 6]
 gi|313471258|gb|EFR66580.1| type I restriction-modification system, M subunit [Eubacterium
           cellulosolvens 6]
          Length = 531

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 189/498 (37%), Gaps = 68/498 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------CALEPTR 52
           M E       L N +W  A+ L G     ++   +L     + L           L  T 
Sbjct: 1   MAEK----KDLLNVLWSGADVLRGKMDANEYKTYLLGLVFFKYLSDSYLAKVYDLLNDTT 56

Query: 53  SAVREK----YLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE------ 101
               ++    Y     S    +   ++     Y      +  ++ +    N         
Sbjct: 57  PDSLDEAQSQYEEIMKSEDAEDLLAELRDSMHYTLEPNMTYQSILNDAKNNAFNREKLQA 116

Query: 102 --SYIASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             + I    +    +F D D  S        +++  + ++ K   G +L        V+ 
Sbjct: 117 AFNRIQESDEIFNGLFSDVDLYSNRLGTGDQKQSDTIAEVIKVLDGADLI--HTSGDVLG 174

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N YE+LI +F SE  + A +F TP     +   + +   +            +YDP  G+
Sbjct: 175 NAYEYLIGQFASETGKKAGEFYTPHGPAQILCRIAMTGQEN------KKGLQVYDPCMGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  +    N+  +       P  +  +GQEL P T+ +    M +  +  +     ++++
Sbjct: 229 GSLMLSCKNYSTE-------PDFIKYYGQELMPSTYNLARMNMFLHGILPE-----NQHL 276

Query: 277 QQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           + G TL  D  T +   F     NPP+  KW   +   + E      G+    L   S  
Sbjct: 277 RNGDTLDADWPTDEETEFDVVTMNPPYSAKWSAAEGFKQDERFMDYGGK----LAPKSKA 332

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E  IR+ LLEN  I A++ LP
Sbjct: 333 DYAFLLHGFYHLKPS----GTMAIVLPHGVLFRGAA---EGTIRQTLLENGSIYAVIGLP 385

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +++F+ T+I T + +L   +       V  I+A++L+   +    K+ ++ ++   ++L+
Sbjct: 386 SNMFYNTSIPTCIIVLKKHREGR---DVLFIDASNLYEKDK----KQNVMKEEHISKVLE 438

Query: 455 IYVSRENGKFSRMLDYRT 472
           +Y +R +      L    
Sbjct: 439 LYKNRASVDKQAYLASYE 456


>gi|313639655|gb|EFS04450.1| type I restriction-modification system, M subunit [Listeria
           seeligeri FSL S4-171]
          Length = 503

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/526 (20%), Positives = 187/526 (35%), Gaps = 79/526 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTR-----------SA 54
           ++  +   +W  A +L G    + +   +L     + L    LE  +             
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEIFKANSDCGQVSESEL 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103
           V E   A       L+  ++     F        + L                  N E  
Sbjct: 63  VEEYAKARADYGESLDKMIQGVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I  +  SD+ + +F       T   L     E++  +  + + F  + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +     ++   L  +GQE    T+ +    +L+  +  +        +
Sbjct: 233 GSLLLTVKKHLKE-----EVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEKMS-----V 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
           + G TLS+D             F   + NPP+            K +      RF     
Sbjct: 283 KNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFELAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I
Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP +LF  T I   + IL   +T      V +I+A+  +  +     K+ ++ + 
Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRT--ISDPVLVIDASRNFIKV----GKQNVLQEK 443

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
              +I+D YV R     +S +            +  P  +  I ++
Sbjct: 444 DIARIVDTYVERAEKTGYSHLASREEIIENEYNMNIPRYVEAIDEE 489


>gi|229553103|ref|ZP_04441828.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|258540282|ref|YP_003174781.1| type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
 gi|229313600|gb|EEN79573.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus rhamnosus LMS2-1]
 gi|257151958|emb|CAR90930.1| Type I restriction-modification system, M subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 549

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 111/591 (18%), Positives = 210/591 (35%), Gaps = 96/591 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M E    A  + + +W  A +L G+   ++F   IL F   R L       +    ++  
Sbjct: 1   MAEKNI-AQEITSQLWAMANELRGNMDASEFRNYILGFMFYRYLS----EHQERYLQETN 55

Query: 59  --------------YLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRN 98
                                    E    ++    Y  +   + ++L           +
Sbjct: 56  LFEPEAGQTWNDAFREVASDPESRKEYLEDISSELGYAIAPEQTWASLVQKVNDDKIVPS 115

Query: 99  NLESYIASFSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIEL 145
           + +     F+ NA          + IF D +   +    +   +A  L  + +     E 
Sbjct: 116 DYQDLFDDFNKNAALNPNSEADFRGIFADINLGDSRLGSSTTARAKALNGVVRLVDQFEY 175

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D     ++ ++YE+LI +F     + A +F TP  V  +   L+         +    
Sbjct: 176 -NDKQGRDILGDVYEYLIAQFAGNSGKKAGEFYTPHQVSKVLAKLVALGV-----QKDQE 229

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           I T+YDPT G+G  L    + +            ++ HGQEL   T  +    +++  + 
Sbjct: 230 IFTVYDPTMGSGSLLLTVRDELPATVKA------VMFHGQELNTTTFNLARMNLMMHNV- 282

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                  + +++   TL  D   G        + F   ++NPP+   W+  ++ +     
Sbjct: 283 ----PYTNMSLRNADTLEDDWPDGVVGGVDSPRSFDAVVANPPYSIHWDNSENKL----- 333

Query: 318 NGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +  RF P   L   S     F+ H    L    N  G  AIVL    LF G A   E 
Sbjct: 334 --KDPRFKPFGALAPKSKADFAFVEHGLYHL----NDTGTMAIVLPHGVLFRGAA---EG 384

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +IR+ ++E + ++A++ +P  LFF T I T + +    +T      +  I+A++ +    
Sbjct: 385 KIRKAIIEKNYLDAVIGMPAGLFFSTGIPTVVLVFKKNRTNR---DIFFIDASNNFEK-- 439

Query: 436 NEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
             GK + I+ D    +I++ Y  RE+  K++   +          +  P  +     +  
Sbjct: 440 --GKNQNILRDSDIDKIIEAYSKREDVDKYAHKAELDEIVENEYNLNIPRYVDTTEPEKP 497

Query: 495 LARL-------EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
           +  +       E D    KLS        D++    +        +   K 
Sbjct: 498 IDVVQVVADIKETDKKIAKLSSELAKDIDDLVANNDEAAKQLAALKELFKN 548


>gi|238760352|ref|ZP_04621493.1| Restriction-modification system, modification (Methylase) subunit
           [Yersinia aldovae ATCC 35236]
 gi|238701412|gb|EEP93988.1| Restriction-modification system, modification (Methylase) subunit
           [Yersinia aldovae ATCC 35236]
          Length = 776

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/495 (20%), Positives = 195/495 (39%), Gaps = 64/495 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L   L    T+  +  E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPEDIKALN 61

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117
             ++D   +V+     F  Y+    +     S    +N+   +++F    S   K +FE 
Sbjct: 62  EEDVDTVKYVQDNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I          V+  IYE+L+ +F +  
Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +        
Sbjct: 181 GKKAGEFYTPHEVSVLMSNIIAHELKHKNTIK------IYDPTSGSGSLLINIGEAFEQY 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             +      +    QEL+  T+ +    +++R +++   +      + G TL +D     
Sbjct: 235 AKN---KDSITYFAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEEDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ + W+      +         RF  GL   +     FL
Sbjct: 287 DSDPLGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G     E +IR+ L+E + I+ ++ LP ++FF
Sbjct: 340 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTVIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L   K + +   V +++A+  +        K   +     ++I D  ++R
Sbjct: 393 GTGIPTVILVL---KQKRQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVINR 445

Query: 460 EN-GKFSRMLDYRTF 473
           E+  KFS+ +  +T 
Sbjct: 446 ESIDKFSQRVSKQTL 460


>gi|327401776|ref|YP_004342615.1| adenine-specific DNA-methyltransferase [Archaeoglobus veneficus
           SNP6]
 gi|327317284|gb|AEA47900.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Archaeoglobus veneficus SNP6]
          Length = 509

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/516 (18%), Positives = 203/516 (39%), Gaps = 67/516 (12%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG--SNIDLESFVK 74
           + A+ +        +   IL    L+RL    +   +   +  +   G       E    
Sbjct: 22  QAADLIRTRVD---YK-YILVLLFLKRLSDEWKREYNEALKYLIEKEGLSREEAEELAKD 77

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSDNAKAIFEDFDFSSTIARLEK 129
           ++ + F    +Y+   L        ++       +A  +   + + +  DF       + 
Sbjct: 78  ISFHRFMYPEKYTWEELRKNVNELPVKLSEALKLLAEKNPELQGVVDRLDFLEFTRHRDN 137

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             +L ++ + FSG+ L      D ++ + YE ++  F  + ++   +  TP +VV L   
Sbjct: 138 FDILVQLFELFSGLNLG--RTSDSILGDAYEWIVGYFAPQKAKE-GEVFTPSEVVELIVK 194

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           ++          +P  + ++YDP  G    L  A ++V +     +   +   +GQE+ P
Sbjct: 195 IV----------APKPLESVYDPAAGYARMLIRAYDYVKEKYGEEEAKKLF-LYGQEVNP 243

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKW 305
            T+A+     ++  ++         N+  G TL    F      +RF   ++NPP+ +  
Sbjct: 244 TTYAIAKMNAIVHGIKDI-------NLVVGDTLKNPRFKDGESFRRFDVVIANPPWNQDG 296

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             + +  + E       RF  G P  +     ++ H+    +          +V+ +  L
Sbjct: 297 YGEVELKKAEF---YEERFKYGYPPNNSADWAWIQHMLASAKRC------VGVVIDNGCL 347

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F G     E  IR+ +L +DL+E ++ LP  LF+ T     + I + +K EER+ KV  I
Sbjct: 348 FRGGK---EKTIRKAILMDDLLECVILLPEKLFYNTGAPGAILIFNKQKPEERKSKVLFI 404

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           NA++ +       +K   + D+   +I++ Y   ++ +          G+ R+  L  ++
Sbjct: 405 NASNEYEKHPEV-RKLNRLGDEHIEKIVNAYREFKDVE----------GFCRVVSLDEIK 453

Query: 486 MS--------FILDKTGLARLEADITWRKLSPLHQS 513
            +        ++  K  +  ++    W +L  + + 
Sbjct: 454 ENDYNLNVTLYVFPKEEVEEIDVAREWEELKAIEEE 489


>gi|229846817|ref|ZP_04466924.1| type I modification enzyme [Haemophilus influenzae 7P49H1]
 gi|229810306|gb|EEP46025.1| type I modification enzyme [Haemophilus influenzae 7P49H1]
          Length = 576

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/499 (17%), Positives = 173/499 (34%), Gaps = 83/499 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 41  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLY 100

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                    E+Y     + ++   +   A   F+  +      L   +   N  + +   
Sbjct: 101 LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 158

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             F+  A+ I + FD       +L+               L  +   FS       T   
Sbjct: 159 GKFAGVARLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 218

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 219 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 267

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 268 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 324

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 325 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 371

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 372 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKGIINA 425

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           +L+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 426 NLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 480

Query: 445 NDDQRRQILDIYVSRENGK 463
             D   +I +   + +   
Sbjct: 481 TADDIAKIANTLHAWQKSD 499


>gi|153948702|ref|YP_001402490.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|152960197|gb|ABS47658.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 863

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 195/496 (39%), Gaps = 66/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    TR  +  + +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFSDNAKAIFE 116
              D ++   V G   Y  +  +L        S    +N R+ L ++    S   K +FE
Sbjct: 62  EE-DADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE 120

Query: 117 DF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                  + +++L ++       +  +      I          V+  IYE+L+ +F + 
Sbjct: 121 GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                 +YDPT G+G  L +       
Sbjct: 180 AGKKAGEFYTPHEVSVLMSNIIAYELKH------KDTIKIYDPTSGSGSLLINIGEAFE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286
              + K    +  + QEL+  T+ +    +++R +++   +      + G TL  D    
Sbjct: 233 --KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPFF 285

Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                   +        +SNPP+ + W+      +         RF  GL   +     F
Sbjct: 286 DDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G     E +IR+ L+E + I+ I+ LP ++F
Sbjct: 339 LLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L   K + +   V +I+A+  +        K   +     ++I D  ++
Sbjct: 392 FGTGIPTVILVL---KQKRQNTDVLVIDASKHFMKE----GKNNKLQASDIKRITDAVIN 444

Query: 459 REN-GKFSRMLDYRTF 473
           RE+  KFS+ +  +T 
Sbjct: 445 RESIDKFSQRVSKQTL 460


>gi|157372316|ref|YP_001480305.1| type I restriction-modification system, M subunit [Serratia
           proteamaculans 568]
 gi|157324080|gb|ABV43177.1| type I restriction-modification system, M subunit [Serratia
           proteamaculans 568]
          Length = 863

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/495 (19%), Positives = 190/495 (38%), Gaps = 64/495 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    TR  +  + +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTSEDIKTLN 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFED 117
                      +   ++   +   ST          +N R+ L ++    S   K +F+ 
Sbjct: 62  EEDTDTVEYVQSNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPTYKKLFDG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I          V+  IYE+L+ +F +  
Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNSNQGYDVLGYIYEYLLEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +        
Sbjct: 181 GKKAGEFYTPHEVSVLMSNIIAHELKH------KDTIKIYDPTSGSGSLLINIGEAFE-- 232

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             + K    +    QEL+  T+ +    +++R +++   +      + G TL +D     
Sbjct: 233 -KYAKNKDSITYFAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEEDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ + W+      +         RF  GL   +     FL
Sbjct: 287 DSDPQGSYYALHVDAVVSNPPYSQNWDPSFKESDPR-----YSRF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G     E +IR+ L+E + IE ++ LP ++FF
Sbjct: 340 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIETVIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L  +    +   V +++A+  +        K   +     ++I D  ++R
Sbjct: 393 GTGIPTVILVLRQK---RQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVINR 445

Query: 460 EN-GKFSRMLDYRTF 473
           E+  KFS+++   T 
Sbjct: 446 ESIDKFSQLVSKETL 460


>gi|104774034|ref|YP_619014.1| Type I restriction-modification system, modification subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423115|emb|CAI97854.1| Type I restriction-modification system, modification subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 532

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 116/485 (23%), Positives = 197/485 (40%), Gaps = 70/485 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------ALEPTRSA 54
           M E   + + L + ++  A+ L       ++ K IL     + L        A +  +  
Sbjct: 1   MAEENSTVS-LQSGLFAAADVLRSKMDANEYKKYILGIVFYKYLSDQQLYKLAEDAGKDD 59

Query: 55  VR-----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------- 101
           V      E Y         LE      GY      EY+ + + +     + +        
Sbjct: 60  VTLDVAQETYEDNLEEGDLLEEVKSELGYM--IGPEYTYTKILANANNGSFQLNQLKDAF 117

Query: 102 SYIASFSDNAKAIFEDFDF--SSTIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           + + S  ++ + +FEDFD         L+K    +  + K    +EL     P   + + 
Sbjct: 118 TQLESQGNSFEGLFEDFDLYSRQLGQNLQKQTDTIVGVIKAIGKLELV--NTPGDTLGDA 175

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F SE  + A +F TP++V  L   L L   D           T+YDP  G+G 
Sbjct: 176 YEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSNGMTVYDPAMGSGS 229

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +   +V +          +  +GQE+   T  +    M++ R++       ++ ++ 
Sbjct: 230 LLLNFKKYVPNSS-------RITYYGQEINTSTFNLARMNMILHRVDL-----ANQKLRN 277

Query: 279 GSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDG 334
           G TL +D    +   F   + NPP+ +KW+ DK  ++         RF   G LP  S  
Sbjct: 278 GDTLDEDWPAEEITNFDSVVMNPPYSQKWKADKGFLD-------DPRFSKYGVLPPKSKA 330

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ LP
Sbjct: 331 DYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGLP 383

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF  T+I T + +L   K +     V  I+A+  +  ++     +  +  +   +IL 
Sbjct: 384 ANLFHSTSIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKILK 436

Query: 455 IYVSR 459
            Y  R
Sbjct: 437 TYEER 441


>gi|253576957|ref|ZP_04854281.1| type I restriction-modification system [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843688|gb|EES71712.1| type I restriction-modification system [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 885

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 191/489 (39%), Gaps = 83/489 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + + L G    + +   IL    ++ +                   
Sbjct: 10  MAVKKSELYSSLWASCDALRGGMDASQYKDYILTLLFVKYVSDKF--------------- 54

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
              +         G SF    +  L+ +G+ N    ++  IA  ++  N + + ++  F+
Sbjct: 55  -KGVAYGDIEVPEGGSF----DDMLALIGNKNIGEEMDKIIAKLAEANNLRGVIDNAHFN 109

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEGA 174
               +L K       L ++   F  +           D ++ + YE+L+R F +E  +  
Sbjct: 110 DE-DKLGKGKEMVDKLSELLGIFRDLMPDFSRHSADGDDIIGDAYEYLMRNFATESGKSK 168

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V  +   ++                TLYDP CG+G  L  A           
Sbjct: 169 GQFYTPSEVSRILAKVVGIEHAKAGDT------TLYDPACGSGSLLIRAAEA-------- 214

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTG---- 289
             P  +  +GQE E  T  +    +++           +  I+ G ST S   F      
Sbjct: 215 -APVDVAIYGQEKEGTTAGLARMNLVLHN-------RATAEIKGGYSTFSDPQFKNPNDD 266

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLAN 344
              ++F + ++NPPF  K           H   E GRF G G  P   +G   +L+H+  
Sbjct: 267 GALRQFDFVVANPPFSDKNWT--------HGLKEYGRFDGYGDRPPRKNGDFAWLLHVIK 318

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G+AA++L    LF G A   E+ IR+ L++  LI+ I+ LP +LF+ T I 
Sbjct: 319 SLK----RNGKAAVILPHGVLFRGNA---EATIRQSLIDKGLIKGIIGLPANLFYGTGIP 371

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GK 463
             + ++     +ER G + +I+A+  +     +G K R + +    +I  ++  R     
Sbjct: 372 ACVIVIDKENADERDG-IFMIDASRDFI---KDGNKNR-LREQDVYKITTVFNQRIELPN 426

Query: 464 FSRMLDYRT 472
           +SR + Y  
Sbjct: 427 YSRFVPYDE 435


>gi|218261758|ref|ZP_03476493.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223772|gb|EEC96422.1| hypothetical protein PRABACTJOHN_02164 [Parabacteroides johnsonii
           DSM 18315]
          Length = 553

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/593 (19%), Positives = 208/593 (35%), Gaps = 88/593 (14%)

Query: 4   FTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLA 61
            T      L   +W+ A+DL G     DF   +L F  LR +    +E  R  +   Y  
Sbjct: 1   MTIKEQHELGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYISDNYIEAARKELGRDYPD 60

Query: 62  FGGSNIDL-------------------ESFVKVAGYSFYNTSE-------YSLSTLGSTN 95
                +                     +   ++     Y           Y L+   + +
Sbjct: 61  KAPEELKEHGVSTPLQLWYGENPADVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDD 120

Query: 96  TRNNLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145
               LE    YI   SF    + +F + + +S   +L     E+  LL K+    +    
Sbjct: 121 LLKTLEKGFKYIENESFDRAFQGLFSEINLNS--DKLGKNYDERNALLCKVITKIAEGIA 178

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
              T    ++ + YE+LI  F +   + A +F TP+ +  + + ++              
Sbjct: 179 QFST-DTDILGDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTHDPKSGPKKK 237

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           +  + D  CG+G  L +  + +   G           +GQE    T+ +    ML+  ++
Sbjct: 238 LENVLDFACGSGSLLLNVRHRMKANGGSIGK-----IYGQEKNITTYNLARMNMLLHGVK 292

Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                D    I  G +L  D              F   ++NPPF  +WE  +       +
Sbjct: 293 -----DSEFEIHHGDSLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPTE-------E 340

Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            G+  RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  
Sbjct: 341 MGKDFRFKNYGLAPKSAADFAFLLHGFHFLKQD----GTMAIILPHGVLFRGGA---EER 393

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR  LL++  I+A++ LP +LFF T I   + +L   K   +   V  INA+D     + 
Sbjct: 394 IRTKLLKDGNIDAVIGLPANLFFSTGIPVCILVLKKCK---KSDDVLFINASDKENFEK- 449

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            GKK+  +      +I+D Y  R+  +            R + +    R  + L+ +   
Sbjct: 450 -GKKQNKLQTKDIDKIIDTYKQRKEEER---------YSRPVSMDEIERNGYNLNISRYV 499

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
            +  +     L  +++       K          +        +  ++    K
Sbjct: 500 SIAKEDVKIDLLQVNKKLIELEGKIADASERHNKFLAELGLPLLTKSKEGETK 552


>gi|326569343|gb|EGE19403.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis BC8]
          Length = 545

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/580 (17%), Positives = 192/580 (33%), Gaps = 96/580 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W+ A+ L  +    ++  ++L F  L+ +  +    R               
Sbjct: 12  LNKLDQDLWRAADTLRKNLDAANYKHIVLGFIFLKYISDSFNDFRKKHALNLTNPDSETY 71

Query: 56  -------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------------- 95
                  + +Y       I+   +   A   FY   +     +   +             
Sbjct: 72  LDPALFDKAEYQQILNDEIEERDYY-TAENIFYVPQQARWENIKDNSKLNAGDELPWGGK 130

Query: 96  ------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                   ++    I   +   K + +          +     L  +   FS  +     
Sbjct: 131 FKNVSILLDDAFEAIEQENPKLKGVLQRIAGFGVPDEM-----LRGLIDLFSRTDFTRPM 185

Query: 150 VP--------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                       ++ ++YE+ + +F     +    + TP+ +V L   +L          
Sbjct: 186 YNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML---------- 235

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  +YDP  G+GGF       +     +      +  +GQE  P T  + V  M I
Sbjct: 236 -EPYSGRVYDPAMGSGGFFVQTDRFIQAHQGNRNA---ISVYGQESNPTTRKLAVMNMAI 291

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           R +  D         +   TL   L   K+  + ++NPPF             E   G  
Sbjct: 292 RGIPFDFGD------KPEDTLLNPLHIDKKMDFVMANPPFNM------KEWWSESLAG-D 338

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P   + ++ +L H+   L       G+ A++L++  +      SGE EIR+ +
Sbjct: 339 PRWAYGTPPQGNANLAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGEIRKNI 392

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +  DL+EA++ALP  LF  T I   +WI++  K    +G+V  INAT +           
Sbjct: 393 ITADLVEAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYMKDRV---L 447

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           R    D   +I D Y + +        +   F Y    +    +  F+L           
Sbjct: 448 RDFTVDDIAKISDTYHNWQKQD--GYENIPAFCYSA-TLDEIAKNDFVLTAGRYV---GA 501

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           +T             ++   + +Q       E  + E++K
Sbjct: 502 VTEEDDGVPFSDKMQELTACLNEQFKQERELEQQITENLK 541


>gi|296188045|ref|ZP_06856437.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|296047171|gb|EFG86613.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 529

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/590 (18%), Positives = 212/590 (35%), Gaps = 102/590 (17%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTR 52
            + +  ++ + +W  A +L G    +++   IL F   R L    E              
Sbjct: 1   MSNNLQTITSKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEKYLVGNNVIDVEKG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTN-----TRNNLESYIAS 106
            ++ + YL         +    ++    Y  +   +  +L +         ++ ++   +
Sbjct: 61  ESINDAYLKQAVGADLDDYLQDISLSLGYAIAPNDTWESLINKINDAQVIPSDYQTIFDN 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ NA          + IF D +   +    +  E+A  L  I K   GIE   D   D 
Sbjct: 121 FNKNAELNKEAVKDFRGIFNDINLGDSRLGSSTNERAKSLNNIVKLVDGIEYKGDDGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++    +            LYDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTSGVE-----KSDEFFNLYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +            +   GQEL   T+ +    +++  +  +     +
Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHDVSYNNMVLNN 287

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D   G         + F   ++NPP+  KW+ D+  +       +  RF
Sbjct: 288 A-----DTLESDWPDGPDGKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRF 335

Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L   S     F++H    L    N  G  AIVL    LF G A   E +IR+ L+
Sbjct: 336 SDYGKLAPASKADYAFILHSIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQTLI 388

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + ++ ++ LP +LF+ T+I T + +    +  +    +  I+A++ +      GK + 
Sbjct: 389 EKNYLDTVIGLPANLFYGTSIPTTILVFKKNRKTK---DILFIDASNDFEK----GKNQN 441

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +ND+   +I++ +  R++      +           +       F L+         + 
Sbjct: 442 NLNDENIDKIINTFKERKDVDKYAHVAS---------IEEIKENEFNLNIPRYVDTFEEE 492

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552
               L  +++    D               E    E+  + + K L VK 
Sbjct: 493 APIDLEEVNKQLEQD-------------NKEIAELEAEINEQLKILGVKI 529


>gi|120556287|ref|YP_960638.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120326136|gb|ABM20451.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 570

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/609 (16%), Positives = 194/609 (31%), Gaps = 115/609 (18%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-------- 51
           M         +L + +WK A+ L  +    ++  V+L    L+ +  A E          
Sbjct: 1   MNNTEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEELLERF 60

Query: 52  RSAVREKY----LAFGGSNIDLESFVKVAG--------YSFYNTSEYSLSTLGSTNT--- 96
           +    + Y      + G     ++ ++             F+       STL        
Sbjct: 61  KDQNDDIYYLPPEDYDGHEDYQQALLEELEILDYYREANVFWVPKPARWSTLKEKAVLPV 120

Query: 97  ---------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
                                 +N    I   +   K I                  L  
Sbjct: 121 GTVLWQDDAGNDVKLRSVSWLIDNALEEIEKSNAKLKGILNRISQYQL-----DNDKLLG 175

Query: 136 ICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   FS                    ++ ++YE+ + +F     +    + TP+ +V L 
Sbjct: 176 LINTFSDTSFTRPVFEGEKLSLHSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLI 235

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVP 242
             +L                 +YDP  G+GGF   +   + +  S       +    +  
Sbjct: 236 VEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIEEHASEQHYDAGEQKKHISV 284

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE  P T  +    M IR ++ +  +      +   T   D     R  + ++NPPF 
Sbjct: 285 YGQESNPTTWRLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPFN 338

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K               +  R+  G P   + +  ++ H+ + L      G  A ++ + 
Sbjct: 339 IK-------DWWSESLADDVRWKYGTPPKGNANFGWMQHMLHHLAPT---GSMALLLANG 388

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------- 415
           S   N      E EIR+ L+E DL+E +VALP  LF  T I   +W L+  K        
Sbjct: 389 SMSSNTNN---EGEIRKRLVEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGMVRNE 445

Query: 416 --EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
              +RR +   I+A +L +   R      R   +D   +I D + + + G+    +    
Sbjct: 446 KKRDRREEFLFIDARNLGFMRDRVL----RDFTNDDVAKIADTFHAWQRGEGYEDVA--- 498

Query: 473 FGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            G+ +   +    +  F+L        +                  +   + +Q      
Sbjct: 499 -GFCKSASLDEIKKHDFVLTPGRYVGAQEQ---EDDGEPFAEKMARLTGQLREQFAESDR 554

Query: 532 AESFVKESI 540
            E+ +K ++
Sbjct: 555 LEAEIKRNL 563


>gi|332983076|ref|YP_004464517.1| type I restriction-modification system, M subunit [Mahella
           australiensis 50-1 BON]
 gi|332700754|gb|AEE97695.1| type I restriction-modification system, M subunit [Mahella
           australiensis 50-1 BON]
          Length = 521

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/486 (21%), Positives = 181/486 (37%), Gaps = 70/486 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---------ALEPTRSAVREKY 59
           A L   IW  A +L G     DF + +L     R +                R       
Sbjct: 11  AELHRTIWNIANNLRGSVDGWDFKQYVLGMLFYRYISENITAYINAGEWAAGRPEFNYAK 70

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAI 114
           ++   +    E  V+  G  F+         + +      N    LE    +   +A+  
Sbjct: 71  ISDAEAEKIREDLVEAKG--FFILPSELFENVRARAKNDENLNETLERVFRNIEASAQGT 128

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + DF      L+            +   L ++  + + ++L            + YE+
Sbjct: 129 ESEPDFKGLFDDLDVNSNKLGSTVAKRNEKLAQLLDSIAEMKLGDYKDNTIDAFGDAYEY 188

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+  + S   +   ++ TP++V  L T L L     + K        +YDP CG+G  L 
Sbjct: 189 LMGMYASNAGKSGGEYYTPQEVSELLTRLTLVGKTEVNK--------VYDPACGSGSLLL 240

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                +       K    L   GQE+   T+ +C   M +  ++ D       NI  G T
Sbjct: 241 KFAKIL------GKDNVRLGFFGQEINITTYNLCRINMFLHDIDYDKF-----NIALGDT 289

Query: 282 LSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L+       + F   +SNPP+   W+ D D +          RF P   L   S   + F
Sbjct: 290 LTDPKHRDNEPFEAIVSNPPYSISWKGDSDPI-----LINDPRFAPAGVLAPKSKADLAF 344

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +MH    L       G AAIV     ++ G A   E +IR++L++N+ I+ I+ LP +LF
Sbjct: 345 IMHCLAWL----AANGTAAIVCFPGVMYRGGA---EKKIRQYLIDNNYIDCIIQLPDNLF 397

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+IAT + +L   K +        I+A+  +    N       +       IL+ +  
Sbjct: 398 YGTSIATCIMVLKKSKRDNST---LFIDASKEFVKATN----NNKLTQKNIETILNAFKD 450

Query: 459 RENGKF 464
           R++ ++
Sbjct: 451 RKDIEY 456


>gi|217980318|ref|YP_002364294.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500955|gb|ACK48927.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 567

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 95/562 (16%), Positives = 187/562 (33%), Gaps = 97/562 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57
           M +        L   +W  A+ L        +   +L    ++ +  A +  +  ++   
Sbjct: 1   MNQTEQQFLKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADI 60

Query: 58  ---KYLAFGGSNI-------------DLESFVKVAGYSFYNTSEYSLSTLGST------- 94
              ++  +                    +         F+  +E     L          
Sbjct: 61  ANPEHEYYLDPADYSEEELAEEIAIELEQRDFYTEKNVFWLPTESRWQFLQDNGPLVIGG 120

Query: 95  ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
                           +  +N    I   +   K +      S  I +      L ++  
Sbjct: 121 AELDINGKAKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSSLKIDQ----AKLNELIN 176

Query: 139 NFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             + I   H D     ++ ++YE+++ +F     +    F TP  +V L   ++      
Sbjct: 177 LIATIPFVHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMI------ 230

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252
                      +YDP  G+GGF   +   +       ++        +  +GQE    T 
Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERHAHEKQVDALTQKHKISIYGQEYNYTTW 285

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M IR L+ D  ++ +      ST +       R  + ++NPPF  K        
Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT---- 335

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                +    RF  G P   + +  ++ H+ + L      G +A ++ + S         
Sbjct: 336 ---GVDDNDPRFKYGQPPSGNANFAWMQHMLHHLAP---EGSQALLLANGSMSSTTNN-- 387

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGKV 422
            E  IR+ L+ENDLIE +VALP  LF  T I   +W L+  K             R+G+V
Sbjct: 388 -EGTIRQALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKNPRVDKAGRKLRGRKGEV 446

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480
             I+A +L           R  + +  +++ D++ + + G+    + Y    G+ +   +
Sbjct: 447 LFIDARNLGYMKDRV---LRDFSFEDIQKVADVFHAWKTGETVNGVTYEDQAGFCKSATL 503

Query: 481 LRPLRMSFILDKTGLARLEADI 502
               +  F+L          +I
Sbjct: 504 AEIAKHDFVLTPGRYVGAADEI 525


>gi|15839317|ref|NP_300005.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
 gi|9107964|gb|AAF85513.1|AE004079_4 type I restriction-modification system DNA methylase [Xylella
           fastidiosa 9a5c]
          Length = 525

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 123/562 (21%), Positives = 217/562 (38%), Gaps = 78/562 (13%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTR 52
           M+       A L   IW+ A DL G     DF   +L     R +   L       E   
Sbjct: 1   MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRA 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL------- 100
                 Y     ++ +      V    FY         + +      N    L       
Sbjct: 61  DDPDFDYAQLSDADAESGRAETVKEKGFYILPSELFVRVRAGAKCDDNLNETLSKVFANI 120

Query: 101 -ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELHPD 148
             S I S S+ + K +F+D D +S  ++L     ++   L K+ +       +  E    
Sbjct: 121 ERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGGFT 178

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                +  + YE+L++ + S   +   +F TP++V  L T + +     + K        
Sbjct: 179 DNTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK-------- 230

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L    N V   G           +GQE+   T+ +C   M +  +  + 
Sbjct: 231 VYDPACGSGSLLL---NFVKVLGHDQ---VRRGFYGQEINLTTYNLCRINMFLHNVNYEK 284

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL+       + F   +SNPP+  KW+ D +A+          RF P 
Sbjct: 285 F-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFAPP 334

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++N+
Sbjct: 335 GILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNN 387

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++A++ LP DLFF T IAT + +L   K +        ++A+ L       G K   + 
Sbjct: 388 YVDAVIQLPADLFFGTTIATCIIVLKKSKRDNAT---LFMDASSLCV---RSGTK-NKLT 440

Query: 446 DDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADI 502
              +++ILD + +R++ + F+R++D          +     ++    +    +  L  DI
Sbjct: 441 PAHQKKILDGFTARQDIEHFARLVDNSDIAANGYNIAVSSYIAHADTRESIDIKALNRDI 500

Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524
                        +D +   ++
Sbjct: 501 ARIVARQAELRKQIDAIVADLE 522


>gi|15676726|ref|NP_273871.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|7226064|gb|AAF41241.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis MC58]
 gi|316984502|gb|EFV63470.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
 gi|325140020|gb|EGC62549.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis CU385]
          Length = 514

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 189/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLIEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|332829719|gb|EGK02365.1| type I restriction-modification system, M subunit [Dysgonomonas
           gadei ATCC BAA-286]
          Length = 513

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/557 (19%), Positives = 202/557 (36%), Gaps = 83/557 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--------- 51
           M+E       L   +WK A ++ G+   +DF    L     + L   +E           
Sbjct: 1   MSEEQQRI--LKAQLWKMACEMRGNMNASDFMNFGLGLIFYKYLSERIEMFINDQLQNDN 58

Query: 52  -------RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS------EYSLSTLGSTNTRN 98
                       +         I+   +     Y F   S      ++ L  LG +    
Sbjct: 59  TDFRTIWTEGDEDIKQELRNVAIEDIGYFLEPKYLFSTLSADAKDGKFILEALGQSFKHI 118

Query: 99  NLESYIASFSDNAKAIFEDFDFSS-TIARL--EKAGLLYKICKNFSGIELHPDTVPDRVM 155
              +  A   D+ + +F+D D +S  + +   +K  L+  +      I+         ++
Sbjct: 119 EDSTLSADSEDDFQNLFDDVDLTSAKLGKTADDKNKLISNLLLALDEIDFCLKDTEIDIL 178

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE++I  F +   + A +F TP+ V  +   ++    +         +R +YDPTCG
Sbjct: 179 GDAYEYMIGEFAAGAGQKAGEFYTPQQVSKVLAQIVTADKE--------RVRNVYDPTCG 230

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L              K       +GQE  P T+ +    ML+     D        
Sbjct: 231 SGSLLLSV----------AKEGFAEFIYGQEKNPTTYNLARMNMLLHNKRYDKFE----- 275

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+ G TL  D F  + F   ++NPPF  +W  D+     +       R G  L   S   
Sbjct: 276 IRSGDTLEDDQFESEVFDAIVANPPFSAQWSADRKFNTDDR----FSRAGA-LAPKSKAD 330

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALP 394
             F++H+ + L      GG  A V     LF G     E +IRR+L+E  + I+AI+ LP
Sbjct: 331 YAFILHMIHHLHD----GGTMACVAPHGVLFRGA---SEGKIRRYLVETKNYIDAIIGLP 383

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +L  +K  +    V  I+A+  +  ++     +  +  +   +I++
Sbjct: 384 ANLFYGTSIPTCILVL--KKCRKEGDDVLFIDASKGFEKVKT----QNKLLPEHINKIVE 437

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            Y  R   +             +  +       F L+           T+ +   +    
Sbjct: 438 TYKRRAEIE---------KYSHKATIEEIAENDFNLNIPRYV-----DTFEEEEDIDIKA 483

Query: 515 WLDILKPMMQQIYPYGW 531
            +  +K +  Q      
Sbjct: 484 VMAEIKTLEAQRGELDK 500


>gi|121610476|ref|YP_998283.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
 gi|121555116|gb|ABM59265.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 535

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 118/566 (20%), Positives = 202/566 (35%), Gaps = 89/566 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           MTE       L + +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTE--QDQKQLGSILWNIADRLRGAMNADDFRDYMLSFLFLRYLSDNYEAATRKELGCDY 58

Query: 50  -----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--- 101
                  R A    +     S+ D       +   +    +Y   ++       + +   
Sbjct: 59  PALESEDRRAPLAVWYEQNPSDTDDFERQMRSKTHYVIRPKYLWGSIAEMARTQDKDLLR 118

Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
                 SYI   SF+     +F + + SS   +L     E+   L  I +  +   L   
Sbjct: 119 TLQESFSYIENESFASTFDGLFSEINLSS--EKLGKSYTERNAKLCSIIQEIAD-GLTKF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +V    + + YE+LI +F +   + A +F TP+ +  + +A++              + +
Sbjct: 176 SVDKDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISSILSAIVALDSQNPAAGKKKHLNS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +    +           I   +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGALLLNVRKQL-------GPNGIGRIYGQEKNITTYNLARMNMLLHGVK--- 285

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL  D             RF   ++NPPF  +W       +     G+
Sbjct: 286 --DSEFEIFHGDTLINDWDMLRESNPAKMPRFDAVVANPPFSYRW-------DPTGAMGD 336

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  IR 
Sbjct: 337 DVRFKNHGLAPKSAADFAFLLHGFHYLKQE----GVMAIILPHGVLFRGGA---EERIRT 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ ++ LP +LFF T I   + +L   K       V  INA + +      GK
Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GK 442

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           ++  +  +   +I+D Y  R   +              + +    +  + L+ +      
Sbjct: 443 RQNRLLLEHIDKIIDTYRFRNEEERYARC---------VSMEEIEKNDYNLNISRYISTA 493

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQ 525
                  L+    +  +DI K + + 
Sbjct: 494 QAEEEVDLAA-VNARLVDIEKEIEKA 518


>gi|325200488|gb|ADY95943.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis H44/76]
          Length = 513

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 189/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFENHHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ 
Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLIEEHIAEIVK 439

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 440 LFADKADVPH 449


>gi|126665697|ref|ZP_01736678.1| type I restriction-modification system methylation subunit
           [Marinobacter sp. ELB17]
 gi|126629631|gb|EBA00248.1| type I restriction-modification system methylation subunit
           [Marinobacter sp. ELB17]
          Length = 570

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 100/565 (17%), Positives = 185/565 (32%), Gaps = 114/565 (20%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------- 49
           M         +L + +WK A+ L  +    ++  V+L    L+ +  A E          
Sbjct: 1   MHNTEQQFLKALDDKLWKAADKLRANLDAANYKHVVLGLIFLKYVSDAFEERQEELLELF 60

Query: 50  -----------PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-- 96
                      P      EKY       +++  + + A   F+       +TL       
Sbjct: 61  KTDSDDNIYYLPREDFDDEKYQQALIEELEVLDYYREA-NVFWVPKPARWNTLKEKAVLP 119

Query: 97  ----------------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
                                  +N    I   +   K I                  L 
Sbjct: 120 VGTVLWQDDVGGDVKLRSVSWLIDNALEDIEKSNTKLKGILNRISQYQL-----DNDKLL 174

Query: 135 KICKNFSGIEL--------HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            +   FS              +     ++ ++YE+ + +F     +    + TP+ +V L
Sbjct: 175 GLINTFSDTSFTKPIFEGEKLELQSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTL 234

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPILV 241
              +L                 +YDP  G+GGF   +   +    S       +    + 
Sbjct: 235 IVEML-----------QPYSGRVYDPAMGSGGFFVSSDKFIEQHASEQHYDAAEQKKHIS 283

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQE  P T  +    M IR ++ +  +      +   T   D     R  + ++NPPF
Sbjct: 284 VYGQESNPTTWKLAAMNMAIRGIDFNFGK------KNADTFLDDQHPDLRADFVMANPPF 337

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             +               E  R+  G P   + +  +L H+ + L      G  A ++ +
Sbjct: 338 NIR-------DWWNESLTEDARWKYGTPPKGNANFGWLQHMLHHLAPT---GSMALLLSN 387

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT------ 415
            S   N      E EIR+ L+E DL+E +VALP  LF  T I   +W L+  K       
Sbjct: 388 GSMSSNTNN---EGEIRKRLVEEDLVECMVALPGQLFTNTQIPACIWFLTKDKANGAIRN 444

Query: 416 ---EERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                R+ ++  I+A +L +   R      R   ++   +I D + + + G+    +   
Sbjct: 445 EKKRGRQKELLFIDARNLGFMRDRVL----RDFTNEDIAKIADTFHAWQRGENYEDVA-- 498

Query: 472 TFGYRR-IKVLRPLRMSFILDKTGL 495
             G+ + + +    +  F+L     
Sbjct: 499 --GFCKSVSLDEIKKHDFVLTPGRY 521


>gi|229176526|ref|ZP_04303955.1| Type I restriction-modification system, M subunit [Bacillus cereus
           MM3]
 gi|228606963|gb|EEK64356.1| Type I restriction-modification system, M subunit [Bacillus cereus
           MM3]
          Length = 530

 Score =  287 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/487 (21%), Positives = 199/487 (40%), Gaps = 72/487 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLA-- 61
            A L + ++  A++L      +++   +L     + L   L            E+Y    
Sbjct: 1   MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTPE 60

Query: 62  ---------FGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111
                        +I  +    +     Y+    Y  + L +   +N  +  +   +   
Sbjct: 61  KQTQLYRDLLADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQ--LNDLNKAF 118

Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158
             +   +D F+     ++ K+  L            ++ K  + I++        V+ + 
Sbjct: 119 IDLSTKYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDIDVL--GHSGDVIGDA 176

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G 
Sbjct: 177 YEFLIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            + +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++ 
Sbjct: 231 LMLNIRNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRN 278

Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           G TL+KD  T + + +   L NPP+  KW  D   ++         R+G  L   S    
Sbjct: 279 GDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADF 333

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +
Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I T + IL   +T      V  I+A++ +T  +N    +  ++ +   +I++ Y
Sbjct: 387 LFFGTSIPTTVIILKKNRTTR---DVLFIDASNEFTKEKN----QNKLSKENIDKIVETY 439

Query: 457 VSRENGK 463
             RE+ +
Sbjct: 440 KKREDVE 446


>gi|300087356|ref|YP_003757878.1| type I restriction-modification system subunit M [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527089|gb|ADJ25557.1| type I restriction-modification system, M subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 523

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 202/562 (35%), Gaps = 76/562 (13%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSA 54
           MT    +       L   IW+ A D+ G     DF + +L     R +   L     R  
Sbjct: 1   MTNHNSTKEQERAALHRTIWQIANDMRGSVDGWDFKQYVLGMLFYRFISENLTSYLNREE 60

Query: 55  VREKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLGSTN-TRNNLESYIA--- 105
            R     F  + +  E         V    FY         +        NL   +A   
Sbjct: 61  RRSGNQDFDYTRLPDEQAEFGRADTVKEKGFYILPSELFVNVCGKARLDANLNETLATVF 120

Query: 106 ----------SFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DT 149
                        D+ K +F+D D       +T+ +  +   L ++ +    + L     
Sbjct: 121 RNIENSAKGADSEDDLKGLFDDLDVNSSKLGNTVEK--RNQKLTRLIEAIGELRLGNYSD 178

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  + YE L+  + S   +   +F TP++V  L   L       + K        +
Sbjct: 179 NTIDAFGDAYEFLMTMYASNAGKSGGEFFTPQEVSELLARLATVGKKEVNK--------V 230

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP CG+G  L      +                GQE+   T+ +C   M +  +  +  
Sbjct: 231 YDPACGSGSLLLKFAKILGKENVRIG------FFGQEINITTYNLCRINMFLHDINYNHF 284

Query: 270 RDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
                 I  G TL+       + F   +SNPP+  KWE D + +          RF P  
Sbjct: 285 E-----IAHGDTLTDPKHWDDEPFDAIVSNPPYSTKWEGDSNPL-----LINDPRFSPAG 334

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   S   + F MH+ + L       G AAIV     L+ G A   E +IR++L++N+ 
Sbjct: 335 VLAPKSKADLAFTMHMLSWLSTS----GTAAIVEFPGVLYRGGA---EQKIRKYLIDNNY 387

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ ++ LP DLFF   IAT + +L   K +    K   I+A+  +      G  +  + +
Sbjct: 388 IDTVIQLPPDLFFGVTIATCIIVLKKSKKD---NKTLFIDASTEFVR----GGNKNKLTE 440

Query: 447 DQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           D   +IL+ + +R + ++ ++++D +        +     ++    +  +  ++      
Sbjct: 441 DNLAKILEAFTNRTDVEYFAKLVDNKAIEENACNIAVSSYVAQKDTREAID-IQKLNAEI 499

Query: 506 KLSPLHQSFWLDILKPMMQQIY 527
                 Q+     +  ++  I 
Sbjct: 500 AGIVARQNELRKAIDEIVADIE 521


>gi|52079176|ref|YP_077967.1| Type I restriction modification system protein HsdMI [Bacillus
           licheniformis ATCC 14580]
 gi|52784543|ref|YP_090372.1| hypothetical protein BLi00744 [Bacillus licheniformis ATCC 14580]
 gi|52002387|gb|AAU22329.1| Type I restriction modification system protein HsdMI [Bacillus
           licheniformis ATCC 14580]
 gi|52347045|gb|AAU39679.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 530

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 195/487 (40%), Gaps = 72/487 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKY---- 59
            A L + ++  A++L      +++   +L     + L   L      +     E+Y    
Sbjct: 1   MAELHSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIAGESLEEYNTQD 60

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111
                   +     I  +    +     Y+    Y  S L +   +N    ++   +   
Sbjct: 61  KQTQLYMESLADEEIKNDLIETLVDTLGYDIEPKYLFSVLANQAKQNTF--HLNDLNKAF 118

Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158
             +   +D F+     ++ K+  L            ++ K  + + +        V+ + 
Sbjct: 119 IDLSTKYDQFNGLFDDVDLKSKKLGSDDPQRNITITEVLKKLNDVNVIEHNGD--VIGDA 176

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F SE  + A +F TP  V  +   +     +         + +++DPT G+G 
Sbjct: 177 YEYLISQFASEAGKKAGEFYTPHQVSDMMARIAAIGQED------KKLFSVFDPTMGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            + +  N++         P  +  HGQEL   T  +    +++  +  +  R     ++ 
Sbjct: 231 LMLNIRNYI-------NYPDSVKYHGQELNTTTFNLAKMNLILHGVNKEDMR-----LRN 278

Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           G TL+KD  T + + +   L NPP+  KW  D   ++         R+G  L   S    
Sbjct: 279 GDTLNKDWPTDEPYTFDAVLMNPPYSAKWSADTTFIDDSR----FNRYG-KLAPKSKADF 333

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +
Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I T + IL   ++      V  I+A+  +      GK +  ++ +   +I++ Y
Sbjct: 387 LFFGTSIPTTVIILKKNRSTR---DVLFIDASKEFIK----GKNQNKLSKENIDKIVETY 439

Query: 457 VSRENGK 463
             RE+ +
Sbjct: 440 KKREDVE 446


>gi|167912941|ref|ZP_02500032.1| type I restriction-modification system, M subunit [Burkholderia
           pseudomallei 112]
          Length = 536

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 115/562 (20%), Positives = 199/562 (35%), Gaps = 82/562 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           MTEF      L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTEFEK--QQLGKILWAIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAQKELGPDY 58

Query: 58  ------------KYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRN--NLES 102
                       +    G  +   E   ++     Y     Y    +          L  
Sbjct: 59  PTQLDSSVSTPLQLWYEGNLDDVPEFEKQMRRKVHYVIEPQYLWGNIAQMAREQSKYLLD 118

Query: 103 YI---------ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
            +          SF+   + +F + + +S   +L     E+   L KI    +   L   
Sbjct: 119 TLQKGFGYIETESFASTFRGLFSEINLTS--DKLGKNYDERNARLCKIINEIAK-GLTQF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F +   + A +F TP+ +  + +A++              + +
Sbjct: 176 STDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISSILSAIVTLDGQEPATGQRKHMDS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +  + +           I   +GQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRHRM-------GPHGIGKIYGQEKNITTYNLARMNMLLHGVK--- 285

Query: 269 RRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL  +    +        +F   ++NPPF  +WE  +         GE
Sbjct: 286 --DSEFEIFHGDTLLNEWDMLRETNPAKIPKFDAVVANPPFSYRWESTEA-------LGE 336

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G     E+ IR 
Sbjct: 337 DVRFKNYGLAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGV---EARIRT 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL++  I+ ++ LP +LFF T I   + +L   K       V  INA + +      GK
Sbjct: 390 KLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GK 442

Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           ++  +  +   +I+D Y  R E  ++SR +        +          ++        +
Sbjct: 443 RQNQLLPEHINKIIDTYQFRKEEARYSRRVGMEEIE--KKNDFNLNISRYVSTAEAEEEI 500

Query: 499 EADITWRKLSPLHQSFWLDILK 520
           +      +L  L Q   +   +
Sbjct: 501 DLAAVHAELVSLDQKIEMATKQ 522


>gi|325144135|gb|EGC66442.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240013]
 gi|325203906|gb|ADY99359.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240355]
 gi|325206332|gb|ADZ01785.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M04-240196]
          Length = 513

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 189/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + +   +   +TN +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNVAAKAHQNEELNTNLKEIFTAIESSAS 119

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++    I+ 
Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIADIVK 439

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 440 LFADKADVPH 449


>gi|256851078|ref|ZP_05556467.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260660504|ref|ZP_05861419.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|282933734|ref|ZP_06339089.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|297205944|ref|ZP_06923339.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus jensenii JV-V16]
 gi|256616140|gb|EEU21328.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548226|gb|EEX24201.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 115-3-CHN]
 gi|281302113|gb|EFA94360.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|297149070|gb|EFH29368.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus jensenii JV-V16]
          Length = 550

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/578 (16%), Positives = 211/578 (36%), Gaps = 79/578 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSAV 55
           S   +   +W  A +L G+   +++   IL F   R L             L+     +V
Sbjct: 2   SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLVKNDILDIEDGESV 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRNNLESYIASF-- 107
            + Y+         +    +A    Y    + + ++L           ++ +  +  F  
Sbjct: 62  NDAYVREASGEDLTDYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121

Query: 108 ----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                     S + + +F D +   +       ++A  + KI +    IE   +   D  
Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI- 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  IYE+LI +F +   +   +F TP +V  +   L+                 +YDPTC
Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLK-----GEPEEFEVYDPTC 235

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      V       K P ++  +GQE    T+ +    +++  +E       + 
Sbjct: 236 GSGSLLLT----VQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNA 291

Query: 275 NIQQGSTLSKDLF-------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326
           +  +      D             F   ++NPP+   W+ +++ +       +  RF   
Sbjct: 292 DTLEAD--WPDGLDAQGVDRPKTNFDAVVANPPYSAHWDNNENKL-------KDPRFSAY 342

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +     F++H    L       G  AIVL    LF G A   E  IR+ ++E +
Sbjct: 343 GKLAPKTKADYAFVLHGLYHLSPE----GTMAIVLPHGVLFRGAA---EGVIRQNIIEKN 395

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++A++ LP +LF+  +I T + +    +  +    +  I+A+  +      GK +  + 
Sbjct: 396 YLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEK----GKNQNKLT 448

Query: 446 DDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           ++   +I+  Y+ RE+  K++   +          +  P    ++        ++     
Sbjct: 449 EENIDKIISTYLKREDVDKYAHKAELDEIKENDYNLNIP---RYVDTFEPEPPVDLGKVA 505

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
            +L  ++Q    +  K +++ +      +  ++  +  
Sbjct: 506 DELEEVNQK-IAENKKELLEMLKELTTDDDDLRAQLDK 542


>gi|218677780|ref|ZP_03525677.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium
           etli CIAT 894]
          Length = 251

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 123/259 (47%), Positives = 163/259 (62%), Gaps = 17/259 (6%)

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           EL  E+  +C + ML+   +        +NI  G+TL++D    +RFHY LSNPP+G  W
Sbjct: 1   ELNGESFGICKSDMLVTGHDP-------ENIAFGNTLTQDAHKDRRFHYMLSNPPYGVDW 53

Query: 306 EKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           +K ++ +  E    G+ GRFG GLP+ISDG +LFL H+ +K+      G R  IV++ SP
Sbjct: 54  KKYQEPIRDEAATQGKDGRFGAGLPRISDGQLLFLQHMISKMRTD-EIGSRIGIVMNGSP 112

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           LF G AGSGESEIRRW+LE+D IEAIVALPTDLF+ T I TY+W+L+NRK  +RRGKVQL
Sbjct: 113 LFTGGAGSGESEIRRWMLESDWIEAIVALPTDLFYNTGIQTYVWLLTNRKERKRRGKVQL 172

Query: 425 INAT--DLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGK-----FSRMLDYRTFGYR 476
           I+A+    W  +R N G KRR I DD R  I  I+    NG       S++ D   FGYR
Sbjct: 173 IDASGERFWAPMRKNLGSKRREIRDDGRETITHIFHETANGGGPWSAVSKIFDASDFGYR 232

Query: 477 RIKVLRPLRMSFILDKTGL 495
            I+V RPLR++F      +
Sbjct: 233 EIRVERPLRLNFQSSPERI 251


>gi|110004783|emb|CAK99117.1| probable adenine-specific dna-methyltransferase hsdm subunit
           transmembrane protein [Spiroplasma citri]
          Length = 517

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 105/543 (19%), Positives = 204/543 (37%), Gaps = 84/543 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVR 56
            +       L + +W  +  L G  + +++ + IL     R L         +  +    
Sbjct: 5   EKQNVQQQQLFSKLWDISNTLRGIMEPSEYKEYILGLIFYRYLSDNVQSIIEKDLKIEWI 64

Query: 57  EKYLAFGGSNIDLESFVKVAGYS---FYNTSEYSLSTLGSTN---------TRNNLESYI 104
           +   +        +    +       +Y   EY    + +            R   E  I
Sbjct: 65  DYQTSLTDEKYRNDFLEVLYDNDSAGYYIEPEYLWQEIINKINIGKFDIFLLRKAFEKLI 124

Query: 105 A---SFSDNAK--AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
                +S   +   +F+  D  S  ++L     EK+ ++ K+    + I    +     +
Sbjct: 125 ESTIGYSSEKQFENLFDSVDLDS--SKLGKTEAEKSKIIAKVMLKINEINFEINESEIDI 182

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F SE  + A +F TP+ V  L   L+         +    I+T+YDPTC
Sbjct: 183 LGDAYEYLISKFASESVKAAGEFYTPQPVSKLLAKLV--------SQGKTEIKTVYDPTC 234

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +           I   +GQEL+  ++ +    M++  L+ +       
Sbjct: 235 GSGSLLLRVYKELK----------IGHLYGQELKTNSYNIARMNMMLHGLKYNK-----F 279

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332
           NI  G TL  D F G+ F   ++NPP+   W  ++  +  E       RF     L   +
Sbjct: 280 NIYNGDTLEDDGFKGQEFEIIVANPPYSSHWSANQKFLSDE-------RFSAYGKLAPKT 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+ ++  KL    +  G  A V+    LF G A   E  IR++++E + I+ I++
Sbjct: 333 KADFAFIQNMIYKL----SDNGVMAAVIPHGILFRGNA---ELIIRKYMIEKNWIDTIIS 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+ T+I T + ++   K       +  I+A+  +     +G K  + + +  + I
Sbjct: 386 LPVNMFYGTSIPTCIIVMKKCK---IDNSILFIDASKEFQ---KQGNKNTLTDKNIIKII 439

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
                 +   KFS ++D          +       + L+         +     +  L  
Sbjct: 440 NIFNKRKTIDKFSNLVD----------IEIIKENDYNLNIARYVDNTEEKEIINIKALQD 489

Query: 513 SFW 515
           +  
Sbjct: 490 NLI 492


>gi|210623094|ref|ZP_03293581.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275]
 gi|210153897|gb|EEA84903.1| hypothetical protein CLOHIR_01531 [Clostridium hiranonis DSM 13275]
          Length = 522

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 117/560 (20%), Positives = 211/560 (37%), Gaps = 78/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA-- 54
            +       L   IW  A++L G     DF   +L     R +   +     E  R A  
Sbjct: 5   NKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITNYINEGEREAGD 64

Query: 55  -------VREKYLAFGGSN-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                  + ++Y        I+ + F  +    F N            N    LE     
Sbjct: 65  TDFDYACLSDEYAEEAREGLIEEKGFFILPSELFCNV---RAKAKDDDNLNETLERVFRH 121

Query: 107 FSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVP 151
             ++AK          +F+DFD ++   +L     ++   L K+    + + L +     
Sbjct: 122 IEESAKGSESESDFAGLFDDFDVNN--NKLGSTVAKRNEKLCKLLDGIADMNLGYVKNHD 179

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + S   +   +F TP DV  L T L       + K        +YD
Sbjct: 180 IDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYD 231

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A   +       K       +GQE+   T+ +C   M +  +  D    
Sbjct: 232 PACGSGSLLLKAEKLL------GKDKIRNGFYGQEINITTYNLCRINMFLHDIGFDKF-- 283

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              NI    TL+       + F   +SNPP+  KW  + + +          RF P   L
Sbjct: 284 ---NIACEDTLTAPAHWDDEPFELIVSNPPYSIKWAGNDNPL-----LINDPRFAPAGVL 335

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++
Sbjct: 336 APKSKADLAFIMHSLSWLAP----NGTAAIVCFPGIMYRGGA---EQKIRKYLIDNNFVD 388

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            I+ LP++LFF T+IAT + +L   K++ R      I+AT+ +    N       +  + 
Sbjct: 389 CIIQLPSNLFFGTSIATCIMVLKKNKSDNRT---LFIDATNEFVKATN----NNHMTQEN 441

Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I+D + +R   K FS +  Y         +     +     +  +  ++ +   +++
Sbjct: 442 MDKIVDCFANRNEVKHFSHLATYDEVAENDYNLSVSTYVEAEDTREKIDIVKLNAEIKEI 501

Query: 508 SPLHQSFWLDILKPMMQQIY 527
               +      +  ++ +I 
Sbjct: 502 -VAREEALRKAIDEIIAEIE 520


>gi|325125903|gb|ADY85233.1| HsdM [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 376

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/415 (21%), Positives = 166/415 (40%), Gaps = 52/415 (12%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
               +  L   + +WK A+ L G+   +++  V+L    L+ +  A E     + +    
Sbjct: 1   MATKSKELNFEDKLWKAADALRGNMDASEYRNVVLGLIFLKYVSDAFEEKHQELLK---- 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAI 114
                   +     A   F+   +     +   +    +          I   + + + I
Sbjct: 57  SDFPEDAEDRDAYEAENIFWIPKQARWENIAGASKTQQIGEVIDQAMEAIEKENPSIQGI 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                 +     L+K+  L K+    S I++   ++    V+  +YE+ +++F S    G
Sbjct: 117 LSK---NYESPDLDKS-RLGKVVDLISDIDVGSKESQDRDVLGRVYEYFLQQFASAEGRG 172

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR +V     ++                 +YDP CG+GG    +   V +    
Sbjct: 173 GGEFYTPRSIVKTLVEMI-----------EPYKGRVYDPCCGSGGMFVQSEEFVKEHQGR 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                 L  +G+E  P T  +    + IR +++D          QG T + D+  G  F 
Sbjct: 222 I---DDLAVYGEESNPTTWKLAKMNLAIRGIDNDLGPH------QGDTFANDMHKGTHFD 272

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF  K    +       K  +  R+  G+P  S+ +  ++ H+ +KL+      
Sbjct: 273 YILANPPFNIKDWGGE-------KLKDDARWKYGVPPESNANYAWMEHIISKLQPD---- 321

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYL 407
           G+A  VL++  L   R    E  IR+ +LE+D I+AIVALP  ++ F T+    L
Sbjct: 322 GKAGFVLANGALSTSRKE--ELAIRKAVLEDDKIDAIVALPGANVLFNTDPCFSL 374


>gi|303230705|ref|ZP_07317452.1| type I restriction-modification system, M subunit [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514465|gb|EFL56460.1| type I restriction-modification system, M subunit [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 531

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 216/560 (38%), Gaps = 76/560 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   ++  A+ L G      +   +L     + L   L    + V + Y +    N  
Sbjct: 3   AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLE--ATVVKAYKSLDEYNTL 60

Query: 69  LES--------FVKVAGYSF---------YNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            +             +   F         Y+     L +  + + +NN    +   +   
Sbjct: 61  EKQTELYKSYILDDKSKEFFIATMSDTLGYHIEPQYLFSELANSVKNNSFELVHLKNAFV 120

Query: 112 K---------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +          +F+D D  S    +   ++   +  + K    I++        V+ + Y
Sbjct: 121 RLETAYTQFEGLFDDIDLDSKQLGVDANQRNITISDVIKKLDDIDVL--GHDGDVIGDAY 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ V  +   ++    ++          T+YDPT G+G  
Sbjct: 179 EYLIGEFAAGSGKKAGEFYTPQQVSDMMAQIVTIGQEST------PAFTVYDPTMGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++ +       P  +  HGQEL   T+ +    +++  + SD      +N+  G
Sbjct: 233 MLNVRKYLKN-------PDRVQYHGQELNVTTYNLARMNLILHEVNSD-----DQNLHNG 280

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD    + + +   + NPP+  KW  D   ++         R+G  L   S     
Sbjct: 281 DTLNKDWPVDEPYMFDSVVMNPPYSAKWSADPTFMDDAR----FNRYG-KLAPKSKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 336 FLLHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVIGMPANL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   +       V  I+A++ +T  +N    +  +  +  ++I+D Y 
Sbjct: 389 FFGTSIPTTVIILKKNRPGR---DVLFIDASNDFTKFKN----QNKLEPEHIKRIVDTYN 441

Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH---QS 513
           +R++ + +S +  +         +  P  +    ++  +  +      + ++      + 
Sbjct: 442 NRKSIEKYSYLASFDEIKDNDFNLNIPRYVDTFEEEAPIDMVALGKEMKSINEEEVKLEK 501

Query: 514 FWLDILKPMMQQIYPYGWAE 533
              D+L  +  Q     W  
Sbjct: 502 EIYDMLLQLECQNDDKDWLN 521


>gi|308189189|ref|YP_003933320.1| Type I restriction-modification system methyltransferase subunit
           [Pantoea vagans C9-1]
 gi|308059699|gb|ADO11871.1| Type I restriction-modification system methyltransferase subunit
           [Pantoea vagans C9-1]
          Length = 863

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 102/495 (20%), Positives = 193/495 (38%), Gaps = 64/495 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    T+  +  K +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKQGMTPKDIKALN 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFED 117
                          ++   +   ST          +N R+ L ++    S N K +FE 
Sbjct: 62  EEDADTVKYVQDNLGYFIAYDNLFSTWIDPTSEFDESNVRDALSAFSRLISPNYKKLFEG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I          V+  IYE+LI +F +  
Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNSNQGYDVLGYIYEYLIEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +    V   
Sbjct: 181 GKKAGEFYTPHEVSVLMSHIIAHELKH------KETIKIYDPTSGSGSLLINIGEAVE-- 232

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             + K    +    QEL+  T+ +    +++R +++   +      + G TL  D     
Sbjct: 233 -KYAKSKDSITYFAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ + W+      +         RF  GL   +     FL
Sbjct: 287 DSDPQGSYYTLHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G     E +IR+ L+E + I+ ++ LP ++FF
Sbjct: 340 LHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTVIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   K + +   V +++A+  +        K   +     ++I D  ++R
Sbjct: 393 GTSIPTVILVL---KQKRQNTDVLVVDASRHFMKE----GKSNKLQASDIKRITDAVINR 445

Query: 460 EN-GKFSRMLDYRTF 473
           E+  KFS+++  +T 
Sbjct: 446 ESIDKFSQLVSKQTL 460


>gi|268611918|ref|ZP_06145645.1| type I restriction-modification system methylation subunit
           [Ruminococcus flavefaciens FD-1]
          Length = 534

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/566 (17%), Positives = 209/566 (36%), Gaps = 70/566 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------PTR 52
             ++  L + +W  A+ L G     ++   +L     + L                  + 
Sbjct: 4   NENSKDLLSVLWAGADILRGKMDANEYKNYLLGIVFYKYLSDTFLTHVYDLLNNEKPESM 63

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--------SY 103
           +  +  Y     +    E    +     Y      + + L    ++N  +        ++
Sbjct: 64  AEAQAAYEEVYSTEDAEELLEDIKESYHYTIEPELTYTKLAEAASKNAFQREMLKKAFNH 123

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +         +F D D  ST       +++  + ++ K  +  +L        V+ + YE
Sbjct: 124 VEQSDPIFANLFADVDLYSTRLGSGEQKQSATVAEVVKKINEADLL--NHEGDVLGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F SE  + A +F TP+ V  + T + +   +            +YD   G+G  L
Sbjct: 182 YLIGQFASETGKKAGEFYTPQAVSQILTRVAIQGQED------KQGLLVYDAAMGSGSLL 235

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +A             P  +   GQEL   T+ +    M +  ++ + +      ++   
Sbjct: 236 LNARKFSH-------KPDYIRYFGQELSTTTYNLARMNMFLHGVDPENQT-----LRNAD 283

Query: 281 TLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           TL  D  T +   F   L NPP+  KW   +  +          RF     L   S    
Sbjct: 284 TLDADWPTDEETDFDMVLMNPPYSAKWSAAQGFLN-------DSRFSDYGVLAPKSKADY 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AI+L    LF G A   E +IR+ L+++  I A++ LP +
Sbjct: 337 AFLLHGFYHLKNT----GTMAIILPHGVLFRGAA---EGKIRQKLIDSGAIYAVIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+I T +  L   +       +  I+A+  +      GKK+  ++ +    I+++Y
Sbjct: 390 LFYNTSIPTTIIALKKNRDGR---DILFIDASQQFVK----GKKQNSMSPENIDHIIELY 442

Query: 457 VSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +R++ +  + +  Y         +  P  +     +  ++  +    +  +S    +  
Sbjct: 443 TARQDVEKEAHLATYEEIKANDYNLNIPRYVDTFEQEEQISLSDLASEFSDISAEMDTAA 502

Query: 516 LDILKPMMQQIYPYGWAESFVKESIK 541
            D++  M +        ++ + + +K
Sbjct: 503 TDLITQMGELTAADADTKNELADLMK 528


>gi|297581881|ref|ZP_06943802.1| type I restriction enzyme M protein [Vibrio cholerae RC385]
 gi|297533975|gb|EFH72815.1| type I restriction enzyme M protein [Vibrio cholerae RC385]
          Length = 832

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 185/487 (37%), Gaps = 72/487 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W + ++L G    + +   +L    ++ +                 +G
Sbjct: 1   MAIKKSDLYSSLWASCDELRGGMDASQYKDYVLFMLFIKYVSD--------------KYG 46

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSS 122
            S+          G SF +       +         +    I + +  A++ F DF+  +
Sbjct: 47  DSDDFAPPVTIPPGASFKDMVALKGKSDIGDKINTQIIQPLIDANTRLARSDFPDFNDPN 106

Query: 123 TIARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAE 175
              +L +       L  +   F   EL         D ++ + YE+L+R F S+  +   
Sbjct: 107 ---KLGEGQAMVDRLSNLIGIFQKPELDFSKNRAENDDILGDAYEYLMRHFASQSGKSKG 163

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++                T YDPTCG+G  L              +
Sbjct: 164 QFYTPSEVSRIMAKVVGISPANAV-----ASTTAYDPTCGSGSLL---------LKVAAE 209

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------ 289
               +   GQE++  T  +    M++           + NI QG+TL+   F        
Sbjct: 210 AGKHITLEGQEMDVTTAGLARMNMILH-------DFPTANILQGNTLASPKFKDGRKDGT 262

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              + + Y ++NPPF  K          +       RF  G P    G   +L+H+   +
Sbjct: 263 EVLRTYDYVVANPPFSDKTWSTGLTPASDAHQ----RFAWGEPPKKQGDYAYLLHIIRSM 318

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ A +L    LF G A   E+ IR  L+ + +++ I+ LP++LF+ TNIA  
Sbjct: 319 KST----GKGACILPHGVLFRGNA---EAVIREKLVRSGILKGIIGLPSNLFYGTNIAAC 371

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS 465
           + +L       R+G + +I+A+  +     +G K R + +    +I+D +       ++S
Sbjct: 372 ILVLDKENASARKG-IFMIDASKGFI---KDGAKNR-LREQDIHKIVDAFTKLAELPRYS 426

Query: 466 RMLDYRT 472
           RM+    
Sbjct: 427 RMVPLTE 433


>gi|194467963|ref|ZP_03073949.1| type I restriction-modification system, M subunit [Lactobacillus
           reuteri 100-23]
 gi|194452816|gb|EDX41714.1| type I restriction-modification system, M subunit [Lactobacillus
           reuteri 100-23]
          Length = 549

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 104/508 (20%), Positives = 183/508 (36%), Gaps = 81/508 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTRSA 54
             A  + + +W+ A  L  +   +++   IL F   R L    E               +
Sbjct: 2   NKAQEITSQLWEMANRLRSNMDASEYRNYILGFMFYRYLSEHQEKSMVENKLIDVAEGQS 61

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTR-----NNLESYIASFS 108
           V + Y          +   ++A    Y  +  Y+ +T+           ++ +  + SF+
Sbjct: 62  VNDAYKEQASGEDLNDYLEEIASSLGYAIAPEYTWATIVDKVNNNTIAPSDYQDMLDSFN 121

Query: 109 DNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            N             IF+D +  ++    +   +A  L  I      IE   D     ++
Sbjct: 122 HNLNLNRNAKMDFHGIFDDMNLGNSRLGNSTSARAKALTDIVNLVDQIEYK-DENGHDIL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IY +LI  F     + A +F TP  V  +   L+    D   K        +YD  CG
Sbjct: 181 GDIYTYLIAEFAGNSGKKAGEFYTPHQVSEILAKLVTLNLDPGIKNPE-----VYDFACG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L    + V            L   GQEL   T+ +    +++  +           
Sbjct: 236 SGSLLLTVQDQV--------PNRRLKYAGQELNTTTYNLARMNLMMHDVRYQNMT----- 282

Query: 276 IQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           ++   TL  D   G           F   ++NPP+  +W       +      +  RF  
Sbjct: 283 LKNADTLEMDWPDGIDEHGVDHPHSFDMVVANPPYSARW-------DNNDNKLKDPRFKE 335

Query: 327 --GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   +     FL+H    L+      G  AIVL    LF G     E++IR+ LLE 
Sbjct: 336 YGALAPKTKADYAFLLHGLYHLKQD----GTMAIVLPHGVLFRGAK---EAQIRKALLEK 388

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+AI+ LP +LF+ T I T + +L   K  +    V  I+A+  +      GK + ++
Sbjct: 389 NQIDAIIGLPANLFYSTGIPTVVLVLKKNKENK---DVLFIDASKNFEK----GKNQNVL 441

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRT 472
             +   +I+  Y  R++      +    
Sbjct: 442 RKEDIDKIIGTYKERKDVDKYAHVATID 469


>gi|145630827|ref|ZP_01786605.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
 gi|144983709|gb|EDJ91169.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
          Length = 555

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 95/573 (16%), Positives = 191/573 (33%), Gaps = 87/573 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L    W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 20  LNELDEKFWVSADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPGNPLY 79

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                    E+Y     + ++   +   A   F+  +      L   +   N  + +   
Sbjct: 80  LDRTFFDTEEEYQEALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 137

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             FS  AK I + FD       +L+               L  +   FS       T   
Sbjct: 138 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTNFTRPTYNG 197

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 198 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 246

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +A    +      +  +GQE  P T  +    M IR +
Sbjct: 247 YSGRVYDPAMGSGGFFVQTERFIAAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 303

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 304 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 350

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 351 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 404

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 405 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRQGEVLFIDARQIGYMKDRV---LRDF 459

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I +   + +    S   + +    +   +       F+L         E +  
Sbjct: 460 TADDIAKIANTLHAWQK---SNGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 516

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 517 GVPFTEKMQNLTALLKEQFEKSTKLEAEIKKNL 549


>gi|255011913|ref|ZP_05284039.1| type I restriction-modification system methylation subunit
           [Bacteroides fragilis 3_1_12]
 gi|313149747|ref|ZP_07811940.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138514|gb|EFR55874.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 512

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 181/490 (36%), Gaps = 67/490 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGS 65
           +     +F+W  A  L G      + + I P    +R+    +      V E  + + G 
Sbjct: 16  TLDEFKSFLWAAATHLRGQIDAAGYKEYIFPLLFFKRISDVYDEQFEGFVCEGGVEYAGK 75

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDN----------AK 112
            ++        G        +      + N  N L      I   +             +
Sbjct: 76  QVEDLPIRIPEGAH------WRDVREVTENVGNKLVEAFIAIEQANPAKEMDGRKIGGLE 129

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF   D  +  A++  + ++  + ++FS   L     P   M   YE+L+ +F  +   
Sbjct: 130 GIFGPKDGWTNKAKMPDS-IITSLIEDFSKYTLSLKACPADEMGQAYEYLVGKFADDAGN 188

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A++F T R VV L   +L           P    ++YDPTCG+GG L   ++++ + G 
Sbjct: 189 TAQEFYTNRTVVQLMAEIL----------QPQPNESIYDPTCGSGGMLVKCLDYLRNKGD 238

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
                  +   GQE+   T ++    + +  +E         +I    TL    F     
Sbjct: 239 E---WQSVQVFGQEVNGLTSSIARMNLYLNGVE-------DFSIVCADTLEHPAFLDGSH 288

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   L+NPP+  K         ++  N + GR   G P        F+ H+   +  
Sbjct: 289 LRKFDIVLANPPYSIKEWN-----REKFMNDKWGRNFLGTPPQGRADYAFIQHILASMN- 342

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GR AI+L    LF       E +IR+ L+ +D +EA++ L  +LF+ + +   + 
Sbjct: 343 --EKNGRCAILLPHGILFR----QEEKDIRKSLVLSDSLEAVIGLGPNLFYNSPMEACIL 396

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENG 462
             +  K +  + K+  INA +     R  G+    + +   ++IL  + +       +  
Sbjct: 397 FCNKNKPQHLKDKIIFINAIN--EVTRKNGE--SYLEEKHIKKILSAFYNNSDIPQFKET 452

Query: 463 KFSRMLDYRT 472
                +    
Sbjct: 453 IDINDICNNE 462


>gi|21226531|ref|NP_632453.1| type I restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
 gi|20904801|gb|AAM30125.1| type I restriction-modification system methylation subunit
           [Methanosarcina mazei Go1]
          Length = 576

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 103/582 (17%), Positives = 196/582 (33%), Gaps = 97/582 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L N +W+ A+ L  +    ++  V+L    L+ +  A E  +  + E +      NI
Sbjct: 9   LNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNI 68

Query: 68  ---------DLESFVKV------------AGYSFYNTSEYSLSTLGS------------- 93
                      E++ +                 F+       + L               
Sbjct: 69  YYLPREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQD 128

Query: 94  ---TNTR--------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
               + +        +N    I   +   K I               A  L  +   FS 
Sbjct: 129 EQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRISQYQL-----DADKLIGLINEFSL 183

Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
              +         +     ++ ++YE+ + +F     +    + TP+ +V L   +L   
Sbjct: 184 TSFNNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 240

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEP 249
                         +YDP  G+GGF   +   +         +  +    +  +GQE  P
Sbjct: 241 --------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP 292

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKD 308
            T  +    M+IR ++ +  +      +   +   D     R  + ++NPPF    W  +
Sbjct: 293 TTWKLAAMNMVIRGIDFNFGK------KNADSFLDDQHPDLRADFVMTNPPFNMKDWWHE 346

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K A +        G      P   + +  +++H+   L      G  A ++ + S   N 
Sbjct: 347 KLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT---GSMALLLANGSMSSNT 403

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQ 423
                E EIR+ L+E DL+E +VALP  LF  T I   +W L+  K       +RRG+V 
Sbjct: 404 NN---EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVL 460

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
            I+A  L           R   D+  +++ D + + +  ++S   +   F +    +   
Sbjct: 461 FIDARKLGYMKDRV---LRDFKDEDIQKLADTFHNWQQ-EWSEENNQAGFCFSA-DLALI 515

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +  F+L        EA+     L     +     LK   ++
Sbjct: 516 RKNDFVLTPGRYVGAEAEEDDGILFADKMAVLTSQLKEQFEE 557


>gi|260495161|ref|ZP_05815289.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_33]
 gi|260197218|gb|EEW94737.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_33]
          Length = 520

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 123/563 (21%), Positives = 214/563 (38%), Gaps = 86/563 (15%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EP 50
           M        A L   IW  A DL G     DF + +L     R +   L         E 
Sbjct: 1   MNNKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEA 60

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
             S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N
Sbjct: 61  GNSDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFINVRRKADKDENLNVTLDTIFKN 119

Query: 111 A-------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151
                         K +F+D D +S   +L     ++   L  +      ++L       
Sbjct: 120 IENSANGTESESDLKGLFDDIDVNS--NKLGGTVVKRNENLVNLINGVGDMKLGDYQENT 177

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YD
Sbjct: 178 IDAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYD 229

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L      +       K        GQE+   T+ +C   M +  ++ D    
Sbjct: 230 PACGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF-- 281

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L
Sbjct: 282 ---DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVL 333

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+
Sbjct: 334 APKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYID 386

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            I+ LP +LF+ T+IAT + +L   K      KV  I+A+  +  + N       + +  
Sbjct: 387 CIIQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKH 439

Query: 449 RRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEAD 501
              I++ +  REN ++ S ++D     Y +I V     +S             +  +E +
Sbjct: 440 IDDIVEKFTKRENIEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELN 493

Query: 502 ITWRKLSPLHQSFWLDILKPMMQ 524
               ++    +    +I K + +
Sbjct: 494 KEIERIVVREEELRKEIDKIIAE 516


>gi|121609378|ref|YP_997185.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
 gi|121554018|gb|ABM58167.1| type I restriction-modification system, M subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 526

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 112/497 (22%), Positives = 187/497 (37%), Gaps = 71/497 (14%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA 54
           M     +  A L   IW+ A DL G     DF   +L     R +   L     E  R+A
Sbjct: 1   MNNSKETERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTAYLNEQERNA 60

Query: 55  V--REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIA------ 105
                +Y A   S  +      VA   FY    +    +        NL   ++      
Sbjct: 61  GDPEFEYAALNDSGAEFGRAETVAEKGFYILPSHLFDNVRKQARLDANLNETLSRVFADI 120

Query: 106 SFSDNAKAIFEDF-----DFSSTIARL-----EKAGLLYKICKNF-----SGIELHPDTV 150
             S N     +DF     D     ++L     ++   L K+         +         
Sbjct: 121 ESSANGADSEDDFKGLFDDLDVNSSKLGPTVAKRNEKLVKLLDAIGDLPLTSAPGKFSDN 180

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  + YE+L++ + S   +   +F TP++V  L   + +     + K        +Y
Sbjct: 181 TIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSELLARITVVGKTEINK--------VY 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L      +                GQE+   T  +C   M +  +  +   
Sbjct: 233 DPACGSGSLLLKFAKVLGHDAVRQG------FFGQEINLTTFNLCRINMFLHDVNYEKF- 285

Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               N+  G TL+       + F   +SNPP+  +W+ D + +          RF P   
Sbjct: 286 ----NVAHGDTLTDPAHWDDEPFEAIVSNPPYSIRWDGDANPL-----LINDPRFAPAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ +
Sbjct: 337 LAPKSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLIDNNYV 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP DLFF T IAT + +L   K +        ++A+  +      G K   + D 
Sbjct: 390 DTVIQLPPDLFFGTTIATCIIVLKKSKRDNAT---LFVDASAEFM---RSGNK-NKLTDA 442

Query: 448 QRRQILDIYVSRENGKF 464
            +++ILD Y+ R N   
Sbjct: 443 HQQKILDAYIERRNIDH 459


>gi|306826261|ref|ZP_07459595.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431537|gb|EFM34519.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 519

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 109/493 (22%), Positives = 181/493 (36%), Gaps = 69/493 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M         L   IWK A+++ G     DF + IL     R +    +       E   
Sbjct: 1   MMSEQVQRQELHRKIWKIADEVRGAVDGWDFKQYILGILFYRFISENFKTYIEGGDESIN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y       I  E          Y      L +      R N        + + K IF+D 
Sbjct: 61  YEEISEDLITPEVRDDAIKTKGYFIMPSQLFSSVVKAARQN-----EHLNTDLKDIFDDI 115

Query: 119 ------------------DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155
                             D  +   +L     E+   L  I +  + ++          +
Sbjct: 116 ESSAIGYASEHDIKGLFDDVDTRSNKLGSTVPERNQRLTLILEGIASLDFGNFEDNHIDL 175

Query: 156 -SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+LI  + S   +   +F TP+ V  L   +++   +   K +      +YDP C
Sbjct: 176 FGDAYEYLISNYASNAGKSGGEFFTPQSVSKLLARIVMLGKNEKNKIN-----KIYDPAC 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A     +             +GQE+   T+ +    M +  +  D       
Sbjct: 231 GSGSLLLQAKKQFNEHIIEDG------FYGQEINMTTYNLARMNMFLHNINYDKFS---- 280

Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
            I++G+TL        + F   +SNPP+  KW    D            RF P   L   
Sbjct: 281 -IERGNTLLDPKHVNDKPFDAIVSNPPYSIKWIGSDDPT-----LINDDRFAPAGVLAPK 334

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F+MH  + L       GRAAIV      + G A   E +IR++L++N+ +EA++
Sbjct: 335 SKADFAFIMHSLSYLSNK----GRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVEAVI 387

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + IL+  K       +  ++A+  +    N      ++ ++   +
Sbjct: 388 QLPDNLFFGTSIATCILILAKNKP---TTDILFVDASKQFKKETN----NNVLTEENIEK 440

Query: 452 ILDIYVSRENGKF 464
           ILD    +EN  +
Sbjct: 441 ILDSVEKKENEDY 453


>gi|291288564|ref|YP_003505380.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885724|gb|ADD69424.1| N-6 DNA methylase [Denitrovibrio acetiphilus DSM 12809]
          Length = 521

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 100/552 (18%), Positives = 196/552 (35%), Gaps = 65/552 (11%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W +A  L G  + +++  V+L    L+      E  +  +  +        ++      
Sbjct: 14  LWDSANKLRGSVEPSEYKHVVLSLIFLKFASDKFEERKKELIAEGKEKYTDMVE----FY 69

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                FY   E   S +   + ++N+        S +   +   K    D  FS     L
Sbjct: 70  TMRNVFYLPEESRWSHIKKNSKQSNIALIVDTALSTVEKNNAALKGALPDNYFSRLG--L 127

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E +  L  +    S I+   D     ++  +YE+ + +F     +G  +F TP+ +V+L 
Sbjct: 128 ETSK-LAALIDTISNIDTLKDK-ERDIVGKVYEYFLSKFALAEGKGKGEFYTPKSIVNLI 185

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++                 +YDP CG+GG    +M  +     + K    +  +GQEL
Sbjct: 186 AEMI-----------EPYKGKIYDPCCGSGGMFVQSMKFIDAHKGNRK---DVSIYGQEL 231

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    + IR + ++             T   D F   +  Y ++NPPF      
Sbjct: 232 TAATYKLAKMNLAIRGISANLGEIGK------DTFLNDQFPDLKADYIMANPPFN----- 280

Query: 308 DKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            +       +     R+ G   P + + +  +++H+ +KL    +  G A  +L++  L 
Sbjct: 281 -QKDWRAGTELTSDPRWNGYETPPVGNANYGWILHMVSKL----SENGVAGFILANGALS 335

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG------ 420
            G     E +IR+ ++EN+L+EAI+ LP ++F+ TNI+  LWI++  K E          
Sbjct: 336 GGG---DEYKIRKKIIENNLVEAIIILPQNMFYTTNISVTLWIINKNKKERVVNIPDSTR 392

Query: 421 -------KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                  +V  ++             K    ++D  ++    + + +  +F    D    
Sbjct: 393 EYRSREKEVLFMDLRQEGEPFEK---KYIQFHEDHIKRFARTFHTWQTKQFHDEFDNVPE 449

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
                         F L  +                  +S   D  + +  +        
Sbjct: 450 YCYSATFDEIKAKDFSLVPSKYIEFVNRDEDIDFDEKMRSLKDDFTELLKGEEKSKAELL 509

Query: 534 SFVKESIKSNEA 545
              KE     E 
Sbjct: 510 KVFKELGYEIEL 521


>gi|284055706|pdb|3KHK|A Chain A, Crystal Structure Of Type-I Restriction-Modification
           System Methylation Subunit (Mm_0429) From
           Methanosarchina Mazei.
 gi|284055707|pdb|3KHK|B Chain B, Crystal Structure Of Type-I Restriction-Modification
           System Methylation Subunit (Mm_0429) From
           Methanosarchina Mazei
          Length = 544

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 176/518 (33%), Gaps = 95/518 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              L N +W+ A+ L  +    ++  V+L    L+ +  A E  +  + E +      NI
Sbjct: 10  LNDLDNQLWRAADKLRSNLDAANYKHVVLGLIFLKYVSDAFEERQQELTELFQKDDDDNI 69

Query: 68  ---------DLESFVKV------------AGYSFYNTSEYSLSTLGS------------- 93
                      E++ +                 F+       + L               
Sbjct: 70  YYLPREDYDSDEAYQQAIAEELEIGDYYTEKNVFWVPKTARWNKLRDVITLPTGSVIWQD 129

Query: 94  ---TNTR--------NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
               + +        +N    I   +   K I               A  L  +   FS 
Sbjct: 130 EQGEDVKLRSVSWLIDNAFDDIEKANPKLKGILNRISQYQL-----DADKLIGLINEFSL 184

Query: 143 IELHP--------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
              +         +     ++ ++YE+ + +F     +    + TP+ +V L   +L   
Sbjct: 185 TSFNNPEYNGEKLNLKSKDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEML--- 241

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEP 249
                         +YDP  G+GGF   +   +         +  +    +  +GQE  P
Sbjct: 242 --------EPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP 293

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKD 308
            T  +    M+IR ++ +  +      +   +   D     R  + ++NPPF    W  +
Sbjct: 294 TTWKLAAMNMVIRGIDFNFGK------KNADSFLDDQHPDLRADFVMTNPPFNMKDWWHE 347

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K A +        G      P   + +  +++H+   L      G  A ++ + S   N 
Sbjct: 348 KLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPT---GSMALLLANGSMSSNT 404

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-----ERRGKVQ 423
                E EIR+ L+E DL+E +VALP  LF  T I   +W L+  K       +RRG+V 
Sbjct: 405 NN---EGEIRKTLVEQDLVECMVALPGQLFTNTQIPACIWFLTKDKNAKNGKRDRRGQVL 461

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I+A  L           R   D+  +++ D + + + 
Sbjct: 462 FIDARKLGYMKDRV---LRDFKDEDIQKLADTFHNWQQ 496


>gi|260903741|ref|ZP_05912063.1| type I restriction-modification system, M subunit [Brevibacterium
           linens BL2]
          Length = 523

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 118/561 (21%), Positives = 211/561 (37%), Gaps = 76/561 (13%)

Query: 1   MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPT 51
           M   T     A L   IW+ A DL G     DF   +L     R +   L       E  
Sbjct: 1   MAPTTKEAQRAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYLNKNEHD 60

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIAS-FS- 108
              V   Y     S+ +      VA   FY       + +      + NL   +   F+ 
Sbjct: 61  AGEVSFDYRLAADSDAEFARDEVVAEKGFYILPSDLFANVRDRAAGDENLNETLERVFNN 120

Query: 109 -----------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151
                      D+ K +F+D D +S   +L     ++   L K+      + L   +   
Sbjct: 121 IEASAMGTDSEDDIKGLFDDLDVNS--NKLGSTVAKRNQKLVKLLDAIGDLPLGRWEDNS 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+L++ + +   +   ++ TP++V  L   + +     + K        +YD
Sbjct: 179 IDLFGDAYEYLMQMYAANAGKSGGEYYTPQEVSELLARITVAGKKQVNK--------VYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L      +               +GQE+   T+ +    M +  +       
Sbjct: 231 PAVGSGSLLLKFDKVLGKNNVRQG------FYGQEINLTTYNLARINMFLHDVN-----Y 279

Query: 272 LSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              N+  G TL+       + F   +SNPP+  KW+ D + +          RF P   L
Sbjct: 280 ADFNLAHGDTLTDPQHWDDEPFEAIVSNPPYSIKWDGDANPL-----LINDERFAPAGVL 334

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+ + L       G AAIV     L+ G A   E +IR++L++N+ I+
Sbjct: 335 APKSKADLAFTMHMLSWL----AVNGTAAIVEFPGVLYRGGA---ERKIRQYLVDNNYID 387

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP DLFF T IAT + +L   K   + G V  I+A+  +   +  G K   + ++ 
Sbjct: 388 TVIQLPPDLFFGTTIATCILVLKKSK---KTGDVLFIDASAEF---KRVGNK-NKLLEEH 440

Query: 449 RRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADIT-W 504
           + +IL+ + +RE    F+ ++           +     +     +    +A L A+I   
Sbjct: 441 QARILEAFTTREPEDYFTTVVSNEDIAANDYNIAVSSYVEAEDTREEVDIAELNAEIARI 500

Query: 505 RKLSPLHQSFWLDILKPMMQQ 525
                  ++   +I+  +   
Sbjct: 501 VARQAELRTAIDEIVADLEGA 521


>gi|315648620|ref|ZP_07901717.1| type I restriction-modification system, M subunit [Paenibacillus
           vortex V453]
 gi|315275999|gb|EFU39347.1| type I restriction-modification system, M subunit [Paenibacillus
           vortex V453]
          Length = 530

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 198/496 (39%), Gaps = 70/496 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTRSAVREKY 59
            A L + ++  A++L      +++   +L     + L   L        + ++     + 
Sbjct: 1   MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESKEEYNTQE 60

Query: 60  LA-------FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
                         ++ +    +     Y+     L  + +   + N+   +   +    
Sbjct: 61  KQTQLYRSLLADKEVEKDLIDTLVDTLGYDIGPDYLFNVLTNQAKQNIFQ-LNDLNKAFI 119

Query: 113 AIFEDFD-FSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +   +D F+     ++            +   + ++ K  + I++        ++ + Y
Sbjct: 120 DLSTKYDQFNGLFDDVDLTSKKLGSDDQQRNITITEVLKKLNDIDVI--GHNGDIIGDAY 177

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G  
Sbjct: 178 EFLISQFASEAGKKAGEFYTPHEVSDMMARIATIGQED------KKLFSVFDPTMGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++ G
Sbjct: 232 MLNVRNYL-------NHPDNVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNG 279

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD  T + + +   L NPP+   W  D   ++         R+G  L   S     
Sbjct: 280 DTLNKDWPTDEPYTFDSVLMNPPYSANWSSDDTFLDDSR----FNRYG-KLAPKSKADFA 334

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 335 FLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANL 387

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T+I T + IL   +T      V  I+A+  +T ++N    +  ++++   +I++ Y 
Sbjct: 388 FYGTSIPTTVIILKKNRTTR---DVLFIDASHEFTKVKN----QNNLSEEHIDKIVETYK 440

Query: 458 SRENGKFSRMLDYRTF 473
            REN +    +     
Sbjct: 441 RRENVERYAHVATFEK 456


>gi|30022540|ref|NP_834171.1| Type I restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
 gi|29898098|gb|AAP11372.1| Type I restriction-modification system methylation subunit
           [Bacillus cereus ATCC 14579]
          Length = 468

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 197/487 (40%), Gaps = 72/487 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY---- 59
            A L + ++  A++L      +++   +L     + L   L            E+Y    
Sbjct: 1   MAELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYDTQE 60

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFSDNA 111
                   +    +I  +    +     Y+   +Y  + L +   +N  +  +   +   
Sbjct: 61  KQTQLYRESLADEDIKNDLIETLVDTLGYDIELDYLFNVLTNQAKQNTFQ--LNDLNKAF 118

Query: 112 KAIFEDFD-FSSTIARLE-KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNI 158
             +   +D F+     ++ K+  L            ++ K  + +++        V+ + 
Sbjct: 119 IDLSTKYDQFNGLFDDVDLKSKKLGADDQQRNITITEVLKKLNDVDVL--GHNGDVIGDA 176

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G 
Sbjct: 177 YEFLIGQFASEAGKKAGEFYTPHEVSVMMARIAAIGQED------KKLFSVFDPTMGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            + +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++ 
Sbjct: 231 LMLNIQNYI-------NHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRN 278

Query: 279 GSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           G TL+KD  T + + +   L NPP+  KW  D   ++         R+G  L   S    
Sbjct: 279 GDTLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADF 333

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +
Sbjct: 334 AFLLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPAN 386

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+I T + IL   +       V  I+A+  +      GK +  +  +   +I++ Y
Sbjct: 387 LFFGTSIPTTVIILKKNRATR---DVLFIDASKEFIK----GKNQNKLFKEHIDKIVETY 439

Query: 457 VSRENGK 463
             RE+ +
Sbjct: 440 KKREDVE 446


>gi|228984123|ref|ZP_04144309.1| Type I restriction-modification system, M subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228775651|gb|EEM24031.1| Type I restriction-modification system, M subunit [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 530

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/485 (21%), Positives = 196/485 (40%), Gaps = 68/485 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV----REKY---- 59
              L + ++  A++L      +++   +L     + L   L      V     E+Y    
Sbjct: 1   MTELNSKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLEKVVEVADESLEEYNTQE 60

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIAS 106
                        +I  +    +     Y+     L  + +   + N      L      
Sbjct: 61  KQVQLYRELLADEDIKSDLIETLVDTLGYDIEPNYLFNVLTNQAKQNTFQLTELNKAFID 120

Query: 107 FS---DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            S   D    +F+D D  S        ++   + ++ K  + +++        V+ + YE
Sbjct: 121 LSTRYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDVDVM--GHNGDVIGDAYE 178

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI +F SE  + A +F TP++V  +   +     +         + +++DPT G+G  +
Sbjct: 179 FLIGQFASEAGKKAGEFYTPQEVSDMMACIAAIGQED------KKLFSVFDPTMGSGSLM 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   ++         P  +  HGQEL   T+ +    +++  ++ +  R     ++ G 
Sbjct: 233 LNIRKYI-------SHPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGD 280

Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL+KD  T + + +   L NPP+  KW  D   ++         R+G  L   S     F
Sbjct: 281 TLNKDWPTDEPYTFDSVLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADFAF 335

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P++LF
Sbjct: 336 LLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPSNLF 388

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + IL   +T      V  I+A++ +      GK +  ++     +I++ Y  
Sbjct: 389 FGTSIPTTVIILKKNRTTR---DVLFIDASNEFDK----GKNQNKLSPKYINKIVETYKK 441

Query: 459 RENGK 463
           REN +
Sbjct: 442 RENVE 446


>gi|210135043|ref|YP_002301482.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210133011|gb|ACJ08002.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 527

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 124/567 (21%), Positives = 210/567 (37%), Gaps = 80/567 (14%)

Query: 2   TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRS 53
                S     L N IWK A +L G     DF + +L     R +   +      E  + 
Sbjct: 6   NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKR 65

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYI-ASFSD-- 109
                Y        +      +    F+        + L +  +  +L   +   F++  
Sbjct: 66  DPSFDYAKLSDEEAERAREHLIEEKGFFIPPSALFCNALKNAPSNEDLNVTLQNIFNEIE 125

Query: 110 ----------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
                     N K +F D D +S     +   + G L KI +   G++L         V 
Sbjct: 126 KSSLGTPSEENVKGLFADLDVNSNKLGSSHKNRVGKLTKILQAIGGMQLGDYLKSGIDVF 185

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG
Sbjct: 186 GDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHGQESVNK--------VYDPCCG 237

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      + D              GQE+   T+ +C   M +  +          +
Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286

Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL        + F   +SNPP+  KW  D   +          RF P   L   +
Sbjct: 287 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNSPL-----LINDERFSPAGVLAPKN 341

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   E++IR +L++ ++I+ ++A
Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIA 394

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L   K ++       I+A+  +     EGKK   + +  R +I
Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFV---KEGKK-NKLKERNREKI 447

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L  Y+ R+  K    L           + R     + L        E       +  L+ 
Sbjct: 448 LQTYIERKEIKHFCALAN---------IERIKENDYNLSVNRYVEQEDTKEIIDIKALN- 497

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539
               +I + + +Q       E  +KE 
Sbjct: 498 ---SEISQIVEKQSALRNSLELIIKEL 521


>gi|117676179|ref|YP_863755.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117615003|gb|ABK50456.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 567

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 106/585 (18%), Positives = 194/585 (33%), Gaps = 101/585 (17%)

Query: 1   MTE-FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M E        L   +W  A+ L      + +   +L    ++ +  A    +  ++   
Sbjct: 1   MNELEQEFLKDLEKKLWNAADKLRATLDASQYKHAVLGLIFVKYVSDAFSMRQEEIKADL 60

Query: 57  -----EKYLAFGGSNIDLESFVKVA----------GYSFYNTSEYSLSTLGST------- 94
                E YL     + D  +    A             F+  +E     L          
Sbjct: 61  TNPEHEYYLDPADFSEDELAEEIAAELEVRDFYTEKNVFWLPTESRWKFLQDNGPMVIGG 120

Query: 95  ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
                           +  +N    I   +   K +      S  I +      L ++  
Sbjct: 121 ADLVIDGKTKKITSVGHLIDNALEGIERDNQKLKGVLNKHYASLKIDQ----AKLNELIN 176

Query: 139 NFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             + I  +  +     ++ +IYE+ + +F     +    F TP  +V L   ++      
Sbjct: 177 LIATIPFNHKSLNSKDILGHIYEYFLGQFALAEGKKGGQFYTPASIVSLIVEMI------ 230

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252
                      +YDP  G+GGF   +   +    +  +I        +  +GQE    T 
Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERRANQKEIDPLTQKQRISIYGQEYNYTTW 285

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M IR L+ D  ++ +      ST + D     R  + ++NPPF  K        
Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNDQHPDLRADFIMANPPFNMKEWNT---- 335

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                +    R+  G P   + +  ++ H+   L      G +A ++ + S         
Sbjct: 336 ---GVDDNDPRWVYGTPPSGNANFAWMQHMLYHLAPD---GSQALLLANGSMSSTTNN-- 387

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKV 422
            E EIR  L+ENDL+E +VALP  LF  T I   +W L+  K            +R+G+V
Sbjct: 388 -EGEIRAALVENDLVECMVALPGQLFTNTQIPACIWFLAKNKKARTDKSGRKLRDRKGEV 446

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480
             I+A +L           R    D  +++ D+Y + + G     + Y    G+ +   +
Sbjct: 447 LFIDARNLGYMKDRV---LRDFTQDDIQKVADLYHAWKTGAEVNGIAYEDQAGFCKSATL 503

Query: 481 LRPLRMSFILDKTGL----ARLEADITWRKLSPLHQSFWLDILKP 521
               +  F+L           L+  I + +      S   D    
Sbjct: 504 EEIKKHDFVLTPGRYVGATEELDDGIPFGEKMATLTSKLSDQFAE 548


>gi|319954804|ref|YP_004166071.1| type i restriction-modification system, m subunit [Cellulophaga
           algicola DSM 14237]
 gi|319423464|gb|ADV50573.1| type I restriction-modification system, M subunit [Cellulophaga
           algicola DSM 14237]
          Length = 905

 Score =  286 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 115/579 (19%), Positives = 215/579 (37%), Gaps = 89/579 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W++ + L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKSELYSSLWESCDALRGSMDASQYKDYVLVMLFIKYISDKW--------------- 45

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +           G SF + +    ST         + + IA+ ++ AK  F DF+  + 
Sbjct: 46  -AGQPYAPITIPKGSSFADMTALKGSTDIGDQINKKILAPIAAANNLAK--FPDFNDPTK 102

Query: 124 IARLEK-AGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +   ++    L  +   F    L         D ++ + YE L+R F ++  +    F T
Sbjct: 103 LGSDKEMIDTLDALIGIFENPALDFSKNKADGDDILGDAYEFLMRHFATQSGKSKGQFYT 162

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P +V     +++   +     +      T+YDPTCG+G  L              +    
Sbjct: 163 PSEVSRTMASIIGINNVDTNSD-----ITVYDPTCGSGSLL---------LKVGTEAKSK 208

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-------KRF 292
           +  +GQE +  T  +    M++         + +  I+QG+TLSK LF         K F
Sbjct: 209 VTLYGQEKDATTAGLARMNMILH-------DNPTAEIKQGNTLSKPLFEDPKLEANLKTF 261

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
            + ++NPPF  K   +   +       +  RF   G+P   +G   FL+H+   L+    
Sbjct: 262 DFVVANPPFSDKRWSNGLTLPD----DKYNRFADYGIPPSKNGDYAFLLHIVRSLK---- 313

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+ AI+L    LF G A   ESEIR  L++   I+ I+ LP +LF+ T I   +  + 
Sbjct: 314 RNGKGAIILPHGVLFRGNA---ESEIRTNLIKKGFIKGIIGLPANLFYGTGIPAAIIFID 370

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
                 R+G + +I+A   +     +G K R + +   R+I D++ +++  K FS     
Sbjct: 371 KENAANRKG-IFMIDAGKGFI---KDGNKNR-LREQDIRRITDVFAAQKEVKGFS----- 420

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
                R + +    +  + L+               +    +    DI   +   I    
Sbjct: 421 -----RMVSIEDISKNEYNLNIPRY-----------IDNQEKEDIQDIEAHLKGGIPIAD 464

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
             +      +     K+L  K +  +    I     KD 
Sbjct: 465 IDDLSNFWEVYPTLRKSLFEKINDKYSNLTIENEQIKDE 503


>gi|315231357|ref|YP_004071793.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Thermococcus barophilus MP]
 gi|315184385|gb|ADT84570.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Thermococcus barophilus MP]
          Length = 515

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 114/549 (20%), Positives = 218/549 (39%), Gaps = 67/549 (12%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YL 60
             T +   L   + K A+ +        +   IL    L+RL    E       EK    
Sbjct: 14  NKTVTREELERVLKKAADLIRTRVD---YK-YILLLLFLKRLSDEWEKEFEGYVEKLVKE 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR---NNLESYIASF---SDNAKAI 114
                  +  +    + Y+    SEY    L   +      NL   +      + N + +
Sbjct: 70  GLDRKTAEKIALQDKSAYTIAYPSEYLWRKLREKDIEKLPQNLSEALKKLAELNPNLRGV 129

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
            + FDF   +   + A +L ++ + FSG++L        V+ + YE ++R F  + ++  
Sbjct: 130 VDRFDFMEFMLHRDNAEILKQLFELFSGLDLRNA--SPDVLGDAYEWILRYFAPQKAKE- 186

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +  TPR+V+ L   +L           P     +YDP  G+GG L  +  HV +     
Sbjct: 187 GEVYTPREVIKLLVEIL----------DPRPGEEVYDPALGSGGMLIGSYLHVKEKFGES 236

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
           +   +   +GQE+ P T+A+    M+I  ++          +  G TL +  F      K
Sbjct: 237 EAKKLF-LYGQEVNPTTYAIAEMNMMIHGIK-------DAKLAVGDTLLRPAFKEGEKLK 288

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   ++NPP+ +    ++   + E +     RF  G P  +     ++ H+        
Sbjct: 289 RFDVVIANPPWNQDGYGEETLKKAEFREE---RFKYGYPPNNSADWAWIQHMLAS----A 341

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GR  IV+ +  LF G A   E +IR  +++ DL+E ++ LP  LF+ T     + I 
Sbjct: 342 RDNGRIGIVIDNGALFRGGA---EKKIRSRIVKEDLLECVILLPEKLFYNTGAPGAIMIF 398

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           +  K +ER+GKV  INA+  +       +K   + +    +I+  Y   E+ +       
Sbjct: 399 NKAKPKERKGKVLFINASLEYEKHPEV-RKLNRLGEKNIEKIVKAYEEFEDVE------- 450

Query: 471 RTFGYRRIKVLRPLRMS--------FILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
              G+ R+  L  ++ +        ++        ++    W +L  +++    +I + +
Sbjct: 451 ---GFARVVSLDEIKENDFNLNVTLYVFPMEEEEEIDVKAEWEELKKINEE-LAEIDEKI 506

Query: 523 MQQIYPYGW 531
            + +   G+
Sbjct: 507 EEYLRELGY 515


>gi|298375955|ref|ZP_06985911.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_19]
 gi|298266992|gb|EFI08649.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_19]
          Length = 549

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 117/553 (21%), Positives = 204/553 (36%), Gaps = 80/553 (14%)

Query: 4   FTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLA 61
            T      L   +W+ A+DL G     DF   +L F  LR L    +E T+  +   Y  
Sbjct: 1   MTIKEQHELGKTLWRIADDLRGSMMADDFRDYMLSFLFLRYLSDNYIEATKKELGGDYPD 60

Query: 62  FGGSNIDL-------------------ESFVKVAGYSFYNTSE-------YSLSTLGSTN 95
                +                     +   ++     Y           Y L+   + +
Sbjct: 61  KAPEELKERGVSTPLQLWYRENPEDVLDFEKQMRRKVHYVIEPDYLWTNIYELARTQNDD 120

Query: 96  TRNNLES---YIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145
               LE    YI   SF    + +F + + +S   +L     E+  LL K+    +    
Sbjct: 121 LLKTLEKGFKYIENESFDRAFQGLFSEINLNS--DKLGKNYEERNALLCKVITKIAEGIA 178

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
              T    ++ + YE+LI  F +   + A +F TP+ +  + + ++              
Sbjct: 179 QFST-DTDILGDAYEYLIGEFAAGSGQKAGEFYTPQQLSSILSGIVTLDTQDPKSGMKKK 237

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           +  + D  CG+G  L +  + +   G +         +GQE    T+ +    ML+  ++
Sbjct: 238 LERVLDFACGSGSLLLNVRHRMKANGGNIGK-----IYGQEKNITTYNLARMNMLLHGVK 292

Query: 266 SDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                D    I  G +L  D              F   ++NPPF  +WE  +       +
Sbjct: 293 -----DSEFEIHHGDSLLNDWDMLNEMNPAKKVEFDAIVANPPFSYRWEPTE-------E 340

Query: 318 NGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            G+  RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E  
Sbjct: 341 MGKDFRFNNYGLAPKSAADFAFLLHGFHFLKQD----GTMAIILPHGVLFRGGA---EER 393

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR  LL++  I+A++ LP +LFF T I   + +L   K   +   V  INA+D     + 
Sbjct: 394 IRTKLLKDGNIDAVIGLPANLFFSTGIPVCILVLKKCK---KSDDVLFINASDKENFEK- 449

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            GK++  +      +I+D Y  R+  + +SR +           +     +S   +   +
Sbjct: 450 -GKRQNKLRTKDIDKIIDTYKQRKEEERYSRPVSMDEIERNGYNLNISRYVSIAKEDVKI 508

Query: 496 ARLEADITWRKLS 508
             L+ +    +L 
Sbjct: 509 DLLQVNKKLIELE 521


>gi|261403056|ref|YP_003247280.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus vulcanius M7]
 gi|261370049|gb|ACX72798.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus vulcanius M7]
          Length = 523

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 104/550 (18%), Positives = 213/550 (38%), Gaps = 59/550 (10%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
              N +WK A+ L    +   +  V+L    LR L C     R  + ++           
Sbjct: 12  EFENQLWKVADKLRKKMEVHQYKYVVLGLIFLRALTCRFYERRKEIEDELSNPNSELYTE 71

Query: 70  ESFVKV---AGYSFYNTS---------EYSL--STLGSTNTRNNLESYIA----SFSDNA 111
           +  ++        FY +           +      + S N    +++ I      + D  
Sbjct: 72  DPELRKMILEDKDFYLSEGVLYLPKETRWDYFVENVMSPNIGEIIDTAIEILEEKYPDRL 131

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K +       S +   + A     +   FS I    +     V   IYE+ + +F     
Sbjct: 132 KNVIPKIYAQSPLDNHDYA----YLINKFSEISFGKEYKVKDVFGRIYEYFLGKFTEVEG 187

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TPR +  L   +L                T++DP CG+GGF   A+  +   G
Sbjct: 188 KLGGKFYTPRSLTKLIVDVLDI-----------KGGTIFDPACGSGGFFVSALEKLEGEG 236

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +GQ+ +P  + +    ++IR  E D        I+ G +   D F    
Sbjct: 237 IDINEL---SIYGQDSDPMAYRLTKMNLIIRGAEGD--------IRIGDSYHDDKFMNMV 285

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F Y ++NPPF      D + ++ +     +G     +P  ++ + ++++H     +    
Sbjct: 286 FDYVVANPPFNDSEW-DSNRIKPDDPRLRIGNKKVPVPPNNNANYMWILHFIYHTKS--- 341

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A  V+++  L  G     E EIR+ ++ENDL+  IVA P  LF+  ++   LW + 
Sbjct: 342 -NGKAGFVMANGALSAGNV---EGEIRKAIIENDLVYGIVACPPKLFYNVSLPVSLWFIR 397

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             K +  +GKV  INA +L+   +   +++ I+ ++   +I+D +   E+G+    ++  
Sbjct: 398 KEKPDYMKGKVLFINAKNLY---KQISRRQNILTEEHINKIVDKFKMLESGENEEKIN-- 452

Query: 472 TFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             G+ ++  +    +  ++L       ++ +        +    + + L+ ++ +     
Sbjct: 453 ELGFAKVATIDEIAKNGYVLTPGRYVGVKIEDDGIPF-EVKMKEYSEELRGLLDEEEKLR 511

Query: 531 WAESFVKESI 540
                V +++
Sbjct: 512 EKVKEVLDAL 521


>gi|28199936|ref|NP_780250.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182682691|ref|YP_001830851.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa M23]
 gi|28058067|gb|AAO29899.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa Temecula1]
 gi|182632801|gb|ACB93577.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa M23]
 gi|307578974|gb|ADN62943.1| type I restriction-modification system, M subunit [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 527

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 121/510 (23%), Positives = 207/510 (40%), Gaps = 78/510 (15%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTR 52
           M+       A L   IW+ A DL G     DF   +L     R +   L       EP  
Sbjct: 1   MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQEPRT 60

Query: 53  SA--VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100
               V   Y     +  +      V    FY         + +      N    L     
Sbjct: 61  GNGNVDFDYAQLSDAGAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120

Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146
               S I S S+ + K +F+D D +S  ++L     ++   L K+ +       +  E  
Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVPKRNEKLVKLLEAIGDLPLTSSEGG 178

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +  + YE+L++ + S   +   +F TP++V  L T + +     + K      
Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG+G  L    N V   G           +GQE+   T+ +C   M +  +  
Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +       +I  G TL+       + F   +SNPP+  KW+ D +A+          RF 
Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334

Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   L   S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++
Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           N+ ++A++ LP DLFF T IAT + +L   K +        ++A+ L+      G K   
Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440

Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           ++   +++ILD + +R++ + F+R++D   
Sbjct: 441 LSTAHQKKILDGFTARQDIEHFARLVDNSD 470


>gi|319410193|emb|CBY90529.1| putative type I restriction-modification system M protein
           [Neisseria meningitidis WUE 2594]
          Length = 514

 Score =  286 bits (732), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|30995437|ref|NP_439439.2| type I modification enzyme [Haemophilus influenzae Rd KW20]
          Length = 576

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 94/567 (16%), Positives = 191/567 (33%), Gaps = 87/567 (15%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------------ 55
            +W +A+ L       ++  ++L    L+ +  +    +  +                  
Sbjct: 47  KLWASADKLRKQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELSTPENPLYLDRTFF 106

Query: 56  --REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI---ASFSDN 110
              E+Y     + ++   +   A   F+  +      L   +   N  + +     FS  
Sbjct: 107 DTEEEYQEALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWGGKFSGV 164

Query: 111 AKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP------- 151
           AK I + FD       +L+               L  +   FS       T         
Sbjct: 165 AKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNGEPVHLG 224

Query: 152 -DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++ ++YE+ + RF     + +  + TP+ +V L   +L                 +Y
Sbjct: 225 AKDILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML-----------EPYSGRVY 273

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP  G+GGF       +     +      +  +GQE  P T  +    M IR ++ D  +
Sbjct: 274 DPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGIDYDFGK 330

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +       + ++     K+  + ++NP F  K               +  R+  G P 
Sbjct: 331 YNA------DSFTQPQHIDKKMDFIMANPHFNDKEW-------WNESLADDPRWAYGTPP 377

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  DL+E +
Sbjct: 378 KGNANFAWLQHMIYHLSP----NGKIALLLANGSM--SSQTNNEGEIRKAIINADLVECM 431

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R    D   
Sbjct: 432 VALPGQLFTNTKIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFTADDIA 486

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRKLSP 509
           +I D   + +    S   + +    +   +       F+L         E +      + 
Sbjct: 487 KIADTLHAWQT---SDGYEDQAAFCKSATLEEIKNNDFVLTPGRYVGTAEQEDDGVPFAE 543

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFV 536
             Q+    + +   +        +  +
Sbjct: 544 KMQNLTALLKEQFAKSAELEAEIKKNL 570


>gi|304387862|ref|ZP_07370036.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338127|gb|EFM04263.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 514

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 190/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+K      + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTKPKLKDSKPFDAVVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASSFFKKETN----NNVLTEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|229015568|ref|ZP_04172563.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1273]
 gi|228745715|gb|EEL95722.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1273]
          Length = 497

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 105/535 (19%), Positives = 192/535 (35%), Gaps = 69/535 (12%)

Query: 18  NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL--------AFGGSNIDL 69
            A DL G     +F   IL     R L   +E   +++  +                   
Sbjct: 1   MANDLRGQMDAYEFKDYILGLIFYRYLSEKVESRANSLLAEDELSFAEAWGNGEYREDLQ 60

Query: 70  ESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNAKAIFEDFDFSST 123
           E  +   GY     Y  S +        N   ++E           +        DF + 
Sbjct: 61  EYLINELGYIITPQYLFSTFVKEIELGANGNFDIEMLQNGVKAIEASTMGADSQEDFENL 120

Query: 124 IARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
              ++            ++ L+ K+  N + I    D V   V+ + YE++I +F +   
Sbjct: 121 FDDMDLNSSKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYEYMISQFAANAG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A +F TP+ V  +   ++              I+ +YD TCG+G  L           
Sbjct: 181 KKAGEFYTPQQVSRILAKIVTAGKTE--------IKDVYDGTCGSGSLLLRVGKEAK--- 229

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                  +   +GQE    T+ +    ML+  +          +I+   TL +     KR
Sbjct: 230 -------VYNYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNADTLEEPQHLDKR 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+  KW  D    + E  +         L   S     F+ H  + L     
Sbjct: 278 FEAIVANPPYSAKWSADDKFQDDERFSNY-----AKLAPKSKADFAFVQHFIHHLAD--- 329

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWIL 410
             G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++FF T+I T + +L
Sbjct: 330 -NGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFFGTSIPTCILVL 385

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLD 469
             +K  +    V  I+A++ +      GK +  + D+   +I++ Y+SRE   K+S    
Sbjct: 386 --KKCRKHDDNVIFIDASNEFEK----GKNQNHLADEHVEKIVNTYLSRETFDKYSYAAT 439

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                     +  P  +    ++  +   E       +         ++     +
Sbjct: 440 LDEIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLEAIDEEIAKVDEELAAYFKE 494


>gi|126090304|ref|YP_001041759.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125999935|gb|ABN64004.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 863

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 190/494 (38%), Gaps = 68/494 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    T   +  + +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFLTNQGMTPEDIKALD 61

Query: 65  SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFSD----NAKAIFED 117
            +         +   ++   +    +     S    +N+   +++FS     N K +F+ 
Sbjct: 62  EDDAETREYVQSNLGYFIAYDNLFSTWIDPKSDFDESNVRDALSAFSRLIHTNHKKLFDG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I          V+  IYE+LI +F +  
Sbjct: 122 IFTTLETGLSKLGESPSKRTKAISDLLHLIKSI-PMNSNQGYDVLGYIYEYLIEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + +                  +YDPT G+G  L    N     
Sbjct: 181 GKKAGEFYTPHEVSLLMSHITAHELQH------KENIEIYDPTSGSGSLLI---NIGQAL 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286
             +      +  + QEL+  T+ +    +++R ++       + NI  + G TL  D   
Sbjct: 232 AQYADKADNITYYAQELKANTYNLTRMNLIMRGIK-------ATNIKTRNGDTLEDDWPY 284

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                    +        +SNPP+ + W+      +         RF  GL   +     
Sbjct: 285 FDESDPKETYNALYVDAVVSNPPYSQSWDPTHKESDPR-----YSRF--GLAPKTKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G   IVL    LF G     E +IR  L+EN+ I+ I+ LP ++
Sbjct: 338 FLLHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGKIRTQLIENNHIDTIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L   K + +   V +++A+  +        K   +     ++I D  +
Sbjct: 391 FFGTGIPTVILVL---KQKRQNTDVLIVDASKHFIKE----GKNNKLQASDIKRITDAVI 443

Query: 458 SREN-GKFSRMLDY 470
           +R++  KFS++++ 
Sbjct: 444 NRQSCPKFSQLVEK 457


>gi|225850848|ref|YP_002731082.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
 gi|225645479|gb|ACO03665.1| type I restriction enzyme M protein (HsdM) [Persephonella marina
           EX-H1]
          Length = 898

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 124/615 (20%), Positives = 225/615 (36%), Gaps = 98/615 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L N +W+ A  L G    + +   +L    ++ +                 + 
Sbjct: 1   MAIKKTQLYNHLWEAANALRGGMDASQYKDYVLTILFVKYVTD--------------KYK 46

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-----SFSDNAKAIFEDF 118
           G   + + F+   G SF          L     + N+   I         +N      D 
Sbjct: 47  GDPYNEDGFIVPEGGSF--------DDLIEAKGKKNIGERINIVLSKLAEENGLKGVIDI 98

Query: 119 DFSSTIARL----EKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171
                  +L    EK   L K+   F   EL+        D ++ ++YE+ +++F +E  
Sbjct: 99  VDFDDDTKLGTGKEKVDRLTKLIGIFENPELNFSRNRSDGDDILGDVYEYFMKKFATEAG 158

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP +V  +   ++          +    +T YDPTCG+G  L    +      
Sbjct: 159 KSKGQFYTPAEVSRVMAKIIGVEK------ATSPDQTAYDPTCGSGSLLLKVAD------ 206

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-- 289
              + P  +  +GQE++     +    M++              I QG+TLS   F    
Sbjct: 207 ---EAPVKISLYGQEIDINVANIARMNMILHG-------RPDAEIAQGNTLSHPKFKNPD 256

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              K F + ++NPPF +K   D   V    KN +  RF  G+P   +G   FL+H    L
Sbjct: 257 GSLKTFDFAVANPPFSQKNWMDGVNV----KNDQYHRFDDGVPPAKNGDYAFLLHFIKSL 312

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ AI+L    LF G A   E+EIR+ L++   I+ I+ LP +LF+ T I   
Sbjct: 313 KSK----GKGAIILPHGVLFRGNA---EAEIRKNLIKKGYIKGIIGLPPNLFYGTGIPAV 365

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + ++  +  + R+G + +I+A+  +   R +G K R + +    +I+D +V+ +      
Sbjct: 366 ILVIDKKNAQARKG-IFIIDASKGY---RKDGNKNR-LRERDIHKIVDTFVNFKEIP--- 417

Query: 467 MLDYRTFGYRR-IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                  GY R + +    +  + L+   + R         +  ++      I K  + +
Sbjct: 418 -------GYSRMVSLEEIEKNDYNLN---IPRYIESTEKEDIQDIYAHLHGGIPKRDIDK 467

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
           I              +  E     +          I+        A+ V +     +   
Sbjct: 468 IEILNVFNDLKNRLFRKKEEGYYTLNVD-------IDNLTEIIENAEEVKEFKSHALAVF 520

Query: 586 NLTEYENVPYLESIQ 600
                EN+P L  I 
Sbjct: 521 EKWTDENMPILTGID 535


>gi|295105616|emb|CBL03160.1| type I restriction system adenine methylase (hsdM)
           [Faecalibacterium prausnitzii SL3/3]
          Length = 520

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 205/560 (36%), Gaps = 78/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51
           T+       L   IW  A+DL G     DF   +L     R +   +             
Sbjct: 4   TKKEQEREELHRAIWAIADDLRGAVDGWDFKSYVLGTMFYRYISENIASYINQGEIDAGN 63

Query: 52  -----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                      +        +  + F  +    F N            N    LE+    
Sbjct: 64  PDFRYEDMSDAEAEQAREGLVQEKGFFILPSELFCNV---RAKAANDENLNETLETVFRH 120

Query: 107 FSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151
             ++AK          +F+D+D +S   +L     ++   L K+    + + L       
Sbjct: 121 IEESAKGSSSEGQFAGLFDDYDVNS--NKLGATVAKRNEKLVKLLNGVADMNLGDVKEHD 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + S   +   +F TP DV  L T L       + K        +YD
Sbjct: 179 IDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKEINK--------VYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A   +       +        GQE+   T+ +C   M +  +E D    
Sbjct: 231 PACGSGSLLLKAEKVL------GRDAVRNGFFGQEINITTYNLCRINMFLHDIEFDKF-- 282

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I    TL+       + F   +SNPP+  KW  D++ +          RF P   L
Sbjct: 283 ---DIACEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDENPL-----LINDPRFAPAGVL 334

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+
Sbjct: 335 APKSKADLAFIMHSLAWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFID 387

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            I+ LP++LFF T+IAT + +L   KT+    KV  I+A+     + N       +  + 
Sbjct: 388 CIIQLPSNLFFGTSIATCIMVLKKGKTD---NKVLFIDASSECVKVTN----NNKLTPEN 440

Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I+D +  R E   FS + +Y         +     +     +  +  ++ +    ++
Sbjct: 441 INKIVDTFAQRTEEAHFSHLAEYSEVQENDYNLSVSTYVEAKDTREKIDIVKLNAEIAQI 500

Query: 508 SPLHQSFWLDILKPMMQQIY 527
               ++     +  ++ +I 
Sbjct: 501 -VARENELRAAIDQIVAEIE 519


>gi|51594888|ref|YP_069079.1| type I restriction-modification system, methyltransferase subunit
           (N-6 DNA methylase) [Yersinia pseudotuberculosis IP
           32953]
 gi|51588170|emb|CAH19777.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Yersinia pseudotuberculosis
           IP 32953]
          Length = 863

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/496 (20%), Positives = 195/496 (39%), Gaps = 66/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    TR  +  + +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALN 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFSDNAKAIFE 116
              D ++   V G   Y  +  +L        S    +N R+ L ++    S   K +FE
Sbjct: 62  EE-DADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE 120

Query: 117 DF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                  + +++L ++       +  +      I          V+  IYE+L+ +F + 
Sbjct: 121 GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNGNQGYDVLGYIYEYLLEKFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                 +YDPT G+G  L +       
Sbjct: 180 AGKKAGEFYTPHEVSVLMSNIIAYELKH------KDTIKIYDPTSGSGSLLINIGEAFE- 232

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286
              + K    +  + QEL+  T+ +    +++R +++   +      + G TL  D    
Sbjct: 233 --KYAKNKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPFF 285

Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                   +        +SNPP+ + W+      +         RF  GL   +     F
Sbjct: 286 DDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSDPR-----YSRF--GLAPKTKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G     E +IR+ L+E + I+ I+ LP ++F
Sbjct: 339 LLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGQIRKQLIEQNHIDTIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L   K + +   V +++A+  +        K   +     ++I D  + 
Sbjct: 392 FGTGIPTVILVL---KQKRQNTDVLVVDASKHFMKE----GKNNKLQASDIKRITDAVIK 444

Query: 459 REN-GKFSRMLDYRTF 473
           RE+  KFS+++  +T 
Sbjct: 445 RESIDKFSQLVSKQTL 460


>gi|268610089|ref|ZP_06143816.1| type I restriction-modification system methyltransferase subunit
           like protein [Ruminococcus flavefaciens FD-1]
          Length = 523

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/484 (20%), Positives = 192/484 (39%), Gaps = 69/484 (14%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +WK+A+ L G  +  ++  V+L    L+      E  R  + EKY   G   +D  +F  
Sbjct: 17  LWKSADKLRGSVEPAEYKHVVLSLFFLKFASDKFEAQRKMIAEKY---GDKFVDNIAFY- 72

Query: 75  VAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARL 127
                FY    S +S         +    +++    I   +   K         +  +RL
Sbjct: 73  TKDNVFYLPAESRWSFIMENAKQDDIALKIDTALFTIEKTNPALKGALP----DNYYSRL 128

Query: 128 -EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  +      I    D   + ++  IYE+ + +F     +G  +F TP+ +V+L
Sbjct: 129 HIDTSKLASLLDEIDKINT--DDSENDIIGRIYEYFLGKFALAEGKGKGEFYTPKCIVNL 186

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L+   D             LYDP CG+GG    ++  V     + K    +  +GQE
Sbjct: 187 IAELIEPYDG-----------ILYDPCCGSGGMFVQSIKFVEAHSGNKKK---VSIYGQE 232

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
               T  +    + IR + ++     +      +T + D     +  Y ++NPPF     
Sbjct: 233 YTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKADYIMANPPFN---- 282

Query: 307 KDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     E++  +  R+ G  +P  S+ +  +++++ +KL    +  G A  +L++  L
Sbjct: 283 --QKEWRAENELVDDPRWNGYEVPPTSNANYGWILNIVSKL----SQNGVAGFLLANGAL 336

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK---- 421
            +      E +IR+ L++N+L+EAI+ LP  LF+ T+I+  LWIL+  K      K    
Sbjct: 337 SDDGT---ELKIRKQLIDNNLVEAIIILPRSLFYTTDISVTLWILNKNKKARDVEKNGET 393

Query: 422 ---------VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-DYR 471
                    +  ++   + +       K   + ++ R ++   Y + +   +     D  
Sbjct: 394 IHYRDREREILFMDLRQMGSPFEK---KYVELTEEDRAKVTATYHAWQQKGYEETYQDIP 450

Query: 472 TFGY 475
            F Y
Sbjct: 451 EFCY 454


>gi|254672640|emb|CBA06429.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha275]
          Length = 514

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDYHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|117676102|ref|YP_863678.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
 gi|117614926|gb|ABK50379.1| type I restriction-modification system, M subunit [Shewanella sp.
           ANA-3]
          Length = 874

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/497 (19%), Positives = 196/497 (39%), Gaps = 63/497 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    T+  +  + +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTPEDIKALN 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLS-------TLGSTNTRNNLESYIASFSDNAKAIFED 117
                          ++   +   +           +N R+ L ++    S   K +FE 
Sbjct: 62  EEDADTVKYIQDNLGYFIAYDNLFATWVDPAFDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I ++       V+  IYE+LI +F +  
Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGKQGY-DVLGYIYEYLIEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +    V   
Sbjct: 181 GKKAGEFYTPHEVSVLMSHIIAHELKH------KDTIEIYDPTSGSGSLLINIGEAVE-- 232

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             + K    +  + QEL+  T+ +    +++R +++   +      + G TL  D     
Sbjct: 233 -KYAKSKDSITYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ + W+      +         RF  GL   +     FL
Sbjct: 287 ENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G   IVL    LF G     E EIR+ L+E + I+AI+ LP ++FF
Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIEQNHIDAIIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            T I T + +L  ++   ++ +  V +++A+  +        K   +     ++I+D  +
Sbjct: 393 GTGIPTVILVLKQKRGSIDKPQNDVLIVDASKHFVKE----GKNNKLQASDIKRIVDAVI 448

Query: 458 SRENGK-FSRMLDYRTF 473
           +R++ + FS+++  +T 
Sbjct: 449 NRDSIEKFSQVVSKQTL 465


>gi|312880991|ref|ZP_07740791.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784282|gb|EFQ24680.1| type I restriction-modification system, M subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 548

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/552 (21%), Positives = 206/552 (37%), Gaps = 75/552 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------YLA 61
           A L   IW+ A DL G     DF   +L     R +   L    +    +       Y A
Sbjct: 32  AELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYLNEQERRAGTPDFDYAA 91

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESYIASFSDNAKAIFE 116
              +  +      V    FY       + + +      +    L+   A    +A+    
Sbjct: 92  LSDAEAEQGRDETVKEKGFYILPSELFANVRARARRDEDLNETLDRVFAHIEGSARGTDS 151

Query: 117 DFDFSSTIARLE------------KAGLLYKICKNFSGIELH-----PDTVPDRVMSNIY 159
           + DF      L+            +   L K+      + L             +  + Y
Sbjct: 152 EDDFKGLFDDLDVNSGKLGPTVAKRNEKLVKLLDAIGDLPLAGGGGGFADNTIDLFGDAY 211

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L++ + S   +   +F TP++V  L   +       + K        +YDP CG+G  
Sbjct: 212 EYLMQMYASTAGKSGGEFYTPQEVSELLAHIAAAGKREVNK--------VYDPACGSGSL 263

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      +   G            GQE+   T+ +C   M +  +  +       +I  G
Sbjct: 264 LLQ---FLKVLGPD---RVRQGFFGQEINLTTYNLCRINMFLHDVNYEKF-----HIAHG 312

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+  +WE D + +          RF P   L   S   +
Sbjct: 313 DTLTDPAHGDDEPFEAIVSNPPYSIRWEGDANPL-----LINDPRFAPAGVLAPKSKADL 367

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L +     G AAIV     L+ G A   E++IRR+L++N+ ++A++ LP D
Sbjct: 368 AFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRRYLIDNNYVDAVIQLPAD 420

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T IAT + +L   K +        ++A+         G K R ++ + R++IL  Y
Sbjct: 421 LFFGTTIATCVIVLKKSKGDNAT---LFLDASGECV---RSGNKNR-LDPEHRQKILQAY 473

Query: 457 VSRENGK-FSRMLDYRTF---GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
            +R +   F+R++D       GY  I V   +      +   +  L A+I          
Sbjct: 474 RARRDVPHFARLVDNEEIARNGYN-IAVSSYVEQRDTREAVDIRALNAEIARIVARQGEL 532

Query: 513 SFWLDILKPMMQ 524
              +D L   ++
Sbjct: 533 RAQIDALVADLE 544


>gi|260664498|ref|ZP_05865350.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
 gi|260561563|gb|EEX27535.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii SJ-7A-US]
          Length = 550

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/578 (16%), Positives = 211/578 (36%), Gaps = 79/578 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSAV 55
           S   +   +W  A +L G+   +++   IL F   R L             L+     ++
Sbjct: 2   SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLKKNDILDIEDGESI 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRNNLESYIASF-- 107
            + Y+     +   +    +A    Y    + + ++L           ++ +  +  F  
Sbjct: 62  NDAYVREASGDDLADYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121

Query: 108 ----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                     S + + +F D +   +       ++A  + KI +    IE   +   D  
Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI- 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  IYE+LI +F +   +   +F TP +V  +   L+                 +YDPTC
Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLK-----GEPEEFEVYDPTC 235

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      V       K P ++  +GQE    T+ +    +++  +E       + 
Sbjct: 236 GSGSLLLT----VQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNA 291

Query: 275 NIQQGSTLSKDLF-------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326
           +  +      D             F   ++NPP+   W+ +++ +       +  RF   
Sbjct: 292 DTLEAD--WPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNNENKL-------KDPRFSAY 342

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +     F++H    L       G  AIVL    LF G A   E  IR+ ++E +
Sbjct: 343 GKLAPKTKADYAFVLHGLYHLSPE----GTMAIVLPHGVLFRGAA---EGVIRQNIIEKN 395

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++A++ LP +LF+  +I T + +    +  +    +  I+A+  +      GK +  + 
Sbjct: 396 YLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEK----GKNQNKLT 448

Query: 446 DDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           ++   +I+  Y+ RE+  K++   +          +  P    ++        ++     
Sbjct: 449 EENIDKIISTYLKREDVDKYAHKAELDEIKENDYNLNIP---RYVDTFEPEPPVDLGKVA 505

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
            +L  ++Q    +  K ++  +      +  ++  +  
Sbjct: 506 DELEEVNQK-IAENKKELLGMLKELTTDDDDLRAQLDK 542


>gi|229819004|ref|YP_002880530.1| type I restriction-modification system, M subunit [Beutenbergia
           cavernae DSM 12333]
 gi|229564917|gb|ACQ78768.1| type I restriction-modification system, M subunit [Beutenbergia
           cavernae DSM 12333]
          Length = 524

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/495 (23%), Positives = 196/495 (39%), Gaps = 75/495 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSAV 55
           M   T   A L   IW+ A DL G     DF   +L F   R +   L        R A 
Sbjct: 1   MNRETQ-RAELHKTIWRIANDLRGSVDGWDFKAYVLGFLFYRYISEDLTAYLNAGERDAG 59

Query: 56  REKYLAFGGSNIDLESFVKVAG----YSFYNTSEYSLSTLGSTNTRN-NLESYIA----- 105
              +      N  +     VAG      F+       + + +   R+ NL   +      
Sbjct: 60  STDFEYVTAPNSVVADHEVVAGIVAEKGFFIRPSELFANVRARAARDPNLNETLERVFRT 119

Query: 106 --------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
                      D+ K +F+D D +S   +L     ++   L ++      + L   T  +
Sbjct: 120 IESSAVGTEAEDDLKGLFDDVDVNS--NKLGPTVAKRNEKLVRLLDAIGDLNLGNGTFSE 177

Query: 153 ---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  + YE+L++ + S   +   ++ TP++V  L   + +    ++ K        +
Sbjct: 178 NKIDAFGDAYEYLMQMYASAAGKSGGEYYTPQEVSELLARITVVGKTSVNK--------V 229

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDP CG+G  L      +   G            GQE+   T+ +C   M +  +     
Sbjct: 230 YDPACGSGSLLLKFRKVLGKGGVRQG------YFGQEINLTTYNLCRINMFLHDV----- 278

Query: 270 RDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
                +I  G TL   +    + F   +SNPP+  KW  D + +          RF P  
Sbjct: 279 GFEHFDIAHGDTLIDPMHWDDEPFEAIVSNPPYSIKWAGDANPL-----LINDPRFAPAG 333

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L   S   + F MH+ + L +     G AAIV     L+ G A   E +IR++L++N+ 
Sbjct: 334 VLAPKSKADLAFTMHMLSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRKYLIDNNF 386

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++A++ LP DLFF T IAT + +L   K +     V  I+A+  +      G  +  + +
Sbjct: 387 VDAVIQLPPDLFFGTAIATCIIVLKKSKADNG---VLFIDASAQFVR----GGNKNKLTE 439

Query: 447 DQRRQILDIYVSREN 461
             +++ILD + +R++
Sbjct: 440 ANQQRILDAFTTRDD 454


>gi|319896988|ref|YP_004135183.1| type i restriction enzyme hindviip m protein [Haemophilus
           influenzae F3031]
 gi|317432492|emb|CBY80849.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae F3031]
          Length = 586

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/573 (16%), Positives = 190/573 (33%), Gaps = 87/573 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV------------ 55
              L   +W +A+ L       ++  ++L    L+ +  +    +  +            
Sbjct: 51  LNELDEKLWASADKLRQQLDAANYKHIVLGLIFLKYISDSFTHQQEKIQAELTDPENVLY 110

Query: 56  --------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI--- 104
                    EKY     + ++   +   A   F+  +      L   +   N  + +   
Sbjct: 111 LDRTFYDTEEKYQDALTAELENRDYY-TADNVFWVPASARWQALQEVSIL-NTGAELPWG 168

Query: 105 ASFSDNAKAIFEDFD-FSSTIARLE-----------KAGLLYKICKNFSGIELHPDTVP- 151
             FS  AK I + FD       +L+               L  +   FS       T   
Sbjct: 169 GKFSGVAKLIDDAFDAIEKDNEKLKGVLQRISGYAVNEDTLRGLIILFSDTHFTRPTYNG 228

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 229 EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 277

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 278 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NMSIYGQEFNPTTWKLAAMNMAIRGI 334

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF                  +  R+
Sbjct: 335 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRW 381

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EI + ++  
Sbjct: 382 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIHKGIINA 435

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 436 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 490

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I D   + +    S   + +    +   +       F+L         E +  
Sbjct: 491 TADDIAKISDTLHAWQK---SDGYEDQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 547

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 548 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 580


>gi|59800848|ref|YP_207560.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae FA 1090]
 gi|254493318|ref|ZP_05106489.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae 1291]
 gi|268594456|ref|ZP_06128623.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae 35/02]
 gi|268598584|ref|ZP_06132751.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae MS11]
 gi|268686196|ref|ZP_06153058.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|293399447|ref|ZP_06643600.1| type I restriction-modification system, M subunit [Neisseria
           gonorrhoeae F62]
 gi|59717743|gb|AAW89148.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae FA 1090]
 gi|226512358|gb|EEH61703.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae 1291]
 gi|268547845|gb|EEZ43263.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae 35/02]
 gi|268582715|gb|EEZ47391.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae MS11]
 gi|268626480|gb|EEZ58880.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae SK-93-1035]
 gi|291610016|gb|EFF39138.1| type I restriction-modification system, M subunit [Neisseria
           gonorrhoeae F62]
          Length = 514

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 188/488 (38%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N  +E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
              + + I   F DF +T +RL     +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+   W    D            RF P   L   S    
Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ ++
Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIAEIVKLF 442

Query: 457 VSRENGKF 464
             + +   
Sbjct: 443 ADKADVPH 450


>gi|239998596|ref|ZP_04718520.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae 35/02]
 gi|240112514|ref|ZP_04727004.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae MS11]
 gi|240127799|ref|ZP_04740460.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 513

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 188/488 (38%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 --DNAKAIFEDFD-FSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
              + + I   FD F +T +RL     +K   L  + K  + ++    +     +  + Y
Sbjct: 120 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 180 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+   W    D            RF P   L   S    
Sbjct: 281 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 336 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ ++
Sbjct: 389 LFYGTCIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIAEIVKLF 441

Query: 457 VSRENGKF 464
             + +   
Sbjct: 442 ADKADVPH 449


>gi|217034273|ref|ZP_03439690.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10]
 gi|216943245|gb|EEC22710.1| hypothetical protein HP9810_885g4 [Helicobacter pylori 98-10]
          Length = 543

 Score =  285 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 118/596 (19%), Positives = 220/596 (36%), Gaps = 87/596 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +       ++    K   + 
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-----KARNDAKNNTYS 55

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
              +            FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 56  EIEVPQR--------CFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 210 KKGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDSKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 470 SYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525


>gi|160945140|ref|ZP_02092366.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442871|gb|EDP19876.1| hypothetical protein FAEPRAM212_02659 [Faecalibacterium prausnitzii
           M21/2]
          Length = 525

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 205/560 (36%), Gaps = 78/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51
           T+       L   IW  A+DL G     DF   +L     R +   +             
Sbjct: 9   TKKEQEREELHRAIWAIADDLRGAVDGWDFKSYVLGTMFYRYISENIASYINQGEIDAGN 68

Query: 52  -----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                      +        +  + F  +    F N            N    LE+    
Sbjct: 69  PDFRYEDMSDAEAEQAREGLVQEKGFFILPSELFCNV---RAKAASDENLNETLETVFRH 125

Query: 107 FSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVP 151
             ++AK          +F+D+D +S   +L     ++   L K+    + + L       
Sbjct: 126 IEESAKGSSSEGQFAGLFDDYDVNS--NKLGATVAKRNEKLVKLLNGVADMNLGDVKEHD 183

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + S   +   +F TP DV  L T L       + K        +YD
Sbjct: 184 IDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKEINK--------VYD 235

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L  A   +       +        GQE+   T+ +C   M +  +E D    
Sbjct: 236 PACGSGSLLLKAEKVL------GRDAVRNGFFGQEINITTYNLCRINMFLHDIEFDKF-- 287

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I    TL+       + F   +SNPP+  KW  D++ +          RF P   L
Sbjct: 288 ---DIACEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDENPL-----LINDPRFAPAGVL 339

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F+MH    L       G AAIV     ++ G A   E +IR++L++N+ I+
Sbjct: 340 APKSKADLAFIMHSLAWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNFID 392

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            I+ LP++LFF T+IAT + +L   KT+    KV  I+A+     + N       +  + 
Sbjct: 393 CIIQLPSNLFFGTSIATCIMVLKKGKTD---NKVLFIDASSECVKVTN----NNKLTPEN 445

Query: 449 RRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             +I+D +  R E   FS + +Y         +     +     +  +  ++ +    ++
Sbjct: 446 INKIVDTFAQRTEEAHFSHLAEYSEVQENDYNLSVSTYVEAKDTREKIDIVKLNAEIAQI 505

Query: 508 SPLHQSFWLDILKPMMQQIY 527
               ++     +  ++ +I 
Sbjct: 506 -VARENELRAAIDQIVAEIE 524


>gi|187933312|ref|YP_001886270.1| type I restriction-modification system, M subunit [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721465|gb|ACD22686.1| type I restriction-modification system, M subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 529

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/501 (19%), Positives = 190/501 (37%), Gaps = 80/501 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----------TR 52
              +  S+ N +W  A +L G    +++   IL F   R L    E              
Sbjct: 1   MNNNIKSITNKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEEYLLKNNVIDVIEG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIAS 106
            ++ E Y +    +   +    ++    Y  +   +  +L      S    ++ ++   +
Sbjct: 61  ESINESYNSQVDESELEDYLQDISASLGYAIAPKDTWQSLIDKINDSQVIPSDYQTIFDN 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ NA          + +F D +   +    +  E+A  L  I K    IE   +   D 
Sbjct: 121 FNKNAELNKEAVKDFRGVFNDINLGDSRLGNSTNERAKSLNNIVKLVDSIEYKGNDGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++ +  +         + ++YDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTEGVE-----KSDELFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +            +   GQEL   T+ +    +++  +  +     +
Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHGISYNNMVLSN 287

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D   G         + F   ++NPP+  KW+ D+  +       +  RF
Sbjct: 288 A-----DTLESDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRF 335

Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L   S     F++H    L       G  AIVL    LF G A   E +IR  L+
Sbjct: 336 SEYGKLAPASKADYAFILHSIYHLNKT----GTMAIVLPHGVLFRGAA---EGKIREALI 388

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             + ++ I+ LP +LF+ T+I T + +L   +  +    +  I+A++ +   +N    + 
Sbjct: 389 GKNYLDTIIGLPANLFYGTSIPTVILVLKKNRENK---DILFIDASNDFEKNKN----QN 441

Query: 443 IINDDQRRQILDIYVSRENGK 463
            + D+   +I+  Y  R++  
Sbjct: 442 NLRDEDIDKIIKTYKERKDAP 462


>gi|238855187|ref|ZP_04645508.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|282934313|ref|ZP_06339583.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
 gi|313472057|ref|ZP_07812549.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 1153]
 gi|238832216|gb|EEQ24532.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 269-3]
 gi|239530086|gb|EEQ69087.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 1153]
 gi|281301597|gb|EFA93871.1| type I restriction-modification system, M subunit [Lactobacillus
           jensenii 208-1]
          Length = 550

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/498 (18%), Positives = 187/498 (37%), Gaps = 74/498 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALE-PTRSAV 55
           S   +   +W  A +L G+   +++   IL F   R L             L+     ++
Sbjct: 2   SEKDITTKLWAMANELRGNMDASEYKNYILAFMFYRYLSEHQEDYLKKNDILDIEDGESI 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTL-----GSTNTRNNLESYIASF-- 107
            + Y+     +   +    +A    Y    + + ++L           ++ +  +  F  
Sbjct: 62  NDAYVREASGDDLADYLEDIASSLGYAIEPHDTWASLIKRVQDKEVIPSDYQDLLDHFAK 121

Query: 108 ----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                     S + + +F D +   +       ++A  + KI +    IE   +   D  
Sbjct: 122 NTELANNKTASQDFRGVFNDVNLGDSRLGSNTNDRAKSISKIVQLVDTIEYKDENGKDI- 180

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  IYE+LI +F +   +   +F TP +V  +   L+                 +YDPTC
Sbjct: 181 LGTIYEYLIGQFAASAGKKGGEFYTPFEVSKVLAKLVTANLK-----GEPEEFEVYDPTC 235

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      V       K P ++  +GQE    T+ +    +++  +E       + 
Sbjct: 236 GSGSLLLT----VQGEVPGGKKPGVVKFYGQEKNTTTYNLSRMNLMMHGVEFTNIHLSNA 291

Query: 275 NIQQGSTLSKDLF-------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP- 326
           +  +      D             F   ++NPP+   W+ +++ +       +  RF   
Sbjct: 292 DTLEAD--WPDGLDAQGIDRPKTNFDAVVANPPYSAHWDNNENKL-------KDPRFSAY 342

Query: 327 -GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +     F++H    L       G  AIVL    LF G A   E  IR+ ++E +
Sbjct: 343 GKLAPKTKADYAFVLHGLYHLSPE----GTMAIVLPHGVLFRGAA---EGVIRQNIIEKN 395

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++A++ LP +LF+  +I T + +    +  +    +  I+A+  +      GK +  + 
Sbjct: 396 YLDAVIGLPANLFYGVSIPTIVLVFKKNRQNK---DIFFIDASREFEK----GKNQNKLT 448

Query: 446 DDQRRQILDIYVSRENGK 463
           ++   +I+  Y+ RE+  
Sbjct: 449 EENIDKIISTYLKREDVD 466


>gi|209523721|ref|ZP_03272274.1| type I restriction-modification system, M subunit [Arthrospira
           maxima CS-328]
 gi|209495753|gb|EDZ96055.1| type I restriction-modification system, M subunit [Arthrospira
           maxima CS-328]
          Length = 513

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 120/490 (24%), Positives = 195/490 (39%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT  T   A+L   IW+ A D+ G     DF + +L     R +            +   
Sbjct: 1   MT-STQQRAALQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTSYAEGGDDSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFY--------NTSEYSLSTLGST--NTRNNLESYIA 105
           Y     S+I  +     +K  GY  Y          S  +  +L +        +ES   
Sbjct: 60  YAKLSDSDIPDDFKDDAIKTKGYFIYPSQLFANIAASANTNESLNTDLAAIFAAIESSAN 119

Query: 106 SF--SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
            +    + K +F   DF +T  RL     +K   L  + K  +G++          +  +
Sbjct: 120 GYPSEPDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGGFDASHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQQVSRLIAQLAMHQQTSVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H  D             +GQE+    + +    M +  +  +       NIQ
Sbjct: 230 SLLLQAKKHFDDHRIEEG------FYGQEINHTNYNLARMNMFLHNINYNKF-----NIQ 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL+   F  ++ F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 279 LGNTLTDPHFGDEKPFDAIVSNPPYSVKWVGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E++IR++L++N+ +E ++AL 
Sbjct: 334 DFAFVLHCLSYLSSS----GRAAIVCFPGIFYRGGA---EAKIRKYLVDNNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  K +      Q I+A+ L+    N       + DD   +I+ 
Sbjct: 387 PNLFFGTPIAVTVLVLSKDKPDSTT---QFIDASGLFKKETN----NNTLTDDHIAEIMG 439

Query: 455 IYVSRENGKF 464
           ++ S+EN   
Sbjct: 440 VFDSKENVDH 449


>gi|297250308|ref|ZP_06864065.2| type I restriction-modification system, M subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296839226|gb|EFH23164.1| type I restriction-modification system, M subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 514

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 187/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       R F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G     E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGT---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|90580558|ref|ZP_01236363.1| hsdM site-specific DNA-methyltransferase, type I modification
           [Vibrio angustum S14]
 gi|90438216|gb|EAS63402.1| hsdM site-specific DNA-methyltransferase, type I modification
           [Photobacterium angustum S14]
          Length = 567

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/554 (17%), Positives = 187/554 (33%), Gaps = 96/554 (17%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L   +W  A+ L        +   +L    ++ +  A +  +  ++           
Sbjct: 9   LKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQEEIKADLANPEHEYY 68

Query: 57  -------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--------------- 94
                  E+ LA   +    +         F+  +E     L                  
Sbjct: 69  IDPADFSEEELAQEIAIELEQRDFYTEKNVFWLPTESRWQFLQDNGPRVIGGADLEIDGK 128

Query: 95  --------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL- 145
                   +  +N    I   +   K +      +  I +      L ++    + I   
Sbjct: 129 VKKITSVGHLIDNALEGIERDNPKLKGVLNKSYAALKIDQ----AKLNELINLIATIPFV 184

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           H D     ++ ++YE+++ +F     +    F TP  +V L   ++              
Sbjct: 185 HADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVSLIVEMI-----------EPF 233

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETHAVCVAGML 260
              +YDP  G+GGF   +   +    +  +I        +  +GQE    T  +    M 
Sbjct: 234 EGRVYDPAMGSGGFFVQSEKFIERRANQKEIDPLTQKQKISIYGQEYNHTTWQLAAMNMA 293

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           IR L+ D  ++ +      ST +       R  + ++NPPF  K             +  
Sbjct: 294 IRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT-------GVDDN 340

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             RF  G P + + +  ++ H+ + L      G +A ++ + S          E  IR+ 
Sbjct: 341 DPRFKYGQPPVGNANFAWMQHMLHHL---SADGSQALLLANGSMSSTTNN---EGTIRQA 394

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGKVQLINATDL 430
           L+E DLIE +VALP  LF  T I   +W L+  KT            R+G+V  I+  +L
Sbjct: 395 LIEKDLIECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRARKGEVLFIDVRNL 454

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRR-IKVLRPLRMSF 488
                      R    D   ++ D+Y + + G+    + Y    G+ + + +    +  F
Sbjct: 455 GYMKDRV---LRDFTRDDIEKVADLYHAWKTGEEVNGIAYEDQAGFCKSVTLEEITKHDF 511

Query: 489 ILDKTGLARLEADI 502
           +L          ++
Sbjct: 512 VLTPGRYVGATEEL 525


>gi|46143389|ref|ZP_00135350.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126208115|ref|YP_001053340.1| putative type I modification enzyme [Actinobacillus
           pleuropneumoniae L20]
 gi|126096907|gb|ABN73735.1| putative type I modification enzyme [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 521

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/482 (18%), Positives = 169/482 (35%), Gaps = 74/482 (15%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA------------FGG 64
           K A+ L       ++  ++L    L+ +  +    R  +  ++                 
Sbjct: 3   KAADKLRQQLDAANYKHIVLGLIFLKYVSDSFTAQRERLSAQFRDPNSDYYLSDITTEEI 62

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI------ASFSDNAKAIFEDF 118
            +   E         F+       + + +   R NL   I         ++     F+  
Sbjct: 63  ESELEERDYYTQDNVFWVPQIARWNEIKA-VVRANLGDTIFENKTFKGVANLIDEAFDAI 121

Query: 119 -----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP--------DRVMSNIYEH 161
                     I R+        +L  + + FS       T+           ++ ++YE+
Sbjct: 122 EKDNPKLKGVIQRISSYNVDESILIGLVELFSDTNFTHPTLNGKPVSLAAKDILGHVYEY 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +F     +    + TP+ +V L   +L                 +YDP  G+GGF  
Sbjct: 182 FLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYEGRIYDPAMGSGGFFV 230

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                + +   +   P  +  +GQE  P T  +    M IR L  D  +  +       T
Sbjct: 231 QTERFIREHQGN---PNRVSIYGQEFNPTTWKLAAMNMAIRGLSFDFGKGNA------DT 281

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            S      KR  + ++NPPF      ++             R+  G P  S+ +  +L H
Sbjct: 282 FSNPQHLDKRMDFVMANPPFNMNEWWNQSLAN-------DPRWKFGTPPSSNANFAWLQH 334

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L       G+ A++L++  + +      E EIRR ++  DL+EA++ALP+ LF  T
Sbjct: 335 MIYHLSEK----GKMALLLANGSMSSNTNN--EGEIRRNIVRADLVEAMIALPSQLFTNT 388

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I   +W+L+  K    +G+V  I+A  L           R         + + Y   + 
Sbjct: 389 QIPACIWVLNKAKPR--KGEVLFIDARQLGYMKTRV---MRDFTPKDIASVAETYHQWQK 443

Query: 462 GK 463
           G+
Sbjct: 444 GE 445


>gi|15645469|ref|NP_207643.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313984|gb|AAD07898.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 527

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/567 (21%), Positives = 210/567 (37%), Gaps = 80/567 (14%)

Query: 2   TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRS 53
                S     L N IWK A +L G     DF + +L     R +   +      E  + 
Sbjct: 6   NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKEERKR 65

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYI-ASFSD-- 109
                Y        +      +    F+        + L +     +L   +   F++  
Sbjct: 66  DPSFDYAKLSDEKAERGRKHLIEQKGFFIPPSALFCNALKNACHNEDLNVTLQNIFNEIE 125

Query: 110 ----------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
                     N K +F D D +S     +   +   L KI +   G++L         V 
Sbjct: 126 KSSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILEAIGGMQLGDYLKSGIDVF 185

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG
Sbjct: 186 GDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHGQESVNK--------VYDPCCG 237

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      + D              GQE+   T+ +C   M +  +          +
Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286

Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL        + F   +SNPP+  KW  D + +          RF P   L   +
Sbjct: 287 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPI-----LINDERFSPAGVLAPKN 341

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   E++IR +L++ ++I+ ++A
Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIA 394

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L   K ++       I+A+  +     EGKK   + +  R +I
Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFV---KEGKK-NKLKERNREKI 447

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L  Y+ R+  K    L           + +     + L        E       +  L+ 
Sbjct: 448 LQTYIERKEIKHFCALAN---------IEKIKENDYNLSVNRYVEQEDTKEAIDIKALN- 497

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539
               +I + + +Q       ES +KE 
Sbjct: 498 ---SEIAQIVEKQSALRNRLESIIKEL 521


>gi|294793954|ref|ZP_06759091.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
 gi|294455524|gb|EFG23896.1| type I restriction-modification system, M subunit [Veillonella sp.
           3_1_44]
          Length = 531

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/491 (20%), Positives = 197/491 (40%), Gaps = 72/491 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A L   ++  A+ L G      +   +L     + L   L  +   V + Y +    +  
Sbjct: 3   AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLES--TVVKAYKSLDEYDTV 60

Query: 69  LES--------FVKVAGYSF---------YNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            +             +   F         Y+     L +  + + ++N    +   +   
Sbjct: 61  AKQTELYKSYILNDKSKAFFIATMSDTLGYHIEPQYLFSELANSVKDNSFELVHLRNAFV 120

Query: 112 K---------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +          +F+D D  S    +   ++   + ++ K    +++        V+ + Y
Sbjct: 121 RLETAYKQFEGLFDDIDLDSKQLGVDANQRNITISEVIKKLDEVDVL--GHDGDVIGDAY 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ V ++   ++    +           T+YDPT G+G  
Sbjct: 179 EYLIGEFAAGSGKKAGEFYTPQQVSNMMAQIVTIGQEDT------PSFTVYDPTMGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++         P  +  HGQEL   T+ +    +++  + ++ +R     +  G
Sbjct: 233 MLNVRKYL-------NNPDRVQYHGQELNVTTYNLARMNLILHEVNAEDQR-----LHNG 280

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     
Sbjct: 281 DTLNKDWPTDEPYMFDSVVMNPPYSAKWSADPTFMDDAR----FNRYG-KLAPKSKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 336 FLLHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGIIRKKLLEDGSIYAVIGMPANL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   +       V  I+A++ +T  +N    +  +  +  ++I+D Y 
Sbjct: 389 FFGTSIPTTVIILKKNRPGR---DVLFIDASNNFTKFKN----QNKLEPEHIKRIVDTYK 441

Query: 458 SRENGKFSRML 468
           +RE+ +    L
Sbjct: 442 NRESIEKYSYL 452


>gi|238923269|ref|YP_002936784.1| type I restriction-modification system methylation subunit
           [Eubacterium rectale ATCC 33656]
 gi|238874943|gb|ACR74650.1| type I restriction-modification system methylation subunit
           [Eubacterium rectale ATCC 33656]
          Length = 533

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 195/500 (39%), Gaps = 69/500 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52
           M E   ++  L + +W  A+ L       ++   +L     + L  +            +
Sbjct: 1   MAE-QENSKDLISVLWSGADVLRSKMDANEYKNYLLGIVFYKYLSDSFLIRVYDLINDEK 59

Query: 53  SA----VREKYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIA 105
                   E Y          +   ++     Y       Y+     + N   N E    
Sbjct: 60  PESLKVALEAYKNELKGEYANDLLDELKQDRKYVIEPELTYTCFAEDARNNCFNREQLQK 119

Query: 106 SFSDNAK------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           +F++  +       +F D D  S+       +++  + ++ K     +L        ++ 
Sbjct: 120 AFNNIEQSGELFVDLFSDIDLYSSRLGAGDQKQSDTIAELIKVIDQADLLNSDGE--ILG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F SE  + A +F TP+ V  + T + +   + +         ++YDP  G+
Sbjct: 178 DAYEYLIGQFASETGKKAGEFYTPQAVSKILTRIAITGQENV------KGLSIYDPCMGS 231

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +A  +     ++ K       +GQEL   T+ +    M +  + ++     ++N+
Sbjct: 232 GSLLLNAKRYYKGDTNYIK------YYGQELNMSTYNLARMNMFLHDVAAE-----NQNL 280

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
             G TL  D  TG+   FH  L NPP+  KW      ++ E       RF     L   S
Sbjct: 281 HHGDTLDADWPTGEETDFHMVLMNPPYSAKWSAASGFLQDE-------RFSEYGVLAPKS 333

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E +IR  LL +  I A++ 
Sbjct: 334 KADYAFLLHGLYHLKS----NGTMAIVLPHGVLFRGAA---EGKIREKLLRSGNIYAVIG 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T+I T + +L   +       V  I+A+  +      GKK+  ++D+   ++
Sbjct: 387 LPANLFYNTSIPTCIVVLKKHRDGR---DVLFIDASKKFIK----GKKQNEMSDEHIDEV 439

Query: 453 LDIYVSRENGKFSRMLDYRT 472
           +D+Y  RE       L    
Sbjct: 440 MDLYNRRETVDKESYLASFD 459


>gi|89073170|ref|ZP_01159709.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
 gi|89051123|gb|EAR56580.1| type I site-specific deoxyribonuclease [Photobacterium sp. SKA34]
          Length = 529

 Score =  284 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/497 (19%), Positives = 181/497 (36%), Gaps = 74/497 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EKY 59
              L   +W+ A  L G  +  DF   IL     + L   L      +         +  
Sbjct: 6   QKELNLQLWQIATHLRGQMQGDDFRNYILGLLFYKYLSDKLIRYADELLLDDGIRFAQID 65

Query: 60  LAFGGSNIDLESFVKVAGYS---FYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNA 111
                    LE+  + A      F+  SE     L           +++   +     + 
Sbjct: 66  EKSEDGQEYLEAIKEEARNVLGYFFKPSEL-FHVLAEAGANGKFILDDVRDVLNDIEQST 124

Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                  DF      L+            +  L+ K+ ++   I+ H +     ++ + Y
Sbjct: 125 MGADSADDFDGLFDELDLTSNKLGKTPDARNKLIAKVLEHLDNIDFHLENSEIDILGDAY 184

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F S   + A +F TP+ +  L   L+   ++         I ++YDPTCG+G  
Sbjct: 185 EYLIGMFASGAGKKAGEFYTPQILSKLLAKLVTLGNED--------IESVYDPTCGSGSL 236

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +             +GQE  P T+ +    M++  L+ D       +I+  
Sbjct: 237 LLQAARESRNLDVK--------CYGQEQNPNTYNLARMNMIMHGLDYDG-----FDIKNA 283

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSML 337
            TL        RF   ++NPPF   W      +          RF     L   +     
Sbjct: 284 DTLHAPQHLNLRFDAIVANPPFSMHWSPTPLYMS-------DPRFAESGKLAPKTKADYA 336

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD 396
           F+ H+  +L    +  G  A+V+    LF   A   E  IR++L+ + + ++ ++ LP++
Sbjct: 337 FIQHMLYQL----SDTGTMAVVVPHGVLFRSLA---EGHIRKFLIKDKNYLDMVIGLPSN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +   T +   + +   +K+ +    V  I+A+  +      GK    + ++  ++IL+  
Sbjct: 390 IVLGTGVPVCILVF--KKSRKVDDNVLFIDASQHFEK----GKNANYLREEDLQRILNAV 443

Query: 457 VSREN-GKFSRMLDYRT 472
             REN  +FS +     
Sbjct: 444 SKRENIDQFSHLASISD 460


>gi|308062171|gb|ADO04059.1| type I restriction-modification system, M subunit [Helicobacter
           pylori Cuz20]
          Length = 529

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/580 (21%), Positives = 213/580 (36%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49  --EPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             E  +            E+  +     I+ + F       F N  + +        T  
Sbjct: 61  NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  D + +    K     RF P 
Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSNPILINDK-----RFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L    +  G  AIV     L+ G A   E++IR  L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYL----SNTGTCAIVEFPGVLYRGNA---EAKIREHLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 VIDCVIALPDNLFFGTSIATCILVLKKNKPDDTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 EHNREKILQTYTERKTIKHFSALAN---------MEKIKENDYNLSVNRFVEQEDTKEII 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L+     +I + + +Q       E  +KE  +   A
Sbjct: 494 DIKALN----GEISQIVEKQSALRNSLELIIKELEEGQNA 529


>gi|90411353|ref|ZP_01219365.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Photobacterium profundum 3TCK]
 gi|90327882|gb|EAS44213.1| hsdM; site-specific DNA-methyltransferase, type I modification
           [Photobacterium profundum 3TCK]
          Length = 567

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/601 (16%), Positives = 197/601 (32%), Gaps = 100/601 (16%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57
           M +        L   +W  A+ L        +   +L    ++ +  A +  +  ++   
Sbjct: 1   MNQTEQQFLKELEGKLWNAADKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADL 60

Query: 58  ---KYLAFGGS-------------NIDLESFVKVAGYSFYNTSEYSLSTLGST------- 94
              ++  +                    +         F+   E     L          
Sbjct: 61  ANPEHEYYLDPVDFSEEELLEEIKIELEQRDFYTEKNVFWLPIESRWQFLQDNGPLVIGG 120

Query: 95  ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
                           +  +N    I   +   K +      S  I +      L ++  
Sbjct: 121 AELDVDGKTKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSSLKIDQ----AKLNELIN 176

Query: 139 NFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             + I   H D     ++ ++YE+++ +F     +    F TP  +V L   ++      
Sbjct: 177 LIATIPFVHADLNSKDILGHVYEYMLGQFALAEGKKGGQFYTPASIVTLIVEMI------ 230

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252
                      +YDP  G+GGF   +   +    +  ++        +  +GQE    T 
Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERHANEKQVDAITQKQKISIYGQEYNHTTW 285

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M IR L+ D  ++ +      ST +       R  + ++NPPF  K        
Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT---- 335

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                +    RF  G P   + +  ++ H+ + L      G +A ++ + S         
Sbjct: 336 ---GVDDNDPRFKYGQPPAGNANFAWMQHMLHHLAP---EGSQALLLANGSMSSTTNN-- 387

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE----------RRGKV 422
            E  IR+ L+ENDLIE +VALP  LF  T I   +W L+  K             R+G+V
Sbjct: 388 -EGTIRQALIENDLIECMVALPGQLFTNTQIPACIWFLTKNKKPRVDKAGRKLRGRKGEV 446

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480
             I+A +L           R  + D  +++ D++ + + G+    + Y    G+ +   +
Sbjct: 447 LFIDARNLGYMKDRV---LRDFSFDDVKRVADLFHAWKTGEEIHGVAYEDQAGFCKSATL 503

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
               +  F+L          +                +   + +Q       E+ +K+++
Sbjct: 504 EEITKHDFVLTPGRYVGAAEE---EDDGVPFGEKMATLTAKLSEQFVESATLEADIKKNL 560

Query: 541 K 541
            
Sbjct: 561 L 561


>gi|325678458|ref|ZP_08158075.1| N-6 DNA Methylase [Ruminococcus albus 8]
 gi|324109846|gb|EGC04045.1| N-6 DNA Methylase [Ruminococcus albus 8]
          Length = 290

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 116/306 (37%), Positives = 165/306 (53%), Gaps = 23/306 (7%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           FS N + I +  DF   I +++K   L  + K FS ++L P T+ +  M  I+E LIR+F
Sbjct: 1   FSANVQDIIKSLDFDKQIDKMDKNNRLLSVVKAFSELDLDPKTIDNVKMGYIFEELIRKF 60

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
               +  A D  T RD++ L   +LL        +    I T+ D   GTGG L+ + N 
Sbjct: 61  SE--NAEAGDHYTGRDIIKLMVNILLAEGCDDIFDDHKEI-TILDQAAGTGGMLSTSYNF 117

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +        +       GQE+ PE++A+CVA MLI+          ++NI+   T+  D 
Sbjct: 118 IHRYNPTANV----RLFGQEINPESYAMCVAEMLIKGQN-------AENIRMQDTMKADC 166

Query: 287 FTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           F  ++  + + NPPFG  W      E  + AV++E++ G  GRFG GLP   D  +LF+ 
Sbjct: 167 FPDRQMRFVIENPPFGTPWGGKDAAEGVEQAVKEENQKGFDGRFGAGLPGSGDMQLLFIQ 226

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              NK+    N  GRAAI+ + SPLF+G   SGES+IRRWLLENDLIEAI+ALP DLF+ 
Sbjct: 227 SAVNKM---DNALGRAAIIENGSPLFSGGTSSGESQIRRWLLENDLIEAIIALPVDLFYN 283

Query: 401 TNIATY 406
           T I   
Sbjct: 284 TGILCC 289


>gi|326334517|ref|ZP_08200728.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693286|gb|EGD35214.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 515

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 120/484 (24%), Positives = 192/484 (39%), Gaps = 70/484 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61
                L   IWK A ++ G     DF + +L     R +        E    +V  +Y  
Sbjct: 5   KQREELQAAIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTNFIEGGDESV--QYAE 62

Query: 62  FGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD-------- 109
                I  E      K  GY  Y  S+  ++   + NT +NL + +A+ FS         
Sbjct: 63  LPDEAITPEIKDDATKTKGYFIY-PSQLFVNVAKNANTNSNLNTDLAAIFSAIESSANGY 121

Query: 110 ----NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
               + K +F   DF +T  RL     EK   L  +    +G+     +     +  + Y
Sbjct: 122 PSEADIKGLFA--DFDTTSNRLGNTVEEKNKRLAAVVNGVAGLSFGDFENHQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP++V  L   L L    ++ K        +YDP CG+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQNVSKLIAQLALLGQSSVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A  H  D              GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKHFDDYQIEEG------FFGQEINHTTYNLVRMNMFLHNINYDKF-----NIALG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL    F  ++ F   +SNPP+   W    D            RF P   L   S    
Sbjct: 281 DTLINPCFGDEKPFDAIVSNPPYSVNWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++ALP +
Sbjct: 336 AFVLHSLSYL----SAKGRAAIVCFPGIFYRGGA---EQKIRKYLIDNNYVETVIALPPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T+IA  + +LS  K + +    Q I+A+        +     ++ DD    I+ I+
Sbjct: 389 LFYGTSIAVNILVLSKHKPDTQT---QFIDASG--EDFFKKETNNNVLTDDHIAHIVSIF 443

Query: 457 VSRE 460
             +E
Sbjct: 444 ADKE 447


>gi|218767944|ref|YP_002342456.1| putative type I restriction-modification system protein [Neisseria
           meningitidis Z2491]
 gi|121051952|emb|CAM08258.1| putative type I restriction-modification system protein [Neisseria
           meningitidis Z2491]
          Length = 514

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|309379401|emb|CBX21968.1| putative DNA adenine methyltransferase subunit of Type I
           restriction/modification system [Neisseria lactamica
           Y92-1009]
          Length = 513

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 188/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       R F   +SNPP+   W    D            RF P   L   S  
Sbjct: 279 LGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ 
Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 439

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 440 LFADKADVPH 449


>gi|110597490|ref|ZP_01385777.1| type I restriction-modification system, M subunit [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341034|gb|EAT59505.1| type I restriction-modification system, M subunit [Chlorobium
           ferrooxidans DSM 13031]
          Length = 815

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 190/484 (39%), Gaps = 73/484 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W++ ++L G    + +   +L    ++ +                   
Sbjct: 15  MALKKSELYSSLWQSCDELRGGMDASQYKDYVLVLLFVKYVSD----------------K 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            + +         G SF       +  L   T+  + +   I     +A  + +  DF+ 
Sbjct: 59  YAGVRFAEITVPPGASFS-----DMVALKGKTDIGDQINKKILGPLASANKLSDMPDFND 113

Query: 123 TIAR---LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAED 176
                   +K   L  +   F    L         D ++ + YE+L+R F +E  +    
Sbjct: 114 DTKLGSGKDKVDTLTNLIAIFENPALDFSKNRAEGDDILGDAYEYLMRHFATESGKSKGQ 173

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  +   ++   +      +     T+YDPTCG+G  L    +         + 
Sbjct: 174 FYTPAEVSRIMAKIIGIHNAPTTSNT-----TVYDPTCGSGSLLLKVGD---------EA 219

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------K 290
              +  +GQE +  T  +    M++         + +  I+QG+TL+  LF        K
Sbjct: 220 AARVTLYGQEKDAATSGLARMNMILHN-------NPTAEIKQGNTLANPLFFDADSGDLK 272

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELP 349
            F Y ++NPPF    +     ++    +   GRF   G+P    G   +L+H+   L+  
Sbjct: 273 TFDYVVANPPFSD--KSWSKGIDP--FDDPFGRFRHFGVPPAKQGDYAYLLHIIRSLKST 328

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+ A +L    LF G A   E++IR  L+    I+ ++ LP +LF+ T I   + +
Sbjct: 329 ----GKGACILPHGVLFRGNA---EADIRSKLVIMKYIKGVIGLPANLFYGTGIPACIIV 381

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           +  +    R+G + +I+A+  +     +G K R + D    +I+D++       K+SRM+
Sbjct: 382 IDKKDAHTRKG-IFMIDASAGFM---KDGPKNR-LRDMDLHRIVDVFSRELEIPKYSRMV 436

Query: 469 DYRT 472
               
Sbjct: 437 GIEE 440


>gi|317009142|gb|ADU79722.1| type I restriction-modification system, M subunit [Helicobacter
           pylori India7]
          Length = 530

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/582 (21%), Positives = 215/582 (36%), Gaps = 89/582 (15%)

Query: 1   MTEFTGSA---------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--- 48
           M     +            L N IWK A +L G     DF + +L     R +   +   
Sbjct: 1   MENTQNTQANESSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHY 60

Query: 49  --EPTRSA---------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             +  R             E+  +     I+ + F       F N  + +        T 
Sbjct: 61  INKEERERDPSFDYANLSDEEAESTRKGFIEEKGFFIPPSALFCNALKNAPDNEDLNVTL 120

Query: 98  NNLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148
            N+ + I   S      +N K +F D D +S     +   +   L KI +   G++L   
Sbjct: 121 QNIFTEIEKSSLGTPSEENVKGLFADLDVNSNKLGSSHKTRVEKLTKILQAIGGMQLGDY 180

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K       
Sbjct: 181 LKSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK------- 233

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      + D              GQE+   T+ +C   M +  +   
Sbjct: 234 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-- 284

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL        + F   +SNPP+  KW  D   +          RF P
Sbjct: 285 ---YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDSSPI-----LITDERFSP 336

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   +   + F MH+ + L       G AAIV     L+ G A   E++IR +L++ 
Sbjct: 337 AGVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKE 389

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  +
Sbjct: 390 NFIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKL 442

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +  R +IL  Y+ R+  K F  + D          + +     + L        E    
Sbjct: 443 KEHNREKILKTYIERKEVKHFCALAD----------IEQIKENDYNLSVNRYVEQEDTKE 492

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
              +  L+     +I + + +Q       +S +KE  +   A
Sbjct: 493 VIDIKALN----SEIPQIVEKQSALRNSLDSIIKELEEGQNA 530


>gi|291044252|ref|ZP_06569961.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
 gi|291011146|gb|EFE03142.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
 gi|317163870|gb|ADV07411.1| putative type I restriction-modification system methyltransferase
           protein [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 514

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N  +E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
              + + I   F DF +T +RL     +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+   W    D            RF P   L   S    
Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++
Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 442

Query: 457 VSRENGKF 464
             + +   
Sbjct: 443 ADKADVPH 450


>gi|240016160|ref|ZP_04722700.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA6140]
 gi|260440928|ref|ZP_05794744.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI2]
          Length = 513

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 --DNAKAIFEDFD-FSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
              + + I   FD F +T +RL     +K   L  + K  + ++    +     +  + Y
Sbjct: 120 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 180 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+   W    D            RF P   L   S    
Sbjct: 281 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 336 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++
Sbjct: 389 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 441

Query: 457 VSRENGKF 464
             + +   
Sbjct: 442 ADKADVPH 449


>gi|187476895|ref|YP_784919.1| restriction-modification system, modification (methylase) subunit
           [Bordetella avium 197N]
 gi|115421481|emb|CAJ47989.1| restriction-modification system, modification (methylase) subunit
           [Bordetella avium 197N]
          Length = 924

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 100/498 (20%), Positives = 186/498 (37%), Gaps = 68/498 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--PTRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    +     ++  +   
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDRLVAFASAEDFTDEDFSAVT 61

Query: 65  SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117
                      +   ++   ++   +     S  T  ++   +++FS     N K +FE 
Sbjct: 62  EEDTETVEHFKSNLGYFIAHKHLFSTWLDQTSDFTVGDVREALSAFSRLIHPNHKRLFEG 121

Query: 118 F--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L          +  + +    I +        V+  IYE+LI  F +  
Sbjct: 122 IFKTLETGLSKLGDTAAKQTKAIGDLLQLIKDIPMDGKQGY-DVLGFIYEYLIGMFAASA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YD T G+G  L +    +A  
Sbjct: 181 GKKAGEFYTPHEVSVLMSEVIAHHLKDR------ETIQIYDSTSGSGSLLLNIGQAIAKH 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286
                    +  + QEL+  T+ +    +++R +       L  NI  +   TL  D   
Sbjct: 235 MGD---KDSIKYYAQELKENTYNLTRMNLVMRGI-------LPGNIVTRNADTLEDDWPY 284

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                    +        +SNPP+ +KW+      +         RF  GL   S     
Sbjct: 285 FDEQDPVNSYNPLYLDAVVSNPPYSQKWDPLHKDADPR-----YARF--GLAPKSKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G     E  IR+ L+END +E I+ LP+++
Sbjct: 338 FLLHDLYHLKP----NGIMAIVLPHGVLFRGGE---EGVIRKQLIENDHLETIIGLPSNI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L  ++       V  ++A+  +        K   +     ++I D+ +
Sbjct: 391 FFGTGIPTVILVLRQKRESS---DVLFVDASKGFAKE----GKNNKLRACDIKKITDVVI 443

Query: 458 SRENGK-FSRMLDYRTFG 474
           +R     FSR++      
Sbjct: 444 ARATVPGFSRLVPKTELQ 461


>gi|319901495|ref|YP_004161223.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
 gi|319416526|gb|ADV43637.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
          Length = 783

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/479 (21%), Positives = 189/479 (39%), Gaps = 72/479 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + + + +W + + L G    + +   +L    ++ L                   
Sbjct: 1   MAIKKSQIYSTLWNSCDALRGSMDASQYKDYVLMILFIKYLSD----------------- 43

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDF 118
             + +   F    G  F   S++ L   G  +    +   + +  +       +    +F
Sbjct: 44  KESDEDSIFTIPDGCRF---SDFVLLK-GDDHIGEQINKKLEAIKEANAMFLNRLALPNF 99

Query: 119 DFSSTIARLEK-AGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174
           +  S + + ++    L  +   F   +L         D ++ + YE+L++ F +E  +  
Sbjct: 100 NDPSKLGKPKEMRETLSNLIAAFESEDLDFSKNRTADDDILGDAYEYLMKNFAAESGKSK 159

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V  +   +L         E      T+YDPTCG+G  L  A+          
Sbjct: 160 GQFYTPAEVSRVMAKML------HLTEFTSPSTTIYDPTCGSGSLLLRAI---------G 204

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----K 290
           + P    P+GQE +  T ++ +  ML+  ++       +  I+QG T++   FT     K
Sbjct: 205 ETPNGATPYGQEKDNSTASLAILNMLLHGVD-------TATIEQGDTINSPEFTEGGQLK 257

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKLELP 349
            F  C++NPPF  K        +         R+   L P    G   FL+HL   ++  
Sbjct: 258 TFDVCVANPPFSTKSWLGAAGKDDAV----YHRWTAELCPPDKCGDYAFLLHLIASMKP- 312

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
             G GR A +L    LF G A   E EIR+ ++    IE IV LP ++FF T I   + +
Sbjct: 313 --GTGRGACILPHGVLFRGNA---EYEIRKHIIRQGWIEGIVGLPANIFFGTGIPASIIL 367

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           ++ +    R+G +  ++A D +     +G K R + +   ++I+D + +R +       
Sbjct: 368 INKQGAANRKG-IFFVDAKDGFV---KDGNKNR-LREQDIKRIVDTWNARHDVPNYAKF 421


>gi|297380050|gb|ADI34937.1| type I restriction-modification system, M subunit [Helicobacter
           pylori v225d]
          Length = 527

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 124/567 (21%), Positives = 214/567 (37%), Gaps = 80/567 (14%)

Query: 2   TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48
                S     L N IWK A +L G     DF + +L     R +   +           
Sbjct: 6   NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERER 65

Query: 49  EPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
           +P+        E+  +     I+ + F       F N  + + +      T  N+ + I 
Sbjct: 66  DPSFDYALLSDEEAESAKKDLIEEKGFFIPPSALFCNVLKNAPTNEDLNVTLQNIFNEIE 125

Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
             S      +N K +F D D +S     +   +   L KI +   G++L         V 
Sbjct: 126 KSSLGFESEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQKSGIDVF 185

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG
Sbjct: 186 GDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCG 237

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      + D              GQE+   T+ +C   M +  +          +
Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286

Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL        + F   +SNPP+  KW  D + +          RF P   L   +
Sbjct: 287 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGDSNPI-----LINDERFSPAGVLAPKN 341

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   ES+IR +L++N+ I+ ++A
Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---ESKIREYLVKNNFIDCVIA 394

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L   K ++       I+A++ +        K+  + +  + +I
Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASEEFVKE----GKKNKLKEHNKEKI 447

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L  Y  R+  K    L           + +     + L        E       +  L+ 
Sbjct: 448 LQTYTERKAIKHFSALAN---------IEKIKENDYNLSVNRYVEQEDTKEIIDIKALN- 497

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539
               +I + + +Q       E+ +KE 
Sbjct: 498 ---GEISQIVEKQSVLRNSLENIIKEL 521


>gi|194098143|ref|YP_002001191.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae NCCP11945]
 gi|193933433|gb|ACF29257.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae NCCP11945]
          Length = 514

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N  +E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
              + + I   F DF +T +RL     +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+   W    D            RF P   L   S    
Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++
Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 442

Query: 457 VSRENGKF 464
             + +   
Sbjct: 443 ADKADVPH 450


>gi|325202378|gb|ADY97832.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M01-240149]
          Length = 513

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 187/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +       F N + E   +   +T  +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++    I+ 
Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIADIVK 439

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 440 LFADKADVPH 449


>gi|257051192|ref|YP_003129025.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940]
 gi|256689955|gb|ACV10292.1| N-6 DNA methylase [Halorhabdus utahensis DSM 12940]
          Length = 493

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 130/533 (24%), Positives = 210/533 (39%), Gaps = 56/533 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +   L + ++K A+ +      T++   ILP    + +    E  R    E+Y   G
Sbjct: 1   MSLTLDELDSHLFKCADIIRDAVDSTEYKDFILPLVYYKTISDNFEVQREKYVEEY---G 57

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA-----IFEDF 118
             + +  +   V     Y    Y    L       N++  I    D  +      +   F
Sbjct: 58  DEHANRPNIYDVP----YVPDGYLWDDL--RAVNENVDEAINDAFDALREANDGEVEGVF 111

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                         L ++ ++ S I+L  D+VP  ++   Y  L+R F  E  +    F 
Sbjct: 112 RADYVAEDALTDDRLTRLIEHLSTIDLDNDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFF 171

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L   LL   +D           T +DPT G+GG L +A  H  D       P 
Sbjct: 172 TPPHIVELMVRLLAPFED---------GDTFHDPTVGSGGMLVEAATHYRDEQG--GDPS 220

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHY 294
            L   GQE+ P+  A+    + I  L        S  I++  +L +  F       +F Y
Sbjct: 221 KLTFTGQEINPDIAAIAKMNLSIHGL--------SGRIEREDSLLRPQFTENGELTKFDY 272

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNG 352
            L+N PF   W+KD      E ++   GRF     LP+   G   F+MH+A +L    N 
Sbjct: 273 VLANFPFSADWQKD------ELQDDTYGRFDWHEKLPRADRGDYAFIMHMAEQL----NE 322

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+AAIV+    LF       ES  R  +LENDL+EAIV LP +LF   +I + + +L+ 
Sbjct: 323 TGQAAIVIPHGVLFR----KHESRYREPMLENDLVEAIVGLPENLFQNNSIPSAILLLNT 378

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYR 471
            K  ER G+VQ I+A D   +   E   +  + D+    +++ +       + SR +   
Sbjct: 379 DKPAEREGEVQFIHAAD--EAFYRELSNQNELTDEGVAHVVENFRDWTTEERVSRTVSIE 436

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                   +   L +     +  +   E   T R+L          + + M  
Sbjct: 437 EIRENDYNLNIALYVDTTEPEEEIDVAEELATLRELQAERDEIEARMDQHMEA 489


>gi|194335867|ref|YP_002017661.1| type I restriction-modification system, M subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308344|gb|ACF43044.1| type I restriction-modification system, M subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 544

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 111/515 (21%), Positives = 188/515 (36%), Gaps = 82/515 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           MTE   +   +   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTE--QNQKQMGTTLWGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGTDF 58

Query: 59  ---------------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-- 101
                          Y    G + + E  +++  + +    +Y   ++       + E  
Sbjct: 59  PDSREQPGTTPLQLWYNNNPGDSAEFEKQMRLKVH-YVIQPQYLWGSIAEMARTQDGELL 117

Query: 102 -------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147
                   YI   SF+   + +F + + SS   +L     ++   L  I    +   L  
Sbjct: 118 HTLQKAFDYIENESFASTFQGLFSEINLSS--EKLGKHYTDRNAKLCTIITKIAE-GLAG 174

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            +     + + YE+LI +F +   + A +F TP+ +  + +A++              + 
Sbjct: 175 FSTDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQQISSILSAIVTLDSQEPSSGKKKYLI 234

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ D  CG+G  L +    +   G           +GQE    T+ +    ML+  ++  
Sbjct: 235 SVLDFACGSGSLLLNVRKKMGQYGIGK-------IYGQESNITTYNLARMNMLLHGVK-- 285

Query: 268 PRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
              D    I  G TL  D            K F   ++NPPF  +WE            G
Sbjct: 286 ---DSEFEIFHGDTLLNDWEMLREANPAKKKHFDAVVANPPFSYRWELTDA-------LG 335

Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           +  RF   GL   S     FL+H    L       G  AI+L    LF G     E  IR
Sbjct: 336 DDVRFKNYGLAPKSAADFAFLLHGFQYLAKE----GTMAIILPHGVLFRGGV---EERIR 388

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             LL++  I+ ++ LP +LFF T I   + +L   K       V  INA++ +      G
Sbjct: 389 TKLLKDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINASEHFEK----G 441

Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           K++  +  D   +I++ Y  R   + +SR +    
Sbjct: 442 KRQNRLRQDDIDKIVETYQFRTEEERYSRRVSMDE 476


>gi|254804703|ref|YP_003082924.1| putative type I restriction-modification system DNA methylase
           [Neisseria meningitidis alpha14]
 gi|254668245|emb|CBA05075.1| putative type I restriction-modification system DNA methylase
           [Neisseria meningitidis alpha14]
          Length = 514

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +       F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       R F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDGRPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L       GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYLSSR----GRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDASSFFKKETN----NNVLTEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|315506715|ref|YP_004085602.1| type i restriction-modification system, m subunit [Micromonospora
           sp. L5]
 gi|315413334|gb|ADU11451.1| type I restriction-modification system, M subunit [Micromonospora
           sp. L5]
          Length = 522

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 118/505 (23%), Positives = 193/505 (38%), Gaps = 73/505 (14%)

Query: 1   MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRS 53
           M   T     A L   IW+ A DL G     DF   +L     R +   L     E  R 
Sbjct: 1   MAPTTKEAQRAELHKTIWRIANDLRGSVDGWDFKTYVLGILFYRFISENLTAYVNEGERR 60

Query: 54  AVREKYLAFGGSNIDLESFVKV--AGYSFYN-TSEYSLSTLGSTNTRNNLESYIA----- 105
           A    +     ++   E   K   A   FY   SE  ++      +  +L   +      
Sbjct: 61  AGEADFDYTKLTDKQAEVGRKATVAEKGFYILPSELFVNVRKRAASDPDLNETLERVFRN 120

Query: 106 --------SFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVP 151
                      D+ K +F+D D       +T+AR  +   L K+      ++L   +   
Sbjct: 121 IEGSAVGTDSEDDLKGLFDDLDVNSGKLGNTVAR--RNEKLVKLLNAVGDLKLGDFNNHA 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + S   +   +F TP++V  L   + +    ++ K        +YD
Sbjct: 179 IDAFGDAYEYLMTMYASSAGKSGGEFFTPQEVSELLARITVVGKKSVNK--------VYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L      +                GQE+   T+ +    M +  +       
Sbjct: 231 PACGSGSLLLQFAKVLGQKNVRQG------FFGQEINLTTYNLARINMFLHDI-----GY 279

Query: 272 LSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              NI  G TL       +  F   +SNPP+  KW  D + +          RF P   L
Sbjct: 280 EQFNIAHGDTLLDPAHWDEEPFEAIVSNPPYSTKWPGDSNPL-----LINDPRFSPAGVL 334

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+   L       G AAIV     L+ G A   E +IR++L++N+ ++
Sbjct: 335 APKSKADLAFTMHMLRWL----AVNGTAAIVEFPGVLYRGGA---EQKIRKYLVDNNYVD 387

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ LP DLFF   IAT + +L   K +     V  I+A+  +   +  G K   +  + 
Sbjct: 388 TVIQLPPDLFFGVTIATCIIVLKKSKND---NNVLFIDASAEF---KRVGNK-NKLLPEH 440

Query: 449 RRQILDIYVSRENGK-FSRMLDYRT 472
           R+ ILD +V+R +   F+R++    
Sbjct: 441 RKMILDAFVARRSVDHFARLVPNTD 465


>gi|187779296|ref|ZP_02995769.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC
           15579]
 gi|187772921|gb|EDU36723.1| hypothetical protein CLOSPO_02892 [Clostridium sporogenes ATCC
           15579]
          Length = 529

 Score =  283 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 99/501 (19%), Positives = 190/501 (37%), Gaps = 80/501 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----------TR 52
              +  S+ N +W  A +L G    +++   IL F   R L    E              
Sbjct: 1   MNNNIKSITNKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEEYLLKNNVIDVIEG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTL-----GSTNTRNNLESYIAS 106
            ++ E Y +    +   +    ++    Y  +   +  +L      S    ++ ++   +
Sbjct: 61  ESINESYNSQVDESELEDYLQDISASLGYAIAPKDTWQSLIDKINDSQVIPSDYQTIFDN 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ NA          + +F D +   +    +  E+A  L  I K    IE   +   D 
Sbjct: 121 FNKNAELNKEAVKDFRGVFNDINLGDSRLGSSTNERAKSLNNIVKLVDSIEYKGNDGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++ +  +         +  +YDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILAKVVTEAVE-----KSDELFNVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +            +   GQEL   T+ +    +++  +  +     +
Sbjct: 235 MGSGSLLLTVGQELPKGTP-------MKYFGQELNTTTYNLARMNLMMHGISYNNMVLSN 287

Query: 274 KNIQQGSTLSKDLFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D   G         + F   ++NPP+  KW+ D+  +       +  RF
Sbjct: 288 A-----DTLESDWPDGPDAKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRF 335

Query: 325 GP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L   S     F++H    L       G  AIVL    LF G A   E +IR  L+
Sbjct: 336 SEYGKLAPASKADYAFILHSIYHLNKT----GTMAIVLPHGVLFRGAA---EGKIRETLI 388

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             + ++ I+ LP +LF+ T+I T + +L   +  +    +  I+A++ +   +N    + 
Sbjct: 389 GKNYLDTIIGLPANLFYGTSIPTVILVLKKNRENK---DILFIDASNDFEKNKN----QN 441

Query: 443 IINDDQRRQILDIYVSRENGK 463
            + D+   +I+  Y  R++ +
Sbjct: 442 NLRDEDIDKIIKTYKERKDVE 462


>gi|237743940|ref|ZP_04574421.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 7_1]
 gi|229432971|gb|EEO43183.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 7_1]
          Length = 520

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 117/547 (21%), Positives = 204/547 (37%), Gaps = 77/547 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           ++     A L   IW  A DL G     DF + +L     R +   L         E   
Sbjct: 3   SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGN 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA- 111
           S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N  
Sbjct: 63  SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFINVRKKADKDENLNVTLDTIFKNIE 121

Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
                       K +F+D D +S   +L     ++   L  +      ++L         
Sbjct: 122 NSANGTESESDLKGLFDDIDVNS--NKLGGTVVKRNENLVNLINGVGDMKLGDYQENTID 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP 
Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +       K        GQE+   T+ +C   M +  ++ D      
Sbjct: 232 CGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF---- 281

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L  
Sbjct: 282 -DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLAP 335

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I
Sbjct: 336 KSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDCI 388

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+IAT + +L   K      K+  I+ +  +  + N       + +    
Sbjct: 389 IQLPDNLFYGTSIATCIMVLKKSK---IDNKILFIDGSKEFVKVTNS----NKMTEKHID 441

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            I++ +  REN ++   L      Y +I V     +S           E    +     +
Sbjct: 442 DIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKIDIFELNKEI 496

Query: 511 HQSFWLD 517
            +    +
Sbjct: 497 QRIVARE 503


>gi|209554541|ref|YP_002284449.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
 gi|209542042|gb|ACI60271.1| type I restriction enzyme [Ureaplasma urealyticum serovar 10 str.
           ATCC 33699]
          Length = 510

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 108/560 (19%), Positives = 219/560 (39%), Gaps = 64/560 (11%)

Query: 1   MTEFTGSA---ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRS 53
           M     +      +AN +W + ++L G+     +  +I+    L+ +      A+   + 
Sbjct: 1   MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKD 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAG-----YSFYN-TSEYSLSTLGSTNTRNNLESYIASF 107
             ++K+     ++ DL S     G      + +N  S ++  +             I + 
Sbjct: 61  KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +   K +F     S  + +      L  + + F+  +       + ++  IYE+ +  F 
Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDF--SQFNEDLVGRIYEYFLGEFF 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +   +F TP+ VV L   +L           P     +YDP CGTGG    A N++
Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +        +GQE + +T  +    +L+     +       +     T  +DL 
Sbjct: 224 HEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGS---EDTFKEDLH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G++F   ++NPPF  K    ++ +  E       RF  G+P  ++ +  +L+H+ +KL 
Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKLN 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+A ++L++  L +      ES +R+ ++E ++++AI++LP  LF+ T I+  +
Sbjct: 331 SR----GKAGVILANGSLSSSNKE--ESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W  +  K  E    V  I A+ +         K R +  D   +I ++Y   E G+    
Sbjct: 385 WFFNKNKENE---NVLFIEASKMGELKTK---KLRFLTKDNISKIKNVYDKHEQGE---- 434

Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            D    G+ +   +   +   + L        E ++   +          + L  +  ++
Sbjct: 435 -DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIKGLQEELSVLFDEL 493

Query: 527 YPYGWAESFVKESIKSNEAK 546
                     KESIK    K
Sbjct: 494 EDLIPQ---AKESIKKVLEK 510


>gi|284052297|ref|ZP_06382507.1| Type I site-specific deoxyribonuclease HsdM [Arthrospira platensis
           str. Paraca]
 gi|78773875|gb|ABB51224.1| type I RM system M subunit [Arthrospira platensis]
 gi|291569503|dbj|BAI91775.1| type I site-specific methyltransferase [Arthrospira platensis
           NIES-39]
          Length = 513

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 119/490 (24%), Positives = 193/490 (39%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT  T   A+L   IW+ A D+ G     DF + +L     R +            +   
Sbjct: 1   MT-STQQRAALQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTSYAEGDDDGID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFY--------NTSEYSLSTLGST--NTRNNLESYIA 105
           Y     S+I  +     +K  GY  Y          S  +  +L +        +ES   
Sbjct: 60  YAKLSDSDIPDDFKDDAIKTKGYFIYPSQLFATIAASANTNESLNTDLAAIFAAIESSAN 119

Query: 106 SF--SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
            +    + K +F   DF +T  RL     +K   L  + K  +G++          +  +
Sbjct: 120 GYPSEPDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGLAGLDFGGFDASHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQQVSRLIAQLAMHQQTSVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H  D             +GQE+    + +    M +  +  +       NIQ
Sbjct: 230 SLLLQAKKHFDDHRIEEG------FYGQEINHTNYNLARMNMFLHNINYNKF-----NIQ 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL+   F  ++ F   +SNPP+  KW                 RF P   L   S  
Sbjct: 279 LGNTLTDPHFGDEKPFDAIVSNPPYSVKWVGSDHPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E++IR++L++N+ +E ++AL 
Sbjct: 334 DFAFVLHCLSYLSSS----GRAAIVCFPGIFYRGGA---EAKIRKYLVDNNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  K +      Q I A+ L+    N       + DD   +I+ 
Sbjct: 387 PNLFFGTTIAVTVLVLSKDKPDSTT---QFIYASGLFKKETN----NNTLTDDHIAEIMG 439

Query: 455 IYVSRENGKF 464
           ++ S+EN   
Sbjct: 440 VFDSKENVDH 449


>gi|317180611|dbj|BAJ58397.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 527

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 123/573 (21%), Positives = 212/573 (36%), Gaps = 80/573 (13%)

Query: 2   TEFTGSA--ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRS 53
                S     L N IWK A +L G     DF + +L     R +   +      E  + 
Sbjct: 6   NNNQASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYINKEERKR 65

Query: 54  AVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                      E+        I+ + F       F N  + + +      T  N+ + I 
Sbjct: 66  DPSFDYALLSDEEAEGAKEGLIEEKGFFIPPSALFCNVLKNAPNNDDLNVTLQNIFNEIE 125

Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
             S      +N K +F D D +S     +   +   L KI +   G++L         V 
Sbjct: 126 KSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYLKSGIDVF 185

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   +F TP++V  L   + L   +++ K        +YDP CG
Sbjct: 186 GDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VYDPCCG 237

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      + D              GQE+   T+ +C   M +  +          +
Sbjct: 238 SGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFH 286

Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL        + F   +SNPP+  KW  D + +          RF P   L   +
Sbjct: 287 IVHGDTLLDPKHKDDEPFDAIVSNPPYSTKWAGDNNPI-----LINDERFSPAGVLAPKN 341

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   E++IR +L++ + I+ ++A
Sbjct: 342 AADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGHA---EAKIREYLVKENFIDCVIA 394

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L   K ++       I+A+  +        K+  + +  R +I
Sbjct: 395 LPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLKEHNREKI 447

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L  Y+ R+  K    L           + +     + L        E       +  L+ 
Sbjct: 448 LQTYIERKEVKHFCALAS---------MEQIKENDYNLSVNRFVEQEDTKEIIDIKALN- 497

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
               +I + + +Q       +  +KE  +   A
Sbjct: 498 ---SEISQIVEKQSALRNSLDCIIKELEEGQNA 527


>gi|326561037|gb|EGE11402.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis 7169]
 gi|326564412|gb|EGE14640.1| putative type I restriction enzyme HindVIIP M protein [Moraxella
           catarrhalis 12P80B1]
          Length = 545

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 99/580 (17%), Positives = 193/580 (33%), Gaps = 96/580 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE---------- 57
              L   +WK A+ L  +    ++  ++L F  L+ +       +  ++           
Sbjct: 12  LNKLDQDLWKAADTLRKNLDAANYKHIVLGFIFLKYISDTFTDFQGKLKANIANPESDIY 71

Query: 58  ---------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------------- 95
                    ++     + ++   +   A   F+  ++     +   +             
Sbjct: 72  LDPSLFEPSEFEQILSAELEERDYY-TAENIFWVPTQARWENIKDNSKLNAGDELPWGGK 130

Query: 96  ------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                   ++    I   +   K + +          +     L  +   FS  +     
Sbjct: 131 FKNVSILLDDAFEAIEQENPKLKGVLQRIAGFGVPDEM-----LRGLTDLFSRTDFTRPM 185

Query: 150 VP--------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                       ++ ++YE+ + +F     +    + TP+ +V L   +L          
Sbjct: 186 YNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIVEML---------- 235

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  +YDP  G+GGF       +     +      +  +GQE  P T  + V  M I
Sbjct: 236 -EPYSGRVYDPAMGSGGFFVQTDRFIQAHQGNRNA---ISVYGQESNPTTRKLAVMNMAI 291

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           R +  D         +   TL   L   K+  + ++NPPF             E   G  
Sbjct: 292 RGIPFDFGD------KPEDTLLNPLHIDKKMDFVMANPPFNM------KEWWSESLAG-D 338

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R+  G P   + +  +L H+   L       G+ A++L++  +      SGE EIR+ +
Sbjct: 339 PRWAYGTPPQGNANFAWLQHMIYHLSPK----GKMALLLANGSM--SSQTSGEGEIRKNI 392

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +  DL+EA++ALP  LF  T I   +WI++  K    +G+V  INAT +           
Sbjct: 393 ITADLVEAMIALPNQLFTNTQIPACIWIINKAKAR--KGEVLFINATQIGYMKDRV---L 447

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           R    D   +I D Y + +        +   F Y    +    +  F+L           
Sbjct: 448 RDFTVDDIAKISDTYHNWQKQD--GYENIPAFCYSA-TLDEIAKNDFVLTAGRYV---GA 501

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           +T             ++   + +Q       E  + E++K
Sbjct: 502 VTEEDDGVPFSDKMQELTACLNEQFKQERELEQQITENLK 541


>gi|308063356|gb|ADO05243.1| type I restriction-modification system, M subunit [Helicobacter
           pylori Sat464]
          Length = 529

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 124/581 (21%), Positives = 211/581 (36%), Gaps = 88/581 (15%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49  --EPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
             E  +      Y        +   E  +K  G+ F   S    + L +  T  +L   +
Sbjct: 61  NKEERKRDPSFDYAKLSDEEAEGAKEGLIKEKGF-FIPPSALFCNVLKNARTNEDLNVTL 119

Query: 105 -ASFSD------------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148
              F++            N K +F D D +S     +   +   L KI +    ++L   
Sbjct: 120 QNIFNEIEKSSLGFESEENVKGLFADLDVNSNKLGSSHKNRVEKLAKILQAIGDMQLGDY 179

Query: 149 TVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K       
Sbjct: 180 QKSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK------- 232

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L      + D              GQE+   T+ +C   M +  +   
Sbjct: 233 -VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-- 283

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL        + F   +SNPP+  KW  + + +          RF P
Sbjct: 284 ---YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPI-----LINDERFSP 335

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   +   + F MH+ + L       G  AIV     L+ G A   E++IR  L++ 
Sbjct: 336 AGVLAPKNAADLAFTMHMLSYLSNS----GTCAIVEFPGVLYRGNA---EAKIREHLVKE 388

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  +
Sbjct: 389 NFIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKL 441

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
            +  R +IL  Y  R+  K    L           + +     + L        E     
Sbjct: 442 KEHNREKILQTYTERKTIKHFSALAN---------MEKIKENDYNLSVNRFVEQEDTKEI 492

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
             +  L+     +I + + +Q       ES +KE  +   A
Sbjct: 493 IDIKALN----GEISQIVEKQSALRNSLESIIKELEEGQNA 529


>gi|224826952|ref|ZP_03700050.1| type I restriction-modification system, M subunit [Lutiella
           nitroferrum 2002]
 gi|224600785|gb|EEG06970.1| type I restriction-modification system, M subunit [Lutiella
           nitroferrum 2002]
          Length = 544

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 122/586 (20%), Positives = 207/586 (35%), Gaps = 99/586 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
           MT+F      L N +W  A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1   MTDFEK--QKLGNTLWTIADQLRGAMNADDFRDYMLAFLFLRYLSDNYEAAAKKELGADY 58

Query: 60  LAFGGSN--------------IDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--- 101
                 +                 E   ++     Y     Y    +       + E   
Sbjct: 59  PELEPEDRLSPLSFWYADNAVDVPEFEKQMRRKVHYVIEPQYLWGNIAEMARTQDDELLS 118

Query: 102 ------SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
                  YI   SF+   + +F + + +S   +L     E+   L KI    +   L   
Sbjct: 119 TLQSGFKYIEEESFASTFRGLFSEINLAS--DKLGKTYAERNARLCKIIAEIAK-GLGQF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +     + + YE+LI +F +   + A +F TP+ +  + +A++              + +
Sbjct: 176 STDSDTLGDAYEYLIGQFAAGSGKKAGEFYTPQRISDILSAIVTLDSQEPATGKRSHLDS 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +  + +           I   HGQE    T+ +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRHRM-------GPHGIGKIHGQEKNITTYNLARMNMLLHGVK--- 285

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D   +I  G TL  +             +F   ++NPPF  +WE  +         GE
Sbjct: 286 --DSEFDIFHGDTLLNEWDMLRETNPAKMPKFDAVVANPPFSYRWEPSEA-------LGE 336

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L+      G  AI+L    LF G A   E+ IR 
Sbjct: 337 DTRFKNYGLAPKSAADFAFLLHGFHFLKQD----GVMAIILPHGVLFRGGA---EARIRT 389

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL +  I+ ++ LP +LFF T I   + +L   K       V  INA + +      GK
Sbjct: 390 KLLNDGHIDTVIGLPANLFFSTGIPVCILVLKKCKKP---DDVLFINAAEHFEK----GK 442

Query: 440 KRRII--NDD-------QRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
           ++  +   D+          +I+D Y  R E  ++S          RR+ +    +  F 
Sbjct: 443 RQNQLLRTDEMPSGGIGHIEKIIDTYQYRKEEPRYS----------RRVSMEEIEKNDFN 492

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
           L+ +             L  +H+       +          + +  
Sbjct: 493 LNISRYVSTAETEEEIILGNVHEQLLSLDKQIKAATEKHNAFLKEL 538


>gi|313668698|ref|YP_004048982.1| type I restriction-modification system protein [Neisseria lactamica
           ST-640]
 gi|313006160|emb|CBN87622.1| putative type I restriction-modification system protein (ec
           2.1.1.72) [Neisseria lactamica 020-06]
          Length = 514

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 187/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEI-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       R F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDSRPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G     E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGT---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|71900226|ref|ZP_00682364.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
 gi|71729999|gb|EAO32092.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
          Length = 527

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 121/510 (23%), Positives = 208/510 (40%), Gaps = 78/510 (15%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EPTR 52
           M+       A L   IW+ A DL G     DF   +L     R +   L       EP  
Sbjct: 1   MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQEPRT 60

Query: 53  SAVREK--YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100
              ++   Y     +  +      V    FY         + +      N    L     
Sbjct: 61  GNEKDDFDYAQLSDARAESGRAETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120

Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146
               S I S S+ + K +F+D D +S  ++L     ++   L K+ +       +  E  
Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLEAIGDLPLTSSEGG 178

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +  + YE+L++ + S   +   +F TP++V  L T + +     + K      
Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG+G  L    N V   G           +GQE+   T+ +C   M +  +  
Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +       +I  G TL+       + F   +SNPP+  KW+ D +A+          RF 
Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334

Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   L   S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++
Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           N+ ++A++ LP DLFF T IAT + +L   K +        ++A+ L+      G K   
Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440

Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           ++   +++ILD + +R+N + F+R++D   
Sbjct: 441 LSTAHQKKILDGFTARQNIEHFARLVDNSD 470


>gi|196037385|ref|ZP_03104696.1| type I restriction-modification system, M subunit [Bacillus cereus
           NVH0597-99]
 gi|196031627|gb|EDX70223.1| type I restriction-modification system, M subunit [Bacillus cereus
           NVH0597-99]
          Length = 526

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 120/572 (20%), Positives = 216/572 (37%), Gaps = 86/572 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------------- 47
           T      + L   IW  A+D+ G     DF + +L     R +                 
Sbjct: 9   TNEGAQRSELHRKIWAIADDVRGAVDGWDFKQYVLGILFYRFISENMTAFFNQAEHEAGD 68

Query: 48  LEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNTRNNLE 101
           LE   + +   E    F  + ++ + F  +    F N  + S       +   N    +E
Sbjct: 69  LEFDYAKLSDAEAEKDFRPNTVEDKGFFILPSQLFENVVKTSRTNEDLNIDLANIFKAIE 128

Query: 102 SYIASFSD--NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDR 153
           +    F+   + K +F   D  +T  RL     EK   L  I    + I+  H +     
Sbjct: 129 ASAIGFASESDIKGLFA--DLDTTSNRLGGIVAEKNKRLADILCGIAEIDFGHFEDNDID 186

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+LI  + S   +   +F TP+ V  L   L++D            I  +YDPT
Sbjct: 187 AFGDAYEYLISNYASNAGKSGGEFFTPQSVSRLLARLVMDGKV--------KINKVYDPT 238

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L        +             +GQE+      +    M +  +  +      
Sbjct: 239 CGSGSLLLQMKKQFEEHIIEDG------FYGQEINITNFNLARMNMFLHNINYN-----H 287

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G TL   +   ++ F   +SNPP+  KW    D            RF P   L  
Sbjct: 288 FSIKRGDTLLNPMHNDEKPFDAIVSNPPYSIKWVGADDPT-----LINDERFAPAGKLAP 342

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F+MH  + L       GRAAIV      +   A   E  IR++L++N+ ++ +
Sbjct: 343 KSKADFAFIMHSLSYLSSK----GRAAIVCFPGIFYRAGA---EQTIRKYLVDNNFVDCV 395

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           +ALP +LFF T+IAT + +L+  K E    K   I+A+  +     +G    ++      
Sbjct: 396 IALPENLFFGTSIATNILVLAKNKIE---NKTLFIDASREF----KKGTNNNVLEPKNIE 448

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
            I+  +  R++ ++ S+++D            + +   + L  +     E       ++ 
Sbjct: 449 NIVSAFRDRDDIEYFSKLVDN----------EKIVESEYNLSVSTYVEKEDTREKININE 498

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           L++    +I + +++        +  +KE  K
Sbjct: 499 LNR----EIAETVIKIDELRASIDEIMKELSK 526


>gi|171920731|ref|ZP_02931943.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|185178769|ref|ZP_02964571.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024396|ref|ZP_02997059.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518458|ref|ZP_03003945.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188524187|ref|ZP_03004251.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195867477|ref|ZP_03079481.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198273583|ref|ZP_03206119.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225550744|ref|ZP_03771693.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225551327|ref|ZP_03772273.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|171903476|gb|EDT49765.1| HsdM [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|184209382|gb|EDU06425.1| HsdM [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018667|gb|EDU56707.1| HsdM [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188998124|gb|EDU67221.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|195659966|gb|EDX53346.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 12 str. ATCC 33696]
 gi|195660953|gb|EDX54206.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 9 str. ATCC 33175]
 gi|198250103|gb|EDY74883.1| type I restriction-modification system, M subunit [Ureaplasma
           urealyticum serovar 4 str. ATCC 27816]
 gi|225379142|gb|EEH01507.1| HsdM [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379898|gb|EEH02260.1| HsdM [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 510

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 108/560 (19%), Positives = 219/560 (39%), Gaps = 64/560 (11%)

Query: 1   MTEFTGSA---ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRS 53
           M     +      +AN +W + ++L G+     +  +I+    L+ +      A+   + 
Sbjct: 1   MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKD 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAG-----YSFYN-TSEYSLSTLGSTNTRNNLESYIASF 107
             ++K+     ++ DL S     G      + +N  S ++  +             I + 
Sbjct: 61  KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +   K +F     S  + +      L  + + F+  +       + ++  IYE+ +  F 
Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDF--SQFNEDLVGRIYEYFLGEFF 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +   +F TP+ VV L   +L           P     +YDP CGTGG    A N++
Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +        +GQE + +T  +    +L+     +       +     T  +DL 
Sbjct: 224 HEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGS---EDTFKEDLH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G++F   ++NPPF  K    ++ +  E       RF  G+P  ++ +  +L+H+ +KL 
Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKLN 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+A ++L++  L +      ES +R+ ++E ++++AI++LP  LF+ T I+  +
Sbjct: 331 SR----GKAGVILANGSLSSSNKE--ESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W  +  K  E    V  I A+ +         K R +  D   +I ++Y   E G+    
Sbjct: 385 WFFNKNKENE---NVLFIEASKMGELKTK---KLRFLTKDDISKIKNVYDKHEQGE---- 434

Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            D    G+ +   +   +   + L        E ++   +          + L  +  ++
Sbjct: 435 -DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIKGLQEELSVLFDEL 493

Query: 527 YPYGWAESFVKESIKSNEAK 546
                     KESIK    K
Sbjct: 494 EDLIPQ---AKESIKKVLEK 510


>gi|308389007|gb|ADO31327.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha710]
 gi|325135951|gb|EGC58561.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis M0579]
 gi|325207870|gb|ADZ03322.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis NZ-05/33]
          Length = 514

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +       F N + E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 121 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 179 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 231 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 280 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 335 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++    I+ 
Sbjct: 388 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGSFFKKETN----NNVLTEEHIADIVK 440

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 441 LFADKADVPH 450


>gi|325129941|gb|EGC52740.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis OX99.30304]
          Length = 513

 Score =  283 bits (723), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +       F N + E   +   +T  +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G
Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 279 LGDTLTNPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++    I+ 
Sbjct: 387 PNLFYGTGIAVNILVLSKHK---DNTDIQFIDAGSFFKKETN----NNVLTEEHIADIVK 439

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 440 LFADKADVPH 449


>gi|289168442|ref|YP_003446711.1| type I restriction-modification system DNA methylase [Streptococcus
           mitis B6]
 gi|288908009|emb|CBJ22849.1| type I restriction-modification system DNA methylase [Streptococcus
           mitis B6]
          Length = 523

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 119/503 (23%), Positives = 191/503 (37%), Gaps = 68/503 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------A 47
           ++       L   IW  A+D+ G     DF + IL     R +                 
Sbjct: 3   SKENAERKELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISEHMADYFDRAEHEAGD 62

Query: 48  LEPTRSAVR--EKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101
           LE   + +   E    F    ++ + F  +    F N  E       L     N    +E
Sbjct: 63  LEFRYAELSDQEAEQDFKPGTVEDKGFFILPSQLFENVVENASQNENLNEDLANIFQAIE 122

Query: 102 SYIASF--SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHP-DTVPDRVM 155
                F   D+ K +F++ D  S I      EK   L  I    + I     +       
Sbjct: 123 KSAIGFKSEDDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDIDAF 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + S   +   +F TP+ V  L   L++   D         I  +YDPTCG
Sbjct: 183 GDAYEFLISNYASNAGKSGGEFFTPQTVSKLLARLVMVGKD--------KINKVYDPTCG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L        D              GQE+    + +    M +  +  +     + +
Sbjct: 235 SGSLLLQMKKQYEDHILEDG------FFGQEINMTNYNLARMNMFLHNINYN-----NFD 283

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL       ++ F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 284 IKRGDTLLNPQHLEEKPFDAIVSNPPYSVKWVGDGDPT-----LINDDRFAPAGKLAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  N L       GRAAIV      + G A   E  IR++L++N+ +EA+++
Sbjct: 339 KADFAFIMHSLNHLSNK----GRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAVIS 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L+  K E    K   I+A+  +    N      ++ D     I
Sbjct: 392 LPDNLFFGTSIATTILVLAKNKLE---NKTLFIDASKEFKKETN----NNVLTDSNIEHI 444

Query: 453 LDIYVSRENGKF-SRMLDYRTFG 474
           ++++ + +N  + S ++     G
Sbjct: 445 VELFSNYQNVDYKSALVGNDVIG 467


>gi|330957222|gb|EGH57482.1| type i restriction enzyme EcoR124II M protein [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 519

 Score =  283 bits (723), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 117/490 (23%), Positives = 187/490 (38%), Gaps = 66/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           MT  T   A+L   IW  A D+ G     DF + +L     R +                
Sbjct: 1   MT-STQQRAALQRQIWAIANDVRGAVDGWDFKQYVLGTLFYRFISENFVDYITGGDSSVN 59

Query: 50  -PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTNTRNNLESYI 104
            P+         A     I  + +       F N     S             + +ES  
Sbjct: 60  YPSMEDDDPLISAAKDDAIKTKGYFIAPSQLFSNVAAKASTNDSLNTDLKRIFDAIESSA 119

Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
             ++   + I   F DF +T  RL     +K   L  + K  S +E          +  +
Sbjct: 120 NGYASE-QDIKGLFADFDTTSNRLGNTVADKNKRLADVLKGVSKLEFGSFDASHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQE+   T+ +    M +  +  D       +IQ
Sbjct: 231 SLLLQAKKHFDAHVIQDG------FFGQEVNHTTYNLARMNMFLHNINYDKF-----DIQ 279

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL    F   + F   +SNPP+  KW   +D            RF P   L   S  
Sbjct: 280 LGDTLRHPHFGDDKPFDAIVSNPPYSVKWIGSEDPT-----LINDDRFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 335 DFAFVLHALSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +L+  KT+      Q I+A+ L+     +G    ++ D    +I+ 
Sbjct: 388 PNLFFGTTIAVNILVLAKNKTDTTT---QFIDASALF----KKGTNNNLLEDAHVERIMQ 440

Query: 455 IYVSRENGKF 464
           ++ S+EN   
Sbjct: 441 VFDSKENVDH 450


>gi|269468493|gb|EEZ80151.1| type I site-specific deoxyribonuclease [uncultured SUP05 cluster
           bacterium]
          Length = 437

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 179/471 (38%), Gaps = 70/471 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAFGG 64
             L   +W  A +L G     +F   IL F   + L   +    + +  +    YL+   
Sbjct: 7   KKLEQKLWDIANELRGKMDADEFRDYILGFIFYKYLSEKILSYANKLLAEDGITYLSLDE 66

Query: 65  SNIDLESFVKVAGYS-------FYNTSEYSLSTLG------STNTRNNLESYIASFSDNA 111
            + D   ++             F   SE             +     +L   + +   + 
Sbjct: 67  DSADGAEYLDAIKEEAVEKLGYFLKPSELFGEIAKRGNGDTNNFILEDLTQILRNVEQST 126

Query: 112 KAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                + DF      L+            K  L+ K+  +   I    D +   V+ + Y
Sbjct: 127 MGYESEDDFGHLFEDLDLTSTKLGRTEEAKNTLIAKVLFHLDQINFDLDNIESDVLGDAY 186

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI +F +   + A +F TP+ V  +   ++              ++++YDPTCG+G  
Sbjct: 187 EYLIGQFAAGAGKKAGEFYTPQQVSKVLAKIVTTGK--------SKLKSVYDPTCGSGSL 238

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      V D         +   +GQEL   T+ +    M++  +          +I+Q 
Sbjct: 239 LLRVAKEVDD---------VSNFYGQELNRTTYNLARMNMILHDIH-----YRKFDIKQE 284

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T+       +RF   ++NPPF   W  +   +  +  +         L   +     F+
Sbjct: 285 DTIEHPQHIDERFEAVVANPPFSAHWSANPLHMSDDRFSQY-----GKLAPKTKADFAFV 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLF 398
            H+ ++L    +  G  AIVL    LF G A   E  IR++L+E  + ++A++ LP ++F
Sbjct: 340 QHMIHQL----DENGTMAIVLPHGVLFRGAA---EGHIRKYLIEDKNYLDAVIGLPANIF 392

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + T+I T + +   +K  E    +  I+A++ +  ++     +  + D+  
Sbjct: 393 YGTSIPTCVLVF--KKCREDSSNILFIDASNEFEKVKA----QNYLTDENV 437


>gi|223042077|ref|ZP_03612253.1| putative type I restriction-modification system, methyltransferase
           subunit [Actinobacillus minor 202]
 gi|223017152|gb|EEF15588.1| putative type I restriction-modification system, methyltransferase
           subunit [Actinobacillus minor 202]
          Length = 840

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/494 (22%), Positives = 184/494 (37%), Gaps = 72/494 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  +W +A DL G    +++   IL F   + L       +     +        
Sbjct: 2   NKQQLAATLWASANDLRGKMDASEYKNYILGFLFYKFLS----EHQENYLVQNE-VSFEE 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDFDF 120
           +D +S   +     Y  ++  L     TN   N      +   I  F++N     +  DF
Sbjct: 57  LDSDSIETIKEDLGYFIAQEDLYRTWLTNIGENKWKLSHVTDAINHFNENLYDS-QKDDF 115

Query: 121 SSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
               + L            +K   + K+ +  +GI++  D     V   IYE+LI +F  
Sbjct: 116 EGVFSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKIT-DNSEYDVFGYIYEYLIAQFAM 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP  V  +   ++ D               +YDPT G+G  L      V 
Sbjct: 175 ASGKKAGEFYTPNQVSRIMAEIVADEL------RQKEQCAVYDPTAGSGSLLLTVSEAVN 228

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +    +   GQE    T+ +    +L+R ++          ++   TL  D   
Sbjct: 229 RN----EHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMI-----LRNADTLKSDWPY 279

Query: 289 GKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFL 339
           G+             ++NPP+  KW+ ++          +  RF   G    +     FL
Sbjct: 280 GEINGEDTPLFVDCVVANPPYSAKWDTERA--------DKDVRFKEYGTAPATKADYAFL 331

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G     E +IR  LL+   I+AI+ LP  +F 
Sbjct: 332 LHSLYHLKSD----GIMAIVLPHGMLFRGNE---EEKIRTKLLQRRQIDAIIGLPAGIFT 384

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + IL     + +   V  I+A+  +   +N      ++ +   ++ILD+Y  R
Sbjct: 385 NTGIPTIVMILRK---QPKHNNVLFIDASQGFRKEKNS----NVLRERDIKKILDVYRKR 437

Query: 460 E-NGKFSRMLDYRT 472
           E    FS + D   
Sbjct: 438 EVQAGFSHLADLAE 451


>gi|229089986|ref|ZP_04221238.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-42]
 gi|228693333|gb|EEL47042.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-42]
          Length = 530

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/485 (21%), Positives = 197/485 (40%), Gaps = 68/485 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLA-- 61
            A L + ++  A++L       ++   +L     + L   L            E+Y    
Sbjct: 1   MAELNSKLFSAADNLRSKMDAAEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTQE 60

Query: 62  ---------FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASFS- 108
                        +I  +    +     Y+     L  + +   + N   L     +F  
Sbjct: 61  KQAQLYRDLLAAEDIKNDLIETLVDTLGYDIEPDYLFNVLTNQAKQNTFQLNDLNKAFIA 120

Query: 109 -----DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                D    +F+D D  S        ++   + ++ K  + +++        V+ + YE
Sbjct: 121 LSTKYDQFNGLFDDVDLKSKKLGSDDQQRNITITEVLKKLNDVDVM--GHDGDVIGDAYE 178

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI +F SE  + A +F TP +V  +   +     ++        + +++DPT G+G  +
Sbjct: 179 FLIGQFASEAGKKAGEFYTPHEVSDMMARIAAIGQES------KKLFSVFDPTMGSGSLM 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++   
Sbjct: 233 LNIRNYI-------NFPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR-----LRNAD 280

Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL+KD  T + + +   L NPP+  KW  D   ++         R+G  L   S     F
Sbjct: 281 TLNKDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLDDSR----FNRYG-KLAPKSKADFAF 335

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LF
Sbjct: 336 LLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLF 388

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + IL   +T      V  I+A++ +T     GK +  ++ +   +I++ Y  
Sbjct: 389 FGTSIPTTVIILKKNRTTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETYKK 441

Query: 459 RENGK 463
           RE+ +
Sbjct: 442 REDVE 446


>gi|331087343|ref|ZP_08336411.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408369|gb|EGG87844.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 520

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/554 (20%), Positives = 199/554 (35%), Gaps = 71/554 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTRS 53
           T+       L   IW  A++L G     DF   +L     R +   L            +
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYINSGEADAGN 63

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
           A  +          +    +      F   SE   +         NL   +     + + 
Sbjct: 64  AGFDFAKIADEDAEEAREGLVEEKGFFILPSELFCNVRADAANDENLNETLERVFRHIEE 123

Query: 114 -------------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154
                        +F+D+D +S   +L     ++   L K+      + L          
Sbjct: 124 SAQGSESESDFAGLFDDYDVNS--NKLGATVAKRNEKLVKLLNGVGEMNLGDVKDHSIDA 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP C
Sbjct: 182 FGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYDPAC 233

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A   +       K       +GQE+   T+ +C   M +  +  D       
Sbjct: 234 GSGSLLLKAEKIL------GKDAIRNGFYGQEINITTYNLCRINMFLHDVGFDKF----- 282

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           NI    TL        + F   +SNPP+  KW    + +          RF P   L   
Sbjct: 283 NIACEDTLLAPQHWDDEPFELIVSNPPYSIKWAGTDNPL-----LINDPRFSPAGVLAPK 337

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   M F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+
Sbjct: 338 SKADMAFIMHSLSWLAP----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCII 390

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP++LFF T+IAT + ++   K +    K   I+AT     + N       +  +   +
Sbjct: 391 QLPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATSECVKVTN----NNKLTPENIDR 443

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D +  RE  + F+ +  Y         +     +     +  +  ++ +   +++   
Sbjct: 444 IVDGFAKREEVEHFAHLASYEEVSGNDYNLSVSTYVEAEDTREKIDIVKLNAEIKEIVAR 503

Query: 511 HQSFWLDILKPMMQ 524
            Q    +I K + +
Sbjct: 504 EQVLRDEIDKIIAE 517


>gi|297582533|ref|YP_003698313.1| type I restriction-modification system, M subunit [Bacillus
           selenitireducens MLS10]
 gi|297140990|gb|ADH97747.1| type I restriction-modification system, M subunit [Bacillus
           selenitireducens MLS10]
          Length = 531

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/559 (19%), Positives = 215/559 (38%), Gaps = 73/559 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--------------PTRSA 54
           A L   ++  A++L      +++   +L     + L   L                T   
Sbjct: 3   AELNAKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLIKVVELADESLDTYDTPDK 62

Query: 55  VREKYLA-FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASFS-- 108
             E Y       +   +    V     Y+     L  + +   + N   L     +F   
Sbjct: 63  QTELYEELLSDKDTKEDLIATVVDTLGYDIEPPHLFNVLAEQAKKNVFQLNDLNKAFIQL 122

Query: 109 ----DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               D    +F+D D  S        ++   +  + K  + ++L        V+ + YE+
Sbjct: 123 STKYDAFSGLFDDVDLQSKKLGSDDQQRNVTVTDVIKKLNDVDLI--GYEGDVIGDAYEY 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  + + ++    +           +++DPT G+G  + 
Sbjct: 181 LIGQFASEAGKKAGEFYTPHMVSDMMSQIVAIGQED------KKWFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  ++ +  R     ++ G T
Sbjct: 235 NVRNYL-------NHPDKVKYHGQELNTTTFNLAKMNLILHGVDPEEMR-----VRNGDT 282

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L+KD  T + + +   + NPP+  KW  D   ++         R+G  L   S     F+
Sbjct: 283 LNKDWPTDEPYTFDSVVMNPPYSAKWSADDTFLDDSR----FNRYG-KLAPKSKADFAFV 337

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 338 LHGYYHLKET----GTMAIVLPHGILFRGAA---EGTIRQKLLEDGSIYAVIGMPPNLFF 390

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + IL   ++      V  I+A+  +      GK +  ++ +   +++D Y  R
Sbjct: 391 GTSIPTTVLILKKNRSTR---DVLFIDASRDFIK----GKNQNKLSKENIEKVVDTYNKR 443

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           E+ + ++ +  +         +  P    ++        ++      ++  + +     +
Sbjct: 444 ESVEKYAHLATFEEIKENDYNLNIP---RYVDTFEEEEPVDMKAVGTEMKEIQEKKQ-AL 499

Query: 519 LKPMMQQIYPYGWAESFVK 537
            K + + I    ++E   +
Sbjct: 500 QKSLFEDISSLQYSEEDAE 518


>gi|291562471|emb|CBL41287.1| type I restriction system adenine methylase (hsdM)
           [butyrate-producing bacterium SS3/4]
          Length = 523

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 115/555 (20%), Positives = 200/555 (36%), Gaps = 73/555 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------- 48
           T+       L   IW  A++L G     DF   +L     R +   L             
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYVNSGEIDAGN 63

Query: 49  -EPTRSAVREKYLAFGGSNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
            +   + + ++        +  E  F  +    F N      +     N    LE     
Sbjct: 64  TDFDFAKMADENAEEAREGLVEEKGFFILPSELFCNV---RSNAADDENLNETLERVFRH 120

Query: 107 FSDNAKAIFEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHP-DTVPDR 153
             ++AK    + DF+      +            +   L K+      ++L         
Sbjct: 121 IEESAKGSEAESDFAGLFDDYDVNSNKLGSTVAKRNEKLVKLLNGVGEMKLGDVKDHSID 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP 
Sbjct: 181 AFGDAYEYLMMMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYDPA 232

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A   +       K       +GQE+   T+ +C   M +  +  D      
Sbjct: 233 CGSGSLLLKAEKVL------GKDAIRNGFYGQEINITTYNLCRINMFLHDVGFDKF---- 282

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NI    TL        + F   +SNPP+  KW  D++ +          RF P   L  
Sbjct: 283 -NIACEDTLISPQHWDDEPFELIVSNPPYSIKWAGDENPL-----LINDPRFAPAGVLAP 336

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   M F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I
Sbjct: 337 KSKADMAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCI 389

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP++LFF T+IAT + ++   K +    K   I+AT+    + N       +  +   
Sbjct: 390 IQLPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATNECVKVTN----NNKLTPEHIE 442

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
            I+D +  RE  K F+ +  Y         +     +     +  +  ++ +   +++  
Sbjct: 443 HIVDAFTKREEVKHFAHLASYEEVSSNDYNLSVSTYVEVEDTREKIDIVKLNAEIKEIVA 502

Query: 510 LHQSFWLDILKPMMQ 524
             Q    +I K +  
Sbjct: 503 REQVLRDEIDKIIAD 517


>gi|21674693|ref|NP_662758.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
 gi|21647900|gb|AAM73100.1| type I restriction system adenine methylase [Chlorobium tepidum
           TLS]
          Length = 518

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 125/546 (22%), Positives = 212/546 (38%), Gaps = 65/546 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +  +Y    
Sbjct: 5   QQRAELQRRIWQIANDVRGTVDGWDFKQYVLGALFYRFISENFAAHMEAGDDGIRYAELP 64

Query: 64  GSNIDLE---SFVKVAGYSFY-------NTSEYSLSTLGSTNTRNNLESYIASFS--DNA 111
            S I  E     +K  GY  Y         +  + +   +T+      +  +S +   + 
Sbjct: 65  DSVITPELKDDAIKTKGYFIYPSQLFANVVARANTNDSLNTDLAAIFTAIESSANGYPSE 124

Query: 112 KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164
           + I   F DF +T  RL     +K   L  + K  + ++  P D     +  + YE LI 
Sbjct: 125 QDIKGLFADFDTTSNRLGNTVKDKNQRLAAVLKGVAELDFGPFDDAHIDLFGDAYEFLIS 184

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP+ V  L   L L    ++ K        +YDP CG+G  L  A 
Sbjct: 185 NYAANAGKSGGEFFTPQHVSRLIARLALHGQKSVNK--------IYDPACGSGSLLLQAK 236

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              GQE    T+ +    M +  +  D       NIQ G+TL +
Sbjct: 237 KPFDERLIEDG------FFGQESNHTTYNLARMNMFLHNINYDKF-----NIQLGNTLLE 285

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F  ++ F   +SNPP+  KW    D            RF P   L   S     F++H
Sbjct: 286 PHFADEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFVLH 340

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +  GRAAIV      + G A   E++IR++L++N+ +E ++AL  +LFF T
Sbjct: 341 ALHYL----SAKGRAAIVCFPGIFYRGGA---EAKIRQYLVDNNYVETVIALAPNLFFGT 393

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            IA  + +LS  K +      Q I+A+ L+    N      ++ D+   QI+ ++ S+E 
Sbjct: 394 TIAVNILVLSKHKPDTTT---QFIDASALFKKETN----NNVLLDEHIEQIMAVFASKEE 446

Query: 462 GKF---SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
                 S  L+        + V   +      +   +A+L A++             +D 
Sbjct: 447 VPHVAQSVPLERIAANNYNLSVSSYVEARDTREVVDIAQLNAELKTTVARIDELRKQIDA 506

Query: 519 LKPMMQ 524
           +   ++
Sbjct: 507 IVAEIE 512


>gi|119715342|ref|YP_922307.1| type I restriction-modification system, M subunit [Nocardioides sp.
           JS614]
 gi|119536003|gb|ABL80620.1| type I restriction-modification system, M subunit [Nocardioides sp.
           JS614]
          Length = 519

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/490 (22%), Positives = 187/490 (38%), Gaps = 70/490 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE- 57
           MT+       L   IW+ A DL G     DF   +L     R +   L     +      
Sbjct: 1   MTKEVE-RTELHRTIWRIANDLRGSVDGWDFKAYVLGMLFYRFISENLTAYLNKQERAAG 59

Query: 58  ----KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSDNA- 111
                Y     ++ +      V    FY   +   + +      + NL   +A    N  
Sbjct: 60  NPDFDYRHLSNADAEFGREETVKEKGFYILPQDLFANVRERARHDENLNETLARVFRNIE 119

Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
                       K +F+D D +S  ++L     ++   L K+      + L  +      
Sbjct: 120 ASSIGADSEEDFKGLFDDLDVNS--SKLGSTVAKRNEKLVKLLDAVGDLRLGHNGNTIDA 177

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + +       ++ TP++V  L   + +     + K        +YDP C
Sbjct: 178 FGDAYEYLMGMYAANAGRSGGEYYTPQEVSELLARIAVVGKTEVNK--------VYDPAC 229

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +                GQE+   T+ +C   M +  +  +       
Sbjct: 230 GSGSLLLKFDKVLGHENVRQG------YFGQEINLTTYNLCRINMFLHDINYEKF----- 278

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G TL+       + F   +SNPP+  KW  D D +          RF P   L   
Sbjct: 279 DIAHGDTLTDPAHWDDEPFEAIVSNPPYSTKWAGDADPL-----LINDPRFAPAGVLAPK 333

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F MH+ + L +     G AAIV     L+   A   E +IR++L++N+ ++ ++
Sbjct: 334 SKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRSGA---EQKIRKYLVDNNYVDTVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP DLFF T IAT + +L   K +    K   I+A+  +     +G K   +    +++
Sbjct: 387 QLPPDLFFGTTIATCIIVLKKSKAD---NKTLFIDASAEFI---RQGNK-NKMPAANQQR 439

Query: 452 ILDIYVSREN 461
           ILD + +RE+
Sbjct: 440 ILDAFSARED 449


>gi|268596452|ref|ZP_06130619.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|268603244|ref|ZP_06137411.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID1]
 gi|268681724|ref|ZP_06148586.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID332]
 gi|268550240|gb|EEZ45259.1| type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|268587375|gb|EEZ52051.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID1]
 gi|268622008|gb|EEZ54408.1| type I restriction-modification system protein [Neisseria
           gonorrhoeae PID332]
          Length = 514

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 2   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 60

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N  +E   +   +T  +    +  +S S
Sbjct: 61  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 120

Query: 109 --DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
              + + I   F DF +T +RL     +K   L  + K  + ++    +     +  + Y
Sbjct: 121 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 180

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 181 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 233 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNK-----FHIELG 281

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+   W    D            RF P   L   S    
Sbjct: 282 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 337 AFILHALNYL----SGRGRAAIVSFPGIFYCGGA---EQKIRQYLVEGNYVETVIALAPN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++
Sbjct: 390 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 442

Query: 457 VSRENGKF 464
             + +   
Sbjct: 443 ADKADVPH 450


>gi|256845972|ref|ZP_05551430.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294784903|ref|ZP_06750191.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
 gi|256719531|gb|EEU33086.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_36A2]
 gi|294486617|gb|EFG33979.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_27]
          Length = 520

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 120/560 (21%), Positives = 212/560 (37%), Gaps = 83/560 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           ++     A L   IW  A DL G     DF + +L     R +   L         E   
Sbjct: 3   SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEIEAGN 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA- 111
           S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N  
Sbjct: 63  SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIE 121

Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
                       K +F+D D ++   +L     ++   L  +      ++L         
Sbjct: 122 SSANGTESENDLKGLFDDIDVNN--NKLGGTVAKRNENLVNLINGVGDMKLGDYQENTID 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   ++ TP++V  L T + L     + K        +YDP 
Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +       K        GQE+   T+ +C   M +  ++ D      
Sbjct: 232 CGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF---- 281

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L  
Sbjct: 282 -DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLAP 335

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I
Sbjct: 336 KSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDGI 388

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+IAT + +L   K      KV  I+A+  +  + N       I +    
Sbjct: 389 IQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKITEKHID 441

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADITW 504
            I++ +  REN ++   L      Y +I V     +S             +  +E +   
Sbjct: 442 DIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKVDIVELNKEI 496

Query: 505 RKLSPLHQSFWLDILKPMMQ 524
            ++    +    +I K + +
Sbjct: 497 ERIVAREEELRKEIDKIIAE 516


>gi|240013720|ref|ZP_04720633.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae DGI18]
 gi|240080302|ref|ZP_04724845.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae FA19]
 gi|240117541|ref|ZP_04731603.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID1]
 gi|240120790|ref|ZP_04733752.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID24-1]
 gi|240123095|ref|ZP_04736051.1| Type I restriction enzyme EcoR124II M protein [Neisseria
           gonorrhoeae PID332]
          Length = 513

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/488 (21%), Positives = 187/488 (38%), Gaps = 63/488 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MTE     A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MTEM-QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS 108
                            + ++ +    G  F N + E   +   +T  +    +  +S S
Sbjct: 60  YAAMPDSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 --DNAKAIFEDFD-FSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
              + + I   FD F +T +RL     +K   L  + K  + ++    +     +  + Y
Sbjct: 120 GYPSEQGIKGLFDDFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  
Sbjct: 180 EYLISNYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  +       +I+ G
Sbjct: 232 LLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL+       + F   +SNPP+   W    D            RF P   L   S    
Sbjct: 281 DTLTNPKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +
Sbjct: 336 AFILHALNYL----SGRGRAAIVSFPGIFYCGGA---EQKIRQYLVEGNYVETVIALAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++
Sbjct: 389 LFYGTCIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLF 441

Query: 457 VSRENGKF 464
             + +   
Sbjct: 442 ADKADVPH 449


>gi|289449831|ref|YP_003475628.1| type I restriction-modification system subunit M [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184378|gb|ADC90803.1| type I restriction-modification system, M subunit [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 522

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/561 (20%), Positives = 204/561 (36%), Gaps = 75/561 (13%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-------EP 50
           MT  T        L   IW  A++L G     DF   +L     R +   +       E 
Sbjct: 1   MTLDTKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITNYINAGEI 60

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSD 109
                   Y      + +      V    F+         + +    + NL   +     
Sbjct: 61  EAGNTEFDYAQMSDDDAEEARQSLVEEKGFFILPSELFCNVKAKAKGDENLNETLEKVFR 120

Query: 110 NAKA-------------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTV 150
           + +              +F+DFD +S   +L     ++   L K+    + + +      
Sbjct: 121 HIEESAKGSESESDFAGLFDDFDVNS--NKLGSTVAKRNEKLCKLLDGVADMNIGDVKNH 178

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 + YE+L+  + S   +   +F TP DV  L T +       + K        +Y
Sbjct: 179 DIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRIGTVGKTEINK--------VY 230

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L  A   +       +       +GQE+   T+ +C   M +  +  D   
Sbjct: 231 DPACGSGSLLLKAEKVL------GRDKIRNGFYGQEINITTYNLCRINMFLHDIGFDKF- 283

Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               NI    TL        + F   +SNPP+  KW  D + +          RF P   
Sbjct: 284 ----NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGDDNPL-----LINDPRFAPAGV 334

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ +
Sbjct: 335 LAPKSKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLIDNNYV 387

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP++LFF T+IAT + +L   K +    K   I+AT+    + N       +   
Sbjct: 388 DCIIQLPSNLFFGTSIATCIMVLKKGKED---NKTLFIDATNECIKVTN----NNKLTRK 440

Query: 448 QRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +I+D + +R   + FS +  Y         +     +     +  +  ++ +   ++
Sbjct: 441 NMDKIVDCFANRREIEHFSHLATYDEIAENDYNLSVSTYVEAEDTREKIDIVKLNAEIKE 500

Query: 507 LSPLHQSFWLDILKPMMQQIY 527
           +    Q    D +  ++ +I 
Sbjct: 501 IVAREQ-VLRDEIDKIIGEIE 520


>gi|294781970|ref|ZP_06747302.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481781|gb|EFG29550.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 520

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/562 (21%), Positives = 216/562 (38%), Gaps = 84/562 (14%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57
           M        A L   IW  A DL G     DF + +L     R +   L     +  +  
Sbjct: 1   MDNKKEQERAELHRTIWSIANDLRGSVDGWDFKQYVLGILFYRYISENLTTYINKGEIEA 60

Query: 58  KYLAFGGSNI-DLESFVKVAGY----SFYNTSEYSLSTLGST------------NTRNNL 100
               F  +++ D ++ V          F+         +               N   N+
Sbjct: 61  GNPDFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLHNIFTNI 120

Query: 101 ESYIAS-FSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152
           E+      S+N  K +F+D D +S   +L     ++   L  +      ++L        
Sbjct: 121 ENSANGTESENDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP
Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +       K        GQE+   T+ +C   M +  ++ D     
Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L 
Sbjct: 282 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQI-----LINDSRFSPAGVLA 334

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ 
Sbjct: 335 PKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N       + +   
Sbjct: 388 IIQLPDNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNS----NKMTEKHI 440

Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADI 502
             I++ +  REN ++ S ++D     Y +I V     +S             +  +E + 
Sbjct: 441 NDIVEKFTKRENVEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNK 494

Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524
             +++    +    +I K + +
Sbjct: 495 EIQRIVAREEELRKEIDKIIAE 516


>gi|296100300|ref|YP_003620470.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154]
 gi|295831617|gb|ADG39501.1| hypothetical protein LKI_10611 [Leuconostoc kimchii IMSNU 11154]
          Length = 530

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 173/476 (36%), Gaps = 68/476 (14%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-----------------CALEPTRSAV 55
             IWK   +  G  + +++   I      + L                     E      
Sbjct: 9   ALIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQTWLDQQLRGETWASVWEQNPEKA 68

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                   G  I           +  N  +++++ +       N +          + IF
Sbjct: 69  AAFMQTKLGYVIQPGELFSDWQAAI-NVDQFNITNVADALVHFN-QGIQQGAKATFEGIF 126

Query: 116 EDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +D D +S  +RL          +    S I+         V+ ++YE+LI  F +     
Sbjct: 127 DDMDLTS--SRLGSNTQTRTKTLMDWISLIDQIELDEDADVLGDLYEYLIGMFAANSGAK 184

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP  V  +   +L    + +         +LYDP  G+G  L    +++     +
Sbjct: 185 AGEFYTPHQVSDIMARILTAGREDM------PTYSLYDPAMGSGSLLLTTASYMQ----N 234

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
             +   +  +GQE+   T+ +    +++  +E +       +I    TLS D   G    
Sbjct: 235 DGVRGAIKYYGQEVITTTYNLGRINLMMHGVEYNDI-----HIHNADTLSSDWPDGVQSG 289

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               + F   ++NPP+  KW+ D           +  RF  G+   S     FL H    
Sbjct: 290 VDSPRMFDAVMANPPYSLKWDNDN--------REDDPRFKSGIAPKSKADFAFLQHGLYH 341

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR AIVL    LF G A   E  IR+ LLEN  I A++ LP  +F  T I T
Sbjct: 342 LKQD----GRMAIVLPHGVLFRGAA---EGRIRQALLENRNISAVIGLPEKIFTNTGIPT 394

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            + IL   +T      V  I+A+  +   +N       +  +    I++ ++ RE+
Sbjct: 395 IIMILEKNRT---TDDVLFIDASKGFEKQKN----NNKLRQEDVDLIVETFLKRED 443


>gi|260771741|ref|ZP_05880660.1| type I restriction-modification system M subunit [Vibrio
           metschnikovii CIP 69.14]
 gi|260613325|gb|EEX38525.1| type I restriction-modification system M subunit [Vibrio
           metschnikovii CIP 69.14]
          Length = 869

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/492 (20%), Positives = 198/492 (40%), Gaps = 64/492 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVR-EKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L        T+  +  E   A  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQQVQFVTKQGMTPEDIKALN 61

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117
             + D   +++     F  Y+    +          +N+   +++F    S   K +FE 
Sbjct: 62  EEDADTVKYIQDNLGYFIAYDNLFSTWIDPTHDFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                   +++L ++       +  +      I ++       V+  IYE+LI +F +  
Sbjct: 122 IFTTLEKGLSQLGESAGKRTKAISDLLHLIKSIPMNGKQGY-DVLGYIYEYLIEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +    V   
Sbjct: 181 GKKAGEFYTPHEVSVLMSHIIAHELKH------KDTIEIYDPTSGSGSLLINIGEAV--- 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
           G + K    +  + QEL+ +T+ +    +++R +++   +      + G TL  D     
Sbjct: 232 GKYAKNKDSITYYAQELKDKTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ + W+      +         RF  GL   +     FL
Sbjct: 287 ENDPQGTYHALYVDAVVSNPPYSQAWDPSFKDSDPR-----YSRF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G   IVL    LF G     E EIR+ L+E + I+AI+ LP+++FF
Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIEQNHIDAIIGLPSNIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L   K + +   V +++A+  +        K   +     ++I+D  ++R
Sbjct: 393 GTGIPTVIIVL---KQKRQNTDVLIVDASKHFVKE----GKNNKLQASDIKRIVDAVINR 445

Query: 460 EN-GKFSRMLDY 470
           ++  KFS+++  
Sbjct: 446 DSIDKFSQVVSK 457


>gi|298736553|ref|YP_003729079.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|298355743|emb|CBI66615.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 523

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 120/572 (20%), Positives = 209/572 (36%), Gaps = 84/572 (14%)

Query: 1   MTEFTGSAA------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------ 48
           M     +         L N IWK A +L G     DF + +L     R +   +      
Sbjct: 1   MENNPNNNQAFLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINK 60

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYI-AS 106
           E  +      Y        +      +    F+        + L +     +L   +   
Sbjct: 61  EERKHDPSFDYAKLSDEEAERAREELIEEKGFFIPPSALFCNALKNAPNNEDLNVTLQNI 120

Query: 107 FSD------------NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVP 151
           F++            N K +F D D +S     +   +   L KI +   G++L      
Sbjct: 121 FNEIEKSSLGAPSEENVKGLFADLDVNSNKLGSSHKIRVEKLTKILEAIGGMQLGDYQQS 180

Query: 152 D-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        +Y
Sbjct: 181 GIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK--------VY 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG+G  L      + D              GQE+   T+ +C   M +  +      
Sbjct: 233 DPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN----- 281

Query: 271 DLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
               +I  G TL        + F   +SNPP+  KW  D + +          RF P   
Sbjct: 282 YSKFHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPL-----LINDERFSPAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   +   + F MH+ + L       G AAIV     L+ G A   E++IR +L++ ++I
Sbjct: 337 LAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + + 
Sbjct: 390 DCVIALPDNLFFGTSIATCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKER 442

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            R +IL  Y+ R+  K    L           + +     + L        E       +
Sbjct: 443 NREKILQTYIERKEVKHFSSLAN---------IEKIKENDYNLSVNRYVEQEDTKEIIDI 493

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
             L+     +I + + +Q       ES +KE 
Sbjct: 494 KALN----SEISQIVEKQSALRSSLESIIKEL 521


>gi|170717884|ref|YP_001784939.1| type I restriction-modification system, M subunit [Haemophilus
           somnus 2336]
 gi|168826013|gb|ACA31384.1| type I restriction-modification system, M subunit [Haemophilus
           somnus 2336]
          Length = 537

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/516 (19%), Positives = 191/516 (37%), Gaps = 88/516 (17%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTRSA 54
            +  ++   +W  A +L G    +++   IL F   R L    E               +
Sbjct: 2   SNVQTITGKLWAMANELRGTMDASEYKNYILAFMFYRYLSKHQELYLVDNHILDIEPSQS 61

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTL-----GSTNTRNNLESYIASFS 108
           V + YL         +    ++    Y    E +  +L      +    ++ ++   +F+
Sbjct: 62  VNDAYLTQATGEELQDYLQDISASLGYAINPEDTWDSLMRKIYNAEVMPSDYQALFDNFN 121

Query: 109 DNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            NA          + +F D +  ++    +  E+A  L  I K    IE   D     ++
Sbjct: 122 QNANLNEDAVLDFRGVFNDLNLGASHLGNSTNERAKSLGNIVKLVDEIEYKDDDG-RDIL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             IYE+LI +F +   +   +F TP  V  +   L+                 +YDPT G
Sbjct: 181 GEIYEYLIGQFAANAGKKGGEFYTPHQVSKILAKLVTLDVADN-----QETFLVYDPTMG 235

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L    N +            +  +GQEL   T+ +    +++  +        +  
Sbjct: 236 SGSLLLTVGNELPQSKP-------IKYYGQELNTTTYNLARMNLMMHGVSYKNMTLSNA- 287

Query: 276 IQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                TL  D   G           RF   ++NPP+  KW+  +       +  +  RF 
Sbjct: 288 ----DTLESDWPEGLDAQGIDQPLCRFDAVVANPPYSAKWDNHE-------RKLKDARFQ 336

Query: 326 P--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL- 382
           P   L   S     F++H    L       G  AIVL    LF G A   E +IR+ L+ 
Sbjct: 337 PFGALAPASKADYAFILHSLYHLGEH----GTMAIVLPHGVLFRGAA---EGKIRKALIG 389

Query: 383 ------ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
                 + + ++A++ LP +LF+ T+I T + +    +  +    +  I+A+  +     
Sbjct: 390 DNTSNAQGNYLDAVIGLPANLFYGTSIPTTILVFKKNRKNK---DILFIDASQDFDK--- 443

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            GK +  + D+  ++I+D Y +R+N      +    
Sbjct: 444 -GKNQNRLTDEHVQKIIDTYQARQNVDKYAYVASLE 478


>gi|71276002|ref|ZP_00652284.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Dixon]
 gi|71899052|ref|ZP_00681217.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
 gi|71163235|gb|EAO12955.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Dixon]
 gi|71731165|gb|EAO33231.1| Type I restriction-modification system M subunit [Xylella
           fastidiosa Ann-1]
          Length = 527

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 127/564 (22%), Positives = 220/564 (39%), Gaps = 80/564 (14%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA 54
           M+       A L   IW+ A DL G     DF   +L     R +   L        R  
Sbjct: 1   MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRT 60

Query: 55  VREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100
             EK    Y  F  +  +L     V    FY         + +      N    L     
Sbjct: 61  GTEKDDFDYAQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120

Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146
               S I S S+ + K +F+D D +S  ++L     ++   L K+         +  E  
Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGG 178

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +  + YE+L++ + S   +   +F TP++V  L T + +     + K      
Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG+G  L    N V   G           +GQE+   T+ +C   M +  +  
Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +       +I  G TL+       + F   +SNPP+  KW+ D +A+          RF 
Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334

Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   L   S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++
Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           N+ ++A++ LP DLFF T IAT + +L   K +        ++A+ L+      G K   
Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440

Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEA 500
           ++   +++ILD    R++ + F+R++D          +     ++    +    +  L +
Sbjct: 441 LSTAHQKKILDSLTVRQDIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNS 500

Query: 501 DITWRKLSPLHQSFWLDILKPMMQ 524
           DI             +D +   ++
Sbjct: 501 DIARIVARQAELRKQIDAIVADLE 524


>gi|238019005|ref|ZP_04599431.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748]
 gi|237864489|gb|EEP65779.1| hypothetical protein VEIDISOL_00867 [Veillonella dispar ATCC 17748]
          Length = 531

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/495 (20%), Positives = 194/495 (39%), Gaps = 72/495 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG---- 64
           A L   ++  A+ L G      +   +L     + L   L  +   V + Y +       
Sbjct: 3   AELNQKLFSAADSLRGKMSADQYKDYLLGLIFYKYLSDKLLES--TVVKAYKSLDEYNTV 60

Query: 65  ---SNIDLESFVKVAGYSF----------YNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
              + +     +      F          Y+     L +  +   ++N    +   +   
Sbjct: 61  AKQTELYKSYILDDKSKDFFIATMSDTLGYHIEPQYLFSELANAVKDNSFELVHLKNAFV 120

Query: 112 K---------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +          +F+D D  S    +   ++   + ++ K    +++        V+ + Y
Sbjct: 121 RLETAYKQFEGLFDDIDLDSKQLGVDANQRNITISEVIKKLDEVDVL--GHDGDVIGDAY 178

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI  F +   + A +F TP+ V  +   ++    +           T+YDPT G+G  
Sbjct: 179 EYLIGEFAAGSGKKAGEFYTPQQVSDMMAQIVTIGQEDT------PSFTVYDPTMGSGSL 232

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           + +   ++         P  +  HGQEL   T+ +    +++  + ++ +R     +  G
Sbjct: 233 MLNVRKYL-------NNPDRVQYHGQELNVTTYNLARMNLILHEVSAEDQR-----LHNG 280

Query: 280 STLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            TL+KD  T + + +   + NPP+   W  D   ++         R+G  L   S     
Sbjct: 281 DTLNKDWPTDEPYMFDSVVMNPPYSANWSADPTFMDDAR----FNRYG-KLAPKSKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +L
Sbjct: 336 FLLHGFYHLKTS----GTMAIVLPHGVLFRGAA---EGTIRKKLLEDGSIYAVIGMPANL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+I T + IL   +       V  I+A++ +T  +N    +  +  +  ++I+D Y 
Sbjct: 389 FFGTSIPTTVIILKKNRKGR---DVLFIDASNDFTKFKN----QNKLEPEHIKRIVDTYK 441

Query: 458 SRENGKFSRMLDYRT 472
           +RE+ +    L    
Sbjct: 442 NRESIEKYAYLASFE 456


>gi|86137460|ref|ZP_01056037.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp.
           MED193]
 gi|85825795|gb|EAQ45993.1| Type I site-specific deoxyribonuclease HsdM [Roseobacter sp.
           MED193]
          Length = 514

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 194/483 (40%), Gaps = 61/483 (12%)

Query: 4   FTGSAA--SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--Y 59
            TG      L   IW  A D+ G     DF + +L     R +         A  +   Y
Sbjct: 1   MTGQQQRDELHRQIWAIANDVRGAVDGWDFKQFVLGALFYRFISENFVNYADAGDDNVNY 60

Query: 60  LAFGGSNIDLESFVKV---AGYSFY-------NTSEYSLSTLGSTNTRNNLESYIASFS- 108
                S +  +  ++     GY  Y         S+ + +   +T+      +   S + 
Sbjct: 61  AGMSDSEVPDDFVIEAVKTKGYFIYPSQLFSNVVSQANTNDSLNTDLAAIFAAIEGSANG 120

Query: 109 -DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             + + I   F DF +T  RL     +K   L  + K  +G+ L  D     +  + YE 
Sbjct: 121 YPSEEDISGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLPLTFDDSQRDLFGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI+ + +   +   +F TP  V  L   + +     + K        ++DP CG+G  L 
Sbjct: 181 LIKNYAANAGKSGGEFFTPPHVSKLIAKIAIHGQTTINK--------IFDPACGSGSLLL 232

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A   + D G            GQE+   T+ +    M +  +  D       NIQ G+T
Sbjct: 233 QAKYFLKDHGVEDG------YFGQEINHTTYNLARMNMFLHNINYDKF-----NIQLGNT 281

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L+   F   + F   +SNPP+  KW+   D            RF P   L   S     F
Sbjct: 282 LTDPHFGDDKPFDAIVSNPPYSIKWKGSDDPT-----LINDERFAPAGVLAPKSKADFAF 336

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L    +  GRAA+V      + G A   E +IR++L++N+ +EA++AL  +LF
Sbjct: 337 VLHALSYL----SAKGRAALVCFPGIFYRGGA---EQKIRKYLVDNNYVEAVIALAPNLF 389

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T IA  + +L+  K   +   VQ I+AT      +        ++DD   +++ I+ S
Sbjct: 390 YGTTIAVNILVLAKNK---QNTDVQFIDATGEDFFDKKT--NNNEMSDDHIAEVMRIFDS 444

Query: 459 REN 461
           +EN
Sbjct: 445 KEN 447


>gi|237738765|ref|ZP_04569246.1| type I restriction-modification system [Fusobacterium sp. 2_1_31]
 gi|229423868|gb|EEO38915.1| type I restriction-modification system [Fusobacterium sp. 2_1_31]
          Length = 520

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 121/562 (21%), Positives = 216/562 (38%), Gaps = 84/562 (14%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57
           M        A L   IW  A DL G     DF + +L     R +   L     +  +  
Sbjct: 1   MDNKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGILFYRYISENLTNYINKGEIEA 60

Query: 58  KYLAFGGSNI-DLESFVKVAGY----SFYNTSEYSLSTLGST------------NTRNNL 100
               F  +++ D ++ V          F+         +               N   N+
Sbjct: 61  GNPDFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLHNIFTNI 120

Query: 101 ESYIAS-FSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152
           E+      S+N  K +F+D D +S   +L     ++   L  +      ++L        
Sbjct: 121 ENSANGTESENDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP
Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +       K        GQE+   T+ +C   M +  ++ D     
Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L 
Sbjct: 282 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQI-----LINDSRFSPAGVLA 334

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ 
Sbjct: 335 PKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N       + +   
Sbjct: 388 IIQLPDNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNS----NKMTEKHI 440

Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADI 502
             I++ +  REN ++ S ++D     Y +I V     +S             +  +E + 
Sbjct: 441 NDIVEKFTKRENVEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNK 494

Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524
             +++    +    +I K + +
Sbjct: 495 EIQRIVAREEELRKEIDKIIAE 516


>gi|163814568|ref|ZP_02205957.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759]
 gi|158450203|gb|EDP27198.1| hypothetical protein COPEUT_00719 [Coprococcus eutactus ATCC 27759]
          Length = 889

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/490 (21%), Positives = 193/490 (39%), Gaps = 71/490 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W + + L G    + +   IL    ++ +    +  +      +    
Sbjct: 1   MAVKKTELYSSLWASCDALRGGMDASQYKDYILTLLFMKYVTDKYKGQKYGDLTVFDKAN 60

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASF---SDNAKAIFE--D 117
             N D E   K  G SF          L +  N    ++  IA     ++  K + +   
Sbjct: 61  DPNPDPE---KRTGCSF-----DDFIALKNKKNIGEGIDKIIARLAEVNEGLKGVIDIAH 112

Query: 118 FDFSSTIARLEK-AGLLYKICKNFSGIELHPDTVP---DRVMSNIYEHLIRRFGSEVSEG 173
           F+  + I + ++    L K+   F   EL         D ++ + YE+L+R F SE  + 
Sbjct: 113 FNDEAKIGKDKEMVDKLTKLIAIFQRPELDFSKNKVEGDDIIGDAYEYLMRNFASESGKS 172

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP +V  +   ++                T+ DP CG+G  L  A+         
Sbjct: 173 KGQFYTPAEVSRILAKIIGIDKCTDHDA------TVCDPACGSGSLLIRAL--------- 217

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------ 287
            + P  +  +GQE +  T  +     ++           +  I  G+T S   F      
Sbjct: 218 AEAPFEISGYGQEKDGSTAGLAKMNAVLHN-------KATIRIMAGNTFSDPQFMKTDNP 270

Query: 288 -TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLAN 344
              +RF+Y ++NPPF  K   D           E GRF G G  P   +G   +LMH+  
Sbjct: 271 SELERFNYIVANPPFSLKNWSDG--------LKEFGRFSGYGDRPPEKNGDYAWLMHILK 322

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G+AA++L    LF G A   E+ IR+ +++   I+ I++LP +LF+ T I 
Sbjct: 323 TLKST----GKAAVILPHGVLFRGNA---EATIRQTIVDKGWIKGIISLPPNLFYGTGIP 375

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENG 462
             + ++     E R G + +I+A   +     +G K R + +    +I+  +  +   + 
Sbjct: 376 ACILVIDKEGAENRAG-IFMIDAGKGYV---KDGSKNR-LREQDIYRIVTTFNEQITTDP 430

Query: 463 KFSRMLDYRT 472
           K++R +  + 
Sbjct: 431 KYARFVPNKE 440


>gi|95928603|ref|ZP_01311350.1| type I restriction-modification system, M subunit [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135393|gb|EAT17045.1| type I restriction-modification system, M subunit [Desulfuromonas
           acetoxidans DSM 684]
          Length = 868

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 191/496 (38%), Gaps = 68/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   LE          + +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDKLEQFAKSQDFSAEDIRALS 61

Query: 65  SNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASFSD----NAKAIFED 117
            +             ++   E+   +    G      ++   +++FS     + K +FE 
Sbjct: 62  EDDTETVDFIKRNLGYFIAHEHLFSTWIEQGGDFEVAHVRDALSAFSRLIHTDHKDLFEG 121

Query: 118 F--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L          + ++ +    I          V+  IYE+LI  F +  
Sbjct: 122 IFKTLETGLSKLGDTAAKQTKAISELIQLIKDI-PMDGRQGYDVLGFIYEYLISMFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++ D      K        +YD T G+G  L +    +A  
Sbjct: 181 GKKAGEFYTPHEVSVLMSEIIADHVKGKEKID------IYDSTSGSGSLLLNIGKSIAKH 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286
             +           QEL+  T+ +    +++R +       L  NI  + G TL  D   
Sbjct: 235 MGNQGTIK---YFAQELKENTYNLTRMNLVMRGI-------LPTNIVTRNGDTLEDDWPF 284

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                    +        +SNPP+ ++W+ D    +         RF  GL   S     
Sbjct: 285 FDDNDPVNSYEPLYLDAVVSNPPYSQQWDPDHKDSDPR-----YSRF--GLAPKSKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G     E EIR+ L+E++ ++ I+ LP ++
Sbjct: 338 FLLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGEIRKNLIEDNHLDTIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L   K + ++  V +++A+  +        K   +     ++I D  +
Sbjct: 391 FFGTGIPTIILVL---KQKRQKNDVLIVDASKGFAKE----GKNNKLRACDIKKICDTVI 443

Query: 458 SRENGK-FSRMLDYRT 472
            R++   +SR++  + 
Sbjct: 444 KRQSVPCYSRLVSKKE 459


>gi|300780280|ref|ZP_07090136.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
 gi|300534390|gb|EFK55449.1| type I restriction-modification system DNA-methyltransferase
           [Corynebacterium genitalium ATCC 33030]
          Length = 395

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 156/417 (37%), Gaps = 53/417 (12%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-----EKYLAFGGSNI 67
           + +WK A+ L G    + +  ++L    L+ +  A +  R  +R     E          
Sbjct: 11  DTLWKAADKLRGSMDASQYKDIVLGLVFLKYVTDAFDARRQELRAELEEEGATEEETLEE 70

Query: 68  DLESFVKVAGYSFYNTSEYSLSTL------GSTNTRNNLESYIASFSDNAKAIF-EDFDF 120
             +    +    F+   +     L       +++     ++      + A+ +  ++   
Sbjct: 71  LEDRDAYLEKNVFWVAPKARWDYLQRHSKGKTSDAGGEFKAIGKLIDEAAETLMADNPSL 130

Query: 121 SSTIARLEKAG-----LLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFGSEVSEG 173
             T+     +       L ++   FS      +       ++  +YE+ + RF S   + 
Sbjct: 131 EGTLPHNYNSESVDQRRLGELVDLFSTTRFTAEGPERARDLLGEVYEYFLARFASAEGKR 190

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV     +L                 +YDP CG+GG    A   +      
Sbjct: 191 GGEFYTPRPVVRTLVEIL-----------EPTEGRVYDPCCGSGGMFVQAEKFLEAHDRD 239

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
              P  +  +GQEL   T  +    + I  L +    +     + G T ++D+  G    
Sbjct: 240 ---PSAIAIYGQELNERTWRMARMNLAIHALSAKGLGE-----RWGDTFARDIHPGVEMD 291

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y L+NPPF          ++   +N +  R+  G+P   + +  ++ H+ +KL      G
Sbjct: 292 YVLANPPFN---------IKDWVRNTDDTRWMYGVPPEKNANFGWMQHIISKLSPQGEAG 342

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              A   + +   N    SGE EIR+ +LE+D++  ++ LP  LF  T I   +W  
Sbjct: 343 VVMA---NGTMTSN---TSGEGEIRKNMLEDDIVSCVITLPAQLFRATGIPVCVWFF 393


>gi|229120553|ref|ZP_04249798.1| Type I restriction-modification system, M subunit [Bacillus cereus
           95/8201]
 gi|228662838|gb|EEL18433.1| Type I restriction-modification system, M subunit [Bacillus cereus
           95/8201]
          Length = 530

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/485 (21%), Positives = 198/485 (40%), Gaps = 68/485 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY---- 59
            A L + ++  A++L      +D+   +L  T  + L   L            E+Y    
Sbjct: 1   MAELNSKLFSAADNLRSKMDASDYKNYLLGLTFYKYLSDKLLEKVVEIADESLEEYNTQE 60

Query: 60  -------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIASFS- 108
                        +I  +    +     Y+     L  + +   + N   L     +F  
Sbjct: 61  TQTQLYKELLADEDIKNDLIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQLNDLNKAFIN 120

Query: 109 -----DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                D    +F+D D  +        ++   + ++ K  + +++        V+ + YE
Sbjct: 121 LSTKYDQFNGLFDDVDLKTKKLGSDDQQRNITITEVLKKLNDVDVL--GHNGDVIGDAYE 178

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI +F SE  + A +F TP +V  +   +     +         + +++DPT G+G  +
Sbjct: 179 FLISQFASEAGKKAGEFYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLM 232

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +  N++         P  +  HGQEL   T+ +    +++  ++ +  R     ++   
Sbjct: 233 LNIRNYI-------NYPDSVKYHGQELNTTTYNLAKMNLILHGVDKEDIR-----LRNAD 280

Query: 281 TLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           TL+KD  T + + +   L NPP+  KW  D   ++         R+G  L   S     F
Sbjct: 281 TLNKDWPTEEPYTFDSVLMNPPYSAKWSSDNTFLDDSR----FNRYG-KLAPKSKADFAF 335

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LF
Sbjct: 336 LLHGFYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLF 388

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T+I T + IL   +T      V  I+A++ +T     GK +  ++ +   +I++ Y  
Sbjct: 389 FGTSIPTTVIILKKNRTTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETYKK 441

Query: 459 RENGK 463
           RE+ +
Sbjct: 442 REDVE 446


>gi|237807983|ref|YP_002892423.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas
           auensis DSM 9187]
 gi|237500244|gb|ACQ92837.1| Site-specific DNA-methyltransferase (adenine-specific) [Tolumonas
           auensis DSM 9187]
          Length = 567

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/603 (17%), Positives = 197/603 (32%), Gaps = 104/603 (17%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57
           M E        L   +W  A+ L        +   +L    ++ +  A    +  ++   
Sbjct: 1   MNELEQQFLKDLEKKLWNAADKLRATLDAAQYKHAVLGLIFVKYVSDAFSIRQDEIKADL 60

Query: 58  ---KYLAFGGSNI-------------DLESFVKVAGYSFYNTSEYSLSTLGST------- 94
              ++  +   +                +         F+  +E     L          
Sbjct: 61  ANPEHEYYLDPDDFTPEELAEEIAIELEQRDYYTEKNVFWLPTESRWKFLQDNGPLVIGG 120

Query: 95  ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
                           +  +N    I   +   K +      +  I +      L ++  
Sbjct: 121 ADLVIDSKPKKITSVGHLIDNALEGIERDNPKLKGVLNKHYAALKIDQ----AKLNELIN 176

Query: 139 NFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             + I     +     ++ +IYE+ +  F     +    F TP  +V L   ++      
Sbjct: 177 LIATIPFTHKSLNSKDILGHIYEYFLGEFALAEGKKGGQFYTPASIVTLIVEMI------ 230

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETH 252
                      +YDP  G+GGF   +   +      + I        +  +GQE    T 
Sbjct: 231 -----EPFEGRVYDPAMGSGGFFVQSEKFIERYAGKNNIDPLTQKQKISIYGQEYNYTTW 285

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M IR L+ D  ++ +      ST + D     R  + ++NPPF  K        
Sbjct: 286 QLAAMNMAIRGLDYDFGKEPA------STYTNDQHPDLRADFIMANPPFNMKEW------ 333

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                +    R+  G P   + +  +L H+   L      G +A ++ + S         
Sbjct: 334 -DAGVDDNDPRWKYGKPPSGNANFAWLQHMLYHLAPN---GSQALLLANGSMSSTTNN-- 387

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKV 422
            E EIR+ L+ NDLIE +VALP  LF  T I   +W L+N K E           R+G+V
Sbjct: 388 -EGEIRKNLVTNDLIECMVALPGQLFTNTQIPACIWFLTNNKGERTDKAGRKLRNRKGEV 446

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KV 480
             I+A  L           R    D  +++ DI+ + + G+    + Y    G+ +   +
Sbjct: 447 LFIDARQLGYMKDRV---LRDFTMDDIQKVADIFHAWKMGEAVNGVAYEDQAGFCKSASL 503

Query: 481 LRPLRMSFILDKTGL--ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
               +  F+L       A +E D                + + + +Q       E+ +K+
Sbjct: 504 EEITKHDFVLTPGRYVGAAVEEDDGI-----PFTEKMATLTEKLSEQFAESAKLEAEIKQ 558

Query: 539 SIK 541
            + 
Sbjct: 559 KLV 561


>gi|170731320|ref|YP_001776753.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
 gi|167966113|gb|ACA13123.1| type I restriction-modification system DNA methylase [Xylella
           fastidiosa M12]
          Length = 527

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 127/564 (22%), Positives = 220/564 (39%), Gaps = 80/564 (14%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSA 54
           M+       A L   IW+ A DL G     DF   +L     R +   L        R  
Sbjct: 1   MSNNKEQERAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTSYINAQERRT 60

Query: 55  VREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNL----- 100
             EK    Y  F  +  +L     V    FY         + +      N    L     
Sbjct: 61  GTEKDDFDYAQFSDARAELGRVETVKEKGFYILPSELFVRVRAGAKFDDNLNETLSKVFA 120

Query: 101 ---ESYIASFSD-NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNF-----SGIELH 146
               S I S S+ + K +F+D D +S  ++L     ++   L K+         +  E  
Sbjct: 121 NIERSAIGSDSEQDIKGLFDDLDVNS--SKLGPTVAKRNEKLVKLLDAIGDLPLTSSEGG 178

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +  + YE+L++ + S   +   +F TP++V  L T + +     + K      
Sbjct: 179 FTENTIDLFGDAYEYLMQMYASTAGKSGGEFYTPQEVSQLLTQITVVGKTEVNK------ 232

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP CG+G  L    N V   G           +GQE+   T+ +C   M +  +  
Sbjct: 233 --VYDPACGSGSLLL---NFVKVLGHD---KVRQGFYGQEINLTTYNLCRINMFLHNVNY 284

Query: 267 DPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +       +I  G TL+       + F   +SNPP+  KW+ D +A+          RF 
Sbjct: 285 EKF-----HIAHGDTLTDPAHWDDEPFEAIVSNPPYSIKWDGDSNAL-----LINDPRFA 334

Query: 326 PG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           P   L   S   + F +H+ + L +     G AAIV     L+ G A   E +IR++L++
Sbjct: 335 PAGILAPKSKADLAFTLHILSWLAV----NGTAAIVEFPGVLYRGGA---EQKIRQYLID 387

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           N+ ++A++ LP DLFF T IAT + +L   K +        ++A+ L+      G K   
Sbjct: 388 NNYVDAVIQLPADLFFGTTIATCIIVLKKSKGDNAT---LFMDASSLFV---RSGTK-NK 440

Query: 444 INDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEA 500
           ++   +++ILD    R++ + F+R++D          +     ++    +    +  L +
Sbjct: 441 LSTAHQKKILDGLTVRQDIEHFARLVDNSDIAANGYNIAVSSYIAQADTRESIDIKALNS 500

Query: 501 DITWRKLSPLHQSFWLDILKPMMQ 524
           DI             +D +   ++
Sbjct: 501 DIARIVARQAELRKQIDAIVADLE 524


>gi|88854447|ref|ZP_01129114.1| type I restriction-modification system DNA methylase [marine
           actinobacterium PHSC20C1]
 gi|88816255|gb|EAR26110.1| type I restriction-modification system DNA methylase [marine
           actinobacterium PHSC20C1]
          Length = 522

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/557 (20%), Positives = 212/557 (38%), Gaps = 74/557 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAV 55
           T      A L   IW+ A DL G     DF   +L     R +   L         ++  
Sbjct: 4   TTKESQRAELHKTIWRIANDLRGSVDGWDFKSYVLGMLFYRFISENLTAYVNTGERKAGS 63

Query: 56  REK-YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIA-------- 105
            +  Y +   S+ +      V+   FY         +     ++ NL   +         
Sbjct: 64  ADFDYRSLSDSDAEFGRQETVSEKGFYILPSELFVNVQHKAQQDENLNETLHTVFRNIEG 123

Query: 106 -----SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154
                   D+ K +F D D +S   +L     ++   L K+      + L   D     +
Sbjct: 124 SAVGTDSEDDLKGLFHDLDVNS--PKLGQTVAKRNEKLVKLLDAIGDLPLGNFDDNTIDL 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L++ + S   +   ++ TP++V  L   + +     + K        +YDP  
Sbjct: 182 FGDAYEYLMQMYASSAGKSGGEYYTPQEVSELLARITVVGKTEVNK--------VYDPAV 233

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +       K       +GQE+   T+ +    M +  +  +       
Sbjct: 234 GSGSLLLKFAKVL------GKENVRQGFYGQEINLTTYNLARINMFLHDVNYEKF----- 282

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           N+  G TL+       + F   +SNPP+  KW+ D + +          RF P   L   
Sbjct: 283 NLAHGDTLTDPAHWGDEPFEAIVSNPPYSIKWDGDANPL-----LINDPRFAPAGVLAPK 337

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F MH+ + L +     G AAIV     L+ G A   E++IR++L++N+ ++A++
Sbjct: 338 SKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVDAVI 390

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP DLFF T IAT + +L   K +     V  I+A+  +    N G  +  + +  + +
Sbjct: 391 QLPPDLFFGTTIATCIIVLKKSKVDNS---VLFIDASAEF----NRGGSKNKLAEANQAK 443

Query: 452 ILDIYVSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKT--GLARLEADIT-WRKL 507
           ILD + +R +   F++++           +     +     +    +  L A+I      
Sbjct: 444 ILDTFTTRVDTAHFAKLVPNANLAENSYNMAVSSYVEQEDTREVVDITELNAEIARIVAR 503

Query: 508 SPLHQSFWLDILKPMMQ 524
               ++   +I+  +  
Sbjct: 504 QAELRTAIDEIVADLEG 520


>gi|238917453|ref|YP_002930970.1| type I restriction enzyme M protein [Eubacterium eligens ATCC
           27750]
 gi|238872813|gb|ACR72523.1| type I restriction enzyme M protein [Eubacterium eligens ATCC
           27750]
          Length = 892

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/491 (21%), Positives = 196/491 (39%), Gaps = 70/491 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L   +W + + L G    +++   IL    ++ +    +  + A  +  +   
Sbjct: 1   MAVKKTQLYASLWASCDKLRGGMDSSEYKDYILTLLFMKYVTDKFK-NKGAYEDIKVFDK 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSD---NAKAIFEDFD 119
             + D +   K  G SF          L    N    ++  IA  +D   + K + +   
Sbjct: 60  AHDKDPDP-EKRTGCSF-----DDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAH 113

Query: 120 FSSTIARLEKA----GLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           F+    +L         L  +   F   EL         D ++ + YE+L+R+F +E  +
Sbjct: 114 FNDE-KKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGK 172

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP +V  +   ++                T+ DP CG+G  L  A++       
Sbjct: 173 SKGQFYTPAEVSRILANVV------GISHCTDASATVCDPACGSGSLLIRAIDA------ 220

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
               P  ++ +GQE E  T  +     ++        R     I+ G+T S   +     
Sbjct: 221 ---APFPIMGYGQEKESTTAGLAKMNAVLH-------RKAEIIIKSGNTFSNPQYMDKSD 270

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLA 343
               +RF Y ++NPPF  K  +D  A        E GRF G G +P   +G   +LMH+ 
Sbjct: 271 NSVLERFDYIVANPPFSMKNWRDGIA------GKEYGRFEGYGDMPPEKNGDYAWLMHIL 324

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G+AA++L    LF G A   E+ IR  +++   I+ I++LP +LF+ T I
Sbjct: 325 KTLKS----NGKAAVILPHGVLFRGNA---EATIRETIIKKHWIKGIISLPANLFYGTGI 377

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461
           A  + ++       R+G + +I+A+  +     +G K R + +    +I+  +  +   +
Sbjct: 378 AACVLVIDKEGAANRQG-IFMIDASRGYV---KDGNKNR-LRERDIYRIITTFNEQITTD 432

Query: 462 GKFSRMLDYRT 472
            K++R +    
Sbjct: 433 PKYARFVPNDE 443


>gi|188527305|ref|YP_001909992.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188143545|gb|ACD47962.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 529

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 124/580 (21%), Positives = 211/580 (36%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49  --EPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             E  +            E+  +     I+ + F       F N  + +        T  
Sbjct: 61  NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMAMYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCHINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  + + +          RF P 
Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWAGNSNPI-----LINDERFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L       G  AIV     L+ G A   E++IR  L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTCAIVEFPGVLYRGNA---EAKIREHLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 EHNREKILQTYTERKTIKHFSALAN---------MEKIKENDYNLSVNRFVEQEDTKEII 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L+     +I + + +Q       ES +KE  +   A
Sbjct: 494 DIKALN----GEISQIVEKQSALRNSLESIIKELEEGQNA 529


>gi|229542843|ref|ZP_04431903.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
 gi|229327263|gb|EEN92938.1| type I restriction-modification system, M subunit [Bacillus
           coagulans 36D1]
          Length = 854

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/567 (20%), Positives = 209/567 (36%), Gaps = 88/567 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS-----------AV 55
           ++  +   +W  A +L G    + +   +L     + L      T              +
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETFKVASGIGQMSELEL 62

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASF--- 107
            E Y        ++   +      +Y + EY   T        + E       +  F   
Sbjct: 63  VEAYTKAKAEYGEMLEQMIQNVLGYYVSPEYLYQTWIKDINSGDFEVQKVIDSLNHFERT 122

Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                 SD+ + +F       T   L     E++  +  +   F+ + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTLDLTDTALGSNLNERSKNIKALILLFADLNMV-ALQKGDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   ++              I+++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIVA---------RTSDIKSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+            L  +GQE    T+ +    +L+  +  +        I
Sbjct: 233 GSLLLTVGKHL-----DEDAQKNLSYYGQEKNTATYNLTRMNLLLHGVRPEKMT-----I 282

Query: 277 QQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
           + G TLS+D            +F   + NPP+  K         +        RF     
Sbjct: 283 KNGDTLSQDWPEDPERPNEGVQFDAVVMNPPYSAKN------WNRSGLKVSDPRFEVAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S G   FL+H    L       G  AIVL    LF G   S E EIR+ LL+ + I
Sbjct: 337 LPPDSKGDFAFLLHGLFHL----GQNGTMAIVLPHGVLFRG---SAEGEIRKRLLQKNYI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +AI+ LP++LF  T I   + IL  +K  +    V +I+A+  +  +     K+ ++ + 
Sbjct: 390 DAIIGLPSNLFTNTGIPVVVIIL--KKNRKFDDPVLIIDASHSFIKV----GKQNVLQEK 443

Query: 448 QRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL-----ARLEAD 501
              +I+D YV R   + +S +            +  P  +    ++  +     A L   
Sbjct: 444 DIAKIVDTYVERREEEGYSHLATREEIMENEYNMNIPRYI--QANEEEIPHDVDAHLLGG 501

Query: 502 ITWRKLSPLH--QSFWLDILKPMMQQI 526
           I  + +  L   QS   D+LK  +++I
Sbjct: 502 IPQKNIDDLKVLQSTVPDVLKRSLKEI 528


>gi|190890487|ref|YP_001977029.1| type I restriction-modification system protein, methyltransferase
           subunit [Rhizobium etli CIAT 652]
 gi|190695766|gb|ACE89851.1| probable type I restriction-modification system protein,
           methyltransferase subunit [Rhizobium etli CIAT 652]
          Length = 830

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/484 (21%), Positives = 190/484 (39%), Gaps = 76/484 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + +   +W + + L G    + +   IL    ++ +                   
Sbjct: 19  MAIKKSDIYRSLWDSCDQLRGGMDASLYKDYILTLLFVKYVSDR---------------- 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFSD--NAKAIFED--F 118
            +           G SF       L  L GS +    ++  IA  ++  + K + +   F
Sbjct: 63  -AAQADALIEVPKGCSF-----DDLRKLRGSKDIGEGIDKAIAGIAEANDLKNVIDRAFF 116

Query: 119 DFSSTIARLEK-AGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174
           + +    R EK    L  +   FS  EL+        D ++ + YE+L+R F +E  +  
Sbjct: 117 NDAEKFGRGEKMVKTLTALINIFSREELNFSRNRADGDDILGDAYEYLMRNFATESGKSK 176

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V  +  A+      A    +    +T+YDPTCG+G  L  A +         
Sbjct: 177 GQFYTPAEVSRVVAAV------AGINRANSPRQTVYDPTCGSGSLLLKAADA-------- 222

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
                L  +GQE +  T  +    M++   E          I QG  ++   F       
Sbjct: 223 -ASVELTIYGQEFDITTRGLAKMNMIMHGRE-------DAEIAQGDVIADPQFRASETAI 274

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F + ++NPPF  K                 GRF  G+P   +G   FL+H+   ++  
Sbjct: 275 QTFDFVVANPPFSTKAWSSGLTANNRF-----GRFDIGMPPEKNGDFAFLLHILASMKAT 329

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +G    A++L    LF G     E+E+R  +L+   ++AI+ LP +LF+ T I   + +
Sbjct: 330 GSG----AVILPHGVLFRGNK---EAELREKILKRGYVKAIIGLPANLFYGTGIPATIIV 382

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468
           L      +RR  V +I+A+  +     +G K R + +    +I+D+Y  +   K +S ++
Sbjct: 383 LDKSGACDRR-PVFMIDASRGFI---KDGNKNR-LRERDIHKIIDVYARQVEIKGYSSLV 437

Query: 469 DYRT 472
            Y  
Sbjct: 438 SYDD 441


>gi|63146889|emb|CAI79472.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 532

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 191/486 (39%), Gaps = 72/486 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50
           M E   + + L + ++  A+ L       ++   +L     + L       L        
Sbjct: 1   MAEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 51  -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFS 108
            T    ++ Y         L+      GY       Y+   L + N  +  L     +F+
Sbjct: 60  VTLDEAQKIYEENLEEEGLLDEVKDELGYLIEPEYTYT-KILDNANDGSFQLNQLGDAFN 118

Query: 109 D------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSN 157
                  + + +F+D+D  S   RL +        +  + K    +EL     P   + +
Sbjct: 119 KLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVIKAIGKLELV--KTPGDTLGD 174

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F SE  + A +F TP++V  L   L L   D           ++YDP  G+G
Sbjct: 175 AYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSG 228

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +   +V +          +  +GQE+   T  +    M++  ++       ++ ++
Sbjct: 229 SLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKLR 276

Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333
            G TL +D    +   F   + NPP+  KW  DK  ++         RF   G LP  S 
Sbjct: 277 NGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKSK 329

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ L
Sbjct: 330 ADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGL 382

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T I T + +L   K +     V  I+A+  +  ++     +  +  +   +IL
Sbjct: 383 PANLFYSTGIPTTIVVLKKDKQDR---NVLFIDASKEFEKVKT----QNKLRQEDIDKIL 435

Query: 454 DIYVSR 459
             Y  R
Sbjct: 436 KTYEER 441


>gi|256826762|ref|YP_003150721.1| type I restriction system adenine methylase HsdM [Cryptobacterium
           curtum DSM 15641]
 gi|256582905|gb|ACU94039.1| type I restriction system adenine methylase HsdM [Cryptobacterium
           curtum DSM 15641]
          Length = 856

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/517 (19%), Positives = 192/517 (37%), Gaps = 64/517 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65
           +   LA+ IW++A  +    + + +   IL F   + L    +   ++    +      +
Sbjct: 2   NKQQLASKIWESANKMRSTIEASQYKDYILGFIFYKFLSETEVARLKAKDFAESDLPTLT 61

Query: 66  NIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRNNLESYIASFSDNAKAIFED 117
             D E+   V G   Y  +   L              + R+ L ++  + S   K +FE 
Sbjct: 62  EDDPETVAFVRGECGYFIAYDDLFQTWIAKGKDFEIADVRDALSAFDRNVSPAHKKVFEK 121

Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L      ++     + +    I          V+  IYE+L+ +F +  
Sbjct: 122 IFETLQTGLSKLGTDARSQSKAARDLIQLIKDI-PMDGRQDYDVLGYIYEYLLEKFATNA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++     +  +        +YDPT G+G  L +    VA  
Sbjct: 181 GKKAGEFYTPHEVSQLISEIVAWHLQSRRQIE------IYDPTSGSGSLLINIGKAVARR 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +   P  +  + QEL+  T+ +    +++R +  D        ++ G TL+ D     
Sbjct: 235 NGN---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIA-----VRNGDTLADDWPWFD 286

Query: 291 R------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                            +SNPP+ + W+     +          RF  G+   S     F
Sbjct: 287 TVENKDETYKPLFVDAVVSNPPYSQDWDPVDKEI--------DPRFEYGVAPKSKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L       G   IVL    LF G     E  IRR L+E+  I+AI+ LP ++F
Sbjct: 339 LLHDLYHLRND----GIMCIVLPHGVLFRGGE---EGLIRRNLVEHRHIQAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L  ++       V +++A+  +        K   +     ++I+D   +
Sbjct: 392 FGTGIPTIIMVLRKQRAA-GDDNVLVVDASKYFMKE----GKNNKLRASDIKRIVDAVTT 446

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
             +   FSR +           +  P  +       G
Sbjct: 447 NTDVDSFSRSVTIDEIRKNDYNLNIPRYVDSSEAPEG 483


>gi|240949222|ref|ZP_04753566.1| type I restriction-modification system [Actinobacillus minor NM305]
 gi|240296338|gb|EER46982.1| type I restriction-modification system [Actinobacillus minor NM305]
          Length = 840

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 179/481 (37%), Gaps = 71/481 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  +W +A DL G    +++   IL F   + L       +     +        
Sbjct: 2   NKQQLAATLWASANDLRGKMDASEYKNYILGFLFYKFLS----EHQENYLVQNE-VSFEE 56

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSDNAKAIFEDFDF 120
           +D +S   +     Y  ++  L      N   N      +   I  F++N     +  DF
Sbjct: 57  LDSDSIETIKEDLGYFIAQEDLYRTWIVNISENKWKLSHVTDAINHFNENLYDS-QKDDF 115

Query: 121 SSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
               + L            +K   + K+ +  +GI++  D     V   IYE+LI +F  
Sbjct: 116 EGVFSDLNLTSEKLGKNLSDKESAVKKLIELLNGIKIT-DNSEYDVFGYIYEYLIAQFAM 174

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP  V  +   ++ D               +YDPT G+G  L      V 
Sbjct: 175 ASGKKAGEFYTPHQVSRIMAEIVADEL------RQKEQCAVYDPTAGSGSLLLTVSEAVN 228

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +    +   GQE    T+ +    +L+R ++          ++   TL  D   
Sbjct: 229 RN----EHRDNIQFFGQEENNTTYNIARMNLLMRGVKPANMI-----LRNADTLKSDWPY 279

Query: 289 GKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFL 339
           G+             ++NPP+  KW+ ++          +  RF   G    +     FL
Sbjct: 280 GEINGEDTPLFVDCVVANPPYSAKWDTERA--------DKDVRFKEYGTAPATKADYAFL 331

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G     E +IR  LL+   I+AI+ LP  +F 
Sbjct: 332 LHSLYHLKSD----GIMAIVLPHGVLFRGNE---EEKIRTKLLQRRQIDAIIGLPAGIFT 384

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + IL     + +   V  I+A+  +   +N      ++ +   ++ILD+Y  R
Sbjct: 385 NTGIPTIVMILRK---QPKHNNVLFIDASQGFRKEKNS----NVLRERDIKKILDVYRKR 437

Query: 460 E 460
           E
Sbjct: 438 E 438


>gi|186701606|ref|ZP_02971313.1| type I restriction-modification system, M subunit family
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|186700836|gb|EDU19118.1| type I restriction-modification system, M subunit family
           [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 510

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/560 (19%), Positives = 219/560 (39%), Gaps = 64/560 (11%)

Query: 1   MTEFTGSA---ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M     +      +AN +W + ++L G+     +  +I+    L+ +        +A++E
Sbjct: 1   MENNKQTKINIDDIANDLWASCDELRGNISSEQYMHIIIGIIFLKTISDKYNYAINALKE 60

Query: 58  KYLAFGGSNIDLESFVK---------VAGYSFYN-TSEYSLSTLGSTNTRNNLESYIASF 107
           KY      +I  +S +          V   + +N  S ++  +             I + 
Sbjct: 61  KYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNYISGFTTDSSIGEKIDQAFLK-IENQ 119

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +   K +F     S  + +      L  + + F+  +       + ++  IYE+ +  F 
Sbjct: 120 NPRLKGLFNKQYNSPELDK----TRLGNVVRKFNDYDF--SQFNEDLVGRIYEYFLGEFF 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +   +F TP+ VV L   +L           P     +YDP CGTGG    A N++
Sbjct: 174 RKQGQKGGEFYTPKTVVELLIDIL----------DPNDNIKMYDPACGTGGMFVQARNYL 223

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +    +        +GQE + +T  +    +L+     +       +     T  +DL 
Sbjct: 224 HEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLNGFNENDIHLGRGS---EDTFKEDLH 277

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            G++F   ++NPPF  K    ++ +  E       RF  G+P  ++ +  +L+H+ +KL 
Sbjct: 278 KGQKFDIIVANPPFNLKKWYREELLNDE-------RFSWGMPPENNANYAWLLHIISKLN 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+A ++L++  L +      ES +R+ ++E ++++AI++LP  LF+ T I+  +
Sbjct: 331 SR----GKAGVILANGSLSSSNKE--ESLLRKKMIEENIVDAIISLPDKLFYTTQISASI 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W  +  K  E    V  I A+ +         K R +  D   +I ++Y   E G+    
Sbjct: 385 WFFNKNKENE---NVLFIEASKMGELKTK---KLRFLTKDDILKIKNVYDQHEQGE---- 434

Query: 468 LDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            D    G+ +   +   +   + L        E ++   +          + L  +  ++
Sbjct: 435 -DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQEVIDHEQLNHEIKELKEELSVLFDEL 493

Query: 527 YPYGWAESFVKESIKSNEAK 546
                     KESIK    K
Sbjct: 494 EDLIPQ---AKESIKKVLEK 510


>gi|307243983|ref|ZP_07526104.1| putative type I restriction-modification system, M subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492633|gb|EFM64665.1| putative type I restriction-modification system, M subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 521

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/568 (18%), Positives = 212/568 (37%), Gaps = 70/568 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +      S+   +WK+A+ L G  +  ++  V+L    L+      E  R  + E + 
Sbjct: 1   MAKKIKKEISMEEALWKSADKLRGSVEPAEYKHVVLSLFFLKFASYKFEECRRNIIENHG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKA 113
                              FY   E   S +     ++++          I   +   K 
Sbjct: 61  EKYADMKP----FYTKENVFYLPEESRWSYIIENAKQDDIALKIDTALFTIEKNNPLLKG 116

Query: 114 IFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                   +  +RL      L  +    + I    +   + ++  +YE+ + +F     +
Sbjct: 117 ALP----DNYYSRLHIDTSKLASLLDEINRINT--NDKENDIIGRVYEYFLSKFALAEGK 170

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G  +F TP+ +V+L   +L   D             LYDP CG+GG    ++  V     
Sbjct: 171 GKGEFYTPKCIVNLIAEMLEPYDG-----------ILYDPCCGSGGMFVQSVKFVEAHSG 219

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           + K    +  +GQE    T  +    + IR + ++     +      +T + D     + 
Sbjct: 220 NKKK---VSIYGQEYTNTTFKLAKMNLAIRGISANLGEMAA------NTFTNDQHKDLKA 270

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
            + ++NPPF       +      ++  +  R+ G  +P  S+ +  +++++ +KL    +
Sbjct: 271 DFIMANPPFN------QKEWRTANELIDDPRWNGYEVPPTSNANYGWILNIVSKL----S 320

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  +L++  L +      E +IRR L+EN+L+EAIV LP +LF+ T+I+  LWIL+
Sbjct: 321 QNGVAGFLLANGALSDDGT---ELKIRRQLIENNLVEAIVILPRNLFYTTDISVTLWILN 377

Query: 412 NRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             K +              R  ++  ++   + +       K   + D+ R ++ ++Y +
Sbjct: 378 KNKKDRVVEQNGQIKRYRNREKEILFMDLRQMGSPYEK---KYIELTDEDRAKVTEVYHN 434

Query: 459 RENGKFSRMLDY-RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            +   F +  +    F Y  +         F L  +                  +S   +
Sbjct: 435 WQQENFEKTYENVPEFCYSAL-FDEVKEKGFTLVPSRYIEFINRDENIDFDTKMKSLQSE 493

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545
           + + ++ +        S  KE     E 
Sbjct: 494 LKELLIDEEKSKEDLLSVFKELGYEIEL 521


>gi|254718011|ref|ZP_05179822.1| Type I site-specific deoxyribonuclease HsdM [Brucella sp. 83/13]
 gi|265982954|ref|ZP_06095689.1| type I restriction-modification system methyltransferase subunit
           [Brucella sp. 83/13]
 gi|306839791|ref|ZP_07472592.1| type I restriction-modification system, M subunit [Brucella sp. NF
           2653]
 gi|264661546|gb|EEZ31807.1| type I restriction-modification system methyltransferase subunit
           [Brucella sp. 83/13]
 gi|306405146|gb|EFM61424.1| type I restriction-modification system, M subunit [Brucella sp. NF
           2653]
          Length = 518

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 125/546 (22%), Positives = 206/546 (37%), Gaps = 76/546 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52
           MT  T   A+L   IW+ A D+ G     DF + +L     R +            E  +
Sbjct: 1   MT-STQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGVLFYRFISENFASYIEGGDESIK 59

Query: 53  SAVREK---YLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNLESYI 104
            A               I  + +       F N      S   L+T  +T     +ES  
Sbjct: 60  YAALADSVVTAEIKDDAIKTKGYFIYPSQLFANVAAKARSNEKLNTELAT-IFAAIESSA 118

Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
             +  +   I   F DF +T  RL     +K   L  + K  +G++  H D     +  +
Sbjct: 119 NGY-PSEHDIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLDFGHFDAAHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHKQTSVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQE+   T+ +    M +  +  D       NIQ
Sbjct: 230 SLLLQAKKHFDAHVIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQ 278

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL +  F + K F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 279 LGNTLLEPHFGSDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 334 DFAFVLHALSYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +L+  KT+      Q I+A+ L+    N      ++ D    QI+ 
Sbjct: 387 PNLFYGTTIAVNILVLAKNKTDTLT---QFIDASGLFKKETN----NNVLLDSHIEQIMQ 439

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            + S+ +              R + + R     + L  +     +       ++ L+   
Sbjct: 440 AFDSKNDVDHFA---------RSVPLERIAGNDYNLSVSSYVEAKDTREAVDIAALNAKL 490

Query: 515 WLDILK 520
              + +
Sbjct: 491 KTTVAR 496


>gi|262067382|ref|ZP_06026994.1| type I restriction-modification system, M subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378945|gb|EFE86463.1| type I restriction-modification system, M subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 520

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/562 (21%), Positives = 215/562 (38%), Gaps = 84/562 (14%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57
           M          L   IW  A DL G     DF + +L     R +   L     +  V  
Sbjct: 1   MDNKKEQERTELHRTIWAIANDLRGSVDGWDFKQYVLGILFYRYISENLTNYINKGEVEA 60

Query: 58  KYLAFGGSNI-DLESFVKVAGYS-----FYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
               F  +++ D ++ V           F   SE  ++     +   NL   + +   N 
Sbjct: 61  GNPDFNYADLSDEDAIVAKEDLIATKGFFILPSELFVNVRKRADKDENLNVTLDTIFKNI 120

Query: 112 -------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152
                        K +F+D D +S   +L     ++   L  +      ++L        
Sbjct: 121 ENSANGTESENDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP
Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +       K        GQE+   T+ +C   M +  ++ D     
Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L 
Sbjct: 282 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDASQI-----LINDSRFSPAGVLA 334

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ 
Sbjct: 335 PKSKADLAFIMHSLSWLAP----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+IAT + ++   KT+    KV  I+A+  +  + N       + +   
Sbjct: 388 IIQLPDNLFYGTSIATCIMVMKKAKTD---NKVLFIDASKEFVKVTNS----NKMTEKHI 440

Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADI 502
             I++ +  RE+ ++ S ++D     Y +I V     +S             +  +E + 
Sbjct: 441 NDIVEKFTKRESLEYISNLVD-----YEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNK 494

Query: 503 TWRKLSPLHQSFWLDILKPMMQ 524
             +++    +    +I K + +
Sbjct: 495 EIQRIVAREEELRKEIDKIIAE 516


>gi|225023393|ref|ZP_03712585.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC
           23834]
 gi|224943871|gb|EEG25080.1| hypothetical protein EIKCOROL_00251 [Eikenella corrodens ATCC
           23834]
          Length = 513

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 191/490 (38%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54
           MT  T   A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 1   MT-ATQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 59

Query: 55  VREKYLAFGGSNIDLESFVKV-----AGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108
                 +     I  ++             F N  +E   +   +T  +    +  +S S
Sbjct: 60  YAAMSDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFTAIESSAS 119

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSN 157
                 + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  +
Sbjct: 120 GYPSEQDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP++V  L   L +   + + K        +YDP CG+G
Sbjct: 178 AYEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 230 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYN-----QFHIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+K      + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 279 LGDTLTKPKLKDSKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 334 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K       +Q I+A+  +    N      ++ ++   +I+ 
Sbjct: 387 PNLFYGTSIAVNILVLSKHK---DNTDIQFIDASGFFKKETN----NNVLTEEHIAEIVK 439

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 440 LFADKADVPH 449


>gi|254303926|ref|ZP_04971284.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324118|gb|EDK89368.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 520

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 119/561 (21%), Positives = 207/561 (36%), Gaps = 82/561 (14%)

Query: 1   MTEFTGSA-ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57
           M        A L   IW  A  L G     DF + +L     R +   L     R     
Sbjct: 1   MDNKKEQERAELHRTIWGIANALRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEFEA 60

Query: 58  KYLAFGGSNIDLESFVKVA------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           +   F  S ++ E  +            F   SE  ++     +   NL   + +   N 
Sbjct: 61  ENTDFDYSLLNDEDAIVAKEDLIRTKGFFILPSELFVNVRKKADKDENLNVTLDTIFKNI 120

Query: 112 -------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152
                        K +F+D D +S   +L     ++   L  +      ++L        
Sbjct: 121 ENSASGTESESDLKGLFDDIDVNS--NKLGGTVAKRNENLVNLLNGVGDMKLGDYQENTI 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T L L     + K        +YDP
Sbjct: 179 DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKLTLVGKTEVNK--------VYDP 230

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +       K        GQE+   T+ +C   M +  ++ D     
Sbjct: 231 ACGSGSLLLKFAKIL------GKDNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 281

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL +      + F   +SNPP+  KWE D   +          RF P   L 
Sbjct: 282 --DIAHGDTLIEPAHWDDEPFEAIVSNPPYSIKWEGDSSQI-----LINDSRFSPAGVLA 334

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ 
Sbjct: 335 PKSKADLAFIMHSLSWLAS----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDC 387

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+IAT + +L   K      KV  I+A+  +  + N       + +   
Sbjct: 388 IIQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKHI 440

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADIT 503
             I++ +  RE+ ++   L      Y +I V     +S             +  +E +  
Sbjct: 441 DDIVEKFTKREDIEYISNL----VEYEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNKE 495

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
            +++    +    +I K + +
Sbjct: 496 IQRIVTREEELRKEIDKIIAE 516


>gi|68248821|ref|YP_247933.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|148825522|ref|YP_001290275.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE]
 gi|229847391|ref|ZP_04467492.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae
           7P49H1]
 gi|68057020|gb|AAX87273.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 86-028NP]
 gi|148715682|gb|ABQ97892.1| hypothetical protein CGSHiEE_02150 [Haemophilus influenzae PittEE]
 gi|229809717|gb|EEP45442.1| hypothetical protein CGSHi7P49H1_00835 [Haemophilus influenzae
           7P49H1]
          Length = 514

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 185/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  NN             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    +            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDNPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  
Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFYGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           + ++E+   
Sbjct: 442 FANKEDVPH 450


>gi|63146883|emb|CAI79466.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 532

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/486 (23%), Positives = 191/486 (39%), Gaps = 72/486 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50
           M E   + + L + ++  A+ L       ++   +L     + L       L        
Sbjct: 1   MAEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 51  -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFS 108
            T    ++ Y         LE      GY       Y+   L + N  +  L     +F+
Sbjct: 60  VTLDKAQKIYEENLEEEDLLEEVKDELGYLIEPEYTYT-KILDNANDGSFQLNQLGDAFN 118

Query: 109 D------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSN 157
                  + + +F+D+D  S   RL +        +  + K    +EL     P   + +
Sbjct: 119 KLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVIKAIGKLELV--KTPGDTLGD 174

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F SE  + A +F TP++V  L   L L   D           ++YDP  G+G
Sbjct: 175 AYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSG 228

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +   +V +          +  +GQE+   T  +    M++  ++       ++ ++
Sbjct: 229 SLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKLR 276

Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333
            G TL +D    +   F   + NPP+  KW  DK  ++         RF   G LP  S 
Sbjct: 277 NGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKSK 329

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ L
Sbjct: 330 ADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGL 382

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T I T + +L   K +     V  I+A+  +  ++     +  +  +   +IL
Sbjct: 383 PANLFYSTGIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKIL 435

Query: 454 DIYVSR 459
             Y  R
Sbjct: 436 KTYEER 441


>gi|126175909|ref|YP_001052058.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125999114|gb|ABN63189.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 547

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 116/575 (20%), Positives = 202/575 (35%), Gaps = 85/575 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           MT+       L   +W  A+ L G     DF   +L F  LR L    E           
Sbjct: 1   MTQ--EQLNDLGKILWDIADSLRGAMNADDFRDYMLSFLFLRYLSDNYEKAAQKELGRDY 58

Query: 50  -----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--- 101
                  ++A    +      +I            +     +  +++       N E   
Sbjct: 59  PILAKDDKTAPLALWYTEYREDIAEFEKQMRRKLHYVIEPRHLWTSIAELARTQNSELLQ 118

Query: 102 ------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
                  YI   SF  + K +F + + +S   +L     ++   L  I +  S   +   
Sbjct: 119 TLEAGFKYIEEQSFDSSFKGLFSEINLNS--EKLGKSPTDRNKKLCTIIQKISE-GIAEF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +    ++ + YE+LI  F +   + A +F TP+ +  + + ++              +  
Sbjct: 176 STDSDILGDAYEYLIGEFAAGSGKKAGEFYTPQPISTILSEIVTLDSQEPKTGKKKKLDK 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +   H+ D G           +GQE    T  +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRKHIVDAGGTVGK-----IYGQEKNITTFNLARMNMLLHGVK--- 287

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL  D             +    ++NPPF  +W+  +         GE
Sbjct: 288 --DTEFEIHHGDTLLNDWDILSEMNPAKKLKCDAVVANPPFSYRWDPSEAQ-------GE 338

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L       G  AI+L    LF G A   E  IR+
Sbjct: 339 DFRFKSHGLAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EQRIRK 391

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL +  I+ ++ LP +LFF T I   + +L   K       +  INA++ +   + + K
Sbjct: 392 KLLNDGHIDTVIGLPANLFFSTGIPVCIIVLKKCKKY---DDILFINASEHYEKGKRQNK 448

Query: 440 KRRIINDD--QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
            R    D+    ++I++ Y  R   +            RR+ +    +  F L+ +    
Sbjct: 449 LREGKGDEPNDIKKIVETYQYRSEDER---------YSRRVSMAEIEKNDFNLNISRYVS 499

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              D     L+   Q   +DI   +   +  +   
Sbjct: 500 TAKDTVKIDLAK-EQRKLVDIESSITSALIEHNKF 533


>gi|126465661|ref|YP_001040770.1| N-6 DNA methylase [Staphylothermus marinus F1]
 gi|126014484|gb|ABN69862.1| N-6 DNA methylase [Staphylothermus marinus F1]
          Length = 572

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/515 (17%), Positives = 188/515 (36%), Gaps = 46/515 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGS 65
           +   L + + K A+ +     ++     IL     +++    +   +   +E       S
Sbjct: 76  TRGDLESILKKAADLIRTRVDYS----FILVLLFYKKISDQWKLEFQRTYKELVEQGYAS 131

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESY---IASFSDNAKAIFEDFDF 120
               E       + F    EY    +                 I   ++  + IF++FDF
Sbjct: 132 EEAKELARGKYFHQFQIPEEYLWDNIVKHKGELHEYFSKALKKIGELNEELRPIFDNFDF 191

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               +  E + +L ++ + F  + L        ++ + YE L+  F    ++   +  TP
Sbjct: 192 HIFASNRENSEILRQLVELFDSVPLI--DTSPDILGDAYEWLLMMFAPTKAKE-GEVFTP 248

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R+V+ L   +L           P     + DP  G+GG L  +  ++ +     +    L
Sbjct: 249 REVIRLLVEIL----------DPKPGYKILDPAAGSGGMLIISYKYIEEKHGREEA-DKL 297

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE   +T A+    M I  +        ++ I+ G +L    F    +   L+NPP
Sbjct: 298 YLFGQEANAKTAALAKMNMYIHGI-------ANQKIEVGDSLLYPKFELGEWDIVLANPP 350

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           + +    ++   + E           G          ++  +    +      G+  +V+
Sbjct: 351 WNQDGYNEQVLKKNEKYRLIY---KYGYTPSQTADWAWIQLMLAAAKPQ----GKVGVVI 403

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
            +  LF G     E  IR  ++E DL+E ++ LP  LF+ T     + I +  K +ERR 
Sbjct: 404 DNGALFRGGR---EKSIRSKIIEEDLVETVILLPEKLFYNTGAPGAIIIFNKNKPQERRN 460

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIK 479
           K+  INA++ +    N  ++   ++     +I   Y   +    FSR++           
Sbjct: 461 KILFINASNEYEKHPNI-RRLNRLSKQNIEKIAKTYYEYKEIPGFSRIVGLSEIRENNYN 519

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +   L   ++     +  ++ +   ++L  + +  
Sbjct: 520 LNVTL---YVTPPIEIEEIDLEKELQELIEIEKQA 551


>gi|325924159|ref|ZP_08185721.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
 gi|325545355|gb|EGD16647.1| type I restriction system adenine methylase HsdM [Xanthomonas
           gardneri ATCC 19865]
          Length = 519

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 190/486 (39%), Gaps = 65/486 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREK 58
               A+L N IWK A D+ G     DF + +L     R +                    
Sbjct: 4   AQQRAALQNQIWKIANDVRGAVDGWDFKQYVLGTLFYRFISENFIAYITGGDASVDYAAM 63

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEY--------SLSTLGST--NTRNNLESYIASFS 108
                      +  +K  GY  Y +  +        +   L +   N    +E+  + +S
Sbjct: 64  ADDDESIEAAKDDAIKTKGYFIYPSQLFVNVAAKANTNERLNTDLANIFKAIEASASGYS 123

Query: 109 DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEH 161
              + I   F DF +T  RL     +K   L  + K  + ++          +  + YE 
Sbjct: 124 SE-QDIKGLFADFDTTSNRLGNTVKDKNTRLAAVLKGVAALDFGGFYASHIDLFGDAYEF 182

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G  L 
Sbjct: 183 LISNYAANAGKSGGEFFTPQQVSKLIAQLAMHGQTSINK--------IYDPACGSGSLLL 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I  G+T
Sbjct: 235 QAKKQFEDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----HIHLGNT 283

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L +  F   + F   +SNPP+  KW   +D            RF P   L   S     F
Sbjct: 284 LIEPHFGDDKPFDAIVSNPPYSVKWIGSEDPT-----LINDDRFAPAGVLAPKSKADFAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L       GRAAIV      + G A   E +IR++L++N+ +E++++L  +LF
Sbjct: 339 VLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVESVISLAPNLF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T IA  + +LS  KT+      Q I+A+ L      +G    ++ D+  ++I+ ++ S
Sbjct: 392 YGTTIAVNILVLSKHKTDTAT---QFIDASGLL----KKGTNNNLLLDEHIKEIMAVFGS 444

Query: 459 RENGKF 464
           + N + 
Sbjct: 445 KANVEH 450


>gi|24379344|ref|NP_721299.1| type I restriction-modification system DNA methylase [Streptococcus
           mutans UA159]
 gi|24377269|gb|AAN58605.1|AE014930_7 type I restriction-modification system DNA methylase [Streptococcus
           mutans UA159]
          Length = 534

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/501 (22%), Positives = 196/501 (39%), Gaps = 74/501 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
            + +     L   IW  A+++ G     DF + IL     R +   +             
Sbjct: 4   NKESQQRQELHQKIWAIADNVRGAVDGWDFKQYILGILFYRFISENMSDYFDRAEHEAGD 63

Query: 57  -----------EKYLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNL 100
                      E    F    ++ + F  +    F N      +  +L+T  +   +   
Sbjct: 64  PDFRYADLSDEEAEEDFKPDTVEEKGFFILPSQLFENIVKTASTNENLNTDLAKIFKKIE 123

Query: 101 ESYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDR 153
           ES I   S++  K +F+D D  +T  RL     EK   L  I    +G++    +     
Sbjct: 124 ESAIGKDSEHAIKGLFDDVD--TTSNRLGGSVKEKNKRLSDILTGIAGLDFGTFEENDID 181

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+LI  + S   +   +F TP+ V  L   L++   + + K        +YDPT
Sbjct: 182 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLAQLVMVGKEHINK--------VYDPT 233

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L                       GQE+    + +    M +  +  +     +
Sbjct: 234 CGSGSLLLQMKKQFETHILEEG------FFGQEINMTNYNLARMNMFLHNINYN-----N 282

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G TL       +R F   +SNPP+  KW  D D            RF P   L  
Sbjct: 283 FDIRRGDTLLNPQHLYERPFDAIVSNPPYSIKWIGDADPT-----LINDERFAPAGKLAP 337

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F+MH  + L       GRAAIV      + G A   E  IR++L++N+ +EA+
Sbjct: 338 KSKADFAFIMHSLSHLSNK----GRAAIVCFPGIFYRGGA---EKTIRQYLIDNNFVEAV 390

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI------- 443
           +ALP +LF+ T+IATY+ +L+  K E    K   I+A+    S  +   K          
Sbjct: 391 IALPDNLFYGTSIATYILVLAKNKPE---DKTLFIDASSDEKSTVSGKNKFYETVTNGKI 447

Query: 444 INDDQRRQILDIYVSRENGKF 464
           +N      I++++ ++++  +
Sbjct: 448 LNPKNIEAIVELFKNKKDVDY 468


>gi|167761133|ref|ZP_02433260.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
 gi|167661252|gb|EDS05382.1| hypothetical protein CLOSCI_03531 [Clostridium scindens ATCC 35704]
          Length = 890

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 194/491 (39%), Gaps = 72/491 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L   +W + + L G    +++   IL    ++ +    +  + A  +  +   
Sbjct: 1   MAVKKTQLYASLWASCDKLRGGMDSSEYKDYILTLLFMKYVTDKFK-NKGAYEDIKVFDK 59

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSD---NAKAIFEDFD 119
             + D +   K  G SF          L    N    ++  IA  +D   + K + +   
Sbjct: 60  AHDKDPDP-EKRTGCSF-----DDFIALKGKKNIGEGMDKIIARLADENTDLKGVIDIAH 113

Query: 120 FSSTIARLEKA----GLLYKICKNFSGIEL---HPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           F+    +L         L  +   F   EL         D ++ + YE+L+R+F +E  +
Sbjct: 114 FNDE-KKLGSGKEMVDKLTDLISIFQRPELDFSRNKAEGDDIIGDAYEYLMRKFATESGK 172

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP +V  +   ++                T+ DP CG+G  L  A++       
Sbjct: 173 SKGQFYTPAEVSRILANVV------GISRCTDSSATVCDPACGSGSLLIRAIDA------ 220

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
               P  ++ +GQE E  T  +     ++        R     I+ G+T S   +     
Sbjct: 221 ---APIPIMGYGQEKESTTAGLAKMNAVLH-------RKAEITIKSGNTFSNPQYLDKSD 270

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLFLMHLA 343
               +RF Y ++NPPF  K  +D           E GRF G G  P   +G   +LMH+ 
Sbjct: 271 NSILERFDYIVANPPFSMKNWRDG--------LKEYGRFEGYGDTPPEKNGDYAWLMHIL 322

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G+AA++L    LF G A   E+ IR  +++   I+ I++LP +LF+ T I
Sbjct: 323 KTLKS----NGKAAVILPHGVLFRGNA---EATIREAIIKKHWIKGIISLPANLFYGTGI 375

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--EN 461
           A  + ++       R+G + +I+A+  +     +G K R + +    +I+  +  +   +
Sbjct: 376 AACVLVIDKEGAANRQG-IFMIDASRGYV---KDGNKNR-LRERDIYRIITTFNEQITTD 430

Query: 462 GKFSRMLDYRT 472
            K++R +    
Sbjct: 431 PKYARFVPNDE 441


>gi|312867234|ref|ZP_07727444.1| type I restriction-modification system, M subunit [Streptococcus
           parasanguinis F0405]
 gi|311097363|gb|EFQ55597.1| type I restriction-modification system, M subunit [Streptococcus
           parasanguinis F0405]
          Length = 523

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 68/503 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
            + +     L   IW  A+D+ G     DF + IL     R +   +             
Sbjct: 3   NKESAERKELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISEHMADYFDRAEHEAGD 62

Query: 57  -----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101
                      E    F    ++ + F  +    F N  +       L     N   ++E
Sbjct: 63  LEFRYADLSDQEAERDFKPGTVEDKGFFILPSQLFENVVKNASQNENLNEDLANIFQDIE 122

Query: 102 SYIASF--SDNAKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHP-DTVPDRVM 155
                F   D+ K +F++ D  S I      EK   L  I    + I     +       
Sbjct: 123 KSAIGFKSEDDIKGLFDNLDTRSNILGGTVPEKNKRLSDILNGINSINFGNFEENDIDAF 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + S   +   +F TP+ V  L   L++   D         I  +YDPTCG
Sbjct: 183 GDAYEFLISNYASNAGKSGGEFFTPQTVSKLLARLVMVGKD--------KINKVYDPTCG 234

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L        D              GQE+    + +    M +  +  +     + +
Sbjct: 235 SGSLLLQMKKQYEDHILEDG------FFGQEINMTNYNLARMNMFLHNINYN-----NFD 283

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I++G TL       ++ F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 284 IKRGDTLLNPQHLDEKPFDAIVSNPPYSVKWVGDGDPT-----LINDDRFAPAGKLAPKS 338

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F+MH  N L       GRAAIV      + G A   E  IR++L++N+ +EA++A
Sbjct: 339 KADFAFIMHSLNHLSNR----GRAAIVCFPGIFYRGGA---EKTIRQYLVDNNFVEAVIA 391

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF T+IAT + +L+  K E    K   I+A+  +    N      ++ D     I
Sbjct: 392 LPDNLFFGTSIATTILVLAKNKLE---NKTLFIDASKEFKKETN----NNVLTDSNIDHI 444

Query: 453 LDIYVSRENGKF-SRMLDYRTFG 474
           ++++ +  +  + + ++D    G
Sbjct: 445 VELFTNYRSEDYKATLVDNEVIG 467


>gi|22299771|ref|NP_683018.1| type I site-specific deoxyribonuclease modification subunit
           [Thermosynechococcus elongatus BP-1]
 gi|22295955|dbj|BAC09780.1| type I site-specific deoxyribonuclease modification subunit
           [Thermosynechococcus elongatus BP-1]
          Length = 543

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 117/567 (20%), Positives = 200/567 (35%), Gaps = 80/567 (14%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP----------------TRSA 54
           L   +W  A+ L G     DF   +L F  LR L    E                  R +
Sbjct: 9   LGKTLWAIADTLRGAMNADDFRDYMLAFLFLRYLSDNYEEAAKRELGSDWPQLREDDRRS 68

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE---------SYI- 104
               +      +I+    +      +    EY  S++       + E          +I 
Sbjct: 69  PLAVWYEENPDDIEPFENMMRRKVHYVVKPEYLWSSIAEMARTQDAELLHTLQKGFKFIE 128

Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNI 158
             SFS + + +F + +  S   +L K        L  I    +   L        ++ + 
Sbjct: 129 NESFSSSFQGLFSEINLDS--DKLGKTYKQRNERLCTIIGRIAE-GLAEFPQERDLLGDA 185

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI +F +   + A +F TP+ +  + +A++              +  +YD  CG+G 
Sbjct: 186 YEYLIGQFAAGSGKKAGEFYTPQPISSILSAIVSLDAQDPANGKREKLGKVYDFACGSGS 245

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +    +           +   +GQE    T+ +    ML+  L+     D    I  
Sbjct: 246 LLLNVGRRM-------GRYGVGKLYGQEKNITTYNLARMNMLLHGLK-----DTEFEIFH 293

Query: 279 GSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLP 329
           G +L  +              F   ++NPPF  +WE  +       +  E  RF   GL 
Sbjct: 294 GDSLLNEWLLLREENPAKKIEFDAVVANPPFSLRWEPGE-------ELAEDFRFKDYGLA 346

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     FL+H  + L       G  AI+L    LF G     E +IR+ LL +  I+ 
Sbjct: 347 PKSAADFAFLLHGFHFLHKE----GTMAIILPHGVLFRGNV---EEKIRKKLLLDGNIDT 399

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ L  +LF+ T I   + +L   K   +   V  INA +L+      GK++  +  +  
Sbjct: 400 VIGLAPNLFYSTGIPVCILVLKKCK---KFDDVLFINAAELYEK----GKRQNQLLPEHI 452

Query: 450 RQILDIYVSRENGKFSRMLDYRT-FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            +I++ Y  R   K    LD    F  RR+ +    +  F L+ T             L 
Sbjct: 453 DKIVETYQFRREVK--EELDNGALFVSRRVSMEEIEKNDFNLNITRYVSTAKSEPEIDLQ 510

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESF 535
            +HQ       K    +     + +  
Sbjct: 511 QVHQELAELTRKIEQARDRHNEFLKEL 537


>gi|332535332|ref|ZP_08411131.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035245|gb|EGI71752.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Pseudoalteromonas haloplanktis ANT/505]
          Length = 544

 Score =  281 bits (718), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/516 (21%), Positives = 190/516 (36%), Gaps = 76/516 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----------- 49
           MT+       L   +W  A+ L G      F   +L    LR L    E           
Sbjct: 1   MTQ--EQLKDLGKTLWDIADSLRGAMNADGFRDYMLSLLFLRYLSDNYEAAAQKELGRDY 58

Query: 50  -----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE--- 101
                  ++A    + A   +++            +     +  +++       N E   
Sbjct: 59  PRLTADDKTAQLALWYAENSADVSEFEKQMRRKLHYVIEPHHLWTSIAELARTQNSELLQ 118

Query: 102 ------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPD 148
                  YI   SF+ N K +F + + +S   RL     ++   L  I +  S   +   
Sbjct: 119 TLEVGFKYIEEQSFNSNFKGLFSEINLNS--ERLGKTPADRNKKLCSIIQKISE-GIAEF 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +    ++ + YE LI +F +   + A +F TP+ +  + + +++             +  
Sbjct: 176 SADSDILGDAYEFLISKFAAGSGQKAGEFYTPQPISTILSEIVILDSQEPKTGPKKKLNK 235

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +   H+ D G           +GQE    T  +    ML+  ++   
Sbjct: 236 VLDFACGSGSLLLNVRKHIVDAGGSVGK-----IYGQEKNVTTFNLARMNMLLHGIK--- 287

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D   +I  G TL  D             +F   ++NPPF  +W+  +         GE
Sbjct: 288 --DTEFDIHHGDTLLNDWDMLSEMNPAKKLKFDAIVANPPFSYRWDPSEAQ-------GE 338

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L       G  AI+L    LF G A   E  IR 
Sbjct: 339 DFRFKSHGLAPKSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EQRIRT 391

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL +  I+ ++ LP +LFF T I   + +L   K       V  INA++ +   + +  
Sbjct: 392 KLLNDGHIDTVIGLPANLFFSTGIPVCIIVLKKCKKY---DDVLFINASEHYEKGKRQNT 448

Query: 440 KRRIINDD--QRRQILDIYVSR-ENGKFSRMLDYRT 472
            R    D+    ++I++ Y  R E  ++SR +    
Sbjct: 449 LREGKGDEPNDIKKIVETYQYRSEEERYSRSVSMAE 484


>gi|237742577|ref|ZP_04573058.1| type I restriction-modification system [Fusobacterium sp. 4_1_13]
 gi|229430225|gb|EEO40437.1| type I restriction-modification system [Fusobacterium sp. 4_1_13]
          Length = 520

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 119/560 (21%), Positives = 212/560 (37%), Gaps = 83/560 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           ++     A L   IW  A DL G     DF + +L     R +   L         E   
Sbjct: 3   SKKEQERAELHRTIWAIANDLRGSVDGWDFKQYVLGMLFYRYISENLTNYINRGEFEAGN 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA- 111
           S      L+   + +  E  ++  G+ F   SE  ++     +   NL   + +   N  
Sbjct: 63  SDFNYANLSDEDAIVAKEDLIRTKGF-FILPSELFVNVRKKADKDENLNVTLDTIFKNIE 121

Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
                       K +F+D D ++   +L     ++   L  +      ++L         
Sbjct: 122 SSANGTESENDLKGLFDDIDVNN--NKLGGTVAKRNENLVNLINGVGDMKLGDYQENTID 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   ++ TP++V  L T + L     + K        +YDP 
Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +       K        GQE+   T+ +C   M +  ++ D      
Sbjct: 232 CGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF---- 281

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L  
Sbjct: 282 -DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLAP 335

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ I
Sbjct: 336 KSKADLAFIMHSLSWLAS----NGTAAIVCFPEVMYRSGA---EQKIRKYLIDNNYIDCI 388

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+IAT + +L   K      KV  I+A+  +  + N       + +    
Sbjct: 389 IQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKHID 441

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADITW 504
            I++ +  REN ++   L      Y +I V     +S             +  +E +   
Sbjct: 442 DIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNKEI 496

Query: 505 RKLSPLHQSFWLDILKPMMQ 524
            ++    +    +I K + +
Sbjct: 497 ERIVVREEELRKEIDKIIAE 516


>gi|324115001|gb|EGC08966.1| type I restriction-modification system [Escherichia fergusonii
           B253]
          Length = 518

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 120/486 (24%), Positives = 192/486 (39%), Gaps = 68/486 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW  A D+ G     DF + +L     R +         A  E   Y A  
Sbjct: 5   QQRAELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEAGDESIHYAALD 64

Query: 64  GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I     +  ++  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSIITDDIKDDAIRTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G+ L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVLKGVEGLNLGNFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A  H  +             +GQE+   T  +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKHFDNHIIEEG------FYGQEINHTTFNLARMNMFLHNINYDK-----FDIRLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFGDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+     VQ I+A+ L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTDTS---VQFIDASGLFKKETN----NNILTDGHIEQIMQVFAS 443

Query: 459 RENGKF 464
           + +   
Sbjct: 444 KTDVDH 449


>gi|139438170|ref|ZP_01771723.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC
           25986]
 gi|133776367|gb|EBA40187.1| Hypothetical protein COLAER_00711 [Collinsella aerofaciens ATCC
           25986]
          Length = 853

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/496 (22%), Positives = 188/496 (37%), Gaps = 68/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
           +   LA+ IW++A  +    +  ++   IL F   + L    E  R   R+       S 
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSET-EVARLKARDFAEEDLPSL 60

Query: 66  -NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFE 116
              D E+   V G   Y  +      +  + G     +N+   + +FS N     K +F+
Sbjct: 61  VEDDEETVEFVKGECGYFIAYENLFSTWVSKGGDFEISNVRDALNAFSRNIDPARKRVFD 120

Query: 117 D-FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             FD   + +++L      ++     +      I          V+  IYE+LI  F + 
Sbjct: 121 GIFDTLRTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                T+YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSMLMSEIVSWHLAGR------ENITIYDPTSGSGSLLINIGKAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  + QEL+  T+ +    +++R +  D         + G TL  D    
Sbjct: 234 RNGD---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWF 285

Query: 290 KR------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                             +SNPP+ + W+ +   +          RF  G+   S     
Sbjct: 286 DTVENKDETYDPLFVDAVVSNPPYSQNWDPEDKEL--------DPRFKFGVAPKSKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L       G   IVL    LF G     E  IR+ L+EN  I+AI+ LP ++
Sbjct: 338 FLLHDLYHLRPD----GIMCIVLPHGVLFRGGE---EGTIRKNLVENRHIQAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L  ++       V +++A+  +        K   +     R+I+D   
Sbjct: 391 FFGTGIPTIVMVLRKQRESS---DVLIVDASKHFVKE----GKNNKLRASDIRRIVDAVT 443

Query: 458 SREN-GKFSRMLDYRT 472
           +     KFSR++    
Sbjct: 444 TGATVDKFSRLVTIDE 459


>gi|315453997|ref|YP_004074267.1| type I restriction-modification system [Helicobacter felis ATCC
           49179]
 gi|315133049|emb|CBY83677.1| type I restriction-modification system [Helicobacter felis ATCC
           49179]
          Length = 557

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 111/490 (22%), Positives = 180/490 (36%), Gaps = 77/490 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
                 L   IW  A+ L G     DF + +L     R L   L    +A          
Sbjct: 43  QAKRNELFKTIWGIADKLRGAVDGWDFKQFVLGIIFYRYLSENL----TAYINANERALN 98

Query: 65  SNIDLESFVKV-----------AGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------ 107
            + D  +                   F   SE   + L   +T  NL + +         
Sbjct: 99  PDFDYSALQDAQAKQAKDLLLEEKGFFIPPSELFSNVLKRADTDGNLNTKLNKIFQNIED 158

Query: 108 -------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RV 154
                   +N + +F D D  S   +L     EK   +  + K    +++         V
Sbjct: 159 SSLEGEAQENFRGLFADLDMDS--NKLGNGVKEKNEKIRSLLKAVGAMKIEDYQESGIDV 216

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE L+  + S+  +   +F TP++V  L   L+L     + K        +YDP C
Sbjct: 217 FGDAYEFLMGMYASDAGKSGGEFFTPQEVSELLAKLVLHGQKDINK--------VYDPCC 268

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +                GQE+   T+ +C A M +  +E +       
Sbjct: 269 GSGSLLLKFAKILGKENIKQG------FFGQEINLTTYNLCRANMFLHNIEYN-----QF 317

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I  G TL        + F   +SNPP+  KW  D D +          RF P   L   
Sbjct: 318 DIAHGDTLLNPQLEDFEPFDAIVSNPPYSTKWVGDDDPL-----LINDPRFAPAGVLAPC 372

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
               + F MH+ + L +     G  AIV     L+ G A   E++IR+ L++ + ++ ++
Sbjct: 373 KYADLAFTMHMLSWLSVK----GTCAIVQFPGVLYRGGA---EAKIRQHLIDRNFVDGVI 425

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           AL  DLFF TNI T + IL   K +    +V  ++A+  +         +  +      +
Sbjct: 426 ALAPDLFFGTNIPTCVLILRKNKPD---DRVLFVDASAEFVRQ----DTKNKLAPSNIAK 478

Query: 452 ILDIYVSREN 461
           IL +Y SRE 
Sbjct: 479 ILKVYESREE 488


>gi|86750172|ref|YP_486668.1| type I restriction-modification system, M subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86573200|gb|ABD07757.1| type I restriction-modification system, M subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 515

 Score =  280 bits (717), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 115/485 (23%), Positives = 193/485 (39%), Gaps = 62/485 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAF 62
               A+L   IW  A D+ G     DF + +L     R +         A  E   Y A 
Sbjct: 4   QEQRAALQRKIWDIANDVRGSVDGWDFKQYVLGTLFYRFISENFAAYIEADDESIDYAAL 63

Query: 63  GGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
               I  +     +K  GY  Y  S+  ++   + N  ++L + +A              
Sbjct: 64  SDDVITDDIKDDAIKTKGYFIY-PSQLFVNVAKNANINHSLNTDLAHIFAAIESSANGYP 122

Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162
             + I   F DF +T  RL     EK   L K+ K  + ++          +  + YE L
Sbjct: 123 SEQDIRGLFADFDTTSTRLGHTVSEKNSRLAKVLKRVAELDFGDFHNSQIDLFGDAYEFL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G  L  
Sbjct: 183 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTQVNK--------IYDPACGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H  +              GQE+   T+ +    M +  +  D       NIQ+G TL
Sbjct: 235 AKKHFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQRGDTL 283

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
           ++  F   + F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 284 TQPHFQDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      +   A   E +IR++L++N+ +E ++AL ++LF+
Sbjct: 339 LHALSYL----SAKGRAAIVCFPGIFYRDGA---EKKIRQYLVDNNYVETVIALASNLFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IA  + +L+  KT+     +Q I+A+        +     ++ DD   ++++I+  +
Sbjct: 392 GTTIAVTILVLAKNKTDTA---IQFIDASG--EEFFKKATNTNLMTDDHIARVMEIFDRK 446

Query: 460 ENGKF 464
           E+   
Sbjct: 447 EDVDH 451


>gi|219669968|ref|YP_002460403.1| type I restriction-modification system, M subunit
           [Desulfitobacterium hafniense DCB-2]
 gi|219540228|gb|ACL21967.1| type I restriction-modification system, M subunit
           [Desulfitobacterium hafniense DCB-2]
          Length = 525

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 111/562 (19%), Positives = 204/562 (36%), Gaps = 71/562 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPTRSAVREKYLAF 62
            + L N +W +A+ L G    +++   +L     + L         E  +  V E     
Sbjct: 1   MSELNNQLWASADILRGKMDASEYKNYLLGLVFYKYLSDQELRAVYEEEQGKVAEYPSRD 60

Query: 63  -----------GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
                        +    E   K  GY     S +      +     ++     +F +  
Sbjct: 61  EQFSGLLDWYNDDAAGIREIISKKLGYFIEPDSLFYTFRKKAGEYELHISDIQNAFIELG 120

Query: 112 K------AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +       +F+D D +ST       ++   + ++ K    I+L        V+ + YE+L
Sbjct: 121 RQGEHFAGLFDDVDLASTKLGANAQQRNVTITEVIKALDEIDLF--GHDGDVIGDAYEYL 178

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP+ V  + + ++    +            +YDPT G+G  + +
Sbjct: 179 IGQFAAGAGKKAGEFYTPQAVSKIISEIVAIGQEET------APFHIYDPTMGSGSLMLN 232

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               V +       P  +  HGQEL   T+ +    +++  +E          ++ G TL
Sbjct: 233 IRRFVKN-------PGQVHYHGQELNTTTYNLARMNLILHNVE-----QSQMRLRNGDTL 280

Query: 283 SKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISDGSMLF 338
            +D  T +   F+  + NPP+   W  D   +          RF   G L   S     F
Sbjct: 281 DEDWPTDEPYLFNAVVMNPPYSANWSADGKFLS-------DPRFEQYGKLAPKSKADFSF 333

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L       G   IVL    LF G     E  IR+ LL+   IEA++ LP ++F
Sbjct: 334 LLHGFYHLNEK----GTMGIVLPHGVLFRGA---SEGVIRKTLLDMGAIEAVIGLPANIF 386

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I T + IL   + +     V  I+A+  +   +N    +  I     R+I+D Y  
Sbjct: 387 YGTSIPTVVLILKKNRAKR---DVLFIDASKAFEKQKN----QNCIRSQDIRKIVDTYKK 439

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           R +   ++ + DY         +  P  +    ++  +  +        L+   +    +
Sbjct: 440 RSSSPQYAHLADYDEIVRNDYNLNIPRYVDTFEEEAPIDIVALSKEITDLNLQIKQREAE 499

Query: 518 ILKPMMQQIYPYGWAESFVKES 539
            L  + Q        E      
Sbjct: 500 FLGMLSQLAITDETKELIEATK 521


>gi|126173066|ref|YP_001049215.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
 gi|125996271|gb|ABN60346.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS155]
          Length = 515

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 118/485 (24%), Positives = 188/485 (38%), Gaps = 65/485 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59
              A L   IW  A ++ G     DF + +L     R +    E               +
Sbjct: 5   QQRAELQRQIWAIANEVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDESINYAGMF 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
                     E  +K  GY  Y  S+   +   + N   NL + +A+             
Sbjct: 65  DDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANANKNENLNTDLAAIFAAIENSANGYD 123

Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHL 162
             K I   F DF +T  RL      K   L  + K  +G+ +   +   + +  + YE L
Sbjct: 124 SEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLNITQFEDNENDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H                 GQEL   T+ +    M +  +  D       NIQ G TL
Sbjct: 236 AKKHFDAHIIEEG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTL 284

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
            +  F   + F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 285 IEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAFV 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  N L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF
Sbjct: 340 LHALNYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVISLAPNLFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T IA  + +LS  KT+      Q I+A++L+    N       ++++   QI+ ++ S+
Sbjct: 393 GTTIAVNILVLSKHKTDTTT---QFIDASNLFKKETN----NNTLSNEHIEQIIKVFASK 445

Query: 460 ENGKF 464
           EN + 
Sbjct: 446 ENVEH 450


>gi|317014260|gb|ADU81696.1| type I restriction enzyme M protein [Helicobacter pylori
           Gambia94/24]
          Length = 551

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 122/565 (21%), Positives = 208/565 (36%), Gaps = 78/565 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
              +     L N IWK A +L G     DF + +L     R +   +    +        
Sbjct: 36  NHASLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKLDP 95

Query: 57  ---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
                    E+      S I+ + F       F N  + +        T  N+ + I   
Sbjct: 96  NFDYASLSDEEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPHNEDLNVTLQNIFTEIEKS 155

Query: 108 S------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
           S      +N K +F D D +S     +   +   L KI +   G++L         V  +
Sbjct: 156 SLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGD 215

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   ++ TP++V  L   + L   +++ K        +YDP CG+G
Sbjct: 216 AYEYLMAMYASNAGKSGGEYFTPQEVSELLAKITLHNQESINK--------VYDPCCGSG 267

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      + D              GQE+   T+ +C   M +  +          +I 
Sbjct: 268 SLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFHIA 316

Query: 278 QGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDG 334
            G TL        + F   +SNPP+  KW  D + +          RF     L   +  
Sbjct: 317 LGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMN-----DERFNKAGALAPKNAA 371

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F MH+ + L       G AAIV     L+ G A   E +IR +L++ + I+ ++ALP
Sbjct: 372 DLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIALP 424

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF TNIAT + +L   K ++       I+A+  +        K+  + +  R +IL 
Sbjct: 425 ENLFFGTNIATCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKERNREKILQ 477

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            Y+ R+  K    L           + +     + L        E       +  L+   
Sbjct: 478 TYIERKAIKHFAALAN---------IEKIQENDYNLSVNRYVEQEDTKEIIDIKALN--- 525

Query: 515 WLDILKPMMQQIYPYGWAESFVKES 539
             +I + + +Q       ES +KE 
Sbjct: 526 -GEISQIVKKQSALRNSLESIIKEL 549


>gi|300313843|ref|YP_003777935.1| Type I restriction-modification system methyltransferase subunit
           [Herbaspirillum seropedicae SmR1]
 gi|300076628|gb|ADJ66027.1| Type I restriction-modification system methyltransferase subunit
           protein [Herbaspirillum seropedicae SmR1]
          Length = 860

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/500 (21%), Positives = 187/500 (37%), Gaps = 72/500 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
           +   LA  IW +A  +    +  ++   IL F   + L   LE  R AV + +       
Sbjct: 2   NKQQLAAKIWASANQMRSKIEANEYKDYILGFIFYKYLSDKLE--RFAVSQDFSKEDIQG 59

Query: 66  --NIDLESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFS----DNAKAIF 115
               D E          Y  S      +   LG      N+   +++FS     N K +F
Sbjct: 60  LSEDDEEIVNFFKSNLGYFISYPNLFSTWLALGGDFEVANVRVALSAFSRLIHPNHKRLF 119

Query: 116 EDF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +       + +++L ++       +  + +    I          V+  IYE+LI  F +
Sbjct: 120 DGIFKTLETGLSKLGESAASQTKAISALLQLIKDI-PMDGRQGYDVLGFIYEYLISMFAA 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++                 +YD T G+G  L +    +A
Sbjct: 179 NAGKKAGEFYTPHEVSVLMSEIIAHHLKDR------KTIQIYDSTSGSGSLLLNIGQAIA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL 286
                      +    QEL+  T+ +    +++R +       L  NI  +   TL  D 
Sbjct: 233 KHMVD---KDNIKYFAQELKENTYNLTRMNLVMRGI-------LPSNIVTRNADTLEDDW 282

Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                      +        +SNPP+ +KW+ +    +         RF  GL   S   
Sbjct: 283 PYFDDQDPVNSYNPLYLDAVVSNPPYSQKWDPEHKEADPR-----YARF--GLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    L+      G  AIVL    LF G     E  IR+ L+EN+ +E I+ LP+
Sbjct: 336 YAFLLHDLYHLKPD----GIMAIVLPHGVLFRGGE---EGAIRKTLIENNHLETIIGLPS 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T I T + +L  ++       V +++A+  +        K   +     ++I D+
Sbjct: 389 NIFFGTGIPTIILVLRQKRESS---DVLIVDASKGFAKE----GKNNKLRACDIKKIADV 441

Query: 456 YVSRENGK-FSRMLDYRTFG 474
              R N   +SR++      
Sbjct: 442 VTGRLNVPGYSRLVPKAELQ 461


>gi|302381005|ref|ZP_07269466.1| type I restriction-modification system, M subunit [Finegoldia magna
           ACS-171-V-Col3]
 gi|302311226|gb|EFK93246.1| type I restriction-modification system, M subunit [Finegoldia magna
           ACS-171-V-Col3]
          Length = 522

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 115/564 (20%), Positives = 202/564 (35%), Gaps = 81/564 (14%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-------- 49
           M+           L   IW  A++L G     DF   IL     R +   +         
Sbjct: 1   MSIDNKKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENITNYINTGEI 60

Query: 50  -------PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
                         E         +  + F  +    F N            N    LE 
Sbjct: 61  EAGNVDFDFAQMSDEMAEQAREGLVQEKGFFILPSELFCNV---RAKAKDDENLNETLER 117

Query: 103 YIASFSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP- 147
                 ++AK          +F+DFD +S   +L     ++   L K+    + + L   
Sbjct: 118 AFRHIEESAKGSESESDFAGLFDDFDVNS--NKLGSTVAKRNEKLCKLLDGVADMNLGDV 175

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    + YE+L+  + S   +   +F TP DV  L T L       + K       
Sbjct: 176 KDHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK------- 228

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L  A   +       +       +GQE+   T+ +C   M +  +  D
Sbjct: 229 -VYDPACGSGSLLLKAEKIL------GRDKIRNGFYGQEINITTYNLCRINMFLHDIGFD 281

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  NI    TL        + F   +SNPP+  KW  + + +          RF P
Sbjct: 282 KF-----NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGNDNPL-----LINDPRFSP 331

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N
Sbjct: 332 AGVLAPKSKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EKKIRKYLIDN 384

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + ++ ++ LP +LFF T+IAT + ++   KT+    K   I+AT     + N       +
Sbjct: 385 NFVDCVIQLPPNLFFGTSIATCIMVMKKNKTD---NKTLFIDATKECIKVTN----NNKL 437

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             D   +I++ + +R   + FS +  Y         +     +     +  +  ++ +  
Sbjct: 438 TADNMDKIVECFANRSEIEHFSHLATYDEVEENDYNLSVSTYVEAEDTREKIDIVKLNAE 497

Query: 504 WRKLSPLHQSFWLDILKPMMQQIY 527
            +++    Q    D +  ++ +I 
Sbjct: 498 IKEIVAREQ-VLRDEIDKIISEIG 520


>gi|15789429|ref|NP_279253.1| RmeM [Halobacterium sp. NRC-1]
 gi|10579755|gb|AAG18733.1| type I restriction modification enzyme, M subunit [Halobacterium
           sp. NRC-1]
          Length = 499

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 128/537 (23%), Positives = 222/537 (41%), Gaps = 58/537 (10%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-LAF 62
            + +   L + ++K A+ +      TD+ + ILP    + +    E  R  + E+Y   F
Sbjct: 1   MSLTLDELDSHLFKCADIIRDAVDPTDYKEYILPLVFYKAISDEYEQEREEIVEEYGEDF 60

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFD 119
             +    +  +   G+       ++     S N    + +    F   + +   IF + +
Sbjct: 61  ADNANLYDVPIVPEGH------RWNDLRQESENVDEAINNAFTEFTQANPDLSGIF-NAN 113

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F       +    L K+ ++ S  +L  D+VP  ++   Y  L+R F  E  +    F T
Sbjct: 114 FMEAGGLTDD--RLIKLVEHLSTYDLDRDSVPPDMLGEAYMDLVRHFAEEEGKSGGQFFT 171

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V L   L+ D  D           T +DPT G+GG LT+A  +  +       P  
Sbjct: 172 PPHIVQLCVRLVDDFAD---------GMTFHDPTVGSGGMLTEAAKYYREAQG--GDPSK 220

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
           L   GQE+ P+  A+    + +  L  +        I++G +L+   FT     +RF   
Sbjct: 221 LTFTGQEINPDIAAIARMNLSLHTLNGE--------IERGDSLASPGFTDGDDLERFDRV 272

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELP---P 350
           L+N PF   W KD      + ++ + GRF     LP+   G   F+MH+A +L+ P    
Sbjct: 273 LANFPFSADWAKD------DLQDDQYGRFDWHTKLPRADRGDYAFIMHIAEQLKEPDCGD 326

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG+AAIV+    LF       E   R+ +LENDL+EAIV LP +LF   +I + + +L
Sbjct: 327 ESGGKAAIVIPHGVLFR----KHEQRYRQPMLENDLVEAIVGLPENLFQNNSIPSAILVL 382

Query: 411 SNRKTEERRGKVQLINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
           +  K  +R G+VQ I+A D   +  + N    +  + DD    I++ +       + SR 
Sbjct: 383 NTDKPADREGEVQFIHAADEAFYEELSN----QNELTDDGLDHIVENFDDWTTEERVSRT 438

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +           +   L +     +  +   E     R+L    +     + + M  
Sbjct: 439 VGIEEIEENDFNLNIALYVDTTEPEEDIDVNEELAELRELQAEREEIESRMTEHMEA 495


>gi|219850152|ref|YP_002464585.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485]
 gi|219544411|gb|ACL26149.1| N-6 DNA methylase [Chloroflexus aggregans DSM 9485]
          Length = 537

 Score =  280 bits (716), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/492 (18%), Positives = 157/492 (31%), Gaps = 75/492 (15%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              +W+ A  L G     ++  V+L    L+ +  A E   + +  +           E 
Sbjct: 25  EAELWQMANALRGSMDAAEYKHVVLGLIFLKYISDAFEEQHARLEAERAQGADPEDPDEY 84

Query: 72  FVKVAGYSFYNTSEY------------SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
               A   F+   E             ++  L            I   +     +    D
Sbjct: 85  ---RAVNVFWVPPEARRAHRNARVKQPTIGRLVDDAMAG-----IERDNPALTGVVPKND 136

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               + R      L ++      I +  +      V+  + E    +F S          
Sbjct: 137 DRPVLDRQH----LGRLIDLIGTIRVGDEEARAKDVLGRVDEEGRSQFASAEGTQRGALT 192

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHH 234
           TPR VV L    L                 + DP CG+ G    ++  +        +  
Sbjct: 193 TPRCVVKLPVERL-----------DPYRGRVDDPCCGSAGMFVQSVEFIRAHANGNGNGG 241

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K    +  +GQE    T  +    + IR ++          I  G T   D F   +  +
Sbjct: 242 KTGADISIYGQESNYTTWRLAKMNLAIRGIDG--------QIAHGDTFHNDRFPDLKADF 293

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF  K    +       +  +  R+  G+P + + +  ++  + + L      G 
Sbjct: 294 ILANPPFNVKDWGGE-------RLRDDKRWKYGVPPVGNANFAWVQRIIHHLAPTGYAGF 346

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI----- 409
             A   + S   N    SGE EIR+ ++E DL++ +VALP      T I   LW      
Sbjct: 347 VLA---NGSMSSN---RSGEGEIRKHIIEADLVDCMVALPGRRCSATQIPACLWFSARDT 400

Query: 410 -----LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGK 463
                     +  RRG V+ I+A  +   +         + D+   +I D   +     +
Sbjct: 401 SGRGGFGPHPSRNRRGHVRFIDARTMGCMVDRT---HCDLTDEDITKIADTSHAWRGEQE 457

Query: 464 FSRMLDYRTFGY 475
                D   FG 
Sbjct: 458 AGDDADVPGFGT 469


>gi|315586486|gb|ADU40867.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori 35A]
          Length = 529

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 123/580 (21%), Positives = 209/580 (36%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--- 49
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQAPKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 50  --PTRSAVR---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
               R             E+        I  + F       F N  + + +      T  
Sbjct: 61  NRQEREHDLSFDYALLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPNNGDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI +    ++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKIIQAIGDMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  +W  DK+ +          RF P 
Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSIEWVGDKNPI-----LINDERFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L       + F MH+ + L       G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKKTADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 EHNREKILKTYTERKTIKHFSALAS---------MEKIKENDYNLSVNRYVEQEDTKEVI 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L+     +I + + +Q       +  +KE  +   A
Sbjct: 494 DIKALN----AEISQIVQRQSALRNSLDRIIKELEEGQNA 529


>gi|300741622|ref|ZP_07071643.1| type I restriction-modification system, M subunit [Rothia
           dentocariosa M567]
 gi|300380807|gb|EFJ77369.1| type I restriction-modification system, M subunit [Rothia
           dentocariosa M567]
          Length = 557

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 114/488 (23%), Positives = 187/488 (38%), Gaps = 72/488 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVRE-----KYLA 61
           A L   IW+ A DL G     DF + +L     R +   L    T            Y  
Sbjct: 43  AELHRTIWRIANDLRGSVDGWDFKQYVLGMMFYRFISENLTEYITYEEQEAGAKGFDYAQ 102

Query: 62  FGGSNIDLESFVKVAGYS-FYNTSEYSLSTLGSTN-TRNNLESYIAS------------- 106
                IDL+   ++     F+         + +   T  NL   +               
Sbjct: 103 INDLEIDLDVVQEIVKERGFFLYPSQLFENVYAQARTDENLNETLEKVFQAVEESTKNTQ 162

Query: 107 FSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP--DRVMSNIY 159
              N   +F+DFD +S   +L     ++   LYK+    + + L        +    + Y
Sbjct: 163 SERNFSGLFDDFDVNSK--KLGSSVQDRNKTLYKLMGAVAEMNLETSYRQSANDTFGDAY 220

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+L+  + +   +   ++ TP++V  L   +  D            +  +YDP CG+G  
Sbjct: 221 EYLMGMYAANAGKSGGEYYTPQEVSELLARIATDGK--------TQVGRVYDPACGSGSL 272

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L      +                GQE  P T+ +C   ML+  +  D       +I  G
Sbjct: 273 LLKFAKLLGAENVKE-------FLGQESNPTTYNLCRINMLLHNIPFDKF-----DIAHG 320

Query: 280 STLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            TL        + F   +SNPP+  KWE D + +          R+ P   L   +   +
Sbjct: 321 DTLIAPQHRHLEPFEAIVSNPPYSTKWEGDSNPL-----LINDDRYAPAGVLAPKAKADL 375

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F MH+ + L       G AAIV     L+ G A   E +IR +LL N+ ++A++ LP D
Sbjct: 376 AFTMHMLSSLAED----GTAAIVEFPGVLYRGGA---ERKIREYLLRNNYVDAVIQLPPD 428

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T I T + +L  +K   R   V  ++A+  +      G K R++ +  R +I    
Sbjct: 429 LFFGTAIGTCIIVL--KKGTRRDTSVLFVDASAEFE---RVGNKNRLL-ESHREKIYQAV 482

Query: 457 VSRENGKF 464
            +REN ++
Sbjct: 483 RTRENVQY 490


>gi|295091335|emb|CBK77442.1| type I restriction system adenine methylase (hsdM) [Clostridium cf.
           saccharolyticum K10]
          Length = 520

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 114/554 (20%), Positives = 201/554 (36%), Gaps = 71/554 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRSAVR 56
           T+       L   IW  A++L G     DF   +L     R +   L         +A  
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLCNYINSGEAAAGN 63

Query: 57  EKYLAFGGSNIDLESFVK---VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
             +      + D E            F   SE   +   +     NL   +     + + 
Sbjct: 64  SDFDFAKMPDEDAEEARDGLVEEKGFFILPSELFCNVRANAANDENLNETLERVFRHIEE 123

Query: 114 -------------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154
                        +F+D+D +S   +L     ++   L K+      ++L          
Sbjct: 124 SAKGSEAENDFAGLFDDYDVNS--NKLGSTVAKRNEKLAKLLNGVGEMKLGDVKDHSIDA 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP C
Sbjct: 182 FGDAYEYLMMMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK--------VYDPAC 233

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A   +       +       +GQE+   T+ +C   M +  +  D       
Sbjct: 234 GSGSLLLKAEKIL------GRDAIRNGFYGQEINITTYNLCRINMFLHDVGFDKF----- 282

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           NI    TL        + F   +SNPP+  KW  D + +          RF P   L   
Sbjct: 283 NIACEDTLISPQHWDDEPFELIVSNPPYSIKWVGDDNPL-----LINDPRFAPAGVLAPK 337

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   M F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+
Sbjct: 338 SKADMAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EQKIRKYLVDNNYVDCII 390

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP++LFF T+IAT + ++   K +    K   I+AT     + N       +  +    
Sbjct: 391 QLPSNLFFGTSIATCIMVMKKNKAD---NKTLFIDATRECVKVTN----NNKLTPENIDH 443

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D +  RE  + F  +  Y         +     +     +  +  ++ +   +++   
Sbjct: 444 IVDAFAKREEVEHFVHLASYDEVSGNDYNLSVSTYVEAEDTREKIDIVKLNAEIKEIVAR 503

Query: 511 HQSFWLDILKPMMQ 524
            Q    ++ K + +
Sbjct: 504 EQMLRDELDKIIAE 517


>gi|301162152|emb|CBW21697.1| putative type I restriction enzyme methylase [Bacteroides fragilis
           638R]
          Length = 517

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 107/544 (19%), Positives = 209/544 (38%), Gaps = 77/544 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E   ++  +   
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIETYANSALDDDE 58

Query: 58  --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +  ++ D     +           ++   ++  S++        N    LE  +
Sbjct: 59  VTFKELWEMTDSDAPELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKRKENVLPMLERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGH--------NRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +                 +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAASIGKAAY----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            S  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SSFKIENGDTLEWDAFDDMQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI
Sbjct: 331 KTADYAFILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++     +  +     +
Sbjct: 384 IGLPANIFYGTSIPTCILVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPQHIQ 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y  R+  + +S +   +        +  P    ++        ++      +++ 
Sbjct: 438 KIVETYRDRKEIEKYSHLATLQEVAENDYNLNIP---RYVDTFEEEEPIDIKAVMAEIAE 494

Query: 510 LHQS 513
           L   
Sbjct: 495 LEAK 498


>gi|210630770|ref|ZP_03296594.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279]
 gi|210160366|gb|EEA91337.1| hypothetical protein COLSTE_00479 [Collinsella stercoris DSM 13279]
          Length = 919

 Score =  279 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 110/496 (22%), Positives = 188/496 (37%), Gaps = 68/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
           +   LA+ IW++A  +    +  ++   IL F   + L    E  R   R+       S 
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSET-EVARLKARDFAEEDLPSL 60

Query: 66  -NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFE 116
              D E+   V G   Y  +      +    G     +N+   +++FS N     K +F+
Sbjct: 61  VEDDEETVEFVKGECGYFIAYDNLFSTWVAKGGDFEISNVRDALSAFSRNIDPARKRVFD 120

Query: 117 D-FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             FD   + +++L      ++     +      I          V+  IYE+LI  F + 
Sbjct: 121 GIFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++                T+YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSMLMSEIVSWHLAGR------ENITIYDPTSGSGSLLINIGKAVAR 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  + QEL+  T+ +    +++R +  D         + G TL  D    
Sbjct: 234 RNGD---PDSIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWF 285

Query: 290 KR------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                             +SNPP+ + W+ +   +          RF  G+   S     
Sbjct: 286 DTVENKDETYDPLFVDAVVSNPPYSQNWDPEDKEL--------DPRFKFGVAPKSKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L       G   IVL    LF G     E  IR+ L+EN  I+AI+ LP ++
Sbjct: 338 FLLHDLYHLRPD----GIMCIVLPHGVLFRGGE---EGAIRKNLVENRHIQAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L  ++       V +++A+  +        K   +     R+I+D   
Sbjct: 391 FFGTGIPTIVMVLRKQRESS---DVLVVDASKHFVKE----GKNNKLRASDIRRIVDAVT 443

Query: 458 SREN-GKFSRMLDYRT 472
           +     KFSR++    
Sbjct: 444 AGATVDKFSRLVTIDE 459


>gi|154487133|ref|ZP_02028540.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis
           L2-32]
 gi|154084996|gb|EDN84041.1| hypothetical protein BIFADO_00973 [Bifidobacterium adolescentis
           L2-32]
          Length = 853

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 190/495 (38%), Gaps = 66/495 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLAFGGS 65
           +   LA+ IW++A  +    +  ++   IL F   + L    L   +     +      +
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSENELMRLKDTDFTEDDLLLLT 61

Query: 66  NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFED 117
             + +    V     Y  S      +    G+    +N+   +++FS N     K +F+ 
Sbjct: 62  EDNPDIVEGVQDECGYFISYDNLFSTWVKKGNDFEISNVRDALSAFSRNINPARKRVFDG 121

Query: 118 -FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            FD   + +++L      ++     +      I          V+  IYE+LI  F +  
Sbjct: 122 IFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDSRQDYDVLGFIYEYLISNFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L      VA  
Sbjct: 181 GKKAGEFYTPSEVSQLMSEIVAWHLQGR------EQIKIYDPTSGSGSLLIHIGQSVARR 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +   P  ++ + QEL+  T+ +    +++R +  D         + G TL  D     
Sbjct: 235 NGN---PNSIMYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWFD 286

Query: 291 R------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                            +SNPP+ + W+     +          RF  G+   S     F
Sbjct: 287 TLENKEETYNPLFVDAVVSNPPYSQNWDPTDKEI--------DPRFSYGIAPKSKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L       G   IVL    LF G     E +IR+ L+EN  I+AI+ LP ++F
Sbjct: 339 LLHDLYHLRAD----GIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-V 457
           F T I T + +L  ++ +    KV +++A+  +        K   +     ++I+D+   
Sbjct: 392 FGTGIPTIVMVLRKKRDD---DKVLIVDASKHFIKD----GKNNKLQASDIKRIVDVVSN 444

Query: 458 SRENGKFSRMLDYRT 472
           +R   KFSR++    
Sbjct: 445 NRTVPKFSRLVSIDE 459


>gi|301300590|ref|ZP_07206784.1| type I restriction-modification system, M subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851807|gb|EFK79497.1| type I restriction-modification system, M subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 529

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 110/481 (22%), Positives = 193/481 (40%), Gaps = 71/481 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRSAVREKYLAF 62
           +L   +   A+ L       ++   IL     + L  +       L    +   E+    
Sbjct: 7   TLERSLDSAADVLRSKMDANEYKNYILGTIFYKYLSDSMLYYVAELLEEENVSLEEAQKL 66

Query: 63  GGSNIDLESFVKVAGYSF------YNTSEYSLSTLGS-----TNTRNNLESYIASFSDNA 111
              N D +  ++     F       NT    L ++ +     +   +   S I S     
Sbjct: 67  YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNS-IESQGKEF 125

Query: 112 KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F+D+D  S   RL       +  + K+      +E+     P+  + N YE+LI++F
Sbjct: 126 EGLFDDYDLYSK--RLGNTAQKQSDTISKVLSAIGKLEIV--KTPEDTLGNAYEYLIKQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE  + A +F TP+ V  L   L L   D           T+YDPT G+G  L +   +
Sbjct: 182 ASESGKKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKY 235

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V       +    +   GQE+   T+ +    M++  ++      +++ ++   TL +D 
Sbjct: 236 V-------EHSERITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDW 283

Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342
              +   F   + NPP+ +KW  +           +  RF     LP  S     FL+H 
Sbjct: 284 PVEEITNFDTVVMNPPYSQKWSANAGF-------KDDPRFSAYGVLPPKSKADYAFLLHG 336

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      G  AIVL    LF G A   E +IR+ LLEN  I+A++ LP +LF+ T+
Sbjct: 337 YYHLKHS----GVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTS 389

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I T + +L   K +     V  I+A+  +  ++     +  + D+   +IL  Y  R++ 
Sbjct: 390 IPTTIVVLKKDKQDR---DVLFIDASKDFRKVKT----QNELRDEDVEKILTTYKERKDI 442

Query: 463 K 463
            
Sbjct: 443 D 443


>gi|261839335|gb|ACX99100.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori 52]
          Length = 529

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 125/580 (21%), Positives = 212/580 (36%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT- 51
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 52  -RSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
            +                E+        I+ + F       F N  + + +      T  
Sbjct: 61  NKEERERDPNFDYALLSDEEAEDAKEGLIEEKGFFIPPSALFCNVLKNARTNDDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILEAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  D + +          RF P 
Sbjct: 284 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPI-----LINDERFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L       G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGHA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 EHNREKILKTYTERKIIKHFSALAN---------IEKIKENDYNLSVNRYVEQEDTKEVI 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L+     +I + + +Q       ES +KE  +   A
Sbjct: 494 DIKALN----AEISQIVEKQSALRNSLESIIKELEEGQNA 529


>gi|187736397|ref|YP_001878509.1| type I restriction-modification system, M subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426449|gb|ACD05728.1| type I restriction-modification system, M subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 853

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 180/488 (36%), Gaps = 72/488 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
           +   LA+ IW++A  +    +  ++   IL F   + L            ++        
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSD----KEVKFLKENDWTDDDL 57

Query: 66  ----NIDLESFVKVAGYSFYNTS----EYSLSTLGSTNTRNNLESYIASFS----DNAKA 113
                 D E+   +     Y  S      +    GS     ++   +++FS     + K 
Sbjct: 58  PHVTEDDAETVDYIRSNVGYFISYKHLFSTWIDKGSDFNAADVTEALSAFSRLINPSHKK 117

Query: 114 IFEDF--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           +F+       + +++L +        +  +      I          V+  IYE+LI  F
Sbjct: 118 VFDKVFATLETGLSKLGENSGARTKAIRDLLHLIKDI-PMDGRQDYDVLGFIYEYLISNF 176

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP +V  L + ++        +        +YDPT G+G  L +    
Sbjct: 177 AANAGKKAGEFYTPHEVSLLMSEIVAAHLKDRQQIK------IYDPTSGSGSLLINIGKC 230

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           VA           +  + QEL+  T+ +    +++R +  +         + G TL +D 
Sbjct: 231 VARYMGGG---DNIKYYAQELKENTYNLTRMNLVMRGILPNNIVT-----RNGDTLEEDW 282

Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                      +        +SNPP+ + W                 R+  GL       
Sbjct: 283 PYFDDNDPVNTYDPLYVDAVVSNPPYSQSW--------NPADKESDPRYRFGLAPKGKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    L+      G   IVL    LF G     E  IRR L+E + I+AI+ LP 
Sbjct: 335 YAFLLHDLYHLKPD----GIMTIVLPHGVLFRGGT---EGAIRRNLVEYNHIDAIIGLPA 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T I T + +L   K +     V +++A+  +  +     K  ++     ++I+D+
Sbjct: 388 NIFFGTGIPTIIMVL---KQKRENTDVLIVDASKGFAKV----GKNNVLRACDIKKIVDV 440

Query: 456 YVSRENGK 463
             +R + +
Sbjct: 441 VSARADVE 448


>gi|329123773|ref|ZP_08252331.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
 gi|327469260|gb|EGF14731.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus aegyptius ATCC 11116]
          Length = 514

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 112/489 (22%), Positives = 185/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT      A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MTIAMQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  +N             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFNEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  
Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|217974625|ref|YP_002359376.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS223]
 gi|217499760|gb|ACK47953.1| type I restriction-modification system, M subunit [Shewanella
           baltica OS223]
          Length = 523

 Score =  279 bits (714), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 117/489 (23%), Positives = 187/489 (38%), Gaps = 69/489 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59
              A L   IW  A D+ G     DF + +L     R +    E                
Sbjct: 5   QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEAYITGGDESVNYAAMD 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------SDNA-- 111
            +        +  ++  GY F   S+   +   + +   NL + +A+       S N+  
Sbjct: 65  DSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLAAIFTAIENSANSYD 123

Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICK-----NFSGIELHPDTVPDRVMSNI 158
             K I   F DF +T  RL      K   L  + K      F   E   +     +  + 
Sbjct: 124 SEKDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGDA 183

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G 
Sbjct: 184 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGS 235

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A  H                 GQEL   T+ +    M +  +  D       NIQ 
Sbjct: 236 LLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQL 284

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 285 GDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKAD 339

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  
Sbjct: 340 FAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAP 392

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T IA  + +LS  KT+      Q I+A+ L+    N       ++++   QI+ +
Sbjct: 393 NLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNTLSNEHIEQIIKV 445

Query: 456 YVSRENGKF 464
           + S+E+   
Sbjct: 446 FASKEDVDH 454


>gi|157164462|ref|YP_001466969.1| type I restriction-modification system, M subunit [Campylobacter
           concisus 13826]
 gi|112800937|gb|EAT98281.1| type I restriction-modification system, M subunit [Campylobacter
           concisus 13826]
          Length = 517

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 116/532 (21%), Positives = 205/532 (38%), Gaps = 66/532 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M+E     A L N IW  A ++ G     DF + +L     R +         A  +   
Sbjct: 1   MSEEAQRRA-LQNQIWSIANEVRGAVDGWDFKQYVLGTLFYRFISENFTDYIEAGDDSID 59

Query: 59  YLAFGGSNIDLES---FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---- 111
           Y + G   ID E     ++  GY  Y  S+   + + + +   NL + +     +     
Sbjct: 60  YASMGDDEIDDEQKKVIIEEKGYFIY-PSQLFKNVVKNASNNANLNTDLDQIFKSIEGSA 118

Query: 112 ------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
                 + I   F DF +T  RL     +K   L  +    +G++          +  + 
Sbjct: 119 AGFESEQDIKGLFADFDTTSNRLGNSVADKNRRLAAVLNGVAGLDFGDFKDNHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP++V  L + L +   +++ K        +YDP CG+G 
Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQNVSKLISELAMHGQESVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A                    GQE+   T  +    M +  +          +I+ 
Sbjct: 231 LLLQAKKRFDKHEVEQG------FFGQEINHTTFNLARMNMFLHNIN-----YSKFHIEL 279

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL        + F   +SNPP+   W    D            RF P   L   S   
Sbjct: 280 GDTLLDPKLQDDKPFDAIVSNPPYSINWIGSDDPT-----LINDARFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+MH  + L    +  GRAAIV      + G A   E +IR +L++ + +E I+AL  
Sbjct: 335 FAFIMHALSYL----SAKGRAAIVSFPGIFYRGGA---EKKIREYLVKENFVETIIALAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K+E    K Q I+A++ +    N      ++  +  ++I++I
Sbjct: 388 NLFYGTSIAVNILVLSKHKSE---NKTQFIDASEFFEKRTN----NNVLTSEHIKKIVEI 440

Query: 456 YVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           + S+E     +  +D  T       +     +     +  +   E ++  ++
Sbjct: 441 FASKEEIAHVATSVDNDTIAQNDYNLAVSSYVEPKDTREKIDINELNLQIKE 492


>gi|154507566|ref|ZP_02043208.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797200|gb|EDN79620.1| hypothetical protein ACTODO_00045 [Actinomyces odontolyticus ATCC
           17982]
          Length = 545

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 185/502 (36%), Gaps = 79/502 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----TRSAVREK----- 58
           A L   IW+ A DL G     DF   +L F   R +   L        R A+  +     
Sbjct: 27  AELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTPE 86

Query: 59  ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIA------ 105
                 Y      + +      V    F+         + +    + NL   ++      
Sbjct: 87  EAAAFDYATLSNEDAEAARDGIVKEKGFFIRPSDLFGNVRAQAAGDENLNETLSYAFRFI 146

Query: 106 -------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
                      + + +F+D D +ST  +L     ++   L KI      + L        
Sbjct: 147 ENSARGSGSESDLRGLFDDVDVNST--KLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQID 204

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   +F TP++V  +   L LD            +  +YDP 
Sbjct: 205 AFGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALDGRSD--------VARVYDPC 256

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +                GQE+   T+ +C   M +  +        +
Sbjct: 257 AGSGSLLLKFAKLL-------GPSSSRQYFGQEINLTTYNLCRINMFLHDVNF-----SN 304

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++      + F   +SNPP+  KW       + +       RF P   L  
Sbjct: 305 FDIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVG-----KDDIALINDPRFAPAGVLAP 359

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L       G AAIV     L+ G A   E +IRR+L+EN+ + A+
Sbjct: 360 KSKADLAFTMHMLHWLAED----GTAAIVEFPGVLYRGGA---EGKIRRYLVENNFVHAV 412

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T IAT + +L   + +     V  ++A+        EG K R +  + ++
Sbjct: 413 IQLPPDLFFGTTIATCIIVLKKARPDHS---VLFVDASAECV---REGNKNR-LTAENQQ 465

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +IL +   R+       L    
Sbjct: 466 RILSLVSERQAVDHVAALVSID 487


>gi|238923778|ref|YP_002937294.1| type I restriction-modification system, M subunit [Eubacterium
           rectale ATCC 33656]
 gi|238875453|gb|ACR75160.1| type I restriction-modification system, M subunit [Eubacterium
           rectale ATCC 33656]
          Length = 544

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/555 (20%), Positives = 209/555 (37%), Gaps = 73/555 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
            +       L   IW  A++L G     DF   +L     R +   L         E   
Sbjct: 27  NKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLTAYVNVGEIEAGN 86

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFS 108
           +      +    +    E  V+  G+ F   SE      +      N    LE       
Sbjct: 87  TDFDYAKMKDADAEEAREGLVQEKGF-FILPSELFCNVRVRAAEDNNLNETLEKVFRHIE 145

Query: 109 DNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
           ++AK          +F+D+D +S   +L     ++   L K+    + + L         
Sbjct: 146 ESAKGSQSENSFAGLFDDYDVNS--NKLGSTVAKRNERLVKLLDGIASMNLGSVKDHDID 203

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP 
Sbjct: 204 AFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKKTVNK--------VYDPA 255

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L  A   +                GQE+   T+ +C   M +  +  D      
Sbjct: 256 CGSGSLLLKAEKVLGKDSVKIG------FFGQEINITTYNLCRINMFLHDIGFDKF---- 305

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I+   TL+       + F   +SNPP+  KWE D + +          RF P   L  
Sbjct: 306 -DIECEDTLTNPQHWDDEPFELIVSNPPYSIKWEGDDNPL-----LINDPRFSPAGVLAP 359

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ I+ +
Sbjct: 360 KSKADLAFIMHSLSWL----AANGTAAIVCFPGIMYRGGA---EKKIRQYLIDNNFIDCV 412

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP++LFF T+IAT + ++   KT+        I+A++    + N       +  +   
Sbjct: 413 IQLPSNLFFGTSIATCIMVMKKNKTDNNT---LFIDASNECVKVTN----NNKLTKENID 465

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I+D++ +R   +  S +  Y     +   +     +     +  +  ++ +   +++  
Sbjct: 466 RIVDVFSNRTEEEHLSYLASYEEIKEKEYNLSVSTYVEAEDIREKIDIVKLNAEIKEIVA 525

Query: 510 LHQSFWLDILKPMMQ 524
             Q    +I K + +
Sbjct: 526 REQVLRDEIDKIIAE 540


>gi|309972663|gb|ADO95864.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae
           R2846]
          Length = 514

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 182/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  NN             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGNNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL    F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  
Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K   +    Q I+A+ L+           ++ ++   QIL +
Sbjct: 389 NLFYGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNLLEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|60680613|ref|YP_210757.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis NCTC 9343]
 gi|60492047|emb|CAH06809.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis NCTC 9343]
          Length = 890

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/509 (21%), Positives = 190/509 (37%), Gaps = 87/509 (17%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W++   L G    + +   +L    L+ +                   
Sbjct: 1   MAIKKTQLYSILWESCNILRGSMDASQYKNYVLTMLFLKYISD----------------- 43

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLES---YIASFSDNAKAIFEDFD 119
               D + F  +    F+N     +  L    N    ++     IA  +     I  + D
Sbjct: 44  KVQSDSDIFFDLPEGCFFN----DIVALKGKPNIGEEIQKKLHVIARANPRLDHIINEAD 99

Query: 120 FSSTIAR---LEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEG 173
           F  +        K   L  +   F    L         D ++ + YE+L++ F +E  + 
Sbjct: 100 FDDSTKLGTGKAKVDTLTSLISVFQRDFLDFSKNRAGDDDLIGDAYEYLMKNFAAESGKK 159

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP +V  L   L+    D           ++YDPTCG+G  L      +     +
Sbjct: 160 KGQFYTPAEVSRLMARLIGIHKDNR------PQISIYDPTCGSGSLL------LRAAAEY 207

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
            K    +   GQEL+  T  + V  M +   +          ++ G T+ K  F      
Sbjct: 208 TKHRDGVSIFGQELDGATRGMAVMNMYLHGYD-------DPELEVGDTIEKPFFKSTPNQ 260

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHK-NGELGRFG-----PGLPKISDGSMLFLMHL 342
            + F+Y ++NPPF +K       ++ E K N   GR+G     P +P I      FL+H+
Sbjct: 261 LETFNYVVANPPFSQKGW-----IKGEIKINDTFGRWGNSDNLPPIPPIGYEDYAFLLHI 315

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              +       GR A +L +  LF G     E  +RR ++E   I  I++LPT+LFF T 
Sbjct: 316 IKSINSQ----GRGACILPNGVLFRGNE---EEAVRRKIIEKRYIRGIISLPTNLFFGTG 368

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-- 460
           I   + I+   KT   +G + +I+A   +T    +G K R + +   R++ D + + E  
Sbjct: 369 IPACIVIIDKAKTSTSKG-IFMIDARSGFT---KDGAKNR-LREQDIRRVFDAWEALENL 423

Query: 461 -------NGKFSRMLDYRTFGYRRIKVLR 482
                  + + +     R   Y  I   R
Sbjct: 424 EANGNLDDKEETIPHYARFVPYTEITNER 452


>gi|145637382|ref|ZP_01793042.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittHH]
 gi|145269474|gb|EDK09417.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittHH]
          Length = 514

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 111/489 (22%), Positives = 185/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  +N             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ ++A++AL  
Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|317481426|ref|ZP_07940493.1| N-6 DNA methylase [Bacteroides sp. 4_1_36]
 gi|316902411|gb|EFV24298.1| N-6 DNA methylase [Bacteroides sp. 4_1_36]
          Length = 517

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/558 (19%), Positives = 211/558 (37%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E   +       
Sbjct: 1   MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEAYANNALVDDE 58

Query: 61  ---------AFGGSNIDLESFVKV--AGYSFYNTSEYSLSTL-----GSTNTRNNLESYI 104
                        +    E   K    G  ++    Y  S++        N    LE  +
Sbjct: 59  VSFKELWTMEDEDAAELQEELKKQCLEGVGYFIEPTYLFSSVIDRIKKKENILPILERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+       EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGHDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIKFGVEASEE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMIGQFAAGAGKKAGEFYTPQEVSQILAEIVSIGHA--------RLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A                   +GQE  P T+ +    ML+  ++      
Sbjct: 231 PTCGSGSLLLRAAKVGHAVD----------IYGQEKNPTTYNLARMNMLLHGIKF----- 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI
Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + ++  +K  +    +  I+A+  +  ++     +  +     +
Sbjct: 384 IGLPANIFYGTSIPTCILVM--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPQHIQ 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y  RE  + +S +   +        +  P R     ++     ++A ++  K   
Sbjct: 438 KIVETYRDREEIEKYSHLATLQEVADNDYNLNIP-RYVDTFEEEEPIDIKAVMSEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     +   ++++ 
Sbjct: 497 AKRAELDKEIDVYLKELG 514


>gi|329948021|ref|ZP_08294922.1| type I restriction-modification system, M subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
 gi|328523160|gb|EGF50261.1| type I restriction-modification system, M subunit [Actinomyces sp.
           oral taxon 170 str. F0386]
          Length = 519

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/496 (21%), Positives = 185/496 (37%), Gaps = 76/496 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T    +L   IW+ A DL G     DF   +L F   R +    E     +     
Sbjct: 1   MSKETE-RDALHRAIWRVANDLRGSVDGWDFKAYVLGFLFYRFIS---ENLTEYINAGER 56

Query: 61  AFGGSNIDLESFVKV----------AGYSFYNTSEYSLSTLGSTNTRN-NLESYIA---- 105
             G  + D                     F+         +     R+ NL   ++    
Sbjct: 57  EAGDPDFDYRFLSHADAEGARDGIIEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFK 116

Query: 106 ---------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151
                        + + +F+D D +ST  +L     ++   L ++ +    ++L      
Sbjct: 117 SIEASATGTGSESDLRGLFDDVDVNST--KLGRTVAQRNDKLTRLMQAIGDLDLSYGESS 174

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE L+  + S   +   +F TP+++  +   + +    ++          +YD
Sbjct: 175 IDTFGDAYEFLMTMYASNAGKSGGEFFTPQEISEVLARITVMGKKSVN--------RVYD 226

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L      +       K        GQE+   T+ +C   M +  +       
Sbjct: 227 PACGSGSLLLKFAKVL------GKENVRGGFFGQEINLTTYNLCRINMFLHDINF----- 275

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL+       + F   +SNPP+  KW    D            RF P   L
Sbjct: 276 ADFSIVHGDTLTDPAHWDDEPFEAIVSNPPYSTKWIGKDDPA-----LVNDPRFSPAGVL 330

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+ + L +     G AAIV     LF G A   E++IR++L+EN+ ++
Sbjct: 331 APKSRADLAFTMHMLSWLAVD----GTAAIVEFPGVLFRGAA---EAKIRQYLVENNYVD 383

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP DLFF T IAT + +L   K +     V  ++A+  +     EG K   ++ + 
Sbjct: 384 AVIQLPPDLFFGTQIATCIIVLKKSKQDNS---VLFVDASKQFV---REGNK-NKLSAEN 436

Query: 449 RRQILDIYVSRENGKF 464
           +  IL     R +   
Sbjct: 437 QEMILKTLAKRADVDH 452


>gi|160946887|ref|ZP_02094090.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270]
 gi|158447271|gb|EDP24266.1| hypothetical protein PEPMIC_00848 [Parvimonas micra ATCC 33270]
          Length = 526

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 124/560 (22%), Positives = 213/560 (38%), Gaps = 77/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKY 59
              T   A L   IW  A+D+ G     DF + IL     R +   L     ++      
Sbjct: 8   NNETAQRAELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISENLRDYFDKNEHLAGD 67

Query: 60  LAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNT-RNNLESYI-ASFS--- 108
             F  ++I  +   +      +    F+         + +      NL + +   FS   
Sbjct: 68  PNFKYADISDDEAKRDFKSGTIEEKGFFILPSQLFENVVANAKDNENLNTELANIFSDIE 127

Query: 109 ---------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153
                    D+ K +FED D  +T  RL     EK   L  I    + I           
Sbjct: 128 KSAIGAESEDDIKGLFEDVD--TTSNRLGGTVAEKNKRLRDILTGIAQINFENFKDNHID 185

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+LI  + S   +   +F TP+ V  L   +++D  +         I  +YDPT
Sbjct: 186 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARIVMDGKE--------KINKVYDPT 237

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L        D              GQE+      +    M +  +  +     +
Sbjct: 238 CGSGSLLLQMKKQFDDHIIEEG------FFGQEINMTNFNLARMNMFLHNVNYN-----N 286

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G TL   L   ++ F   +SNPP+  KW  + D            RF P   L  
Sbjct: 287 FSIKRGDTLLNPLHNDEKPFDAIVSNPPYSIKWIGEADPT-----LINDVRFAPAGKLAP 341

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F+MH  + L    +  GRAAIV      +   A   E  IR++L++N+ I+ +
Sbjct: 342 KSYADYAFIMHSLSYL----SSNGRAAIVCFPGIFYRKGA---ERTIRKYLIDNNFIDCV 394

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T+IAT + +++  KTE    KV  I+A+  +    N      I+ +    
Sbjct: 395 IQLPENLFFGTSIATCVLVIAKNKTE---NKVLFIDASKEFKKETN----NNILEEKNIS 447

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWR 505
            I++ + +R + ++ SR +           +     +     +  +       E + T +
Sbjct: 448 AIVEEFRNRTDKEYFSRYVYRTEIEENDYNLSVSTYVEKEDTREVIDIKVLNKEIEETVK 507

Query: 506 KLSPLHQSFWLDILKPMMQQ 525
           K+  L +S   +I+K +  +
Sbjct: 508 KIDEL-RSSINEIVKELEDE 526


>gi|225871247|ref|YP_002747194.1| type I restriction-modification system M protein [Streptococcus
           equi subsp. equi 4047]
 gi|225700651|emb|CAW95219.1| type I restriction-modification system M protein [Streptococcus
           equi subsp. equi 4047]
          Length = 514

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 188/490 (38%), Gaps = 65/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52
           M+E       L   IW  A+D+ G     DF + IL     R +            +   
Sbjct: 1   MSE-QAQRQELHRKIWAIADDVRGAVDGWDFKQYILGILFYRFISENFKTYIEGGEDFNY 59

Query: 53  SAVREKY--LAFGGSNIDLESFVKVAGYSFYNT-----SEYSLSTLGSTNTRNNLESYIA 105
             + ++          I  + +  +    F N      S  +L+T    +  + +E+   
Sbjct: 60  EEIPDEVITPEVKDDAIKTKGYFIMPAQLFSNVVKTARSNDNLNT-ELKDIFDAIEASAM 118

Query: 106 SFSD--NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
            ++   + K +F+D D  S   +L     E+   L  I +  + ++          +  +
Sbjct: 119 GYASENDIKGLFDDVDTRS--NKLGSTVPERNERLALILEGIASLDFGSFEDNHIDLFGD 176

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + S   +   +F TP+ V  L   +++   D   K +      +YDP CG+G
Sbjct: 177 AYEFLISNYASNAGKSGGEFFTPQSVSRLLARIVMLGKDEKNKIN-----KIYDPACGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +             +GQE+   T+ +    M +  +  D        I+
Sbjct: 232 SLLLQAKKQFTEHIIEDG------FYGQEINMTTYNLARMNMFLHNINYDKFS-----IE 280

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
           +G+TL        + F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 281 RGNTLLDPKHGNDKPFDAIVSNPPYSIKWVGSDDPT-----LINDDRFAPAGILAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F+MH  + L       GRAAIV      + G A   E +IR++L++ + +E ++ LP
Sbjct: 336 DFAFIMHSLSYLSNK----GRAAIVTFPGIFYRGGA---EQKIRQYLVDGNFVETVIQLP 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +L F T+IAT + IL+  K       V  I+A+  +    N      ++ ++   +IL 
Sbjct: 389 DNLLFGTSIATCILILAKNKP---TTDVLFIDASQQFKKETN----NNVLTEENIEKILK 441

Query: 455 IYVSRENGKF 464
               + N ++
Sbjct: 442 SVEHKNNEEY 451


>gi|313123730|ref|YP_004033989.1| hsdm-type i modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280293|gb|ADQ61012.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 532

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/487 (22%), Positives = 191/487 (39%), Gaps = 74/487 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50
           M E   + + L + ++  A+ L       ++   +L     + L       L        
Sbjct: 1   MVEENSTVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 51  -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASF 107
            T    ++ Y         LE      GY      EY+ + + +        L     +F
Sbjct: 60  ITLDEAQKIYEESLEEEDLLEEVKDELGYL--IEPEYTYTKILNNANDGSFQLNQLGDAF 117

Query: 108 SD------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMS 156
           +       + + +F+D+D  S   RL +        +  + K    +EL     P   + 
Sbjct: 118 NKLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVLKAIGKLELV--KTPGDTLG 173

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F SE  + A +F TP+++  L   L L   D           ++YDP  G+
Sbjct: 174 DAYEYLISQFASESGKKAGEFYTPQEISELLARLTLVGKD------YSSGMSVYDPAMGS 227

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L +   +V +          +  +GQE+   T  +    M++  ++       ++ +
Sbjct: 228 GSLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKL 275

Query: 277 QQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKIS 332
           + G TL +D    +   F   + NPP+  KW  DK  ++         RF   G LP  S
Sbjct: 276 RNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKS 328

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ 
Sbjct: 329 KADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIG 381

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LF+ T I T + +L   K +     V  I+A+  +  ++     +  +  +   +I
Sbjct: 382 LPANLFYSTGIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKI 434

Query: 453 LDIYVSR 459
           L  Y  R
Sbjct: 435 LKTYEER 441


>gi|296119614|ref|ZP_06838172.1| type I restriction-modification system, M subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967497|gb|EFG80764.1| type I restriction-modification system, M subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 518

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 116/503 (23%), Positives = 195/503 (38%), Gaps = 73/503 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-- 58
           M E     A L   IW+ A DL G     DF   +L     R +   L    + +  +  
Sbjct: 1   MKE--AQRAELHKTIWRIANDLRGSVDGWDFKSYVLGLLFYRFISENLTEYLNRLEHEAG 58

Query: 59  -----YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNA- 111
                Y      + +      V+   F+         + +   T  NL   + +   N  
Sbjct: 59  ETEFNYAELNDEDAEFGREWTVSDKGFFILPSELFVNVRARAKTDENLNEKLEAVFKNIE 118

Query: 112 ------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
                       K +F+D D +ST  RL     ++   L K+ +    + L         
Sbjct: 119 GSAVGTDSEDDLKGLFDDLDVNST--RLGNSVAKRNATLVKLLEAIGDLPLGDWSDNTID 176

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  + YE+L+  + S   +   ++ TP++V  L T + +    ++ K        +YDP 
Sbjct: 177 VFGDAYEYLMGMYASSAGKSGGEYYTPQEVSELLTRITVVGKTSVNK--------VYDPA 228

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +       K        GQE+   T+ +    M +  +         
Sbjct: 229 VGSGSLLLKFEKVL------GKGGVRNGYFGQEINLTTYNLARINMFLHNVN-----YAD 277

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NI  G TL+       + F   +SNPP+  KWE D + V          R+ P   L  
Sbjct: 278 FNIALGDTLTDPKHWDDEPFEAIVSNPPYSIKWEGDANPV-----LINDPRYSPAGVLAP 332

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L +     G AAIV     L+   A   E +IR++L++N+ I+AI
Sbjct: 333 KSKADLAFAMHILSWLAV----NGTAAIVSFPGVLYRAGA---EKKIRKYLIDNNYIDAI 385

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T I T + +L   K +     V  I+A++ +      G K   + ++ + 
Sbjct: 386 IQLPPDLFFGTTIGTCIMVLKKSKKDNS---VLFIDASEQFV---RSGNK-NKLAEENQA 438

Query: 451 QILDIYVSRENGK-FSRMLDYRT 472
            ILD ++ RE+   F+ ++    
Sbjct: 439 TILDAFIDREDVDHFAELVPNEE 461


>gi|288929352|ref|ZP_06423197.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288329454|gb|EFC68040.1| type I restriction-modification system, M subunit [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 517

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/559 (20%), Positives = 216/559 (38%), Gaps = 76/559 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------SA 54
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E           
Sbjct: 1   MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANEALVDDE 58

Query: 55  VREKYLAFGGSNIDLESFVKV------AGYSFYNTSEYSLSTL-----GSTNTRNNLESY 103
           V  K L    ++ D+ES  +           ++    +  S++        N    LE  
Sbjct: 59  VTFKELWAMENDDDIESLQQEVKTECLENIGYFIEPHFLFSSIIEKIKKKENILPILERS 118

Query: 104 IASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151
           +    D+   +   EDF     D      +L     +K  L+  +      I+   +   
Sbjct: 119 LKRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQ 178

Query: 152 DRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           +  +  + YE++I +F +   + A +F TP++V H+   ++              +R +Y
Sbjct: 179 EIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSHILAEIVTLGHA--------RLRNVY 230

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L  A N                  GQE  P T+ +    ML+  ++     
Sbjct: 231 DPTCGSGSLLLRAANIGHAN----------EIFGQEKNPTTYNLARMNMLLHGIKF---- 276

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +  I+ G TL  D F   +F   ++NPPF  +W   +     +  +   GR    L  
Sbjct: 277 -SNFRIENGDTLEADAFGDTQFDAVVANPPFSAEWSAAEKFNNDDRFSKI-GR----LAP 330

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389
                  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++A
Sbjct: 331 RKTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDA 383

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP ++F+ T+I T + +   +K  +    +  I+A+  +  ++     +  +     
Sbjct: 384 IIGLPANIFYGTSIPTCILVF--KKCRKEDENILFIDASKEFEKVKT----QNKLRPQHI 437

Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++I+D Y  R+  + +S +            +  P R     ++     ++A +   K  
Sbjct: 438 QKIVDTYRDRKEIEKYSHLATLEEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKEL 496

Query: 509 PLHQSFWLDILKPMMQQIY 527
              ++     ++  ++++ 
Sbjct: 497 ETKRAELDKEIEVYLKELG 515


>gi|208434761|ref|YP_002266427.1| type I restriction enzyme M protein [Helicobacter pylori G27]
 gi|208432690|gb|ACI27561.1| type I restriction enzyme M protein [Helicobacter pylori G27]
          Length = 531

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/530 (22%), Positives = 199/530 (37%), Gaps = 70/530 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVR---------- 56
             L N IWK A +L G     DF + +L     R +   +     +   +          
Sbjct: 23  NELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTDYINKEERKRDPSFDYALL 82

Query: 57  --EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------ 108
             E+        I+ + F       F N  + + S      T  N+ + I   S      
Sbjct: 83  SDEEAERAREHLIEEKGFFIPPSALFCNALKNAPSNEDLNVTLQNIFTEIEKSSLGTPSE 142

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIR 164
           +N K +F D D +S     +   +   L KI +   G++L         V  + YE+L+ 
Sbjct: 143 ENVKGLFADLDVNSNKLGSSHKIRVEKLTKILQAIGGMQLGDYLKSGIDVFGDAYEYLMA 202

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L    
Sbjct: 203 MYASNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLLLQFS 254

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + D              GQE+   T+ +C   M +  +          +I  G TL  
Sbjct: 255 KVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YTKFHIALGDTLLD 303

Query: 285 DLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   +SNPP+  KW  D   +    K+ E  R    L   +   + F MH+ 
Sbjct: 304 PKHEDDEPFDAIVSNPPYSTKWVGDNSPLL---KDDERFRKAGVLAPKNAADLAFTMHML 360

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L       G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +LFF T+I
Sbjct: 361 SYLSNQ----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFFGTSI 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           AT + +L   K ++       I+A+  +        K+  +    R +IL  Y+ R+  K
Sbjct: 414 ATCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKAHNREKILQTYIERKEVK 466

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
               L           + +     + L        E       +  L+  
Sbjct: 467 HFCALAN---------IEKIKENDYNLSVNRYVEQEDTKEAIDIKALNSE 507


>gi|319898180|ref|YP_004136377.1| type i restriction-modification system methyltransferase subunit
           [Haemophilus influenzae F3031]
 gi|317433686|emb|CBY82073.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3031]
          Length = 514

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 184/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  +N             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  
Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|167756438|ref|ZP_02428565.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402]
 gi|167703846|gb|EDS18425.1| hypothetical protein CLORAM_01971 [Clostridium ramosum DSM 1402]
          Length = 516

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 118/531 (22%), Positives = 204/531 (38%), Gaps = 69/531 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------AVREK 58
               A L + IWK A ++ G     DF + +L     R +                  E 
Sbjct: 4   AAQRAELQSQIWKIANEVRGSVDGWDFKQYVLGTLFYRFISENFSNYIEGGDDSINYAEL 63

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD-------- 109
             +     I  ++  K  GY  Y  S+   +   + NT ++L + +A  FS         
Sbjct: 64  DDSIITKEIKEDAI-KTKGYFIY-PSQLFCNIAKNANTNDSLNTDLAKIFSAIESSASGY 121

Query: 110 ----NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIY 159
               + K +F   DF +T  RL     +K   L  + K   G+     +     +  + Y
Sbjct: 122 PSESDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVEGLSFGKFEENQIDLFGDAY 179

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  
Sbjct: 180 EFLISNYAANAGKSGGEFFTPQSVSKLIAKLAMHGQSTINK--------IYDPAAGSGSL 231

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A     +              GQE+   T+ +    M +  +  D       NI  G
Sbjct: 232 LLQAKKQFDEHIIEDG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIALG 280

Query: 280 STLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
           +TL    F  ++ F   +SNPP+   W  + D            RF P   L   S    
Sbjct: 281 NTLLNPQFGDEKPFDAIVSNPPYSIPWIGNSDPT-----LINDVRFAPAGVLAPKSKADF 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L       GRAAIV      + G A   E +IR++L++N+ +EA+++L  +
Sbjct: 336 AFVLHALSYLSSR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVEAVISLAPN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LFF T+IA  + +LS  KTE    K Q I+A+        +     I+ ++    IL+++
Sbjct: 389 LFFGTSIAVNILVLSKHKTE---TKTQFIDASG--EDYFKKETNNNILTEEHINAILELF 443

Query: 457 VSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
            ++++    S+ +D          +     +     +  +  +E +   +K
Sbjct: 444 ANKKDIDHVSKSVDNSEISLENYNLSVSTYVEAKDTREVIDIVELNAKIKK 494


>gi|295107662|emb|CBL05205.1| Type I restriction-modification system methyltransferase subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 526

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 114/500 (22%), Positives = 188/500 (37%), Gaps = 74/500 (14%)

Query: 1   MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-----EPTRS 53
           M   T     A L   IW  A+DL G     DF + IL     R +   L     E    
Sbjct: 1   MANTTKEQQRAELHKTIWSIADDLRGSVDGWDFKQYILCTLFYRFVSENLCTYLAEQEGD 60

Query: 54  AVRE-------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNLESYIA 105
           A  +       +     G  +  + F  +    F N  ++     +  T    +L   ++
Sbjct: 61  ASFDYASMSDDQAEWGRGETVKEKGFFILPSELFCNILKHVDKDGMRLTEDGQDLNELLS 120

Query: 106 SFSDNA-------------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
               N              K +F+D D +S     + +E+   L K+      ++     
Sbjct: 121 QTFKNIEGSAVGTESEGDLKGLFDDMDVNSAKLGNSVIERNKKLVKLISKIGSLDFGGAF 180

Query: 150 VPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +      + YE+L+  + S   +   +F TP++V  L   + +    ++ K       
Sbjct: 181 QDNSIDAFGDAYEYLMTMYASNAGKSGGEFFTPQEVGELLARIAIGDRKSVNK------- 233

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+GG L      +       K        GQE+   T+ +    M +  +  D
Sbjct: 234 -VYDPCCGSGGLLLKFAKIL------GKENVRNGYFGQEINLTTYNLARINMFLHDVNFD 286

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  +I  G TL +      + F   +SNPP+  KWE   + +          RF P
Sbjct: 287 KF-----DIALGDTLKEPAHWDDEPFDAIVSNPPYSIKWEGKANPLNIN-----DARFSP 336

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F MH+ + L       G AAIV     L+ G A   E +IR +L+ N
Sbjct: 337 AGVLAPASKADLAFTMHMLSWLSTE----GTAAIVEFPGVLYRGGA---EGKIRDYLVRN 389

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + +EA++ LP DLFF T IAT + +L   KT      V  I+A++ +    +    +  +
Sbjct: 390 NFVEAVIQLPADLFFGTTIATCIIVLKKNKTAS---DVLFIDASEQFERRDS----KNKL 442

Query: 445 NDDQRRQILDIYVSRENGKF 464
                 +I+    SRE  + 
Sbjct: 443 MPANIERIMAAVSSREEEEH 462


>gi|319775915|ref|YP_004138403.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3047]
 gi|317450506|emb|CBY86723.1| Putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae F3047]
          Length = 514

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 183/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  +N             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFNEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL  
Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNFVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|300813147|ref|ZP_07093523.1| type I restriction-modification system, M subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300495862|gb|EFK31008.1| type I restriction-modification system, M subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 532

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/486 (23%), Positives = 190/486 (39%), Gaps = 72/486 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP------ 50
           M E     + L + ++  A+ L       ++   +L     + L       L        
Sbjct: 1   MAEENSKVS-LQSGLFAAADVLRSKMDANEYKNYLLGTVFYKYLSDQQLYKLAEDAGEDD 59

Query: 51  -TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFS 108
            T    ++ Y         LE      GY       Y+   L + N  +  L     +F+
Sbjct: 60  ITLDEAQKIYEESLEEEDLLEEVKDELGYLIEPEYTYT-KILDNANDGSFQLNQLGDAFN 118

Query: 109 D------NAKAIFEDFDFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSN 157
                  + + +F+D+D  S   RL +        +  + K    +EL     P   + +
Sbjct: 119 KLESQGSSFEGLFDDYDLYSK--RLGQNLQKQTDTIAGVLKAIGKLELV--KTPGDTLGD 174

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI +F SE  + A +F TP++V  L   L L   D           ++YDP  G+G
Sbjct: 175 AYEYLISQFASESGKKAGEFYTPQEVSELLARLTLVGKD------YSSGMSVYDPAMGSG 228

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L +   +V +          +  +GQE+   T  +    M++  ++       ++ ++
Sbjct: 229 SLLLNFRKYVPNSS-------RITYYGQEINTSTFNLARMNMILHHVDL-----ANQKLR 276

Query: 278 QGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LPKISD 333
            G TL +D    +   F   + NPP+  KW  DK  ++         RF   G LP  S 
Sbjct: 277 NGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD-------DPRFSKYGVLPPKSK 329

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L+      G  AIVL    LF G A   E +IR+ LLE   I+A++ L
Sbjct: 330 ADYAFLLHGFYHLKHS----GAMAIVLPHGILFRGAA---EGKIRQKLLEEGAIDAVIGL 382

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T I T + +L   K +     V  I+A+  +  ++     +  +  +   +IL
Sbjct: 383 PANLFYSTGIPTTIVVLKKDKQDRS---VLFIDASKEFEKVKT----QNKLRQEDIDKIL 435

Query: 454 DIYVSR 459
             Y  R
Sbjct: 436 KTYEER 441


>gi|77543208|gb|ABA87020.1| methylation subunit [Vibrio cholerae]
 gi|259156470|gb|ACV96414.1| type I restriction-modification system, M subunit [Vibrio cholerae
           Mex1]
          Length = 524

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 187/494 (37%), Gaps = 69/494 (13%)

Query: 1   MTEFTGSAA----SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------P 50
           MT+   SAA     L   IW  A D+ G     DF + +L     R +            
Sbjct: 1   MTQLQQSAAQQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGD 60

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
                              E  +K  GY  Y  S+   +   + +   NL + +A+    
Sbjct: 61  ESVNYAAMSDDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANAHKNENLNTDLAAIFAA 119

Query: 111 A----------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
                      K I   F DF +T  RL      K   L  + K  +G+     +     
Sbjct: 120 IENSANGYDSEKDIKGLFADFDTTSNRLGNTVEAKNKRLTAVLKGVAGLTFGNFEDNQID 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP 
Sbjct: 180 LFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L  A  H                 GQEL   T+ +    M +  +  D      
Sbjct: 232 AGSGSLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF---- 281

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            NIQ G TL++  F   + F   +SNPP+  KW    D            RF P   L  
Sbjct: 282 -NIQLGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAP 335

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +
Sbjct: 336 KSKADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETV 388

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N      ++ +    
Sbjct: 389 ISLAPNLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNVLTEQHIE 441

Query: 451 QILDIYVSRENGKF 464
            I+ ++ S+EN + 
Sbjct: 442 DIMKVFASKENVEH 455


>gi|319428170|gb|ADV56244.1| type I restriction-modification system, M subunit [Shewanella
           putrefaciens 200]
          Length = 523

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 114/490 (23%), Positives = 181/490 (36%), Gaps = 71/490 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59
              A L   IW  A D+ G     DF + +L     R +    E                
Sbjct: 5   QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFEVYITGGDESVNYTAMD 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----------ASFS 108
            +        +  ++  GY F   S+   +   + +   NL + +             + 
Sbjct: 65  DSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLATIFAAIENSANGYD 123

Query: 109 DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICK-----NFSGIELHPDTVPDRVMSN 157
              K I   F DF +T  RL      K   L  + K      F   E   +     +  +
Sbjct: 124 SE-KDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGD 182

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G
Sbjct: 183 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSG 234

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQEL   T+ +    M +  +  D       NIQ
Sbjct: 235 SLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQ 283

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL +  F   + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 284 LGDTLIEPHFLDDKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 338

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 339 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLIDNNYVETVISLA 391

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  KT+      Q I+A+ L+    N       ++++   QI+ 
Sbjct: 392 PNLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNTLSNEHIEQIVK 444

Query: 455 IYVSRENGKF 464
           ++ S+EN   
Sbjct: 445 VFASKENVDH 454


>gi|260582434|ref|ZP_05850226.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
 gi|260094585|gb|EEW78481.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae NT127]
          Length = 514

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/489 (24%), Positives = 191/489 (39%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTNYIEADDESVN 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS------ 108
           Y       I  E     +K  GY  Y  S+   + + + NT  NL + +   FS      
Sbjct: 61  YAKLPDEIITPEIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNTELKQIFSDIENSA 119

Query: 109 ---DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
               + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 120 TGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFGDFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G 
Sbjct: 180 YEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL  
Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFYGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|317178792|dbj|BAJ56580.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 529

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/580 (21%), Positives = 210/580 (36%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------ 46
           M      A          L N IWK A +L G     DF + +L     R +        
Sbjct: 1   MENKNTQAPKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYI 60

Query: 47  -----ALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                 L P         E+  +     I  + F       F N  +   +      T  
Sbjct: 61  NKQERELNPGFDYASLSDEEAESAKEGLIVEKGFFIPPSALFCNVLKNVPNNGDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFESEENLKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  D + +          RF P 
Sbjct: 284 --YSKFHIALGDTLLDPKHKDDEPFDAIVSNPPYSTKWAGDNNPI-----LINDERFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L       G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGHA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 EHNREKILKTYTERKAIKHFSALAS---------IEKIKENDYNLSVNRFVEQEDTKEII 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L+     +I + + +Q       +  +KE  +   A
Sbjct: 494 DIKALN----SEISQIVQKQSALRNSLDRIIKELEEGQNA 529


>gi|332289039|ref|YP_004419891.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330431935|gb|AEC16994.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 511

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 117/489 (23%), Positives = 193/489 (39%), Gaps = 67/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      + L   IW+ A D+ G     DF + +L     R +        +     Y 
Sbjct: 1   MT-SAQQRSELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFASFFNDEETNYA 59

Query: 61  AFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS-------- 108
                 I  E     +KV GY  Y  S+  ++ + + N+  +L + +   F+        
Sbjct: 60  DLTDDVITNEIKDDVIKVKGYFIY-PSQLFVNIVKNANSNEHLNTDLKNIFNEIEDSAVG 118

Query: 109 ----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNI 158
                + K +F   DF +T  RL     +K   L  + K  + ++  H +     +  + 
Sbjct: 119 YPSEPDIKGLFA--DFDTTSNRLGNTVADKNKRLAAVLKGVAELDFGHFEDNQIDLFGDA 176

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP++V  L   L L     + K        +YDP CG+G 
Sbjct: 177 YEFLISNYAANAGKSGGEFFTPQNVSKLIARLALHGQSTVNK--------IYDPACGSGS 228

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A                    GQE+   T+ +    M +  +  D       NI  
Sbjct: 229 LLLQAKKQFDAHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FNISL 277

Query: 279 GSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL    F + K F   +SNPP+  KW    D            RF     L   S   
Sbjct: 278 GDTLLNPQFGSDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFASAGVLAPKSKAD 332

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ IE ++AL  
Sbjct: 333 FAFILHTLSYL----SAKGRAAIVTFPGIFYRGGA---EQKIRKYLVDNNFIETVIALAP 385

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  KT+      Q I+A +L+    N      ++ D+   +I+ +
Sbjct: 386 NLFFGTSIAVNILVLSKHKTDMMT---QFIDAGELFKKETN----NNVLTDEHITKIIQL 438

Query: 456 YVSRENGKF 464
           +  + +   
Sbjct: 439 FSEKTDVPH 447


>gi|229606285|ref|YP_002876933.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229607599|ref|YP_002878247.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229607706|ref|YP_002878354.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229608128|ref|YP_002878776.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229368940|gb|ACQ59363.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370254|gb|ACQ60677.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370361|gb|ACQ60784.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
 gi|229370783|gb|ACQ61206.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae MJ-1236]
          Length = 530

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 198/568 (34%), Gaps = 66/568 (11%)

Query: 1   MTEFTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M +   +  +  +F   +W  A  L G  + +++  ++L    L+ +    E  R  + +
Sbjct: 6   MAKKPAAKKNEKSFEETLWDAANKLRGSVESSEYKHIVLSLIFLKFISDTFEKQRQKLID 65

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNT--SEYSL--STLGSTNTRNNLESY---IASFSDN 110
             L      +            FY    S +S         +    +++    I   +  
Sbjct: 66  AGLEKHIDMVPA----YTKDNVFYLPEESRWSFIQKNAKQEDIALKIDTALSTIEKTNKA 121

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +    D  FS     + K   L  +  N   +    +     V+  +YE+ + +F    
Sbjct: 122 LQGALPDNYFSRLGLDVSKLAALIDVINNIDTLANPHE----DVVGRVYEYFLSKFAIAE 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G  +F TP+ +V+L   L+                 +YDP CG+GG    +M  + + 
Sbjct: 178 GKGKGEFYTPKSIVNLIAELI-----------EPYKGKIYDPCCGSGGMFVQSMKFIENH 226

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +      +  +GQE    T+ +    + IR + ++             T + D     
Sbjct: 227 KGN---KKDISVYGQEYTGATYKLAKMNLAIRGISANLGAAAK------DTFANDQHETL 277

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +  + ++NPPF +K  +  D +  +H+       G   P  S+ +  +++H+ +KL    
Sbjct: 278 KADFIMANPPFNQKDWRASDELVDDHRWD-----GYETPPTSNANYGWILHMVSKL---- 328

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           +  G A  +LS+  L        E EIR+ L+EN+L+EAI+ LP ++F+ T+I+  LWIL
Sbjct: 329 SENGVAGFILSNGALSGDGT---EKEIRKKLIENNLVEAIILLPRNMFYTTDISVTLWIL 385

Query: 411 SNRKTE-------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           +  K               +R  ++  ++             K    ++   +++ D   
Sbjct: 386 NKNKKAHTVPHEDVTRNYRDREEEILFMDLRQRGEPFEK---KFIQFSEQDIKELADTLH 442

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           + +                           + L  +                   +    
Sbjct: 443 TWQQVGAEDKYKDIAEYCYSATKEEIATKDYSLVPSKYIEFTNRDENINFDEKMSNLKEQ 502

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEA 545
             + + Q+        +  KE     + 
Sbjct: 503 FSQLLAQEEKSKNELLNVFKELGYEIKL 530


>gi|323344377|ref|ZP_08084602.1| type I restriction-modification system [Prevotella oralis ATCC
           33269]
 gi|323094504|gb|EFZ37080.1| type I restriction-modification system [Prevotella oralis ATCC
           33269]
          Length = 542

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/588 (20%), Positives = 204/588 (34%), Gaps = 96/588 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL-EPTRSAVREKYLAF 62
            T +   L   +W  A  L G     DF   +L F  L+ L     E  +  +   Y   
Sbjct: 2   TTENKNELGKTLWDIANSLRGAMMADDFRDYMLSFLFLKYLSDNYVEFAKKELGTDYPDI 61

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLS----------------TLGSTNTRNNLE----- 101
                +    VK     +Y  +   +                      N   N       
Sbjct: 62  KNIVKEETGIVKSPLQIWYAANPEDIDLFEAQMRKKIHYVIKPKYLWDNIAENARTQSNE 121

Query: 102 ---------SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL 145
                     YI   SF  + K +F + + +S   +L     E+  LL K+         
Sbjct: 122 LLKILEEGFKYIEEQSFETSFKGLFSEINLNS--EKLGKNYAERNALLAKVINKIKEGVS 179

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +T     + + YE+LI +F +   + A +F TP+ +  + + ++              
Sbjct: 180 KLNTTT-DTLGDAYEYLIGQFAANSGQKAGEFYTPQGISSILSKIVTLDCQDPKSGKKKK 238

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           I  + D TCG+G  L +                I   +GQE    T+ +    ML+    
Sbjct: 239 ISKVLDFTCGSGSLLLNVR-------HEMGANGIGKIYGQEKNITTYNLARMNMLLH--- 288

Query: 266 SDPRRDLSKNIQQGSTLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               +D    I  G TL  D              F   ++NPPF  +WE  +       +
Sbjct: 289 --EVKDTEFEIHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEPKE-------E 339

Query: 318 NGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             +  RF   GL   S     FL+H  + L    +G G  AI+L    LF G     E  
Sbjct: 340 TAKDFRFSRYGLAPKSAADFAFLLHGFHYL----SGDGTMAIILPHGVLFRGGK---EET 392

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ LL +D I+A++ LP +LF+ T I   + +L   K   R   +  INA+      + 
Sbjct: 393 IRKKLLSDDNIDAVIGLPANLFYSTGIPVCILVL---KKCRRTDDILFINASSEEHYEK- 448

Query: 437 EGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            GK++  +  +   +I++ Y  R E  +++          R++ +       + L+ +  
Sbjct: 449 -GKRQNSLRPEDINKIVETYQFRIEENRYA----------RKVYMREIKDNGYNLNISRY 497

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
             L  +     L+ +H+       K    +         F+KE     
Sbjct: 498 VNLSKEEEKIDLAEVHRQLVATEEKIEEARQKH----NEFLKELGLDL 541


>gi|148827354|ref|YP_001292107.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittGG]
 gi|148718596|gb|ABQ99723.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittGG]
          Length = 514

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 184/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  +N             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNLAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  
Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +++   
Sbjct: 442 FADKQDVPH 450


>gi|241895015|ref|ZP_04782311.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Weissella paramesenteroides ATCC 33313]
 gi|241871733|gb|EER75484.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Weissella paramesenteroides ATCC 33313]
          Length = 533

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/478 (21%), Positives = 180/478 (37%), Gaps = 70/478 (14%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGG 64
            IWK   +  G  + +++   I      + L    +          T   V ++      
Sbjct: 10  LIWKTLNETRGKIEPSEYKNYIFGLMFYKFLSEKAQSWLNTQLRGETWENVWQQNPEKAA 69

Query: 65  SNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------AIF 115
           S +  +  +V   G  F   S++  +         N+   +  F+   +         IF
Sbjct: 70  SFMQSKLGYVIQPGDMF---SDWQAAINIDQFNITNVADSLTHFNQGIQQGAKGTFEGIF 126

Query: 116 EDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +D D +S  +RL          +    S I+         V+ ++YE+LI  F +     
Sbjct: 127 DDMDLAS--SRLGSNTQTRTKTLMDWISLIDQIELDESSDVLGDLYEYLIGMFAANSGAK 184

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TP +V  +   +L    + + +       +LYDP  G+G  L    +++     +
Sbjct: 185 AGEFYTPHEVSDIMARILTAGREDMAE------YSLYDPALGSGSLLLTTASYMH----N 234

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
             +   +  +GQE+   T+ +    +++  +E +       +I    TL+ D   G    
Sbjct: 235 DGVRGAIKYYGQEVITTTYNLARINLMMHGVEYNDI-----HIHNADTLNMDWPDGVVEG 289

Query: 290 ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               + F   ++NPP+  KW              +  RF  G+   S     FL H    
Sbjct: 290 VDSPRMFDAVMANPPYSLKW--------DNTNREDDPRFKSGIAPKSKADFAFLQHCLYH 341

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      GR AIVL    LF G A   E  IR+ LLEN  I A++ LP  +F  T I T
Sbjct: 342 LKQD----GRMAIVLPHGVLFRGAA---EGRIRKQLLENHNISAVIGLPEKIFTNTGIPT 394

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            + +L   +T      V  I+A+  +   +N       +       I++ ++ RE+  
Sbjct: 395 IIMVLEKNRTS---DDVLFIDASKGFEKQKN----NNKLRAQDIDLIVETFLKREDAD 445


>gi|307637539|gb|ADN79989.1| typeI restriction-modification system DNA-methyltransferase subunit
           M [Helicobacter pylori 908]
 gi|325996129|gb|ADZ51534.1| Type I restriction-modification system/DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
          Length = 581

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 122/567 (21%), Positives = 206/567 (36%), Gaps = 80/567 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
              +     L N IWK A +L G     DF + +L     R +   +    +        
Sbjct: 64  NHASLERNELHNTIWKVANELRGSVDGWDFKQYVLGVLFYRYISENIARYHNEYMRNNNF 123

Query: 57  -----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                      E+      S I+ + F       F N  + + +      T  N+ + I 
Sbjct: 124 DPSFDYASLSDEEAEIERKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFTEIE 183

Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
             S      +N K +F D D +S     +   +   L KI +   G++L         V 
Sbjct: 184 KSSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVF 243

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   ++ TP++V  L   + L   + + K        +YDP CG
Sbjct: 244 GDAYEYLMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCG 295

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      + D              GQE+   T+ +C   M +  +          +
Sbjct: 296 SGSLLLQFSKVLGDKNVLKG------YFGQEINLTTYNLCHINMFLHDIN-----YSKFH 344

Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL        + F   +SNPP+  KW  D + +          RF     L   +
Sbjct: 345 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMN-----DERFSKAGALAPKN 399

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   E +IR +L++ + I+ ++A
Sbjct: 400 AADLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIA 452

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF TNIAT + +L   K ++       I+A+  +        K+  +    R +I
Sbjct: 453 LPENLFFGTNIATCILVLKRNKKDDTT---LFIDASKEFVKE----GKKNKLKAHNREKI 505

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           L  Y  R+  K    L           + +     + L        E       +  L  
Sbjct: 506 LQTYTERKAIKHFSALAN---------IEKIQENDYNLSVNRYVEQEDTKEIIDIKAL-- 554

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKES 539
              ++I + + +Q       ES +KE 
Sbjct: 555 --QIEISQIVKKQSALRNSLESIIKEL 579


>gi|172040945|ref|YP_001800659.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171852249|emb|CAQ05225.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 865

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 115/589 (19%), Positives = 225/589 (38%), Gaps = 67/589 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE----PTRSAVREKYLAF 62
           +   LA+ IW++A ++    +  ++   IL F   + L   +E       +   +   A 
Sbjct: 2   NKQELASRIWESANNMRSKIEANEYKDYILGFIFYKFLSDQVEQFMLDNDAEPEDLPDAL 61

Query: 63  GGSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNA----KAIFE 116
             ++ D  + V+     F  Y     +    G+  +  ++   +A+F  N     K +F+
Sbjct: 62  VETDTDTVALVRNNLGYFLTYENLYSTWRDKGNDFSIAHVREGLATFKRNIAPERKHVFD 121

Query: 117 DF--DFSSTIARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                  +++++L          + K+      I          V+  IYE+LI +F + 
Sbjct: 122 GILNTLDTSLSKLGTTDAARTAAIKKLLDLIDDIPTDGKQGY-DVLGYIYEYLIEKFAAN 180

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  + + ++ D      +        +YDPT G+G  L +    VA 
Sbjct: 181 AGKKAGEFYTPHEVSLVMSNIVADHLKGRDEIQ------IYDPTSGSGSLLLNIGQAVAK 234

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--- 286
                  P  +    QEL   T+ +    +++R +++D         + G +L+ D    
Sbjct: 235 RMGD---PDRIKYFAQELRENTYNLTRMNLVMRGVKADNIVA-----RNGDSLAHDWPMF 286

Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSML 337
                   +        +SNPP+ +KWE +         NG   RF    L   +     
Sbjct: 287 DESDPVQTYQPLYVDAVVSNPPYSQKWEPEG--------NGADPRFARFALAPKTKADYA 338

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    ++      G   IVL    LF G     E++IRR L+E + I+A++ LP+++
Sbjct: 339 FLLHELFHVKPD----GILTIVLPHGVLFRGG---SEADIRRNLIEANHIDAVIGLPSNI 391

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T IAT + +L   K E  R  V  I+A+  +     +G K   +     ++I+D   
Sbjct: 392 FYGTGIATIIMVL---KQERDRDDVLFIDASQGFI---KQG-KYNHLRARDIQRIVDAVH 444

Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +R +   F++++           +  P  +S  L    +            S +      
Sbjct: 445 NRVDVPHFAKVVTRDEIRANDHNLNIPRYVSATLPPEAVDLYATMHGGIPTSEISTLEHY 504

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
               P +++      AE + +    +      +  A+++       A  
Sbjct: 505 WTALPGLREALFTEKAEGYAELKTTNLRETINQHPAAQALRNQVDAALS 553


>gi|150006176|ref|YP_001300920.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|149934600|gb|ABR41298.1| type I restriction enzyme EcoR124II M protein [Bacteroides vulgatus
           ATCC 8482]
          Length = 517

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 214/558 (38%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E           
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +   + D     + A         ++   ++  S++        N    LE  +
Sbjct: 59  ITFKELWKMDDADAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAIKRKENILPMLERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A N                 +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAANIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +   +K  +    +  I+A+  +  ++     +  + +   +
Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y  R+  + +S +   +        +  P R     ++     ++A +   K   
Sbjct: 438 KIVETYRDRKEIEKYSHLASLQEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     ++  ++++ 
Sbjct: 497 AKRAELNKEIEVYLKELG 514


>gi|254670657|emb|CBA06718.1| type I restriction enzyme EcoR124II M protein [Neisseria
           meningitidis alpha153]
          Length = 512

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 185/487 (37%), Gaps = 68/487 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL----- 60
              A L   IWK A+++ G     DF + +L     R +         A           
Sbjct: 2   QQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSIDYAAMP 61

Query: 61  ------AFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFS----- 108
                       + ++ +    G  F N + E   +   +T  +    +  +S S     
Sbjct: 62  DSIITPEIKDDAVKVKGYFIYPGQLFCNIAAEAHQNEELNTKLKEIFTAIESSASGYPSE 121

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHL 162
            + K +F+  DF +T +RL     +K   L  + K  + ++    +     +  + YE+L
Sbjct: 122 QDIKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGSFEDHHIDLFGDAYEYL 179

Query: 163 IRRFGSEVSEGAEDFMTPRDVV--HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           I  + +   +   +F TP+ V    L   L +   + + K        +YDP CG+G  L
Sbjct: 180 ISNYAANAGKSGGEFFTPQSVSVSKLIARLAVHGQEKVNK--------IYDPACGSGSLL 231

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     +              GQE+   T+ +    M +  +  +       +I+ G 
Sbjct: 232 LQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELGD 280

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL+       + F   +SNPP+   W    D            RF P   L   S     
Sbjct: 281 TLTNPKLKDSKPFDAVVSNPPYSINWIGSGDPT-----LINDDRFAPAGVLAPKSKADFA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +L
Sbjct: 336 FILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPNL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++ 
Sbjct: 389 FYGTGIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLFA 441

Query: 458 SRENGKF 464
            + +   
Sbjct: 442 DKADVPH 448


>gi|114563124|ref|YP_750637.1| type I restriction-modification system, M subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|114334417|gb|ABI71799.1| type I restriction-modification system, M subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 523

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 182/490 (37%), Gaps = 71/490 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59
              A L   IW  A D+ G     DF + +L     R +    E                
Sbjct: 5   QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFELYITGGDESVNYAAMD 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----------ASFS 108
            +        +  ++  GY F   S+   +   + +   NL + +             + 
Sbjct: 65  DSDENIIAAKDDAIRTKGY-FILPSQLFSNVAANAHKNENLNTDLATIFAAIENSANGYD 123

Query: 109 DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICK-----NFSGIELHPDTVPDRVMSN 157
              K I   F DF +T  RL      K   L  + K      F   E   +     +  +
Sbjct: 124 SE-KDIKGLFADFDTTSNRLGNTVEAKNKRLAAVLKGVAGLTFGNFEGGFENNQIDLFGD 182

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G
Sbjct: 183 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSG 234

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQEL   T+ +    M +  +  D       NIQ
Sbjct: 235 SLLLQAKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDK-----FNIQ 283

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL++  F   + F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 284 LGDTLTEPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKA 338

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G     E +IR++L++N+ +E +++L 
Sbjct: 339 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGV---EQKIRQYLVDNNYVETVISLA 391

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  KT+      Q I+A+ L+    N       ++++   QI+ 
Sbjct: 392 PNLFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETN----NNTLSNEHIEQIIK 444

Query: 455 IYVSRENGKF 464
           ++ ++EN   
Sbjct: 445 VFANKENVDH 454


>gi|291515463|emb|CBK64673.1| type I restriction system adenine methylase (hsdM) [Alistipes
           shahii WAL 8301]
          Length = 517

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 214/558 (38%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E           
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +   + D     + A         ++   ++  S++        N    LE  +
Sbjct: 59  ITFKKLWEMKDADAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAVKRKENILPMLERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A N                 +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAANIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPR 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +   +K  +    +  I+A+  +  ++     +  + +   +
Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y  R+  + +S +   +        +  P R     ++     ++A +   K   
Sbjct: 438 KIVETYRDRKEIEKYSHLATLKEVEENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     ++  ++++ 
Sbjct: 497 AKRAELDKEIEVYLKELG 514


>gi|260589481|ref|ZP_05855394.1| type I restriction-modification system, M subunit [Blautia hansenii
           DSM 20583]
 gi|260540049|gb|EEX20618.1| type I restriction-modification system, M subunit [Blautia hansenii
           DSM 20583]
          Length = 522

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 114/501 (22%), Positives = 189/501 (37%), Gaps = 70/501 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------ 49
           T+       L   IW  A++L G     DF   +L     R +   +             
Sbjct: 4   TKKEQEREELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENITAYINSGEIEAGN 63

Query: 50  ---PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNL----E 101
                   + E+        +  + F  +    F N  +  SL    +           E
Sbjct: 64  IDFDYAKMIDEEAEEAREGLVQEKGFFILPSELFCNVRARASLDENLNETLEQVFCHIEE 123

Query: 102 SYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRV 154
           S   S S+N    +F+DFD +S   +L     ++   L K+    + + L          
Sbjct: 124 SAQGSQSENSFAGLFDDFDVNS--NKLGSTVAKRNERLVKLLDGVAAMNLGSVKDHDIDA 181

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             + YE+L+  + S   +   +F TP DV  L T L       + K        +YDP C
Sbjct: 182 FGDAYEYLMTMYASNAGKSGGEFFTPADVSVLLTKLGTVGKTTINK--------VYDPAC 233

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A   +       K       +GQE+   T+ +C   M +  +  D       
Sbjct: 234 GSGSLLLKAEKLL------GKEAVTSGFYGQEINITTYNLCRINMFLHDIGFDKF----- 282

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I+   TL+       + F   +SNPP+  KW  D + +          RF P   L   
Sbjct: 283 DIECEDTLTNPQHWDDEPFELIVSNPPYSIKWAGDDNPL-----LINDPRFAPAGVLAPK 337

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   M F+MH  + L       G AAIV     ++ G A   E +IR+++++N+ I+ I+
Sbjct: 338 SKADMAFIMHSLSWLAP----NGTAAIVCFPGIMYRGGA---EKKIRQYMVDNNYIDCII 390

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + ++   K +     +  I+AT+    + N       + DD    
Sbjct: 391 QLPNNLFFGTSIATCIMVMKKGKKD---NNILFIDATNECIKVTN----NNKLTDDNIEN 443

Query: 452 ILDIYVSRENGKFSRMLDYRT 472
           I+  +V R   + +  L    
Sbjct: 444 IIKWFVERREIEHTVHLATYD 464


>gi|332877056|ref|ZP_08444807.1| type I restriction-modification system, M subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332684946|gb|EGJ57792.1| type I restriction-modification system, M subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 517

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 221/558 (39%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M+E       L + +W+ A  L G+   +DF    L F   + L           LE   
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIENFVNGELEDDE 58

Query: 53  SAVREKYLAFGGSNIDLESFVKV---AGYSFYNTSEYSLSTL-----GSTNTRNNLESYI 104
            + +E +        +L+  VK    +   ++   +Y  S++        N    LE  +
Sbjct: 59  VSFKELWNMDDEDTAELQEEVKDLCLSEIGYFIEPQYLFSSVIESIKKKENILPMLERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGRDSEEDFGGLFSDIDLASPKLGKTADDKNTLISNVLLALDEIKFGVEASKE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++    +         +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTIGHE--------RLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A            I   +  +GQE  P T+ +    ML+  ++      
Sbjct: 231 PTCGSGSLLLRA----------AHIGNAVEIYGQEKNPTTYNLARMNMLLHGIKF----- 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SDFKIENGDTLEADAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    + GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 331 KTADYAFILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++     +  +  +  +
Sbjct: 384 IGLPANIFYGTSIPTCVLVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPEHIK 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I+D Y  R+  + +S +   +        +  P R     ++     ++A +   K   
Sbjct: 438 KIVDTYRDRKEIEKYSHLATLQEIADNDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     ++  ++++ 
Sbjct: 497 AKRANLDKEIEGYLKELG 514


>gi|197336572|ref|YP_002157415.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
 gi|197315275|gb|ACH64723.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
          Length = 515

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 96/540 (17%), Positives = 199/540 (36%), Gaps = 55/540 (10%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGGSNID 68
           + +W +A  L G  + +++   +L    ++ +  +        +  V +    + G +I+
Sbjct: 12  DTLWDSAVALRGALQPSEYKHPVLGLLFIKYVSDSFTELQVNLKEWVADANHDYYGMDIN 71

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIAR 126
                +     F+   E     L  +  + N+   +       +                
Sbjct: 72  DPDLYEAE-NVFWVPEEARWDFLVGSAKQTNIAKLLDEAVKAIEDNNSQLKGMLYRGFGL 130

Query: 127 LE-KAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           L+  +  L ++      +  +  +     V+   YE  + +F       A  F TP  +V
Sbjct: 131 LKIPSSKLGELIDLLGKLTFNSKEHRSADVLGQAYEFFLGKFALAEGASAGAFYTPESIV 190

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                ++                 LY+P  G+GG +  +   +   G        +  +G
Sbjct: 191 STIVEVIAPTKG-----------QLYEPAIGSGGMVVCSEKFMERNGGERG---DISVYG 236

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T  +    + IR L+ D  ++ +       TL  DL    R  Y ++NPPF ++
Sbjct: 237 QEYTHTTWKMAAMNLTIRGLDFDLGKENA------DTLLNDLHKDLRADYIMANPPFNQE 290

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                             R+  G P  S+ +  ++ H+   L    N  GRA +V+++  
Sbjct: 291 KWGAAKVAG-------DVRWKWGQPSDSNANYAWIQHMLYHL----NETGRAGVVMANGA 339

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           + +      E  IR+ ++E+DL+E +VALP  LF  T I + ++  +  K  +R+G+   
Sbjct: 340 MTSTANN--EDAIRKAIIEDDLVECMVALPPKLFINTQIPSCIFFFNKNK--KRKGETLF 395

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF----SRMLDYRTFGYRRIKV 480
           I+A  L    R E + + + +++   +I + Y +     F    S+ +D   F  +  K+
Sbjct: 396 IDARHLG---RLESRAQLVFDEEHIMEIANTYHAWAKTDFAEKDSKYVDIAGFC-KSGKL 451

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
               +  F+L               +    +Q     +   + +QI      +  +K S+
Sbjct: 452 EDIEKAGFVLSPGRYVGAAE---VEEDEASYQEDMATLTGQLSEQIKKSVSLDEQIKASL 508


>gi|47459121|ref|YP_015983.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
 gi|47458450|gb|AAT27772.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
          Length = 524

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/500 (22%), Positives = 191/500 (38%), Gaps = 77/500 (15%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---------P 50
           M          L   IWK A DL G     DF + +L     R +   L           
Sbjct: 1   MNNNKEIERNELHRTIWKIANDLRGSVDGWDFKQYVLGMLFYRYISENLANYINQGEWKA 60

Query: 51  TR-----------SAVREKYLAFGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTN 95
           T+             +  K        +  + F     + F N     S+     +    
Sbjct: 61  TKKQDFRYENISDDKILSKKEEIK-ELVKEKGFFIRPSHLFVNIRKNASKNKDLNVALDK 119

Query: 96  TRNNLESYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP- 147
               +E+     S   + K +F+D + +S  ++L     E+   L K+  N   ++L   
Sbjct: 120 VFKEIEASANGSSSEKDFKGLFDDINLNS--SKLGSTVNERNEKLTKLINNIGEMKLGNF 177

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    + YE+L+  + S   +   ++ TP++V  L T + L   + + K       
Sbjct: 178 KDNSIDAFGDAYEYLMSMYASNAGKSGGEYYTPQEVSELLTKITLIGKNEINK------- 230

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L +    +       K        GQE+   T+ +C   M +  +  +
Sbjct: 231 -VYDPACGSGSLLLNFAKIL------GKEKVRQGFFGQEINQTTYNLCRINMFLHDINYN 283

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  NI QG TL+  L    + F   +SNPP+  KW    + +          RF P
Sbjct: 284 KF-----NISQGDTLTNPLHNKFEPFEAIVSNPPYSIKWAGKSNPL-----LINDPRFSP 333

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N
Sbjct: 334 AGVLAPESKADLAFVMHSLSYLAS----NGTAAIVTFPGVMYRKGA---EEKIRKYLIDN 386

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+AI+ LP +LFF T+IAT + +L   K E        I+A+  +    N       +
Sbjct: 387 NFIDAIIQLPENLFFGTSIATCVLVLKKNKKENST---LFIDASKEFQKATNS----NKL 439

Query: 445 NDDQRRQILDIYVSRENGKF 464
             +   +IL+ Y  R + ++
Sbjct: 440 LSENISKILNTYEKRLDQEY 459


>gi|325066640|ref|ZP_08125313.1| type I restriction-modification system, M subunit [Actinomyces oris
           K20]
          Length = 519

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 106/496 (21%), Positives = 187/496 (37%), Gaps = 76/496 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++ T   A+L   IW+ A DL G     DF   +L F   R +    E     +     
Sbjct: 1   MSKETE-RAALHQTIWRVANDLRGSLDGWDFKAYVLGFLFYRFIS---ENLTEYINAGER 56

Query: 61  AFGGSNIDLESFVKV----------AGYSFYNTSEYSLSTLGSTNTRN-NLESYIA---- 105
             G  + D                     F+         +     R+ NL   ++    
Sbjct: 57  EAGDPDFDYRFLSHADAEGAREGIVEEKGFFIAPGDLFDNVRERAPRDENLNETLSRIFK 116

Query: 106 ---------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151
                        + + +F+D D +ST  +L     ++   L ++ +    ++L      
Sbjct: 117 SIEASATGTGSESDLRGLFDDVDVNST--KLGRTVAQRNDKLTRLMQAIGDLDLSYGESS 174

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE+L+  + S   +   +F TP++V  +   + +    ++          +YD
Sbjct: 175 IDTFGDAYEYLMTMYASNAGKSGGEFFTPQEVSEVLARITVMGKTSVN--------RVYD 226

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L      +       K        GQE+   T+ +C   M +  +       
Sbjct: 227 PACGSGSLLLKFAKVL------GKDNVRGGFFGQEINLTTYNLCRINMFLHDINF----- 275

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              +I  G TL+       + F   +SNPP+  KW    D            RF P   L
Sbjct: 276 ADFSIAHGDTLTDPAHWDDEPFEAIVSNPPYSTKWIGKDDPA-----LINDPRFSPAGVL 330

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+ + L +     G AAIV     LF G A   E++IR++L+E + ++
Sbjct: 331 APKSKADLAFTMHMLSWLAVD----GTAAIVEFPGVLFRGGA---EAKIRQYLVEYNYVD 383

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP DLFF TNI T + +L   K +     V  ++A+  +    N    +  ++ + 
Sbjct: 384 AVIQLPPDLFFGTNIRTCVIVLKKSKQD---NNVLFVDASKQFVREDN----KNKLSAEN 436

Query: 449 RRQILDIYVSRENGKF 464
           ++ IL+    R +   
Sbjct: 437 QKMILETLAKRVDIDH 452


>gi|289435130|ref|YP_003465002.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289171374|emb|CBH27916.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 871

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/482 (20%), Positives = 186/482 (38%), Gaps = 70/482 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + + N +W  A+ L G  +   +   IL    ++ +                   
Sbjct: 1   MAIKKSEIYNQLWAAADKLRGGVEPARYKNYILTMLFVKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               D       A  SF +  ++   T        ++ +      +N K I +  DF S 
Sbjct: 45  YKTSDDWEIEIPADSSFDDIVKHKFQTDIGEKINTSISAIAEK--NNLKGIIDIADFDS- 101

Query: 124 IARLEKA----GLLYKICKNFSGIE---LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              L +       +  +   F   E          D ++ + YE+L+R+F  +  +    
Sbjct: 102 -NELGEGKTHVDKVSDLVAIFQKPELDFTKNRAGGDDILGDAYEYLMRKFAQDSGKSKGQ 160

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  +   ++         ++     T+YDP CG+G  L  A +           
Sbjct: 161 FYTPGEVSRVMARVI------GLDKATSSSMTVYDPACGSGSLLIRAADVAL-------- 206

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
              +  +GQE +P T  +    +++           +  IQ+G+TL+   +      KRF
Sbjct: 207 -VEITIYGQEYDPSTAGLARMNLVLHN-------KGAGEIQRGNTLADPKWKENNQLKRF 258

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            Y + NPPF  K   D    +   + G     G G+P   +G   + +H+   L+     
Sbjct: 259 DYIVVNPPFSDKSWTDGTLPD---QYGRYSEVGYGVPPEKNGDYAWFLHVLKSLKAK--- 312

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+AAI+L    LF G     E EIR+ ++++  I+ I+ LP ++FF T I   + I+  
Sbjct: 313 -GKAAIILPHGVLFRGNT---EGEIRKKIIDHGYIKGIIGLPANIFFGTGIPACIIIVDK 368

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470
               ER G + +I+A+  +     EG K R + +    +I+  +    + + K++R +  
Sbjct: 369 EDAVEREG-IFMIDASQDFV---KEGNKNR-LREQDIEKIVRTFNTMDQSDTKYARFVLN 423

Query: 471 RT 472
             
Sbjct: 424 EE 425


>gi|302347045|ref|YP_003815343.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|302151002|gb|ADK97263.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 518

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 110/556 (19%), Positives = 208/556 (37%), Gaps = 75/556 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------SA 54
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E           
Sbjct: 1   MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANDALVDDE 58

Query: 55  VREKYLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTL-----GSTNTRNNLESY 103
           V  K L     + D+E   +      +    ++    +  S++        N    LE  
Sbjct: 59  VTFKELWSMEKDTDIEELQESVKTECIENIGYFIEPNFLFSSVIESIKKKENILPILERS 118

Query: 104 IASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151
           +    D+   +   EDF     D      +L     +K  L+  +      I+   +   
Sbjct: 119 LKRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQ 178

Query: 152 DRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           +  +  + YE++I +F +   + A +F TP++V  +   ++              +R +Y
Sbjct: 179 EIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHA--------RLRNVY 230

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L  A +                  GQE  P T+ +    ML+  ++     
Sbjct: 231 DPTCGSGSLLLRAASIGHAN----------EIFGQEKNPTTYNLARMNMLLHGIKF---- 276

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L  
Sbjct: 277 -SNFRIENGDTLEADAFGDTQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAP 330

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389
                  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++A
Sbjct: 331 RKTADYAFILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDA 383

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP ++F+ T+I T + +   +K  +    +  I+A+  +  I+     +  +     
Sbjct: 384 IIGLPANIFYGTSIPTCILVF--KKCRKEDDSILFIDASKDFEKIKT----QNKLRPQHI 437

Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++I+D Y  R+  + +S +            +  P  +    ++  +         + L 
Sbjct: 438 QKIVDTYRDRKEIEKYSHLATLEEIAENDYNLNIPRYVDTFEEEEPIDIHAVMKEIKDLE 497

Query: 509 PLHQSFWLDILKPMMQ 524
                   +I   + +
Sbjct: 498 AKRADLDKEIEGYLKE 513


>gi|226310298|ref|YP_002770192.1| type I restriction modification system DNA methylase [Brevibacillus
           brevis NBRC 100599]
 gi|226093246|dbj|BAH41688.1| type I restriction modification system DNA methylase [Brevibacillus
           brevis NBRC 100599]
          Length = 515

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 184/487 (37%), Gaps = 66/487 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVREKYL- 60
               A L + IWK A D+ G     DF + +L     R +               +    
Sbjct: 4   AAQRAELQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDESVKYAEL 63

Query: 61  -------AFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGST--NTRNNLESYIASFSD 109
                        I  + +       F N ++   +  +L +      + +ES    +  
Sbjct: 64  PDDIITKEIKEDAIKTKGYFIYPSQLFANIAKTANTNESLNTDLAAIFSAIESSANGYPS 123

Query: 110 NAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162
               I   F DF +T  RL     +K+  L  + K   G+           +  + YE+L
Sbjct: 124 EL-DINGLFADFDTTSNRLGNTVKDKSSRLAAVIKGVEGLNFGDFEDSHIDLFGDAYEYL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L  
Sbjct: 183 ISNYAANAGKSGGEFFTPQCVSKLIAQLAIHNQTTINK--------IYDPAAGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A                   +GQE+   T+ +    M +  +  D       NI  G+TL
Sbjct: 235 AKKQFDAHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDKF-----NIALGNTL 283

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
               F  ++ F   +SNPP+   W    D            RF P   L   S     F+
Sbjct: 284 LDPHFGDEKPFDAIVSNPPYSVNWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+
Sbjct: 339 LHTLSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETVISLAPNLFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            T+IA  + +LS  KT+    K Q I+A+  D +    N      I+ D+   +I+ I+ 
Sbjct: 392 GTSIAVNILVLSKHKTD---NKTQFIDASGVDFYKKETN----NNILTDEHIERIMKIFN 444

Query: 458 SRENGKF 464
           ++E+   
Sbjct: 445 NKEDIDH 451


>gi|289433646|ref|YP_003463518.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
 gi|289169890|emb|CBH26430.1| type I restriction-modification system, M subunit [Listeria
           seeligeri serovar 1/2b str. SLCC3954]
          Length = 858

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/526 (20%), Positives = 186/526 (35%), Gaps = 79/526 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTR-----------SA 54
           ++  +   +W  A +L G    + +   +L     + L    LE  +             
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEIFKANSDCGQVSESEL 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103
           V E   A       L+  ++     F        + L                  N E  
Sbjct: 63  VEEYAKARADYGESLDKMIQGVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I  +  SD+ + +F       T   L     E++  +  + + F  + +        V+ 
Sbjct: 123 ISVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +      +   L  +GQE    T+ +    +L+  +  +        +
Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEKMS-----V 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
           + G TLS+D             F   + NPP+            K +      RF     
Sbjct: 283 KNGDTLSEDWPEDPNRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFEIAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I
Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP +LF  T I   + IL   +T      V +I+A+  +  +     K+ ++ + 
Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRT--ISDPVLVIDASRNFIKV----GKQNVLQEK 443

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
              +I+D YV R     +S +            +  P  +  I ++
Sbjct: 444 DIARIVDTYVERAEKTGYSHLASREEIIENEYNMNIPRYVEAIDEE 489


>gi|15611853|ref|NP_223504.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4155366|gb|AAD06378.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 528

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 115/536 (21%), Positives = 195/536 (36%), Gaps = 74/536 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
              + +   L N IWK A +L G     DF + +L     R +   +    +        
Sbjct: 13  NHASLARNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMANHHNEYERKIDP 72

Query: 57  ---------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
                    E+      S I+ + F       F N  + + +      T  N+ + I   
Sbjct: 73  NFDYASLSDEEAEIVRKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFNEIEKS 132

Query: 108 S------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSN 157
           S      +N K +F D D +S     +   +   L KI +   G++L         V  +
Sbjct: 133 SLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVFGD 192

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  + S   +   ++ TP++V  L   + L   + + K        +YDP CG+G
Sbjct: 193 AYEYLMAMYASNAGKSGGEYFTPQEVSELLAKITLHNQENINK--------VYDPCCGSG 244

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      + D              GQE+   T+ +C   M +  +          +I 
Sbjct: 245 SLLLQFSKVLGDKNVLKG------YFGQEINLTTYNLCRINMFLHDIN-----YSKFHIA 293

Query: 278 QGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDG 334
            G TL        + F   +SNPP+  KW  D + +          RF     L   +  
Sbjct: 294 LGDTLLDPKHEDDEPFDAIVSNPPYSTKWIGDNNPLLMN-----DERFNKAGALAPKNAA 348

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F MH+ + L       G AAIV     L+   A   E +IR +L++ + I+ ++ALP
Sbjct: 349 DLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRSGA---EKKIREYLVKENFIDCVIALP 401

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF TNIAT + +L   K ++       I+A+  +        K+  +    R +IL 
Sbjct: 402 ENLFFGTNIATCILVLKKNKKDDTT---LFIDASKEFLKE----GKKNKLKAHNREKILQ 454

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
            Y+ R+  K    L           + +     + L        E       +  L
Sbjct: 455 TYIERKAIKHFSALAN---------IEKIQENDYNLSVNRYVEQEDTKEIIDIKAL 501


>gi|37528149|ref|NP_931494.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787586|emb|CAE16691.1| Type I site-specific deoxyribonuclease HsdM [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 518

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 194/492 (39%), Gaps = 71/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54
           MT  T   A L   IW+ A D+ G     DF + +L     R +                
Sbjct: 1   MT-STQQRAELQRQIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDESIN 59

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
             E   A    +I  ++  K  GY  Y  S+   +   + N  +NL   + S        
Sbjct: 60  YAELSDAVITDDIKDDAI-KTKGYFIY-PSQLFANIAENANKNDNLNKDLNSIFVAIESS 117

Query: 108 ------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
                     K +F   DF +T  RL     +K   L  + K  +G++    ++    + 
Sbjct: 118 ANGYPSEAEIKGLFA--DFDTTSNRLGNTVKDKNTRLAAVLKGVAGLKFGQFESNKIDLF 175

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G
Sbjct: 176 GDAYEFLISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTSVNK--------IYDPAAG 227

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A  H                 GQE+   T+ +    M +  +  D       N
Sbjct: 228 SGSLLLQAKKHFDAHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----N 276

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G+TL++  F   + F   +SNPP+  KW    D            RF P   L   S
Sbjct: 277 IMLGNTLTEPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKS 331

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++
Sbjct: 332 KADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVIS 384

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D+   QI
Sbjct: 385 LAPNLFFGTTIAVNILVLSKHKTDTTT---QFIDASPLFKKETN----NNILTDNHIEQI 437

Query: 453 LDIYVSRENGKF 464
           + ++ S+++ + 
Sbjct: 438 MQVFDSKDDVEH 449


>gi|145628525|ref|ZP_01784325.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145639725|ref|ZP_01795327.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittII]
 gi|144978995|gb|EDJ88681.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 22.1-21]
 gi|145271093|gb|EDK11008.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae PittII]
          Length = 515

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 111/492 (22%), Positives = 186/492 (37%), Gaps = 69/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54
           M       A L   IW+ A D+ G     DF + +L     R +                
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFY------------NTSEYSLSTLGSTNTRNNLES 102
                          E  +K  GY  Y            NT+    + L   N   ++E+
Sbjct: 61  YSAFNDDAPIIAAIKEDTIKAKGYFIYPSQLFKNVVATANTNPNLNTDLK--NIFTDIEN 118

Query: 103 YIASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM- 155
               F  + + I   F DF +T  RL     +K   L  + K  + ++          + 
Sbjct: 119 SATGF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLF 177

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G
Sbjct: 178 GDAYEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAG 229

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     +              GQE+   T+ +    M +  +  D       +
Sbjct: 230 SGSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 278

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S
Sbjct: 279 IALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKS 333

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++A
Sbjct: 334 KADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIA 386

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QI
Sbjct: 387 LAPNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQI 439

Query: 453 LDIYVSRENGKF 464
           L ++  +E+   
Sbjct: 440 LKLFADKEDVPH 451


>gi|253569687|ref|ZP_04847096.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp.
           1_1_6]
 gi|251840068|gb|EES68150.1| type I restriction enzyme EcoR124II M protein [Bacteroides sp.
           1_1_6]
          Length = 517

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 106/544 (19%), Positives = 208/544 (38%), Gaps = 77/544 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E   ++  +   
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIETYANSALDDDE 58

Query: 58  --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +  ++ D     +           ++   ++  S++        N    LE  +
Sbjct: 59  VTFKELWEMTDSDAPELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKRKENVLPMLERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGH--------NRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +                 +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAASIGKAAY----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            S  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SSFKIENGDTLEWDAFDDMQFDAVVANPPFSAEWSAADKFNNDDRFS-KAGR----LAPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI
Sbjct: 331 KTADYAFILHMVYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++     +  +     +
Sbjct: 384 IGLPANIFYGTSIPTCILVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPQHIQ 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y  R+  + +S +   +        +       ++        ++      +++ 
Sbjct: 438 KIVETYRDRKEIEKYSHLATLQEVAENDYNLN---ISRYVDTFEEEEPIDIKAVMAEITE 494

Query: 510 LHQS 513
           L   
Sbjct: 495 LEAK 498


>gi|295090549|emb|CBK76656.1| type I restriction system adenine methylase (hsdM) [Clostridium cf.
           saccharolyticum K10]
          Length = 816

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 95/514 (18%), Positives = 195/514 (37%), Gaps = 74/514 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + + + IW   + L G  +   +   IL    ++ +    + +                D
Sbjct: 6   SEIYSQIWAACDKLRGGVEPARYKDYILTLLFVKYVSDRFKSS----------------D 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS-TIARL 127
                   G SF +                 +     +  ++ K I +  DF+S  +   
Sbjct: 50  NWDIEVPDGGSFDDIIALKYKKNIGEGINIIIGKLAEA--NDLKGIIDIADFNSEELGTD 107

Query: 128 EKA-GLLYKICKNFSGIE---LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           ++A   L  + + F   E    +     D ++ + YE L+R+F  +  +    F TP +V
Sbjct: 108 KEAVDKLSGLVEIFQKPELDFTNNRAGGDDILGDAYEFLMRKFAQDSGKSKGQFYTPGEV 167

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             +   ++         ++     T+YDP CG+G  L  A +         + P  +  +
Sbjct: 168 SRIMAKVI------GIDKATDPSMTVYDPACGSGSLLIRAAD---------EAPCEISIY 212

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGK-------RFHY 294
           GQE +  T  +    +++              +  G+  TLS   +  +        F+Y
Sbjct: 213 GQEKDNSTAGLARMNLVLHN--------KGAGVIVGNKSTLSAPQYKDENNPELLKTFNY 264

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  K   D   +   +  G       G+P   +G   +L+H+   L+      G
Sbjct: 265 IVVNPPFSDKSWMDGITIPDSY--GRYSEAVLGVPPEKNGDYAWLLHVLKSLKST----G 318

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AAI+L    LF G A   E++IR+ +++   I+ I+ LP +LF+ T I   + +L    
Sbjct: 319 KAAIILPHGVLFRGNA---EADIRKRIIDRGYIKGIIGLPANLFYGTGIPACILVLDKED 375

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRT 472
             +R G + +I+A+  +     +G K R + +    +I+  +++ +     ++R +    
Sbjct: 376 AADRTG-IFMIDASKGYV---KDGNKNR-LREQDIHKIVTTFLTMDESDPKYARFVPNEE 430

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
               ++     L +   +D +    L+       
Sbjct: 431 I---KVTNEYNLNIPRYIDSSEPEDLQDIDAHLN 461


>gi|261380921|ref|ZP_05985494.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria
           subflava NJ9703]
 gi|284796174|gb|EFC51521.1| site-specific DNA-methyltransferase, HsdM subunit [Neisseria
           subflava NJ9703]
          Length = 871

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 111/488 (22%), Positives = 192/488 (39%), Gaps = 59/488 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVREKYLAFGG- 64
           +   LA  IW++A  +    +  ++   IL F   + L   LE        EK       
Sbjct: 2   NKQQLAAKIWQSANKMRSKIEANEYKDYILGFIFYKFLSDKLEKFALEQGLEKSNFADEL 61

Query: 65  ---SNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116
              + + +    +  GY   Y     +    GS     ++ + +++FS N       +F+
Sbjct: 62  TESNGVLVNHIKRNLGYFISYEHLFSTWLAQGSDFNIAHVRTAMSAFSRNIADNYTTVFD 121

Query: 117 DF--DFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEV 170
                  S +++L          +   F  I   P        V+  IYE+LI  F +  
Sbjct: 122 GIFKTLESGLSKLGDGATNQTNAVKDLFVLIADIPMDGKQGYDVLGFIYEYLISMFAANA 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++ D      +       ++YDPT G+G  L +  + VA  
Sbjct: 182 GKKAGEFYTPHEVSLLMSEIIADHLKDREEI------SIYDPTSGSGSLLINIGHSVAKH 235

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDLFT 288
                    +  + QEL+  T+ +    +++R +       L  NI  +   TL  D   
Sbjct: 236 LKSA---DSIKYYAQELKENTYNLTRMNLVMRGI-------LPSNIFTRNADTLEDDWPL 285

Query: 289 GKRFHY---CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                Y    +SNPP+ + W       +  +K     RF  G+   +     FL+H    
Sbjct: 286 EGEPLYLDAVVSNPPYSQPWNPKDKESDIRYK-----RF--GVAPQAKADFAFLLHDLFH 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G   IVL    LF G     E +IR+ L+E + I+AI+ LP ++FF T I T
Sbjct: 339 LKPD----GIMTIVLPHGVLFRGGE---EEKIRKNLIEYNHIDAIIGLPANIFFGTGIPT 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +L   + E  R  V +I+A+  +  +     K   +     ++I+D    R    KF
Sbjct: 392 IIVVL---RQERERNDVLMIDASKYFIKV----GKNNHLQASDIKRIVDCVTHRRELPKF 444

Query: 465 SRMLDYRT 472
           SR++    
Sbjct: 445 SRIVPKAE 452


>gi|317181216|dbj|BAJ59002.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 821

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 120/596 (20%), Positives = 223/596 (37%), Gaps = 87/596 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
            +  + +S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 48  DAKNNTDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEKNDLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARTRKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESQKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 470 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525


>gi|317182160|dbj|BAJ59944.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 529

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 122/580 (21%), Positives = 208/580 (35%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSAA--------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT- 51
           M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQANKSSSLERNELHNTIWKMANELRGSVDGWDFKQYVLGILFYRYISENMAYYI 60

Query: 52  -RSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
            +                E+        I  + F       F N  + + +      T  
Sbjct: 61  NKQEREHDPNFDYASLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPNNGDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLNKILQAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  D + +          RF   
Sbjct: 284 --YSKFHIVHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPI-----LINDERFSKA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L       G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 EHNREKILQTYTERKIIKHFSALAS---------IEKIKENDYNLSVNRYVEQEDTKEII 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L      +I + + +Q       +  +KE  +   A
Sbjct: 494 DIKAL----QFEISQIVQKQSALRNSLDRIIKELEEGQNA 529


>gi|301168868|emb|CBW28459.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae 10810]
          Length = 514

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 183/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESVN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  +N             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEFLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ ++A++AL  
Sbjct: 336 FAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|253991441|ref|YP_003042797.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782891|emb|CAQ86056.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica]
          Length = 721

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 122/491 (24%), Positives = 195/491 (39%), Gaps = 69/491 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT F    A L   IW  A D+ G     DF + +L     R +         A  +   
Sbjct: 1   MTSF-QQRAELHRQIWAIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSIH 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A   S I  +     +K  GY  Y  S+   +     +T + L + + S         
Sbjct: 60  YAALDDSIITDDIKDDAIKTKGYFIY-PSQLFCNVAAKASTNDRLNADLNSIFVAIESSA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMS 156
                  + K +F   DF +T  RL     +K   L  + K   G++L   +     +  
Sbjct: 119 YGYPSEADIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVLKGVEGLKLGNFNDHQIDLFG 176

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+
Sbjct: 177 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A  H  +              GQE+   T  +    M +  +  D       +I
Sbjct: 229 GSLLLQAKKHFDNHIIEEG------FFGQEINHTTFNLARMNMFLHNINYDKF-----DI 277

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           + G+TL++  F  ++ F   +SNPP+  KW    D            RF P   L   S 
Sbjct: 278 RLGNTLTEPHFGDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L
Sbjct: 333 ADFAFVLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISL 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +LFF T IA  + +LS  KT+     VQ I+A+ L+    N      I+ D    QI+
Sbjct: 386 APNLFFGTTIAVNILVLSKHKTDTS---VQFIDASGLFKKETN----NNILTDAHIAQIM 438

Query: 454 DIYVSRENGKF 464
            ++ S+ +   
Sbjct: 439 QVFSSKSDVDH 449


>gi|333030656|ref|ZP_08458717.1| type I restriction-modification system, M subunit [Bacteroides
           coprosuis DSM 18011]
 gi|332741253|gb|EGJ71735.1| type I restriction-modification system, M subunit [Bacteroides
           coprosuis DSM 18011]
          Length = 515

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 116/554 (20%), Positives = 201/554 (36%), Gaps = 69/554 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT  +     L   IWK A D+ G     DF + +L     R +         A  + + 
Sbjct: 1   MT-SSNQRKELQAKIWKIANDVRGSVDGWDFKQFVLGTLFYRFISENFSNYMEAGDDSFH 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS- 108
                            I  + +       F N +  + +          +   I S + 
Sbjct: 60  YASLPDDIITPDLKDDAIKTKGYFIYPSQLFKNVAHTANTNTNLNTDLKAIFDAIESSAL 119

Query: 109 -----DNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                   K +F DFD       +T+    K   L  + K    ++    +     +  +
Sbjct: 120 GYASEKEIKGLFADFDTTSTRLGNTVE--NKNKRLAAVLKGVEELDFGDFEENQIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G
Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQQVSKLIAQLAMHKQTSVNK--------IYDPAAGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H  +              GQE+   T+ +    M +  +  D       NI 
Sbjct: 230 SLLLQAKKHFDNHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIA 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL    F   + F   +SNPP+  KW  D D            RF P   L   S  
Sbjct: 279 LGDTLINPQFGDDKPFDAIVSNPPYSVKWIGDDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 334 DFAFVLHALSYLSSR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K +    K Q I+A+        +      + D   ++I+ 
Sbjct: 387 PNLFYGTSIAVNILVLSKHKAD---TKTQFIDASG--EDFFKKVTNNNELTDAHIKKIMQ 441

Query: 455 IYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR---KLSPL 510
           I+ S+EN K+ ++ +D          +     + F   +  +  +E +       K    
Sbjct: 442 IFDSKENVKYIAQSIDNTQIAKNDYNLSVSSYVEFEDTREKVDIVELNKELAVTVKKIDQ 501

Query: 511 HQSFWLDILKPMMQ 524
            ++    I+K +  
Sbjct: 502 LRTDIDAIVKEIEA 515


>gi|284048513|ref|YP_003398852.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
 gi|283952734|gb|ADB47537.1| type I restriction-modification system, M subunit [Acidaminococcus
           fermentans DSM 20731]
          Length = 857

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/493 (21%), Positives = 192/493 (38%), Gaps = 78/493 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSAV 55
           +   LA+ IW++A  +    +  ++   IL F   + L               E  R  V
Sbjct: 2   NKQKLASKIWESANKMRSKIEANEYKDYILGFIFYKYLSDQEERYLLQRDYRPEDIRDYV 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNA 111
            E+         D   +       F      +  ++G   T +N+ + ++SF    S   
Sbjct: 62  NEEDAETVQMVQDNLGYFIAYKDMFS-----TWLSMGRDFTVDNVRTALSSFTRLISPTH 116

Query: 112 KAIFED-FD-FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           K +F+  F+   + +++L +        +  + +    I +        V+  IYE+LI 
Sbjct: 117 KLVFDKIFNTLETGLSKLGENTKSQTKAVRDLLQLIKDIPMDGK-QDYDVLGFIYEYLIS 175

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   + A +F TP +V  L + ++        +       ++YDPT G+G  L +  
Sbjct: 176 QFAANAGKKAGEFYTPHEVSQLMSEIIAHYLQGREEI------SIYDPTSGSGSLLINIG 229

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTL 282
           +  A           +  + QEL+  T+ +    +++R +       L  NI  + G TL
Sbjct: 230 HAAAKYMKDANK---IRYYAQELKQNTYNLTRMNLVMRGI-------LPANIIARNGDTL 279

Query: 283 SKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +D            +        +SNPP+ ++W+      +         RF  GL   
Sbjct: 280 EEDWPYFDDSDPTGTYNPLYVDAVVSNPPYSQQWDPSGKDNDPR-----YSRF--GLAPK 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G     E  IR+ L+E + I+AI+
Sbjct: 333 SKADYAFLLHDLYHLKPD----GIMNIVLPHGVLFRGGE---EGTIRKNLVEYNHIDAII 385

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T I T + +L  ++       V +++A+  +        K   +     R+
Sbjct: 386 GLPANIFFGTGIPTIIMVLRQKRE---NTDVLIVDASKGFVKE----GKNNKLRASDIRR 438

Query: 452 ILDIYVSRENGKF 464
           I+D  +SR +   
Sbjct: 439 IVDTVISRRDVPQ 451


>gi|284931718|gb|ADC31656.1| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. F]
          Length = 877

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 188/492 (38%), Gaps = 74/492 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSAV 55
           +   L   IW  A ++ G+ +  D+   IL F   + L               +  +   
Sbjct: 2   TKQELVREIWAIANEMRGNIEANDYKDYILGFLFYKYLSDKQDEYFANKNVVKDEDKKQY 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNL------------ES 102
                      I            +Y   E   ST + + N  ++L             S
Sbjct: 62  LVALAEAEKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFERS 121

Query: 103 YIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +  + ++ K IF+  D    I +L     E++  ++ IC   + I +        ++  
Sbjct: 122 ILEKYEESFKDIFK--DLQVGIQKLGNTAYERSEAIWNICNLINKIPIT-SKQDYDILGF 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+LI  F +   + A +F TP +V  L + +  +    L         ++YDPT G+G
Sbjct: 179 VYEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGL------KNVSIYDPTSGSG 232

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +            +  + QE+   T+ +    +L+  + S          +
Sbjct: 233 SLLITLGRELK----KIDKNVKIQYYAQEVIDTTYNITRMNLLMNDVHSVNMFA-----K 283

Query: 278 QGSTLSKD--------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            G TL +D         +  KR    +SNPP+   W  +              RF  GL 
Sbjct: 284 CGDTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKEN--------DPRFRYGLA 335

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + FL+H    LE      G   IVL    LF G     E +IR+ L+ +D I+A
Sbjct: 336 PKSKSELAFLLHSLYHLEDH----GILTIVLPHGVLFRGG---SELQIRQNLISHDHIDA 388

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP+++FF T I T + +L   KT++ +  V  I+A+  +T    EG K   +     
Sbjct: 389 IIGLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFT---KEGNK-NKLQSSDI 444

Query: 450 RQILDIYVSREN 461
            +I D + +RE+
Sbjct: 445 MRIYDAFSARED 456


>gi|322513993|ref|ZP_08067068.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322120219|gb|EFX92177.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 533

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 122/491 (24%), Positives = 192/491 (39%), Gaps = 68/491 (13%)

Query: 2   TEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-- 57
              T     A L   IW+ A D+ G     DF + +L     R +         A  E  
Sbjct: 19  NNMTAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESV 78

Query: 58  KYLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS----- 108
            Y       I  E     +K  GY  Y  S+   + + + NT  NL S +   FS     
Sbjct: 79  NYAKLPDEIITPEIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNSELKQIFSDIENS 137

Query: 109 ----DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV--MS 156
                + + I   F DF +T  RL     +K   L  + K  + ++   D   + +    
Sbjct: 138 ATGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFG-DFEDNHIDLFG 196

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+
Sbjct: 197 DAYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGS 248

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A     +              GQE+   T+ +    M +  +  D       +I
Sbjct: 249 GSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DI 297

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G+TL    F   + F   +SNPP+  KW    D            RF P   L   S 
Sbjct: 298 ALGNTLMNPQFGDDKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGVLAPKSK 352

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E ++AL
Sbjct: 353 ADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIAL 405

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL
Sbjct: 406 APNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQIL 458

Query: 454 DIYVSRENGKF 464
            ++  +E+   
Sbjct: 459 KLFADKEDVPH 469


>gi|90961896|ref|YP_535812.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
 gi|90821090|gb|ABD99729.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
          Length = 529

 Score =  276 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 113/543 (20%), Positives = 212/543 (39%), Gaps = 72/543 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRSAVREKYLAF 62
           +L   +   A  L       ++    L     + L  +       L   ++   E+    
Sbjct: 7   TLERSLDNAANVLRSKMDANEYKNYTLGTIFYKYLSDSMLYYVAELLEEKNISLEEAQKL 66

Query: 63  GGSNIDLESFVKVAGYSF------YNTSEYSLSTLGS-----TNTRNNLESYIASFSDNA 111
              N D +  ++     F       NT    L ++ +     +   +   S I S     
Sbjct: 67  YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNS-IESQGKEF 125

Query: 112 KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F+D+D  S   RL       +  + ++      +E+     P+  + N YE+LI++F
Sbjct: 126 EGLFDDYDLYSK--RLGNTAQKQSDTISEVLSAIGKLEIV--KTPEDTLGNAYEYLIKQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE  + A +F TP+ V  L   L L   D           T+YDPT G+G  L +   +
Sbjct: 182 ASESGKKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKY 235

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V       + P  +   GQE+   T+ +    M++  ++      +++ ++   TL +D 
Sbjct: 236 V-------EHPKRITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDW 283

Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342
              +   F   + NPP+  KW  +           +  RF     LP  S     FL+H 
Sbjct: 284 PVEEITNFDAVVMNPPYSHKWSANAGF-------KDDPRFSAYGVLPPKSKADYAFLLHG 336

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      G  AIVL    LF G A   E +IR+ LLEN  I+A++ LP +LF+ T+
Sbjct: 337 YYHLKHS----GVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTS 389

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
           I T + +L   K +     V  I+A+  +  ++     +  + D+   +IL  Y  R++ 
Sbjct: 390 IPTTIVVLKKDKQDR---DVLFIDASKDFEKVKT----QNELRDEDVEKILTTYKERKDI 442

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            K++ +  +         +  P  +     +  +   E     R+ +   +   ++++  
Sbjct: 443 DKYAHLASFDEIKENEFNLNIPRYVDTFEPEPEINLDEVSKELRETNEKIKENEIELISM 502

Query: 522 MMQ 524
           +  
Sbjct: 503 LKD 505


>gi|29349946|ref|NP_813449.1| typeI restriction enzyme EcoR124II M protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341857|gb|AAO79643.1| Type I restriction enzyme EcoR124II M protein [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 517

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 106/558 (18%), Positives = 214/558 (38%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E   +       
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALADDD 58

Query: 58  --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +   + D     + A         ++   ++  S++        N    LE  +
Sbjct: 59  ITFKELWETDDADAIELQEEAKNQCLENIGYFIEPQFLFSSVIEAIKRKENILPMLERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   +DF     D      +L     +K  L+  +      I    +   +
Sbjct: 119 KRIEDSTLGQDSEDDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDINFGLEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGH--------QRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +                 +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAASIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +   +K  +    +  I+A+  +  ++     +  + +   +
Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y  R+  + +S +   +        +  P R     ++     ++A +   K   
Sbjct: 438 KIVETYRDRKEIEKYSHLASLQEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     ++  ++++ 
Sbjct: 497 AKRAELDKEIEVYLKELG 514


>gi|212716798|ref|ZP_03324926.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660276|gb|EEB20851.1| hypothetical protein BIFCAT_01737 [Bifidobacterium catenulatum DSM
           16992]
          Length = 853

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 106/516 (20%), Positives = 197/516 (38%), Gaps = 66/516 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65
           +   LA+ IW++A  +    +  ++   IL F   + L    L   +++   +      +
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSETELMRLKASDFTEDDLPQLT 61

Query: 66  NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNA----KAIFED 117
             + +    V G   Y  +      +    G+    +N+   +++FS N     K +F+ 
Sbjct: 62  EDNPDIVEFVQGECGYFIAYDNLFSTWIKQGNDFEISNVRDALSAFSRNINPAHKKVFDG 121

Query: 118 -FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            FD   + +++L      ++     +      I          V+  IYE+LI  F +  
Sbjct: 122 IFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISNFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L      VA  
Sbjct: 181 GKKAGEFYTPSEVSQLMSEIVAWHLQGR------EQIKIYDPTSGSGSLLIHIGQAVARR 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +   P  ++ + QEL+  T+ +    +++R +  D         + G TL  D     
Sbjct: 235 NGN---PDSIMYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDDWPWFD 286

Query: 291 R------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                            +SNPP+ + W+     +          RF  G+   S     F
Sbjct: 287 TLENKEETYNPLFVDAVVSNPPYSQNWDPTDKEI--------DPRFSYGIAPKSKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    L       G   IVL    LF G     E +IR+ L+EN  I+AI+ LP ++F
Sbjct: 339 LLHDLYHLRAD----GIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-V 457
           F T I T + +L  ++ +    +V +++A+  +        K   +     ++I+D+   
Sbjct: 392 FGTGIPTIVMVLRKKRDD---DRVLIVDASKHFIKD----GKNNKLQASDIKRIVDVVSN 444

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           +R   KFSR++           +  P  +    D  
Sbjct: 445 NRTVPKFSRLVSIDEIRANDYNLNIPRYVDSSEDAE 480


>gi|260887979|ref|ZP_05899242.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|330838539|ref|YP_004413119.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|260862230|gb|EEX76730.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
 gi|329746303|gb|AEB99659.1| type I restriction-modification system, M subunit [Selenomonas
           sputigena ATCC 35185]
          Length = 525

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 113/498 (22%), Positives = 192/498 (38%), Gaps = 72/498 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
            +     A L   IW+ A DL G     DF + +L     R +   L         E   
Sbjct: 3   NKKEMERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTNYLNREAQEAGD 62

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           +A     L+   +  + E+ V+  GY F   SE   +   S  T  NL   +     N +
Sbjct: 63  AAFDYAALSDEEAETERENLVEEQGY-FILPSELFANVRKSAPTNENLNETLEKVFHNIE 121

Query: 113 -------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDR 153
                         +FED D +S   +L     E+   L K+      ++L H       
Sbjct: 122 ASATGTASENDLAGLFEDLDVNS--NKLGATVKERNAKLVKLLDGIGEMQLGHYRDNTID 179

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   ++ TP++V  L T L +     + K        +YDP 
Sbjct: 180 AFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTRLTVIGKARVNK--------VYDPA 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      +       K       +GQE+   T+ +C   M +  +  D      
Sbjct: 232 CGSGSLLLKFAKIL------GKENVRNGFYGQEINITTYNLCRINMFLHDINFD-----D 280

Query: 274 KNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I +G TL+       + F   +SNPP+  +W   ++ +          RF P   L  
Sbjct: 281 FDIARGDTLTDPQHDAFEPFEAIVSNPPYSIRWAGKENPL-----LINDPRFAPAGVLAP 335

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H    L       G AAIV     ++ G A   E +IR++L++++ ++A+
Sbjct: 336 PSKADFAFILHALAWL----AANGTAAIVCFPGIMYRGGA---EKKIRQYLIDSNFVDAV 388

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T+IAT + +L   K +        I+A+     + N       +  +   
Sbjct: 389 IQLPDNLFFGTSIATCIMVLKKSKADTTT---LFIDASKECIKVTN----NNKLTQENIE 441

Query: 451 QILDIYVSRENGKFSRML 468
            IL +Y  R +   +   
Sbjct: 442 HILQMYTDRADVAHTVRC 459


>gi|156973426|ref|YP_001444333.1| type I restriction-modification system, methyltransferase subunit
           [Vibrio harveyi ATCC BAA-1116]
 gi|156525020|gb|ABU70106.1| hypothetical protein VIBHAR_01115 [Vibrio harveyi ATCC BAA-1116]
          Length = 862

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 199/515 (38%), Gaps = 64/515 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLAF 62
           +   LA  IW++A  +    +  ++   IL F   + L       L        +     
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALT 61

Query: 63  GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117
                 ++   +  GY   Y+    +     +    +N+   +++F    +   K +FE 
Sbjct: 62  EDDTETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 121

Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L     ++   +  +      I +  +     V+  IYE+LI +F +  
Sbjct: 122 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGY-DVLGYIYEYLIEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + +         +        +YDPT G+G  L +  + V   
Sbjct: 181 GKKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSV--- 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             + K    +  + QEL+  T+ +    +++R +  D         + G TL  D     
Sbjct: 232 AKYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITT-----RNGDTLEDDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ +KW+ +    +         RF  GL   +     FL
Sbjct: 287 ESNPQESYQPLYVDAVVSNPPYSQKWDPENKENDPR-----YARF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G   IVL    LF G     E EIR+ L+EN+ I+AI+ LP ++FF
Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIENNHIDAIIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L   K +     V +++A+  +        K   + D   ++I+D  + R
Sbjct: 393 GTGIPTVILVL---KQKRENNDVLIVDASKHFVKE----GKNNKLQDSDIKRIIDAVIHR 445

Query: 460 ENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           ++  KFS+++  +T       +  P  +       
Sbjct: 446 QDNAKFSKVVSKKTIQQNEYNLNIPRYVDSSPAAE 480


>gi|299142935|ref|ZP_07036061.1| type I restriction-modification system, M subunit [Prevotella oris
           C735]
 gi|298575551|gb|EFI47431.1| type I restriction-modification system, M subunit [Prevotella oris
           C735]
          Length = 518

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 210/556 (37%), Gaps = 75/556 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------SA 54
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E           
Sbjct: 1   MSEEL--QQKLRDQLWEVANKLRGNMSASDFMYFTLGFIFYKYLSEKIEKHANDALVDDD 58

Query: 55  VREKYLAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTL-----GSTNTRNNLESY 103
           V  K L     + D+E   +      +    ++    +  S++        N    LE  
Sbjct: 59  VTFKELWAMEKDTDIEELQESVKTECIENIGYFIEPSFLFSSVIESIKKKENILPILERS 118

Query: 104 IASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151
           +    D+   +   EDF     D      +L     +K  L+  +      I+   +   
Sbjct: 119 LKRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQ 178

Query: 152 DRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           +  +  + YE++I +F +   + A +F TP++V  +   ++              +R +Y
Sbjct: 179 EIDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVTLGHA--------RLRNVY 230

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L  A            I       GQE  P T+ +    ML+  ++     
Sbjct: 231 DPTCGSGSLLLRA----------AGIGHANEIFGQEKNPTTYNLARMNMLLHGIKF---- 276

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +  I+ G TL  D F   +F   ++NPPF  +W         +++  + GR    L  
Sbjct: 277 -SNFRIENGDTLEADAFDDTQFDAVVANPPFSAEWNAADKF-NNDYRFSKAGR----LAP 330

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEA 389
                  F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++A
Sbjct: 331 RKTADYAFILHMLYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDA 383

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP ++F+ T+I T + +   RK  +    +  I+A+  +  I+     +  +     
Sbjct: 384 IIGLPANIFYGTSIPTCILVF--RKCRKEDDSILFIDASKDFEKIKT----QNKLRPQHI 437

Query: 450 RQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++I+D Y  R+  + +S +            +  P  +    ++  +         ++L 
Sbjct: 438 QKIVDTYRDRKEIEKYSHLATLEEIAENDYNLNIPRYVDTFEEEEPIDIHAVMKDIKELE 497

Query: 509 PLHQSFWLDILKPMMQ 524
                   +I   + +
Sbjct: 498 AKRADLDKEIEGYLKE 513


>gi|265763432|ref|ZP_06092000.1| type I restriction-modification system, M subunit [Bacteroides sp.
           2_1_16]
 gi|263256040|gb|EEZ27386.1| type I restriction-modification system, M subunit [Bacteroides sp.
           2_1_16]
          Length = 517

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 105/558 (18%), Positives = 214/558 (38%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E   +       
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALADDD 58

Query: 58  --KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +   + D     + A         ++   ++  S++        N    LE  +
Sbjct: 59  ITFKELWETDDADAIELQEEAKNQCLENIGYFIEPQFLFSSVIEAIKRKENILPMLERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   +DF     D      +L     +K  L+  +      I    +   +
Sbjct: 119 KRIEDSTLGQDSEDDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDINFGLEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVAIGH--------QRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +                 +GQE  P T+ +    ML+  ++      
Sbjct: 231 PTCGSGSLLLRAASIGNAVD----------IYGQEKNPTTYNLARMNMLLHGIKF----- 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 331 KTADYAFILHMIYHL----NEGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +   +K  +    +  I+A+  +  ++     +  + +   +
Sbjct: 384 IGLPANIFYGTSIPTCILVF--KKCRKEDDNILFIDASKEFEKVKT----QNKLREQHIQ 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I++ Y  R+  + +S +   +        +  P R     ++     ++A +   K   
Sbjct: 438 KIVETYRDRKEIEKYSHLASLQEIAENDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     ++  ++++ 
Sbjct: 497 AKRAELDKEIEVYLKELG 514


>gi|323971897|gb|EGB67121.1| type I restriction-modification system [Escherichia coli TA007]
          Length = 518

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +            +   Y A  
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSICYAALD 64

Query: 64  G---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
               ++   +  ++  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DGIITDDIKDDAIRTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     +              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEKIMQVFSS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|309750368|gb|ADO80352.1| Type I restriction enzyme M protein HsdM1 [Haemophilus influenzae
           R2866]
          Length = 514

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 184/489 (37%), Gaps = 64/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MVAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEAGDESIN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y       I  +          Y      L    + N  +N             +E+   
Sbjct: 61  YAQLPDEIITPDIKTDAIKTKGYFIYPSQLFKNVAANAGSNPNLNTDLKQIFTDIENSAT 120

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  + + I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 121 GF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGKFEDNHIDLFGDA 179

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +    ++ K        +YDP  G+G 
Sbjct: 180 YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK--------IYDPAAGSGS 231

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       +I  
Sbjct: 232 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIAL 280

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL +  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 281 GNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFAPAGVLAPKSKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +G GRAAIV      +   A   E +IR++L++N+ ++A++AL  
Sbjct: 336 FAFILHALSYL----SGKGRAAIVSFPGIFYRSGA---EQKIRQYLVDNNYVDAVIALAP 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QIL +
Sbjct: 389 NLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQILKL 441

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 442 FADKEDVPH 450


>gi|110003975|emb|CAK98315.1| hsdm protein typeIrestriction enzyme [Spiroplasma citri]
          Length = 509

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 110/546 (20%), Positives = 205/546 (37%), Gaps = 93/546 (17%)

Query: 1   MT--EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE- 57
           MT  E       L + +W  +  L G  + +++ + IL     R L   ++       + 
Sbjct: 1   MTTHEKQNVQQQLFSKLWDISNTLRGTMEPSEYKEYILGLIFYRYLSDNVQSIIEKDLKI 60

Query: 58  -------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---------TRNNLE 101
                          N  LE         +Y   EY    + +            R   E
Sbjct: 61  EGIDYQTALTDEKYRNDFLEVLYDNDSAGYYIEPEYLWQEIINKINIGKFDIFLLRKAFE 120

Query: 102 SYIA---SFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVP 151
             I     +S     + +F+  D  S  ++L     EK+ ++ K+    +  E+      
Sbjct: 121 KLIESTIGYSSEKEFENLFDSVDLDS--SKLGKTEAEKSKIIAKVMLKINESEI------ 172

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             ++ + YE+LI +F SE  + A +F TP+ V  L   L+         +    I+T+YD
Sbjct: 173 -DILGDAYEYLISKFASESVKAAGEFYTPQPVSKLLAKLV--------SQGKTEIKTVYD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L      +           I   +GQEL+  ++ +    M++  L+ +    
Sbjct: 224 PTCGSGSLLLRVYKELK----------IGHLYGQELKTNSYNIARMNMMLHGLKYNK--- 270

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLP 329
              NI  G TL  D F G+ F   ++NPP+   W  ++  +  E       RF     L 
Sbjct: 271 --FNIYNGDTLEDDGFKGQEFEIIVANPPYSSHWSANQKFLSDE-------RFSAYGKLA 321

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             +     F+ ++  KL    +  G  A V+    LF G A   E  IR++++E + I+ 
Sbjct: 322 PKTKADFAFIQNMIYKL----SDNGVMAAVIPRGILFRGNA---ELIIRKYMIEKNWIDN 374

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I++LP ++F+ T+I T + ++   K       +  I+A+  +     +G K   + D   
Sbjct: 375 IISLPVNMFYGTSIPTCIIVMKKCK---IDNSILFIDASKEFQ---KQGNK-NTLTDKNI 427

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
            +I++I+  R+                 + +       + L+         +     +  
Sbjct: 428 IKIINIFNKRK---------NIDKFSNLVDIEIIKENDYNLNIARYVDNTEEKEIINIKA 478

Query: 510 LHQSFW 515
           L  +  
Sbjct: 479 LQDNLI 484


>gi|170682082|ref|YP_001744301.1| type I restriction-modification system, M subunit [Escherichia coli
           SMS-3-5]
 gi|170519800|gb|ACB17978.1| type I restriction-modification system, M subunit [Escherichia coli
           SMS-3-5]
          Length = 523

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|89093018|ref|ZP_01165969.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92]
 gi|89082668|gb|EAR61889.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Oceanospirillum sp. MED92]
          Length = 931

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 119/588 (20%), Positives = 228/588 (38%), Gaps = 72/588 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L          +    +   A  
Sbjct: 14  NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIEQGMTPDDIKALA 73

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117
             + +   +++     F  Y+    +     +    +N+   +++F    +   K +FE 
Sbjct: 74  EDDTETVDYIRREKGFFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 133

Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L     ++   +  +      I +  +     V+  IYE+LI +F +  
Sbjct: 134 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGY-DVLGYIYEYLIEKFAANA 192

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + +         +        +YDPT G+G  L +  + V   
Sbjct: 193 GKKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSV--- 243

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             H K    +  + QEL+  T+ +    +++R +  D         + G TL  D     
Sbjct: 244 AKHAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITT-----RNGDTLEDDWPYFD 298

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ +KWE +    +         RF  GL   +     FL
Sbjct: 299 ETNPQETYQPLYVDAVVSNPPYSQKWEPENKENDPR-----YARF--GLAPKTKADFAFL 351

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G   IVL    LF G     E EIR+ L+EN+ I+AI+ LP ++FF
Sbjct: 352 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIENNHIDAIIGLPANIFF 404

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L   K +     V +++A+  +        K   + D   ++I D  ++R
Sbjct: 405 GTGIPTVILVL---KQKRENNDVLIVDASKHFVKE----GKNNKLQDSDIKRITDAVINR 457

Query: 460 ENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFW 515
           ++  KFS++   +T       +  P  +            A +   I  R+++ L    +
Sbjct: 458 QDNAKFSKVASKKTIQENEYNLNIPRYVDSSPAAETWDIHATMLGGIPNREIAAL--KEY 515

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
            D L  ++  ++    +E       KS    T+ +      ++AFI A
Sbjct: 516 WDALPELLDALFTAKSSEYSELAVEKSQVQATIAL---HPQLLAFIQA 560


>gi|313204423|ref|YP_004043080.1| type II restrictioN-modification system, m subunit [Paludibacter
           propionicigenes WB4]
 gi|312443739|gb|ADQ80095.1| type I restriction-modification system, M subunit [Paludibacter
           propionicigenes WB4]
          Length = 546

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 114/567 (20%), Positives = 205/567 (36%), Gaps = 94/567 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-TRSAVREKYLA----- 61
              L   +W  A  L G     +F   +L F  +R L    E   +  + + Y       
Sbjct: 6   QQQLGKTLWDIANQLRGSMNADNFRDYMLSFLFMRYLSDNYEDVAKKELGQDYPEVTSDI 65

Query: 62  -------------FGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLE----- 101
                        +  +  D+E F K      +     +Y  S++       N E     
Sbjct: 66  LKKLKATSALEIWYNENAADIEEFEKQMRRKVHYVIQPKYLWSSIYEMARTQNGELLHTL 125

Query: 102 ----SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTV 150
                YI   SF    + +F + + +S   +L     E+   L  I        +   + 
Sbjct: 126 KKGFDYIENESFESTFQGLFSEINLNS--DKLGKTYEERNAELCNIITKI-EQGIVKFSK 182

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++ + YE LI +F ++  + A +F TP+ +  + ++++              +  + 
Sbjct: 183 DTDILGDAYEFLIGQFAADSGKKAGEFYTPQQISTILSSIVTLDSQNPAAGKKKKLDKVM 242

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           D  CG+G  L +  N +   G           +GQE    T+ +    ML+  ++     
Sbjct: 243 DLACGSGSLLLNVRNQLGKHGIGK-------IYGQEKNITTYNLARMNMLLHGVK----- 290

Query: 271 DLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           D   +I  G TL  D              F   ++NPPF  +WE  +         GE  
Sbjct: 291 DTEFHIHHGDTLLNDWDILNEMNPAKKMEFDAVVANPPFSLRWEPSEAM-------GEDF 343

Query: 323 RFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   GL   S     FL+H  + L       G  AI+L    LF G A   E  IR  L
Sbjct: 344 RFKNYGLAPKSAADFAFLLHGFHFLAQE----GTMAIILPHGVLFRGGA---EERIRTKL 396

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L++  I+ ++ LP++LFF T I   + +L   K   +   V  INA++ +   + + + R
Sbjct: 397 LKDGNIDTVIGLPSNLFFSTGIPVCILVLKKCK---KFDDVLFINASEYFEKGKRQNRLR 453

Query: 442 R--IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
                  +  R+I++ Y  R   +            RR+ +   ++  + L+ +      
Sbjct: 454 DGEEGEPNDIRKIVETYQFRTEEER---------YSRRVSMEEIVKNDYNLNISRYVS-- 502

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQI 526
              T      +  +   + L  + ++I
Sbjct: 503 ---TAVTAKEIDLNAVNETLVDLEEKI 526


>gi|293189231|ref|ZP_06607954.1| type I restriction-modification system, M subunit [Actinomyces
           odontolyticus F0309]
 gi|292821694|gb|EFF80630.1| type I restriction-modification system, M subunit [Actinomyces
           odontolyticus F0309]
          Length = 526

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 185/502 (36%), Gaps = 79/502 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP-----TRSAVREK----- 58
           A L   IW+ A DL G     DF   +L F   R +   L        R A+  +     
Sbjct: 8   AELHKTIWRIANDLRGSVDGWDFKSYVLGFLFYRFISENLTDYVNATEREAIIAEGGTPE 67

Query: 59  ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIA------ 105
                 Y      + +      V    F+         + +   +  NL   ++      
Sbjct: 68  EAAAFDYATLSNEDAEAARDGIVKEKGFFIRPSDLFGNVRAQAASDENLNETLSYAFRFI 127

Query: 106 -------SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
                      + + +F+D D +ST  +L     ++   L KI      + L        
Sbjct: 128 ENSARGSGSESDLRGLFDDVDVNST--KLGNTVAQRNAKLVKIMDAIGDLPLEHGAAQID 185

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   +F TP++V  +   L LD            +  +YDP 
Sbjct: 186 AFGDAYEYLMTMYASSAGKSGGEFYTPQEVAEVLATLALDGRSD--------VTRVYDPC 237

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L      +                GQE+   T+ +C   M +  +        +
Sbjct: 238 AGSGSLLLKFAKLL-------GPSSSRQYFGQEINLTTYNLCRINMFLHDVNF-----SN 285

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++      + F   +SNPP+  KW       + +       RF P   L  
Sbjct: 286 FDIALGDTLTEPAHWDDQPFDAIVSNPPYSTKWVG-----KDDIALINDPRFAPAGVLAP 340

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S   + F MH+ + L       G AAIV     L+ G A   E +IRR+L+EN+ + A+
Sbjct: 341 KSKADLAFTMHMLHWLAED----GTAAIVEFPGVLYRGAA---EGKIRRYLVENNFVHAV 393

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP DLFF T IAT + +L   + +     V  ++A+        EG K R +  + ++
Sbjct: 394 IQLPPDLFFGTTIATCIIVLKKARPDHS---VLFVDASAECV---REGNKNR-LTAENQQ 446

Query: 451 QILDIYVSRENGKFSRMLDYRT 472
           +IL +   R+       L    
Sbjct: 447 RILFLVSERQAVDHVAALVSID 468


>gi|154490803|ref|ZP_02030744.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC
           43184]
 gi|154088551|gb|EDN87595.1| hypothetical protein PARMER_00720 [Parabacteroides merdae ATCC
           43184]
          Length = 862

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/500 (20%), Positives = 190/500 (38%), Gaps = 67/500 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEP---TRSAVREKY 59
           +   LAN IW +A  +    +  ++   IL     + L       L+    T   +    
Sbjct: 2   NKQQLANKIWASANKMRSKIEANEYKDYILGLIFYKFLSDNEVNYLKSIGWTDEDIVTLV 61

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIASF----SDNAK 112
                    +          ++   +    +     S  +  +L   + SF    S N +
Sbjct: 62  ENHEDQEAVMMMEYCRNNIGYFIEYKNLFGTWLKPNSEFSVADLSGALNSFDRLISPNYR 121

Query: 113 AIFED-FD-FSSTIARLEKAGL-----LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            ++E+ F    + +++L +        L  + K    I          V+  +YE+LI  
Sbjct: 122 HVYENVFKTLQAGLSKLGENTTSQTRALKNLIKLIKDIPTDGS-QDYDVLGYVYEYLISN 180

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   + A +F TP +V  L + ++ +      K        +YDPT G+G  L     
Sbjct: 181 FAANAGKKAGEFYTPHEVAILMSEIVAEHHKNKDKIE------IYDPTSGSGSLLITIGK 234

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V   G H +    +  + QEL+  T+ +    +++R ++ D       N +   +L +D
Sbjct: 235 SV---GRHIEDKNKVKYYAQELKENTYNLTRMNLVMRGIKPDNI-----NTRCADSLEED 286

Query: 286 LF---------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                              +SNPP+ ++W+ +   ++   K+        G+   S    
Sbjct: 287 WPLQTDGGDIGKPLYVDAVVSNPPYSQQWDANDRELDARFKD-------YGVAPKSKADY 339

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG---SGESEIRRWLLENDLIEAIVAL 393
            FL+H  + L+      G   IVL    LF G A     GE +IRR L+E + I+AI+ L
Sbjct: 340 AFLLHELHHLKPD----GILTIVLPHGVLFRGDADENSEGEGKIRRNLIEKNNIDAIIGL 395

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T I T + +L   K       V +I+A+  +        K   + +   ++I 
Sbjct: 396 PANIFFGTGIPTLIMVL---KQHRDNDDVLIIDASKGFVKE----GKNNKLRECDIKRIA 448

Query: 454 DIYVSRENGK-FSRMLDYRT 472
           D    R+    +SR +    
Sbjct: 449 DTVRERKTIPGYSRTVSRDE 468


>gi|303252525|ref|ZP_07338688.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307247274|ref|ZP_07529323.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302648493|gb|EFL78686.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306856247|gb|EFM88401.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 517

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/487 (24%), Positives = 200/487 (41%), Gaps = 69/487 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61
              A L   IW+ A ++ G     DF + +L     R +       +E    +++    +
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 62  FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
               NI L  E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
           S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     +  + YE
Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L
Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     D              GQE+   T+ +    M +  +  D       +I  G 
Sbjct: 234 LQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGD 282

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL K  F   + F   +SNPP+  KW  D D            RF P   L   S     
Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 338 FILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++ 
Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFS 443

Query: 458 SRENGKF 464
            + +  +
Sbjct: 444 DKADVDY 450


>gi|307249502|ref|ZP_07531490.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858495|gb|EFM90563.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 517

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/495 (24%), Positives = 204/495 (41%), Gaps = 70/495 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61
              A L   IW+ A ++ G     DF + +L     R +       +E    +++    +
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 62  FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
               NI L  E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
           S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     +  + YE
Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L
Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     D              GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQFDDHIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGN 282

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL K  F   + F   +SNPP+  KW  D D            RF P   L   S     
Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWIGDGDPT-----LINDERFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 338 FILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  KT+    K Q I+A+ ++    N       + D+   +I+ ++ 
Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNELTDEHIAEIIKLFS 443

Query: 458 SRENGKF-SRMLDYR 471
            + +     +M+D +
Sbjct: 444 DKADVDHLVQMVDNQ 458


>gi|300958237|ref|ZP_07170387.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 175-1]
 gi|300315090|gb|EFJ64874.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 175-1]
          Length = 518

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|150389394|ref|YP_001319443.1| type I restriction-modification system, M subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949256|gb|ABR47784.1| type I restriction-modification system, M subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 858

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/607 (19%), Positives = 216/607 (35%), Gaps = 87/607 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------------RSA 54
           ++  +   +W+ A +L G    + +   +L     + L      T            +  
Sbjct: 3   TSEEIKRRLWEGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETFRITAGVEKVTEKEL 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFSD 109
           V E   A       LE  ++     +Y + EY            N E       + +F  
Sbjct: 63  VEEYIKAKKEYGEALEKMIQDV-LGYYVSPEYLYQIWLKDINDGNFEVQKVADSLNNFER 121

Query: 110 NA---------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155
           +          K +F       T   L     E++  +  +   FS + +        ++
Sbjct: 122 SIVSSGEVNDFKGLFSSSTLDLTDTALGSNLHERSNNIKALILLFSDLNMV-ALQKGDIL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI +F  E  + A +F TP  V  +   ++              I+++YDPT G
Sbjct: 181 GDAYEYLIGQFAMESGKKAGEFYTPHRVSEVMAQIVA---------KTTEIKSIYDPTVG 231

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L     H+            L  +GQE    T+ +    +L+  +  +        
Sbjct: 232 SGSLLLTVKKHL-----SKDRQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKMT----- 281

Query: 276 IQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
           I+ G TL  D            +F   + NPP+  +         K        RF  G 
Sbjct: 282 IKNGDTLGNDWPEDPENPNEGVQFDAVVMNPPYSAQN------WNKAGLKVSDPRFEIGG 335

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S G   FL+H    L       G   IVL    LF G   S E EIR+ L++ + 
Sbjct: 336 TLPPDSKGDYAFLLHGLYHLGTK----GTMGIVLPHGVLFRG---SSEGEIRKKLIDKNQ 388

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+A++ LP++LF  T I   + IL  +K       V +I+A++ +  +     K+ ++ +
Sbjct: 389 IDAVIGLPSNLFTNTGIPVAIIIL--KKNRNISDPVLMIDASNNFIKV----GKQNVLQE 442

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG---LARLEADI 502
               QI+D+Y+S++    FS +   +        +  P  +  + +       A L   I
Sbjct: 443 RDIAQIVDVYISKDEIAGFSHLACLKEIIQNEYNMNIPRYVQSLEEDIAHDVDAHLFGGI 502

Query: 503 TWRKLSPLH--QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV-KASKSFIVA 559
               ++ L        ++L+  +++I P         + +     K   +   SK   V 
Sbjct: 503 PAENINELKILHELVPEVLEQSIEEIRPGYVRLKNSIKEMTDTVLKHESILSLSKELKVE 562

Query: 560 FINAFGR 566
                 +
Sbjct: 563 ITEYISK 569


>gi|300819089|ref|ZP_07099292.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 107-1]
 gi|300528389|gb|EFK49451.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 107-1]
          Length = 518

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|187477055|ref|YP_785079.1| type i restriction enzyme EcoR124II M protein [Bordetella avium
           197N]
 gi|115421641|emb|CAJ48151.1| type i restriction enzyme EcoR124II M protein [Bordetella avium
           197N]
          Length = 519

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/490 (24%), Positives = 190/490 (38%), Gaps = 66/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVRE 57
           MT      A+L   IW  A D+ G     DF + +L     R +            A  +
Sbjct: 1   MT-SNEQRAALQRKIWDIANDVRGAVDGWDFKQYVLGALFYRFISENFIDYITGGDASMD 59

Query: 58  KYLAFGGSN---IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--- 111
                          +  +K  GY  Y  S+  ++   + NT  NL + +A+        
Sbjct: 60  YAAMPDNDENIAAAKDDAIKTKGYFIY-PSQLFVNVAANANTNENLNTDLANIFAAIEAS 118

Query: 112 -------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
                  + I   F DF +T  RL     +K   L K+ K  + ++          +  +
Sbjct: 119 ANGYPSERDIKGLFADFDTTSNRLGNTVKDKNDRLSKVLKRVAELDFGGFDASHIDLFGD 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G
Sbjct: 179 AYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H                 GQE+   T+ +    M +  +  D       NIQ
Sbjct: 231 SLLLQAKKHFDQHLIEDG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIQ 279

Query: 278 QGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL +  F   K F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 280 LGNTLIEPHFGEDKPFDAIVSNPPYSVKWIGGDDPT-----LINDERFAPAGVLAPKSKA 334

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L       GRAAIV      + G A   E +IR++L++N+ +E +++L 
Sbjct: 335 DFAFVLHALNYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLA 387

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T IA  + +L+  K +      Q I+A+ L+    N      ++ D    QI+ 
Sbjct: 388 PNLFYGTTIAVNILVLAKNKKDTTT---QFIDASGLFKKETN----NNVLLDSHIEQIMA 440

Query: 455 IYVSRENGKF 464
           ++ S++N   
Sbjct: 441 VFDSKDNVDH 450


>gi|319902373|ref|YP_004162101.1| type I restriction-modification system, M subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417404|gb|ADV44515.1| type I restriction-modification system, M subunit [Bacteroides
           helcogenes P 36-108]
          Length = 515

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/485 (22%), Positives = 194/485 (40%), Gaps = 64/485 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----CALEPTRSAVREKYLA 61
                L + IWK A ++ G     DF + +L     R +       +E    ++    ++
Sbjct: 5   KQRDELQSTIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTDYIEGGDDSINYANMS 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD----------- 109
                I+++         F   S+  ++   S NT  NL + +A+ F+            
Sbjct: 65  DDVITIEIKDDAIKTKGYFIYPSQLFVNIAKSANTNPNLNTDLAAIFNAIEGSANGYPSE 124

Query: 110 -NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162
            + K +F   DF +T  RL     EK   L  + K    ++L         +  + YE L
Sbjct: 125 HDIKGLFA--DFDTTSNRLGNTVEEKNKRLAAVIKGVECLDLGNFEDNKIDLFGDAYEFL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP++V  L   L L    ++ K        +YDP CG+G  L  
Sbjct: 183 ISNYAANAGKSGGEFFTPQNVSKLIAQLALSGQTSVNK--------IYDPACGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A                    GQE+   T+ +    M +  +  D       +I  G TL
Sbjct: 235 AKKQFDAHLIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIALGDTL 283

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
               +  ++ F   +SNPP+   W    D            RF P   L   S     F+
Sbjct: 284 INPQYGDEKPFDAIVSNPPYSVNWVGSDDPT-----LINDDRFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++LP +LF+
Sbjct: 339 LHALSYL----SARGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IA  + +LS  KT+    K Q I+A+        +     ++ D    +I+D++  +
Sbjct: 392 GTSIAVNILVLSKHKTD---TKTQFIDASG--EEFFKKETNNNVLTDRHIAKIIDLFNKK 446

Query: 460 ENGKF 464
           E  ++
Sbjct: 447 EPVEY 451


>gi|288457860|ref|YP_003422728.1| type I restriction-modification system, M subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|285026835|gb|ADC33925.1| type I restriction-modification system, M subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 515

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 112/489 (22%), Positives = 186/489 (38%), Gaps = 63/489 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT      A+L   IW  A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MT-AQAQRAALQRKIWDIANDVRGSVDGWDFKQYVLGTLFYRFISENFAAYIEAGDESID 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-------------LESYIA 105
           Y A   + I  +          Y      L    + +   N             +ES   
Sbjct: 60  YAALSDNVITDDIKDDAIKTKGYFIYPSQLFANVADDANTNDSLNTDLARIFTAIESSAN 119

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            +  + + I   F DF +T  RL     EK   L K+ K  + ++          +  + 
Sbjct: 120 GY-PSEQDIRGLFADFDTTSTRLGNTVTEKNSRLAKVLKRVAELDFGDFHNSQIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   L +     + K        +YDP CG+G 
Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQKKVNK--------IYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     +              GQE+   T+ +    M +  +  D       NIQ+
Sbjct: 231 LLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQR 279

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL++  F   + F   +SNPP+  KW    D            RF P   L   S   
Sbjct: 280 GDTLTQPHFQDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L    +  GRAAIV      +   A   E +IR++L++N+ +E ++AL +
Sbjct: 335 FAFVLHALSYL----SAKGRAAIVCFPGIFYRDGA---EKKIRKYLVDNNYVETVIALAS 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T IA  + +L+  KT      +Q I+A+        +     ++ D    ++++I
Sbjct: 388 NLFYGTTIAVTILVLAKNKTHAA---IQFIDASG--EEFFKKATNTNLMTDHHIARVIEI 442

Query: 456 YVSRENGKF 464
           +  +E+   
Sbjct: 443 FDRKEDVDH 451


>gi|215489628|ref|YP_002332059.1| predicted type I restriction-modification enzyme M subunit
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215267700|emb|CAS12158.1| predicted type I restriction-modification enzyme M subunit
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 518

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGNFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTNVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     +              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|295136495|ref|YP_003587171.1| type I restriction-modification system DNA methylase [Zunongwangia
           profunda SM-A87]
 gi|294984510|gb|ADF54975.1| type I restriction-modification system DNA methylase [Zunongwangia
           profunda SM-A87]
          Length = 540

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/492 (18%), Positives = 180/492 (36%), Gaps = 69/492 (14%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58
           M + T  A  +    +WK A +L G      +   ILP   L+ +    E  +  +++K 
Sbjct: 1   MAKNTTKADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISERYEMRKDEIKKKL 60

Query: 59  ------YLAFGGSNID---LESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---------- 99
                 Y        +    +    ++   +    + +   L     ++N          
Sbjct: 61  NDQTSDYYTLDEEEQNYVLEDPDEYLSKNVYIIPEKATFQYLQDNAEQDNIKVLVDEAFD 120

Query: 100 -LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSN 157
            L+  +A+   + K I       S +     A  +  +    S  +L         ++  
Sbjct: 121 ILDETLAANRPDLKGILPRIFVKSQLT----AKQVAGLINLLSNPKLSEKENPDSDILGR 176

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+ I +F      GA  F TP  +V L   L+                 ++D  CG+G
Sbjct: 177 VYEYYIGKFAIAEGSGAGQFFTPGSIVRLLVELI-----------EPYEGKIFDAACGSG 225

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G    ++  +   G        +  +GQE    T  +C   + +R L  D        ++
Sbjct: 226 GMFVQSLKFLQAHGGD---KKNISIYGQERYDGTLRLCKMNLALRDLSFD--------VR 274

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSM 336
            G +L +D F   +  + + NPPF       +D         G    F        + + 
Sbjct: 275 LGDSLLQDKFPDLKADFIIVNPPFNVSQWHPEDLPENDPRLFGPKEEF----TTDGNANY 330

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +++    + L       G AA+V+++  + +     GE  +R+ ++E ++++ IV LP  
Sbjct: 331 MWMQTFWHHLSDK----GTAAVVMANGAMTSNNK--GEKNVRQLMVEKNMVDCIVRLPDK 384

Query: 397 LFFRTNIATYLWILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LF  T I   ++ILS  +        +R G++  I+ + + T       K R+ N+    
Sbjct: 385 LFLTTGIPACIFILSKNRDGKDGIHRKRTGEILFIDTSKMGTMESR---KLRVFNEQDIN 441

Query: 451 QILDIYVSRENG 462
           +I D Y +  N 
Sbjct: 442 KITDTYHAWRND 453


>gi|300821375|ref|ZP_07101523.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 119-7]
 gi|331680405|ref|ZP_08381064.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
 gi|300526264|gb|EFK47333.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 119-7]
 gi|331071868|gb|EGI43204.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
          Length = 518

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|323182016|gb|EFZ67427.1| type I restriction-modification system, M subunit [Escherichia coli
           1357]
          Length = 518

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 120/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVATKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEKIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|261491601|ref|ZP_05988184.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261494961|ref|ZP_05991430.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261309370|gb|EEY10604.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312727|gb|EEY13847.1| putative type I restriction-modification system methyltransferase
           subunit [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 515

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 125/550 (22%), Positives = 210/550 (38%), Gaps = 67/550 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IW+ A ++ G     DF + +L     R +            E   Y A+ 
Sbjct: 5   QQRAELHRQIWQIANEVRGAVDGWDFKQYVLGSLFYRFISENFSAYIEQGDESIDYAAYS 64

Query: 64  GSNIDL----ESFVKVAGYSFYNTSEY----------SLSTLGSTNTRNNLESYIASFSD 109
              ID     E  +K  GY  Y +  +          +   +   +   ++E+    F  
Sbjct: 65  DEEIDAFGIKEDAIKSKGYFIYPSQLFKNVVKNANTNNNLNIELADIFADIEASAVGFDS 124

Query: 110 NAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162
             K I   F DF +   RL     +K   L  + K    +           +  + YE+L
Sbjct: 125 E-KDIKGLFADFDTKSNRLGNTVEDKNKRLAAVLKGVESLNFGDFAENQIDLFGDAYEYL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + S   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L  
Sbjct: 184 ISNYASNAGKSGGEFFTPQNVSKLIAQLALYGQSAVNK--------IYDPACGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A     D              GQE+   T+ +    M +  +  D       +I+ G TL
Sbjct: 236 AKKQFDDHLIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----HIELGDTL 284

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
                   + F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 285 INPKLKDDKPFDAIVSNPPYSIKWIGSDDPT-----LINDERFAPAGILAPKSKADFAFI 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  N L    +  GRAAIV      +   A   E +IR++L+E +++E+++AL  +LF+
Sbjct: 340 LHALNYL----SAKGRAAIVTFPGIFYRSGA---EQKIRQYLIEQNVVESVIALSANLFY 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+IAT + +LS  KT+    K Q I+A+DL+    N      ++ D+   QIL ++  +
Sbjct: 393 GTSIATNILVLSKHKTD---TKTQFIDASDLFKKETN----NNVLTDEHIAQILKLFADK 445

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            + + F++ +D R        +     +     +  +   E +   RK +          
Sbjct: 446 ADVEHFAKSVDNRQIAENEYNLAVSSYVEAKDTREVINITELNKEIRK-TVAKIDRLRAD 504

Query: 519 LKPMMQQIYP 528
           +  ++ +I  
Sbjct: 505 IDAIVAEIEQ 514


>gi|302668597|ref|YP_003833045.1| type I restriction modification system M subunit HsdM [Butyrivibrio
           proteoclasticus B316]
 gi|302397561|gb|ADL36463.1| type I restriction modification system M subunit HsdM [Butyrivibrio
           proteoclasticus B316]
          Length = 531

 Score =  275 bits (704), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/583 (17%), Positives = 208/583 (35%), Gaps = 88/583 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------PTRSAV 55
           +  L   +W  A+ L G     ++   +L     + L  +                    
Sbjct: 4   SKDLLAVLWSGADVLRGKMDANEYKTYLLGLVFFKYLSDSYLAKVYDLLNDEEPENLDDA 63

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE-SYIASFSDNAKA 113
           ++ Y     S+       ++     Y      + +++ +    NN     + S  +  + 
Sbjct: 64  QKAYEEAMKSDDSEALLEELKDSLHYTLDPDLTYTSILNAAKNNNFNREKLQSAFNRIQE 123

Query: 114 IFEDFD--FSST---IARLEKAG-----LLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             E F+  F+       RL          +  + K     +L        V+ N YE+LI
Sbjct: 124 SDELFNSLFADVDLYSNRLGTGDTKQSATIADVIKVLEDADLIHAKGD--VLGNAYEYLI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP     +   + +   +            +YDP  G+G  +   
Sbjct: 182 GQFASETGKKAGEFYTPHGPAQILCRIAMLGQEE------KKGLQVYDPCMGSGSLMLSC 235

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           M++  +       P  +  +GQEL P T+ +    M +  +  +     +++++ G TL 
Sbjct: 236 MHYSKE-------PDYIKYYGQELMPSTYNLARMNMFLHGVLPE-----NQHLRNGDTLD 283

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            D  T +   F     NPP+   W   +   + E      G     L   S     FL+H
Sbjct: 284 ADWPTDEETEFDVVTMNPPYSANWSAAEGFKQDERFMDYGGV----LAPKSKADYAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G  AIVL    LF G     E  IR  LL+N  I A++ LP+++F+ T
Sbjct: 340 GFYHLKP----NGTMAIVLPHGVLFRGA---SEGAIREILLKNGSIYAVIGLPSNMFYNT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +       V  I+A+  +   +    K+ ++ ++    +L++Y +R++
Sbjct: 393 SIPTCIIVLKKHREGR---DVLFIDASQHFEKEK----KQNVMKEEHIDHVLELYKNRQS 445

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            +                     + +++     + + + ++   +     +      LK 
Sbjct: 446 VE---------------------KEAYLASFEDIEKNDFNLNIPRYVDTSEEEEQIDLKA 484

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           +  ++         +KE+  S      ++  S   I A +   
Sbjct: 485 LSSELK---NTNKEIKEANTSLLGMMNELVFSSDDIKAAMTEL 524


>gi|307245102|ref|ZP_07527195.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254057|ref|ZP_07535904.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258513|ref|ZP_07540250.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306853991|gb|EFM86203.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862982|gb|EFM94929.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867417|gb|EFM99268.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 515

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 119/487 (24%), Positives = 199/487 (40%), Gaps = 69/487 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61
              A L   IW+ A ++ G     DF + +L     R +       +E    +++    +
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 62  FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
               NI L  E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 SDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
           S+N   I E F DF +T  RL     +K   L  + +  +G+     +     +  + YE
Sbjct: 124 SEN--DIKELFADFDTTSNRLGNTVEDKNKRLTAVLQGVAGLPFGRFEDNQIDLFGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L
Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     D              GQE+   T+ +    M +  +  D       +I  G 
Sbjct: 234 LQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGD 282

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL K  F   + F   +SNPP+  KW  D D            RF P   L   S     
Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWVGDGDPT-----LINDERFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 338 FILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++ 
Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFG 443

Query: 458 SRENGKF 464
            + +   
Sbjct: 444 DKADVDH 450


>gi|239621716|ref|ZP_04664747.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515591|gb|EEQ55458.1| HsdM [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 855

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/497 (21%), Positives = 186/497 (37%), Gaps = 70/497 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----CALEPTRSAVREKYLAF 62
           +   LA  IW++A  +    +  ++   IL F   + L       L        +     
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIARLRAEDWGAEDLKGLD 61

Query: 63  GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113
                 ++    + GY   YN    +        T  ++   +++F  N           
Sbjct: 62  ENDAETVQYVRDLCGYFISYNNLFSTWIASQGDFTIADVRDALSAFERNIDPARKRVFVG 121

Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           IF+     + +++L      ++  +  +      I           +  IYE+LI  F S
Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAVRDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA
Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D   
Sbjct: 233 RRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284

Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                     +        +SNPP+ + WE          + GE  RF  G+   S    
Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L       G  AIVL    LF G     E  IRR L+EN  I+AI+ LP +
Sbjct: 337 AFLLHDLYHLRDD----GIMAIVLPHGVLFRGGE---EGAIRRNLVENHHIQAIIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +L   + +     V +++A+  +T       K   +     ++I+D  
Sbjct: 390 IFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFTKE----GKNNKLRASDIKRIVDAV 442

Query: 457 -VSRENGKFSRMLDYRT 472
             +R+  KFSR++    
Sbjct: 443 TGNRDIDKFSRLVSIDE 459


>gi|306815513|ref|ZP_07449662.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Escherichia coli NC101]
 gi|305851175|gb|EFM51630.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Escherichia coli NC101]
          Length = 518

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +            +   Y A  
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSHMENGDDSICYAALD 64

Query: 64  G---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
               ++   +  ++  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DGIITDDIKDDAIRTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|317011670|gb|ADU85417.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           SouthAfrica7]
          Length = 817

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/597 (20%), Positives = 219/597 (36%), Gaps = 92/597 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF---SDNAKAIFEDFDF 120
             N      +   G  FY   E  L+  G     + L   IA     +D  K   +  DF
Sbjct: 45  AKNDPDSDIIVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAEQNDLLKGAIDSVDF 100

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +   
Sbjct: 101 NDN-TKLGEGKAMMDTLSNLIKIFANLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKG 159

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V        L         +    +T+YDPTCG+G  L  A +   + G    
Sbjct: 160 QFYTPSEVSL------LLSLLLEIDGNTRQDKTIYDPTCGSGSLLLKASSLAGENG---- 209

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG---- 289
               L  +GQE +  T A+C   M++           + +I +G  STLS   F      
Sbjct: 210 ----LTIYGQEKDNSTTALCKMNMVLHN-------SATADIAKGGSSTLSNPHFLENGML 258

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346
           K F Y ++NPPF  K   D  +++ + K   +    RF  G P   +G   FL+H+   L
Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVIDDNFNRFEDGTPPEKNGDFAFLLHIIKSL 318

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ A++L    LF G A   E  IR+ +L    I+ ++ L  +LF+ T+I   
Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGVIRKNILTKGYIKGVIGLAPNLFYGTSIPAC 371

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + +L       R+G V +I+A+  +   + +G K R + +   ++++D + +++   +  
Sbjct: 372 VIVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFKAKKEIPYYS 426

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            +                     +    ++  + ++   +     Q    D+   +    
Sbjct: 427 KM---------------------VSLEEISANDYNLNIPRYIVAEQELEKDLFALINSHK 465

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
             Y         +      K LK    K        A   +      +   + E+  
Sbjct: 466 ANYLPKNEIEAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKDLITESLEYRA 522


>gi|307260748|ref|ZP_07542437.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869587|gb|EFN01375.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 516

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/487 (24%), Positives = 202/487 (41%), Gaps = 69/487 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61
              A L   IW+ A ++ G     DF + +L     R +       +E    +++    +
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 62  FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
               NI L  E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
           S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     +  + YE
Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L
Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A     D              GQE+   T+ +    M +  +  D       +I  G+
Sbjct: 234 LQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DITLGN 282

Query: 281 TLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSML 337
           TL K  F   + F   +SNPP+  KW  D D            RF P   L   S     
Sbjct: 283 TLLKPQFGDSKPFDAIVSNPPYSVKWIGDGDPT-----LINDERFAPAGVLAPKSKADFA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H+ + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +L
Sbjct: 338 FILHVLSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAPNL 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +IL ++ 
Sbjct: 391 FFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEILKLFS 443

Query: 458 SRENGKF 464
            + +  +
Sbjct: 444 DKADVDY 450


>gi|300214622|gb|ADJ79038.1| Type I restriction-modification system methylation subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 529

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 191/481 (39%), Gaps = 71/481 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-------LEPTRSAVREKYLAF 62
           +L   +   A  L       ++    L     + L  +       L   ++   E+    
Sbjct: 7   TLERSLDNAANVLRSKMDANEYKNYTLGTIFYKYLSDSMLYYVAELLEEKNISLEEAQKL 66

Query: 63  GGSNIDLESFVKVAGYSF------YNTSEYSLSTLGS-----TNTRNNLESYIASFSDNA 111
              N D +  ++     F       NT    L ++ +     +   +   S I S     
Sbjct: 67  YEENQDDQYLIEELDIKFNYVIEAKNTYTNILKSINNHTFQVSQLGDAFNS-IESQGKEF 125

Query: 112 KAIFEDFDFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + +F+D+D  S   RL       +  + ++      +E+     P+  + N YE+LI++F
Sbjct: 126 EGLFDDYDLYSK--RLGNTAQKQSDTISEVLSAIGKLEIV--KTPEDTLGNAYEYLIKQF 181

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE  + A +F TP+ V  L   L L   D           T+YDPT G+G  L +   +
Sbjct: 182 ASESGKKAGEFYTPQKVSRLLARLTLVDKD------YTDGMTVYDPTMGSGSLLLNFRKY 235

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V       +    +   GQE+   T+ +    M++  ++      +++ ++   TL +D 
Sbjct: 236 V-------EHSERITYFGQEINTSTYNLARMNMILHHVD-----VVNQKLRNNDTLDEDW 283

Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHL 342
              +   F   + NPP+  KW  +           +  RF     LP  S     FL+H 
Sbjct: 284 PVEEITNFDAVVMNPPYSHKWSANAGF-------KDDPRFSAYGVLPPKSKADYAFLLHG 336

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      G  AIVL    LF G A   E +IR+ LLEN  I+A++ LP +LF+ T+
Sbjct: 337 YYHLKHS----GVMAIVLPHGILFRGAA---EGKIRKKLLENGAIDAVIGLPANLFYNTS 389

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I T + +L   K +     V  I+A+  +  ++     +  + D+   +IL  Y  R++ 
Sbjct: 390 IPTTIVVLKKDKQDR---DVLFIDASKNFKKVKT----QNELRDEDVEKILTTYKERKDI 442

Query: 463 K 463
            
Sbjct: 443 D 443


>gi|187736904|ref|YP_001816642.1| HsdM [Escherichia coli 1520]
 gi|172051486|emb|CAP07828.1| HsdM [Escherichia coli]
          Length = 520

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/483 (24%), Positives = 196/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 7   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 67  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L 
Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSRLIAQLAMHGQTSVNK--------IYDPAAGSGSLLL 235

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     +              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 236 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445

Query: 459 REN 461
           +E+
Sbjct: 446 KED 448


>gi|225076051|ref|ZP_03719250.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens
           NRL30031/H210]
 gi|224952611|gb|EEG33820.1| hypothetical protein NEIFLAOT_01083 [Neisseria flavescens
           NRL30031/H210]
          Length = 871

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 111/488 (22%), Positives = 192/488 (39%), Gaps = 59/488 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-SAVREKYLAFGG- 64
           +   LA  IW++A  +    +  ++   IL F   + L   LE        EK       
Sbjct: 2   NKQQLAAKIWQSANKMRSKIEANEYKDYILGFIFYKFLSDKLEKFALEQGLEKSNFADEL 61

Query: 65  ---SNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFE 116
              +   +    +  GY   Y     +    GS     ++ + +++FS N       +F+
Sbjct: 62  TESNGELVNHVKRNLGYFISYEHLFSTWLAQGSDFNIAHVRTAMSAFSRNIADNYTAVFD 121

Query: 117 DF--DFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEV 170
                  S +++L    +     +   F  I   P        V+  IYE+LI  F +  
Sbjct: 122 GIFKTLESGLSKLGDTAVSQTNAVKDLFVLIADIPMDGKQGYDVLGFIYEYLISMFAANA 181

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++ D      +       ++YDPT G+G  L +  + VA  
Sbjct: 182 GKKAGEFYTPHEVSLLMSEIIADHLKDREEI------SIYDPTSGSGSLLINIGHSVAKH 235

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDLFT 288
                    +  + QEL+  T+ +    +++R +       L  NI  +   TL  D   
Sbjct: 236 LKSA---DSIKYYAQELKENTYNLTRMNLVMRGI-------LPSNIFTRNADTLEDDWPL 285

Query: 289 GKRFHY---CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                Y    +SNPP+ + W       +  +K     RF  G+   +     FL+H    
Sbjct: 286 EGEPLYLDAVVSNPPYSQPWNPKDKEGDIRYK-----RF--GVAPQAKADFAFLLHDLFH 338

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G   IVL    LF G     E +IR+ L+E + I+AI+ LP ++FF T I T
Sbjct: 339 LKPD----GIMTIVLPHGVLFRGGE---EEKIRKNLIEYNHIDAIIGLPANIFFGTGIPT 391

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + +L   + E  R  V +I+A+  +  +     K   +     ++I+D    R    KF
Sbjct: 392 IIIVL---RQERERNDVLMIDASKHFIKV----GKNNHLQASDIKRIVDCVTHRRELPKF 444

Query: 465 SRMLDYRT 472
           SR++    
Sbjct: 445 SRIVPKAE 452


>gi|18202542|sp|Q47163|T1MP_ECOLX RecName: Full=Type I restriction enzyme EcoprrI M protein;
           Short=M.EcoprrI
 gi|450688|emb|CAA53205.1| hsdM gene of EcoprrI [Escherichia coli]
          Length = 520

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 7   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 67  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 235

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 236 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445

Query: 459 REN 461
           +E+
Sbjct: 446 KED 448


>gi|315652290|ref|ZP_07905282.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
 gi|315485413|gb|EFU75803.1| type I restriction-modification system DNA-methyltransferase
           [Eubacterium saburreum DSM 3986]
          Length = 525

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/494 (22%), Positives = 192/494 (38%), Gaps = 71/494 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKY 59
              +   A L   IW  A+D+ G     DF + IL     R +   +     ++      
Sbjct: 6   NRESKQRAELHRKIWAIADDVRGAVDGWDFKQYILGNLFYRFISENITEFFNKAEHEAGD 65

Query: 60  LAFGGSNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTR--------NNLESYIA 105
            AF  + I  E   +      V    F+         + +             N+ + I 
Sbjct: 66  TAFDYAKISDEEADRDFRPGTVEDKGFFILPSQLFENVVANAGNNENLNTDLANIFNAIE 125

Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153
             +      +  K +F+  D  +T  RL     EK   L  I K  + I+ +     D  
Sbjct: 126 GSAIGFLSEEAIKGLFK--DLDTTSDRLGATVVEKNKRLCDILKGIAEIDFNDFQSNDID 183

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+LI  + S   +   +F TP+ V  L   L++D   ++ K        +YDPT
Sbjct: 184 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTSINK--------VYDPT 235

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  +        +              GQE+      +    M +  +  +     +
Sbjct: 236 CGSGSLILQMKKQFEEHIIEEG------FFGQEINMTNFNLARMNMFLHNVNYN-----N 284

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G TL   L   ++ F   +SNPP+  KW  D D            RF P   L  
Sbjct: 285 FSIKRGDTLLNPLHNDEKPFDAIVSNPPYSIKWVGDGDPT-----LINDERFAPAGKLAP 339

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F+MH  + L       GRAAIV      +   A   E  IR++L++N+ I+ +
Sbjct: 340 KSYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---EKTIRQYLVDNNFIDCV 392

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T+IAT + +++  KTE    KV  I+A+  +    N      ++ +    
Sbjct: 393 IQLPENLFFGTSIATCVLVMAKNKTE---NKVLFIDASKEFKKETN----NNVLEEKNIE 445

Query: 451 QILDIYVSRENGKF 464
            IL+ +  R++ ++
Sbjct: 446 SILNTFRERKDKEY 459


>gi|15646013|ref|NP_208194.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2314576|gb|AAD08446.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 817

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/567 (21%), Positives = 220/567 (38%), Gaps = 76/567 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N +        G  FY   E  L+  G     + L   IA  +D    K + +  DF+
Sbjct: 45  ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIADQNELKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMMDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L         +    +++YDP CG+G  L  A +   + G     
Sbjct: 160 FYTPSEVSL------LSSLLLGIDANTRQDKSIYDPACGSGSLLLKASSLAGEKG----- 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290
              L  +GQE +  T A+C   M++           + +I +G  STLS  LFT +    
Sbjct: 209 ---LTIYGQEKDISTTALCRMNMILHN-------SATADIAKGGSSTLSNPLFTTENGML 258

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346
             F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L
Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   
Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           + +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +    +S
Sbjct: 372 VIVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNAYKEIPYYS 426

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKT----GLARLEADITWRKLSPLHQSFWLDILKP 521
           +M+           +  P  ++   +       L          K      + +  + K 
Sbjct: 427 KMVSLEEISANDYNLNIPRYIAAKPESEKDLFALINSHKASYLPKNEIKAYAPYFQVFKE 486

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTL 548
           +   ++     ES+     +    K L
Sbjct: 487 LKNTLFKKSDKESYYALKTECENIKEL 513


>gi|293417767|ref|ZP_06660389.1| type I restriction-modification system [Escherichia coli B185]
 gi|291430485|gb|EFF03483.1| type I restriction-modification system [Escherichia coli B185]
          Length = 518

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 119/483 (24%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    +I+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEKIMQVFAS 443

Query: 459 REN 461
           +++
Sbjct: 444 KKD 446


>gi|309797883|ref|ZP_07692264.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 145-7]
 gi|308118491|gb|EFO55753.1| type I restriction-modification system, M subunit [Escherichia coli
           MS 145-7]
          Length = 520

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 7   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 67  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 235

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 236 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445

Query: 459 REN 461
           +E+
Sbjct: 446 KED 448


>gi|212691979|ref|ZP_03300107.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855]
 gi|212665371|gb|EEB25943.1| hypothetical protein BACDOR_01474 [Bacteroides dorei DSM 17855]
          Length = 517

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/558 (19%), Positives = 216/558 (38%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E           
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +   + D     + A         ++   ++  S++        N    LE  +
Sbjct: 59  ITFKELWEMDDTDAVELQEEAKNQCLENIGYFIEPKFLFSSVIEAIKRKENILPILERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTADDKNTLVSNVLLALDDIDFGVEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A            I   +  +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRA----------AHIGNAVEIYGQEKNPTTYNLARMNMLLHDI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SNFKIENGDTLEWDAFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPR 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    + GG  A V     LF G A   E  IRR+L+E  + ++AI
Sbjct: 331 KTADYAFILHMIYHL----SDGGTMACVAPHGVLFRGNA---EGVIRRFLIEKKNYVDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + +L  +K  +    +  I+A+  +  ++     +  +  +  +
Sbjct: 384 IGLPANIFYGTSIPTCVLVL--KKCRKEDDNILFIDASKEFEKVKT----QNKLRPEHIK 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I+D Y  R+  + +S +   +        +  P R     ++     ++A +   K   
Sbjct: 438 KIVDTYRDRKEIEKYSHLATLQEIADNDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     ++  ++++ 
Sbjct: 497 AKRADLDKEIEGYLKELG 514


>gi|254932530|ref|ZP_05265889.1| type I restriction-modification system [Listeria monocytogenes
           HPB2262]
 gi|293584085|gb|EFF96117.1| type I restriction-modification system [Listeria monocytogenes
           HPB2262]
 gi|332310721|gb|EGJ23816.1| Type I restriction-modification system, M subunit [Listeria
           monocytogenes str. Scott A]
          Length = 858

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/494 (20%), Positives = 174/494 (35%), Gaps = 78/494 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------------SA 54
           ++  +   +W  A +L G    + +   +L     + L      T               
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETYKSIAGEGQLSEAEL 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103
           V +   A      +L+  ++     F        + L                  N E  
Sbjct: 63  VEKYAKARAVHGENLDKMIQSVLGYFVLPEYLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I  +  SD+ + +F       T   L     E++  +  + + F  + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +      +   L  +GQE    T+ +    +L+  +  +        +
Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVRPEKMS-----V 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
           + G TLS+D             F   + NPP+            K +      RF     
Sbjct: 283 KNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFEIAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I
Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP +LF  T I   + IL   +       V +I+A+  +  +     K+  + + 
Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRA--ISEPVLVIDASRNFIKV----GKQNELQEK 443

Query: 448 QRRQILDIYVSREN 461
              +I+D YV R  
Sbjct: 444 DIARIVDTYVERAE 457


>gi|317010094|gb|ADU80674.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori India7]
          Length = 817

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 119/596 (19%), Positives = 217/596 (36%), Gaps = 92/596 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             + +        G  FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 45  ARSNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDP CG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPACGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290
              L  +GQE +  T A+C   M++           + +I +G  STLS   FT +    
Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGFSTLSNPFFTTENGML 258

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346
             F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L
Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   
Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + +L       R+G V +I+A+  +   + +G K R + D   ++++D + + +      
Sbjct: 372 VIVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNAYKEIPHYS 426

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
            +                     +    ++  + ++   +     Q    D+        
Sbjct: 427 KM---------------------VSLEEISANDYNLNIPRYIAAKQESEKDLFALTNSHK 465

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
             Y         +      K LK    K        A   +      +   + E+ 
Sbjct: 466 ASYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKELIIQSSEYQ 521


>gi|331655788|ref|ZP_08356777.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
 gi|331046562|gb|EGI18651.1| type I restriction-modification system, M subunit [Escherichia coli
           M718]
          Length = 518

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 122/483 (25%), Positives = 195/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y A  
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYMEADDDSICYAALD 64

Query: 64  GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I     +  +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L         +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFTEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDK-----FDIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|237751421|ref|ZP_04581901.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
 gi|229372787|gb|EEO23178.1| type I restriction-modification system [Helicobacter bilis ATCC
           43879]
          Length = 534

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 114/492 (23%), Positives = 199/492 (40%), Gaps = 71/492 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-------------- 51
               +L + IWK  ++L G     DF   +L F   R +   L                 
Sbjct: 15  TQRTALHSTIWKIVDELRGSVDGWDFKMYVLGFLFYRFISENLAEHINANMRECGEIDFD 74

Query: 52  ----RSAVREKYLAFGGSNIDLESFVKVAGYSFYN---TSEYSLSTLGST--NTRNNLE- 101
                     K      + I+ + F  +    F N   T +   + L +T  N   N+E 
Sbjct: 75  YTHLSDEEIIKDNDIKENIINQKGFFIMPSELFINVLQTHKSDTTNLNATLSNVFRNIEY 134

Query: 102 SYIASFSDN-AKAIFEDFDFSSTIAR-----LEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           S I + S+N  K +F D D +S+        +++   LYK+ K  S ++L          
Sbjct: 135 SSIDTKSENDFKGLFNDIDVNSSANLGERSLIKRNERLYKVMKEISKLDLDYSDNAIDAF 194

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + Y  L+R +     +   +F TP++V HL   L+     ++ K        +YD  CG
Sbjct: 195 GDAYVCLMRMYAGSAGKSGGEFFTPQEVSHLLARLVSYGKQSVNK--------VYDSACG 246

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +   L      +       K       +GQE+ P ++ +C   M++  +        + +
Sbjct: 247 SSSLLLQFAKVL------GKNNVKNGFYGQEINPTSYNLCRINMILHNV-----GYENFD 295

Query: 276 IQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G T  +      + F   +SNPP+  KW  D + +          RF P   L    
Sbjct: 296 ISLGDTFLEPKHEDDEPFDAIVSNPPYSIKWAGDSNPL-----LINDPRFAPAGVLAPKF 350

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+MH+ + L       G  AI      L+ G A   E +IR++L++N+ I+ ++ 
Sbjct: 351 YADLAFVMHMLSWLSPS----GTCAIAAFPVVLYRGGA---EKKIRKYLVDNNFIDCLIQ 403

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP +LFF TNI T + +L   K   +  KV  I++++L++ + N    + I+  +    I
Sbjct: 404 LPPNLFFGTNIVTSIIVLKKNK---QNNKVLFIDSSELFSKVTN----KNILEINHIITI 456

Query: 453 LDIYVSRENGKF 464
           ++ Y  REN + 
Sbjct: 457 VEAYAKRENKEH 468


>gi|291289376|ref|YP_003517708.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Klebsiella pneumoniae]
 gi|290792337|gb|ADD63662.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Klebsiella pneumoniae]
          Length = 520

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/483 (24%), Positives = 196/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 7   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 67  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L 
Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLL 235

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     +              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 236 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+    KVQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 393 FGTTIAVNILVLSKHKTD---TKVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445

Query: 459 REN 461
           +E+
Sbjct: 446 KED 448


>gi|262039562|ref|ZP_06012861.1| type I restriction-modification system, M subunit [Leptotrichia
           goodfellowii F0264]
 gi|261746440|gb|EEY33980.1| type I restriction-modification system, M subunit [Leptotrichia
           goodfellowii F0264]
          Length = 526

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 117/506 (23%), Positives = 201/506 (39%), Gaps = 78/506 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC--------------- 46
           ++     + L   IW  A+++ G     DF + +L     R +                 
Sbjct: 8   SKEGIQRSELHRKIWAIADEVRGAVDGWDFKQYVLGILFYRFISENMVTFFNSAEHEAGD 67

Query: 47  -ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE---- 101
              + ++ +  E    F  + ++ + F  +    F N  +   +   + N   +L     
Sbjct: 68  LEFDYSKISDEEAERDFRPNTVEDKGFFILPSQLFENVVK---NAAKNENLNTDLANIFK 124

Query: 102 ----SYIASFSDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTV 150
               S I   S+N  K +FED D  +T  RL     EK   L  I    S I     +  
Sbjct: 125 SIEASAIGFASENDIKGLFEDVD--TTSNRLGGTVAEKNKRLTDILTGISEINFGKFEEN 182

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 + YE+LI  + S   +   +F TP+ V  L   L+++   ++ K        +Y
Sbjct: 183 DIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMEGKTSINK--------VY 234

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DPTCG+G  L        +              GQE+      +    M +  +  +   
Sbjct: 235 DPTCGSGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHNINYN--- 285

Query: 271 DLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
             + +I++G TL   L + ++ F   +SNPP+  KW  D D            RF P   
Sbjct: 286 --NFSIKRGDTLLNPLHSEEKPFDAIVSNPPYSIKWIGDGDPT-----LINDERFAPAGK 338

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     F+MH  + L       GRAAIV      +   A   E  IR++L++N+ I
Sbjct: 339 LAPKSYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---EQTIRKYLVDNNFI 391

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + ++ LP +LFF T+IAT + +++  KTE    KV  I+A+  +    N      I+ + 
Sbjct: 392 DCVIQLPENLFFGTSIATCILVMAKNKTE---NKVLFIDASKEFKKETN----NNILEEK 444

Query: 448 QRRQILDIYVSRENGKF-SRMLDYRT 472
               I++ + +R + ++ SR +D   
Sbjct: 445 NIENIVEEFKNRSDKEYFSRYVDKSE 470


>gi|163803500|ref|ZP_02197371.1| N-6 DNA methylase [Vibrio sp. AND4]
 gi|159172718|gb|EDP57568.1| N-6 DNA methylase [Vibrio sp. AND4]
          Length = 573

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/556 (17%), Positives = 191/556 (34%), Gaps = 94/556 (16%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----------- 56
              L + +W  AE L        +   +L    ++ +  A +  +  ++           
Sbjct: 9   LKELESKLWTAAEKLRSTLDAAQYKHAVLGLIFVKYVSDAFKLRQDEIKADLANPDHEYY 68

Query: 57  -------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                  E+ LA   +N             F+  +E     L     R    + +     
Sbjct: 69  LDPADFSEEELAEEIANELEVRDFYTEKNVFWLPTESRWQFLQDNGPRVIGGADLEIDGP 128

Query: 110 NAKAIFEDFD-----FSSTIARLEKAG--------------------LLYKICKNFSGIE 144
           N   + +          + +  +E+                       L ++    + I 
Sbjct: 129 NQSKVTKKITSVGHLIDNALEGIERENPTKLKGALNKSYSSLKIDQAKLNELINLIATIP 188

Query: 145 L-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             H D     ++ ++YE+++ +F     +    F TP  +V L   ++            
Sbjct: 189 FVHADLNSKDILGHVYEYMLGQFALAEGKRGGAFYTPASIVSLIVEMI-----------E 237

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-----PPILVPHGQELEPETHAVCVAG 258
                +YDP  G+GGF   +   +    +  ++        +  +GQE    T  +    
Sbjct: 238 PFEGRVYDPAMGSGGFFVQSEKFIERRANQKEVDPLTQKQKISIYGQEYNHTTWQLAAMN 297

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           M IR L+ D  ++ +      ST +       R  + ++NPPF  K             +
Sbjct: 298 MAIRGLDYDFGKEPA------STYTNVQHPDLRADFIMANPPFNMKEWNT-------GVD 344

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G P   + +  ++ H+   L      G +A ++ + S      + + E EIR
Sbjct: 345 DNDPRWIYGNPPSGNANFAWMQHMLYHLAPD---GSQALLLANGSM---SSSTNNEGEIR 398

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE----------ERRGKVQLINAT 428
             L+ENDL+E +VALP  LF  T I   +W L+  KT           +R+G+V  I+A 
Sbjct: 399 ASLIENDLVECMVALPGQLFTNTQIPACIWFLTKNKTARTDKAGRKLRDRKGEVLFIDAR 458

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-FGYRRI-KVLRPLRM 486
           +L           R    D  +++ D+Y + + G     + Y    G+ +   +    + 
Sbjct: 459 NLGYMKDRV---LRDFTRDDIQKVADLYHAWKTGIEVNGIAYEDQAGFCKSATLDEITKH 515

Query: 487 SFILDKTGLARLEADI 502
            F+L          ++
Sbjct: 516 DFVLTPGRYVGAAEEL 531


>gi|329963228|ref|ZP_08300965.1| type I restriction-modification system, M subunit [Bacteroides
           fluxus YIT 12057]
 gi|328528924|gb|EGF55864.1| type I restriction-modification system, M subunit [Bacteroides
           fluxus YIT 12057]
          Length = 517

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 215/558 (38%), Gaps = 75/558 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR-----SAV 55
           M+E       L + +W+ A  L G+   +DF    L F   + L   +E           
Sbjct: 1   MSEEL--QQKLRDQLWEVANRLRGNMSASDFMYFTLGFIFYKYLSEKIEKYANNALVDDE 58

Query: 56  REKYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGS-----TNTRNNLESYI 104
                 +   + D+    +           ++   ++  S++        N    LE  +
Sbjct: 59  ITFKELWEMDDTDVVELQEEVKNQCLENIGYFIEPKFLFSSVIEAIKWKENILPILERSL 118

Query: 105 ASFSDNA--KAIFEDF-----DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
               D+   +   EDF     D      +L     +K  L+  +      I+   +   +
Sbjct: 119 KRIEDSTLGQDSEEDFGGLFSDIDLASPKLGKTANDKNTLVSNVLLALDDIDFSVEASQE 178

Query: 153 RVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE++I +F +   + A +F TP++V  +   ++              +R +YD
Sbjct: 179 IDILGDAYEYMISQFAAGAGKKAGEFYTPQEVSRILAEIVSIGH--------QRLRNVYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +                 +GQE  P T+ +    ML+  +     R 
Sbjct: 231 PTCGSGSLLLRAASIGNAVD----------IYGQEKNPTTYNLARMNMLLHGI-----RF 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +  I+ G TL  D+F   +F   ++NPPF  +W         +  + + GR    L   
Sbjct: 276 SNFKIENGDTLEWDVFGDTQFDAVVANPPFSAEWSAADKFNTDDRFS-KAGR----LAPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
                 F++H+   L    N GG  A V     LF G A   E  IRR+L+E  + I+AI
Sbjct: 331 KTADYAFILHMIYHL----NEGGAMACVAPHGVLFRGNA---EGVIRRFLIEKKNYIDAI 383

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP ++F+ T+I T + ++  +K  +    +  I+A+  +  ++     +  +  +   
Sbjct: 384 IGLPANIFYGTSIPTCILVM--KKCRKEDDNILFIDASKEFEKVKT----QNKLRKEHID 437

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I+D Y  R+  + +S +   +        +  P R     ++     ++A +   K   
Sbjct: 438 KIVDTYRERKEIEKYSHLATLQEVADNDYNLNIP-RYVDTFEEEEPIDIKAVMAEIKELE 496

Query: 510 LHQSFWLDILKPMMQQIY 527
             ++     ++  ++++ 
Sbjct: 497 AKRAELDKEIEVYLKELG 514


>gi|269967979|ref|ZP_06182018.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269827415|gb|EEZ81710.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 919

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 113/586 (19%), Positives = 219/586 (37%), Gaps = 68/586 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLAF 62
           +   LA  IW++A  +    +  ++   IL F   + L       L        +     
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDTQVSFLIDQGMTQDDIKALS 61

Query: 63  GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFED 117
                 ++   +  GY   Y+    +     +    +N+   +++F    +   K +FE 
Sbjct: 62  EDDTETVDYIRREKGYFIAYDNLFSTWVDSSTEFDESNVRDALSAFNRLINKKHKKLFEG 121

Query: 118 F--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L     ++   +  +      I +  +     V+  IYE+LI +F +  
Sbjct: 122 IFTTLETGLSKLGETSGKRTKAISDLLHLIKAIPMTGNLGY-DVLGYIYEYLIEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + +         +        +YDPT G+G  L +  + V   
Sbjct: 181 GKKAGEFYTPHEVSLLMSEITAHELKHKDEIE------IYDPTSGSGSLLINIGSSV--- 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             + K    +  + QEL+  T+ +    +++R +  D         + G TL  D     
Sbjct: 232 AKYAKSKDDIKYYAQELKQSTYNLTRMNLIMRGILPDNITT-----RNGDTLEDDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ +KW+ +    +         RF  GL   +     FL
Sbjct: 287 ESNPQESYQPLYVDAVVSNPPYSQKWDPENKENDPR-----YARF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G   IVL    LF G     E EIR+ L+EN+ I+AI+ LP ++FF
Sbjct: 340 LHDLYHLKPD----GIMTIVLPHGVLFRGGE---EGEIRKQLIENNHIDAIIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   K +     V +I+A+  +        K   + D   ++I D  + R
Sbjct: 393 GTSIPTVILVL---KQKRENNDVLIIDASKHFVKE----GKNNKLQDSDIKRITDAVIHR 445

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ-SFWLD 517
           ++   FS+++  +T       +  P  +               +       +     + D
Sbjct: 446 QDNDKFSKVVSKKTIQENEYNLNIPRYVDSSPAAETWDLHATMLGGIPNREIAALKEYWD 505

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
            L  +   ++    ++       KS    T+ +      ++AFI A
Sbjct: 506 ALPELHSALFSAKSSDYSELAVEKSQVQTTIAL---HPQLLAFIEA 548


>gi|158522935|ref|YP_001530805.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511761|gb|ABW68728.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 680

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 121/650 (18%), Positives = 221/650 (34%), Gaps = 106/650 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG--G 64
           +  +L + ++  A+ L    +  D+   IL     +RL            ++++      
Sbjct: 3   TKQALGSTLFGMADILRDKVE--DYKSYILSLLFFKRLSDNYTWESENGIKEFVKDNKRE 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSDN---AKAIFEDF 118
            N   +  +    + F          + +       + L   + + +D+    K +    
Sbjct: 61  PNDREKEIILRRKHDFTIPDGCFWGDVRNAPLDKKNDALNKAVNAIADSNTSLKGVINTV 120

Query: 119 DFSS-----TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV--S 171
            ++      +  +     +L  +      ++L        ++ + YE+LI+RF  E    
Sbjct: 121 RWNEPSPDGSGGKKLHPEVLSPLINYLDAVDLSNRNASVDILGDAYEYLIKRFADENRNG 180

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TP++VV +    L           P    TLYDPTCG+GGFL +A  ++    
Sbjct: 181 TTAGQFYTPQEVVDIIVRYL----------KPQKGSTLYDPTCGSGGFLINAAKYIKKTT 230

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
              K    +   GQE    T A+    M++  L++         I++G TL    FT + 
Sbjct: 231 GTQK---NIRLFGQEDVWNTWAIANINMILHGLDAA--------IKKGDTLKDPKFTEED 279

Query: 291 ------RFHYCLSNPPF---------------------GKKWEKDKDAVEKEHKNGELGR 323
                  F   ++N PF                      K      +   KE  N    R
Sbjct: 280 NDLTIKTFDLVMANFPFSQENWWKNGEPKRDKKGKPITNKDGSPQLNYPGKEDFNDPYER 339

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE------- 376
           F  G+P  S+G   FL H+   +       G+A +V     LF G+    E E       
Sbjct: 340 FDYGIPPFSNGDFAFLQHIVASMNES----GKAGVVCPQGVLFRGQPQKTEEEDGQNRKA 395

Query: 377 -----IRRWLLEN------------DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
                IRR  L+             ++I+AIV LP +LF+ T I   + + +  K EER+
Sbjct: 396 DDEYLIRRGFLQGPVNKDGEFVHAINIIDAIVVLPGNLFYGTTIPGSILLFNKNKPEERK 455

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
            KV ++ A         E      +      +I  I  S  + + ++           I 
Sbjct: 456 NKVLMVYAAKEGWY--KEESNMNTLLPQDILRISTILESWGDMEIAKAW---------IT 504

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
             +      I ++    + E D+  ++   L +       + +  +             +
Sbjct: 505 SQKSRLRDLIQEELDFKKGEIDLDTQEDIELAKDKHQKAGELVKAKEAEGKKPTQAQLNN 564

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRA-DPVTDVNGEWIPDTNLT 588
           ++  +    K+   K   +A       K+  A D V       + D  L 
Sbjct: 565 LQKAKETLEKLIKQKEQRIADAEGQAEKERIAIDEVETELLTMLADPELR 614


>gi|332673346|gb|AEE70163.1| type I restriction-modification system [Helicobacter pylori 83]
          Length = 583

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 123/580 (21%), Positives = 209/580 (36%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSAA--------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
           M      A          L N IWK A  L G     DF + +      R +   +    
Sbjct: 55  MENKNTQANKSSSLERNELHNTIWKVANKLRGSVDGWDFKQYVFSILFYRYISENMAHYI 114

Query: 49  -------EPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                  +P         E+  +     I  + F       F N  + +        T  
Sbjct: 115 NKQEREHDPNFDYALLSDEEAESAKEGLIVEKGFFIPPSALFCNVLKNAPHNNDLNVTLQ 174

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L +I +   G++L    
Sbjct: 175 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVKKLNEILQAIGGMQLGDYQ 234

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 235 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 286

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 287 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 337

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  +W  DK+ +          RF P 
Sbjct: 338 --YSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSIEWVGDKNPI-----LINDERFSPA 390

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L       + F MH+ + L       G AAIV     L+ G A   E++IR +L++N+
Sbjct: 391 GVLAPKKTADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVQNN 443

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 444 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 496

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  R +IL  Y  R+  K    L           +       + L        E      
Sbjct: 497 EHNREKILKTYTERKAIKHFSALAS---------MELIKENDYNLSVNRYVEQEDTKEII 547

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L+     +I + + +Q       +  +KE  +   A
Sbjct: 548 DIKALN----AEISQIVERQSALRNSLDFIIKELEEGQNA 583


>gi|190149559|ref|YP_001968084.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189914690|gb|ACE60942.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 517

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW+ A ++ G     DF + +L     R +            E   
Sbjct: 1   MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 59

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
               S+ D       E  +K  GY  Y  S+   + + + +   NL + +          
Sbjct: 60  YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 118

Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
                S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     + 
Sbjct: 119 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 176

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG
Sbjct: 177 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 228

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     D              GQE+   T+ +    M +  +  D       +
Sbjct: 229 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 277

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL K  F   + F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 278 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++
Sbjct: 333 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +I
Sbjct: 386 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 438

Query: 453 LDIYVSRENGKF 464
           L ++  + +  +
Sbjct: 439 LKLFSDKADVDY 450


>gi|317177320|dbj|BAJ55109.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 529

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 127/580 (21%), Positives = 208/580 (35%), Gaps = 86/580 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC------ 46
           M      A          L N IWK A +L G     DF + +L     R +        
Sbjct: 1   MENKNTQADKSSSLERNKLHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYI 60

Query: 47  -----ALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                 L P         E+        I  + F       F N  + + +      T  
Sbjct: 61  NKQERELNPGFDYASLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNAPTNEDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI K    ++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVAKLNKILKAIGDMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  D + +          RF P 
Sbjct: 284 --YSKFHIAHGDTLLDPKLKDDEPFDAIVSNPPYSTKWMGDNNPL-----LINDERFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L       + F MH+ + L       G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKKTADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K ++       I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDDTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 AHNREKILKTYTERKTIKHFSALAN---------IEQIKENDYNLSVNRYVEQEDTKEAI 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +  L+     +I + + +Q       ES +KE  +   A
Sbjct: 494 DIKALN----AEISQIVQKQSALRNSLESIIKELEEGQNA 529


>gi|194426653|ref|ZP_03059207.1| type I restriction-modification system, M subunit [Escherichia coli
           B171]
 gi|194415392|gb|EDX31660.1| type I restriction-modification system, M subunit [Escherichia coli
           B171]
 gi|195183370|dbj|BAG66907.1| predicted type I restriction-modification system methyltransferase
           subunit [Escherichia coli O111:H-]
 gi|323158215|gb|EFZ44307.1| type I restriction-modification system, M subunit [Escherichia coli
           E128010]
 gi|323939693|gb|EGB35897.1| type I restriction-modification system [Escherichia coli E482]
          Length = 518

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/483 (24%), Positives = 194/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+     VQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLSKHKTD---TNVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 443

Query: 459 REN 461
           +E+
Sbjct: 444 KED 446


>gi|303249554|ref|ZP_07335761.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302651628|gb|EFL81777.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 516

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW+ A ++ G     DF + +L     R +            E   
Sbjct: 1   MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 59

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
               S+ D       E  +K  GY  Y  S+   + + + +   NL + +          
Sbjct: 60  YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 118

Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
                S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     + 
Sbjct: 119 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 176

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG
Sbjct: 177 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 228

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     D              GQE+   T+ +    M +  +  D       +
Sbjct: 229 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 277

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL K  F   + F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 278 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 332

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++
Sbjct: 333 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 385

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +I
Sbjct: 386 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 438

Query: 453 LDIYVSRENGKF 464
           L ++  + +  +
Sbjct: 439 LKLFSDKADVDY 450


>gi|262375745|ref|ZP_06068977.1| type I restriction-modification system protein [Acinetobacter
           lwoffii SH145]
 gi|262309348|gb|EEY90479.1| type I restriction-modification system protein [Acinetobacter
           lwoffii SH145]
          Length = 920

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 193/496 (38%), Gaps = 68/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L              +    A  
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFMFYKFLSDKEQSFLEGNDFAQSDIEALT 61

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNA----KAIFED 117
             +++   F+K     F  Y+    +    G   T  ++   +++FS +     K +F+ 
Sbjct: 62  EEDVETVEFIKNGIGYFIAYDDLFSTWLNKGLDFTVADVRDALSAFSRHIHSSHKKVFDG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L          +  + +    I    +     V+  IYE+LI  F +  
Sbjct: 122 IFKTLETGLSKLGDNSNSQTKAISDLLQLIKVI-PMNNKQDYDVLGFIYEYLIGSFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +  + VA  
Sbjct: 181 GKKAGEFYTPHEVSVLMSEIIAHYLKD------QPEIKIYDPTSGSGSLLINIGSSVAKH 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL-- 286
            +          + QEL+  T+ +    +++R +       L  NI  +   TL  D   
Sbjct: 235 VNDANKIK---YYAQELKENTYNLTRMNLVMRGI-------LPANIVARNADTLEDDWPF 284

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                    +        +SNPP+ + W+      +  +K         GL   +     
Sbjct: 285 FEDNDPINTYEPLYVDAVVSNPPYSQAWDPANKDADPRYKE-------FGLAPKTKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L+      G  AIVL    LF G     E  IR  L++ + I+AI+ LP ++
Sbjct: 338 FLLHDLYHLKP----NGIMAIVLPHGVLFRGGE---EERIRTNLIKKNHIDAIIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + IL   K +     V +++A+  +     +G K   +     ++I+D  +
Sbjct: 391 FFGTGIPTVIIIL---KQQRPTTDVLIVDASKGFV---KQG-KNNHLQASNIKKIVDAVI 443

Query: 458 SRENGK-FSRMLDYRT 472
            R++ + FSR++  + 
Sbjct: 444 ERKDVEQFSRLVTQKE 459


>gi|217033077|ref|ZP_03438543.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128]
 gi|298737196|ref|YP_003729726.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|216945198|gb|EEC23885.1| hypothetical protein HPB128_179g3 [Helicobacter pylori B128]
 gi|298356390|emb|CBI67262.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 815

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 124/565 (21%), Positives = 220/565 (38%), Gaps = 74/565 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N +        G  FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 45  ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGENKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290
              L  +GQE +  T A+C   M++             +I +G  STLS  LFT +    
Sbjct: 206 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPLFTTENGML 258

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346
             F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L
Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   
Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           + IL       R+G V +I+A+  +   + +G K R + D   ++++D + + +    +S
Sbjct: 372 VIILDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNAYKEIPYYS 426

Query: 466 RMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +M+             + R +      +K   A + +     K        +  + K + 
Sbjct: 427 KMVSLEEISANDYNLNIARYIAAKPESEKDLFALINSPSYLPKNEIKAYDPYFQVFKELK 486

Query: 524 QQIYPYGWAESFVKESIKSNEAKTL 548
             ++     E +     +    K L
Sbjct: 487 NTLFKKSDKEGYYALKTECENIKEL 511


>gi|304440530|ref|ZP_07400417.1| type I restriction-modification system DNA-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371008|gb|EFM24627.1| type I restriction-modification system DNA-methyltransferase
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 528

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 119/560 (21%), Positives = 208/560 (37%), Gaps = 77/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              +   A L   IW  A+++ G     DF + IL     R +   +    ++   +   
Sbjct: 10  NNESLQRAELHRKIWAIADNVRGAVDGWDFKQYILGILFYRFISENITEFFNSAEHEAGD 69

Query: 62  FGGSNIDLESFVKVAGYS---------FYNTSEYSLSTLGSTNTRNNLE-------SYIA 105
                 DL        +          F   SE  ++      T  NL          I 
Sbjct: 70  LDFDYADLSDEEAERDFRPGTVEDKGFFILPSELFVNVCKDARTNENLNTDLANIFKAIE 129

Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153
             +      D+ K +FED D  +   RL     EK   L  I    + I        D  
Sbjct: 130 GSAVGYPSEDDIKGLFEDVD--TKSNRLGGNVPEKNKRLADILTGIAEINFGEFQKNDID 187

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+LI  + S   +   +F TP+ V  L   +++D   ++ K         YDPT
Sbjct: 188 AFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARIVMDGKTSINK--------AYDPT 239

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L        +              GQE+      +    M +  +  +     +
Sbjct: 240 CGSGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHNVNYN-----N 288

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I++G TL +     ++ F   +SNPP+  KW  D D            RF P   L  
Sbjct: 289 FSIKRGDTLLQPKHKDEKPFDAIVSNPPYSIKWIGDADPT-----LINDERFAPAGKLAP 343

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L       GRAAIV      +   A   E  IR++L++N+ I+ +
Sbjct: 344 KSYADYAFILHSLSYLSSK----GRAAIVCFPGIFYRKGA---EKTIRQYLVDNNFIDCV 396

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T+IAT + +++  KTE    K+  I+A+  +    N      I+      
Sbjct: 397 IQLPENLFFGTSIATCILVMAKNKTE---NKILFIDASKEFKKETN----NNILEQKNID 449

Query: 451 QILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWR 505
            I++ + +R+  ++ SR +           +     +     +  +       E + T +
Sbjct: 450 AIVEEFRNRDEKEYFSRYVPVEEIVENDYNLSVSTYVEKEDTREKIDIKVLNKEIEETVK 509

Query: 506 KLSPLHQSFWLDILKPMMQQ 525
           K+  L ++   +I+K +  +
Sbjct: 510 KIDEL-RASINEIVKELEDE 528


>gi|108563258|ref|YP_627574.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837031|gb|ABF84900.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 507

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 206/555 (37%), Gaps = 78/555 (14%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAVREKYLAFGGS 65
            N IWK A +L G     DF + +L     R +   +      +  +      Y      
Sbjct: 2   HNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMTHYINKKERKRDPDFDYAKLSDE 61

Query: 66  N--------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------DNA 111
                    I+ + F       F N  + +        T  N+ + I   S      +N 
Sbjct: 62  EAKHARKHLIEEKDFFIPPSALFCNALKNAPHNEDLNVTLQNIFNEIEKSSLGTPSEENV 121

Query: 112 KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFG 167
           K +F D D +S     +   +   L KI +   G++L         V  + YE+L+  + 
Sbjct: 122 KGLFADLDVNSNKLGSSHKNRVEKLTKILEAIGGMQLGDYLKSGIDVFGDAYEYLMAMYA 181

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           S   +   +F TP++V  L   + L   +++ K        +YDP CG+G  L      +
Sbjct: 182 SNAGKSGGEFFTPQEVSELLAKITLHNQESVNK--------VYDPCCGSGSLLLQFSKVL 233

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            D              GQE+   T+ +C   M +  +          +I  G TL     
Sbjct: 234 GDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN-----YTKFHIALGDTLLDPKH 282

Query: 288 TG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLAN 344
              + F   +SNPP+  KW  D + +          RF P   L   +   + F MH+ +
Sbjct: 283 EDDEPFDAIVSNPPYSTKWGGDNNPL-----LINDERFSPAGVLAPKNAADLAFTMHMLS 337

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G AAIV     L+ G A   E++IR +L++ ++I+ ++ALP +LFF TNIA
Sbjct: 338 YLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKENVIDCVIALPDNLFFGTNIA 390

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           T + +L   K ++       I+A+  +        K+  +    R +IL  Y+ R+  K 
Sbjct: 391 TCILVLKKNKKDDTT---LFIDASKEFVKE----GKKNKLKAHNREKILQTYIERKEVKH 443

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              L           + +     + L        E       +  L+     +I + + +
Sbjct: 444 FCALAN---------MEQIQENDYNLSVNRYVEQEDTKEAIDIKALN----SEISQIVEK 490

Query: 525 QIYPYGWAESFVKES 539
           Q       +  +KE 
Sbjct: 491 QSALRNRLDRIIKEL 505


>gi|15612488|ref|NP_224141.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4156043|gb|AAD07001.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 815

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 121/565 (21%), Positives = 227/565 (40%), Gaps = 74/565 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------- 43

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
            +  +++S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 44  KAKNNMDSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290
              L  +GQE +  T A+C   M++           + +I +G  STLS  LFT +    
Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPLFTTENGML 258

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346
             F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L
Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSL 318

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G+ A++L    LF G A   E++IR+ LL    I+ ++ L  +LF+ T+I   
Sbjct: 319 NPT----GKGAVILPHGVLFRGNA---EAQIRKNLLMKGYIKGVIGLAPNLFYGTSIPAC 371

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           + +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +    +S
Sbjct: 372 VIVLDKENAHARKG-VFVIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYS 426

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSPLHQSFWLDILKPMM 523
           +M+           +  P  ++   +      A + +     K        +  + K + 
Sbjct: 427 KMVSLEEISLNDYNLNIPRYIAAKQELEKDLFALINSPSYLPKNEIKAYDPYFQVFKELK 486

Query: 524 QQIYPYGWAESFVKESIKSNEAKTL 548
             ++     E +     +    K L
Sbjct: 487 NTLFKKSDKEGYYALKTECENIKDL 511


>gi|257893689|ref|ZP_05673342.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,408]
 gi|257830068|gb|EEV56675.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,231,408]
          Length = 512

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/527 (18%), Positives = 202/527 (38%), Gaps = 69/527 (13%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70
              +++   +L     + L   L            E+Y                     +
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA------KAIFEDFDFS 121
               +     Y  S   L  + +   +     L     +F   A        +F+D D  
Sbjct: 61  LIATIVDILGYAISPVYLFNVLADQAKQATFQLNDLNKAFVQLASTYNQFNGLFDDVDLQ 120

Query: 122 ST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           S        ++   + ++ K  + +E+        V+ + YE LI +F SE  + A +F 
Sbjct: 121 SKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEFLISQFASEAGKKAGEFY 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +   ++         +      +++DPT G+G  + +  N++         P 
Sbjct: 179 TPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT-------HPD 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T + + +   +
Sbjct: 226 NVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTDEPYTFDAVV 280

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+   W  D   ++         R+G  L   S     FL+H    L+      G  
Sbjct: 281 MNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKET----GTM 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L   +  
Sbjct: 332 AIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQT 388

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
                V  I+A+  +      GK +  ++++  ++IL+ Y  R++ + ++ +  +     
Sbjct: 389 R---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKDVEKYAHLATFDEIKE 441

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
               +  P  +    ++  +  +      +K+         ++L+ +
Sbjct: 442 NDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLEAI 488


>gi|308183636|ref|YP_003927763.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           PeCan4]
 gi|308065821|gb|ADO07713.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           PeCan4]
          Length = 820

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 121/596 (20%), Positives = 223/596 (37%), Gaps = 87/596 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
            +  +  S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 48  DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAYIAEQNDLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++           + +I +G  STLS   F      +
Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPFFIKNNMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQIINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V LI+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARARKG-VFLIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 470 SYLPKNEIEAYAPYFQVFKELKNTLFKKSDKEGYYALKTECQNIKDLITQSSEYQA 525


>gi|307256315|ref|ZP_07538098.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865141|gb|EFM97041.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 535

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 202/492 (41%), Gaps = 70/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVR 56
           MT      A L   IW+ A ++ G     DF + +L     R +       +E    +++
Sbjct: 21  MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 79

Query: 57  EKYLAFGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
               +    NI L  E  +K  GY  Y  S+   + + + ++  NL + +          
Sbjct: 80  YAAWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESS 138

Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
                S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     + 
Sbjct: 139 ATGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 196

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG
Sbjct: 197 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 248

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     D              GQE+   T+ +    M +  +  D       +
Sbjct: 249 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 297

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL K  F   + F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 298 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 352

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++
Sbjct: 353 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 405

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +I
Sbjct: 406 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 458

Query: 453 LDIYVSRENGKF 464
           L ++  + +  +
Sbjct: 459 LKLFSDKADVDY 470


>gi|331085151|ref|ZP_08334237.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407934|gb|EGG87424.1| type I restriction-modification system [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 531

 Score =  273 bits (699), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 179/491 (36%), Gaps = 64/491 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP------------TRSAV 55
              L   +W  A+ L G     ++   +L     + L  +               T    
Sbjct: 4   TKDLLQVLWSGADVLRGKMDANEYKTYLLGLVFYKYLSDSYLEKAYDLLNDEAPKTLEEA 63

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE--------SYIAS 106
           ++ Y     S    +   ++     Y      +   +      N           ++I  
Sbjct: 64  QKVYEEAYDSEDAEDLLEELKSSLHYTLEPGMTYVCMLRDAKNNCFSREKLQAAFNHIEE 123

Query: 107 FSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             +    +F D D  S        +++  +  + K   G +L        V+ N YE+LI
Sbjct: 124 ADELFNGLFSDVDLYSNRLGTGDQKQSDTIADVLKVLEGADLIHAKGD--VLGNAYEYLI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F SE  + A +F TP     +   + L   +            +YDP  G+G  +   
Sbjct: 182 GQFASETGKKAGEFYTPHGPAQILCRIALLGQEG------KKGLQVYDPCMGSGSLMLSC 235

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N+  +       P  +  +GQE+ P T+ +    M + R+  +     +++++   TL 
Sbjct: 236 KNYSEE-------PDYIKYYGQEIMPSTYNLARMNMFLHRVHPE-----NQHLRNADTLD 283

Query: 284 KDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            D  T +   F     NPP+  KW   +   + E      G+    L   S     FL+H
Sbjct: 284 ADWPTDEDTEFDVVTMNPPYSAKWSAAEGFKQDERFMDYGGK----LAPKSKADYAFLLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       G  AIVL    LF G     E EIR+ LLEN  I A++ LP ++F+ T
Sbjct: 340 GFYHLRQS----GTMAIVLPHGVLFRGA---SEGEIRKILLENGSIYAVIGLPANMFYNT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I T + +L   +       V  I+A+  +   +    K+ ++ D+    +L++Y +R+ 
Sbjct: 393 SIPTCIIVLKKHREGR---DVLFIDASSQFVKEK----KQNVMQDEHIDHVLELYKNRKP 445

Query: 462 GKFSRMLDYRT 472
                 L    
Sbjct: 446 VDKEAYLASYE 456


>gi|253315524|ref|ZP_04838737.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
          Length = 446

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 109/468 (23%), Positives = 184/468 (39%), Gaps = 68/468 (14%)

Query: 25  DFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNIDLESFVKVAGYS 79
           +   ++F   IL     R L    E   +            A+       +   ++    
Sbjct: 1   NMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQV 60

Query: 80  FYNTSE---------------YSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST 123
            Y                   + +  L +T  R    S +   S+N    +F D D SST
Sbjct: 61  GYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSST 119

Query: 124 ---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                  E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP
Sbjct: 120 RLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + V  +   ++ D  D         +R +YDPTCG+G  L              K   + 
Sbjct: 180 QQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVY 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE    T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP
Sbjct: 222 RYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPP 276

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +  KW  D      E  +G        L   S     F+ H+ + L+      G  A+VL
Sbjct: 277 YSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVL 327

Query: 361 SSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
               LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++ 
Sbjct: 328 PHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQD 382

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
             V  I+A++ +      GK +  ++D Q  +I+D Y  +E   K+S 
Sbjct: 383 DNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSY 426


>gi|219870941|ref|YP_002475316.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
 gi|219691145|gb|ACL32368.1| type I restriction-modification system, M subunit [Haemophilus
           parasuis SH0165]
          Length = 515

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 107/490 (21%), Positives = 184/490 (37%), Gaps = 65/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M       A L   IW+ A ++ G     DF + +L     R +    +       E   
Sbjct: 1   MIISIQQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN 60

Query: 61  AFGGSNIDL------ESFVKVAGYSFY----------NTSEYSLSTLGSTNTRNNLESYI 104
               S+ D       +  +K  GY  Y          N        +       ++E+  
Sbjct: 61  YAQFSDDDPILEQIKDDTIKSKGYFIYPSQLFENVVKNAHTNPALNIELAEIFADIENSA 120

Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
             +  + + I   F DF +   RL     +K   L  + K    ++          +  +
Sbjct: 121 NGY-PSEQDIKGLFADFDTRSNRLGNTVADKNKRLTAVLKGVEELDFGKFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP++V  L   L L     + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKTVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   + F   +SNPP+  +W  D++            RF P   L   S  
Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPT-----LINDERFAPAGILAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K +    K Q I+A+ L+    N      ++ D+   +I+ 
Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 442 LFSEKTDVPH 451


>gi|315634370|ref|ZP_07889657.1| type I restriction-modification system DNA-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
 gi|315476960|gb|EFU67705.1| type I restriction-modification system DNA-methyltransferase
           [Aggregatibacter segnis ATCC 33393]
          Length = 515

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 113/490 (23%), Positives = 188/490 (38%), Gaps = 65/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M         L   IW+ A D+ G     DF + +L     R +            +   
Sbjct: 1   MATAIQQREELQRRIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA--- 111
               ++ +       E  +K  GY  Y  S+   + + + NT  NL + + S   +    
Sbjct: 61  YSAFNDDNPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKSIFTDIENS 119

Query: 112 -------KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
                  + I   F DF +T  RL     +K   L  + K  + ++          +  +
Sbjct: 120 ATGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDFGDFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   + F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 281 LGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IA  + +LS  K + +    Q I+A+ L+           I+ ++   QIL 
Sbjct: 389 PNLFFGTSIAVNILVLSKHKPDTQT---QFIDASGLF----KSATNNNILEEEHIEQILK 441

Query: 455 IYVSRENGKF 464
           ++  +E+   
Sbjct: 442 LFADKEDVPH 451


>gi|325578338|ref|ZP_08148473.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325160074|gb|EGC72203.1| type I restriction-modification system DNA-methyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 514

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 115/490 (23%), Positives = 189/490 (38%), Gaps = 66/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M       A L   IW+ A D+ G     DF + +L     R +            +   
Sbjct: 1   MAAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFANYIEGGDDSVD 60

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS----- 108
               ++ D       E  +K  GY  Y  S+   + + + NT  NL + +   F+     
Sbjct: 61  YSTFNDDDPIIAAIKEDTIKAKGYFIY-PSQLFKNVVATANTNPNLNTDLKNIFTAIENS 119

Query: 109 ----DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
                + + I   F DF +T +RL     +K   L  + K  + ++          +  +
Sbjct: 120 ATGYPSEQDIKGLFADFDTTSSRLGNTVADKNSRLADVLKGVAELDFGDFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   + F   +SNPP+  KW    D            RF P   L   S  
Sbjct: 281 LGNTLMNPQFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T+IA  + +LS  K   +    Q I+A+ L+    N       +  +   QIL 
Sbjct: 389 PNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLFKPDTN-----NSLEPEHIEQILK 440

Query: 455 IYVSRENGKF 464
           ++  +E+   
Sbjct: 441 LFADKEDVPH 450


>gi|328947421|ref|YP_004364758.1| type I restriction-modification system, M subunit [Treponema
           succinifaciens DSM 2489]
 gi|328447745|gb|AEB13461.1| type I restriction-modification system, M subunit [Treponema
           succinifaciens DSM 2489]
          Length = 514

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 115/486 (23%), Positives = 192/486 (39%), Gaps = 68/486 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE---CALEPTRSA--VREKYL 60
              A L   IWK A ++ G     DF + +L     R +    CA         V     
Sbjct: 5   QQRAELQAQIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFCAYIEADDESIVYASLE 64

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFSD---------- 109
               +    +  +K  GY  Y  S+  ++   + N   +L + +   FS+          
Sbjct: 65  DSIITPEIKDDAIKTKGYFIY-PSQLFVNIAKNANDNESLNTDLAEIFSEIEKSATGYDS 123

Query: 110 --NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEH 161
             + K +F   DF +T  RL     EK   L  +    SG+           +  + YE 
Sbjct: 124 EQDIKGLFA--DFDTTSNRLGNTVKEKNSRLAAVINGVSGLNFGNFHDNQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L   L +   + + K        +YDP CG+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQNVSKLIARLAMHKQENVNK--------IYDPACGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     +              GQE+   T+ +    M +  +  D       NI+ G T
Sbjct: 234 QAKKQFEENKIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIKLGDT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L+   F   + F   +SNPP+   W    D            RF P   L   S     F
Sbjct: 283 LTNPQFKDDKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 ILHSLNYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+IA  + +LS  K +    K+Q I A +L+    N      I+ D+   +I++ + S
Sbjct: 391 YGTSIAVNILVLSKHKED---TKIQFIEAGELYQKETN----NNILTDEHIEKIIEAFDS 443

Query: 459 RENGKF 464
           + + ++
Sbjct: 444 KNDIQY 449


>gi|57790478|gb|AAW56179.1| Cj81-118 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 314

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 101/324 (31%), Positives = 160/324 (49%), Gaps = 31/324 (9%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S ++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGI--------------ELHPDTVPDRVMSNIYEHLI 163
           F F + +  LE++ +L+ + + F                  +    + +  M  ++E LI
Sbjct: 122 FKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEKGNVIHKGLSNLGMGYVFEELI 181

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+++ L T L+  P     K+       +YD  CG+GG LT++
Sbjct: 182 RKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIKQG---TWLIYDNACGSGGMLTES 238

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + D     +    +  +GQE+ PET+A+C A MLI+  + D       +I+ GSTLS
Sbjct: 239 KEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLIKGEDPD-------HIKFGSTLS 291

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEK 307
            D     +F + LSNPP+GK WE 
Sbjct: 292 NDQ-QNLQFDFMLSNPPYGKSWEN 314


>gi|256832724|ref|YP_003161451.1| type I restriction-modification system, M subunit [Jonesia
           denitrificans DSM 20603]
 gi|256686255|gb|ACV09148.1| type I restriction-modification system, M subunit [Jonesia
           denitrificans DSM 20603]
          Length = 521

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 114/583 (19%), Positives = 213/583 (36%), Gaps = 94/583 (16%)

Query: 1   MTEFT--GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVR 56
           M+  T     A L   IW+ A DL G     DF   +L     R +   L     ++  +
Sbjct: 1   MSPTTKESQRAELHKTIWRIANDLRGSVDGWDFKTYVLGMLFYRFISENLTAYLNKAEHK 60

Query: 57  EKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSDN 110
               +F  + +            V    FY         +  +  T  NL   +     +
Sbjct: 61  AGDASFDYARLPDAQAEFGRKETVEEKGFYILPSDLFQNVRRNAATDPNLNETLERVFKD 120

Query: 111 A-------------KAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVP 151
                         K +F+D D       +T+AR  +   L K+      + L   +   
Sbjct: 121 IEGSALGTESEGDLKGLFDDLDVNSSKLGNTVAR--RNEKLVKLLDAIGDLPLGNFEDNS 178

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE+L++ + S+  +   ++ TP++V  +   + +     + K        +YD
Sbjct: 179 IDLFGDAYEYLMQMYASQAGKSGGEYYTPQEVSEVLARIAVAGKKRVNK--------VYD 230

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L      +           +   +GQE+   T+ +    M +  +  +    
Sbjct: 231 PAAGSGSLLLKFAKVL-------GKENVGGFYGQEINLTTYNLARINMFLHDVNYEKFS- 282

Query: 272 LSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
               +  G TL+       + F   +SNPP+  KWE D + +          RF P   L
Sbjct: 283 ----LAHGDTLTDPQHWDDEPFEAIVSNPPYSIKWEGDANPL-----LINDERFAPAGVL 333

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   + F MH+ + L +     G AAIV     L+ G A   E++IR++L++N+ ++
Sbjct: 334 APKSKADLAFTMHILSWLAV----NGTAAIVEFPGVLYRGGA---EAKIRKYLVDNNYVD 386

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           A++ LP DLFF T IAT + +L   K +     V  ++A++ +   +  G K   +  D 
Sbjct: 387 AVIQLPPDLFFGTTIATCIIVLKKSKADNA---VLFVDASNEF---KRVGNK-NKLLPDH 439

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++ ILD    R                             ++    +A  + +I      
Sbjct: 440 QKNILDALEQRVPVD---------------------HRVALISNEEIAANDYNIAVSSYV 478

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
               +  +  +  +  +I      ++ ++ SI +  A     K
Sbjct: 479 EAEDTREVINITELNAEIARIVARQAELRTSIDAIVADLEGTK 521


>gi|210135698|ref|YP_002302137.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210133666|gb|ACJ08657.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 816

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 122/595 (20%), Positives = 218/595 (36%), Gaps = 91/595 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N +        G  FY   E  L+  G     + L   IA  ++  + K   +  DF+
Sbjct: 45  ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGAIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMIDALSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++           + +I +G  STLS  LF      K
Sbjct: 206 QKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPLFIENGMLK 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEKNGDFAFLLHIIKSLK 318

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 319 TT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + D   ++++D + + +   +   
Sbjct: 372 IVLDKENAHARKG-VFVIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNAYKEIPYYSK 426

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 427 M---------------------VSLEEISANDYNLNIPRYIAAKQESEKDLFALINSHKA 465

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
            Y         +      K LK    K        A   +          + E+ 
Sbjct: 466 SYLPKNEIKAYAPYFQAFKELKNTLFKKSDKEGYYALKTECENIKESITQSLEYQ 520


>gi|135199|sp|P10484|T1M1_ECOLX RecName: Full=Type I restriction enzyme EcoR124II M protein;
           Short=M.EcoR124II
 gi|4467402|emb|CAA31541.1| unnamed protein product [Escherichia coli]
          Length = 520

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 119/483 (24%), Positives = 194/483 (40%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 7   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 67  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 125

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 126 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 183

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 184 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 235

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     +              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 236 QAKKQFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 284

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 285 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 339

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 340 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 392

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +LS  KT+     VQ I+A++L+    N      I+ D    QI+ ++ S
Sbjct: 393 FGTTIAVNILVLSKHKTD---TNVQFIDASELFKKETN----NNILTDAHIEQIMQVFAS 445

Query: 459 REN 461
           +E+
Sbjct: 446 KED 448


>gi|317178238|dbj|BAJ56027.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 820

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 122/596 (20%), Positives = 223/596 (37%), Gaps = 87/596 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   IL    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYILNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
            +  +  S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 48  DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS  LF      +
Sbjct: 210 KNGLTIYGQEKDISTTALCRMNMILHN-------SADADIAKGGSSTLSNPLFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 AFDYVVANPPFSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 470 SYLPKNEIKAYAPYFQVFKELKNMLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525


>gi|224283254|ref|ZP_03646576.1| hypothetical protein BbifN4_05435 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140400|ref|ZP_07802593.1| HsdM [Bifidobacterium bifidum NCIMB 41171]
 gi|313132910|gb|EFR50527.1| HsdM [Bifidobacterium bifidum NCIMB 41171]
          Length = 855

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 190/518 (36%), Gaps = 70/518 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAVREK-YLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L            +R++      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMRDEDLEELR 61

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113
             + +   +V+     F  Y+    +           N+   +++F  N           
Sbjct: 62  EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121

Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           IF+     + +++L      ++     +      I           +  IYE+LI  F S
Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA
Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D   
Sbjct: 233 RRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284

Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                     +        +SNPP+ + WE          + GE  RF  G+   S    
Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ LP +
Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +L   + +     V +++A+  +T       K   +     ++I+D  
Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442

Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
             +R+  KFSR++           +  P  +    +  
Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480


>gi|212639883|ref|YP_002316403.1| type I restriction-modification system methyltransferase subunit
           [Anoxybacillus flavithermus WK1]
 gi|212561363|gb|ACJ34418.1| Type I restriction-modification system methyltransferase subunit
           [Anoxybacillus flavithermus WK1]
          Length = 515

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 98/549 (17%), Positives = 195/549 (35%), Gaps = 73/549 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +++ A  + G     D+   +LP   LR L    E  R  + +            +  ++
Sbjct: 13  LFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPSSDWYTEDDEMR 72

Query: 75  ----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                      A   F    E S S +     + N++  + +     +   E+ +    +
Sbjct: 73  QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGIL 130

Query: 125 ARLEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
            R+ +   L       + + FS      +T     ++   YE+ I  F +       +F 
Sbjct: 131 PRIYQGSNLPAENVAGLIEIFSRDVFSANTHESVDILGRTYEYFISSFAASEGNRGGEFF 190

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L  A+L                 ++DP CG+GG    +  +            
Sbjct: 191 TPSSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKH 232

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L  +GQE    T  +    +L+  + ++        I+ G +L  D F   +  Y ++N
Sbjct: 233 ALSFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYIIAN 284

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       +     +  +    R   G    S+ + +++ H    L    N  G A  
Sbjct: 285 PPFN------QKDWGADRLSKNDPRL-IGPVTNSNANYMWMQHFLYHL----NDTGTAGF 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS  +  + 
Sbjct: 334 VMANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKN 391

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                + ++  I+A  + T +     K++ ++ ++  +I  +Y + +  +     D    
Sbjct: 392 GYRARKNEILFIDARKMGTLVSR---KQKALSKEEIDKIAAVYHAYKYEEAEGYEDV--T 446

Query: 474 GYRRI-KVLRPLRMSFILDKT---GLARLEADIT--WRKLSPLHQSFWLDILKPMMQQIY 527
           G+ ++  +       + L      G    + D T    K++ L Q       +    Q  
Sbjct: 447 GFCKVATIEEVQANDYKLTPGIYVGTEVSDEDDTPFEEKMAELTQRLLEQFEESNRLQEK 506

Query: 528 PYGWAESFV 536
                E  +
Sbjct: 507 IKRDLEGLL 515


>gi|238787647|ref|ZP_04631445.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii
           ATCC 33641]
 gi|238724434|gb|EEQ16076.1| Type I restriction enzyme EcoprrI M protein [Yersinia frederiksenii
           ATCC 33641]
          Length = 526

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 125/555 (22%), Positives = 213/555 (38%), Gaps = 78/555 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------VREKY 59
              A+L   IW  A ++ G     DF + +L     R +         A        E  
Sbjct: 5   QQRAALQRQIWAIANEVRGAVDGWDFKQYVLGALFYRFISENFTSYIEAGDDSINYAELP 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
            +     I  ++  K  GY F   S+  ++   + ++  +L + +A    +         
Sbjct: 65  DSVITQEIKEDAI-KTKGY-FIRPSDLFVNVAKNAHSNESLNTDLAHIFADIEASASGYP 122

Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHL 162
             + I   F DF +T  RL     +K   L  + K  +G++    T     +  + YE L
Sbjct: 123 SERDIKGLFADFDTTSNRLGNTVKDKNARLAAVLKGVAGLDFGDFTASHIDLFGDAYEFL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+G  L  
Sbjct: 183 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPACGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H                 GQE+   T+ +    M +  +  D       NIQ G+TL
Sbjct: 235 AKKHFDAHVIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIQLGNTL 283

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
           ++  F   + F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 284 TEPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+
Sbjct: 339 LHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLFY 391

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD-------QRRQI 452
            T IA  + +L+  KTE      Q I+A+ L+    N      ++ D+         +QI
Sbjct: 392 GTTIAVNILVLAKNKTETTT---QFIDASGLFKKETN----NNVLTDNDDEKNLGHIQQI 444

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF-ILDKTGLARLEADITWRKLSPLH 511
           + ++ S+EN          +  Y  I   +   +S     +    R E DI       + 
Sbjct: 445 MRVFASKENVDHFAR----SVPYEEIANEKDYNLSVSSYIEAKDTREEVDIAQLNAELIT 500

Query: 512 QSFWLDILKPMMQQI 526
               ++ L+  +  I
Sbjct: 501 TVARIEQLRTEIDAI 515


>gi|225351808|ref|ZP_03742831.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157055|gb|EEG70394.1| hypothetical protein BIFPSEUDO_03409 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 853

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 106/521 (20%), Positives = 191/521 (36%), Gaps = 76/521 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----------CALEPTRSAVR 56
           +   LA+ IW++A  +    +  ++   IL F   + L              E     + 
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSENELMRLKANDFTEDDLPQLT 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA----K 112
           E          D   +       F      +    G+    +N+   +++FS N     K
Sbjct: 62  EDNPDIVEGVQDECGYFIAYDNLFS-----TWIKKGNDFEISNVRDALSAFSRNINPARK 116

Query: 113 AIFED-FD-FSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            +F+  FD   + +++L      ++     +      I          V+  IYE+LI  
Sbjct: 117 RVFDGIFDTLQTGLSKLGTDARSQSKAARDLIYLIKDI-PMDGRQDYDVLGFIYEYLISN 175

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   + A +F TP +V  L + ++                 +YDPT G+G  L     
Sbjct: 176 FAANAGKKAGEFYTPSEVSQLMSEIVAWHLQGR------EQIKIYDPTSGSGSLLIHIGQ 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            VA    +   P  ++ + QEL+  T+ +    +++R +  D         + G TL  D
Sbjct: 230 AVARRNGN---PDSIMYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLEDD 281

Query: 286 LFTGKR------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                                 +SNPP+ + W+     +          RF  G+   S 
Sbjct: 282 WPWFDTLENKEETYNPLFVDAVVSNPPYSQNWDPTDKEI--------DPRFSYGIAPKSR 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L       G   IVL    LF G     E +IR+ L+EN  I+AI+ L
Sbjct: 334 ADYAFLLHDLYHLRAD----GIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T I T + +L  ++ +    +V +++A+  +        K   +     ++I+
Sbjct: 387 PANIFFGTGIPTIVMVLRKKRDD---DRVLIVDASKHFIKD----GKNNKLQASDIKRIV 439

Query: 454 DIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           D+   +R   KFSR++           +  P  +    D  
Sbjct: 440 DVVSNNRTVPKFSRLVSIDEIRANDYNLNIPRYVDSSEDAE 480


>gi|165975742|ref|YP_001651335.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|307262879|ref|ZP_07544503.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165875843|gb|ABY68891.1| putative type I restriction-modification systemmethyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|306871784|gb|EFN03504.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 537

 Score =  273 bits (698), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW+ A ++ G     DF + +L     R +            E   
Sbjct: 21  MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 79

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
               S+ D       E  +K  GY  Y  S+   + + + +   NL + +          
Sbjct: 80  YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 138

Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
                S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     + 
Sbjct: 139 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 196

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG
Sbjct: 197 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 248

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     D              GQE+   T+ +    M +  +  D       +
Sbjct: 249 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 297

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL K  F   + F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 298 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 352

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++
Sbjct: 353 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 405

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +I
Sbjct: 406 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 458

Query: 453 LDIYVSRENGKF 464
           L ++  + +  +
Sbjct: 459 LKLFSDKADVDY 470


>gi|262166148|ref|ZP_06033885.1| type I restriction-modification system M subunit [Vibrio mimicus
           VM223]
 gi|262025864|gb|EEY44532.1| type I restriction-modification system M subunit [Vibrio mimicus
           VM223]
          Length = 860

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 99/480 (20%), Positives = 177/480 (36%), Gaps = 59/480 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFG 63
           +   LA  IW++A  +    +  D+   IL F   + L               E      
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANDYKDYILGFIFYKFLSDKQVQFLLQNDFDNELISKVS 61

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117
            ++ D   FV+     F  Y+    +    G       +   +++FS     + K +F+ 
Sbjct: 62  EADTDTVKFVQDELGYFIAYDNLFSTWVNDGKDFDIAYVRDALSAFSRLINPDHKDLFDG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++          +    + I +        V+  IYE+LI  F +  
Sbjct: 122 IFTTLETGLSKLGESAAAQTKAAMSLIHLINDIPMKGK-QDYDVLGFIYEYLISHFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++ +               +YDPT G+G  L +    V   
Sbjct: 181 GKKAGEFYTPHEVSVLMSEIMAEHLKNRKDIQ------IYDPTSGSGSLLINIGQSVEKR 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
                    +  + QEL+  T+ +    + +R +  +         +   TL  D     
Sbjct: 235 LDAQN---NIRYYAQELKQNTYNLTRMNLFMRGILPNNIIT-----RNADTLEDDWPIDN 286

Query: 287 ---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  R    +SNPP+ +KW       + E KN +      GL   +     FL+H  
Sbjct: 287 EKTHEPMRVDAVVSNPPYSQKW-------DPEFKNKDPRYAPFGLAPKTKADYAFLLHDL 339

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      G   IVL    LF G     E +IR  L+E + I+A++ LP ++FF T I
Sbjct: 340 YHLKPD----GIMTIVLPHGVLFRGG---DEGKIRENLIEKNHIDAVIGLPANIFFGTGI 392

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            T + +L   K       V +I+A+  +        K   +     R+I+D    R+  +
Sbjct: 393 PTVILVL---KRIRTSDDVLIIDASKGFIKD----GKNNKLRACDIRRIVDTVSDRQPQE 445


>gi|187729921|ref|YP_001853815.1| type I restriction-modification system [Vibrio tapetis]
 gi|182894480|gb|ACB99645.1| type I restriction-modification system N6-methylase [Vibrio
           tapetis]
          Length = 864

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 102/495 (20%), Positives = 187/495 (37%), Gaps = 72/495 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----------ALEPTRSAVR 56
           +   LA  IW++A  +    +  D+   IL F   + L              E +   + 
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANDYKDYILGFIFYKFLSDKQVQFLINNEFDEQSIKELN 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAK 112
           E+         +   +       F      +    G       +   +++F    +   K
Sbjct: 62  EQDEDTLNYVRNEIGYFIAYDNLFS-----TWVEDGQDFDIAYVRDALSAFGRLINPAHK 116

Query: 113 AIFED-FD-FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            +FE  F+   + +++L +           +    + I +        V+  IYE+LI +
Sbjct: 117 DLFEGIFNTLETGLSKLGENAASQTKAARSLIHLINDIPMKGK-QDYDVLGFIYEYLISQ 175

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   + A +F TP +V  L + ++ D      K        +YDPT G+G  L +   
Sbjct: 176 FAANAGKKAGEFYTPHEVSVLMSEIMADHLKDREKIQ------IYDPTSGSGSLLINIGQ 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            V +          +    QEL+  T+ +    + +R +  +         +   TL  D
Sbjct: 230 SVENRLGGEN---NIRYFAQELKKNTYNLTRMNLFMRGILPNDIIT-----RNADTLEDD 281

Query: 286 L-------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSML 337
                       R    +SNPP+ +KW+ +           +  R+ P GL   +     
Sbjct: 282 WPIDSNKTHEPLRVDAVVSNPPYSQKWDPEFK--------DKDPRYSPFGLAPKTKADYA 333

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    ++      G   IVL    LF G     E +IR  L+E + I+AI+ LP ++
Sbjct: 334 FLLHDLYHIKPD----GIMTIVLPHGVLFRGG---DEGKIRENLIEKNHIDAIIGLPANV 386

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L   K       V +I+A+  +        K   +     ++I+D  V
Sbjct: 387 FFGTGIPTIVLVL---KQTRNNDDVLIIDASKGFVKE----GKNNKLRACDIKRIVDTVV 439

Query: 458 SRENG-KFSRMLDYR 471
           SR++  KFS +++ +
Sbjct: 440 SRQSQLKFSALVNRQ 454


>gi|312130090|ref|YP_003997430.1| type i restrictioN-modification system, m subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311906636|gb|ADQ17077.1| type I restriction-modification system, M subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 515

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 110/493 (22%), Positives = 189/493 (38%), Gaps = 65/493 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
               L + IWK A ++ G     DF   +L     R +         A      Y  F  
Sbjct: 6   QRQELQSKIWKIANEVRGSVDGWDFKHFVLGTLFYRFISENFTDYIEAGDTSINYAKFKD 65

Query: 65  SNIDLE---SFVKVAGYSFY-------NTSEYSLSTLGSTNTRNNLESYIASFSD----- 109
           S+I  E     +K  GY  Y         ++   +   +T+ +        S +      
Sbjct: 66  SDIPEEVKVDAIKTKGYFIYPSQLFVNVEAKADDNKNLNTDLKQIFTDIQNSANGYPSEH 125

Query: 110 NAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHLI 163
           + K +F+DFD       +T+   EK   L  +    + +     +     +  + YE LI
Sbjct: 126 DIKGLFDDFDTTSTRLGNTVE--EKNKRLSAVLHGIAELNFGSFEETKIDLFGDAYEFLI 183

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP++V  L T + L             +  +YDP  G+G  L  A
Sbjct: 184 HNYAANAGKSGGEFFTPQEVSRLLTRIAL--------HKQTKVNKMYDPAVGSGALLLQA 235

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                +              GQE+   T+ +    M +  +  D       NI  G+TL+
Sbjct: 236 KKLYDEHFVEEG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIALGNTLT 284

Query: 284 KDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLM 340
              F   + F   +SNPP+   W    D            RF P   L   S     F+M
Sbjct: 285 DPHFLDDKPFDAIVSNPPYSVNWIGSDDPT-----LINDERFAPAGVLAPKSKADFAFVM 339

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF+ 
Sbjct: 340 HALSYL----SGTGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNLFYG 392

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+IA  + +LS  K +    K Q I+A+    +   +     I+ +    +IL ++  +E
Sbjct: 393 TSIAVNILVLSKHKAD---TKTQFIDASG--EAFFKKVTNNNILEEKHIAEILHLFDRKE 447

Query: 461 NGKF-SRMLDYRT 472
                +  +D + 
Sbjct: 448 TVDHVAVTVDNKQ 460


>gi|221195101|ref|ZP_03568157.1| type I restriction-modification system, M subunit [Atopobium rimae
           ATCC 49626]
 gi|221185004|gb|EEE17395.1| type I restriction-modification system, M subunit [Atopobium rimae
           ATCC 49626]
          Length = 859

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 109/497 (21%), Positives = 189/497 (38%), Gaps = 71/497 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKYLAFG 63
           +   LA+ IW +A ++    + +++   IL F   + L    E          +      
Sbjct: 2   NKQQLASRIWASANEIRSKIEASEYKDYILGFIFYKFLSEKEEEYLLKEGFDSQTMKNVS 61

Query: 64  GSNIDLESFVKVAGYSFYNTSEY--SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
             + ++  FV+     F        +  + G     +N+   +++FS      +    F 
Sbjct: 62  EDDQEIVKFVQDNVGYFIAYENLYSTWLSKGHDFDVSNVSDALSAFSRLVNPSYSHV-FD 120

Query: 122 STIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                LE            +   +  + +    I          V+  IYE+LI  F + 
Sbjct: 121 RVFETLETGLSKLGDTSGSRTKAISSLLQLIRDI-PMDARQGYDVLGYIYEYLISNFAAN 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP +V  L + ++        +        +YDPT G+G  L +    VA 
Sbjct: 180 AGKKAGEFYTPHEVSLLMSEIVAGHLKGRHEIE------IYDPTSGSGSLLVNIGQAVAK 233

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLSKDL- 286
              +      +  + QEL+  T+ +    +++R ++       + NI  + G TL  D  
Sbjct: 234 RSGN---KDSIKYYAQELKENTYNLTRMNLVMRGIK-------ASNIIARNGDTLEDDWP 283

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSM 336
                    +        +SNPP+ ++W+     V          RF G GL   S    
Sbjct: 284 WFSEGHPETYQPLFVDAVVSNPPYSQRWDPTDKEV--------DPRFNGFGLAPKSKADY 335

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L       G   IVL    LF G     E EIR+ L+E D I+AI+ LP +
Sbjct: 336 AFLLHDLYHLRPD----GIMTIVLPHGVLFRGGE---EGEIRKNLIERDHIDAIIGLPAN 388

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +L   K +  R  V +I+A+  +        K   +     R+I+D Y
Sbjct: 389 IFFGTGIPTIVMVL---KKQRTRSDVLIIDASKGYVKE----GKNNKLRASDIRRIVDAY 441

Query: 457 VSRENGK-FSRMLDYRT 472
             RE+ + F R++    
Sbjct: 442 ECREDIERFCRLVSKDE 458


>gi|308064292|gb|ADO06179.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Sat464]
          Length = 820

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 121/596 (20%), Positives = 222/596 (37%), Gaps = 87/596 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
            +  +  S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 48  DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V LI+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARARKG-VFLIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIATKQESEKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 470 SYLPKNEIEAYAPYFQVFKELKNTLFKKSDKEGYYALKTECQNIKDLITQSSEYQA 525


>gi|307251819|ref|ZP_07533721.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860726|gb|EFM92737.1| Type I restriction enzyme, modification subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 536

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 119/492 (24%), Positives = 196/492 (39%), Gaps = 70/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L   IW+ A ++ G     DF + +L     R +            E   
Sbjct: 21  MTAIQE-RAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIK 79

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------- 107
               S+ D       E  +K  GY  Y  S+   + + + +   NL + +          
Sbjct: 80  YATWSDDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHNNPNLNTELKDIFTSIESS 138

Query: 108 -----SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVM 155
                S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     + 
Sbjct: 139 AVGYDSENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLF 196

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG
Sbjct: 197 GDAYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACG 248

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     D              GQE+   T+ +    M +  +  D       +
Sbjct: 249 SGSLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 297

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL K  F   + F   +SNPP+  KW  D D            RF P   L   S
Sbjct: 298 ITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDSDPT-----LINDERFAPAGVLAPKS 352

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++
Sbjct: 353 KADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA---EQKIRQYLVDNNFVETVIS 405

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++    N      ++ D+   +I
Sbjct: 406 LAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKKETN----NNVLTDEHIAEI 458

Query: 453 LDIYVSRENGKF 464
           L ++  + +  +
Sbjct: 459 LKLFSDKADVDY 470


>gi|311064527|ref|YP_003971252.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
 gi|310866846|gb|ADP36215.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium bifidum PRL2010]
          Length = 855

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 105/518 (20%), Positives = 189/518 (36%), Gaps = 70/518 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAVREK-YLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L            + ++      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMGDEDLEELR 61

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113
             + +   +V+     F  Y+    +           N+   +++F  N           
Sbjct: 62  EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121

Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           IF+     + +++L      ++     +      I           +  IYE+LI  F S
Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA
Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D   
Sbjct: 233 RRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284

Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                     +        +SNPP+ + WE          + GE  RF  G+   S    
Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ LP +
Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +L   + +     V +++A+  +T       K   +     ++I+D  
Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442

Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
             +R+  KFSR++           +  P  +    +  
Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480


>gi|300869811|ref|YP_003784682.1| type-I restriction-modification system HsdM [Brachyspira pilosicoli
           95/1000]
 gi|300687510|gb|ADK30181.1| type-I restriction-modification system, HsdM [Brachyspira
           pilosicoli 95/1000]
          Length = 529

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 105/490 (21%), Positives = 186/490 (37%), Gaps = 79/490 (16%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----PTRSAVREK--YLAF 62
            L + IWK A+DL G     DF + +L     R +   L          +  ++  Y   
Sbjct: 12  ELHSKIWKIADDLRGSVDGWDFKQYVLGMLFYRYISEHLANYLNQNEWDSGNKEFNYADL 71

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----------NLESYIASFSDNAK 112
              +++      +    F+         +                 NL   +     + +
Sbjct: 72  DDKDVEDVKSDIIKEQGFFIYPSELFENIRKEANNQDSKKDSKEKHNLNEKLQKIFKDIE 131

Query: 113 -------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
                         +F+D D +S   +L     ++   L K+    + IEL         
Sbjct: 132 NSAKGTKSETKIAGLFDDIDVNS--NKLGPTVIKRNERLRKLINGIADIELGDFKDHSID 189

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   +F TP++V  L T + +             I+ +YDP 
Sbjct: 190 AFGDAYEYLMGMYASSAGKSGGEFFTPQEVSELLTKITITGKSE--------IKRVYDPA 241

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L      + D              GQE+   T+ +C   M +  +         
Sbjct: 242 CGSGSLLLKFKRILKDEEKKI------HYFGQEINITTYNLCRINMFLHDI-----GFEK 290

Query: 274 KNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPK 330
            +I  G TL++    + + F   +SNPP+  KWE + + +          R+ P   L  
Sbjct: 291 FDIAHGDTLTEPKHLSDEPFDAIVSNPPYSIKWEGEDNTL-----LINDPRYSPAGILAP 345

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     F++H  + L+        AAIV     ++ G A   E +IR++L++N+ IE I
Sbjct: 346 KSKADFAFILHSLSWLDTAAL----AAIVCFPGIMYRGGA---EQKIRKYLIDNNYIECI 398

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LF+ T+IAT + +LS  K      K   I+A++ +    N       ++D    
Sbjct: 399 IQLPDNLFYGTSIATCIMVLSKSK---IDSKTLFIDASEDYEKATN----NNKLSDKNIE 451

Query: 451 QILDIYVSRE 460
            IL  + +RE
Sbjct: 452 DILSYFKARE 461


>gi|294619473|ref|ZP_06698917.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
 gi|291594300|gb|EFF25730.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E1679]
          Length = 515

 Score =  273 bits (697), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 118/492 (23%), Positives = 197/492 (40%), Gaps = 69/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54
           M+  T   A L + IWK A D+ G     DF + +L     R +                
Sbjct: 1   MSSATQ-RAKLQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDDSVN 59

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD---- 109
             E       + I  ++  K  GY  Y  S+       + NT  +L + +A+ FS     
Sbjct: 60  YAELSDDVITNEIKEDAI-KTKGYFIY-PSQMFSRIAKTANTNESLNTDLAAIFSAIESS 117

Query: 110 --------NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVM 155
                   + K +F   DF +T  RL     +K   L  + K   G++    +     + 
Sbjct: 118 ANGYPSELDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQIDLF 175

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G
Sbjct: 176 GDAYEFLISNYAANAGKSGGEFFTPQSVSSLIAQLAIHKQTTINK--------IYDPAAG 227

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A                   +GQE+ P T+ +    M +  +  D       +
Sbjct: 228 SGSLLLQAKKQFDAHIIEDG------FYGQEINPTTYNLARMNMFLHNINYDKF-----H 276

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G+TL    +   K F   +SNPP+  KW   +D            RF P   L   S
Sbjct: 277 IALGNTLLDPHYGEDKPFDAIVSNPPYSVKWIGSEDPT-----LINDERFAPAGVLAPKS 331

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E I++
Sbjct: 332 KADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIIS 384

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LF+ T+IA  + +LS  K++    K Q I+A+ +    + E     I+ D+   +I
Sbjct: 385 LAPNLFYGTSIAVNILVLSKHKSD---NKTQFIDASGI-EFYKKETN-NNILTDEHIAKI 439

Query: 453 LDIYVSRENGKF 464
           + ++ S+E+  +
Sbjct: 440 MSMFDSKEDIDY 451


>gi|317014951|gb|ADU82387.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori Gambia94/24]
          Length = 817

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/595 (20%), Positives = 219/595 (36%), Gaps = 91/595 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N +        G  FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 45  AKNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
              A+L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-AKLGEGKAMTDTLSNLVKIFADLSLGTHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++           + +I +G  STLS   F      +
Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPFFIKNGMLQ 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D   ++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 259 TFDYVVANPPFSLKNWTDGLTIDPKSKQVINDHFNRFEDGTPPEKNGDFAFLLHIIKSLK 318

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 319 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + D   ++++D + + +   +   
Sbjct: 372 IVLDKENAHARKG-VFVIDASKDF---KKDGDKNR-LRDQDVQKMIDTFNAYKEIPYYSK 426

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 427 M---------------------VSLEAISLNDYNLNIPRYIASKQELEKDLFALINSHKA 465

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWI 582
            Y         +      K LK    K        A   +      +   + E+ 
Sbjct: 466 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSLEYQ 520


>gi|294670041|ref|ZP_06734998.1| type I restriction-modification system, M subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
 gi|291308162|gb|EFE49405.1| type I restriction-modification system, M subunit [Neisseria
           elongata subsp. glycolytica ATCC 29315]
          Length = 437

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/460 (22%), Positives = 177/460 (38%), Gaps = 62/460 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA------ 54
           M + T   A L   IWK A+++ G     DF + +L     R +         A      
Sbjct: 9   MMKSTQQRAQLHRQIWKIADEVRGAVDGWDFKQYVLGTLFYRFISENFTDYMQAGDSSID 68

Query: 55  VREKYLAFGGSNIDLESFVKV-----AGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFS 108
                 +     I  ++             F N  +E   +   +T  +    +  +S S
Sbjct: 69  YAAMSDSIITPEIKDDAVKVKGYFIYPSQLFCNIAAEAHQNEELNTKLKEIFIAIESSAS 128

Query: 109 -----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSN 157
                 + + +F+  DF +T +RL     +K   L  + K    ++    +     +  +
Sbjct: 129 GYPSEQDIRGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVEELDFGNFEDHHIDLFGD 186

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+LI  + +   +   +F TP++V  L   L +   + + K        +YDP CG+G
Sbjct: 187 AYEYLISNYAANAGKSGGEFFTPQNVSKLIARLAVHGQEKVNK--------IYDPACGSG 238

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +              GQE+   T+ +    M +  +  +       +I+
Sbjct: 239 SLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYN-----QFHIE 287

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G TL+       + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 288 LGDTLTNPKLKDGKPFDAIVSNPPYSINWIGSDDPT-----LINDDRFAPAGVLAPKSKA 342

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL 
Sbjct: 343 DFAFILHALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALA 395

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +LF+ T+IA  + +LS  K       +Q I+A+  +   
Sbjct: 396 PNLFYGTSIAVNILVLSKHK---DNTDIQFIDASGFFKKK 432


>gi|94263927|ref|ZP_01287730.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93455672|gb|EAT05851.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 425

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/447 (23%), Positives = 185/447 (41%), Gaps = 53/447 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M    G   SL ++IW  A  + G      + + ILP    +RL    +   + +  +  
Sbjct: 1   MANNNGRGKSLESWIWDAACSIRGAKDAPKYKEFILPLIFTKRLCDVFDDEVNRIAAEVG 60

Query: 61  AFGGSNIDLESFVKVAGYSFYNT--------SEYSLSTLGSTNTRNNLES---YIASFSD 109
           +   +   +++  K+    FY          S +S+    S      + +    IA  + 
Sbjct: 61  SRKKAFQLVKADHKLV--RFYLPLLPDDPEDSVWSVIRKLSDKIGEGVTTHMRAIAKENP 118

Query: 110 NAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             + I +  DF++T    R      L  + +  S   L  + V   ++   YE+LIR+F 
Sbjct: 119 GLQGIIDRVDFNATTHGQRDIDDDRLSNLIEAISTKRLGLEDVEADIIGKSYEYLIRKFA 178

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               + A +F TP +V  + + +L           P     +YDPTCG+GG L      +
Sbjct: 179 EGGGQSAGEFYTPPEVGAIMSKVL----------QPEPGMEIYDPTCGSGGLLIKCEIAM 228

Query: 228 ADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            +     K        +GQE   +T A+    M+I  +E +        I+ G T     
Sbjct: 229 EEAAKGKKRTVAPLKLYGQEYTADTWAMANMNMIIHDMEGE--------IEIGDTFKNPK 280

Query: 287 FTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF--GPGLPKISDGSMLFL 339
           F  K+     F   ++NP + + W       E ++ N EL RF  G G P        ++
Sbjct: 281 FRNKQGKLRTFDRVVANPMWNQDW-----FTEADYDNDELDRFPAGAGFPGKFSADWGWV 335

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG---ESEIRRWLLENDLIEAIVALPTD 396
            H+   L       GRAA+VL +     G   +G   E  +R+W +++DLIE+++ LP +
Sbjct: 336 QHMHASLNEK----GRAAVVLDTGAASRGSGNAGTNKEKTVRQWFVDHDLIESVLYLPEN 391

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQ 423
           LF+ T     +  L+  K+++R+GKV 
Sbjct: 392 LFYNTTAPGIVLFLNKAKSKKRKGKVL 418


>gi|167854665|ref|ZP_02477445.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus parasuis 29755]
 gi|167854202|gb|EDS25436.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus parasuis 29755]
          Length = 515

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/490 (22%), Positives = 188/490 (38%), Gaps = 65/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M       A L   IW+ A ++ G     DF + +L     R +    +       E   
Sbjct: 1   MIISIQQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISENFKAYIEQGDESVN 60

Query: 61  AFGGSNIDL------ESFVKVAGYSFYNTSEY-SLSTLGSTN---------TRNNLESYI 104
               S+ D       +  +K  GY  Y +  + ++     TN            ++E+  
Sbjct: 61  YAQFSDDDPILEQIKDDTIKSKGYFIYPSQLFENVVKDAHTNPTLNIELAEIFADIENSA 120

Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
             +  + + I   F DF +   RL     +K   L  + K    ++          +  +
Sbjct: 121 NGY-PSEQDIKGLFADFDTRSNRLGNTVADKNKRLTAVLKGVEELDFGKFEDNHIDLFGD 179

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP++V  L   L L     + K        +YDP  G+G
Sbjct: 180 AYEFLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKTVNK--------IYDPAAGSG 231

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D              GQE+   T+ +    M +  +  D       +I 
Sbjct: 232 SLLLQAKKQFDDHVIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIA 280

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    F   + F   +SNPP+  +W  D++            RF P   L   S  
Sbjct: 281 LGNTLLDPQFQNDKPFDAIVSNPPYSIRWIGDENPT-----LINDERFAPAGILAPKSKA 335

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL 
Sbjct: 336 DFAFILHALSYLSTR----GRAAIVTFPGIFYRGGA---EQKIRKYLVDNNYVETVIALA 388

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+IA  + +LS  K +    K Q I+A+ L+    N      ++ D+   +I+ 
Sbjct: 389 PNLFYGTSIAVNILVLSKHKPD---NKTQFIDASSLFKKETN----NNVLTDEHIAEIIK 441

Query: 455 IYVSRENGKF 464
           ++  + +   
Sbjct: 442 LFSEKTDVPH 451


>gi|326406200|gb|ADZ63271.1| type I restriction-modification system, M subunit [Lactococcus
           lactis subsp. lactis CV56]
          Length = 859

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 103/527 (19%), Positives = 188/527 (35%), Gaps = 79/527 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT------------RS 53
            ++  +   +W  A +L G    + +   +L     + L      T              
Sbjct: 2   TTSEEIKKRLWDGATELRGSMDASRYKDYMLGLMFYKFLSDKTLETFRNTAGLGRISESD 61

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASF-- 107
            V E          +L+  ++     F          +   NT +     +   + SF  
Sbjct: 62  LVEEYTQNREDLGEELDKMIQQVLGYFVAPEYLYQKWIKDINTGDFEVQKVTDSLNSFEK 121

Query: 108 -------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155
                  S + K +F       T   L     E++  +  +   F+ +++        V+
Sbjct: 122 TIAVTGESADFKGLFSSSTLDLTDTALGSNLNERSKNIKALINLFADLDMV-ALQKSDVL 180

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI +F  E  + A +F TPR V  +   ++              I+++YDPT G
Sbjct: 181 GDAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIVA---------KTSNIQSIYDPTVG 231

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L     H+       ++   L  +GQE    T+ +    +L+  +  +        
Sbjct: 232 SGSLLLTVGKHL-----SKEVQKDLSYYGQEKNTATYNLTRMNLLLHGVRPEKMT----- 281

Query: 276 IQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG- 327
           ++   TLS D            +F   + NPP+            K        RF    
Sbjct: 282 VRNADTLSHDWPEDPSRPNVGVQFDAVVMNPPYSL------KDWNKAGLKISDPRFEIAG 335

Query: 328 -LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            LP  S G   FL+H    L       G  AIVL    LF G     E +IR+ LL+ + 
Sbjct: 336 TLPPDSKGDFAFLLHGLFHL----GTNGTMAIVLPHGVLFRGG---SEGDIRQRLLDKNQ 388

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+ I+ LP+ +F  T I   + IL   +       V +I+A+  +  +     K+ ++ +
Sbjct: 389 IDTIIGLPSGMFTNTGIPVIVMILKKNRP--VGEPVLVIDASRSFIKV----GKQNVLQE 442

Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
               +I+D Y SR   + +S +  ++        +  P  +    D+
Sbjct: 443 KDIAKIVDTYSSRREIEGYSYLATHKEIIANEWNMNIPRYVEADNDE 489


>gi|315585917|gb|ADU40298.1| type I restriction-modification system protein [Helicobacter pylori
           35A]
          Length = 820

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 120/596 (20%), Positives = 221/596 (37%), Gaps = 87/596 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
            +  +  S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+
Sbjct: 48  DAKNNTYSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNGLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 210 KNGLTIYGQEKDISTTALCRMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 470 SYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525


>gi|295107905|emb|CBL21858.1| type I restriction system adenine methylase (hsdM) [Ruminococcus
           obeum A2-162]
          Length = 852

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 191/496 (38%), Gaps = 70/496 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS- 65
           +   LAN IW++A  +    +  ++   IL F   + L      T     ++        
Sbjct: 2   NKQQLANRIWESANRMRSKIEANEYKDYILGFIFYKYLSD----TEVEWLKENDFTDEDI 57

Query: 66  --NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASF----SDNAKAIF 115
               D E+   V     Y  S      +   +G+  + +N+   +++F    S   K +F
Sbjct: 58  RTLADFETVKYVQDNLGYFISYENLYSTWINMGNDFSVSNVTDALSAFSRLISPTHKPVF 117

Query: 116 EDF--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           E+      + +++L          +  + +    I          V+  IYE+LI +F S
Sbjct: 118 ENIFRTLETGLSKLGDTSGARTKAIRGLLQLIRDI-PMDGRQDYDVLGFIYEYLIEKFAS 176

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        +        +YDPT G+G  L    N   
Sbjct: 177 NAGKKAGEFYTPHEVSFLMSEIVAHHLRDRNEIK------IYDPTSGSGSLLI---NIGR 227

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +      +  + QEL+  T+ +    +++R ++ D         + G TL +D   
Sbjct: 228 SVAKYVGSDNNIKYYAQELKENTYNLTRMNLIMRGIKPDNIVT-----RNGDTLEEDWPF 282

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                    +        +SNPP+ + W+      +         RF  GL         
Sbjct: 283 FDDNDPVNTYDPVYVDAVVSNPPYSQVWDPANKEHDPR-----YSRF--GLAPKGKADYA 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    ++      G   IVL    LF G     E EIR+ L+EN+ I+ I+ LP ++
Sbjct: 336 FLLHDLFHMKPD----GVMTIVLPHGVLFRGGE---EGEIRKKLIENNHIDTIIGLPANI 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T I T + +L   K +     + +I+A+  +        K   +     ++I+D+  
Sbjct: 389 FYGTGIPTIVMVL---KQKRDNTDILIIDASKGFVKD----GKNNKLRACDIKKIVDVVK 441

Query: 458 SRENGK-FSRMLDYRT 472
           +R+  + +SR++    
Sbjct: 442 ARKKIERYSRVITKDE 457


>gi|171779403|ref|ZP_02920367.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282020|gb|EDT47451.1| hypothetical protein STRINF_01248 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 850

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/498 (21%), Positives = 191/498 (38%), Gaps = 72/498 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY------- 59
           +   LA+ IW++A  +    +  ++   IL F   + L            ++        
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLS----EQEEKYLKENDWTDKYL 57

Query: 60  -LAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFS----DNAKA 113
                     +ES  K  GY   YN    +    GS  +  ++   +++FS       K 
Sbjct: 58  CELTEEDPEVVESIQKNLGYFISYNNLFSTWIKKGSDFSVQDVRDALSAFSRLIDSAHKD 117

Query: 114 IFED-FD-FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           +FE  FD   + +++L +        +  +      I +        V+  IYE+LI  F
Sbjct: 118 VFEGVFDTLQTGLSKLGEGSASQTKAISDLIYLIRDIPMDGK-QDYDVLGFIYEYLISMF 176

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   + A +F TP +V  L + ++ +               +YDPT G+G  L    N 
Sbjct: 177 AANAGKKAGEFYTPHEVSLLMSEIVAEHLKDRESIK------IYDPTSGSGSLLI---NI 227

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                 +      +  + QEL+  T+ +    +++R +  D         + G TL  D 
Sbjct: 228 GKSASKYISNKDNIKYYAQELKQNTYNLTRMNLVMRGILPDNIVT-----RNGDTLEDDW 282

Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                      +        +SNPP+ + W+      +         RF  GL       
Sbjct: 283 PYFDDKDPIATYEPLYVDAVVSNPPYSQSWDPTDKETDPR-----YARF--GLAPKGKAD 335

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL+H    ++      G   IVL    LF G     E EIR+ L+E + I+AI+ LP+
Sbjct: 336 YAFLLHDLFHIKSD----GIMTIVLPHGVLFRGGE---EGEIRKNLIEQNHIDAIIGLPS 388

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++FF T I T + IL   K +     V +++A+  +        K   +     ++I+D+
Sbjct: 389 NIFFGTGIPTIIMIL---KQKRENTDVLVVDASKGFIK----SGKNNKLRASDIKRIVDV 441

Query: 456 YVSREN-GKFSRMLDYRT 472
            ++REN   FSR++    
Sbjct: 442 VINRENVANFSRVVSRDE 459


>gi|296454640|ref|YP_003661783.1| type I restriction system adenine methylase HsdM [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296184071|gb|ADH00953.1| type I restriction system adenine methylase HsdM [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 855

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 188/518 (36%), Gaps = 70/518 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAF 62
           +   LA  IW++A  +    +  ++   IL F   + L       L        +     
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEIAHLRAEDWGAEDLKGLD 61

Query: 63  GGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113
                 ++    + GY   YN    +        T  ++   +++F  N           
Sbjct: 62  ENDAETVQYVRDLCGYFISYNNLFSTWIASQGDFTIADVRDALSAFERNIDPARKRVFVG 121

Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           IF+     + +++L      ++  +  +      I           +  IYE+LI  F S
Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAVRDLICLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA
Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D   
Sbjct: 233 RRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284

Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                     +        +SNPP+ + WE          + GE  RF  G+   S    
Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L       G   IVL    LF G     E  IRR L+E   I+AI+ LP +
Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVEKHHIQAIIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +L   + +     V +++A+  +T       K   +     ++I+D  
Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442

Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
             +R+  KFSR++           +  P  +    +  
Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480


>gi|317182738|dbj|BAJ60522.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 820

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 119/583 (20%), Positives = 217/583 (37%), Gaps = 87/583 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
            +  +  S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+
Sbjct: 48  DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMVDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIATKQESEKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            Y         +      K LK    K        A   +   
Sbjct: 470 SYLPKNEIEAYAPYFKVFKELKNTLFKKSDKEGYYALKTECEN 512


>gi|317179715|dbj|BAJ57503.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 817

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 118/583 (20%), Positives = 214/583 (36%), Gaps = 91/583 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N    +     G  FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 45  ARNNTDSAIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAEIAERNDLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAIIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 206 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDIFNRFEDGTPPEKNGDFAFLLHIIKSLK 318

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 319 DT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 372 IVLDKENACTRKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 426

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 427 M---------------------VSLEEISTNDYNLNIARYIAAKQESEKDLFALINSHKA 465

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            Y         +      K LK    K        A   +   
Sbjct: 466 SYLPKNEIKAYAPYFKVFKELKNTLFKKSDKEGYCALKTECEN 508


>gi|289624201|ref|ZP_06457155.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|330869549|gb|EGH04258.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 473

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/477 (23%), Positives = 177/477 (37%), Gaps = 68/477 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP---------T 51
           MT      A L   IW  A D+ G     DF + +L     R +                
Sbjct: 1   MT-SAQQRADLQRQIWAIANDVRGAVDGWDFKQYVLGTLFYRFISENFVDYITGGDSSVD 59

Query: 52  RSAVREKY---LAFGGSNIDLESFVKVAGYSFYNT----SEYSLSTLGSTNTRNNLESYI 104
            +A+ +      A     I  + +       F N     S             + +E+  
Sbjct: 60  YAAMEDDDPLIAAAKDDAIKTKGYFIAPSQLFSNVAAKASTNDSLNTDLKRIFDAIENSP 119

Query: 105 ASFSDN--AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-S 156
             ++     K +F   DF +T  RL     +K   L  + K  + +E          +  
Sbjct: 120 NGYASEQYIKGLFA--DFDTTSNRLGNTVADKNKRLADVLKGVNKLEFGSFDASHIDLFG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+
Sbjct: 178 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A  H                 GQE+   T+ +    M +  +  D       +I
Sbjct: 230 GSLLLQAKKHFDAHVIQDG------FFGQEVNHTTYNLARMNMFLHNINYDKF-----DI 278

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
           Q G TL    F   + F   +SNPP+  KW    D            RF P   L   S 
Sbjct: 279 QLGDTLRHPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSK 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ +E +++L
Sbjct: 334 ADFAFVLHALSYL----SGRGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             +LFF T IA  + +LS  K +      Q I+A+ L+     +G    ++ +   R
Sbjct: 387 APNLFFGTTIAVNILVLSKHKLDTTT---QFIDASALF----KKGTNNNLLENAHIR 436


>gi|161528114|ref|YP_001581940.1| type I restriction-modification system subunit M [Nitrosopumilus
           maritimus SCM1]
 gi|160339415|gb|ABX12502.1| type I restriction-modification system, M subunit [Nitrosopumilus
           maritimus SCM1]
          Length = 523

 Score =  272 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 202/560 (36%), Gaps = 81/560 (14%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           ++   +   L   ++  A+ L      ++  K +L    L+RL    E     +      
Sbjct: 3   SDQKLTFEQLEQRLFDAADILRKHLDASENRKPVLTLLFLKRLNDIFEENVEKLM----- 57

Query: 62  FGGSNIDLESFVKVAGYS-FYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKAIF--- 115
                +  +       +  FY   +   + L +   +  + +        D  +      
Sbjct: 58  -KDEGLSKKEAENKRRHPIFYLPEDTRWNKLQNVSEDVGSKIIEICKKIEDANQKKLGGT 116

Query: 116 ---EDFDFSSTIARLEKAGLLYKICKNFSGIEL------HPDTVPDRVMSNIYEHLIRRF 166
               +F+             L K+  +FS  +       + D   + +  + YE L+  F
Sbjct: 117 MMVSEFNIKEKYPD----TALVKLIDHFSTTDEGYFRLRNSDLENEDIFGDAYEQLLEMF 172

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE  +    F TPR VV L   L+           P     + DPTCG+GG L  +  +
Sbjct: 173 ASETKKKGGQFYTPRKVVQLLVELM----------EPKYDYRINDPTCGSGGMLIHSRQY 222

Query: 227 VADCGSHHKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           V       K            L  HGQ+   +T  +C   M+I  +        S +I+ 
Sbjct: 223 VEKSLKKEKKSSKEIEELLKNLTLHGQDSNIDTVNMCKMNMVIHGV-------PSFSIEW 275

Query: 279 GSTLSKDLFTGK----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD- 333
           G  L    F        +   L+N PF + WE          +N   GRF  G+    D 
Sbjct: 276 GDVLESPKFVKDGKLIEYDRVLANFPFSENWEASGK------ENDGYGRFKYGIAPAKDK 329

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL--------END 385
               F++H+ + L    N  G+AAIV S   LF G   S E +IR  ++        + D
Sbjct: 330 ADFAFILHMLSSL----NENGKAAIVCSQGVLFRG---SSEQKIRENMIAGNKDENLQGD 382

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +IEAI+ALP  LF+ T I   + IL+  K +ER+ K+  I A + +      GK R  + 
Sbjct: 383 MIEAIIALPVALFYGTGIPACVLILNKNKPKERKNKILFIYAANEFQE----GKVRNKLR 438

Query: 446 DDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           D     I+  + + +   K+  + +          +  P  +    ++  +         
Sbjct: 439 DKDIEHIVKAFKAFKDEDKYCHVAELDEIRENEFNLNVPRYVDISEEEKIIDIQATIDEL 498

Query: 505 RKLSPLHQSFWLDILKPMMQ 524
           +KL        L + + + +
Sbjct: 499 KKLDKERDELELKVKQDLKE 518


>gi|320536229|ref|ZP_08036275.1| type I restriction-modification system, M subunit [Treponema
           phagedenis F0421]
 gi|320146931|gb|EFW38501.1| type I restriction-modification system, M subunit [Treponema
           phagedenis F0421]
          Length = 526

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 124/513 (24%), Positives = 197/513 (38%), Gaps = 84/513 (16%)

Query: 1   MTEFTG------SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------- 46
           M   T         A L   IW  A+++ G     DF + IL     R +          
Sbjct: 1   MANNTNGSNGMVQRAELHRKIWAIADEVRGAVDGWDFKQYILGILFYRFISENMMEFFNS 60

Query: 47  --------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
                     +  + + +E    F  + ++ + F  +    F N  +   +   + N   
Sbjct: 61  AEHEAGDPEFDYAKISDKEAEKDFRPNTVEAKGFFILPSQLFKNVVK---TARKNENLNT 117

Query: 99  NLESYIASF--------SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIE 144
           +L +   S         S+N  K +FED D  +T  RL     EK   L  I    S I 
Sbjct: 118 DLANIFKSIESSAVGFKSENDIKGLFEDVD--TTSNRLGGTVAEKNSRLADILIGISEIN 175

Query: 145 LHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                  D     + YE+LI  + S   +   +F TP+ V  L   L++D    + K   
Sbjct: 176 FGNFQDNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTNVNK--- 232

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +YDPTCG+G  L        +              GQE+      +    M +  
Sbjct: 233 -----VYDPTCGSGSLLLQMKKQFEEHIIDEG------FFGQEINMTNFNLARMNMFLHN 281

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +  +     + +I++G TL   L   ++ F   +SNPP+  KW  D D            
Sbjct: 282 VNYN-----NFSIKRGDTLLNPLHNNEKPFDAIVSNPPYSIKWIGDDDPT-----LINDA 331

Query: 323 RFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           RF P   L   S     F+MH  + L       GRAAIV      +   A   E  IR++
Sbjct: 332 RFAPAGKLAPKSYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---ELTIRKY 384

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L++N+ I+ I+ LP +LFF T+IAT + +++  KTE    K   I+A   +    N    
Sbjct: 385 LVDNNFIDCIIQLPENLFFGTSIATCVLVMAKNKTE---NKTLFIDAGKEFKKETN---- 437

Query: 441 RRIINDDQRRQILDIYVSRENGKF-SRMLDYRT 472
             I+ D    +I+  +  R N ++ SR++D   
Sbjct: 438 NNILEDKNIEKIVAEFRDRTNIEYFSRLVDNSE 470


>gi|269115295|ref|YP_003303058.1| Type I restriction enzyme M protein [Mycoplasma hominis]
 gi|268322920|emb|CAX37655.1| Type I restriction enzyme M protein [Mycoplasma hominis ATCC 23114]
          Length = 520

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 111/505 (21%), Positives = 192/505 (38%), Gaps = 74/505 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----RSAV 55
           M         L   IW  A  L G     DF + +L     R +   +        R A 
Sbjct: 1   MAINNQERDELHKKIWDIANRLRGSIDGWDFKQYVLGIMFYRYISENIATYANNRQRQAG 60

Query: 56  REKYLAFGGSNIDL----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
            E +     S+ +     +  +   G+ F   SE  ++ + +  T N L   + +   N 
Sbjct: 61  IEDFDYTTLSDEEALTGRDDLINEKGF-FILPSELFINVVKNATTNNCLNETLDNIFKNI 119

Query: 112 K-------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152
           +              +F D D +S   +L     E+   L  I +  + ++L        
Sbjct: 120 ESSAKGQQSENDFSGLFNDVDVNSQ--KLGRSVNERNKKLAAILQEIAAMKLGNYQDNSI 177

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T + +             +  +YDP
Sbjct: 178 DAFGDAYEYLMSMYASNAGKSGGEYFTPQEVSELLTKIAVFNKK--------KVNRVYDP 229

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L   +  +               +GQE+   T+ +C   M +  +  D     
Sbjct: 230 ACGSGSLLLQTIKVLGKENIKDG------FYGQEVNLTTYNLCRINMFLHDIGFDKF--- 280

Query: 273 SKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
             NI  G TL       +R   F   +SNPP+  KWE + + +          RF P   
Sbjct: 281 --NIYNGDTLLSPSPEHQRKEPFDVIVSNPPYSIKWEGEDNPL-----LINDQRFSPAGI 333

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     F++H  + L       G AAIV     ++ G A   E +IR++L+EN+ I
Sbjct: 334 LAPKSKADFAFILHSLSWLATD----GVAAIVCFPGIMYRGGA---EQKIRQYLVENNFI 386

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           +AI+ LP++LFF T+I+T + +L   K       +  I+A+  +  + N       +   
Sbjct: 387 DAIIQLPSNLFFGTSISTCIMVLKKSK---IDNNILFIDASQEFLKVTN----NNKLTSQ 439

Query: 448 QRRQILDIYVSRENGKFSRMLDYRT 472
               I+D Y  R++  +   L    
Sbjct: 440 NINNIIDYYGQRKDISYISKLASVE 464


>gi|253315161|ref|ZP_04838374.1| type I restriction enzyme EcoR124II M protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
          Length = 446

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 107/468 (22%), Positives = 181/468 (38%), Gaps = 68/468 (14%)

Query: 25  DFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNIDLESFVKVAGYS 79
           +   ++F   IL     R L    E   +            A+       +   ++    
Sbjct: 1   NMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQV 60

Query: 80  FYNTSE---------------YSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST 123
            Y                   + +  L +T  R    S +   S+N    +F D D SST
Sbjct: 61  GYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSST 119

Query: 124 ---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                  E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP
Sbjct: 120 RLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTP 179

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + V  +   ++ D  D         +R +YDPTCG+G  L              K   + 
Sbjct: 180 QQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVY 221

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              GQE    T+ +    ML+  +  +        I+   TL    F G  F   ++NPP
Sbjct: 222 RYFGQERNNTTYNLARMNMLLHDVRYENFE-----IRNDDTLENPAFLGNTFDAVIANPP 276

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +  KW  D      E  +G        L   S     F+ H+ + L+      G  A+VL
Sbjct: 277 YSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVL 327

Query: 361 SSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
               LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++ 
Sbjct: 328 PHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQD 382

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
             V  I+A++ +      GK +  ++D Q  +I+D Y  +    K+S 
Sbjct: 383 DNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKATIDKYSY 426


>gi|315636819|ref|ZP_07892044.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315478873|gb|EFU69581.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 811

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 118/564 (20%), Positives = 220/564 (39%), Gaps = 83/564 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                  L + +W +A++L G    +++   +L    ++ +                   
Sbjct: 1   MAIKKTELYSSLWASADELRGGMDASEYKNYVLTLLFMKYVSD----------------- 43

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
             +          G SF       +  L       + +   IA  ++  + K I +  DF
Sbjct: 44  KKDDANSLIDVPQGASFK-----DMVALDGDKEIGDKINKIIAKLAEKNDLKGIIDTADF 98

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           + +  +L         L K+ K F  + L  +T   D ++ + YE+L+R F +E  +   
Sbjct: 99  NDS-TKLGSGKQMVDTLSKLIKIFDNLNLGSNTAEGDDLLGDAYEYLMRHFATESGKSKG 157

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++         E+    +T+YDPTCG+G  L  A +          
Sbjct: 158 QFYTPSEVSTILPQII------GIDENTTAKQTIYDPTCGSGSLLLKASSL--------- 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK--- 290
            P  L  +GQE E  T A+C   M++         +    I  G  STL+   F  +   
Sbjct: 203 APNGLSIYGQEKEVSTTALCKMNMILHN-------NAEAVIAPGGQSTLANPFFEDEPDV 255

Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
               F + ++NPPF  K   +           +  RF G   P   +G   FL+H+   +
Sbjct: 256 KLTTFDFVVANPPFSLKAWTNGVESPD-----KYSRFEGFVTPPEKNGDYAFLLHICKSI 310

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ A++L    LF G A   E  IR  L+    I+ I+ LP +LF+ T I   
Sbjct: 311 KS----NGKGAVILPHGVLFRGNA---EGVIREKLIRKGWIKGIIGLPANLFYGTGIPAC 363

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           + +L   K + R G + +I+A+  +   + +G K R +      +I+D +      + +S
Sbjct: 364 IIVLDKEKAQNRSG-IFMIDASKGF---KKDGNKNR-LRSQDVHKIVDTFNKTLEIEKYS 418

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSFWLDILKPMM 523
           +M+  R        +  P  +    +   +  L A +      +   +   + D+ K + 
Sbjct: 419 KMVTLRDIELNEYNLNIPRYIDSS-ENEDIQDLYAHLNGGIPNVDIENLKEYWDVFKTLK 477

Query: 524 QQIYPYGWAESFVKESIKSNEAKT 547
            +++     + +    I+SNE K+
Sbjct: 478 SELFAPNIKDGYSNAKIESNEIKS 501


>gi|310287614|ref|YP_003938872.1| HsdM-like protein of Type I restriction-modification system
           [Bifidobacterium bifidum S17]
 gi|309251550|gb|ADO53298.1| HsdM-like protein of Type I restriction-modification system
           [Bifidobacterium bifidum S17]
          Length = 855

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 106/518 (20%), Positives = 188/518 (36%), Gaps = 70/518 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAV-REKYLAFG 63
           +   LA  IW++A  +    +  ++   IL F   + L            +  E      
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVTRLHADGMGNEDLEELR 61

Query: 64  GSNIDLESFVKVAGYSF--YNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--------A 113
             + +   +V+     F  Y+    +           N+   +++F  N           
Sbjct: 62  EDDTETAQYVRDLCGYFISYDNLFSTWVAKKGDFAIANVRDALSAFDRNIDPARKRVFAG 121

Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           IF+     + +++L      ++     +      I           +  IYE+LI  F S
Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA
Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D   
Sbjct: 233 RRNGN---PNDIRYYAQELKENTYNLTRMNLVMRGILPDNIVA-----RNGDTLKSDWPW 284

Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                     +        +SNPP+ + WE          + GE  RF  G+   S    
Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPP--------EAGEDIRFEYGIAPKSKADY 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ LP +
Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +L   + +     V +++A+  +T       K   +     ++I+D  
Sbjct: 390 IFFGTGIPTIVMVLRKHRDD---DHVLIVDASKYFTKE----GKNNKLRASDIKRIVDAV 442

Query: 457 -VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
             +R+  KFSR++           +  P  +    +  
Sbjct: 443 TGNRDVDKFSRLVGIDEIRQNDYNLNIPRYVDSSDNAE 480


>gi|288563204|pdb|3LKD|A Chain A, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
 gi|288563205|pdb|3LKD|B Chain B, Crystal Structure Of The Type I Restriction-Modification
           System Methyltransferase Subunit From Streptococcus
           Thermophilus, Northeast Structural Genomics Consortium
           Target Sur80
          Length = 542

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/594 (20%), Positives = 209/594 (35%), Gaps = 94/594 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEP 50
           +E T ++ SL   +W +A+ L       D+   +L     + L                 
Sbjct: 2   SETTQTSQSLYQALWNSADVLRSKXDANDYKSYLLGXVFYKYLSDKXLFFVAETXEEETE 61

Query: 51  TRSAVREKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGS--TNTRNNLESYIAS 106
           +       Y  +       E  +       S+    + + + L     +    LE     
Sbjct: 62  SLDEALAVYRKYYEDEETHEDLLAVITDEXSYAIHPDLTFTALVERVNDGSFQLEDLAQG 121

Query: 107 F-----SDNAKA-IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM 155
           F     SD     +FED D  S   +L     ++   +  + K  + +++         +
Sbjct: 122 FRDIEQSDELYENLFEDIDLYSK--KLGATPQKQNQTVAAVXKELAVLDV--AGHAGDXL 177

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+LI +F ++  + A +F TP+ V  L T +     +           TLYD T G
Sbjct: 178 GDAYEYLIGQFATDSGKKAGEFYTPQPVAKLXTQIAFLGRED------KQGFTLYDATXG 231

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +A  +        + P  +V  GQEL   T+ +     ++  +  + +      
Sbjct: 232 SGSLLLNAKRY-------SRQPQTVVYFGQELNTSTYNLARXNXILHGVPIENQF----- 279

Query: 276 IQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKI 331
           +    TL +D        F   L NPP+  KW       +         RF P   L   
Sbjct: 280 LHNADTLDEDWPTQEPTNFDGVLXNPPYSAKWSASSGFXD-------DPRFSPFGKLAPK 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE   I+ ++
Sbjct: 333 SKADFAFLLHGYYHLKQD---NGVXAIVLPHGVLFRGNA---EGTIRKALLEEGAIDTVI 386

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T+I T + IL   +T      V  I+A+  +      GK + I  D    +
Sbjct: 387 GLPANIFFNTSIPTTVIILKKNRTNR---DVYFIDASKEFDK----GKNQNIXTDAHIEK 439

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           IL+ Y SRE+                       + + +     +   + ++   +     
Sbjct: 440 ILNAYKSREDID---------------------KFAHLASFEEIVENDYNLNIPRYVDTF 478

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK-SFIVAFINAF 564
           +   ++ L  ++ +I            S+     +           + AF+ AF
Sbjct: 479 EEEEVEPLTEIVAKINQTNATIESQTASLLDXLGQLHGTTPEADEELKAFVKAF 532


>gi|332674320|gb|AEE71137.1| type I restriction enzyme M protein [Helicobacter pylori 83]
          Length = 820

 Score =  271 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 120/596 (20%), Positives = 221/596 (37%), Gaps = 87/596 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
            +  +  S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+
Sbjct: 48  DAKNNTYSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGTIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARARKG-VFMIDASKDF---KKDGNKSR-LREQDVQKMIDTFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +     Q    D+   +     
Sbjct: 431 M---------------------VSLEEISANDYNLNIARYIAAKQESEKDLFALINSHKA 469

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 470 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSEFQA 525


>gi|208435398|ref|YP_002267064.1| typeI restriction enzyme M protein [Helicobacter pylori G27]
 gi|208433327|gb|ACI28198.1| typeI restriction enzyme M protein [Helicobacter pylori G27]
          Length = 814

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 119/562 (21%), Positives = 220/562 (39%), Gaps = 73/562 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N +        G  FY   E  L+  G+    + L   IA  ++  + + + +  DF+
Sbjct: 45  ARNNNFSEIEVPQG-CFY---EDILALEGNKEIGDKLNKIIAKIAERNDLEGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++           + +I +G  STLS  LF      K
Sbjct: 206 KNGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPLFIENGMLK 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSLK 318

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 319 NT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +    +S+
Sbjct: 372 IVLDKENARTRKG-VFVIDASKDF---KKDGNKNR-LREQDVQKMIDTFNAYKEIPHYSK 426

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           M+           +  P  ++   +      A + +     K        +  + K +  
Sbjct: 427 MVSLEEISANDYNLNIPRYITTKQESEKDLFALINSPSYLPKNEIKAYDPYFQVFKELKN 486

Query: 525 QIYPYGWAESFVKESIKSNEAK 546
            ++     E +     +    K
Sbjct: 487 TLFKKSDKEGYYALKTECENIK 508


>gi|257889088|ref|ZP_05668741.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,141,733]
 gi|257825160|gb|EEV52074.1| type I restriction-modification system M subunit [Enterococcus
           faecium 1,141,733]
          Length = 512

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/527 (18%), Positives = 201/527 (38%), Gaps = 69/527 (13%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70
              +++   +L     + L   L            E+Y                     +
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRN------NLESYIASFSDN---AKAIFEDFDFS 121
               +     Y  +   L  + +   +       +L       S        +F+D D  
Sbjct: 61  LIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQLSSTYNQFNGLFDDVDLQ 120

Query: 122 ST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           S        ++   + ++ K  + +++        V+ + YE LI +F SE  + A +F 
Sbjct: 121 SKKLGTDEQQRNVTITEVIKKLNDVDVL--GHDGDVIGDAYEFLISQFASEAGKKAGEFY 178

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +   ++         +      +++DPT G+G  + +  N++           
Sbjct: 179 TPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT-------HTD 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CL 296
            +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T + + +   +
Sbjct: 226 NVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTDEPYTFDAVV 280

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+   W  D   ++         R+G  L   S     FL+H    L+      G  
Sbjct: 281 MNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKET----GTM 331

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L   +  
Sbjct: 332 AIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQT 388

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGY 475
                +  I+A+  +      GK +  ++++  ++IL+ Y  R++ + ++ +  +     
Sbjct: 389 R---DILFIDASREFVK----GKNQNKLSEENIQKILETYAERKDVEKYAHLATFDEIKE 441

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
               +  P  +    ++  +  +      +K+    Q    ++L+ +
Sbjct: 442 NDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 488


>gi|56419915|ref|YP_147233.1| type I restriction-modification system DNA methylase [Geobacillus
           kaustophilus HTA426]
 gi|56379757|dbj|BAD75665.1| type I restriction-modification system DNA methylase [Geobacillus
           kaustophilus HTA426]
          Length = 503

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 97/547 (17%), Positives = 193/547 (35%), Gaps = 73/547 (13%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-- 74
           + A  + G     D+   +LP   LR L    E  R  + +     G      +  ++  
Sbjct: 3   EAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEQRRKELEQIVKDPGSDWYTEDDEMRQI 62

Query: 75  --------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    A   F    E S S +     + N++  + +     +   E+ +    + R
Sbjct: 63  IITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGILPR 120

Query: 127 LEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + +   L       + + FS      +T     ++   YE+ I  F +       +F TP
Sbjct: 121 IYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGEFFTP 180

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V L  A+L                 ++DP CG+GG    +  +             L
Sbjct: 181 SSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKHAL 222

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +GQE    T  +    +L+  + ++        I+ G +L  D F   +  Y ++NPP
Sbjct: 223 SFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYVIANPP 274

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F       +     +  +    R    +   S+ + +++ H    L    N  G A  V+
Sbjct: 275 FN------QKDWGADRLSKNDPRLIGPVTN-SNANYMWMQHFLYHL----NDTGTAGFVM 323

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-- 418
           ++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS  +  +   
Sbjct: 324 ANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKNGY 381

Query: 419 ---RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
              + ++  I+A  + T +     K++ ++ ++  +I  +Y + +        D    G+
Sbjct: 382 RARKNEILFIDARKMGTLVSR---KQKALSKEEIDKIAAVYRAYKYDGAEGYEDIA--GF 436

Query: 476 RRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIYPY 529
            ++  +       + L            E D+ +  K++ L Q       +    Q    
Sbjct: 437 CKVATIEEVRANDYKLTPGIYVGTEVSNEDDVPFEEKMAELTQRLLEQFEESNRLQEKIK 496

Query: 530 GWAESFV 536
              E  +
Sbjct: 497 QDLEGLM 503


>gi|261838807|gb|ACX98573.1| type I R-M system modification subunit [Helicobacter pylori 51]
          Length = 816

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 118/596 (19%), Positives = 219/596 (36%), Gaps = 91/596 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +           + +   + 
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD---------KARNNTYS 51

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
              +            FY   E  L+  G     + L   IA  ++    K + +  DF+
Sbjct: 52  EIEVP--------KGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGVHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 206 KNGLSIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 318

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 319 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIGLAPNLFYGTSIPACV 371

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 372 IVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 426

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +                     +    ++  + ++   +  P  Q    D+   +     
Sbjct: 427 M---------------------VSLEEISANDYNLNIARYIPTKQESQKDLFALINSHKA 465

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            Y         +      K LK    K        A   +      +   + E+  
Sbjct: 466 SYLPKNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSLEYQA 521


>gi|257076849|ref|ZP_05571210.1| type I restriction-modification system methylation subunit
           [Ferroplasma acidarmanus fer1]
          Length = 507

 Score =  271 bits (693), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 182/478 (38%), Gaps = 49/478 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +   A+ +        +   IL    ++RL    +        + +   G +
Sbjct: 10  TKNDLVKLVDNAADLIRTSVD---YK-YILVLLFIKRLSDRWKEEIEDAMSEIMEETGID 65

Query: 67  IDLESFVKVAG--YSFYNTSEYSLSTL--GSTNTRNNLESYIASF---SDNAKAIFEDFD 119
               +   V+   +SF        + +         N+   I      +     +    D
Sbjct: 66  ESEAAKRAVSNEFHSFMVPENVLWNNIRKDRDKLTENMSRAINEIAKQNKELDGVVNRID 125

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F       E   LL ++   F         +    M + YEH++ RF  E ++   +  T
Sbjct: 126 FIDFTKTRENRILLEQLFALFDKYNFSNKCIEGDAMGDAYEHILMRFAPEKAKE-GEVYT 184

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR+VV L   +L           P    ++YDP CG+GG L +A  HV       K   +
Sbjct: 185 PREVVRLMVDIL----------DPQPGMSVYDPACGSGGMLIEAYEHVKSRMGVDKANRV 234

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYC 295
              +G+E  P T+A+     ++  +          +++ G +L    F      + F + 
Sbjct: 235 G-LYGEERSPTTYALAKMNTILHDI-------SESHLEVGDSLLYPKFKTASGLRHFDFV 286

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPP+ +K   +    + E K+    R+  G      G   ++ H+    +       +
Sbjct: 287 LANPPWSQKGYGEDTLKQAEFKD----RYAYGFVPQRYGDWAWIEHMLYTSK------SK 336

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+++    LF       E  IR+ +++  L++++  LP  +F+ T  A  + I +  K 
Sbjct: 337 VAVIMDQGALFRSN---SEKIIRQKIVDEKLLDSVTLLPEKIFYNTGAAGAILIFNKEKQ 393

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           EE R KV  I+A+  +    +  +K  II +D   +I+  Y   E+   FS+++    
Sbjct: 394 EEYRDKVLFIDASREYGKHPDM-RKLNIITNDNIDRIVSAYKKFESIDGFSKVVSVDE 450


>gi|24215896|ref|NP_713377.1| type I restriction enzyme [Leptospira interrogans serovar Lai str.
           56601]
 gi|24197104|gb|AAN50395.1| type I restriction enzyme [Leptospira interrogans serovar Lai str.
           56601]
          Length = 513

 Score =  271 bits (692), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 109/490 (22%), Positives = 183/490 (37%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54
           MT      A+L   IW+ A D+ G     DF + +L     R +                
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ 59

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST----------NTRNNLESYI 104
             +         I  ++  K  GY  Y +  ++   + +               ++ES  
Sbjct: 60  YSKLNDKKITKEIKDDAI-KTRGYFIYPSQLFANIVIKADKNERLNTDLAGIFKDIESSA 118

Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
             F  +   I   F DF +T  RL     +K   L  + K  + ++          +  +
Sbjct: 119 NGF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLTAVLKRVAELDFGDFDSSHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +             I  +YDP CG+G
Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAI--------HKQTRINKIYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D              GQE+   T+ +    M +  +  D       +I+
Sbjct: 230 SLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL       ++ F   +SNPP+   W+   D            RF P   L   S  
Sbjct: 279 LGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      +   A   E +IR++L+ N+ +E +++L 
Sbjct: 334 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRSGA---EQKIRQYLVGNNFVETVISLA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ +D   +I+ 
Sbjct: 387 PNLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETN----NNILTEDHIERIMQ 439

Query: 455 IYVSRENGKF 464
            + S+ + + 
Sbjct: 440 TFDSKVDMEH 449


>gi|292492040|ref|YP_003527479.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
 gi|291580635|gb|ADE15092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosococcus halophilus Nc4]
          Length = 720

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 128/655 (19%), Positives = 232/655 (35%), Gaps = 96/655 (14%)

Query: 6   GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                L + +W  A++L    D K +++   +L    L+  +       +A+ ++Y    
Sbjct: 4   EQLKQLEDDLWSAADNLRANSDLKASEYSTPVLGLIFLKFADINYRRHEAAILKEYQKLK 63

Query: 64  G-SNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNAKAIF 115
           G       + + VA   FY       S L     S +    +E     I  +    +   
Sbjct: 64  GGRREKSLNEIAVARCGFYLPDHARYSHLLNLPESQDIAKAIEKAMEAIEEYKPELQGSL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               +       E   L + + + F  I   PD     V   IYE+ + +F     +G  
Sbjct: 124 PKDGYYRLTRTGETEQLPFDLLRQFDNI---PDDASGDVFGQIYEYFLGKFALAEGQGGG 180

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR VV L   ++                T++DP CG+GG    +   +       +
Sbjct: 181 EFFTPRSVVRLMVEII-----------EPHGGTVFDPACGSGGMFVQSAQFIERHREEFE 229

Query: 236 IPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-R 291
                      GQE   ET  +    + +  L           I QG +   D F    +
Sbjct: 230 AQGEDTSVFVSGQEKSSETVKLARMNLAVNGLRG--------QILQGISYYDDHFGSFGK 281

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKIS--------------DGSM 336
           F Y L+NPPF                  +  RF   G+P+                + + 
Sbjct: 282 FDYVLANPPFNVDEVSLSGV-------EKDPRFNTYGIPRKKTKAKKSEQGKETVPNANY 334

Query: 337 LFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           L++   A  L  P +   GGRAA+V+++S      A   E++IRR L+EN+LI  ++ LP
Sbjct: 335 LWINLFATSLREPDDKHPGGRAALVMANSA---SDARHSEADIRRTLIENNLIYGMLTLP 391

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ--I 452
           +++F+   +   LW     KT+E   ++  I+A +++T I       R  +++Q +   I
Sbjct: 392 SNMFYTVTLPATLWFFDKGKTDE---RILFIDARNIFTPIDRA---HREFSEEQIQNIAI 445

Query: 453 LDIYVSRENGKFSRMLDYRT-------FGYRRIKVLRPLRMSFILDKTGLARLEADI--T 503
           +         +F  ++D             RR       ++  +LD     +  A +  T
Sbjct: 446 ISRLHKGRRDEFIALIDRYFEQGMARLVENRRQVEPVAEQLLAVLDDEAGKKAVASLVDT 505

Query: 504 WRKLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS--------K 554
           W+ L+PL +++     + P    +     A     E I         ++AS         
Sbjct: 506 WKGLAPLQKAWARHRAVHPHPGPLPAGEGASEPKAEIIDQVNEAQQTLRASFDPFFTALH 565

Query: 555 SFIVAFINAFGRKDPRADPVTDVNGEWI-PDTNLTEYENVPYLESIQDYFVREVS 608
             +     A  R +      +   G+    D             ++++   +EV 
Sbjct: 566 DSLKQIDKAVRRHEKTLAEASKQAGKRQSADRATR-----QLKATLEE-LHKEVK 614


>gi|84386436|ref|ZP_00989464.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus
           12B01]
 gi|84378860|gb|EAP95715.1| Type I site-specific deoxyribonuclease HsdM [Vibrio splendidus
           12B01]
          Length = 521

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 116/491 (23%), Positives = 194/491 (39%), Gaps = 66/491 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS--AVREK 58
           MT  +     L N IWK A ++ G     DF + +L     R +                
Sbjct: 1   MT-SSQQRKDLHNQIWKIANEVRGSVDGWDFKQYVLGALFYRFISENFTNYIEGGDSSIN 59

Query: 59  YLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FS------ 108
           Y  F      +E     A      F   SE   + +   +  +NL + +A  FS      
Sbjct: 60  YAGFDDEAPQIELIKDDAIKTKGYFIYPSELFCNVVKKASKNDNLNTDLAKVFSAIESSA 119

Query: 109 ------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-S 156
                 ++ K +F   DF +T  RL     EK   L+ + K    ++L         +  
Sbjct: 120 NGYASEEDIKGLFA--DFDTTSNRLGNTVIEKNTRLFAVLKGVEDLKLGDFQDNQIDLFG 177

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI ++ +   +   +F TP+ V +L   L +   D + K        +YDP  G+
Sbjct: 178 DAYEFLISKYAANAGKSGGEFFTPQTVSNLIAKLAMHKQDKVNK--------IYDPAAGS 229

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A  H  +              GQE+   T+ +    M +  +  D       +I
Sbjct: 230 GSLLLQAKKHFDNHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DI 278

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G+TL+   F  ++ F   +SNPP+  KW    D            RF P   L   S 
Sbjct: 279 ALGNTLTNPHFGDEKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGILAPKSK 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  N L       GRAAIV      +   A   E +IR++L++N+ +E +++L
Sbjct: 334 ADFAFVLHALNYLSPK----GRAAIVCFPGIFYRSGA---EKKIRKYLVDNNYVETVISL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +LF+ T+IA  + +LS  K E     VQ I+A+       N+     ++  +   +I+
Sbjct: 387 APNLFYGTSIAVNILVLSKSKKENT---VQFIDASG--EGFFNKVGNNNVLTSEHIDKIM 441

Query: 454 DIYVSRENGKF 464
           + + S++N + 
Sbjct: 442 ETFDSKQNIEH 452


>gi|304438089|ref|ZP_07398032.1| type I restriction-modification system DNA-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368862|gb|EFM22544.1| type I restriction-modification system DNA-methyltransferase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 525

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 182/495 (36%), Gaps = 71/495 (14%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57
           M        A L   IW+ A DL G     DF + +L     R +   L           
Sbjct: 1   MDNKKEVERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREA 60

Query: 58  KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
               F  + +  +  +            F   SE   + L    T  +L   +       
Sbjct: 61  GDTDFDYAALPDDEAMAEKDNIVQILGFFIPPSELFQNVLARAETNESLNETLEQVFRHI 120

Query: 108 ---------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPD 152
                     D+   +F++FD +S  ++L     E+   L K+      + L H      
Sbjct: 121 ESSATGTPSQDDLTGLFDEFDVNS--SKLGATVKERNAKLTKLLSGVGAMRLGHYQNNTI 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+R + S   +   ++ TP++V  L T L +     + K        +YDP
Sbjct: 179 DAFGDAYEYLMRMYASNAGKSGGEYYTPQEVSELLTRLTVIGKTQVNK--------VYDP 230

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +       +       +GQ+     + +C   M +  +  D     
Sbjct: 231 ACGSGSLLLKFAKVI------GRENVRNGFYGQDENITAYNLCRINMFLHDINFD----- 279

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL        + F   +SNPP+ KKW    + +          R+ P   L 
Sbjct: 280 DFDIAHGDTLINPHHWDDEPFEAIVSNPPYSKKWAGKDNPL-----LINDPRYAPAGVLA 334

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
            +S     F+MH    L       G AAIV     ++   A   E +IR++L++++ ++A
Sbjct: 335 PVSKSDFAFIMHALAWL----ANNGTAAIVCFPGIMYRSGA---ERKIRQYLVDSNYVDA 387

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LFF T IAT + +L   K +        I+A+     + N       ++ +  
Sbjct: 388 VIQLPDNLFFGTTIATCIMVLKKSKPDTTT---VFIDASKECVKVTNS----NKLSQENI 440

Query: 450 RQILDIYVSRENGKF 464
             IL +Y  R + + 
Sbjct: 441 ENILKLYTDRVDVEH 455


>gi|325953724|ref|YP_004237384.1| type I restriction-modification system, M subunit [Weeksella virosa
           DSM 16922]
 gi|323436342|gb|ADX66806.1| type I restriction-modification system, M subunit [Weeksella virosa
           DSM 16922]
          Length = 515

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 112/484 (23%), Positives = 190/484 (39%), Gaps = 66/484 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
                L   IW+ A ++ G     DF + +L     R +            E   Y A  
Sbjct: 5   AQRQELQAKIWRIANEVRGSVDGRDFKQFVLGTLFYRFISENFTNYIEGGDESINYAALQ 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
              I  E     VK  GY  Y  S+  ++   + +T  NL + + +              
Sbjct: 65  DDVITPEIKEDAVKTKGYFIY-PSQLFINIAKNAHTNPNLNTDLKAIFDAIESSANGYPS 123

Query: 108 SDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F DFD       +T+    K   L K+ K    ++    +     +  + YE 
Sbjct: 124 EPDIKGLFADFDTTSTRLGNTVE--AKNNTLAKVLKGIEILDFGNFEDNQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   ++ TP+ V  L   L +    ++ K        +YDP CG+G  L 
Sbjct: 182 LIGNYAANAGKSGGEYFTPQTVSKLIAQLAMHKQTSVNK--------IYDPACGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A  H  +             +GQE+   T+ +    M +  +  D       NI  G+T
Sbjct: 234 QAKKHFDNHIIDEG------FYGQEVNHTTYNLARMNMFLHNINYDKF-----NITLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L +  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LLQPEFGDEKPFDAIVSNPPYALKWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL  +LF
Sbjct: 338 ILHALHYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVIALAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+IA  + +LS  KT+    K Q I+A+      +       ++ D    +I+  + +
Sbjct: 391 YGTSIAVNILVLSKHKTD---TKTQFIDASGE-EFYKKVTN-NNVLEDQHIERIMQHFDT 445

Query: 459 RENG 462
           +E+ 
Sbjct: 446 KEDT 449


>gi|88194192|ref|YP_498984.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|87201750|gb|ABD29560.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
          Length = 490

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 113/532 (21%), Positives = 198/532 (37%), Gaps = 69/532 (12%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYLAFGGSNIDLESFVKVAGYSF 80
              ++F   IL     R L    E   +            A+       +   ++     
Sbjct: 1   MDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQEAWADEEYREDLKAELIDQVG 60

Query: 81  YNTSE---------------YSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST- 123
           Y                   + +  L +T  R    S +   S+N    +F D D SST 
Sbjct: 61  YFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSSTR 119

Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                 E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+
Sbjct: 120 LGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQ 179

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   ++ D  D         +R +YDPTCG+G  L              K   +  
Sbjct: 180 QVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYR 221

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQE    T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+
Sbjct: 222 YFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPY 276

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             KW  D      E  +G        L   S     F+ H+ + L+      G  A+VL 
Sbjct: 277 SAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLP 327

Query: 362 SSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
              LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++  
Sbjct: 328 HGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDD 382

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIK 479
            V  I+A++ +      GK +  ++D Q  +I+D Y  +E   K+S     +        
Sbjct: 383 NVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYN 438

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           +  P R     ++     L+      K      +     +   ++++     
Sbjct: 439 LNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 489


>gi|188528306|ref|YP_001910993.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
 gi|188144546|gb|ACD48963.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           Shi470]
          Length = 820

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 117/559 (20%), Positives = 218/559 (38%), Gaps = 75/559 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
            +  + +S ++V    FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 48  DAKNNTDSEIEVPQGCFY---EDILALEGDKEIGDKLNKIIAEIAEQNDLKGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 105 DN-TKLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 163

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L         +    +++YDPTCG+G  L  A +           
Sbjct: 164 FYTPSEVSL------LLSLLLGIDANTKQDKSIYDPTCGSGSLLLKASSLA--------G 209

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++             +I +G  STLS   F      +
Sbjct: 210 KNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPFFIKNGMLQ 262

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D   ++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 263 TFDYVVANPPFSLKNWTDGLNIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 322

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+  + L  +LF+ T+I   +
Sbjct: 323 DT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGAIGLAPNLFYGTSIPACV 375

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L       R+G V LI+A+  +   + +G K R + +   ++++D + + +   +   
Sbjct: 376 IVLDKENARARKG-VFLIDASKDF---KKDGNKNR-LREQDVQKMIDAFNALKEIPYYSK 430

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +         + +       + L+       + +      + ++      + K  ++   
Sbjct: 431 M---------VSLEEISTNDYNLNIARYIAAKQESEKDLFALINSHKASYLPKNEIEAYA 481

Query: 528 PYGWAESFVKESIKSNEAK 546
           PY      +K ++     K
Sbjct: 482 PYFQVFKELKNTLFKKSDK 500


>gi|322689708|ref|YP_004209442.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F]
 gi|320461044|dbj|BAJ71664.1| DNA methylase [Bifidobacterium longum subsp. infantis 157F]
          Length = 855

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/500 (21%), Positives = 186/500 (37%), Gaps = 76/500 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64
           +   LA  IW++A  +    +  ++   IL F   + L    E   + +R +        
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEVARLRAEDWGDEDLK 58

Query: 65  --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112
                D E+   V     Y  S      +     S  T  ++   +++F  N        
Sbjct: 59  GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118

Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
              IF+     + +++L      ++     +      I           +  IYE+LI  
Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP +V  L + ++        + +      +YDPT G+G  L     
Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            VA    +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D
Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281

Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                        +        +SNPP+ + WE  +         GE  RF  G+   S 
Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ L
Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T I T + +L   + +     V +++A+  +        K   +     ++I+
Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439

Query: 454 DIY-VSRENGKFSRMLDYRT 472
           D    +R+  KFSR++    
Sbjct: 440 DTVSENRDVDKFSRLVSLDE 459


>gi|190606537|ref|YP_001974822.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus
           faecium]
 gi|190350307|emb|CAP62659.1| putative type I site-specific deoxyribonuclease HsdM [Enterococcus
           faecium]
          Length = 515

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 116/492 (23%), Positives = 194/492 (39%), Gaps = 69/492 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54
           M+  T     L + IWK A D+ G     DF + +L     R +                
Sbjct: 1   MSSATQ-RTKLQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSSYIEGGDDSVN 59

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSD---- 109
             E       + I  ++  K  GY  Y  S+       + NT  +L + +A+ FS     
Sbjct: 60  YAELNDDVITNEIKEDAI-KTKGYFIY-PSQMFSRIAKTANTNESLNTDLAAIFSAIESS 117

Query: 110 --------NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVM 155
                   + K +F   DF +T  RL     +K   L  + K   G++    +     + 
Sbjct: 118 ANGYPSELDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVEGLDFGEFEENQIDLF 175

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G
Sbjct: 176 GDAYEFLISNYAANAGKSGGEFFTPQSVSSLIAQLAIHKQTTINK--------IYDPAAG 227

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A                   +GQE+   T+ +    M +  +  D       +
Sbjct: 228 SGSLLLQAKKQFDAHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDKF-----H 276

Query: 276 IQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G+TL    +   K F   +SNPP+  KW   +D            RF P   L   S
Sbjct: 277 IALGNTLLDPHYGEDKPFDAIVSNPPYSVKWIGSEDPT-----LINDERFAPAGVLAPKS 331

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E I++
Sbjct: 332 KADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETIIS 384

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LF+ T+IA  + +LS  K++    K Q I+A+ +    + E     I+ D+   +I
Sbjct: 385 LAPNLFYGTSIAVNILVLSKHKSD---NKTQFIDASGI-EFYKKETN-NNILTDEHIAKI 439

Query: 453 LDIYVSRENGKF 464
           + ++ S+E+   
Sbjct: 440 MSMFDSKEDIDH 451


>gi|331006357|ref|ZP_08329668.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
 gi|330419839|gb|EGG94194.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
          Length = 517

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 121/496 (24%), Positives = 195/496 (39%), Gaps = 74/496 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT  T   A+L   IW  A D+ G     DF + +L     R +         A  +   
Sbjct: 1   MT-STQQRAALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSIH 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------- 107
           Y A     I  +     +K  GY  Y  S+   +   + N   +L + +A+         
Sbjct: 60  YAALSDEVITPDIKDDAIKTKGYFIY-PSQLFATVAKNANNNESLNTDLAAIFAAIEASA 118

Query: 108 -----SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL------HPDTVP 151
                  + K +F   DF +T  RL     +K   L  + K  +G++        PD   
Sbjct: 119 SGYPSEPDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGHDFYEKPDAAQ 176

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YD
Sbjct: 177 IDLFGDAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYD 228

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  G+G  L  A  H  +              GQE+   T+ +    M +  +  D    
Sbjct: 229 PAAGSGSLLLQAKKHFDNHIIEDG------FWGQEINHTTYNLARMNMFLHNINYDKF-- 280

Query: 272 LSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
              N+Q G+TL+   F   + F   +SNPP+  KW    D            RF P   L
Sbjct: 281 ---NMQLGNTLTDPHFLDDKPFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVL 332

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E
Sbjct: 333 APKSKADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNYVE 385

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            +++L  +LFF T IA  + +LS  KT+      Q I+A+ L+    N       +  D 
Sbjct: 386 TVISLAPNLFFGTTIAVTILVLSKHKTDTTT---QFIDASGLFKKDTNT----NTMTGDH 438

Query: 449 RRQILDIYVSRENGKF 464
             QI+ ++ S+ N + 
Sbjct: 439 IEQIMQVFDSKANVEH 454


>gi|227546693|ref|ZP_03976742.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212839|gb|EEI80718.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum subsp. infantis ATCC 55813]
          Length = 855

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 108/500 (21%), Positives = 186/500 (37%), Gaps = 76/500 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64
           +   LA  IW++A  +    +  ++   IL F   + L    E   + +R +        
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEVARLRAEDWGDEDLK 58

Query: 65  --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112
                D E+   V     Y  S      +     S  T  ++   +++F  N        
Sbjct: 59  GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118

Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
              IF+     + +++L      ++     +      I           +  IYE+LI  
Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP +V  L + ++        + +      +YDPT G+G  L     
Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            VA    +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D
Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281

Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                        +        +SNPP+ + WE  +         GE  RF  G+   S 
Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ L
Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T I T + +L   + +     V +++A+  +        K   +     ++I+
Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439

Query: 454 DIY-VSRENGKFSRMLDYRT 472
           D    +R+  KFSR++    
Sbjct: 440 DTVSENRDVDKFSRLVSLDE 459


>gi|150391750|ref|YP_001321799.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
 gi|149951612|gb|ABR50140.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
          Length = 897

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 90/484 (18%), Positives = 181/484 (37%), Gaps = 63/484 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W+    L G  + + +   +L     + +    +  R           
Sbjct: 1   MAVKKSELYSLLWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGQR-----FAEFTV 55

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
                 E  +   G S               +    ++  I  F +    +    D  F+
Sbjct: 56  NEGASFEDLIAAKGKS---------------DVGERVDKIIQKFLEENRLQGSLPDVSFN 100

Query: 122 STIARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174
           +    L     L      +   F    +   +     D ++ + YE+ + +F  E  +  
Sbjct: 101 NP-DELGSGKELVDKVSGLIAIFQNPAIDFKSNRASGDDIIGDAYEYFMMKFAQESGKSK 159

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V  +   L+   D    K+  G   TL+DP  G+G  L  A +   +  +  
Sbjct: 160 GQFYTPSEVSRIIARLIGIGD---IKQETGKKWTLHDPAAGSGSLLIRAAD---EAPTDE 213

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
               I+  +GQE  P+T  +     ++           +  I+  +TL+   +       
Sbjct: 214 DGNSIVSIYGQEKYPDTAGLAKMNFILHN-------KGTGEIKSANTLANPAYKDDFGGL 266

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F + + NPPF  K   D     ++      G    G+P   +G   +     + L+  
Sbjct: 267 RKFDFIVMNPPFSDKDWTDGIKPSEDKFKRFDG---YGIPPEKNGDYAW---FLHVLKAL 320

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            +  G+A I+L    L    A   E  IR+ +L+   I+ IV LP +LF+ T I   + I
Sbjct: 321 DSQRGKAGIILPHGVLSRPNA---EETIRKAVLDKRYIKGIVGLPANLFYGTGIPACIII 377

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468
           +     ++R G + +INA+  +   + +G K R + +    +I+  ++++E  + +S+ +
Sbjct: 378 IDKEDADKREG-IFMINASRGF---KKDGNKNR-LREQDIEKIVQTFINKEEIEGYSKFV 432

Query: 469 DYRT 472
            Y+ 
Sbjct: 433 TYKE 436


>gi|302190880|ref|ZP_07267134.1| type I restriction-modification system DNA methylase [Lactobacillus
           iners AB-1]
          Length = 432

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 177/464 (38%), Gaps = 55/464 (11%)

Query: 77  GYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
              F+   E    T+             +N    I + +   K +      S  + +   
Sbjct: 2   ENVFFVPKEARWDTIAKAAHTPEIGSIIDNAMRAIEAENKTLKDVLPKNYASPDLDK--- 58

Query: 130 AGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
             +L  +   F+  I++  +   + ++   YE+ I +F  +  +   +F TP  +V    
Sbjct: 59  -QVLGDVVDIFTNRIDMSDNKQSEDLLGRTYEYCIAKFAEKEGKSGGEFYTPSSIVKTLV 117

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           ++L           P     +YD  CG+GG    +   +     +      +  +GQE  
Sbjct: 118 SIL----------KPFDNCRVYDCCCGSGGMFVQSAKFIRAHSGNRG---SISIYGQEAN 164

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
            +T  +    M IR +++D     +       T + DL    +  + L+NPPF       
Sbjct: 165 ADTWKMAKMNMAIRGIDADLGPYQA------DTFTNDLHPTLKADFILANPPFNYSPWNQ 218

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +       K  +  R+  G P   + +  ++ H+ + L       G+  +VL++  L + 
Sbjct: 219 E-------KLLDDVRWKYGTPPAGNANYAWIQHMIHHLAP----NGKIGLVLANGALSSQ 267

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
               GE EIR+ ++E+DLIE I++LP  LF+  +I   LW +S  K  +++GK   I+A 
Sbjct: 268 NC--GEGEIRQKIIEDDLIEGIISLPPKLFYSVSIPVTLWFISKNK--KQKGKTVFIDAR 323

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMS 487
            +   +     K R   ++  +++ D + + +NG           G+  +  +    +  
Sbjct: 324 KMGHMVDR---KHRDFTEEDIQKLADTFEAFQNG-----TLEDEKGFCSVATIQDIAKQD 375

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           ++L       +E      +      +     L  M ++ +    
Sbjct: 376 YVLTPGRYVGIEEQEDDGEPFDEKMTKLTSELSDMFERSHELED 419


>gi|45656820|ref|YP_000906.1| type I restriction enzyme [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600056|gb|AAS69543.1| type I restriction enzyme [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 513

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 110/490 (22%), Positives = 184/490 (37%), Gaps = 67/490 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS------A 54
           MT      A+L   IW+ A D+ G     DF + +L     R +                
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSIQ 59

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFY-------NTSEYSLSTLGSTNTR---NNLESYI 104
             +         I  ++  K  GY  Y         ++   +   +T+      ++ES  
Sbjct: 60  YSKLNDKKITKEIKDDAI-KTRGYFIYPSQLFANIVTKADKNERLNTDLAGIFKDIESSA 118

Query: 105 ASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
             F  +   I   F DF +T  RL     +K   L  + K  + ++          +  +
Sbjct: 119 NGF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V  L   L +             I  +YDP CG+G
Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQHVSKLIARLAI--------HKQTRINKIYDPACGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     D              GQE+   T+ +    M +  +  D       +I+
Sbjct: 230 SLLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIE 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL       ++ F   +SNPP+   W+   D            RF P   L   S  
Sbjct: 279 LGNTLIDPQHNHEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      +   A   E +IR++L+ N+ +E +++L 
Sbjct: 334 DFAFVLHALSYLSSK----GRAAIVCFPGIFYRSGA---EQKIRQYLVGNNFVETVISLA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ +D   +I+ 
Sbjct: 387 PNLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETN----NNILTEDHIERIMQ 439

Query: 455 IYVSRENGKF 464
            + S+ + + 
Sbjct: 440 TFDSKVDTEH 449


>gi|296171676|ref|ZP_06852890.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894037|gb|EFG73800.1| type I modification enzyme [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 457

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 86/456 (18%), Positives = 151/456 (33%), Gaps = 85/456 (18%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L + +WK A  L G      +  V+L    L                      
Sbjct: 1   MRATDKELEDTLWKAANKLRGSLSAGQYKDVVLGLVFL---------------------- 38

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                     + AG       E    +L        +   +           E       
Sbjct: 39  ----------EHAG-------EAEWKSLVGNADSPGIGRLVD-------DAMEVAALPRL 74

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L     + ++        L        +M  +YE+ +  F         +F TP  V
Sbjct: 75  YENL-DPRRVGELVCLLDAARLGERGGARDLMGELYEYFLGNFARAEGRRGGEFFTPPSV 133

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V +   +L                 +YDP CG+GG        VA+          +   
Sbjct: 134 VRVIVEVL-----------EPASGRVYDPCCGSGGMFVQTERFVAEHDGD---SAKISFW 179

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           GQE   +T  +    + +  ++           + G TL  D   G +  Y L+NPPF  
Sbjct: 180 GQESVEQTWRLAKMNLAVHGIDDTGLGA-----RWGDTLLADQHAGIQMDYVLANPPFN- 233

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                   +++  ++    R+  G+P   + +  ++ H+ +KL      GG+A +V+++ 
Sbjct: 234 --------IKEWARDERDPRWRFGVPPAGNANYAWIQHILSKLAP----GGKAGVVMANG 281

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            + +     GE  IR  +++ DL+  +VALP  LF  T I   LW     K     G+V 
Sbjct: 282 SMSSNALREGE--IRARIVDADLVSCMVALPAQLFRSTPIPVCLWFFDTDKGTR-SGQVL 338

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            I+A  L   +       R +  ++  +I D Y + 
Sbjct: 339 FIDARGLGHLVDRAE---RALTPEEIVRIGDTYHAW 371


>gi|261840207|gb|ACX99972.1| type I R-M system M protein [Helicobacter pylori 52]
          Length = 817

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 126/582 (21%), Positives = 228/582 (39%), Gaps = 82/582 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L N +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYNSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------- 43

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
            +  + +S ++V    FY   E  L+  G     + L   IA  ++    K + +  DF+
Sbjct: 44  KARNNTDSEIEVPKGCFY---EDILALEGDKEIGDKLNKIIAEIAERNGLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTGK---- 290
              L  +GQE +  T A+C   M++             +I +G  STLS  LFT +    
Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSSTLSNPLFTTENGML 258

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKL 346
             F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L
Sbjct: 259 KTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDRFNRFEDGTPPEKNGDFAFLLHIIKSL 318

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   
Sbjct: 319 KNT----GKGAVILPHGVLFRGNA---EGAIRKNLLTKGYIKGVIGLAPNLFYGTSIPAC 371

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + +L       R+G V +I+A+  +   + +G K R + +   ++++D + + +   +  
Sbjct: 372 VIVLDKENARARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYS 426

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGL--ARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +         + +       + L+      A+ E++     L   H++ +L   +    
Sbjct: 427 KM---------VSLEEISANDYNLNIARYIAAKPESEKDLFALINSHKASYLPKNEIKAY 477

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
             Y   + E       KS++     +K     I   I     
Sbjct: 478 APYFRVFKELKNTLFKKSDKEGYYALKTECENIKDLITQSSE 519


>gi|238926418|ref|ZP_04658178.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Selenomonas flueggei ATCC 43531]
 gi|238885822|gb|EEQ49460.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Selenomonas flueggei ATCC 43531]
          Length = 525

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 182/495 (36%), Gaps = 71/495 (14%)

Query: 1   MTEFTG-SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVRE 57
           M        A L   IW+ A DL G     DF + +L     R +   L           
Sbjct: 1   MDNKKEVERAELHRAIWQIANDLRGSVDGWDFKQYVLGTLFYRYISEKLTDYLNAEEREA 60

Query: 58  KYLAFGGSNIDLESFVKVAGYS------FYNTSEYSLSTLGSTNTRNNLESYIASF---- 107
              AF  + +  +  +            F   SE   + L    T  +L   +       
Sbjct: 61  GDTAFDYAALPDDEAMAEKDNIVQILGFFIPPSELFQNVLARAETNESLNETLEQVFRHI 120

Query: 108 ---------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPD 152
                     D+   +F++FD +S  ++L     E+   L K+      + L H      
Sbjct: 121 ESSATGTPSQDDLTGLFDEFDVNS--SKLGATVKERNAKLTKLLSGVGAMRLGHYQDNTI 178

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+R + S   +   ++ TP++V  L T L +     + K        +YDP
Sbjct: 179 DAFGDAYEYLMRMYASNAGKSGGEYYTPQEVSELLTRLTVIGKTQVNK--------VYDP 230

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +       +       +GQ+     + +C   M +  +  D     
Sbjct: 231 ACGSGSLLLKFAKVI------GRENVRNGFYGQDENITAYNLCRINMFLHDINFD----- 279

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL        + F   +SNPP+ KKW    + +          R+ P   L 
Sbjct: 280 DFDIAHGDTLINPHHWDDEPFEAIVSNPPYSKKWAGKDNPL-----LINDPRYAPAGVLA 334

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S     F++H    L       G AAIV     ++   A   E +IR++L++++ ++A
Sbjct: 335 PTSKSDFAFILHSLAWL----AASGTAAIVCFPGIMYRSGA---EKKIRQYLVDSNYVDA 387

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           ++ LP +LFF T IAT + +L   K +        I+A+     + N       ++ +  
Sbjct: 388 VIQLPDNLFFGTTIATCIMVLKKSKPDTTT---VFIDASKECVKVTNS----NKLSQENI 440

Query: 450 RQILDIYVSRENGKF 464
             IL +Y  R + + 
Sbjct: 441 ENILKLYTDRVDVEH 455


>gi|260061349|ref|YP_003194429.1| type I restriction-modification system DNA methylase [Robiginitalea
           biformata HTCC2501]
 gi|88785481|gb|EAR16650.1| type I restriction-modification system DNA methylase [Robiginitalea
           biformata HTCC2501]
          Length = 531

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 96/570 (16%), Positives = 204/570 (35%), Gaps = 77/570 (13%)

Query: 4   FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T + A +     +W  A +L G      +   +LP   L+ +    E  R  + + +  
Sbjct: 1   MTQTKADINFEKELWNAANELRGAVAENQYKDYVLPLIFLKHMSERYEMRRDELMDAFED 60

Query: 62  -----FGGSNID-----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNN-----------L 100
                +G S  D      +    ++  ++    + +   L     R+N           L
Sbjct: 61  EASNYYGLSEDDRNYVLEDPDEYLSKNTYIIPKKATWEFLQDNAERDNIKVLVDEAFDTL 120

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIY 159
           +  + +F    K I       S +     +  +  +    S  +L         ++  +Y
Sbjct: 121 DETLGAFRPELKGILPRIFVKSQLT----SRQVGGLINLLSHPKLSVKENPESDILGRVY 176

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+ I +F      GA  F TP  +V L   ++                 ++D  CG+GG 
Sbjct: 177 EYYIGKFAIAEGSGAGQFFTPGSIVRLMVEMI-----------EPYKGKIFDAACGSGGM 225

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              ++  +   G        +  +GQE    T  +C   + +R L  D        ++ G
Sbjct: 226 FVQSLKFLEAHGGD---KRNISIYGQERYSGTLRLCKMNLALRDLSFD--------VRLG 274

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLF 338
            +L +D F      Y L NPPF       +D  +K+ +  G    F        + + ++
Sbjct: 275 DSLLQDKFPDLEADYILVNPPFNVSQWHPEDLPDKDPRLFGPKEEF----TTDGNANYMW 330

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    + L    +  G AA+V+++  +  G    GE  +R+ +++  +I+AIV LP  LF
Sbjct: 331 MQTFWSHL----SNTGTAAVVMANGAMTTGNK--GEKNVRQHMVDEGMIDAIVRLPDKLF 384

Query: 399 FRTNIATYLWILSNRKT------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
             T I   ++ILS  +        ER+ ++  I+ + +         + R+ ++    + 
Sbjct: 385 LTTGIPACIFILSKNRDGKDGVHRERKEEILFIDMSKMGRMESR---RLRVFDEADLIKA 441

Query: 453 LDIYVSREN--GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD----ITWRK 506
           ++ Y +  N   K +   + +        +    +  + L       +E +    I + +
Sbjct: 442 VEAYHAWRNLPNKDNAPYENQDGFCYAATLEEVQKQDYKLTPGIYVGIEEEEDDGIPFEE 501

Query: 507 LSPLHQSFWLDILKPMMQ-QIYPYGWAESF 535
              + ++   +  +     +       + F
Sbjct: 502 KLAILKAQLKEQFREGEDLKRKILDNFDQF 531


>gi|261837922|gb|ACX97688.1| type I restriction enzyme modification protein [Helicobacter pylori
           51]
          Length = 525

 Score =  269 bits (689), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 124/574 (21%), Positives = 206/574 (35%), Gaps = 86/574 (14%)

Query: 1   MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT- 51
           M      A          L N I K A +L G     DF + +L     R +   +    
Sbjct: 1   MENKNTQAPKSSSLERNELHNTILKMANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 52  -RSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
            +                E+        I  + F       F N  +   +      T  
Sbjct: 61  NKEERERDPNFDYALLSDEEAEGAKEGLIVEKGFFIPPSALFCNVLKNVQNNEDLNVTLQ 120

Query: 99  NLESYIASFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDT 149
           N+ + I   S      +N K +F D D +S     +   +   L KI +   G++L    
Sbjct: 121 NIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVEKLTKILEAIGGMQLGDYQ 180

Query: 150 VPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V  + YE+L+  + S   +   +F TP++V  L   + L   +++ K        
Sbjct: 181 KSGIDVFGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L      + D              GQE+   T+ +C   M +  +    
Sbjct: 233 VYDPCCGSGSLLLQFSKVLGDKNVSKG------YFGQEINLTTYNLCRINMFLHDIN--- 283

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL        + F   +SNPP+  KW  DK+ +          RF P 
Sbjct: 284 --YSKFHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDKNPI-----LINDERFSPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   +   + F MH+ + L       G AAIV     L+ G A   E++IR +L++ +
Sbjct: 337 GVLAPKNAADLAFTMHMLSYLSNS----GTAAIVEFPGVLYRGNA---EAKIREYLVKEN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ ++ALP +LFF T+IAT + +L   K +        I+A+  +        K+  + 
Sbjct: 390 FIDCVIALPDNLFFGTSIATCILVLKKNKQDNTT---LFIDASKEFVKE----GKKNKLK 442

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              R +IL  Y  R+  K    L           + +     + L        E      
Sbjct: 443 ARNREKILKTYTERKAIKHFCALAS---------MEKIKENDYNLSVNRYVEQEDTKEII 493

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
            +  L+     +I + + +Q       ES +KE 
Sbjct: 494 DIKALN----SEISQIVEKQSALRNSLESIIKEL 523


>gi|288926748|ref|ZP_06420659.1| type I restriction-modification system, M subunit [Prevotella
           buccae D17]
 gi|288336478|gb|EFC74853.1| type I restriction-modification system, M subunit [Prevotella
           buccae D17]
          Length = 515

 Score =  269 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 108/479 (22%), Positives = 187/479 (39%), Gaps = 62/479 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL- 69
           L   IWK A ++ G     DF + +L     R +         A  E        +  + 
Sbjct: 10  LQTAIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTNFIEAGDESVNYAQSPDEVIT 69

Query: 70  ----ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA----------KAIF 115
               +  +K  GY  Y  S+  ++     N   NL + +A+  D              I 
Sbjct: 70  PEIKDDAIKTKGYFIY-PSQLFVNIAKDANGNPNLNTDLAAIFDAIESSASGYASEHDIK 128

Query: 116 EDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGS 168
             F DF +T  RL     EK   L  + K    ++    +     +  + YE LI  + +
Sbjct: 129 GLFADFDTTSNRLGNTVEEKNKRLAAVIKGVESLDFSNFENNEIDLFGDAYEFLISNYAA 188

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP++V  L   L +   D++ K        +YDP CG+G  L  A     
Sbjct: 189 NAGKSGGEFFTPQNVSSLIARLAMYGQDSVNK--------IYDPACGSGSLLLQAKKQFD 240

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          GQE+   T+ +    M +  +          +I  G+TL    + 
Sbjct: 241 AHLIEEG------FFGQEINHTTYNLARMNMFLHNIN-----YAKFDIALGNTLLNPQYG 289

Query: 289 GKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANK 345
            ++ F   +SNPP+   W    D            RF P   L   S     F++H  + 
Sbjct: 290 DQKPFDAIVSNPPYSVNWVGSDDPT-----LINDDRFAPAGVLAPKSKADFAFVLHALSY 344

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    +  GRAAIV      + G A   E +IR++L++N+ +E +++LP +LF+ T+IA 
Sbjct: 345 L----SARGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLPPNLFYGTSIAV 397

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            + +LS  KT+ +    Q I+A         +     ++      +I++I+ ++E  ++
Sbjct: 398 NILVLSKHKTDTQT---QFIDAGS--EDFFKKETNNNVLLPKHIDRIVEIFGTKEEVQY 451


>gi|23335512|ref|ZP_00120747.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Bifidobacterium longum DJO10A]
 gi|189440821|ref|YP_001955902.1| type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum DJO10A]
 gi|189429256|gb|ACD99404.1| Type I restriction-modification system methyltransferase subunit
           [Bifidobacterium longum DJO10A]
          Length = 855

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/521 (20%), Positives = 189/521 (36%), Gaps = 76/521 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64
           +   LA  IW++A  +    +  ++   IL F   + L    E   + +R +        
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEIARLRAEDWGDEDLK 58

Query: 65  --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112
                D E+   V     Y  S      +     S  T  ++   +++F  N        
Sbjct: 59  GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118

Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
              IF+     + +++L      ++     +      I           +  IYE+LI  
Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP +V  L + ++        + +      +YDPT G+G  L     
Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            VA    +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D
Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281

Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                        +        +SNPP+ + WE  +         GE  RF  G+   S 
Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ L
Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T I T + +L   + +     V +++A+  +        K   +     ++I+
Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439

Query: 454 DIY-VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           D    +R+  KFSR++           +  P  +       
Sbjct: 440 DTVSENRDIDKFSRLVSLDEIRQNDYNLNIPRYVDSSETAE 480


>gi|23466326|ref|NP_696929.1| hypothetical protein BL1782 [Bifidobacterium longum NCC2705]
 gi|23327081|gb|AAN25565.1| HsdM [Bifidobacterium longum NCC2705]
          Length = 855

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/497 (21%), Positives = 183/497 (36%), Gaps = 70/497 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-S 65
           +   LA  IW++A  +    +  ++   IL F   + L         A         G  
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLSETEVAHLRAEDWGDEDLKGLD 61

Query: 66  NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK--------A 113
             D E+   V     Y  S      +     S  T  ++   +++F  N           
Sbjct: 62  ENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRVFAG 121

Query: 114 IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           IF+     + +++L      ++     +      I           +  IYE+LI  F S
Sbjct: 122 IFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISNFAS 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        + +      +YDPT G+G  L      VA
Sbjct: 179 NAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQAVA 232

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D   
Sbjct: 233 RRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSDWPW 284

Query: 287 ----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                     +        +SNPP+ + WE  +         GE  RF  G+   S    
Sbjct: 285 FDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSKADY 336

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ LP +
Sbjct: 337 AFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGLPAN 389

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T I T + +L   + +     V +++A+  +        K   +     ++I+D  
Sbjct: 390 IFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIVDTV 442

Query: 457 -VSRENGKFSRMLDYRT 472
             +R+  KFSR++    
Sbjct: 443 SENRDVDKFSRLVSLDE 459


>gi|317481749|ref|ZP_07940780.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916806|gb|EFV38197.1| N-6 DNA methylase [Bifidobacterium sp. 12_1_47BFAA]
          Length = 855

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 108/500 (21%), Positives = 186/500 (37%), Gaps = 76/500 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG-- 64
           +   LA  IW++A  +    +  ++   IL F   + L    E   + +R +        
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFIFYKFLS---ETEIARLRAEDWGDEDLK 58

Query: 65  --SNIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFSDNAK------ 112
                D E+   V     Y  S      +     S  T  ++   +++F  N        
Sbjct: 59  GLDENDAETVQYVRDLCGYFISYDNLFSTWIASQSDFTIADVRDALSAFERNIDPARKRV 118

Query: 113 --AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
              IF+     + +++L      ++     +      I           +  IYE+LI  
Sbjct: 119 FAGIFDT--LQTGLSKLGTDEKSRSKAARDLIYLIKDI-PMDSRQDYDTLGFIYEYLISN 175

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F S   + A +F TP +V  L + ++        + +      +YDPT G+G  L     
Sbjct: 176 FASNAGKKAGEFYTPSEVSQLMSEIVAWHLAGREEIN------IYDPTSGSGSLLIHIGQ 229

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            VA    +   P  +  + QEL+  T+ +    +++R +  D         + G TL  D
Sbjct: 230 AVARRNGN---PNDIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLKSD 281

Query: 286 L------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                        +        +SNPP+ + WE  +         GE  RF  G+   S 
Sbjct: 282 WPWFDTDETKDETYEPLFVDAVVSNPPYSQNWEPPEP--------GEDIRFEYGIAPKSK 333

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               FL+H    L       G   IVL    LF G     E  IRR L+EN  I+AI+ L
Sbjct: 334 ADYAFLLHDLYHLRDD----GIMTIVLPHGVLFRGGE---EGTIRRNLVENHHIQAIIGL 386

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++FF T I T + +L   + +     V +++A+  +        K   +     ++I+
Sbjct: 387 PANIFFGTGIPTIVMVLRKHRND---DHVLVVDASKYFAKD----GKNNKLRASDIKRIV 439

Query: 454 DIY-VSRENGKFSRMLDYRT 472
           D    +R+  KFSR++    
Sbjct: 440 DAVSENRDVDKFSRLVSIDE 459


>gi|294660605|ref|NP_853464.2| type I restriction-modification system methyltransferase subunit
           [Mycoplasma gallisepticum str. R(low)]
 gi|284812268|gb|AAP57032.2| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. R(low)]
 gi|284930962|gb|ADC30901.1| type I restriction-modification system methyltransferase (M)
           subunit [Mycoplasma gallisepticum str. R(high)]
          Length = 875

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/492 (22%), Positives = 188/492 (38%), Gaps = 76/492 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----------ALEPTRSAV 55
           +   LA  IW  A ++ G+ +  D+   IL F   + L               +  +   
Sbjct: 2   TKQELAREIWAMANEMRGNIEANDYKDYILGFLFYKYLSDKQDEYFASKNVVKDEDKKQY 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST-LGSTNTRNNL------------ES 102
                      I            +Y   E   ST + + N  ++L             S
Sbjct: 62  LVALAEADKKGIASIIHKCKKDLGYYIAYENLFSTWIKNYNPGDDLSDKVSTALNSFERS 121

Query: 103 YIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +  + ++ K IF+  D  + I +L     E++  ++ IC   + I +        ++  
Sbjct: 122 ILEKYEESFKDIFK--DLQAGIQKLGNTAYERSEAIWNICNLINKIPIT-SKQDYDILGF 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+LI  F +   + A +F TP +V  L + +  +    L         ++YDPT G  
Sbjct: 179 VYEYLISMFAANAGKKAGEFYTPHEVSQLMSVIAANHLKGL------KNVSIYDPTSG-- 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +            +  + QE+   T+ +    +L+  + S          +
Sbjct: 231 SLLITLGRELK----KIDKNVKIQYYAQEVIDTTYNITRMNLLMNDVHSVNMFA-----K 281

Query: 278 QGSTLSKD--------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
            G TL +D         +  KR    +SNPP+   W  +              RF  GL 
Sbjct: 282 CGDTLKEDWPFVYEEQKYKSKRTDAVVSNPPYSLAWNTENKEN--------DPRFRYGLA 333

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + FL+H    LE      G   IVL    LF G     E +IR+ L+ +D I+A
Sbjct: 334 PKSKSELAFLLHSLYHLEDH----GILTIVLPHGVLFRGG---SELQIRQNLISHDHIDA 386

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP+++FF T I T + +L   KT++ +  V  I+A+  +T    EG K   +     
Sbjct: 387 IIGLPSNIFFGTGIPTIIMVLKRSKTKKEKNNVLFIDASKYFT---KEGNK-NKLQSSDI 442

Query: 450 RQILDIYVSREN 461
            +I D + +RE+
Sbjct: 443 VRIYDAFSARED 454


>gi|254780040|ref|YP_003058147.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori B38]
 gi|254001953|emb|CAX30210.1| Type I restriction-modification enzyme subunit M [Helicobacter
           pylori B38]
          Length = 816

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 114/508 (22%), Positives = 203/508 (39%), Gaps = 71/508 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N +        G  FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 45  ARNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+  F SE  +    
Sbjct: 101 DN-TKLGEGKAMTDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMCHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++           + +I +G  STLS   F      K
Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGSSTLSNPFFIKNGMLK 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            F Y ++NPPF  K   D  +++ + K   N    RF  G P   +G   FL+H+   L+
Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKQVINDSFNRFEDGTPPEKNGDFAFLLHIIKSLK 318

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF+ T+I   +
Sbjct: 319 NT----GKGAVILPHGVLFRGNA---EGAIRKNLLMKGYIKGVIGLAPNLFYGTSIPACV 371

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            IL       R+G V +I+A+  +   + +G K R + +   ++++D + + +    +S+
Sbjct: 372 IILDKENAHARKG-VFMIDASKDF---KKDGNKNR-LREQDVQKMIDTFNALKEIPYYSK 426

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           M+           +  P  ++   +   
Sbjct: 427 MVSLEEISTNDYNLNIPCYIAAKQESEK 454


>gi|323189849|gb|EFZ75127.1| type I restriction-modification system, M subunit [Escherichia coli
           RN587/1]
          Length = 518

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 117/483 (24%), Positives = 191/483 (39%), Gaps = 68/483 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 5   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  +     +K  GY  Y  S+   +     NT + L + + S              
Sbjct: 65  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLNSIFVAIESSAYGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             + K +F   DF +T  RL     +K   L  + K   G++L   +     +  + YE 
Sbjct: 124 EADIKGLFA--DFDTTSNRLGNTVKDKNARLAAVLKGVEGLKLGDFNEHQIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP+ V  L   L +     + K        +YDP  G+G  L 
Sbjct: 182 LISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTHVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       +I+ G+T
Sbjct: 234 QAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIKLGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L++  F  ++ F   +SNPP+  KW    D            RF P   L   S     F
Sbjct: 283 LTEPHFRDEKPFDAIVSNPPYSVKWIGSDDPT-----LINDERFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  N L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LF
Sbjct: 338 VLHALNYL----SAKGRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T IA  + +L+  K +      Q I+A+ L+    N      ++ D    QI+ ++ S
Sbjct: 391 FGTTIAVNILVLAKNKKDTTT---QFIDASGLFKKETN----NNVLLDAHIEQIMAVFDS 443

Query: 459 REN 461
           +EN
Sbjct: 444 KEN 446


>gi|325680236|ref|ZP_08159798.1| type I restriction-modification system, M subunit [Ruminococcus
           albus 8]
 gi|324108053|gb|EGC02307.1| type I restriction-modification system, M subunit [Ruminococcus
           albus 8]
          Length = 875

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/521 (19%), Positives = 186/521 (35%), Gaps = 93/521 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------------LEPTR 52
           +   LAN IW++A  +    +  ++   IL F   + +                 L   R
Sbjct: 2   NKQQLANKIWESANKMRSKIEANEYKDYILGFIFYKYISDVEITHLLGLGYTTDTLYEVR 61

Query: 53  SAV----------REKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLE 101
             V           +           +++     GY   Y     +   LGS    +N+ 
Sbjct: 62  EPVYPDPDNASAPFDDEETVKDLEEQIDNIKTDIGYFIPYTDLFSTWLELGSDFDVSNVR 121

Query: 102 SYIASFS---------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP 147
             + +F+            K IF+     + +++L     E+   +  +      I    
Sbjct: 122 DALNAFNNRRIGKTHEKVFKGIFDT--LRTGLSKLGGTAGEQTKAIRDLLNLIKDI-PTD 178

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +      +  IYE+LI  F +   + A +F TP +V  L + ++                
Sbjct: 179 NKEDYDALGFIYEYLIENFAANAGKKAGEFYTPHEVSLLMSEIVAYHLRDR------KEI 232

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDPT G+G  L    N       +      +  + QEL+  T+ +    +++R ++++
Sbjct: 233 KIYDPTSGSGSLLI---NIGKSAARYMGTGNNIAYYAQELKQNTYNLTRMNLVMRGIKAN 289

Query: 268 PRRDLSKNIQQGSTLSKDL---------------FTGKRFHYCLSNPPFGKKWEKDKDAV 312
                    + G TL  D                +        +SNPP+ + W+ D    
Sbjct: 290 MIET-----RCGDTLEDDWPYFSEDDKGVKIEGTYDPLYVDAVVSNPPYSQNWDPDGKEN 344

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           +  +        G G+   S     FL+H    ++      G   I+L    LF G    
Sbjct: 345 DDRYS-------GYGVAPKSKADYAFLLHDLYHIKSD----GIMTIILPHGVLFRGGE-- 391

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E EIRR L+E + I+AI+ LP ++FF T I T + +L           V +I+A+  + 
Sbjct: 392 -EGEIRRNLIERNRIDAIIGLPANIFFGTGIPTIIMVLKKN---RINDDVLIIDASKGFE 447

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
                  K   +     R+I D  + R +  K+SR ++   
Sbjct: 448 K----AGKSNKLRASDIRRITDTVIDRRDVPKYSRKVNREE 484


>gi|116329325|ref|YP_799045.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116122069|gb|ABJ80112.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 513

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 182/489 (37%), Gaps = 65/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVRE 57
           MT      A+L   IW+ A D+ G     DF + +L     R +            +  +
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSID 59

Query: 58  KYL--------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTR---NNLESYIA 105
                            I    +       F N  S+   +   +T+       +E+   
Sbjct: 60  YAKLPDKRITREIKDDAIKTRGYFIYPSQLFANVVSKADDNESLNTDLAAIFKAIETSAN 119

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  +   I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 120 GF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   L +             I  +YDP CG+G 
Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAI--------HKQTRINKIYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     D              GQE+   T+ +    M +  +  D       +I+ 
Sbjct: 231 LLLQAKKQFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----DIEL 279

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL       ++ F   +SNPP+   W+   D            RF P   L   S   
Sbjct: 280 GNTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLDPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  
Sbjct: 335 FAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D    QI+  
Sbjct: 388 NLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETNT----NILTDKHIEQIMQT 440

Query: 456 YVSRENGKF 464
           + S+ + + 
Sbjct: 441 FDSKIDKEH 449


>gi|120435035|ref|YP_860721.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117577185|emb|CAL65654.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 547

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 100/506 (19%), Positives = 178/506 (35%), Gaps = 79/506 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-RSAVREKY 59
           M++       L   +W  A  L G      F   +L F  LR L    E + +  + + Y
Sbjct: 1   MSKK--QQDKLGKTLWGIANKLRGAMNADAFRDYMLSFLFLRYLSHNYEESAKKELGKDY 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLST------------LGSTNTRNNLESYI--- 104
                 +   +  V      +Y  +E  +              +      +N+       
Sbjct: 59  PKSSSKDTRPDFVVPPPLEIWYEDNEEDIIEFEKQMQRKVHYVIKPKYLWSNITELARTH 118

Query: 105 -----------------ASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIE 144
                             SF      +F + + +S     +  E+   L  I +  +   
Sbjct: 119 HPDLLKTIEKGFRHIEEESFESTFHGLFSEINLNSEKLGKSEKERNDKLCTIIQKIAE-G 177

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKES 202
           +   +     + + YE+LI +F +   + A +F TP++V  + + ++             
Sbjct: 178 IAEFSTDIDTLGDAYEYLIGKFAAGSGKKAGEFYTPQEVSSVLSQIVTLDAQKPDHTSGP 237

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              +  + D  CG+G  L +    + D G           +GQE    T+ +    ML+ 
Sbjct: 238 KDKLNNVLDFACGSGSLLLNVRRRIKDNGGRIGK-----IYGQENNITTYNLARMNMLLH 292

Query: 263 RLESDPRRDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            ++     D    I  G TL          +      F   ++NPPF  +WE  +     
Sbjct: 293 GMK-----DTEFEIFHGDTLKNQWDILNEMNPSKKVEFDAIVANPPFSLRWEPTET---- 343

Query: 315 EHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
               GE  RF   GL   S     FL+H  + L    +  G  AI+L    LF   A   
Sbjct: 344 ---LGEDFRFKSYGLAPKSAADFAFLLHGFHFL----SQNGTMAIILPHGVLFRSGA--- 393

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E  IR  LL++  ++ ++ LP +LF+ T I   + ++   K E     V  INA+     
Sbjct: 394 EERIRTKLLKDGNVDTVIGLPANLFYSTGIPVCILVIKKCKRES---DVLFINASAEGNY 450

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSR 459
            ++  K +  +     + I++ Y SR
Sbjct: 451 KKS--KNQNELRKSDIKNIIETYKSR 474


>gi|229082883|ref|ZP_04215307.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock4-2]
 gi|228700421|gb|EEL52983.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock4-2]
          Length = 584

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/604 (18%), Positives = 200/604 (33%), Gaps = 137/604 (22%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL---------------- 44
           M +       L   +W  A+ L G     DF   +L F  LR L                
Sbjct: 1   MNDTQQK--QLGATLWGIADKLRGSMNADDFRDYMLSFLFLRYLSDNYEEAAKKELGSDY 58

Query: 45  ----------------ECALEPTRSAVREKYLAFGGSN-------IDLESFVKVAGYS-- 79
                           +  +   +  +   +      +        + E  ++    +  
Sbjct: 59  LQCEEEIKKITIAANQDDVINALKEQITNYFNKQQLDSKEKNSVIEEHEVLLESKKLTPL 118

Query: 80  -----------------------FYNTSEYSLSTLGSTNTRNNLESYI------------ 104
                                  F    +Y  S +       N   Y+            
Sbjct: 119 VVWYINNLDQVATFEKQMRRKVHFVIKPQYLWSNIYELARTQN--KYLLKNLQAGFKFIE 176

Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYK--ICKNFSGIELHPDTVPD--RVMSNIY 159
             SF    + +F + +  S   +L K   L    +C   + I       P+   ++ + Y
Sbjct: 177 NESFDSTFRGLFSEVNLDS--DKLGKNYELRNTTLCSIITAIAEGLSEFPNESDLLGDAY 234

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI +F +   + A +F TP+ +  + + ++              ++ + D  CG+G  
Sbjct: 235 EYLIGQFAAGSGKKAGEFYTPQQISTILSRIVTLDSQDPSTGKKERLKNILDFACGSGSL 294

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L +    +           I   +GQE    T+ +    ML+  L+     D    I  G
Sbjct: 295 LINVRKQL-------GANSIGQIYGQEKNITTYNLARMNMLLHGLK-----DSEFKIFHG 342

Query: 280 STLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPK 330
            +L  D                  ++NPPF  +WE +           E  RF   GL  
Sbjct: 343 DSLLNDWDILTEMNPAKKLECDAVVANPPFSYRWEPNDT-------LAEDFRFKSYGLAP 395

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H  + L       G  AI+L    LF G A   E +IR  LL++  I+ I
Sbjct: 396 KSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EEKIRTKLLKDGNIDTI 448

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T I   + +L   K   +   V  INA++ +      GK++ ++  +   
Sbjct: 449 IGLPANLFFSTGIPVCILVLKKCK---KFDDVLFINASEYYDR----GKRQNVLMPEHID 501

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +I++ Y  R+               RR+ +    +  F L+ +      A+     L+ +
Sbjct: 502 KIVETYKYRKEDDK--------KYSRRVSMEEIEKNDFNLNISRYVSTVAEEETIDLADV 553

Query: 511 HQSF 514
            ++ 
Sbjct: 554 KKNL 557


>gi|42525885|ref|NP_970983.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|41815935|gb|AAS10864.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
          Length = 871

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 101/577 (17%), Positives = 206/577 (35%), Gaps = 103/577 (17%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           + L   +W + + L G    + +   IL    ++ +                     ++ 
Sbjct: 6   SELYGSLWASCDSLRGGMDSSQYKDYILTLLFVKYVSD----------------KYKDMP 49

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIAR 126
                   G SF    +  L+  G       ++  IA  ++  + + I ++  F+     
Sbjct: 50  YGEIEIPEGGSF----DDMLALRGKKGIGEGIDKVIAKLAEANDLRGIIDNAYFNDPTKF 105

Query: 127 ---LEKAGLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               E    L ++   F     +        D ++ + YE+L++ F +E  +    F TP
Sbjct: 106 GSGQEMVDKLTELLSIFCDKMPNFGKNRAEGDDIIGDAYEYLMKNFATESGKSKGQFYTP 165

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V  +   ++        +       TLYDP CG+G  L  A             PP +
Sbjct: 166 AEVSRILAHVIGIEKAKSGES------TLYDPACGSGSLLIRAAET---------APPNV 210

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-------KRFH 293
              GQE +  T  +    +++  +        +  I+ G+T S+  +         ++F 
Sbjct: 211 AVFGQEKDITTAGLAKMNLVLHNV-------ATAEIKSGNTFSEPKYKKHDDETALRQFD 263

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPN 351
           + + NPPF  K           H   + GRF      P   +G   +L+H+   L+    
Sbjct: 264 FAVVNPPFSDKNWT--------HGLQDFGRFDGYEERPPEKNGDFAWLLHVIKSLK---- 311

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AA++L    LF G A   E+ IR+ L++   I+ I+ LP +LF+ T I   + ++ 
Sbjct: 312 RNGKAAVILPHGVLFRGNA---EASIRKALIKKGFIKGIIGLPPNLFYGTGIPACIIVID 368

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
               E+R+G + +I+A+  +         +  + +    +I  ++ +++           
Sbjct: 369 KENAEKRKG-IFIIDASKDFIKD----NDKNRLRERDIYKITKVFNNKK----------- 412

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                      P    F+     +  +E +     +    Q+   + ++ +   +     
Sbjct: 413 ---------ELPYYSRFVF----IDEIEQNDYNLNIPRYIQNGTSEEVQNIEAHLRGGIP 459

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
           +E     S   +    LK    K     F +    KD
Sbjct: 460 SEDIENLSAYWDTFPKLKSSLFKPLRHDFCSLAAEKD 496


>gi|254475169|ref|ZP_05088555.1| type I restriction-modification system, M subunit [Ruegeria sp.
           R11]
 gi|214029412|gb|EEB70247.1| type I restriction-modification system, M subunit [Ruegeria sp.
           R11]
          Length = 515

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/483 (23%), Positives = 189/483 (39%), Gaps = 58/483 (12%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAF 62
              A +L   IW  A  + G     DF + +L     R +            +   Y   
Sbjct: 4   QQQAEALRREIWSIANRVRGAVDGWDFKQFVLGALFYRFISENFTNYIEGGDDSISYAGM 63

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSL----------STLGSTNTRNNLESYIASFS--DN 110
             ++I  E+ V       Y      L          +   +T+      +  AS S   +
Sbjct: 64  ADADIPEEAKVDAVKTKGYFIYPSQLFQNVVKTASKNDSLNTDLAEIFSAIEASASGYPS 123

Query: 111 AKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            + I+  F DF +T  RL     +K   L ++ K  +G+ L  +   + +  + YE LI 
Sbjct: 124 EQDIYGLFADFDTTSNRLGSTVKQKNERLTEVLKGVAGLPLKFEDNKNDLFGDAYEFLIS 183

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP  V  L   L +     + K        +YDP  G+G  L  A 
Sbjct: 184 NYAANAGKSGGEFFTPTHVSKLIAKLAMHNQTRVNK--------IYDPAAGSGSLLLQAK 235

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                              GQE+   T+ +    M +  +  D       NIQ G+TL  
Sbjct: 236 EEFEKHIIEDG------FFGQEINYTTYNLARMNMFLHNINYDK-----FNIQYGNTLED 284

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
             F   + F   +SNPP+  KW+   D            RF P   L   S     F++H
Sbjct: 285 PHFQDDKPFDAIVSNPPYSVKWKGADDPT-----LINDDRFAPAGVLAPKSKADFAFVLH 339

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +  GRAAIV      + G A   E +IR++L++N+ +E +++L  +LFF T
Sbjct: 340 ALHYL----SATGRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVISLAPNLFFGT 392

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            IA  + +L+  K +     V+ I+AT+  T  R  G    I+ D    +I++++ S++ 
Sbjct: 393 TIAVNILVLAKNKKDTA---VRFIDATEEDTFFRK-GVNINIMEDRHIERIVEMFDSKDP 448

Query: 462 GKF 464
             +
Sbjct: 449 VPY 451


>gi|229088748|ref|ZP_04220305.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-44]
 gi|228694573|gb|EEL47992.1| Type I restriction-modification system, M subunit [Bacillus cereus
           Rock3-44]
          Length = 512

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 99/469 (21%), Positives = 192/469 (40%), Gaps = 72/469 (15%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70
              +++   +L     + L   L            E+Y            +    +I  +
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYNTQEKQTELYRESLADEDIKND 60

Query: 71  SFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLE 128
               +     Y+    Y  + L +   +N  +  +   +     +   +D F+     ++
Sbjct: 61  LIETLVDTLGYDIEPEYLFNVLTNQAKQNTFQ--LNDLNKAFIDLSTKYDQFNGLFDDVD 118

Query: 129 -KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            K+  L            ++ K  + +++        V+ + YE LI +F SE  + A +
Sbjct: 119 LKSKKLGSDDQQRNITITEVLKKLNDVDVT--GHNGDVIGDAYEFLISQFASEAGKKAGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  +   +     +         + +++DPT G+G  + +  +++         
Sbjct: 177 FYTPHEVSDMMARIAAIGQED------KKLFSVFDPTMGSGSLMLNIRSYI-------NH 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY-- 294
           P  +  HGQEL   T+ +    +++  ++ +  R     ++ G TL+KD  T + + +  
Sbjct: 224 PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDTLNKDWPTDEPYTFDS 278

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPP+  KW  D   ++         R+G  L   S     FL+H    L+      G
Sbjct: 279 VLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKDS----G 329

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF T+I T + IL   +
Sbjct: 330 TMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGTSIPTTVIILKKNR 386

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           T      V  I+A++ +T     GK +  ++ +   +I++ Y +RE+ +
Sbjct: 387 TTR---DVLFIDASNEFTK----GKNQNKLSKENIDKIVETYKNREDVE 428


>gi|229496095|ref|ZP_04389817.1| type I restriction-modification system, M subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316991|gb|EEN82902.1| type I restriction-modification system, M subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 823

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 186/492 (37%), Gaps = 79/492 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L   +W++   L G    + +   +L    ++ L                   
Sbjct: 1   MAIKKSQLYRTLWESCNALRGSMDASQYKDYVLIILFVKYLSD----------------- 43

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESYIASFSD-NAKAI----FED 117
            +           G SF         +L         +   + +  + NA+ I      +
Sbjct: 44  KAGQPGFRLNIPEGCSFR-----DFVSLKQNDKIGELMNIKLEAIKEMNARQIGDLALPN 98

Query: 118 FDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVS 171
           F+  + +     + +   L ++   F    L         D ++ + YE+L++ F +E  
Sbjct: 99  FNDPAKLGIGRTMVE--TLSRLIGVFENDALDFSRNRAADDDLLGDAYEYLMKNFAAESG 156

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                F TP +V  +   +L   +    ++      T+YDPTCG+G  L  A+       
Sbjct: 157 RRKGQFYTPAEVSRVMAKVLRIHELDRGEQ------TIYDPTCGSGSLLLRAL------- 203

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
                 P +   GQE +  T A+    ML+  +        +  I+ G TL    F    
Sbjct: 204 -AEASNPRVSICGQEKDGTTAALAKMNMLLHGI-------SNSEIKVGDTLGDPQFKQMG 255

Query: 291 ---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
               F  C++NPPF      +K+      +     R+    LP    G   FLMHL   +
Sbjct: 256 ILSTFDVCVANPPFS-----EKEWFSPALEKDTYERWTKELLPPAKCGDYAFLMHLIASM 310

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      GR A +L    LF G A   E  IR+ ++    I+ I+ LP +LFF T I   
Sbjct: 311 KSEE---GRGACILPHGVLFRGNA---EYTIRKDIIRKRYIKGIIGLPANLFFGTGIPAS 364

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           + ++  +  + R+G +  I+A + +     +G K R + +   ++I+D + +++    + 
Sbjct: 365 IIVIDKKDRDSRKG-IFFIDAKEGYM---KDGAKNR-LREQDIKRIVDAWEAQQPIPHYC 419

Query: 466 RMLDYRTFGYRR 477
           RM+++     ++
Sbjct: 420 RMVEWSEIESKK 431


>gi|327404959|ref|YP_004345797.1| type I restriction-modification system, M subunit [Fluviicola
           taffensis DSM 16823]
 gi|327320467|gb|AEA44959.1| type I restriction-modification system, M subunit [Fluviicola
           taffensis DSM 16823]
          Length = 515

 Score =  268 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/550 (20%), Positives = 206/550 (37%), Gaps = 68/550 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A L   IWK A ++ G     DF   +L     R +            +   Y    
Sbjct: 5   AQRAELQAKIWKIANEVRGSVDGWDFKHFVLGALFYRFISENFTKYIEGGDDGVDYPNLS 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
              I  E     +K  GY  Y  S+  ++   + NT  NL + + +              
Sbjct: 65  DDVITPEIKDDAIKTKGYFIY-PSQLFVNVAKTANTNPNLNTDLKAIFVSIESSAFGYPS 123

Query: 108 SDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEH 161
            ++ K +F DFD       +T+    K   L  + K    +        +  +  + YE 
Sbjct: 124 EEDIKGLFADFDTTSSRLGNTVE--NKNSRLASVLKGVEQLNFGNFEDSEIELFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP  V  L   L +   + + K        +YDP  G+G  L 
Sbjct: 182 LIGNYAANAGKSGGEFFTPVHVSKLIAQLAMHKQEKVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A  H  +              GQE+   T+ +    M +  +  D       NI  G+T
Sbjct: 234 QAKKHFDNHVIEEG------FFGQEINHTTYNLARMNMFLHNVNYDKF-----NIALGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L    F   + F   +SNPP+   W  D D            RF P   L   S     F
Sbjct: 283 LIDPHFGDDKPFDAIVSNPPYSVNWIGDGDPT-----LINDDRFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L       GRAAIV      + G A   E +IR++L++N+ +E ++AL  +LF
Sbjct: 338 VLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETVIALAPNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I+  + +LS  KT+    K Q I+ +        +     ++ D    ++++++ S
Sbjct: 391 YGTSISVTILVLSKHKTD---TKTQFIDVSG--EDFFKKVTNNNVMTDTHIEKVMELFDS 445

Query: 459 RENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           +E+  + +  +D          +     +    ++  +  L+ +   +K +    +    
Sbjct: 446 KEDVPYEAISIDNTKIAENEYNLSVSSYVEAKDNREQINILDLNKEVKK-TVEKINALRA 504

Query: 518 ILKPMMQQIY 527
            +  ++++I 
Sbjct: 505 DIDAIIKEIE 514


>gi|293400125|ref|ZP_06644271.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306525|gb|EFE47768.1| type I restriction-modification system, M subunit
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 496

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 114/541 (21%), Positives = 201/541 (37%), Gaps = 74/541 (13%)

Query: 26  FKHTDFGKVILPFTLLRRLECALE---------------------PTRSAVREKYLAFGG 64
            +  +F   IL       L    E                       + AV E+ L   G
Sbjct: 1   MEAYEFKNYILGMIFYYYLSDRTEKYMANLLKDDGISYEDAWADEEYKEAVVEEALRDLG 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFSST 123
             I+ +   +       N S + +  L        +ES + + S ++   +F D    ST
Sbjct: 61  FIIEPQFLFRKMVKMVENRS-FDIEFL-QKAINALMESTLGNDSQEDFDGLFSDMQLDST 118

Query: 124 IARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +L     +++ ++ KI      I    +     V+ N YE+LI +F +   + A +F 
Sbjct: 119 --KLGHTVKDRSAVMAKIIAALDEINFGVEDTKIDVLGNAYEYLIGQFAATAGKKAGEFY 176

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP     L   L               ++   DPTCG+G  L    N+            
Sbjct: 177 TPSGPAELLCRLACLGLTD--------VKDAADPTCGSGSLLLRLKNYANVRN------- 221

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               +GQEL   T+ +    M++R +        + NI  G TL  D F   +F   ++N
Sbjct: 222 ---YYGQELTSTTYNLARMNMILRGI-----PYRNFNIYNGDTLEHDYFGDMKFRVQVAN 273

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+  KW  D   +E    N         L   S     F+ H+ + ++      GRA +
Sbjct: 274 PPYSAKWSGDLSFMEDPRFNEY-----GKLAPKSKADFAFVQHMVHHMDED----GRAVV 324

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +L    LF G A   E  IR+ L++  ++++A++ LP +LFF T I   + +L   +   
Sbjct: 325 LLPHGVLFRGAA---EEVIRKHLIQKLNVLDAVIGLPANLFFGTGIPVCVLVLKRERNGN 381

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYR 476
               +  I+A++ + +    GK + I+ +    +I++ Y  RE+  K++ +   +     
Sbjct: 382 -SDNILFIDASNDFEA----GKNQNILRECDIDKIVETYERREDVDKYAHVATMQEIEEN 436

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
              +  P  +     +  +   E     RKL           LKP   ++      E   
Sbjct: 437 GFNLNIPRYVDTFEPEEEIDLNEVAAEIRKL-QSEIKDIDAELKPFFDELGLDFPFEVEG 495

Query: 537 K 537
           K
Sbjct: 496 K 496


>gi|312110992|ref|YP_003989308.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y4.1MC1]
 gi|311216093|gb|ADP74697.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y4.1MC1]
          Length = 515

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 98/549 (17%), Positives = 196/549 (35%), Gaps = 73/549 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +++ A  + G     D+   +LP   LR L    E  R  + +            +  ++
Sbjct: 13  LFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDPSSDWYTEDDEMR 72

Query: 75  ----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                      A   F    E S S +     + N++  + +     +   E+ +    +
Sbjct: 73  QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGIL 130

Query: 125 ARLEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
            R+ +   L       + + FS      +T     ++   YE+ I  F +       +F 
Sbjct: 131 PRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGEFF 190

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L  A+L                 ++DP CG+GG    +  +            
Sbjct: 191 TPSSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKH 232

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L  +GQE    T  +    +L+  + ++        I+ G +L  D F   +  Y ++N
Sbjct: 233 ALSFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYVIAN 284

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       +     +  +    R    +   S+ + +++ H    L    N  G A  
Sbjct: 285 PPFN------QKDWGADRLSKNDPRLIGPVTN-SNANYMWMQHFLYHL----NDTGTAGF 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS  +  + 
Sbjct: 334 VMANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKN 391

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                + ++  I+A  + T +     K++ ++ ++  QI  +Y + +     +  D    
Sbjct: 392 GYRARKNEILFIDARKMGTLVSR---KQKALSKEEIDQIAAVYRAYKYDGAEKYEDI--V 446

Query: 474 GYRRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIY 527
           G+ ++ K+       + L            E D+ +  K++ L Q       +    Q  
Sbjct: 447 GFCKVAKIEEVRANDYKLTPGIYVGTEVSNEDDVPFEEKMAELTQRLLEQFEESNRLQEK 506

Query: 528 PYGWAESFV 536
                E  +
Sbjct: 507 IRKDLEELL 515


>gi|325283701|ref|YP_004256242.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus
           proteolyticus MRP]
 gi|324315510|gb|ADY26625.1| Site-specific DNA-methyltransferase (adenine-specific) [Deinococcus
           proteolyticus MRP]
          Length = 522

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 183/468 (39%), Gaps = 55/468 (11%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT  T   ++L   +W  A+ +      K  ++   +L    L   +   +     +   
Sbjct: 1   MTNSTD-LSALEKRLWDAADQMRANSKLKSHEYSTPVLGLVFLSYADYRFQNKAEEI--- 56

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                   +D +    +A    Y   +   S L       N+ + I    +  +A  ++ 
Sbjct: 57  -------GLDADPDDFMAEGVLYVPEKARYSELLKLPEGANIGAAINEAMNAIEA--QNP 107

Query: 119 DFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           D +  + ++       LL  + K+F+  +L    +       ++E+ +  F         
Sbjct: 108 DLTGALPKMYNRLDNSLLAGMLKSFTFSDLT-AGLQGDAFGRVFEYFLGEFARNEGSKGG 166

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP+ +V L   ++                 +YDP CG+GG    +   V        
Sbjct: 167 EFYTPQSLVKLMVEIM-----------EPFHGKIYDPACGSGGMFVQSARFVEQHQRSA- 214

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHY 294
               L  +GQE   ET  +    + I  L  D        I+QG+T  +DL     +F +
Sbjct: 215 -ADDLSVYGQEKTSETARLARMNLAIHGLSGD--------IKQGNTFYEDLHASPGKFDF 265

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF          V+KE  + +  R   G P   + + L+L ++A+ L    N GG
Sbjct: 266 AMANPPFNV------KGVDKERISNDQKRLPYGTPSTDNANYLWLQYIASSL----NSGG 315

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RA +V+++S      A   E  IR+ ++E+ +++ +VA  ++LF+   +   LW +   K
Sbjct: 316 RAGVVMANSA---SDARGSEQLIRQRMIEDGVVDVMVATSSNLFYTVTLPATLWFMDKGK 372

Query: 415 TEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
               R   V  I+A + +  +    ++ R    +    I+++Y    +
Sbjct: 373 KGTPREDTVLFIDARNTYQQVTRAIRELRDDQVELLANIVNLYRGEAD 420


>gi|295401867|ref|ZP_06811831.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976121|gb|EFG51735.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 515

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 97/549 (17%), Positives = 194/549 (35%), Gaps = 73/549 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +++ A  + G     D+   +LP   LR L    E  R  + +            +  ++
Sbjct: 13  LFEAANKMRGSVAPADYKHYVLPLIFLRYLSNKYEKRRKELEQIVKDPSSDWYTEDDEMR 72

Query: 75  ----------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                      A   F    E S S +     + N++  + +     +   E+ +    +
Sbjct: 73  QIIITDPDQYKAENVFVVPEEASWSYIMKNAKQPNIKEILDNAMKRLEE--ENPELEGIL 130

Query: 125 ARLEKAGLL-----YKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFM 178
            R+ +   L       + + FS      +T     ++   YE+ I  F +       +F 
Sbjct: 131 PRIYQGSNLPPENVAGLIEIFSRDVFSANTDDSVDILGRTYEYFISSFAASEGNRGGEFF 190

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L  A+L                 ++DP CG+GG    +  +            
Sbjct: 191 TPSSIVKLLVAML-----------EPKSGIVFDPACGSGGMFIQSEEY-------APNKH 232

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            L  +GQE    T  +    +L+  + ++        I+ G +L  D F   +  Y ++N
Sbjct: 233 ALSFYGQENVVTTVRLGKMNVLLHGINAE--------IRLGDSLLNDQFPDLKADYVIAN 284

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF       +     +  +    R    +   S+ + +++ H    L    N  G A  
Sbjct: 285 PPFN------QKDWGADRLSKNDPRLIGPVTN-SNANYMWMQHFLYHL----NDTGTAGF 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+++  +        E E+R+ L++   I+ IV LP  LFF T I   L+ LS  +  + 
Sbjct: 334 VMANGAMTTNVKE--EKEVRQKLVDEGYIDCIVQLPEKLFFTTGIPCCLFFLSKNRDGKN 391

Query: 419 -----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                + ++  I+A  + T +     K++ ++ ++  +I  +Y + +        D    
Sbjct: 392 GYRARKNEILFIDARKMGTLVSR---KQKALSKEEIDKIAAVYRAYKYEGAEGYEDV--V 446

Query: 474 GYRRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIY 527
           G+ ++  +       + L            E DI +  K++ L Q       +    Q  
Sbjct: 447 GFCKVATIDEVRANDYKLTPGIYVGTEVSDEDDIPFEEKMAELTQRLLEQFEESNRLQEK 506

Query: 528 PYGWAESFV 536
                E  +
Sbjct: 507 IKKDLEELL 515


>gi|294502095|ref|YP_003566160.1| Type I restriction modification enzyme, M subunit [Salinibacter
           ruber M8]
 gi|294342079|emb|CBH22744.1| Type I restriction modification enzyme, M subunit [Salinibacter
           ruber M8]
          Length = 510

 Score =  267 bits (684), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 116/544 (21%), Positives = 196/544 (36%), Gaps = 66/544 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            + +   L + ++  A+ +      TD+   ILP    + +    +       E+     
Sbjct: 15  MSLTLDELESHLYGCADKIRNAVDKTDYKDFILPLVFYKTISDTYQDELEKWTEELG--- 71

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---------TRNNLESYIASFSDNAKAI 114
               D +       + F     YS   L + N             L +   +  +  + +
Sbjct: 72  ----DEDLARDPDLHDFVVPEGYSWEKLRALNPQETNYDEFIGEALNAIEDANPEKLEGV 127

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F                 L  + ++ S   L  + VP  ++   Y  L+R F  E  +  
Sbjct: 128 FRADYVR---EDALDNTRLGALVEHLSTYNLSANNVPPDMLGEAYMDLVRHFAEEEGKEG 184

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L   L+            G     +DPT G+GG L +A +H  D     
Sbjct: 185 GEFFTPPKIVRLMVCLVAPF---------GDGDEFHDPTVGSGGMLVEAAHHYRD--EQD 233

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
             P  L   GQEL P+  A+    + I              I++  +L    FT      
Sbjct: 234 GEPSHLRLTGQELNPDIAAIAKMNLFIHGYNG--------QIEREDSLGAPQFTENGQLG 285

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLEL 348
            F Y L+N PF   W K       + ++   GRF     LP+   G   F+MH+AN+L  
Sbjct: 286 CFDYVLANFPFSADWPKS------DLQDDAYGRFDWHEKLPRADRGDYAFIMHMANQL-- 337

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             N  G+AAIV+    LF       E   R  +LE DL+EA++ LP +LF   +I + + 
Sbjct: 338 --NATGQAAIVIPHGVLFR----KYEGRYREPMLEGDLVEAVIGLPENLFQNNSIPSAIL 391

Query: 409 ILSNRKTEERRGKVQLINATD--LWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFS 465
           +L+  K EER G+V  ++A D   +  + N    +  + +     I+  +       + S
Sbjct: 392 VLNRDKPEEREGEVLFVHAADEAFYEELSN----QNELTEGGLDHIIRNFNDWITEERVS 447

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           R +           +   L +     +  +   E     R L    +      L   M+ 
Sbjct: 448 RAVPIEEIRENDYNLNIALFVDTTEPEEPIDVAEELTKLRHLQE-ERDEIESQLNEYMKA 506

Query: 526 IYPY 529
           +   
Sbjct: 507 LDYE 510


>gi|241888682|ref|ZP_04775989.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
 gi|241864705|gb|EER69080.1| type I restriction-modification system, M subunit [Gemella
           haemolysans ATCC 10379]
          Length = 526

 Score =  267 bits (683), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 122/555 (21%), Positives = 210/555 (37%), Gaps = 78/555 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLAFGG 64
             A L   IW+ A+D+ G     DF + IL     R +   +     R+      + F  
Sbjct: 13  QRAELHRKIWEIADDVRGAVDGWDFKQYILGILFYRFISENMRDYFNRAEREAGAVDFNY 72

Query: 65  SNIDLESFVK------VAGYSFYNTSEYSLSTLGSTNTR-NNLESYIA------------ 105
           + +  +  +K      V    F+         +  T T+ +NL + +             
Sbjct: 73  AELSDDEALKYFKPGTVKEKGFFILPSQLFENIVKTATKEDNLNAKLDTIFKEIEASAIG 132

Query: 106 -SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-RVMSNI 158
            +  ++ K +F D D +S   RL     EK   L  I    S +              + 
Sbjct: 133 SASEEDFKGLFRDVDLTS--DRLGESVPEKNMKLTSILVGISELNFGNFEDNHIDAFGDA 190

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + S   +   +F TP+ V  L   +++D  D         I  +YDPTCG+G 
Sbjct: 191 YEYLISNYASNAGKSGGEFFTPQTVSRLLAKIVVDGKD--------KINKVYDPTCGSGS 242

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L               +      +GQE+    + +    M +  +  +        I++
Sbjct: 243 LLLQMRKF-------ECVEIEEGYYGQEINMTNYNLARMNMFLHNVNYNDFS-----IKR 290

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G TL       +R F   +SNPP+  KW  D D            RF P   L   S   
Sbjct: 291 GDTLLNPYHGEERPFDAIVSNPPYSIKWIGDADPT-----LINDERFAPAGKLAPKSYAD 345

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+MH  + L       GRAAIV      +   A   E  IR++L++N+ ++ ++ LP 
Sbjct: 346 YAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---EKTIRKYLVDNNFVDCVIQLPD 398

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T+IAT + +L+  KTE    K   I+A+  +    N      I+ +     I++ 
Sbjct: 399 NLFFGTSIATCVLVLAKNKTE---NKTLFIDASKEFKKETN----NNILEEKNIDNIIEE 451

Query: 456 YVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA----RLEADITWRKLSPL 510
           + +R + + FSR +D          +     +     +  +       E   T  K+  L
Sbjct: 452 FRNRADVEHFSRYVDSSEIEENDYNLSVSTYVEKEDTREKIDIKVLNKEIAETVEKIDEL 511

Query: 511 HQSFWLDILKPMMQQ 525
            ++   +I++ +   
Sbjct: 512 -RASIDEIVRELESD 525


>gi|15678962|ref|NP_276079.1| type I restriction modification enzyme, subunit M
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622040|gb|AAB85440.1| type I restriction modification enzyme, subunit M
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 616

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 114/521 (21%), Positives = 204/521 (39%), Gaps = 59/521 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A +   +   A+ +        +   IL    ++++            E   A     + 
Sbjct: 119 ADIERILKGAADLIRTRVD---YK-FILVLLFMKQMSDKWMMEYQKAYE--DAIKEYGLS 172

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIFEDF 118
            E     A  S Y+  +     L   N R ++E+           +A  +   K + + F
Sbjct: 173 EEEARLEARNSAYHDLDIKEEYL-WDNIRKDVENLPIKFAGALKNLAELNPAFKDVVDAF 231

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF       E   +L ++ + FS  +L    V   ++ + YE ++R F    ++   +  
Sbjct: 232 DFVEFTQSQENREILRQLVELFSEKKLT--NVDPDILGDAYEWILRYFAPTKAKE-GEVY 288

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L           P    ++YDP   + G L  +  +V +     +   
Sbjct: 289 TPREVIRLLVEIL----------DPKPGESVYDPASASNGMLIISHKYVKETYGEAE--- 335

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            L  +GQE+  +T A+    M I  ++         +I  G TL    F       RF  
Sbjct: 336 RLFLYGQEVNRKTMALGSMNMYIHDIK-------DHHIAHGDTLLYPKFKESDGIMRFDV 388

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+ +    +    + ++      RF  G          ++ H+    +      G
Sbjct: 389 VIANPPWNQDGYGEDTLKKGDYWRE---RFRYGFVNKQSADWAWIQHMIASAKDD----G 441

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R  +V+ +  LF G     E  IR  +LE+DLIEA++ LP  LF+ T     + IL+  K
Sbjct: 442 RIGVVIDNGCLFRGGR---EKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNKDK 498

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTF 473
            EERRGKV  INA + +       +K  I++D    +IL+ Y   + +  FSR++D    
Sbjct: 499 DEERRGKVLFINAGEEYEKHPEV-RKLNILSDGNIERILEAYREFQGDDGFSRVVDLDEI 557

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                 +  PL   +   +  L  ++    W +LS + +  
Sbjct: 558 RENDYNLNVPL---YAFPEEELEDIDVAGEWMRLSEIEEEL 595


>gi|327330728|gb|EGE72474.1| type I restriction-modification system, M subunit
           [Propionibacterium acnes HL097PA1]
          Length = 522

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 102/508 (20%), Positives = 191/508 (37%), Gaps = 80/508 (15%)

Query: 1   MTEFTG--SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE- 57
           M   T     + L   IW+ A DL G     DF   +L     R +    E     + E 
Sbjct: 1   MVPTTKEMQRSELHKTIWRIANDLRGSVDGWDFKTYVLGMMFYRFIS---ENLTDYINEG 57

Query: 58  ---------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASF 107
                     Y     ++        V    F+         + +   ++ NL   +   
Sbjct: 58  EWRAGDTDFNYCNLSNADAKDIFEEMVTEKGFFIFPSDLFVNVRARAAQDENLNETLEGV 117

Query: 108 SDNA-------------KAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPD 148
             N              K +F D D +S   RL     ++   L K+      + L   +
Sbjct: 118 FRNIEGSAAGTPSERDLKGLFADLDVNS--PRLGATVAQRNRKLVKVLDAIGDLPLGSFE 175

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                +  + YE+L++ + S+  +   ++ TP++V  +   + +             I  
Sbjct: 176 DNSIDLFGDAYEYLMQMYASQAGKSGGEYFTPQEVSEVLARIAVGDKK--------RIGK 227

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP  G+G  L      +           +   +GQE+   T+ +    M +  +  + 
Sbjct: 228 VYDPAVGSGSLLLKFAKLL-------GPENVKGFYGQEINLTTYNLARINMFLHGINYE- 279

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 +I  G TL+  +   K  F   +SNPP+  KWE   + +          R+ P 
Sbjct: 280 ----QFDIVLGDTLTNPMHRDKEPFEAIVSNPPYSTKWEGSDNPL-----LINDDRYAPA 330

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S   + F MH+ + L       G AA+V     L+   A   E +IR++L++N+
Sbjct: 331 GVLAPKSKADLAFTMHILSSLAT----NGTAAVVEFPGVLYRVGA---ERKIRKYLIDNN 383

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            ++ ++ LP DLFF T IAT + +L   K +     V  ++A+  ++     G K ++++
Sbjct: 384 YVDTVIQLPPDLFFGTTIATCVIVLKKSKKDNS---VLFVDASAEFS---RVGNKNKLLS 437

Query: 446 DDQRRQILDIYVSR-ENGKFSRMLDYRT 472
            +Q  +I+++  +R E      ++    
Sbjct: 438 ANQ-DRIVELVSARSEEPHVCTLVHNED 464


>gi|116330071|ref|YP_799789.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116123760|gb|ABJ75031.1| Type I restriction-modification system, methyltransferase subunit
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 513

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 182/489 (37%), Gaps = 65/489 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE---PTRSAVRE 57
           MT      A+L   IW+ A D+ G     DF + +L     R +            +  +
Sbjct: 1   MT-SAQQRAALQRQIWQIANDVRGAVDGWDFKQYVLGTLFYRFISENFTNYMEGGDSSID 59

Query: 58  KYL--------AFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTR---NNLESYIA 105
                            I    +       F N  S+   +   +T+       +E+   
Sbjct: 60  YAKLPDKRITREIKDDAIKTRGYFIYPSQLFANVVSKADDNESLNTDLAAIFKAIETSAN 119

Query: 106 SFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SNI 158
            F  +   I   F DF +T  RL     +K   L  + K  + ++          +  + 
Sbjct: 120 GF-PSEHDIKGLFADFDTTSNRLGNTVKDKNSRLAAVLKRVAELDFGDFDSSHIDLFGDA 178

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI  + +   +   +F TP+ V  L   L +             I  +YDP CG+G 
Sbjct: 179 YEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAI--------HKQTRINKIYDPACGSGS 230

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A     D              GQE+   T+ +    M +  +  D       +I+ 
Sbjct: 231 LLLQAKKQFDDHIIEEG------FSGQEINHTTYNLARMNMFLHNINYDKF-----DIEL 279

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGS 335
           G+TL       ++ F   +SNPP+   W+   D            RF P   L   S   
Sbjct: 280 GNTLIDPKHNNEKPFDAIVSNPPYSINWKGSDDPT-----LINDERFAPAGVLDPKSKAD 334

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  
Sbjct: 335 FAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNFVETVISLAP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LFF T IA  + +LS  KT+      Q I+A+ L+    N      I+ D    QI+  
Sbjct: 388 NLFFGTTIAVNILVLSKHKTDTNT---QFIDASGLFKKETNT----NILTDKHIEQIMQT 440

Query: 456 YVSRENGKF 464
           + S+ + + 
Sbjct: 441 FDSKIDKEH 449


>gi|229521080|ref|ZP_04410501.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
 gi|229341965|gb|EEO06966.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae TM 11079-80]
          Length = 529

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 119/491 (24%), Positives = 181/491 (36%), Gaps = 67/491 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKY 59
              A L   IW  A D+ G     DF + +L     R +                     
Sbjct: 5   QQRAELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGDESVNYAAMS 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-------- 111
                     E  +K  GY  Y  S+   +   + +   NL + +A+             
Sbjct: 65  DDDENIKFAKEDAIKTKGYFLY-PSQLFSNVAANAHKNENLNTDLAAIFAAIENSANGYD 123

Query: 112 --KAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYEHL 162
             K I   F DF +T  RL      K   L  + K  SG+     +     +  + YE L
Sbjct: 124 SEKDIKGLFADFDTTSNRLGNTVEAKNKCLAAVLKGVSGLNFGSFEENQIDLFGDAYEFL 183

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L  
Sbjct: 184 ISNYAANAGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H                 GQEL   T+ +    M +  +  D       NIQ G TL
Sbjct: 236 AKKHFDAHIIEDG------FFGQELNHTTYNLARMNMFLHNINYDKF-----NIQLGDTL 284

Query: 283 SKDLFTGKR----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSM 336
            +  F  +R    F   +SNPP+  KW    D            RF P   L   S    
Sbjct: 285 IEPHFLEERNNRGFDAIVSNPPYSVKWIGSDDPT-----LINDDRFAPAGVLAPKSKADF 339

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E +++L  +
Sbjct: 340 AFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRQYLVDNNYVETVISLAPN 392

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN---EGKKRRIINDDQRRQIL 453
           LFF T IA  + +LS  KT+      Q I+A+ L+    N           N    +QI+
Sbjct: 393 LFFGTTIAVNILVLSKHKTDTTT---QFIDASGLFKKETNNNVLTDNDDEKNPGHIQQII 449

Query: 454 DIYVSRENGKF 464
            ++ S+EN   
Sbjct: 450 KVFASKENVDH 460


>gi|325281058|ref|YP_004253600.1| type I restriction-modification system, M subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324312867|gb|ADY33420.1| type I restriction-modification system, M subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 518

 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 113/486 (23%), Positives = 190/486 (39%), Gaps = 66/486 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
                L + IWK A ++ G     DF + +L     R +            +   Y +  
Sbjct: 5   QQREQLQSQIWKIANEVRGAVDGWDFKQFVLGTLFYRFISENFTDYIEGGDDSIDYASLP 64

Query: 64  GSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
            S I  E     VK  GY  Y  S+   + + + NT  NL + + +              
Sbjct: 65  DSVITPEIKDDAVKTKGYFIY-PSQLFGNVVKTANTNPNLNTDLKAIFDSIESSANGYAS 123

Query: 108 SDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEH 161
             N K +F DFD       +T+    K   L  + K   G+     +     +  + YE 
Sbjct: 124 EKNIKGLFADFDTTSTRLGNTVE--NKNSRLAAVLKGVEGLNFGNFEEHEIDLFGDAYEF 181

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI  + +   +   +F TP++V  L + L +     + K        +YDP  G+G  L 
Sbjct: 182 LINNYAANAGKSGGEFFTPQNVSKLISQLAMHKQATVNK--------IYDPAAGSGSLLL 233

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A     D              GQE+   T+ +    M +  +  D       NI  G+T
Sbjct: 234 QAKKQFEDRIIEDG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NIALGNT 282

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLF 338
           L+   F   + F   +SNPP+   W    D            RF P   L   S     F
Sbjct: 283 LTDPQFGDDKPFDAIVSNPPYSVNWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAF 337

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H  + L       GRAAIV      + G A   E +IR++L++++ IE I++LP++LF
Sbjct: 338 VLHSLSYLSSR----GRAAIVCFPGIFYRGGA---EQKIRKYLVDSNFIETIISLPSNLF 390

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+IA  + +LS  K +    K+Q I+A+      +       ++ +    +I+D +  
Sbjct: 391 YGTSIAVNILVLSKHKPD---TKIQFIDASGESFFTKET--NNNVLENKHIDRIIDFFDK 445

Query: 459 RENGKF 464
           +E+  +
Sbjct: 446 KEDVDY 451


>gi|91216783|ref|ZP_01253747.1| type I restriction-modification system DNA methylase [Psychroflexus
           torquis ATCC 700755]
 gi|91184944|gb|EAS71323.1| type I restriction-modification system DNA methylase [Psychroflexus
           torquis ATCC 700755]
          Length = 546

 Score =  266 bits (681), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 198/594 (33%), Gaps = 81/594 (13%)

Query: 1   MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +    A  +    +WK A +L G      +   ILP   L+ +    E  +  + +  
Sbjct: 1   MPKNQTKADINFEQELWKAANELRGAVAENQYKDYILPLIFLKHISEKYEVRKEELFQAL 60

Query: 60  LAFGGSNID----------LESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---------- 99
              G                +    ++  ++    E +   L     ++N          
Sbjct: 61  NDKGSDYYTNDTEEQNYVLEDPDEYLSKNTYIIPKEATWQYLQDNAEQDNIKVLVDNAFD 120

Query: 100 -LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK-NFSGIELHPDTVPDRVMSN 157
            L+  +A F    K I       S +   + AGL+  + K   S  E         ++  
Sbjct: 121 LLDDTLAEFRPELKGILPRIFVKSQLTPKQVAGLINLLAKPKLSEKENPGS----DILGR 176

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+ I +F      GA  F TP  +V L   ++                 ++D  CG+G
Sbjct: 177 VYEYYIGKFAIAEGSGAGQFFTPSSIVRLLVEMI-----------EPYQGKIFDNACGSG 225

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G    ++  +   G        +  +GQE    T  +C   + +R L  D        ++
Sbjct: 226 GMFIQSLKFLQAHGGD---KKNISIYGQERYDGTLRLCKMNLALRDLSFD--------VR 274

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSM 336
            G +L +D F      + + NPPF       +D         G    F        + + 
Sbjct: 275 LGDSLLQDKFPDLEADFIIVNPPFNVSQWHPEDLPENDPRLFGTKEEF----TTDGNANY 330

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +++    N L    +  G AA+V+++  + +     GE  +R+ ++++ +++ IV LP  
Sbjct: 331 MWMQTFWNHL----SDTGTAAVVMANGAMTSN--TKGEKNVRQHMVDHGMVDCIVRLPDK 384

Query: 397 LFFRTNIATYLWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LF  T I   ++ILS        K  +R  +V  I+ +           K R+ ++   +
Sbjct: 385 LFLTTGIPACIFILSKNRDGKDGKHRKRDNEVLFIDLSKHGRMESR---KLRVFDEADLQ 441

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +  D Y +  N K S                        +D+ G +         K    
Sbjct: 442 KATDTYHAWRNIKDSVTSSDSAKA------ELYREADTYIDQPGFSYSANLEEIAKQDYK 495

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
                    + +     P+      +K  +++        K   +     ++ F
Sbjct: 496 LTPGIYVGTEAVEDDGIPFEHKMETLKAQLQTQ------FKTGNALQKQILDNF 543


>gi|86158751|ref|YP_465536.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775262|gb|ABC82099.1| N-6 DNA methylase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 538

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 120/571 (21%), Positives = 215/571 (37%), Gaps = 55/571 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           TE   +AA+L   +W  A++L      K  ++ + IL    L+  +      R+ + +  
Sbjct: 7   TEKDVAAATLEKRLWAAADELRANSGLKSAEYSQPILGLIFLKFADARFAVRRAELAKVT 66

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
               GS +D  +     G  F   SE   S L            +    D+A    E  +
Sbjct: 67  TGRRGSRVDDPASYHAEGVLF-LASEARFSELLEFPEGGRDGKTLGQAVDDAMRAVERDN 125

Query: 120 --FSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              +  + +     KA  L ++ K FS I   P  +       IYE+ +  F     +G 
Sbjct: 126 EQLAGVLPKTYQQFKARPLKELLKAFSAI---PVDLEGDSFGKIYEYFLGEFAMAEGQGG 182

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ +V L   +L                 + DP CG+GG    +   V++     
Sbjct: 183 GEFYTPQPIVRLMVEIL-----------EPFKGRVLDPACGSGGMFVQSARFVSEH---- 227

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTG-K 290
           K    L  HG E    T  +C   + +  LE D        I+ G   ++   D      
Sbjct: 228 KKNGGLAIHGVEKVDTTGQLCRMNLAVHGLEGD--------IRHGGEINSYYDDPHNAVG 279

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF + L+NPPF    + DKD +      G   RF  G+P + + + L++    + L    
Sbjct: 280 RFDFVLANPPFNVD-KVDKDRIRD--AVGPGRRFPFGVPNVDNANYLWIQLFYSALNES- 335

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GRA  V++SS      A + E E+RR L+E+  ++ I+++ + +F+   +   LW L
Sbjct: 336 ---GRAGFVMASSA---PDARASEQELRRKLIESRAVDVIISVGSKMFYTVALPCTLWFL 389

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              K ++RR KV  I+A  ++   R   +  R   + Q   + ++       +       
Sbjct: 390 DRGKPKDRRDKVLFIDAQHIY---RQVDRAHRDWTEAQIGFLANVARLFRREEVDLTFGG 446

Query: 471 RTFGYRRIKVL--RPLRMSFI--LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
               YR  +V   +P             ++ +E             +   + +     + 
Sbjct: 447 AEAKYRLREVFGNKPTYADVAGFCKAATISEIEKQAWSLNPGRYVGAAQGEEVSDEDFRT 506

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
              G AE F   + ++ E + +  K +   +
Sbjct: 507 QFEGLAEEFETLTAEAREFEKVITKTAAEIL 537


>gi|313611002|gb|EFR85913.1| type I restriction enzyme EcoprrI M protein [Listeria monocytogenes
           FSL F2-208]
          Length = 417

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 94/448 (20%), Positives = 154/448 (34%), Gaps = 72/448 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR------------SA 54
           ++  +   +W  A +L G    + +   +L     + L      T               
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLETYKSIAGKGQLSEAEL 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103
           V E          +L+  ++     F        + L                  N E  
Sbjct: 63  VEEYVKDRAYHGENLDKMIQSVLGYFVLPEHLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           I  +  SD+ + +F       T   L     E++  +  + + F  + +        V+ 
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMV-ALQKSDVLG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE+LI +F  E  + A +F TPR V  +   +               I ++YDPT G+
Sbjct: 182 DAYEYLIGQFAMESGKKAGEFYTPRQVSEVMAQIAA---------KTSNITSIYDPTVGS 232

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L     H+ +      +   L  +GQE    T+ +    +L+  +  +        +
Sbjct: 233 GSLLLTVKKHLKE-----DVQKDLNYYGQEKNTATYNLTRMNLLLHGVHPEKMS-----V 282

Query: 277 QQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-- 327
           + G TLS+D             F   + NPP+            K +      RF     
Sbjct: 283 KNGDTLSEDWPEDPSRPAEGVLFDAVVMNPPYSLAN------WNKSNLKVSDPRFEIAGV 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S G   FL+H    L       G  AIVL    LF G     E EIR+ LL  + I
Sbjct: 337 LPPDSKGDFAFLLHGLYHL----GQTGTMAIVLPHGVLFRGGT---EGEIRKRLLNKNYI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT 415
           + I+ LP +LF  T I   + IL   + 
Sbjct: 390 DTIIGLPGNLFTNTGIPVCVLILKKNRA 417


>gi|146302128|ref|YP_001196719.1| type I restriction-modification system, M subunit [Flavobacterium
           johnsoniae UW101]
 gi|146156546|gb|ABQ07400.1| type I restriction-modification system, M subunit [Flavobacterium
           johnsoniae UW101]
          Length = 515

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 115/491 (23%), Positives = 190/491 (38%), Gaps = 67/491 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           MT  T   A L   IWK A ++ G     DF + +L     R +         A  +   
Sbjct: 1   MT-STAQRAELLAKIWKIANEVRGAVDGWDFKQFVLGTLFYRYISENFTNYIEAGDDSID 59

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI----------- 104
           Y +     I  E     +K  GY  Y  S+  ++   + NT  NL + +           
Sbjct: 60  YASLSDDVITPEIKDDAIKTKGYFIY-PSQLYVNIAKTANTNPNLNTDLKNIFTAIESSA 118

Query: 105 ASF--SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMS 156
             +   +  K +F   DF +T +RL      K   L  + K    +     +     +  
Sbjct: 119 NGYPSEEAIKGLFA--DFDTTSSRLGNTVENKNSRLASVLKGVEELNFGNFEDNKIDLFG 176

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP  V  L   L +   + + K        +YDP  G+
Sbjct: 177 DAYEILISNYAANAGKSGGEFFTPVHVSKLIAQLAMHKQEKVNK--------IYDPAAGS 228

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A  H  D              GQE+   T+ +    M +  +  D       NI
Sbjct: 229 GSLLLQAKKHFDDHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYDK-----FNI 277

Query: 277 QQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333
             G TL    +   + F   +SNPP+  KW  D D            RF P   L   S 
Sbjct: 278 ALGDTLHHPHYIDDKPFDAIVSNPPYSIKWIGDDDPT-----LINDDRFAPAGVLAPKSK 332

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E I+++
Sbjct: 333 ADFAFVLHALSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLVDNNFVETIISV 385

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             +LF+ T+IA  + +LS  KT+      Q I+A+        +     ++ D    +I+
Sbjct: 386 APNLFYGTSIAVTILVLSKHKTDTTT---QFIDASG--EDFFKKVTNNNMMTDTHIDKIM 440

Query: 454 DIYVSRENGKF 464
           +++ S+ + + 
Sbjct: 441 ELFDSKVDVEH 451


>gi|296121477|ref|YP_003629255.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
 gi|296013817|gb|ADG67056.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
          Length = 533

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 177/477 (37%), Gaps = 61/477 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                  +   +W +A++L      K +++   +L    LR  +         +   +  
Sbjct: 1   MANGHTEIERRLWASADELRANSKLKSSEYSVPVLGLIFLRYADHRFTQAERELNVLFAK 60

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNL---ESYIASFSDNAKAI 114
             GS   +      A    +   E   S L       +    +      I   ++  K I
Sbjct: 61  KSGSRRAIGKEDFQAKGVMFLPPESRFSALLELPEGEDIGKAITTAMKAIEKENEELKGI 120

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   T +++E    L  + KN S I   P          IYE+ +  F     +  
Sbjct: 121 LPK-----TYSKIE-NTTLVSLLKNLSSI---PVDAEGDTFGKIYEYFLGNFARAEGQKG 171

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L   ++                 +YDP CG+GG    + + +     H+
Sbjct: 172 GEFFTPTSLVKLIVEII-----------QPYHGRIYDPACGSGGMFVQSADFIKAH--HN 218

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293
                +  +GQE   ET  +C   + +  L  D        I+QG+T  +D      +F 
Sbjct: 219 NPAVEISIYGQERVDETRQLCQMNLAVHGLSGD--------IRQGNTYYEDPHESVGKFD 270

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF             + K  E  RF  G+P+  + + L++    + L    N  
Sbjct: 271 FVMANPPFNVD-------KVDKEKLKEDPRFPLGMPRADNANYLWIELFYSSL----NAT 319

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+++S      A   E EIR+ LL+  +++ ++A+  + F+   +   LW L   
Sbjct: 320 GRAGFVMANSA---ADARQSEMEIRQKLLKAHVVDVMIAIGPNFFYTVTLPCTLWFLDKG 376

Query: 414 KTE------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           K+       +R+ +V  I+A  ++  +    +K      +    I+ +Y   E  +F
Sbjct: 377 KSNLSGKGSQRKEQVLFIDARHIFRQVDRAHRKFSPKQLEYIANIVRLYRG-EQPEF 432


>gi|290969061|ref|ZP_06560596.1| type I restriction-modification system, M subunit [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781017|gb|EFD93610.1| type I restriction-modification system, M subunit [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 527

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 116/560 (20%), Positives = 207/560 (36%), Gaps = 78/560 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------EPTR 52
           T+       L   IW  A++L G     DF   IL     R +   L         E  +
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENLTNYINHGEIEAGK 63

Query: 53  SAVR------EKYLAFGGSNIDLESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESY 103
                     E+        ++ + F  +    F N    S   +    + +    LE+ 
Sbjct: 64  PNWDFAKISDEEAEEARAGLVEEKGFFILPSELFANIRKKSNEDMEWAKA-HLNETLEAV 122

Query: 104 IASFSDNAKA---------IFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-D 148
                ++++          +F DFD +S   +L     ++   L K+    + + L    
Sbjct: 123 FRHIEESSQGSEAESDFAGLFADFDVNS--NKLGATVAKRNEKLVKLLNGVADMNLGSVQ 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   + YE+L+  + S   +   +F TP DV  L T L       + K        
Sbjct: 181 DHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVRKTEVNK-------- 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG+G  L              K       +GQE+   T+ +C   M +  +E D 
Sbjct: 233 VYDPACGSGSLLLK------SLKVLGKEGVRNGFYGQEINITTYNLCRINMFLHDVEFDK 286

Query: 269 RRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 ++    TL        + F   +SNPP+  KW   +DA           RF P 
Sbjct: 287 F-----DVACEDTLVSPQHWDDEPFELIVSNPPYSIKWAGSEDAT-----LINDPRFAPA 336

Query: 328 --LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             L   S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+
Sbjct: 337 GVLAPKSKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EKKIRQYLVDNN 389

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+ I+ LP++LFF T+IAT + ++   KT+ R      I+A++    + N       + 
Sbjct: 390 FIDCIIQLPSNLFFGTSIATCIMVMKKNKTDNRT---LFIDASNECVKVTN----NNKLT 442

Query: 446 DDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
            +   +I+ I+  RE     + +  Y         +     +     +  +  ++ +   
Sbjct: 443 PENIDRIVAIFTKREEVAHIAHLASYEEVKENDFNLSVSTYVEAADTREKIDIVKLNAEI 502

Query: 505 RKLSPLHQSFWLDILKPMMQ 524
           +++    Q    +I K + +
Sbjct: 503 KEIVAREQVLREEIDKIIAE 522


>gi|149196779|ref|ZP_01873832.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Lentisphaera araneosa
           HTCC2155]
 gi|149139889|gb|EDM28289.1| putative type I restriction-modification system, methyltransferase
           subunit (N-6 DNA Methylase) [Lentisphaera araneosa
           HTCC2155]
          Length = 862

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 106/542 (19%), Positives = 201/542 (37%), Gaps = 80/542 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------EPTRSAVR 56
           +   LA  IW++A  +    +  ++   IL F   + L   L          E     + 
Sbjct: 2   NKQELAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSVQLTNFALEQGMTEEDIEGLN 61

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAK 112
           E+  A          +       F      +     +  T  N+   +++F      N K
Sbjct: 62  EEDEATVDYFKQELGYFISYDDLFS-----TWLKPETEFTVANVRDALSAFGRLIHPNHK 116

Query: 113 AIFED-FD-FSSTIARLEKA--------GLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            +F+  F+   + +++L ++          L  + KN              V+  IYE+L
Sbjct: 117 KLFDGIFNTLETGLSKLGESAQKQTKAINDLLHLIKNI----PMDGQQGYDVLGFIYEYL 172

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F +   + A +F TP +V  L + +                  +YDPT G+G  L +
Sbjct: 173 IEKFAANAGKKAGEFYTPHEVSLLMSEITAHHLKGN------ETIEIYDPTSGSGSLLIN 226

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               V     + +    +  + QEL+  T+ +    +++R +  +        ++ G TL
Sbjct: 227 IGTSV---AKYIENKDSIKYYAQELKGNTYNLTRMNLIMRGILPNNIE-----VRNGDTL 278

Query: 283 SKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +D            +   R    +SNPP+ +KW+      +         RF  GL   
Sbjct: 279 EEDWPYFDDNDPHGSYRHLRVDAVVSNPPYSQKWDSVNKETDPR-----YARF--GLAPK 331

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +     FL+H    ++      G  +IVL    LF       E EIR+ L+EN+ IE I+
Sbjct: 332 TKADFAFLLHDLYHVKPD----GIMSIVLPHGVLFRVGE---EGEIRKQLIENNHIETII 384

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP ++FF T I T + +L  ++       V +++A+  +        K   +     ++
Sbjct: 385 GLPANIFFGTGIPTIILVLRQKRQG---DDVLIVDASKHFIKE----GKSNKLQASDIKR 437

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           ++D  ++R++  KFSR++           +  P  +    D          +     S +
Sbjct: 438 VVDTVINRDDRDKFSRLVKKSEIRENEYNLNIPRYVDSSEDAENWDLHATMLGGIPNSEI 497

Query: 511 HQ 512
            Q
Sbjct: 498 DQ 499


>gi|19881311|gb|AAM00901.1|AF486570_2 HsdM [Campylobacter jejuni subsp. jejuni ATCC 33560]
 gi|19698527|gb|AAL93191.1| type I restriction enzyme M protein [Campylobacter jejuni]
          Length = 509

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 107/532 (20%), Positives = 194/532 (36%), Gaps = 80/532 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
             L   IWK A DL G     DF   +L F     +    E  ++ V + +     +  D
Sbjct: 8   EELHKTIWKIANDLRGSVDGWDFKSYVLGFLFYYFIC---ENLKNYVLKSFEQDYENLSD 64

Query: 69  L------ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDN------ 110
                  ++ +   G  F+    +  S +       NL   ++        S N      
Sbjct: 65  EMAENGRDTIINAKG--FFIKPSHLFSNIFKNAKLENLNEKLSVVFKEIESSANGSESEK 122

Query: 111 -AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
             K +F+D D  S        E+   + KI +  S ++LH +        + YE L+  +
Sbjct: 123 SFKGLFDDLDLYSNKLGADNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMY 182

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S   +   +F TP++V  L   + L  +    K        +YDP CG+G  L      
Sbjct: 183 ASNAGKSGGEFFTPQEVSKLLVEITLYNNAKPNK--------VYDPACGSGSLLLQYKKS 234

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285
           +                GQE+   T+ +    M +  +          +I  G TL    
Sbjct: 235 LKSDPKKG-------YFGQEINITTYNLARMNMFLHDVN-----YTRFDIAHGDTLINPS 282

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
                 + F   +SNPP+  KWE      +         RF     L   S   + F+MH
Sbjct: 283 ENHKELEPFDAIVSNPPYSTKWEG-----KDNALLINDERFNKAGVLAPTSKADLAFVMH 337

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L       G AAIV     ++ G A   E +IR++++E + ++ +++L  +LFF T
Sbjct: 338 SLSWLSEK----GSAAIVCFPGVMYRGGA---ERDIRKYMIEENFVDCVISLAPNLFFGT 390

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +IA  + +L   KT++       INA + +  + N    + +++ +    IL +Y  R+ 
Sbjct: 391 SIAVCILVLRKNKTDKNT---LFINANEEFIKVTN----KNMLSKENLENILKLYKDRKE 443

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                         + + +    +  + L  +     +       +  L++ 
Sbjct: 444 VPH---------LTKLVSIEEIAKNDYNLSVSSYVEAKDTREIIDIKALNKE 486


>gi|313113033|ref|ZP_07798671.1| type I restriction-modification system, M subunit [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624647|gb|EFQ07964.1| type I restriction-modification system, M subunit [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 848

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/592 (18%), Positives = 209/592 (35%), Gaps = 67/592 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC---ALEPTRSAVREKYLAFG 63
           +   LA+ IW++A  +    +  ++   IL F   + L               E      
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFMFYKFLSDKEVKWLKENDWTDEYLPDLT 61

Query: 64  GSNIDLESFVKVAGYSFYNTSEY--SLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117
             + +    V+     F        +  + GS    +++   + +FS     + K +F+ 
Sbjct: 62  EDDAETLDTVRKNVGYFIAYENLFSTWISKGSDFKADDVTVALQAFSRLIDPHHKKVFDG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I +        V+  IYE+LI  F +  
Sbjct: 122 VFATLQTGLSKLGESSGARTKAIRDLIYLIKDIPMDGK-QDYDVLGFIYEYLISNFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++        +        +YDPT G+G  L +     A  
Sbjct: 181 GKKAGEFYTPHEVSLLMSEIVAYHLKDREEIK------IYDPTSGSGSLLINIGQCAARY 234

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             +      +  + QEL+  T+ +    +++R +  D         + G TL +D     
Sbjct: 235 MGNGN---NIKYYAQELKENTYNLTRMNLVMRGILPDNIVT-----RNGDTLEEDWPYFE 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLF 338
                  +        +SNPP+ + W          +      RF   GL         F
Sbjct: 287 ENDPVNTYDPLFVDAVVSNPPYSQAW--------NPNDKENNPRFSDYGLAPKGKADYAF 338

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L+H    +       G   IVL    LF G     E  IR+ L++++ I+AI+ LP ++F
Sbjct: 339 LLHDLYHIRND----GIVTIVLPHGVLFRGGE---EGTIRKNLIDHNNIDAIIGLPANIF 391

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           F T I T + +L   K +     V +I+A+  +        K   +     ++I+D Y  
Sbjct: 392 FGTGIPTIIMVLRKNKKDS---DVLIIDASKGFEKD----GKNNKLRACDIKRIVDAYKE 444

Query: 459 RENG--KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           R     KF+R +           +  P  +             +       + L      
Sbjct: 445 RPEKIEKFARRVSRAEIIQNDYNLNIPRYVDSSEKAESWDIYASMFGGIPEAELQDLSAY 504

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
               P ++        E++ + ++ + +   L      +F  AF NAFG  D
Sbjct: 505 WTAFPHLKAALFSPDNEAYCRLNVANLKNAVLSHPDVVAFKTAFQNAFGDFD 556


>gi|48477150|ref|YP_022856.1| type I restriction-modification system methylation subunit
           [Picrophilus torridus DSM 9790]
 gi|48429798|gb|AAT42663.1| type I restriction-modification system methylation subunit
           [Picrophilus torridus DSM 9790]
          Length = 576

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 188/472 (39%), Gaps = 52/472 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-- 59
           T    + + L + + K A+ +        +   IL    L+R+    E   +    +   
Sbjct: 82  TNNKITRSDLESMLKKAADLIRTRVD---YK-YILILLFLKRISDKWEEEYNKALNELVD 137

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
                  A   +  ++     +   + +N     ++TL        L++ IA  + + K 
Sbjct: 138 NGLNESEAKEEAKDEIYHEFNLPEDALWNNIRKDVNTL-PEKLARALKT-IAEMNPDLKN 195

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           + ++ DF +     E + +L ++ + FS  EL  + V   ++ + YE ++R F  + ++ 
Sbjct: 196 VIDNIDFMTFTTNSENSQILRQLVELFSEQEL--NNVSPDILGDAYEWILRYFLPQKAKE 253

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +  TPR+V+ L   LL           P     +YDP CGT G L  A  +V D    
Sbjct: 254 -GEIYTPREVIKLLMNLL----------DPKPGDYIYDPACGTAGMLITAYYYVKDKYGK 302

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RF 292
                +   +GQE     +AV    + I  ++         N+  G TL       + +F
Sbjct: 303 DYANKLF-LYGQEANTTIYAVSKMNLYIHGID-------DTNLSSGDTLLHPKNIDENKF 354

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPP+ +    +      E+ N    R+  G    S     ++ H+    +     
Sbjct: 355 DIVVANPPWNQDGYDENVLKTGEYLN----RYKYGFTNSSSADWAWIQHMLYTSK----- 405

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             +  I+L +  LF       E  IR  +++ND +E+++ LP  +F+ T   + + IL+ 
Sbjct: 406 -SKVGIILDTGSLFRSGK---ELAIRSKIIDNDFVESVILLPEKIFYNTGSPSVIIILNK 461

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            K  + R K+  I+A+  +       +K   ++DD   +I + Y   +N   
Sbjct: 462 NK--KIRNKILFIDASKEFIKHPEI-RKLNTLSDDNINKITEAYKQFKNIDN 510


>gi|310659274|ref|YP_003936995.1| type I restriction modification system protein hsdmi [Clostridium
           sticklandii DSM 519]
 gi|308826052|emb|CBH22090.1| Type I restriction modification system protein HsdMI [Clostridium
           sticklandii]
          Length = 515

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/500 (22%), Positives = 189/500 (37%), Gaps = 69/500 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT      A L + IWK A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MT-SAAQRAELQSQIWKIANDVRGSVDGWDFKQYVLGTLFYRFISENFSKYIEAGDESIN 59

Query: 61  -----------AFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGST--NTRNNLESYIA 105
                            I  + +       F N ++   +  +L +      + +ES   
Sbjct: 60  YAELPDDIITSEIKDDAIKTKGYFIYPSQLFENIAKTANTNESLNTDLAAIFSAIESSAN 119

Query: 106 SFSD--NAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVM-SN 157
            +    + K +F   DF +T  RL     +K   L  + K  +G++          +  +
Sbjct: 120 GYPSELDIKGLFA--DFDTTSNRLGNTVKDKNSRLAAVIKGVAGLKFGEFEDNHIDLFGD 177

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE LI  + +   +   +F TP+ V +L   L +    ++ K        +YDP  G+G
Sbjct: 178 AYEFLISNYAANAGKSGGEFFTPQSVSNLIAKLAIHGQSSINK--------IYDPAAGSG 229

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A     +             +GQE+   T+ +    M +  +  D       +I 
Sbjct: 230 SLLLQAKKQFDEHIIEDG------FYGQEINHTTYNLARMNMFLHNINYDK-----FHIA 278

Query: 278 QGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334
            G+TL    +   + F   +SNPP+   W    D            RF P   L   S  
Sbjct: 279 LGNTLLDPHYGDDKPFDAIVSNPPYSVNWIGSDDPT-----LINDDRFAPAGVLAPKSKA 333

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H  + L       GRAAIV      + G A   E +IR++L++N+ +E + +L 
Sbjct: 334 DFAFVLHSLSYLSSK----GRAAIVCFPGIFYRGGA---EQKIRKYLIDNNFVETVTSLA 386

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINAT--DLWTSIRNEGKKRRIINDDQRRQI 452
            +LFF T+IA  + +LS  KT+    K Q I+A+  D +    N      ++ +    +I
Sbjct: 387 PNLFFGTSIAVNILVLSKHKTD---NKTQFIDASGADFYKKETN----NNVLTEKHIEEI 439

Query: 453 LDIYVSRENGKFSRMLDYRT 472
           + I+ ++E+           
Sbjct: 440 MTIFDTKEDIPHVAKCIDYE 459


>gi|312970037|ref|ZP_07784219.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70]
 gi|310337535|gb|EFQ02646.1| N-6 DNA Methylase family protein [Escherichia coli 1827-70]
          Length = 497

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 102/500 (20%), Positives = 176/500 (35%), Gaps = 81/500 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +    E  R  +       G ++             FY   E   S +     ++
Sbjct: 1   MFLKFISDKFEARRKKMIA----DGQADFLEMEVFYQQDNIFYLPEEARWSFIKQNAKQD 56

Query: 99  NLE-------SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
           ++        S I   +   K    D  FS       +   L  +      IE       
Sbjct: 57  DIAVRIDTALSTIEKRNPTLKGALPDNYFSRQNL---ETKKLASLIDTIDNIETLAHETD 113

Query: 152 ------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                 + ++  +YE+ + +F +   +G  +F TP+ VV L T +L              
Sbjct: 114 VETLSKEDLVGRVYEYFLGKFAATEGKGGGEFYTPKCVVTLLTEML-----------EPF 162

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
              +YDP CG+ G    ++  V            +  +GQEL   T+ +    + IR L 
Sbjct: 163 QGKIYDPCCGSAGMFVQSVKFVESH---QGKSRDIALYGQELTATTYKLAKMNLAIRGLS 219

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF- 324
           ++         +   T   D     +  Y L+NPPF             E +  +  RF 
Sbjct: 220 ANLGE------RPADTFFSDQHPDLKADYILANPPFNL------KDWRNEAELTKDPRFA 267

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           G  +P   + +  +++H+ +KL    +  G A  VL++  +      SGE EIR  ++EN
Sbjct: 268 GYRMPPTGNANYGWILHMLSKL----SANGTAGFVLANGSM--SSNTSGEGEIRAQMIEN 321

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-------RGKVQLINATDLWTSIRNE 437
           DLI+ ++ALP  LF+ T I   LW ++  K  +        +G+   I+A +L T I   
Sbjct: 322 DLIDCMIALPGQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRT 381

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
            K    +  +    I D Y +                  R      L        + L +
Sbjct: 382 TK---ELTAEDIATIADTYHA-----------------WRSTPEE-LAARIARGDSKLEK 420

Query: 498 LEADITWRKLSPLHQSFWLD 517
            E    + K++ L      D
Sbjct: 421 YEDQAGFCKVATLQDIKDND 440


>gi|297617310|ref|YP_003702469.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145147|gb|ADI01904.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 523

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/565 (17%), Positives = 205/565 (36%), Gaps = 78/565 (13%)

Query: 9   ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA----- 61
             +   +W  A+ L      K +++   +L    LR  +         + +K  A     
Sbjct: 6   NEIEKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADHKFSMAEKELAKKAKAGSRRV 65

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDF 118
            G ++      + +   + Y    Y L      N    +      I + +++ K +    
Sbjct: 66  IGKADYQARGVMYLPEQARY---SYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPK- 121

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               T  RL     L  + K FS I   P  V   V  N+YE+ +  F     +   +F 
Sbjct: 122 ----TYTRL-DNDTLIALLKTFSEI---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEFY 173

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L   ++                 + DP CG+GG    +   V +   +     
Sbjct: 174 TPTSLVKLIVEVI-----------EPYRGRILDPACGSGGMFVQSARFVQNHKKN--PSS 220

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLS 297
            +  +GQE   ET  +C   + +  L  D        I+Q +T  +++     RF + ++
Sbjct: 221 EISIYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCIGRFDFVMA 272

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF             + K  +  R+  GLP + + + +++    + L    N  GRA 
Sbjct: 273 NPPFNVDG-------VDKEKIKDDPRYPFGLPTVDNANYIWIQEFYSAL----NDTGRAG 321

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            V+++S      A   E EIR+ L+++ +++ ++ +  + F+   +   LW     K + 
Sbjct: 322 FVMANSA---SDARGSELEIRKKLIQDRVVDVMITIGPNFFYTVTLPCTLWFFDKGKRQT 378

Query: 418 RRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTF- 473
            RG KV  I+A +++  +    ++      +    I+ +Y     E    S  +    F 
Sbjct: 379 ERGNKVLFIDARNIYRQVDRAHREFTPEQIEFIANIVRLYRGEPVETVNGSDEMLEDKFP 438

Query: 474 --------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                   G  ++  +       + L+      +                + + L+ + +
Sbjct: 439 EGKYVDVPGLCKVATIEEIEAQGWSLNPGRYVGVAQ-------KEEEDYDFTERLQELNE 491

Query: 525 QIYPYGWAESFVKESIKSNEAKTLK 549
           ++       + ++E I+ N  K L+
Sbjct: 492 ELEQLNAEAAELEERIRENVGKLLE 516


>gi|304315082|ref|YP_003850229.1| type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588541|gb|ADL58916.1| predicted type I restriction-modification enzyme, subunit M
           [Methanothermobacter marburgensis str. Marburg]
          Length = 590

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 114/521 (21%), Positives = 204/521 (39%), Gaps = 59/521 (11%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           A +   +   A+ +        +   IL    ++++            E   A     + 
Sbjct: 93  ADIERILKGAADLIRTRVD---YK-FILVLLFMKQMSDKWMMEYQKAYE--DAIKEYGLS 146

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIFEDF 118
            E     A  S Y+  +     L   N R ++E+           +A  +   K + + F
Sbjct: 147 EEEARLEARNSAYHDLDIKEDYL-WDNIRKDVENLPIKFAGALKNLAELNPAFKDVVDAF 205

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           DF       E   +L ++ + FS  +L    V   ++ + YE ++R F    ++   +  
Sbjct: 206 DFVEFTQSQENREILRQLVELFSEKKLT--NVDPDILGDAYEWILRYFAPTKAKE-GEVY 262

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR+V+ L   +L           P    ++YDP   + G L  +  +V +     +   
Sbjct: 263 TPREVIRLLVEIL----------DPKPGESVYDPASASNGMLIISHKYVKETYGEAE--- 309

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
            L  +GQE+  +T A+    M I  ++         +I  G TL    F       RF  
Sbjct: 310 RLFLYGQEVNRKTMALGSMNMYIHDIK-------DHHIAHGDTLLYPKFKESDGIMRFDV 362

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+ +    +    + ++      RF  G          ++ H+    +      G
Sbjct: 363 VIANPPWNQDGYGEDTLKKGDYWRE---RFRYGFVNKQSADWAWIQHMIASAKDD----G 415

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           R  +V+ +  LF G     E  IR  +LE+DLIEA++ LP  LF+ T     + IL+  K
Sbjct: 416 RIGVVIDNGCLFRGGR---EKSIRSAVLEDDLIEAVILLPEKLFYNTGAPGAIIILNKDK 472

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
            EERRGKV  INA + +       +K  I++D    +IL+ Y   ++   FSR++D    
Sbjct: 473 DEERRGKVLFINAGEEYEKHPEV-RKLNILSDGNIERILEAYREFQDDDGFSRVVDLDEI 531

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                 +  PL   +   +  L  ++    W +LS + +  
Sbjct: 532 RENDYNLNVPL---YAFPEEELEDIDVAGEWMRLSEIEEEL 569


>gi|296132420|ref|YP_003639667.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           sp. JR]
 gi|296030998|gb|ADG81766.1| Site-specific DNA-methyltransferase (adenine-specific) [Thermincola
           potens JR]
          Length = 518

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 102/567 (17%), Positives = 205/567 (36%), Gaps = 79/567 (13%)

Query: 9   ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL------ 60
             +   +W  A+ L      K +++   +L    LR  +         + EK        
Sbjct: 6   NEIEKKLWNAADQLRANSKLKASEYSVPVLGLIFLRFADQRFSAAEKELVEKAKVSGSRR 65

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFED 117
           A G ++      + +   + Y    Y L      N    +      I + +++ K +   
Sbjct: 66  AIGKADYQARGVMYLPEQAKY---SYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPK 122

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                T  RL     L  + K FS I   P  V   V  N+YE+ +  F     +   +F
Sbjct: 123 -----TYTRL-DNDTLIALLKIFSEI---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEF 173

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +V L   ++                 + DP CG+GG    +   V +   +    
Sbjct: 174 YTPTSLVKLIVEVI-----------EPYKGRILDPACGSGGMFVQSARFVQNHKKN--PS 220

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCL 296
             +  +GQE   ET  +C   + +  L  D        I+Q +T  +++     RF + +
Sbjct: 221 SEISIYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCINRFDFVM 272

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF             + K  +  R+  GLP   + + +++    + L       GRA
Sbjct: 273 ANPPFNVDG-------VDKEKIKDDPRYPFGLPSNDNANYIWIQEFYSALNDK----GRA 321

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             V+++S      A   E EIR+ L+++ +++ ++A+  + F+   +   LW     K +
Sbjct: 322 GFVMANSA---SDARGSELEIRKKLIQDKVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQ 378

Query: 417 ERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTF 473
             RG KV  I+A +++  +    ++      +    I+ +Y     E    S  +    F
Sbjct: 379 TERGDKVLFIDARNIYRQVDRAHREFTPEQIEFIANIVRLYRGEPVETASGSEDMLKEHF 438

Query: 474 ---------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                    G  ++  +       + L+      +                +++ L+ + 
Sbjct: 439 PEGKYVDIPGLCKVTTIAEIEAQGWSLNPGRYVGVAQ-------KDEEDFDFMERLQELN 491

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKV 550
           +++       + ++E I+ N  + L V
Sbjct: 492 EELERLNAEAAELEERIRENVDRILSV 518


>gi|229129743|ref|ZP_04258710.1| Type I restriction-modification system, M subunit [Bacillus cereus
           BDRD-Cer4]
 gi|228653659|gb|EEL09530.1| Type I restriction-modification system, M subunit [Bacillus cereus
           BDRD-Cer4]
          Length = 512

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 98/469 (20%), Positives = 188/469 (40%), Gaps = 72/469 (15%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70
              +++   +L     + L   L            E+Y            +    +I  +
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDKLLEKVVEIADESLEEYDTQEKQTQLYRESLADEDIKND 60

Query: 71  SFVKVAGYSFYNTS-EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLE 128
               +     Y+   +Y  + L +   +N  +  +   +     +   +D F+     ++
Sbjct: 61  LIETLVDTLGYDIELDYLFNVLTNQAKQNTFQ--LNDLNKAFIDLSTKYDQFNGLFDDVD 118

Query: 129 -KAGLLY-----------KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            K+  L            ++ K  + +++        V+ + YE LI +F SE  + A +
Sbjct: 119 LKSKKLGADDQQRNITITEVLKKLNDVDVL--GHNGDVIGDAYEFLIGQFASEAGKKAGE 176

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V  +   +     +         + +++DPT G+G  + +  N++         
Sbjct: 177 FYTPHEVSVMMARIAAIGQED------KKLFSVFDPTMGSGSLMLNIQNYI-------NH 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY-- 294
           P  +  HGQEL   T+ +    +++  ++ +  R     ++ G TL+KD  T + + +  
Sbjct: 224 PDSVKYHGQELNTTTYNLAKMNLILHGVDKEDMR-----LRNGDTLNKDWPTDEPYTFDS 278

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPP+  KW  D   ++         R+G  L   S     FL+H    L+      G
Sbjct: 279 VLMNPPYSAKWSSDDTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKDS----G 329

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             AIVL    LF G A   E  IR+ LLE+  I+A++ +P +LFF T+I T + IL   +
Sbjct: 330 TMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGMPANLFFGTSIPTTVIILKKNR 386

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                  V  I+A+  +      GK +  +  +   +I++ Y  RE+ +
Sbjct: 387 ATR---DVLFIDASKEFIK----GKNQNKLFKEHIDKIVETYKKREDVE 428


>gi|182679587|ref|YP_001833733.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635470|gb|ACB96244.1| N-6 DNA methylase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 814

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 182/471 (38%), Gaps = 77/471 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + + + +W + + L G    + +   +L    ++ +                   
Sbjct: 1   MAVKKSEIYSSLWASCDALRGGMDASLYKDYVLVLLFVKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFDF 120
            +           G SF       +  L  + +    +   IA  ++  + K + +  DF
Sbjct: 45  YAGDPNGLIEVPKGGSF-----ADMVALKGNKDIGEQINMIIAKLAEANDLKGVIDVADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELH---PDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    +L         L  +   F+  EL      T  D ++ + YE+L+R F +E  + 
Sbjct: 100 NDP-DKLGSGKEMVDRLSSLVGIFNRPELDFRKNRTEGDDILGDAYEYLMRHFATESGKS 158

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP +V  +    +          +    +T+YDPTCG+G  L  A         H
Sbjct: 159 KGQFYTPAEVSRIMAKAIGMG------SARSAAQTIYDPTCGSGSLLLKA---------H 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
            + P  L  +GQE +  T A+    M++           +  I + +TLS   F      
Sbjct: 204 DEAPFDLTIYGQEKDVATRALAKMNMVLH-------DCPTAEIWRDNTLSAPHFVNNDGT 256

Query: 290 -KRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            K F + ++NPPF  K W    D  E   K     RF  G+P   +G   +L+H+   L+
Sbjct: 257 LKTFDFVVANPPFSDKAWGTGLDPAEDRFK-----RFEDGVPPAKNGDFAYLLHVVASLK 311

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ AI++    LF G A +G   IR  ++   +I+ I+ LP +LF+ T I   +
Sbjct: 312 ST----GKGAIIMPHGVLFRGNAEAG---IREKIIRKGIIKGIIGLPANLFYGTGIPACI 364

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            +L       R G + +I+A+  +     +G K R +      +I+D +  
Sbjct: 365 VVLDKENAHARTG-IFMIDASKGFV---KDGNKNR-LRAQDIHKIVDTFTK 410


>gi|225873158|ref|YP_002754617.1| putative type I restriction-modification system, M subunit
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793577|gb|ACO33667.1| putative type I restriction-modification system, M subunit
           [Acidobacterium capsulatum ATCC 51196]
          Length = 539

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 101/465 (21%), Positives = 175/465 (37%), Gaps = 44/465 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-K 58
           +E      +L   +W  A+      D K +++ + IL    LR         R+ + +  
Sbjct: 7   SEKDAGTTTLEKRLWDAADQFRANSDLKASEYSQPILGLIFLRFAGVRFAAQRARLEKSA 66

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
             +  GS +D  +     G   Y   +     L S     ++   +    +  + I +  
Sbjct: 67  ASSRRGSRVDDPAAYHAEG-VLYLPPDARFDHLLSLPEAADIGKAVN---EAMREIEKHN 122

Query: 119 D-FSSTIARLEK---AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           D  S  + R      + LL +I K  S I   P T+       IYE+ +  F     +G 
Sbjct: 123 DQLSGVLPRSYNRFTSKLLSEILKMISEI---PATLDYDAFGRIYEYFLGEFARTEGQGG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L T ++                 + DP CG+GG    +   VA+    H
Sbjct: 180 GEFYTPSAIVRLLTEVI-----------EPYHGRILDPACGSGGMFVSSARFVAEH--KH 226

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293
                L  HG E   ET  +C   + +  LE   +   + N     T   D      +F 
Sbjct: 227 NPSAELSIHGVEKTDETGRLCRMNLAVHGLEGTIKHGGNVN-----TYYDDPHAATGKFD 281

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + L+NPPF       +   +     G   RF  GLP++ + + L++    + L       
Sbjct: 282 FVLANPPFNVDAVDKERLKDA---VGPNRRFPFGLPRVDNANYLWIQLFYSALNDK---- 334

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+++S      A S E EIRR L+E   ++ +VA+  ++F+   +   LW     
Sbjct: 335 GRAGFVMANSA---SDARSSEQEIRRELIEAGAVDVMVAVGPNMFYTVTLPCTLWFFDRG 391

Query: 414 KTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           K    R   V  ++A  ++  I    ++           ++ +Y 
Sbjct: 392 KAATPRADTVLFLDARHIYRQIDRAHREWTPAQTGFLANLVRLYR 436


>gi|83815070|ref|YP_445227.1| putative type i restriction enzyme hindviip m protein [Salinibacter
           ruber DSM 13855]
 gi|83756464|gb|ABC44577.1| putative type i restriction enzyme hindviip m protein [Salinibacter
           ruber DSM 13855]
          Length = 522

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 108/540 (20%), Positives = 191/540 (35%), Gaps = 64/540 (11%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA----FGGS 65
            + + +W+ A DL G     ++   +LP   LR L    E  R  + EK       +   
Sbjct: 17  EIEDELWEAAVDLRGTIAPANYKNYVLPLLFLRYLSLRYEERREELEEKAEDPDSYYVEE 76

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           ++      +  G +F    E     L      ++++  +    +  +      D    + 
Sbjct: 77  DLREVDEYRQEG-AFLIPEEARWDYLVEHAQDDDIKVKVDRAMELLQQ--RYDDLEGVLP 133

Query: 126 RL-EKAGL----LYKICKNFS-GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            +   + L    L  +   FS  I          V+  +YE+ I  F         +F T
Sbjct: 134 PMYAGSNLTQENLANLINLFSRDIFTGQGKQQADVLGRVYEYFITNFADTEGSKGGEFFT 193

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR VV    A+L   D             ++DP CG+GG    A     D          
Sbjct: 194 PRSVVQALVAMLEPED----------GSKIFDPACGSGGMFVQAAEFTDD-------KES 236

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +GQE   +   +C   +L+  L+ D         + G +L  D   G +  Y ++NP
Sbjct: 237 LSFYGQESVDQNLRLCKMNLLMHDLQGDL--------ESGDSLLNDKHEGLKADYVIANP 288

Query: 300 PFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PF    W  D+   +         R     P  S+ + +++MH  + L      GG A  
Sbjct: 289 PFNIRSWGADEIPGDDPRLQVGDRRLQ---PTDSNANYMWMMHFLHHL----EDGGTAGY 341

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK---- 414
           V+++  +        E  +R+ L++   ++ IV LP  LFF T I   LW LS  +    
Sbjct: 342 VMANGSMTTSLTN--EEPVRKALVDERFVDCIVQLPDKLFFGTGIPACLWFLSRNRDGSN 399

Query: 415 -TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--------ENGKFS 465
              ER  ++  ++  D+          +R++ DD+  ++   Y +         E   FS
Sbjct: 400 GERERSDEILFLDGRDMGELPERA---KRVLTDDEIGRLETAYRNFRMPDEKVEEEPGFS 456

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            +           K+   L + F  D       E  +         Q    + L+  +++
Sbjct: 457 GVASLEEVRSNDYKLTPGLYVGFEDDDGDRVPFEVKMPQLVDELEDQFAESERLQSQIEK 516


>gi|21228842|ref|NP_634764.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907365|gb|AAM32436.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 508

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 95/512 (18%), Positives = 183/512 (35%), Gaps = 64/512 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REK 58
             G+       +W  A +L      K +++   +L    LR  E         +    E 
Sbjct: 1   MAGNNNETEKRLWDVANELRANSGLKASEYSVPVLGLIFLRYAEFKFAQAEQELKLELEN 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNA 111
             +      ++      A    Y   +   S L     S NT   +      I + +   
Sbjct: 61  NSSSRRRKNEISKVDYQAKGVLYLPEKARYSYLLDLPESENTGKAVNEAMEAIEAENPEL 120

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             I              +  LL  + K F      P  +       IYE+ + +F     
Sbjct: 121 TDILPKNY------TSFENDLLIALLKAF----KLPTDIQGDAFGKIYEYFLGKFAMAEG 170

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP  +V L   ++                 + DP CG+GG    + + V +  
Sbjct: 171 QKGGEFFTPISLVKLIVEII-----------EPYHGKILDPACGSGGMFVQSAHFVENH- 218

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-K 290
            H K    +  +GQE   +T  +C   + +  L  D        I++G+T  +++     
Sbjct: 219 -HRKASSEISVYGQEKVADTVRLCKMNLAVHGLSGD--------IKEGNTYYENIHNSVD 269

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F + ++NPPF  K    +     +       R   G P   + + L++ H  + L    
Sbjct: 270 AFDFVMANPPFNVKKVDFEKVKGDK-------RLPLGTPSTDNANYLWIQHFWSALNEK- 321

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              GRA  V+++S      A   E+EIR+ L+E++ ++ +V++ ++ F+   +   LW L
Sbjct: 322 ---GRAGFVMANSA---SDARGTEAEIRKQLIESNAVDIMVSIGSNFFYTVTLPCALWFL 375

Query: 411 SNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
              K   +R+ K+  I+A +++T +       R    +Q  +I  I  S    + S   +
Sbjct: 376 DKSKASTDRKDKILFIDAREIFTQVDRA---HREFTAEQIEKIAGIVRSYREEEGSEPYE 432

Query: 470 YRTFGYRRI-KVLRPLRMSFILDKTGLARLEA 500
               G  ++  +       + L+      +  
Sbjct: 433 DV-KGLCKVATLDEVREQGYSLNPGRYVGVAE 463


>gi|313669544|ref|YP_004049969.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156741|gb|ADR35416.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 529

 Score =  262 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/487 (18%), Positives = 182/487 (37%), Gaps = 55/487 (11%)

Query: 6   GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +  +L   +W  A++L    +   +++ + +L    LR  E      + A+ E      
Sbjct: 4   KNIEALEKRLWSAADELRANSNLTASEYSRPVLGLIFLRYAEYRYLIAKEAI-ESTQTSR 62

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKAIFE 116
               D+++ ++  G   Y         L       +    +      + + ++  +    
Sbjct: 63  RRGTDIKTAIQAEGAM-YVPDVALFDNLLKLPDGADIGRAINDAMKALEAENEAIRDTLP 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                          +L  + KNF+GI      +   V   IYE+ +  F     +G  +
Sbjct: 122 K------TYTKFDNAILITLLKNFAGIRF---DIGTDVFGRIYEYFLTEFAKSEGQGGGE 172

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V L T ++                 ++DP CG+GG    + + VA+   +   
Sbjct: 173 FFTPAHLVRLITEII-----------EPYHGKVFDPACGSGGMFVSSASFVAEHNRNASS 221

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYC 295
                  GQE   +T  +    + +  L+ D        I++G++  +D+     +F + 
Sbjct: 222 EL--SIFGQEKTGDTVRIAKLNLAVHGLQGD--------IKEGNSYYEDIHQCAGQFDFV 271

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPF          ++KE    +  RF  G+P + +G+ L++      L    N  GR
Sbjct: 272 MANPPFNVNN------IQKERIADDKARFPFGMPNVDNGNYLWIQLFYASL----NDTGR 321

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  V+++S      A   E EIRR L  +  ++ +VA+ ++ F+   +   LW L   K 
Sbjct: 322 AGFVMANSA---ADARGSEMEIRRQLTLSGGVDVMVAISSNFFYTVTLPCTLWFLDKGKP 378

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           + R+ KV  I+A  ++  +    +       +    I+ +Y         +         
Sbjct: 379 QSRKDKVLFIDARHIFKQVTRSVRDYSSEQLNFIADIVRLYRGEATDDTYKTHHEDERND 438

Query: 476 RRIKVLR 482
               V R
Sbjct: 439 GEYTVER 445


>gi|121534614|ref|ZP_01666436.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
 gi|121306866|gb|EAX47786.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
          Length = 518

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/563 (17%), Positives = 206/563 (36%), Gaps = 75/563 (13%)

Query: 9   ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             +   +W  A+ L      K +++   +L    LR  +         + EK  + G   
Sbjct: 6   NEIEKKLWTAADQLRANSKLKASEYSVPVLGLIFLRFADQRFSMAEKELAEKARSAGSRR 65

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKAIFEDFD 119
              ++  +  G   Y   +   S L       N    +      I + +++ K +     
Sbjct: 66  AIGKADYQARG-VMYLPEQARYSYLLKLPEGENIGKAVNEAMKAIEAENEDLKDVLPK-- 122

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
              T  RL     L  + K FS +   P  V   V  N+YE+ +  F     +   +F T
Sbjct: 123 ---TYTRL-DNDTLIALLKIFSEV---PMDVEGDVFGNVYEYFLGEFARSEGQRGGEFYT 175

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V L   ++                 + DP CG+GG    +   V +   +      
Sbjct: 176 PTSLVKLIVEVI-----------EPYQGRILDPACGSGGMFVQSARFVQNHKKN--PSSE 222

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSN 298
           +  +GQE   ET  +C   + +  L  D        I+Q +T  +++     RF + ++N
Sbjct: 223 ISIYGQEKVAETVRLCKMNLAVHGLSGD--------IRQANTYYENVHNCLNRFDFVMAN 274

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF             + K  +  R+  GLP I + + +++    + L       GRA  
Sbjct: 275 PPFNVDG-------VDKEKIKDDPRYPFGLPTIDNANYIWIQEFYSALNDK----GRAGF 323

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+++S      A   E EIR+ L+++ +++ ++A+  + F+   +   LW     K +  
Sbjct: 324 VMANSA---SDARGSELEIRKKLIQDRVVDVMIAIGPNFFYTVTLPCTLWFFDKGKRQTE 380

Query: 419 RG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR--ENGKFSRMLDYRTF-- 473
           RG KV  I+A +++  +    ++      +    I+ +Y  +  E    S  +    F  
Sbjct: 381 RGDKVLFIDARNIYRQVDRAHREFTPEQIEFIANIVRLYRGQPVETFNGSEEMLKEKFPE 440

Query: 474 -------GYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                  G  ++  +       + L+      +                +++ L+ + ++
Sbjct: 441 GKYTDIPGLCKVATIEDIEAQGWSLNPGRYVGVAQ-------KDEEDFDFMERLQELNEE 493

Query: 526 IYPYGWAESFVKESIKSNEAKTL 548
           +       + ++E I+ N  + L
Sbjct: 494 LERLNAEAAELEERIRENVRQLL 516


>gi|73670137|ref|YP_306152.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72397299|gb|AAZ71572.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 508

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/550 (18%), Positives = 203/550 (36%), Gaps = 61/550 (11%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
             G+     N +W  A +L      K +++   +L    LR  E         ++ +   
Sbjct: 1   MAGNNNETENRLWDVANELRANSGLKASEYSVPVLGLIFLRYAEFKFAKAEKELKLELEN 60

Query: 62  FGGSNIDLESFVKV---AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
              S    +   K+   A    Y   +   S L +     N+   +    +  +A  E+ 
Sbjct: 61  ESSSRRRKKEISKIDFQAKGVLYLPKKARYSYLLNLPESENIGKAVNDAMEAIEA--ENP 118

Query: 119 DFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           + + T+ +     +  LL  + K F      P  +       IYE+ + +F     +   
Sbjct: 119 ELTDTLPKNYTSFENDLLVALLKAF----KLPPEIKGDAFGKIYEYFLGKFAMAEGQKGG 174

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V L   ++                 + DP CG+GG    + + V     H +
Sbjct: 175 EFFTPTSLVRLIVEII-----------EPYHGRILDPACGSGGMFVQSAHFVE--NQHKE 221

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHY 294
               +  +GQE   +T  +C   + +  L  D        I++G+T  +D+      F +
Sbjct: 222 ASSEISIYGQEKVADTVRLCKMNLAVHGLSGD--------IKEGNTYYEDIHNSVDAFDF 273

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPF  K    +     +       R   G P   + + L++ H  + L       G
Sbjct: 274 VMANPPFNVKKVDFEKVKGDK-------RVPLGTPSTDNANYLWIQHFWSTLNEK----G 322

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RA  V+++S      A   E+EIR+ L+E + ++ +V++ ++ F+   +   LW L   K
Sbjct: 323 RAGFVMANSA---SDARGTEAEIRKQLIEGNAVDVMVSIGSNFFYTVTLPCTLWFLDKGK 379

Query: 415 TE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
               R+ K+  I+A +++T +       R    +Q  ++  I  S    + S   +    
Sbjct: 380 ARTSRKDKILFIDAREIFTQVDRA---HREFTGEQIEKLAGIVRSYREKEGSEPYEDV-K 435

Query: 474 GYRRI-KVLRPLRMSFILDKTGL----ARLEADITW-RKLSPLHQSFWLDILKPMMQQIY 527
           G  ++  +       + L+          +E D  +  +L  L++      L+    +  
Sbjct: 436 GLCKVATLDEVREQGYSLNPGRYVGVAEAVEEDFDFTERLQELNEELEGLNLEARELEEQ 495

Query: 528 PYGWAESFVK 537
                E  V+
Sbjct: 496 ISENIEKLVR 505


>gi|325997725|gb|ADZ49933.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2017]
          Length = 495

 Score =  261 bits (666), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 103/447 (23%), Positives = 170/447 (38%), Gaps = 60/447 (13%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----- 56
              +     L N IWK A +L G     DF + +L     R +   +    +        
Sbjct: 64  NHASLERNELHNTIWKVANELRGSVDGWDFKQYVLGVLFYRYISENIARYHNEYMRNNNF 123

Query: 57  -----------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                      E+      S I+ + F       F N  + + +      T  N+ + I 
Sbjct: 124 DPSFDYASLSDEEAEIERKSTIEEKGFFIPPSALFCNVLKNAPNNEDLNVTLQNIFTEIE 183

Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD-RVM 155
             S      +N K +F D D +S     +   +   L KI +   G++L         V 
Sbjct: 184 KSSLGTPSEENVKGLFADLDVNSNKLGSSHQNRVEKLTKILQAIGGMQLGDYQQSGIDVF 243

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE+L+  + S   +   ++ TP++V  L   + L   + + K        +YDP CG
Sbjct: 244 GDAYEYLMAMYASNAGKSGGEYFTPQEVSELLAKIALHNQENVNK--------VYDPCCG 295

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L      + D              GQE+   T+ +C   M +  +          +
Sbjct: 296 SGSLLLQFSKVLGDKNVLKG------YFGQEINLTTYNLCHINMFLHDIN-----YSKFH 344

Query: 276 IQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G TL        + F   +SNPP+  KW  D + +          RF     L   +
Sbjct: 345 IAHGDTLLDPKHEDDEPFDAIVSNPPYSTKWVGDNNPLLMN-----DERFSKAGALAPKN 399

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F MH+ + L       G AAIV     L+ G A   E +IR +L++ + I+ ++A
Sbjct: 400 AADLAFTMHMLSYLSNQ----GAAAIVEFPGVLYRGGA---EKKIREYLVKENFIDCVIA 452

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERR 419
           LP +LFF TNIAT + +L   K ++  
Sbjct: 453 LPENLFFGTNIATCILVLKRNKKDDTT 479


>gi|298528585|ref|ZP_07015989.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512237|gb|EFI36139.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 516

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 95/468 (20%), Positives = 178/468 (38%), Gaps = 52/468 (11%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              +   +   +W  A++L      K +++   +L    LR  +        A  ++   
Sbjct: 1   MNRNGNQVEARLWAAADELRANSKLKPSEYSVPVLGLVFLRYADHKF----KAAAKELEC 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            GG    +      A    Y   +   S L      +NL + I       +A  E+ D  
Sbjct: 57  SGGGRRKIGPADYHARGVVYLPEKARFSYLIQLPEGSNLGAAINDAMRAIEA--ENTDLR 114

Query: 122 STIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             + +     +  LL ++ K  + +   P  +       IYE+ +  F     +   +F 
Sbjct: 115 EVLPKTYNRFENYLLKELLKTMNSV---PMDIEGDAFGKIYEYFLGNFARAEGQKGGEFF 171

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V L   ++                 +YDP CG+GG    + + V +   +     
Sbjct: 172 TPTAIVKLIVGII-----------EPYHGRIYDPACGSGGMFVQSAHFVEEHRKNPGSEL 220

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLS 297
               +GQE   ET  +    + +  L  D        I+QG+   +DL   K +F Y ++
Sbjct: 221 --SIYGQEKVAETVRLGKMNLAVHGLGGD--------IRQGNAYYEDLHNSKAKFEYVMA 270

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF             + +  +  RF  GLPK  + + L++    + L       GRA 
Sbjct: 271 NPPFNVD-------RVDKDRLKDDPRFPFGLPKPDNANFLWIQMFYSALNDK----GRAG 319

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTE 416
            V+++S      A   E +IR+ L+E++ ++ +VA+ ++ F+   +   LW L   +K  
Sbjct: 320 FVMANSA---SDARGSELDIRKQLIESNSVDVMVAVGSNFFYTVTLPCTLWFLDRGKKNT 376

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           +R  KV  I+A  ++  I    +       +    I  +Y + E  + 
Sbjct: 377 DRADKVLFIDARHIYRQIDRAHRDWTPAQIEFLANIARLYRN-EEPEN 423


>gi|158522247|ref|YP_001530117.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511073|gb|ABW68040.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 528

 Score =  260 bits (664), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 105/577 (18%), Positives = 190/577 (32%), Gaps = 82/577 (14%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              +  +    +W  A+ L      K +++   +L    LR  +        A  ++   
Sbjct: 1   MNHNGNNTEARLWDAADQLRANSKLKSSEYSVPVLGLVFLRYADHKF----QAAAKELEG 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAKAI 114
            GG           A    Y       S L       N+ + I        + + + K +
Sbjct: 57  KGGGRRKTGPADYQAKGVLYLPKAARFSALIQMPEGANIGTAINNAMRAIEAENPDLKDV 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                         +  LL ++ K  + +   P  +       IYE+ +  F     +  
Sbjct: 117 LPKTYNR------FENTLLKELLKTMNSV---PMDIEGDAFGRIYEYFLGNFARAEGQKG 167

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L   ++                 +YDP CG+GG    +   VA+   + 
Sbjct: 168 GEFFTPTAIVRLIVGII-----------EPFHGRIYDPACGSGGMFVQSARFVAEHKKNP 216

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293
                   +GQE   ET  +    + +  L  D        I++G+   +DL     +F 
Sbjct: 217 GAEL--SVYGQEKVAETVRLGKMNLAVHGLSGD--------IREGNAYYEDLHRAVNKFD 266

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF             + +  +  RF  GLP+  + + L++    + L      G
Sbjct: 267 FVMANPPFNVD-------RVDKDRLKDDPRFPFGLPRTDNANYLWIQIFYSALNKTGRSG 319

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
              A            A   E +IRR L+E   ++ +VA+ ++ F+   +   LW     
Sbjct: 320 FVMAN-------SASDARGSELDIRRQLIEAQAVDVMVAVGSNFFYTVTLPCTLWFFDKG 372

Query: 414 KTE------------ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV- 457
           K               R   V  I+A  L+   R   +  R     Q      I  +Y  
Sbjct: 373 KRNAVPGSAAPQCGISRADTVLFIDARHLY---RQIDRAHRDWTPAQIEFLANIARLYRG 429

Query: 458 -SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF-- 514
              EN   S  L    FG +   V  P            A+  +    R +    ++   
Sbjct: 430 EQTENLHDSADLLAEHFGKKSKYVDVPGLCKVATIAEIEAQGWSLNPGRYVGVAARTEDD 489

Query: 515 --WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
             + + L+ M +++         ++E I  N AK L+
Sbjct: 490 FDFKERLEEMNEELEILNAEARELEERIAENVAKLLE 526


>gi|108797003|ref|YP_637200.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119866087|ref|YP_936039.1| N-6 DNA methylase [Mycobacterium sp. KMS]
 gi|108767422|gb|ABG06144.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119692176|gb|ABL89249.1| N-6 DNA methylase [Mycobacterium sp. KMS]
          Length = 495

 Score =  259 bits (663), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/465 (19%), Positives = 165/465 (35%), Gaps = 59/465 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T   A + N +W  A++L          +   +L    L   E   E  R  V  K  A
Sbjct: 22  KTTDLAKVRNTLWAAADELRANSKLTPVQYRNPVLGLVFLAYAENRFEAVRGEVESKASA 81

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYI---ASFSDNAKAI 114
              +          A    Y   E  LS L       +    ++  I    + +   K I
Sbjct: 82  RNPATPAD----YKAKSVLYVPEESRLSYLNDLPEGDDIGKAVDDAIKAIEAANPELKDI 137

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                      +LE++  L ++ + F+     P  +       IYE  +  F ++  +G 
Sbjct: 138 LPR-----GYQKLERS-TLIELLRLFA---PLPTQLEGDAFGFIYEDFLSNFAAQEGKGG 188

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP  +V L   +L                 ++DP CG+GG        V       
Sbjct: 189 GEYFTPYSIVRLIVEIL-----------EPFHGRVFDPACGSGGMFVQCAKFVERHNESA 237

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293
                    G E   +T  +    + +  L  D        I+Q ++  +D       F 
Sbjct: 238 NRKL--SIFGAEKTDDTVPLAKMNLALHGLSGD--------IRQANSYYEDPHKAVGAFD 287

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           Y ++NPPF            K+ +     RF  G+PK  + + L++      L       
Sbjct: 288 YVMANPPFNVD-------KVKKGQLAGDKRFPFGIPKPDNANYLWIQQFYAALGPK---- 336

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+++S    G AG  E EIR+ ++E+ +++ +VA+ ++ F+   +   LW +   
Sbjct: 337 GRAGFVMANSA---GDAGHSEKEIRKQIIESGVVDVMVAISSNFFYTVTLPVTLWFMDKA 393

Query: 414 KTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           K   +R   V  ++A   +  I    +       +    ++ +Y 
Sbjct: 394 KAGTQREDAVLFLDARHTYRQIDRAHRDFTAEQIEFLANVVRLYR 438


>gi|325108024|ref|YP_004269092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
 gi|324968292|gb|ADY59070.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Planctomyces brasiliensis DSM 5305]
          Length = 524

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/465 (20%), Positives = 180/465 (38%), Gaps = 59/465 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              + +     +W+ A++     D K +++   +L    LR  +       +   +K   
Sbjct: 1   MANNHSDTEKRLWEAADEFRANSDLKSSEYSVPVLGLIFLRYADYRF----TQAEKKLEG 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESY---IASFSDNAKAI 114
            G     +      A    Y  SE   S L +     N   ++      I + ++  K +
Sbjct: 57  QGSGRRQIGKADYQAEGVMYLPSEARFSHLLALPEGENIGKHINEAMKAIEAENEVLKGV 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   T  R+E   +L  + KNFS IE+  +         IYE+ +  F     +  
Sbjct: 117 LPK-----TFNRIE-NTILVSLLKNFSQIEMDDEG---DKFGKIYEYFLGNFARAEGQKG 167

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L   ++                 ++DP+CG+GG    + + +       
Sbjct: 168 GEFFTPTSLVKLIVEII-----------EPYHGRIFDPSCGSGGMFAQSADFIKAHNK-- 214

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293
           K    +  +GQE   ET  +C+  M +  L  D        I+ G++  +D+   + RF 
Sbjct: 215 KPADEISCYGQERVAETRQLCMMNMAVHALSGD--------IRLGNSYYEDMHESQGRFD 266

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF             + +  +  RF  G+P+  + + L++    + L    N  
Sbjct: 267 FVMANPPFNVD-------KVDKDRLKDDPRFPFGMPRNDNANYLWIELFYSAL----NET 315

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+++S      A   E EIR+ LL +  ++ +VA+  + F+   +   LW     
Sbjct: 316 GRAGFVMANSA---ADARQSEQEIRKKLLRSHAVDVMVAIGPNFFYTVTLPCTLWFFDKG 372

Query: 414 KTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           K   +R+ KV  I+A   +  +    +K      +    I+ +Y 
Sbjct: 373 KQNTDRKDKVLFIDARHTFRQVDRAHRKFSPKQIEFLANIVRLYR 417


>gi|332983357|ref|YP_004464798.1| N-6 DNA methylase [Mahella australiensis 50-1 BON]
 gi|332701035|gb|AEE97976.1| N-6 DNA methylase [Mahella australiensis 50-1 BON]
          Length = 894

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 184/482 (38%), Gaps = 66/482 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L   + ++   L G  +   +   +L     + +       +     ++    G++
Sbjct: 2   KKSELYPLLLESCNKLRGGVEPARYKDYVLVLLFFKYVSDRY---KGQPFAEFKISDGAS 58

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFSSTI 124
            D    +K  G S               +    ++  I  F ++   +    D  F++  
Sbjct: 59  FDD--LIKAKGKS---------------DVGERVDKIIQKFLEDNKLQGALPDVSFNNP- 100

Query: 125 ARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             L     L      +   F    +         D ++ + YE+ + +F  E  +    F
Sbjct: 101 DELGYGKELVDKVSGLIAVFQNPAIDFKNNRASGDDIIGDAYEYFMMKFAQESGKSKGQF 160

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  +   L+        K+ P    TLYDP  G+G  L  A +   +        
Sbjct: 161 YTPSEVSRIIARLIGIG---NIKQMPTKKWTLYDPAAGSGSLLIRAAD---EAPVDENGD 214

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRF 292
            I+   GQE +  T  +    +++           +  I++G+TL    FT      K+F
Sbjct: 215 SIVTIFGQEKDIATAGLARMNLILH-------HKGTGEIKKGNTLVSPAFTDDFGELKKF 267

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
            + + NPPF  K   D      +    +  RF G G+P   +G   + +H+   L    +
Sbjct: 268 DFIVMNPPFSDKSWSD----GIKATEDKYKRFDGYGIPPEKNGDYAWFLHVLKSL----D 319

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A I++    LF G     E  IR  +L    I+ I++LP +LF+ T I   + I+ 
Sbjct: 320 DNGKAGIIMPHGILFRGN---SEETIRIAILRKRYIKGIISLPANLFYGTGIPACIVIID 376

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
                + R  + LI+A+  +   + +G K R + +    +I+  ++++E  + +SR + Y
Sbjct: 377 KE-NADTRDGIFLIDASRGF---KKDGNKNR-LREQDIEKIVRTFINQEEIEGYSRFVKY 431

Query: 471 RT 472
             
Sbjct: 432 SD 433


>gi|238018337|ref|ZP_04598763.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748]
 gi|237864808|gb|EEP66098.1| hypothetical protein VEIDISOL_00162 [Veillonella dispar ATCC 17748]
          Length = 914

 Score =  257 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 187/511 (36%), Gaps = 98/511 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IW++A  +    +  ++   IL F   + L            ++      + 
Sbjct: 2   NKQQLAAKIWESANKMRSKIEANEYKDYILGFMFYKFLS----------EKEVKYLKSTG 51

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--------NAKAI---F 115
              E   +V      N S++ ++T    N      +Y   FS         + + +    
Sbjct: 52  WTDEYLPEV------NESDHEVATSVKKNIG-YFIAYENLFSTWINKGRDFSVQDVTVAL 104

Query: 116 EDFD----------FSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDR 153
             F+          F      L             ++  + ++      I +        
Sbjct: 105 NAFNRNINSSHKSVFEGIFETLQTGLSKLGETDASRSKSISELIHLIKDIPMDGK-QDYD 163

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  +YE+LI +F +   + A +F TP +V  L + ++ +      K        +YDPT
Sbjct: 164 VLGFVYEYLIEKFAANAGKKAGEFYTPHEVSLLMSDIVAEHLKDRNKIE------IYDPT 217

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +    V+   +          + QEL+  T+ +    +++R +E+D      
Sbjct: 218 SGSGSLMINIGQSVSKYVTGENKIK---YYAQELKRNTYNLTRMNLVMRGIEADNIVT-- 272

Query: 274 KNIQQGSTLSKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              + G TL +D            +        +SNPP+ + W+      +  +      
Sbjct: 273 ---RNGDTLEEDWPYFDENDPLGTYQPLYVDAVISNPPYSQPWDPSDKETDSRYAE---- 325

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
               GL         FL+H    +       G   IVL    LF G     E  IR+ L+
Sbjct: 326 ---YGLAPKGKADYAFLLHDLYHIRPD----GIMNIVLPHGVLFRGNE---EGMIRKNLI 375

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E + I+AI+ LP ++F+ T+I T + +L   K +     V  I+A+  +        K  
Sbjct: 376 EKNKIDAIIGLPANIFYGTSIPTIIMVL---KQKRENTDVLFIDASKGFIKD----GKNN 428

Query: 443 IINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
            +     ++I+D  ++REN  KFSR++    
Sbjct: 429 KLRSSDIKKIVDTVINRENIDKFSRVVTRDE 459


>gi|332288722|ref|YP_004419574.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330431618|gb|AEC16677.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 483

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 152/436 (34%), Gaps = 77/436 (17%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-------------------TNTR 97
           E+Y A     ++       A   F+  ++     L +                    N  
Sbjct: 18  EEYQAQLEEEMEERD-NYTAENIFWVPAQARWENLKNVVILRKGSELPWGGTFRGVANLI 76

Query: 98  NNLESYIASFSDNAKAIFED---FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--- 151
           ++  + I   +   K I +    FD             L  +   FS    +  T     
Sbjct: 77  DDAFTAIEKENPKLKGIIQRISGFDVEEQ--------TLIGLVNLFSDTHFNQPTYNGEP 128

Query: 152 -----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++ ++YE+ +  F     +    + TP+ +V L   +L               
Sbjct: 129 ISLAAKDILGHVYEYFLGEFALAEGKKGGQYFTPKSIVTLIVEMLQPYQG---------- 178

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +E 
Sbjct: 179 -RIYDPAMGSGGFFVQTEKFIEAHQGNIN---QVSIYGQESNPTTWKLAAMNMAIRGIEF 234

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D  +  +       +  +     K+  + ++NPPF  K               +  R+  
Sbjct: 235 DFGKSNA------DSFKQPQHIDKKMDFVMANPPFNMK-------DWWNESLQDDPRWQY 281

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P   + +  +L H+   L       GR  ++L++  +       GE EIR+ LLE DL
Sbjct: 282 GIPPEGNANFAWLQHMLYHLSP----NGRMGLLLANGSM--SSQTGGEGEIRQRLLEADL 335

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +E +VALP  LF  T I   +W L+  K   +  +V  I+A ++           R    
Sbjct: 336 VECMVALPGQLFTNTQIPACIWFLNKNKPRAK--EVLFIDAREIGYMKDRV---LRDFTT 390

Query: 447 DQRRQILDIYVSRENG 462
           +   +I D Y + +  
Sbjct: 391 EDIAKIADTYHAWQQN 406


>gi|126661487|ref|ZP_01732540.1| type I restriction-modification system specificity subunit
           [Cyanothece sp. CCY0110]
 gi|126617230|gb|EAZ88046.1| type I restriction-modification system specificity subunit
           [Cyanothece sp. CCY0110]
          Length = 515

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/465 (20%), Positives = 188/465 (40%), Gaps = 56/465 (12%)

Query: 4   FTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              +   L   +W  A++L  +   K +++   +L    LR  +     T++   ++   
Sbjct: 1   MPANTTDLEKRLWDAADELRANSRLKSSEYSVPVLGLIFLRYADYKF--TKAE--QELKQ 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESY---IASFSDNAKAI 114
                 ++      A    Y       S L +     +T   +      I S ++    I
Sbjct: 57  KSSRRREVSKADYQAKGVMYLPDVARFSYLVNLPESEDTGKAINEAMKGIESENEELSNI 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               +++       +  LL ++ K+F+ I++  D +       IYE+ + +F     +  
Sbjct: 117 LPQ-NYNRF-----ENSLLVELLKSFNKIDIDTD-LEGDAFGKIYEYFLGKFAMSEGQKG 169

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  VV L   +L                 +YDP CG+GG    + + V+    + 
Sbjct: 170 GEFFTPTSVVKLIVEIL-----------EPYHGRIYDPACGSGGMFVQSASFVSKHRKN- 217

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293
                +  +GQE   ET  +C   + +  L  D        I++G+T  +D+     +F 
Sbjct: 218 -PNAEISIYGQERVTETVRLCKMNLAVHGLSGD--------IKEGNTYYEDIHKSINKFD 268

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPPF          V+KE   G+L     G+P+  + + L++    + L    N  
Sbjct: 269 FVMANPPFNVD------KVDKEKMKGDLRVDEFGMPRADNANYLWIHFFYSAL----NDN 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+++S      A S E EIR+ L+E  +++ ++A+ ++ F+   +   LW L   
Sbjct: 319 GRAGFVMANSA---SDARSSELEIRQKLIETGVVDVMIAVGSNFFYTVTLPCTLWFLDKG 375

Query: 414 KTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           KT+  R  KV  I+A  ++  I    ++      +    I+ +Y 
Sbjct: 376 KTDTTRKNKVLFIDARHIYQQIDRAHREFTPEQIEFISNIVRLYR 420


>gi|260655883|ref|ZP_05861352.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella
           anthropi E3_33 E1]
 gi|260629499|gb|EEX47693.1| site-specific DNA-methyltransferase, HsdM subunit [Jonquetella
           anthropi E3_33 E1]
          Length = 854

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/496 (18%), Positives = 181/496 (36%), Gaps = 65/496 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLAF 62
           +   LA+ IW++A  +    +  ++   IL F   + L       L+ T  A  ++Y+  
Sbjct: 2   NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLSDKEVKYLKDT--AWTDEYIPS 59

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSL-------STLGSTNTRNNLESYIASFSDNAKAIF 115
              +             ++   E              + +    L ++    + + K +F
Sbjct: 60  LTEDDAETVGTVQKDIGYFIAYENLFSTWIAKGKDFSADDVTTALPAFNRLINKSHKKVF 119

Query: 116 EDF--DFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
                   + +++L      +   +  +      I +        V+  IYE+LI  F +
Sbjct: 120 SGIFKTLETGLSKLGETSGARTKAIRDLLYLIKDIPMDGK-QDYDVLGFIYEYLISNFAA 178

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +F TP +V  L + ++        +        +YDPT G+G  L    N   
Sbjct: 179 NAGKKAGEFYTPHEVSLLMSEIVAHHLKDRQEIK------IYDPTSGSGSLLI---NIGK 229

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-- 286
               +      ++ + QEL+  T+ +    +++R +  D         +   TL  D   
Sbjct: 230 CAARYIGSEDNILYYAQELKENTYNLTRMNLVMRGIIPDNITT-----RNADTLEDDWPY 284

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                    +        +SNPP+ + W       +  + N        G+         
Sbjct: 285 FDDDDPTRTYNPLYVDAVVSNPPYSQAWNPVGKENDPRYSN-------FGIAPKGKADYA 337

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    ++      G   IVL    LF G     E  IRR L+E + I+A++ LP ++
Sbjct: 338 FLLHDLFHVKPD----GIMTIVLPHGVLFRGGE---EGTIRRNLIEGNYIDAVIGLPANI 390

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           FF T I T + +L           V +++A+  +        K  ++     ++I+D+  
Sbjct: 391 FFGTGIPTIIMVLKQPHGRADYTDVLIVDASKGFEK----AGKNNVLRACDIKKIVDVVT 446

Query: 458 SREN-GKFSRMLDYRT 472
           SR +  KFSR++    
Sbjct: 447 SRTSVPKFSRVVSLEE 462


>gi|75909704|ref|YP_324000.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
 gi|75703429|gb|ABA23105.1| N-6 DNA methylase [Anabaena variabilis ATCC 29413]
          Length = 694

 Score =  255 bits (651), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 111/579 (19%), Positives = 216/579 (37%), Gaps = 73/579 (12%)

Query: 8   AASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              L   +W++A+ L    D K +++   ++    L+  +       + ++++Y A  G+
Sbjct: 6   LKQLEANLWQSADTLRANSDLKSSEYSTPVMGLIFLKFADNKYRQYAAEIQQEYEALKGT 65

Query: 66  N-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKAIFED 117
                 + + +    FY       + L       +    +++    I S+    K     
Sbjct: 66  RREKAIAEIAIEKCGFYLPDHARYNYLLNLPEEEDIAKAIKAAMVSIESYKPELKDTLPQ 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            ++          G+  ++ KNFS I   P+     +   IYE+ +  F     +G  +F
Sbjct: 126 DEYFRLTRT--DKGIPKQLLKNFSNI---PENATGDMFGQIYEYFLGNFALSEGQGGGEF 180

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--HHK 235
            TPR VV L   ++                T++DP CG+GG    +   + +     +  
Sbjct: 181 FTPRSVVRLMVEIIEPHQG-----------TVFDPACGSGGMFVQSAQFIEEQRKKLNQS 229

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHY 294
               L  +GQE   ET  +    + +  L  D        ++Q +T  +D F    +F Y
Sbjct: 230 AADDLFVYGQEKTLETVKLAKMNIAVNGLRGD--------VRQTNTYYEDPFGSFGKFDY 281

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------ISDGSMLFL 339
            L+NPPF      D +    E       RF   G+P+              + + + L++
Sbjct: 282 VLANPPFNVD---DVNLSRVE----IDARFNTYGIPRNKTKGKKQEQGNETVPNANYLWI 334

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
              A  L+      GRAA+V+++S      A   E++IR+ L+E +LI  ++ LP+++F+
Sbjct: 335 NLFATSLKPK----GRAALVMANSA---SDARHSEADIRQKLIEENLIYGMLTLPSNMFY 387

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVS 458
              +   LW     KT+    K+  I+A +++T +       R  + +Q   I  I ++ 
Sbjct: 388 TVTLPATLWFFDRGKTD---DKILFIDARNIFTQVDRS---HREFSTEQISNIAIISHLR 441

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           R        L    F    +K+         + +  +  L   +   K       F    
Sbjct: 442 RGRSHRFIELINNYFQQGMVKLRENQAQVQQVSQQLITVLNDGMDDIKAREAAVDFLNLW 501

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
                 +I   G+ + +    I        + + S +F 
Sbjct: 502 DDLPDLEIQYQGYLDKYNFPEINIEIQNQAQQELSAAFK 540


>gi|322420369|ref|YP_004199592.1| adenine-specific DNA-methyltransferase [Geobacter sp. M18]
 gi|320126756|gb|ADW14316.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacter
           sp. M18]
          Length = 539

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 101/468 (21%), Positives = 180/468 (38%), Gaps = 51/468 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58
            + T +  +L   +W  A+ L      K  ++   IL    LR  E      R  +    
Sbjct: 8   EKDTAT-TTLEKRLWDAADQLRANSGLKPQEYSGPILGLIFLRFAEVRFAVQRGKLEAAG 66

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
             +  GS +D  +     G   Y   E     L +     ++ + +       + I +  
Sbjct: 67  ASSRRGSRVDDPAAYHAEG-ILYLPPEARFDYLLTLPEAADIGAKVN---TAMREIEKHN 122

Query: 119 D-FSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              SS + +   L  + LL ++ K  S I   P ++       IYE+ +  F     +G 
Sbjct: 123 QQLSSVLPKTYNLFTSTLLKELLKKVSEI---PASLDYDAFGRIYEYFLGAFAMTEGQGG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L   ++                 + DP CG+GG    +   VA+   + 
Sbjct: 180 GEFYTPSSIVKLLAEVI-----------EPFHGRILDPACGSGGMFVQSARFVAEHQKN- 227

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFH 293
                L   G E   ET  +C   + +  LE D R   + N     +   D  +   +F 
Sbjct: 228 -PAAELAICGVEKTDETGRLCRLNLAVHGLEGDIRHGGNVN-----SYYDDPHSATGQFD 281

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPP 350
           + L+NPPF        +AV+KE     +G   RF  GLP+  + + L++    + L    
Sbjct: 282 FVLANPPFNV------NAVDKERLKDMVGAGRRFPCGLPRSDNANYLWIQLFYSAL---- 331

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
           N  GRA  V+++S      A S E E+R+ L+E   ++ +VA+  ++F+   +   LW  
Sbjct: 332 NATGRAGFVMANSA---SDARSSEQELRQKLIEARAVDVMVAVGPNMFYTVTLPCTLWFF 388

Query: 411 SNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
              K + +R   V  I+A  ++  +    +            ++ +Y 
Sbjct: 389 DKGKAKTKRADTVLFIDARHIYRQVDRAHRDWTAAQIGFIGNLVRLYR 436


>gi|169823773|ref|YP_001691384.1| type I restriction-modification system specificity subunit
           [Finegoldia magna ATCC 29328]
 gi|167830578|dbj|BAG07494.1| type I restriction-modification system specificity subunit
           [Finegoldia magna ATCC 29328]
          Length = 828

 Score =  254 bits (650), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 186/485 (38%), Gaps = 66/485 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A  L G  + + +   +L     + +    +  R           
Sbjct: 1   MAVKKSELYSLLWDAANKLRGGVEPSRYKDYVLLLLFFKYVTDKYKGQR-----YGEFEI 55

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
           G     +  +   G                 +    ++  I  F +  N K    D  F+
Sbjct: 56  GEGASFDDIIMAKGKP---------------DVGERVDKIIQKFLEINNLKGALPDVSFN 100

Query: 122 STIARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174
           +    L K   L      +   F    +         D ++ + YE+ + +F  E  +  
Sbjct: 101 NP-EELGKGKELVDKVSGLIAIFQNPAIDFKKNRASGDDIIGDAYEYFMMKFAQESGKSK 159

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V  + + L+   D    + SP    TL+DP  G+G  L  A +   +     
Sbjct: 160 GQFYTPSEVSRVISRLIGIGD---IENSPNKKWTLHDPAAGSGSLLIRAAD---EAPVDS 213

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
               I+  +GQE   +T  +     ++           +  +   +TLS   +T      
Sbjct: 214 NGDSIVTIYGQEKYSDTAGLAKMNFILHN-------KGTGEVHSDNTLSAPYYTDDFGEL 266

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLEL 348
            +F + + NPPF  K   D      +       RF G G+P   +G   + +H+   L  
Sbjct: 267 RKFDFIVMNPPFSDKDWSD----GIKADEDTYHRFDGYGIPPEKNGDYAWFLHVLKAL-- 320

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             N  G+A I+L    LF G A   E  IR+ +L+   I+ IV LP++LF+ T I   + 
Sbjct: 321 --NENGKAGIILPHGVLFRGNA---EETIRKEILKRKYIKGIVGLPSNLFYGTGIPACII 375

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           I+     ++R G + +I+A+D +   + +G K R + +    +I+ ++ ++   K +SR 
Sbjct: 376 IIDKENADKREG-LFMIDASDGF---KKDGDKNR-LREQDIEKIVQVFTNKTEIKGYSRF 430

Query: 468 LDYRT 472
           + Y+ 
Sbjct: 431 IAYKE 435


>gi|321310228|ref|YP_004192557.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
 gi|319802072|emb|CBY92718.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
          Length = 513

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 184/504 (36%), Gaps = 86/504 (17%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +  +AN IW   + L  +   T+    ILP    R +          + +      G   
Sbjct: 3   SKDVANKIWSACDKLRSNMDGTEMKNYILPVVFYRFIS-------EKISQYVNDNFGKGG 55

Query: 68  DLESFVKVAGYSFYNTSE-----------YSLSTLGST----------NTRNNLES---Y 103
              S  +V      N+S            +    L             +    L     Y
Sbjct: 56  SDYSLWEVDKAKKINSSLVQGLGCSLLPIHLFQNLKKDIDGNPEEGVLDLGKKLNEAFTY 115

Query: 104 IASFS------DNAKAIFEDFDFSST--IARLEK-AGLLYKICKNFSGIELHPDTVPDRV 154
           +   S       N + +  + +++       L K   ++  +    + +E   D   +  
Sbjct: 116 LEESSLHTSSASNFRNLLVNTNWNDVKLGGTLSKRNEIIADLVNIVNEMEFGSDYEDN-- 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE LI R+ S   +   +F TP  V  L + +++   +         +  +YDPTC
Sbjct: 174 LGDVYEFLISRYASNGGKKGGEFYTPARVSELLSKIVIFEKE--------KVSKVYDPTC 225

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L      +   G    +      +GQE    T+ +C   M I  +  +       
Sbjct: 226 GSGSLLL---KFMKMYGRDKGVK----VYGQENNVTTYNLCRMNMFIHGMSFN-----DF 273

Query: 275 NIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPK 330
           +I  G TL +         F   +SNPP+  KW+ D D            RF    G   
Sbjct: 274 DICLGDTLGEPCLTHEEGMFDVVISNPPYSLKWKSDGDKQIAN-----DSRFRDQGGFAP 328

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+ H  ++L+      G AAIV ++  L        E  IR++L+EN+ + A+
Sbjct: 329 KDKADFAFIQHALSRLKKD----GVAAIVCATGILTR---MGREENIRKFLVENNYVHAV 381

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + +  DLF+ T I T + +L   K      KV  I+AT  +    N    +  ++ +   
Sbjct: 382 IHMAKDLFYGTGIETVILVLKKEK---LDDKVLFIDATQKFIKSSN----KNDLSLENVE 434

Query: 451 QILDIYVSRENGKF-SRMLDYRTF 473
           +IL +Y  R++ +F S +   +  
Sbjct: 435 EILRLYGDRKSEEFLSYLASNKEV 458


>gi|325981135|ref|YP_004293537.1| N-6 DNA methylase [Nitrosomonas sp. AL212]
 gi|325530654|gb|ADZ25375.1| N-6 DNA methylase [Nitrosomonas sp. AL212]
          Length = 772

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 101/576 (17%), Positives = 211/576 (36%), Gaps = 72/576 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                  L   +W  A+ L    D K +++   +L    L+  +        A+  +Y  
Sbjct: 2   NKVQLKKLEADLWSAADTLRANSDLKSSEYATPVLGLIFLKFADNNYRRHEKAILSEYQQ 61

Query: 62  FGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKA 113
             G+      S + +    FY         L       +    L+     I  +    + 
Sbjct: 62  LQGTRREKPVSEIAIEQCGFYLPDHTRYDYLLNLPEEKDIAKALKEAMKAIEEYKPELEG 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    ++++         +  ++ + F+ I   P      +   IYE+ +  F     + 
Sbjct: 122 VLPKDEYAALTRT--DKTIPQQLLRTFADI---PANATGDLFGQIYEYFLSEFARSEGQK 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV L   ++                 ++DP CG+GG    +   +A   + 
Sbjct: 177 GGEFFTPRSVVRLMVEII-----------EPHGGKVFDPACGSGGMFVQSAQFIAAHRNE 225

Query: 234 HKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291
            K     V   GQE   +T  +    + +  L  +        I+Q +T  +D +   ++
Sbjct: 226 LKGADSGVYVCGQEKTQDTVKLAKMNLAVNGLRGE--------IKQANTYYEDPYDSFEQ 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPK-------ISDGSMLFLMHLA 343
           F Y L+NPPF           +    N   + R    + K       + +G+ L++   A
Sbjct: 278 FDYVLANPPFNVDDVSLSSVEKDRRFNTYGIPRNKSKVKKADEGKETVPNGNYLWISLFA 337

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GRAA+V+++S      A   E++IR+ L+E +LI A++ LP+++F+   +
Sbjct: 338 TSLKPQ----GRAALVMANSA---SDARHSEADIRKTLIEQNLIYAMLTLPSNMFYTVTL 390

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI--LDIYVSREN 461
              LW     K      ++  I+A +++T I       R  + +  + I  +      + 
Sbjct: 391 PATLWFFDKAKRG---DRILFIDARNIFTQIDRA---HREFSAEHIQNIALISHLHKGQR 444

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            KF R++D     Y    + R +  +       +  + A +         +    ++L+ 
Sbjct: 445 EKFIRLIDR----YFAAGMERLIENN-----EKIEPVCAQLLDVLDDAGGKQAVSELLQH 495

Query: 522 MMQ----QIYPYGWAESFVKESIKSNEAKTLKVKAS 553
             +    + +   + +     + +++E   +  K S
Sbjct: 496 WAELDKLKTHYQRYIQQNGFVTPRNSEESYVHDKIS 531


>gi|332297066|ref|YP_004438988.1| type I restriction-modification system, M subunit [Treponema
           brennaborense DSM 12168]
 gi|332180169|gb|AEE15857.1| type I restriction-modification system, M subunit [Treponema
           brennaborense DSM 12168]
          Length = 866

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 100/480 (20%), Positives = 181/480 (37%), Gaps = 63/480 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65
           +   LA  IW++A ++    +  ++   IL F   + L    L   +            S
Sbjct: 2   NKQQLATKIWESANEMRSKIEANEYKDYILGFIFYKYLSETELRFAKKNGCTDADIKKFS 61

Query: 66  NIDLESFVKVAGYSFYNTSEY----SLSTLGSTNTRNNLESYIASFS----DNAKAIFED 117
             D E+   +     Y  +      +  T G     +N+   +++FS       K +F+ 
Sbjct: 62  ENDAETATYIKSNIGYFIAYENLFSTWITKGKDFDVSNVRDALSAFSRLINPAHKKVFDG 121

Query: 118 F--DFSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 S +++L +        + K+    + I +        V+  +YE+LI  F +  
Sbjct: 122 IFNTLQSGLSKLGETAASQTSAISKLLALINDIPMDGK-QDYDVLGFVYEYLISMFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++        +        +YDPT G+G  L    N     
Sbjct: 181 GKKAGEFYTPHEVSLLMSEVIAFHLKNRKEIK------IYDPTSGSGSLLI---NIGRSV 231

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             H      +  + QEL+  T+ +    +++R +  D         +   TL  D     
Sbjct: 232 AKHIDNKNNIKYYAQELKQNTYNLTRMNLIMRNILPDNIVT-----RNADTLESDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ +KW+      +  + N        GL   S     FL
Sbjct: 287 ENDPVHTYDPLYVDAVVSNPPYSQKWDSTNKENDPRYSN-------YGLAPKSKADYAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    ++      G   IVL    LF G     E EIR+ L+E D I+AI+ LP ++FF
Sbjct: 340 LHDLYHVKPD----GIMTIVLPHGVLFRGGE---EGEIRKKLIEKDQIQAIIGLPANIFF 392

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T I T + +L  ++T+     V +++A+  +        K   +     ++I D    R
Sbjct: 393 GTGIPTVIIVLRQKRTDS---DVLIVDASKGYIKE----GKNNKLRSSDIKRITDTVNGR 445


>gi|321310237|ref|YP_004192566.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
 gi|319802081|emb|CBY92727.1| type I restriction-modification system, M subunit [Mycoplasma
           haemofelis str. Langford 1]
          Length = 523

 Score =  253 bits (646), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 106/504 (21%), Positives = 186/504 (36%), Gaps = 71/504 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--PTRSAVREK 58
           M         L   IWK+ EDL G     +    I      R +  +     ++S   + 
Sbjct: 1   MFNVREERRELYRSIWKSCEDLRGSMDGYEMKNYIFVMMFYRFMSESFVYWFSKSEWDDG 60

Query: 59  YLAFGGSNIDLESFV-----KVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIA------- 105
              F  +N+  E  +      V    F+         +      + +    I        
Sbjct: 61  NKDFDYANLSDEEAIPWKEDAVKKKGFFMLPSQLFGNVLKKVIEDQHFAEEINTCLPKIF 120

Query: 106 --------SFS--DNAKAIFEDFDFSS-TIAR--LEKAGLLYKICKNFSGIEL-HPDTVP 151
                    FS  ++ K +     +    +    LE+   + ++ K   G +        
Sbjct: 121 RAVENSSIGFSSEEDIKGLLTSVSWDDVKLGTVVLERNKKIVEVMKAIGGSKFDFISEHE 180

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+   YEHL+ ++ S   +   +F TP +V  L T + +            +   +YD
Sbjct: 181 IDVLGEAYEHLMEQYASTSGKKGGEFYTPPEVSRLLTKIAVGD-------KTYISGGVYD 233

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L   +N +           +    GQE    T+ +C   M +  +  +    
Sbjct: 234 PACGSGSLLLKCVNLL-------GAKNVSEMCGQEKNMTTYNLCRMNMFLHGVNYNK--- 283

Query: 272 LSKNIQQGSTLS--KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PG 327
              +I+ G TL       + KRF   +SNPP+  KW  +      + K     RF     
Sbjct: 284 --FDIRHGDTLEYPDPARSKKRFEIIVSNPPYSAKWAGE-----DDVKLLTDPRFEQVGA 336

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L   S     F++H  + L    +  G+A IV ++  L        E  IR+WL+  + I
Sbjct: 337 LAPKSAADFAFILHCLHLL----SSTGKAVIVCATGVLTRLGK---EKHIRKWLISQNYI 389

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           E+++ L   LF+ T ++  + ILS  K++     V  ++AT+++   RN    +  ++D+
Sbjct: 390 ESVIYLAPKLFYETGVSVVIMILSKSKSDS---NVLFVDATNIFIKDRN----QNRLSDE 442

Query: 448 QRRQILDIYVSRENGKFSRMLDYR 471
              QIL IY  R N  F   +   
Sbjct: 443 NIAQILKIYRERVNVPFVAKVASN 466


>gi|291542118|emb|CBL15228.1| type I restriction system adenine methylase (hsdM) [Ruminococcus
           bromii L2-63]
          Length = 511

 Score =  252 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 197/550 (35%), Gaps = 85/550 (15%)

Query: 26  FKHTDFGKVILPFTLLRRLECALE-----------PTRSAVREKYLAFGGSNIDLESFVK 74
              +++   IL F   R L    E                + E Y A   S    +    
Sbjct: 1   MDASEYKNYILAFMFYRYLSEHQEQYLLSNNVIDLEDGQTINEAYKAMAVSEDLADYIKD 60

Query: 75  VAGYSFYNTSE-YSLSTLGST------------NTRNNLESY--IASFSD-NAKAIFEDF 118
           ++    Y      + ++L                   N E +  +   ++ + + +F D 
Sbjct: 61  ISSALGYAIEPNDTWASLVEKIENSEVIPSDYQTIFANFEEHAKLNKEAEKDFRGVFNDV 120

Query: 119 DFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +   +    +  E+A  L +I K     +   D   D  +  IYE LI RF +   +   
Sbjct: 121 NLGDSRLGSSTNERAKSLNRIVKLVDSTQYKSDDGKDI-LGEIYEFLIGRFAATAGKKGG 179

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP +V  +   ++ D            + ++YDPTCG+G  L      V D      
Sbjct: 180 EFYTPHEVSKVLAKIVTDDVKESDS-----VFSVYDPTCGSGSLLLT----VQDEVPGGN 230

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------ 289
               +  +GQEL   T+ +    +++  +        +       TL  D   G      
Sbjct: 231 NTGAVKFYGQELNTTTYNLARMNLMMHGVSFQNMSLSNA-----DTLESDWPDGPDVKGI 285

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLAN 344
              + F   ++NPP+   W+  +  +       +  RF     L   +     F++H   
Sbjct: 286 DHPRSFDAVVANPPYSAHWDNSETKL-------KDPRFKDYGKLAPKTKADYSFVLHGLY 338

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN---DLIEAIVALPTDLFFRT 401
            L       G  AIVL    LF G A   E  IR+ L+E+   + I AI+ LP++LF+ T
Sbjct: 339 HLNEE----GTMAIVLPHGVLFRGAA---EGTIRQNLIEHPSGNRIYAIIGLPSNLFYGT 391

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            I T + +L  ++T +    +  I+A++ +   +N    +  +  +   +I+  Y  R++
Sbjct: 392 GIPTIIMVLKKKRTGK---DILFIDASNDFKKEKN----QNKLTAENIDKIISTYRERKD 444

Query: 462 -GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
             K++ +            +  P      +D T           RKL    +    ++  
Sbjct: 445 VPKYAHLASIEEIRQNDYNLNIPRY----VDTTEEEEEIDIDEVRKLIAQDKKEIEELEA 500

Query: 521 PMMQQIYPYG 530
            + +Q    G
Sbjct: 501 QIAEQFKLLG 510


>gi|119477797|ref|ZP_01617920.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143]
 gi|119448958|gb|EAW30199.1| N-6 DNA methylase [marine gamma proteobacterium HTCC2143]
          Length = 707

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/648 (17%), Positives = 220/648 (33%), Gaps = 83/648 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T     L   +W  A++L    D K T++   +L    L+  +        A+ +++  
Sbjct: 2   NTEQLKQLEKDLWSAADNLRANSDLKSTEYATPVLGLIFLKFADNNYARAEQAINKEFAK 61

Query: 62  FGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKA 113
             G+        + +    FY         L       +    ++     I  +      
Sbjct: 62  LTGTRREKPIDEIAIEKCGFYLPPHARYDYLLNLPEQEDAAKKIKEAMLDIEKYKPELDG 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    ++           +  ++ KNFS I   P      ++  IYE+ +  F     +G
Sbjct: 122 VLPKDEYVPLTRT--DKTIPAQLLKNFSNI---PRDASGDILGKIYEYFLGNFALAEGQG 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  VV L   ++                T+YDP CG+GG    + ++V      
Sbjct: 177 GGQFFTPTSVVKLMVEII-----------EPYKGTVYDPACGSGGMFVQSQHYVEQHRDE 225

Query: 234 HKIPPILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            K    L        +GQE   +T  +    + +  L  +        I+Q ++ S+D  
Sbjct: 226 LKALGELHEEDQLYVYGQEKTLDTVKLAKMNLAVNGLRGE--------IKQANSYSEDPH 277

Query: 288 TGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------I 331
            G  +F + ++NPPF                     RF   G+P+              +
Sbjct: 278 NGFGKFDFVMANPPFNVDDVPIATV-------EADTRFNTYGIPRKKTKAKAADKGKETV 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + L++   A  L+      GRAA+V+++S      A   E++IR+ L+EN+LI  ++
Sbjct: 331 PNANYLWISLFATSLKDNSKDSGRAALVMANSA---SDARHSEADIRQSLIENNLIYGML 387

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+++F+   +   LW     K +    K+  I+A + +T I    ++           
Sbjct: 388 TLPSNMFYTVTLPATLWFFDKNKQD---DKLLFIDARNTFTQIDRAHREFNEQQIHNIAI 444

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL- 510
           I  ++       F R++D   F     ++    +    +    L  LE       +  L 
Sbjct: 445 ISKLHKGNRQA-FVRLVDSY-FSQGIQQLSENQQHIAPISNQLLDVLEDQNGKLAVGDLV 502

Query: 511 HQSFWLDILKPMMQQ--IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
            Q   L  L+  +    I    +         + N+ +    K    F  A      + D
Sbjct: 503 KQWKGLKKLQTAVDNYFIEADVYKGKDDFNVSEKNKLQHKLRKKFDPFFDALHAGLKQLD 562

Query: 569 P----RADPVTDVNGEWIPDTNLT----EYENVPYLESIQDYFVREVS 608
                    V     +   D        + E     E+++    +EV 
Sbjct: 563 KIVRQHEKEVEQKKAKAASDGKSKRFTADREIKKLKEALEL-LHKEVK 609


>gi|291614892|ref|YP_003525049.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1]
 gi|291585004|gb|ADE12662.1| N-6 DNA methylase [Sideroxydans lithotrophicus ES-1]
          Length = 689

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 110/569 (19%), Positives = 208/569 (36%), Gaps = 75/569 (13%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                  L   +W  A+ L    D K +++   +L    L+  +       + +  +Y  
Sbjct: 2   NKEQLKKLEADLWSAADKLRANSDLKSSEYATPVLGLIFLKFADNNYRRFETEIHAEYTK 61

Query: 62  FGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESY---IASFSDNAKA 113
             GS      S + +    FY         L       N    L+     I  +    + 
Sbjct: 62  LKGSRREKKISDIAIEKCGFYLPDHARYEHLLNLPEEKNIAKALKEAMKAIEEYKPELEG 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    ++++         +  ++ + F+ I   P      +   IYE+ +  F     + 
Sbjct: 122 VLPKDEYAALTRT--DKTIPQQLLRTFADI---PADATGDLFGQIYEYFLSEFARSEGQK 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             +F TPR VV L   ++                 ++DP CG+GG    +   +A+    
Sbjct: 177 GGEFFTPRSVVRLMVEII-----------EPHGGKVFDPACGSGGMFVQSAQFIAEHRKE 225

Query: 234 HKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-R 291
            K     V   GQE   +T  +    + +  L  +        I+Q +T  +D +     
Sbjct: 226 LKGSESGVYVCGQEKTRDTVNLAKMNLAVNGLRGE--------IKQANTYYEDPYQSFGA 277

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------ISDGSM 336
           F Y L+NPPF                  +  RF   G+P+              + +G+ 
Sbjct: 278 FDYVLANPPFNVDDVSLSSV-------EKDKRFNTYGIPRNKSKVKKADAGKETVPNGNY 330

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L++   A  L+      GRAA+V+++S      A   E++IR+ L+E +LI A++ LP++
Sbjct: 331 LWINLFATSLKAQ----GRAALVMANSA---SDARHSEADIRKTLIEQNLIYAMLTLPSN 383

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ--ILD 454
           +F+   +   LW     KT+    K+  I+A +++T I       R  +++  +   I+ 
Sbjct: 384 MFYTVTLPATLWFFDKAKTD---DKILFIDARNIFTQIDRA---HREFSEEHIQNIAIIS 437

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL-HQS 513
                   KF +++D   F     +++        +    L  L+     + +  L  Q 
Sbjct: 438 QLHKGRREKFVQLIDRY-FAAGMQRLVENKTNVEPVSAQLLEVLDDAGGKQAVGELVQQW 496

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKS 542
             L  LK   +Q       ES V +  K+
Sbjct: 497 AGLAKLKTRYEQYQEKHADESAVDKKNKA 525


>gi|171920161|ref|ZP_02931556.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar
           1 str. ATCC 27813]
 gi|171902534|gb|EDT48823.1| hypothetical adenine-specific methylase [Ureaplasma parvum serovar
           1 str. ATCC 27813]
          Length = 476

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 102/525 (19%), Positives = 205/525 (39%), Gaps = 61/525 (11%)

Query: 33  KVILPFTLLRRLEC----ALEPTRSAVREKYLAFGGSNIDLESFVKVAG-----YSFYN- 82
            +I+    L+ +      A+   +   ++K+     ++ DL S     G      + +N 
Sbjct: 2   HIIIGIIFLKTISDKYNYAINSLKDKYKDKFNDSIKNDSDLISEFFPLGLIVPDEAHWNY 61

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
            S ++  +             I + +   K +F     S  + +      L  + + F+ 
Sbjct: 62  ISGFTTDSSIGEKIDQAFLK-IENQNPRLKGLFNKQYNSPELDK----TRLGNVVRKFND 116

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +       + ++  IYE+ +  F  +  +   +F TP+ VV L   +L           
Sbjct: 117 YDF--SQFNEDLVGRIYEYFLGEFFRKQGQKGGEFYTPKTVVELLIDIL----------D 164

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           P     +YDP CGTGG    A N++ +    +        +GQE + +T  +    +L+ 
Sbjct: 165 PNDNIKMYDPACGTGGMFVQARNYLHEQNKDYNKLV---IYGQEYQSQTWKLAKINLLLN 221

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               +       +     T  +DL  G++F   ++NPPF  K    ++ +  E       
Sbjct: 222 GFNENDIHLGRGS---EDTFKEDLHKGQKFDIIVANPPFNLKKWYREELLNDE------- 271

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           RF  G+P  ++ +  +L+H+ +KL       G+A ++L++  L +      ES +R+ ++
Sbjct: 272 RFSWGMPPENNANYAWLLHIISKLNSR----GKAGVILANGSLSSSNKE--ESLLRKKMI 325

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E ++++AI++LP  LF+ T I+  +W  +  K  E    V  I A+ +         K R
Sbjct: 326 EENIVDAIISLPDKLFYTTQISASIWFFNKNKENE---NVLFIEASKMGELKTK---KLR 379

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD 501
            +  D   +I ++Y   E G+     D    G+ +   +   +   + L        E +
Sbjct: 380 FLTKDDILKIKNVYDRHEQGE-----DVNVVGFAKTCTIDEIIENDYSLVPGRYVGFEQE 434

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
           +   +          + L  +  ++          KESIK    K
Sbjct: 435 VIDHEQLNHEIKGLQEELSILFDELEDLISQ---AKESIKKVLEK 476


>gi|295090547|emb|CBK76654.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 471

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 92/507 (18%), Positives = 177/507 (34%), Gaps = 59/507 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNT 96
              ++ L       +  ++ K             +  +     ++    + + +      
Sbjct: 1   MLFIKYLSDI---DKEDIQCKNNVCLSEQESNHVYFTIDNQPVFDYLYNNRNDMEIGNTI 57

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPDTVPDR 153
              L       S     + +   F+         EK  +L  + + F+ ++L P  +   
Sbjct: 58  NMVLSDVGKRNSGMVGHVLQGISFNDQGDLGETEEKNEVLRNLLEKFNCLDLRPSQLEFT 117

Query: 154 VM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +    +E+++    S   +   +  TP+ V  L   L+   +D             YDP
Sbjct: 118 DIVGEAFEYMVAMLASNDRKRGAESFTPKQVCELLAFLVQPKEDDRI----------YDP 167

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+GG L      V               +GQE+  ET A+C+  M +  +        
Sbjct: 168 TCGSGGLLLQVYKKV--------PGGKASIYGQEINAETWAICMMNMFLHGIN------- 212

Query: 273 SKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEK----------DKDAVEKEHKN 318
              I +G TLS           +F   ++N PF                ++   +   + 
Sbjct: 213 EAQIWKGDTLSNPKNIQNDKLMKFQVVVANLPFSLNQWDRGFLYKVDVDNQIKKKMSAEL 272

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               RF  G+P  S G   F++H+   L       GR A+VL    LF G     E  IR
Sbjct: 273 DPYHRFDLGVPPASKGDYAFILHMLASL---DEKNGRMAVVLPHGVLFRGA---SEGNIR 326

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           R ++E +L++ ++ LP +LF+ T+I   + I    +T+     +  I+A+      +  G
Sbjct: 327 RQIVEMNLLDTVIGLPANLFYGTSIPVCVLIFKKNRTDR---DILFIDASGNENIEK--G 381

Query: 439 KKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           K   I+ D    +I+  Y++R+   K+S +  +         +     +    D   +  
Sbjct: 382 KNHNILQDSAITRIVRTYMARQNENKYSYIASFDEIKGNDFNLSIARYVKNFEDDEKVNI 441

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQ 524
           +E       +          I K + +
Sbjct: 442 IEVKNAISNIEIELDKVQSQIRKYLEE 468


>gi|47459119|ref|YP_015981.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
 gi|47458448|gb|AAT27770.1| type I restriction enzyme m protein [Mycoplasma mobile 163K]
          Length = 526

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 107/493 (21%), Positives = 186/493 (37%), Gaps = 82/493 (16%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--------------- 50
            + + L   IW             DF + +      R +   L                 
Sbjct: 18  KNVSELKKSIWNA--------DEWDFKEYVFGIIFYRYISENLADYINQDEWKANKNTNF 69

Query: 51  TRSAVREKY----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIA 105
               + + Y           I  + F     + F N  + SL+    +       E   +
Sbjct: 70  RYENIEDNYILSRKEEIKELIKDKGFFIKPSHLFINILKKSLNDKDLNVTLGEVFEEIES 129

Query: 106 SFS-----DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV- 154
           S +      + K +F D + ++  ++L     E+   L K+ K    +EL          
Sbjct: 130 STNGTTSEKSFKGLFADINLNN--SKLGSTVNERNENLAKLIKVIGEMELGNFQDNSIES 187

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+  + S   +   ++ TP++V  L   + L     + K        +YDP C
Sbjct: 188 FGDVYEYLMSMYASNAGKSGGEYYTPQEVSELLAKITLVGKKEINK--------VYDPAC 239

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +    +       K        GQE    T+ +C   M +  +  +       
Sbjct: 240 GSGSLLLNFAKIL------GKEKVRNGFFGQETNQTTYNLCRINMFLHDINYNKF----- 288

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           NI QG TL+  L    + F   +SNPP+  KW    + +          RF P   L   
Sbjct: 289 NISQGDTLTNPLHNKFEPFEAIVSNPPYSIKWAGKSNPL-----LINDPRFSPAGVLAPE 343

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ I+AI+
Sbjct: 344 SKADLAFIMHSLSYL----AVNGTAAIVTFPGVMYRGGA---EQKIRKYLVDNNFIDAII 396

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + +L   K       +  I+A+  +  I N       ++ +   +
Sbjct: 397 QLPENLFFGTSIATCILVLKKNK---LVNDILFIDASKEFQKITNS----NKLSKENISK 449

Query: 452 ILDIYVSRENGKF 464
           IL+ Y  R + + 
Sbjct: 450 ILNTYEKRIDLEH 462


>gi|119510903|ref|ZP_01630026.1| type I restriction-modification system, M subunit, putative
           [Nodularia spumigena CCY9414]
 gi|119464431|gb|EAW45345.1| type I restriction-modification system, M subunit, putative
           [Nodularia spumigena CCY9414]
          Length = 471

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 146/353 (41%), Gaps = 35/353 (9%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    S   L  FIW  A+ L G ++   + +V+LP  +L RL+  LEPT+  V +    
Sbjct: 4   TNTENSHQDLIGFIWTIADKLRGPYRPPQYRRVMLPLIVLGRLDAVLEPTKQDVLDAKAK 63

Query: 62  FGGSNIDLESFVKV--------AGYSF-YNTSEYSLSTL--GSTNTRNNLESYIASFSDN 110
           +    +  E+F K             F YNTS+++   L   +    +NL +YI  FS  
Sbjct: 64  YEAMGLQGEAFEKAIAKVAIGSDRQQFLYNTSKFTFQELLNDADGIASNLINYINGFSPR 123

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDRVMSNIYEHLIRRFGS 168
           A+ IFE F+F S I +L+++  LY I K+F    ++L P  + +  M  ++E L+R+F  
Sbjct: 124 ARDIFEKFNFESEIQKLDESNRLYLIIKDFCKPEVDLSPAQLSNLQMGYLFEELVRKFNE 183

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + +E A D  TPR+V+ L   L+   +  +F    G+ R++YDPT GTGG L+ +  H+ 
Sbjct: 184 QANEEAGDHFTPREVIRLMVNLVFCEETDVF--QQGIYRSVYDPTLGTGGMLSVSEEHIK 241

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                  +       GQE   E        ++   +       +                
Sbjct: 242 KQNPEANLG----LFGQEYNIEKLDEKRTALISHAVTKGLDPSVP-------------MK 284

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                +    P   +  +          K     R     P+  DG   F+  
Sbjct: 285 DSGIEWLGKIPNHWEVIKVKHLTKILRGKFTHRPRND---PRFYDGQYPFIQT 334


>gi|228475437|ref|ZP_04060155.1| N-6 DNA methylase [Staphylococcus hominis SK119]
 gi|228270219|gb|EEK11654.1| N-6 DNA methylase [Staphylococcus hominis SK119]
          Length = 410

 Score =  249 bits (637), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 18/306 (5%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSN--IDLESFVKVAGYSFYNTSEYSLSTL--GST 94
           T+++RL   L  TR  V +        N  +        +GYSFYNTS Y+  TL    +
Sbjct: 110 TVIKRLHDTLLKTRDEVIKSAENTQSMNSVMRERLLKNASGYSFYNTSLYTFETLLADPS 169

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH--PDTVPD 152
           N  +N   ++  FS+N + I ++F F   I  +     L+ + + F+ ++ +  PD +  
Sbjct: 170 NIESNFRDFLNGFSENMQDILDNFKFDVEITTMTDNDALFYVIQEFNKVDAYLDPDKMTS 229

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             M  ++E L+R+F    +E A    T RD+++L T LLL  D         + +T+YD 
Sbjct: 230 TDMRYVFEKLVRKFSESYNEEAGAHFTSRDIIYLMTDLLLIEDKNTLF-KEHVFKTVYDQ 288

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T GT   L+     + D     ++       GQEL PET+A+  A  +IR  E       
Sbjct: 289 TMGTSQMLSAMTERIHDVNDTAEVAT----FGQELNPETYAIAKADTMIRGGEP------ 338

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +N+   STL+ D F G  F Y +SNPPFG  W+KD+++V+ EH+  ELGRFG GLP++S
Sbjct: 339 -ENMALESTLTNDQFEGFTFDYYISNPPFGVDWKKDQESVKAEHELSELGRFGVGLPRVS 397

Query: 333 DGSMLF 338
           DG +LF
Sbjct: 398 DGQLLF 403


>gi|167855556|ref|ZP_02478317.1| putative type I modification enzyme [Haemophilus parasuis 29755]
 gi|167853302|gb|EDS24555.1| putative type I modification enzyme [Haemophilus parasuis 29755]
          Length = 443

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/451 (19%), Positives = 167/451 (37%), Gaps = 55/451 (12%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--- 151
           N  ++    I   +   K + +      +  ++E++ LL  +   FS       T+    
Sbjct: 33  NLIDDAFDAIEQDNPKLKNVIQRI----SPYKVEESILLG-LIDLFSDTNFTRPTLDGKQ 87

Query: 152 -----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  ++ ++YE+ + +F     +    + TP+ +V L   +L               
Sbjct: 88  ISLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYK 136

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+GGF       + +   +      +   GQE  P T  +    M IR +E 
Sbjct: 137 GRIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEF 193

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           D  +  +       T S      K+  + ++NPPF  K               +  R+  
Sbjct: 194 DFGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWNESLAQDPRWQY 240

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G+P   + +  +L H+   L       GR A++L++  + +      E EIR+ +L+ DL
Sbjct: 241 GIPPEGNANFAWLQHMIYHLSP----NGRMALLLANGSMSSNTNN--EGEIRKNILKADL 294

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +EA++ALP+ LF  T I   +WIL+  K    +G+V  I+A  L           R    
Sbjct: 295 VEAMIALPSQLFTNTQIPACIWILNKNKAR--KGEVLFIDARQLGYMKDRV---LRDFTA 349

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWR 505
           D   ++ D Y S +    +   +   F Y    +    +  F+L         E +    
Sbjct: 350 DDIAKVADTYHSWQQS--ADYQNIPAFCYTA-SLDEIAQNDFVLTPGRYVGAAEQEDDGV 406

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
             +   Q     + +   Q        ++ +
Sbjct: 407 PFAEKMQELTALLQQQFKQSAELEAKIKANL 437


>gi|313894016|ref|ZP_07827582.1| putative type I restriction-modification system, M subunit
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441580|gb|EFR60006.1| putative type I restriction-modification system, M subunit
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 579

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 183/488 (37%), Gaps = 71/488 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+       L + +W +A+ L          +G+ IL    LR  +   +  +  + E+
Sbjct: 1   MTDKE--LKQLKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEIIEEE 58

Query: 59  YLAFGGSNIDLE-SFVKVAGYSFYNTS--EYSLSTLGSTNTRNN-----LESYIASFSDN 110
           Y    G  ++     + +    FY      Y        +             I + +  
Sbjct: 59  YNRLKGGRMEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIETENPK 118

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +    +  + +   E+  LL  I + F  I   P+     +   IYE+ +  F    
Sbjct: 119 MDGVLPK-EVYAQLVPEEEPELLSNIVRIFKDI---PENSTVDIFGEIYEYFLGNFALAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  VV     +            PG  +   DP CG+GG    A  ++ + 
Sbjct: 175 GKDGGTFYTPATVVRYMVEV--------LNPQPGE-KKFLDPACGSGGMFVQAARYMHNH 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +          +G E EP+T  +    +L+  +  D        I Q ++   D +   
Sbjct: 226 NASESEQMKFRCYGVEKEPDTVKLAKMNLLLNNIRGD--------ITQANSFYSDPYNAA 277

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK---------------ISD 333
            +F Y ++NPPF       +   +         RF   G+P+               + +
Sbjct: 278 GQFDYVMANPPFNVDEVVVEKVSD-------DVRFNTYGVPRNKSKSTKKKSDKKETVPN 330

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + L++ + A  L    N  G+AA+V+++S      A   E +IR+ ++E  +I  +V L
Sbjct: 331 ANYLWIGYFATAL----NENGKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTL 383

Query: 394 PTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ- 451
           P+++F    +   LW    +K   +++ ++  I+A +++T +    +K    +D+Q +  
Sbjct: 384 PSNMFSSVTLPATLWFFDKQKPNTDKKNEILFIDARNVFTQVDRAHRK---FSDEQIKNL 440

Query: 452 --ILDIYV 457
             I  +Y 
Sbjct: 441 GVITKLYH 448


>gi|188532536|ref|YP_001906333.1| Type I restriction-modification system, M subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188027578|emb|CAO95425.1| Type I restriction-modification system, M subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 494

 Score =  247 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 173/461 (37%), Gaps = 68/461 (14%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79
               G          I+    L+ +   +      + E  ++     +         G S
Sbjct: 19  NIFRGRLDAIQCLDYIISLIFLKYISDLICD----INEDRVSDNDLRLKELLSNVPKGMS 74

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFDFSSTIARLE--- 128
           FY+ S    S +        + + ++ + +            IF D DF+S   RL    
Sbjct: 75  FYSIS----SEINHGGIGERINTALSCYDEAIFQSLYKCDSRIFSDIDFTS--DRLGPAR 128

Query: 129 -KAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +   L ++   F+  E   +   D    +S I   L  +  SE      DF TP  V  
Sbjct: 129 GRDAFLSELMHIFNSREFQFNYYNDGADRISLICSILFEKTASEAGLRGGDFYTPHGVSA 188

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L + L+          SP    ++YDP CGTG  L  A++ +     + +       +GQ
Sbjct: 189 LLSELV----------SPRAGDSIYDPACGTGSLLLSAVHKI----PYIEKCQNHNVYGQ 234

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPP 300
           E+   +  +    M +  +        S  I+ G       F        +F   LSNPP
Sbjct: 235 EIIKVSWNIAYINMFLHGV-------YSCKIKWGDVFQNPQFKNSKSELAKFDVVLSNPP 287

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F            KE  +   GRF  G+P  S     F++H+   L+      GR A+V+
Sbjct: 288 FSMSNWG-----NKEALSDRFGRFAMGVPPQSKADYAFILHMIASLKDDT---GRMAVVV 339

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
               LF G     E+ IR  L++ +L++A++ LP  LF  TNI+T + I    K      
Sbjct: 340 PHGVLFRGAN---EALIRMNLIKENLLDAVIGLPERLFLSTNISTAILIFRKNK---MDS 393

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            V  I++T L+ + +     R  I  +  ++IL  +  R++
Sbjct: 394 NVLFIDSTILFENSKG----RNYITGEHIKRILKAFHERQD 430


>gi|71906938|ref|YP_284525.1| N-6 DNA methylase [Dechloromonas aromatica RCB]
 gi|71846559|gb|AAZ46055.1| N-6 DNA methylase [Dechloromonas aromatica RCB]
          Length = 529

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 165/460 (35%), Gaps = 46/460 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
              T +   L + +W  A+ LW +   K ++F   +L    LR  E       + +    
Sbjct: 13  NRMTINLQDLESRLWSAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLVAGG 72

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
           L       D+E F   A  + Y       + L      +++   I       +A  ++ +
Sbjct: 73  LEVS----DIEKFDYQAEGALYLPETARFTYLLDLAEGHDIGKAINEAMAAVEA--DNDE 126

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
               + R     +  ++      +      +       IYE+ + +F     +    F T
Sbjct: 127 LKGVLPR-SYGKVENRVLVELLRLLNGLGEIEGDAFGKIYEYFLGKFALAEGQKGGVFYT 185

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V L   ++                 ++DP CG+GG    +   V            
Sbjct: 186 PTSIVKLIVEII-----------EPFHGQIFDPACGSGGMFVQSAMFVGRHKKRAAEEL- 233

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSN 298
               G E   +T  +    + +  L  D        +++ +T  +D      RF + ++N
Sbjct: 234 -TVFGTEKSNDTVKLAKMNLAVHGLSGD--------VRESNTYYEDPHKAVGRFDFVMAN 284

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF             + +  +  RF  G+P   + + L++    + L    N  GRA  
Sbjct: 285 PPFNVSG-------VDKERIKDDPRFPFGVPTTDNANYLWIQLFYSAL----NNTGRAGF 333

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-E 417
           V+++S    G A   E EIR+ L+ +  +EAIV++  + F+   +   LW     K + E
Sbjct: 334 VMANSA---GDARGAELEIRKKLILSGGLEAIVSVGPNFFYTVTLPCTLWFFDKTKAKRE 390

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           R+ KV  I+A   +  +    +       +    I+ ++ 
Sbjct: 391 RKDKVLFIDARGYYRQVSRAIRDFLPEQVEFLSNIVRLWR 430


>gi|169825229|ref|YP_001692840.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
 gi|167832034|dbj|BAG08950.1| type I restriction-modification system DNA methylase [Finegoldia
           magna ATCC 29328]
          Length = 579

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/488 (18%), Positives = 180/488 (36%), Gaps = 71/488 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT+       L + +W +A+ L          +G+ IL    LR  +   +  +  +  +
Sbjct: 1   MTDKE--LKELKDTLWHSADVLRASAHLAANKYGQPILGLIFLRYADILYKQHKEEIEAE 58

Query: 59  YLAFGGSNIDLE-SFVKVAGYSFYNTS--EYSLSTLGSTNTRNN-----LESYIASFSDN 110
           Y    G  ++     + +    FY      Y        +             I   +  
Sbjct: 59  YNRLKGGRMEKSIKEISIEKCGFYLPECAYYDFINDAPDDANKATLVKKAMEAIEDENPK 118

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +    +  + +   E+  LL  I + F  I   P+     +   IYE+ +  F    
Sbjct: 119 MDGVLPK-EVYAQLVPEEEPELLSNIVRIFKDI---PENSTIDIFGEIYEYFLGNFALAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  VV     +            PG  +   DP CG+GG    A  ++ + 
Sbjct: 175 GKDGGTFYTPATVVRYMVEV--------LNPQPGE-KKFLDPACGSGGMFVQAARYMHNH 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +          +G E EP+T  +    +L+  +  D        I + ++   D +   
Sbjct: 226 NASESEQMKFRCYGVEKEPDTVKLAKMNLLLNNVRGD--------ITEANSFYSDPYNAY 277

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK---------------ISD 333
            +F Y ++NPPF       +   +         RF   G+P+               + +
Sbjct: 278 GQFDYVMANPPFNVDEVVVEKVSD-------DNRFNTYGVPRNKSKSKKKKSDKKETVPN 330

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + L++ + A  L       G+AA+V+++S      A   E +IR+ ++E  +I  +V L
Sbjct: 331 ANYLWIGYFATALNEK----GKAALVMANSA---SDASGSEYDIRKKMIEEGIISQMVTL 383

Query: 394 PTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ- 451
           P+++F    +   LW    +K   +++ ++  I+A +++T +    +K    +D+Q +  
Sbjct: 384 PSNMFSSVTLPATLWFFDKQKPNTDKKNEILFIDARNVFTQVDRAHRK---FSDEQIKNL 440

Query: 452 --ILDIYV 457
             I  +Y 
Sbjct: 441 GVITKLYH 448


>gi|15828904|ref|NP_326264.1| restriction modification enzyme subunit M2 [Mycoplasma pulmonis UAB
           CTIP]
 gi|14089847|emb|CAC13606.1| RESTRICTION MODIFICATION ENZYME SUBUNIT M2 [Mycoplasma pulmonis]
          Length = 520

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 185/498 (37%), Gaps = 70/498 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++  L   + K  + L    + T++   I+ F   + L    E      +E+      S
Sbjct: 2   SNSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61

Query: 66  NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109
             D         +  +      F+   +YS   +        N    +E     I S + 
Sbjct: 62  EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121

Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                     K +F + DFS+     I   EK   +  I K  + + L  D V      N
Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIKEINTLNLSMDEVD--HFGN 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  F S+  + A +F TP  V  L   ++              I   YDP CG+G
Sbjct: 179 TYEYLLSEFASDTGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L    N V               +GQE++  T+ +     ++R +          +++
Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276

Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            G TL   L       F   ++NPPF +KW   ++  +    N       P L   S   
Sbjct: 277 SGDTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYAD 331

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL H+   +       G  A V S   L        E +IR+++++ + I+ I+ LP 
Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRKSPK-AEEDIRKYIIDKNYIDTIIFLPP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T I + + +    K    + ++ +INAT  + + +    K+  ++D+   +I   
Sbjct: 388 NLFYNTGIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442

Query: 456 YVS-RENGKFSRMLDYRT 472
           +   RE   FS+ + Y  
Sbjct: 443 WKEKREEENFSKYISYED 460


>gi|217968469|ref|YP_002353703.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|217505796|gb|ACK52807.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 517

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 178/495 (35%), Gaps = 69/495 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            +     L   +W  A+ LW +   K ++F   +L    LR  E       + + E  L 
Sbjct: 1   MSLDLNQLETRLWAAADQLWANTGLKPSEFSNPVLGLIFLRYAEKRFHEAEAKLIESGLG 60

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-------SFSDNAKAI 114
                   E F   A  + Y       S L       +L   +        + ++  K +
Sbjct: 61  VSEI----EKFDYQAEGALYLPDNAHFSYLLDLAEGQDLGKAVNEAMAAVEAENEELKGV 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   +  RL    +L ++ +  +G+      V       IYE+ + +F     +  
Sbjct: 117 LPR-----SYGRLP-NTVLVELLRVLNGLG----EVEGDAFGKIYEYFLGKFALAEGQKG 166

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  +V L   ++                 ++DP CG+GG    +   V+      
Sbjct: 167 GVFYTPTSIVKLIVEII-----------EPFHGKIFDPACGSGGMFVQSAQFVSRHQKRA 215

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
                   +G E   +T  +    + +  L  D        I++ +T  +D         
Sbjct: 216 AEEL--TVYGTEKANDTVKLAKMNLAVHGLSGD--------IRESNTYYEDPHKAVVGNT 265

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F + ++NPPF             + +  +  RF  G+P   + + L++ H    L   
Sbjct: 266 GKFDFVMANPPFNVSG-------VDKERVKDDPRFPFGIPTTDNANYLWIQHFYTAL--- 315

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            N  GRA  V+++S    G A   E EIR+ L++   ++ IV++ ++ F+   +   LW 
Sbjct: 316 -NERGRAGFVMANSA---GDARGTELEIRKKLIQTGGVDVIVSVGSNFFYTVTLPCTLWF 371

Query: 410 LSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-SRENGKF-SR 466
               K + ER+ +V  I+A   +  +    +       +    I+ ++       +  S+
Sbjct: 372 FDRAKAKGERKDEVLFIDARGTYRQVSRAIRDFLPEQIEFLANIVRLWRGEAVEIEAGSQ 431

Query: 467 MLDYRTF---GYRRI 478
            +  + F   GYR I
Sbjct: 432 EMLRQQFPEGGYRDI 446


>gi|153951493|ref|YP_001398800.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938939|gb|ABS43680.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 489

 Score =  246 bits (629), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 99/517 (19%), Positives = 187/517 (36%), Gaps = 76/517 (14%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR----EKYLAFGGSNIDLESFVKVAG 77
           + G     DF   +L F     +    E  +S V     + Y        +      +  
Sbjct: 1   MRGSVDGWDFKSYVLGFLFYYFIC---ENLKSYVLNSFKQDYENLSDEMAENGRDTVINA 57

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIA------SFSDN-------AKAIFEDFDFSST- 123
             F+    +  + +       NL   ++        S N        + +F+D D  S  
Sbjct: 58  KGFFIKPSHLFTNIFKNANLENLNEKLSVVFKEIESSANGSESEKSFRGLFDDLDLYSNK 117

Query: 124 --IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                 E+   + KI +  S ++LH +        + YE L+  + S   +   +F TP+
Sbjct: 118 LGADNKERNKKILKIMETISELDLHYNENEIDAFGDAYEFLMTMYASNAGKSGGEFFTPQ 177

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
           +V  L   + L  +    K        +YDP CG+G  L      +              
Sbjct: 178 EVSKLLVEITLHNNAKPNK--------VYDPACGSGSLLLQYKKSLKSDPKKG------- 222

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSN 298
             GQE+   T+ +    M +  +          +I  G TL   S++    + F   +SN
Sbjct: 223 YFGQEINITTYNLARMNMFLHDVN-----YTRFDIAHGDTLISPSENHKELEPFDAIVSN 277

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRA 356
           PP+  KWE      +         RF     L   S   + F+MH  + L       G A
Sbjct: 278 PPYSTKWEG-----KDNALLINDERFNKAGVLAPTSKADLAFVMHSLSWLSEK----GSA 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIV     ++   A   E EIR++++E + ++ +++L  +LFF T+IA  + +L   KT+
Sbjct: 329 AIVCFPGVMYRSGA---EKEIRKYIIEENFVDCVISLAPNLFFGTSIAVCILVLRKNKTD 385

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           +       INA + +  + N    + +++ +    IL +Y  R+               +
Sbjct: 386 KNT---LFINANEEFIKVTN----KNMLSKENLENILKLYKDRKEVPH---------LTK 429

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            + +    +  + L  +    ++       +  L++ 
Sbjct: 430 LVSIEEIAKNDYNLSVSSYVEVKDTREIIDIKVLNKE 466


>gi|145631522|ref|ZP_01787290.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982867|gb|EDJ90384.1| putative type I restriction-modification system, methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 283

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 129/281 (45%), Gaps = 30/281 (10%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F  E +E A +  TPR+V+ L T L+ DP           I T+YDP CG+GG LT++
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKDQI----PAIITIYDPACGSGGMLTES 241

Query: 224 MNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIR 262
            N +         +    +   G+E   ET+A+C + M+I+
Sbjct: 242 QNFIEQKYPLSESQGERSIFLFGKETNDETYAICKSDMMIK 282


>gi|329123370|ref|ZP_08251934.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116]
 gi|327470952|gb|EGF16407.1| type I modification enzyme [Haemophilus aegyptius ATCC 11116]
          Length = 443

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 156/453 (34%), Gaps = 56/453 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP- 151
           +    +     I   ++  K + +                L  +   FS       T   
Sbjct: 32  AKLIDDAF-DAIEKDNEKLKGVLQRIS-----GYAVNEDTLRGLIILFSDTHFTRPTYNG 85

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     +    + TP+ +V L   +L             
Sbjct: 86  EPVHLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EP 134

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 135 YSGRMYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 191

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NPPF       +  V+         R+
Sbjct: 192 DYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNISDWWSESLVD-------DPRW 238

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 239 AYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAIINA 292

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 293 DLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 347

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I D   + +    S   + +    +   +       F+L         E +  
Sbjct: 348 TADDIAKIADTLHTWQK---SDGYENQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDD 404

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 405 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 437


>gi|2581810|gb|AAC25972.1| N6 adenine methylation (M) subunit homolog [Mycoplasma pulmonis]
          Length = 520

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 103/498 (20%), Positives = 185/498 (37%), Gaps = 70/498 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++  L   + K  + L    + T++   ++ F   + L    E      +E+      S
Sbjct: 2   SNSKELIAVVKKICDQLRSKMEVTEYRDYVMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61

Query: 66  NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109
             D         +  +      F+   +YS   +        N    +E     I S + 
Sbjct: 62  EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121

Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                     K +F + DFS+     I   EK   +  I +  + + L  D V      N
Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIEEINTLNLSMDEVD--HFGN 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  F S+  + A +F TP  V  L   ++              I   YDP CG+G
Sbjct: 179 TYEYLLSEFASDAGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L    N V               +GQE++  T+ +     ++R +          +++
Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276

Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            G TL   L       F   ++NPPF +KW   ++  +    N       P L   S   
Sbjct: 277 SGDTLINPLHIEEEDSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYAD 331

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL H+   +       G  A V S   L        E +IR+++++ + I+ I+ LP 
Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRISPK-AEEDIRKYIIDKNYIDTIIFLPP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T I + + +    K    + ++ +INAT  + + +    K+  ++D+   +I   
Sbjct: 388 NLFYNTGIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442

Query: 456 YVS-RENGKFSRMLDYRT 472
           +   RE   FS+ + Y  
Sbjct: 443 WKEKREEENFSKYISYED 460


>gi|282917067|ref|ZP_06324825.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|282319554|gb|EFB49906.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
          Length = 460

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/489 (22%), Positives = 195/489 (39%), Gaps = 50/489 (10%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E  R  ++ + +   G  I+ +            T ++ +  L +T  R    S +   S
Sbjct: 15  EEYREDLKAELIDQVGYFIEPQDLFSAM-IREIETQDFDIEHL-ATAIRKVETSTLGEES 72

Query: 109 DN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           +N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE LI 
Sbjct: 73  ENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIG 132

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L    
Sbjct: 133 RFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG 184

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     K   +    GQE    T+ +    ML+  +     R  + +I+   TL  
Sbjct: 185 ----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLEN 229

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H+ +
Sbjct: 230 PAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVH 284

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
            L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I
Sbjct: 285 YLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSI 337

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I++ Y  +E   
Sbjct: 338 PTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIINTYKRKETID 391

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K+S     +        +  P R     ++     L+      K      +     +   
Sbjct: 392 KYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAY 450

Query: 523 MQQIYPYGW 531
           ++++     
Sbjct: 451 LKELGVLKD 459


>gi|52548302|gb|AAU82151.1| type I restriction-modification system DNA methylase [uncultured
           archaeon GZfos11A10]
          Length = 704

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 103/587 (17%), Positives = 209/587 (35%), Gaps = 83/587 (14%)

Query: 11  LANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--------EKYL 60
           +   +W  A+ L    ++   ++   ++    LR         +  +         +   
Sbjct: 10  IEKRLWGAADTLRANSNYASNEYFLPVMGLVFLRHAYSRYLAVKDGIEANLPTRDGKTRA 69

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                     +        F +      S   +      +ES I    DN + +    ++
Sbjct: 70  LLKEDFSRQSAIFLQPNAQFDHLVALPDSEDRAKAIIWAMES-IEGDYDNLRGVLPKSEY 128

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                      +L ++ +  +        V   V   IYE+ + +F  + +    +F TP
Sbjct: 129 QEL-----DNDVLGQLLRTLN--PDELKRVSGDVFGRIYEYFLTQFADQKAHDGGEFFTP 181

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V L   +L                T+ DP CG+GG    +   VA+ G        L
Sbjct: 182 ISLVSLIAHVLDPE-----------SGTVLDPACGSGGMFVQSARIVAEHG--QNPTDRL 228

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNP 299
              G E    T  +    + +  LE D        IQ+  T  +D      +  + ++NP
Sbjct: 229 TFRGLEKNATTIRLAKMNLAVHGLEGD--------IQKAITYYEDPHELVGKADFVMANP 280

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGG 353
           PF               K     R   GLP      K+S+G+ +++ +  + L       
Sbjct: 281 PFNVDE-------IDADKVKTDVRLPFGLPGVNKKDKVSNGNYVWISYFYSYLNEK---- 329

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+SS       AG GE+++R+ L+E   ++ +VA+ ++ F+   +   LW L+  
Sbjct: 330 GRAGFVMSSQA---SSAGGGEAKVRQKLVETGDVDVMVAIRSNFFYTRTVPCELWFLNRD 386

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSRENGKFSRMLDY 470
           K E  R KV +I+A +++   R   +K    + +Q++    I+ +Y  +      + LD 
Sbjct: 387 KPEAHRDKVLMIDARNIY---RKVTRKIYDFSPEQQQNLLAIVWLYRGQTE----KYLDL 439

Query: 471 RTFGYRRIKVLRPLRMSFILDKTG------------LARLEADITWRKLSPLHQSFWLDI 518
            + GY R  +          D++G            L  L + +     +    +   ++
Sbjct: 440 VS-GYCRHTLDEGAGCFSTEDESGETIQPLPDFAAALDTLTSTLQPFLSTLADNAAHAEV 498

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            K ++  +  +       ++++   EA   + K +   +   ++   
Sbjct: 499 QKELVDALPAFHADVEAFQQALTEQEAAWKRQKTTNGDLKQAVDCLA 545


>gi|496158|gb|AAA65633.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis]
          Length = 520

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 186/498 (37%), Gaps = 70/498 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++  L   + K  + L    + T++   I+ F   + L    E      +E+      S
Sbjct: 2   SNSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61

Query: 66  NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109
             D         +  +      F+   +YS   +        N    +E     I S + 
Sbjct: 62  EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121

Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                     K +F + DFS+     I   EK   +  I K  + + L  D V      N
Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIKEINTLNLSMDEVD--HFGN 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  F S+  + A +F TP  V  L   ++              I   YDP CG+G
Sbjct: 179 TYEYLLSEFASDTGKKAGEFYTPSKVSELLVKIV--------SHGKNKINKAYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L    N V               +GQE++  T+ +     ++R +          +++
Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276

Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            G TL   L       F   ++NPPF +KW   ++  +    N       P L   S   
Sbjct: 277 SGDTLINPLHIEEEGSFDCIVANPPFSQKWNPTQELSKDRRYNSY-----PSLAPKSYAD 331

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL H+   +       G  A V S   L        E +IR+++++ + I+ I+ LP 
Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRKSPK-AEEDIRKYIIDKNYIDTIIFLPP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+I + + +    K    + ++ +INAT  + + +    K+  ++D+   +I   
Sbjct: 388 NLFYNTSIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442

Query: 456 YVS-RENGKFSRMLDYRT 472
           +   RE   FS+ + Y  
Sbjct: 443 WKEKREEENFSKYISYED 460


>gi|15829149|ref|NP_326509.1| restriction-modification enzyme subunit M1 [Mycoplasma pulmonis UAB
           CTIP]
 gi|14090093|emb|CAC13851.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M1 [Mycoplasma pulmonis]
          Length = 520

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 105/498 (21%), Positives = 186/498 (37%), Gaps = 70/498 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            ++  L   + K  + L    + T++   I+ F   + L    E      +E+      S
Sbjct: 2   SNSKELIAVVKKICDQLRSKMEVTEYRDYIMGFLFFKYLSEQSEKNFEEFKERVDYIKYS 61

Query: 66  NIDL--------ESFVKVAGYSFYNTSEYSLSTLGS-----TNTRNNLESY---IASFSD 109
             D         +  +      F+   +YS   +        N    +E     I S + 
Sbjct: 62  EFDENHEQFKKIKEIIIQNDDDFFLAYKYSFQNVVDMMNQGKNVIPTIEESFNKIESINS 121

Query: 110 NA--------KAIFEDFDFSST----IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                     K +F + DFS+     I   EK   +  I K  + + L  D V      N
Sbjct: 122 ELNDEKKEFFKDLFTNIDFSNKNLGNIDE-EKEKTIQLIIKEINTLNLSMDEVD--HFGN 178

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE+L+  F S+  + A +F TP  V  L   ++              I   YDP CG+G
Sbjct: 179 TYEYLLSEFASDTGKKAGEFYTPSKVAELLVKIV--------SHGKNKINKAYDPACGSG 230

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L    N V               +GQE++  T+ +     ++R +          +++
Sbjct: 231 SLLIKLANKVGKYNK---------IYGQEVKTATYNLARMNFILRGVPFSKL-----DLR 276

Query: 278 QGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            G TL   L       F   ++NPPF +KW   ++  +    N       P L   S   
Sbjct: 277 SGDTLINPLHIEEEGSFDCIVANPPFSQKWNPTQELSKDRRYNPY-----PSLAPKSYAD 331

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL H+   +       G  A V S   L        E +IR+++++ + I+ I+ LP 
Sbjct: 332 FAFLQHMLFHVNKD---NGIIASVFSLGILSRKNPK-AEEDIRKYIVDENYIDTIIFLPP 387

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +LF+ T+I + + +    K    + ++ +INAT  + + +    K+  ++D+   +I   
Sbjct: 388 NLFYNTSIESCIIVARKNKPTNDK-RIFMINATKEFQNAK----KQNTLSDENINRIFSA 442

Query: 456 YVS-RENGKFSRMLDYRT 472
           +   RE   FS+ + Y  
Sbjct: 443 WKEKREEENFSKYISYED 460


>gi|282915751|ref|ZP_06323521.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
 gi|282320380|gb|EFB50720.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus D139]
          Length = 460

 Score =  244 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 195/489 (39%), Gaps = 50/489 (10%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E  R  ++ + +   G  I+ +            T ++ +  L +T  R    S +   S
Sbjct: 15  EEYREDLKAELIDQVGYFIEPQDLFSAM-IREIETQDFDIEHL-ATAIRKVETSTLGEES 72

Query: 109 DN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           +N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE LI 
Sbjct: 73  ENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIG 132

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L    
Sbjct: 133 RFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG 184

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     K   +    GQE    T+ +    ML+  +     R  + +I+   TL  
Sbjct: 185 ----------KETKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLEN 229

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F G  F   ++NPP+  KW  D      E  +G        L   S     F+ H+ +
Sbjct: 230 PAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVH 284

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNI 403
            L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I
Sbjct: 285 YLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSI 337

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
            T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E   
Sbjct: 338 PTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETID 391

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K+S     +        +  P R     ++     L+      K      +     +   
Sbjct: 392 KYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINEY 450

Query: 523 MQQIYPYGW 531
           ++++     
Sbjct: 451 LKELGVLKD 459


>gi|323441216|gb|EGA98897.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus O46]
          Length = 355

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 101/390 (25%), Positives = 170/390 (43%), Gaps = 48/390 (12%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICK 138
           T ++ +  L +T  R    S +   S+N    +F D D SST       E+  L+ K+  
Sbjct: 7   TQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMV 65

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           N   +      +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D  
Sbjct: 66  NLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD-- 123

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                  +R +YDPTCG+G  L              K   +    GQE    T+ +    
Sbjct: 124 ------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMN 167

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  D      E  +
Sbjct: 168 MLLHDV-----RYENFDIRNDDTLENPAFLGTTFDAVIANPPYSAKWTADSKFENDERFS 222

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           G        L   S     F+ H+ + L+      G  A+VL    LF G A   E  IR
Sbjct: 223 GY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIR 270

Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +      
Sbjct: 271 RYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK---- 324

Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSR 466
           GK +  ++D Q  +I++ Y  +E   K+S 
Sbjct: 325 GKNQNHLSDTQVERIINTYKGKETIDKYSY 354


>gi|194324118|ref|ZP_03057892.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
 gi|194321565|gb|EDX19049.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
          Length = 345

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 128/386 (33%), Gaps = 50/386 (12%)

Query: 1   MTEFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   + +  +   +WK A+ L  +    ++  V+L    L+ +  + E   + +  + 
Sbjct: 1   MAKAKKTVSESIEVTLWKAADKLRKNIDAAEYKHVVLGLVFLKYISDSFEERYTEL--QS 58

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112
             +       E         F+  ++   S L +      +          I   +++ K
Sbjct: 59  EEWADPEDKDEYLES---NIFFVPTKARWSYLLANAKLPEIGKLVDEAMDEIERENNSLK 115

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVS 171
            +         +     +  L ++      I +    +    V+ +++E+ +  F     
Sbjct: 116 GVLPKVYARDNL----NSTTLGELIDIIGNISIGDTQSRSADVLGHVFEYFLGEFALAEG 171

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ VV L   +L                 ++DP CG+GG    +   V    
Sbjct: 172 KQGGQFYTPKSVVELLVKML-----------EPYKGRVFDPCCGSGGMFVQSEKFVESHQ 220

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +GQE    T  +C   + IR ++S   +  S+      +   D     +
Sbjct: 221 GQIN---DISIYGQESNQTTWRLCKMNLAIRGIDSSQVKWNSEG-----SFLNDAHKDLK 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             Y ++NPPF       +             R+  G P   + +  ++ H    L     
Sbjct: 273 ADYIIANPPFNISDWSGE-------LLRNDARWQYGTPPAGNANYAWIQHFLYHLAPT-- 323

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEI 377
             G A  VL+   L +    SGE + 
Sbjct: 324 --GVAGFVLAKGALTSN--TSGEGDT 345


>gi|158421618|ref|YP_001527845.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
 gi|158342861|gb|ABW35147.1| N-6 DNA methylase [Deinococcus geothermalis DSM 11300]
          Length = 610

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 182/490 (37%), Gaps = 69/490 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W  A  + G+ +   F   +LP   L+RL    +     + E+Y     + 
Sbjct: 94  TTKPMEQMLWDAACSIRGEKEAAKFKDYLLPLLFLKRLSDVFDDEIERLAEEYGDRATAL 153

Query: 67  IDLESFVKVAGYSFYNT-----------SEYSLSTLG------STNTRNNLESYIAS--- 106
              ES    +   FY               +              +   +L   + +   
Sbjct: 154 EIAES--DHSLLRFYLPPEARWTVISGREPFDWPRDVQGRSTAPRDIGEHLTRAVRAVVK 211

Query: 107 FSDNAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHL 162
            + +   + +  DF       R      L  + + FS          V    +   YE+L
Sbjct: 212 HNPSLSGVIDVVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYL 271

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R+F     + A +F TP +V  L   +L           P    T +D  CG+ G L  
Sbjct: 272 LRKFAEGSGQSAGEFFTPTEVGFLMAHIL----------RPKPGETCHDYACGSAGLLIK 321

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                 +     ++P      GQEL+ E++AV     +I  +E +          +G T+
Sbjct: 322 LQLVARELDPTSRVPLK--LSGQELQAESYAVAQMNAIIHDMEVEL--------ARGDTM 371

Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSM 336
               F       ++    ++NP + + +  D         +    RF   G      G  
Sbjct: 372 INPKFRNADGSIRQHDIVVANPMWNQSFAPDI------FAHDPFDRFRTAGGITSGKGDW 425

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVAL 393
            +L H    +       GRAA+VL +  +  G     E +   IR+W +E DLI+ ++ L
Sbjct: 426 AWLQHTLACMNDH----GRAAVVLDTGAVTRGSGSKNEDKERTIRKWFVEQDLIDGVILL 481

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P +LF+ T  A  + +L+ RK   R+GK+ L+NA+  +    ++G+ +  + ++  R + 
Sbjct: 482 PENLFYNTTAAGVIVVLNKRKPAARKGKIVLLNASRHF----SKGRPKNYLPEEDLRPLA 537

Query: 454 DIYVSRENGK 463
            +Y+  E   
Sbjct: 538 AMYLKGEPVD 547


>gi|229548133|ref|ZP_04436858.1| possible adenine specific DNA-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|256958291|ref|ZP_05562462.1| type I restriction enzyme M protein [Enterococcus faecalis DS5]
 gi|257091258|ref|ZP_05585619.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|307274413|ref|ZP_07555597.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2134]
 gi|312905317|ref|ZP_07764432.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|229306739|gb|EEN72735.1| possible adenine specific DNA-methyltransferase [Enterococcus
           faecalis ATCC 29200]
 gi|256948787|gb|EEU65419.1| type I restriction enzyme M protein [Enterococcus faecalis DS5]
 gi|257000070|gb|EEU86590.1| type I restriction-modification system M subunit [Enterococcus
           faecalis CH188]
 gi|295114355|emb|CBL32992.1| type I restriction system adenine methylase (hsdM) [Enterococcus
           sp. 7L76]
 gi|306508923|gb|EFM78009.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2134]
 gi|310631341|gb|EFQ14624.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0635]
 gi|315036579|gb|EFT48511.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0027]
 gi|315145850|gb|EFT89866.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2141]
 gi|315162496|gb|EFU06513.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0645]
 gi|315578596|gb|EFU90787.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX0630]
          Length = 530

 Score =  243 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/538 (16%), Positives = 182/538 (33%), Gaps = 68/538 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73
           W       G    T +   I      + L          V   E +      N   ++  
Sbjct: 12  WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQN-PSKALE 70

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119
            +     Y                 +      +      F+         + + IF+   
Sbjct: 71  YMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130

Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F S         +A ++  + +  S  E       D  +S+IYE+L+ +F + ++     
Sbjct: 131 FDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATVLASDMGQ 189

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP+++ ++   +L    +           ++YDPT G+G  L    +++ +      I
Sbjct: 190 YYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASYMKNSHKRGMI 243

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------- 289
                  GQE +   + +    +++  +E +        I    TL  D   G       
Sbjct: 244 K----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDGVVDGKDN 294

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLE 347
            + F   ++NPP+   W              +  R+   G+   +     FL+H    L 
Sbjct: 295 PRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYAFLLHCLYHL- 345

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR AI+L    LF G A   E  IR+ L++   IE ++  P  LF  T+I   +
Sbjct: 346 ---EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCV 399

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            IL   +T      +  ++A+  +  ++    K+  +  +   +I+D  V R+  + +S 
Sbjct: 400 LILRKNRTAS---DILFVDASREFEKLK----KQNHLRPEDVDKIVDTVVQRKEIEKYSH 452

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +            +  P  +    ++  +  +  +   +  +   +    ++L  +  
Sbjct: 453 LATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEAELLAMLDD 510


>gi|294155919|ref|YP_003560303.1| type I restriction-modification system, methyltransferase
           [Mycoplasma crocodyli MP145]
 gi|291600214|gb|ADE19710.1| type I restriction-modification system, methyltransferase
           [Mycoplasma crocodyli MP145]
          Length = 523

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 106/544 (19%), Positives = 203/544 (37%), Gaps = 67/544 (12%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA-VREKYLAFGGSNIDL 69
           L N +W  A  + G    ++F +V L     R +             + Y      +I++
Sbjct: 13  LHNKLWDLANKVRGKINASEFQQVFLGILFYRFISEYFVDKVEENGLKDYSNKNDDDIEV 72

Query: 70  ESFVKVAGY--SFYNTSEYSLSTLG-----STNTRNNLESYIASF--SDNAKA---IFE- 116
               K       F+    +    L      + N   ++     S   S N      I E 
Sbjct: 73  LKMKKDLPDLIGFFIKPSHLFVNLSKDVHLNENINIDINDIFNSIVSSANINDSENILEG 132

Query: 117 -----------DFDFSSTIARLEKAGLLYKICKNFSGIEL--HPDTVPDRVMSNIYEHLI 163
                      + + ++     +K  ++ K     + I+     D        + YE+LI
Sbjct: 133 TFPNFNNLNFLNINNNNENQLKKKNNIITKTILTVAEIDFGSKFDDHSIDTFGDAYEYLI 192

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +   +   +F TP++V      + L         +   I ++YDPTCG+G  L   
Sbjct: 193 GMYAASGGKSGGEFFTPQEVSKFLANVTLVYK------NSKDIYSVYDPTCGSGSLLLKF 246

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +          P L   GQE  P T ++    ++I  +E D       +++ G TL+
Sbjct: 247 KKIL--------NNPYLHFSGQESNPTTFSLSKMNLIIHGVEFDKI-----DLKCGDTLN 293

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMH 341
             L   K+F   +SNPP+   WE        E       RF   P L   S+  + F++H
Sbjct: 294 DPLHLEKKFDVVVSNPPYSIAWEDY-----NETSIRSDERFNIVPTLMPKSNSDLGFVLH 348

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L+      G AAIV      +       E  IR++L+EN+ IEAI+ +P ++FF T
Sbjct: 349 SLYSLDKK----GVAAIVCFPGMFYRDN--ESEVNIRKYLVENNFIEAIIVMPNNMFFGT 402

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I+  + +L+  K  +    +  ++A+  +        K+  +++     +L I   R++
Sbjct: 403 SISVNIMVLNKNKQTK---DILFVDASSHFYKD----GKKNKMSEQNIENVLKIVKDRKD 455

Query: 462 GKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            +  S+ +    F  + + +           K  +  +  +    +++  +Q     I K
Sbjct: 456 IENVSKPVANEFFLDKSVNLSPDRFFKKEEVKEEIDIINLNKQLNEITSKNQKLREQIKK 515

Query: 521 PMMQ 524
            + +
Sbjct: 516 LIFE 519


>gi|300853531|ref|YP_003778515.1| restriction-modification system [Clostridium ljungdahlii DSM 13528]
 gi|300433646|gb|ADK13413.1| restriction-modification system [Clostridium ljungdahlii DSM 13528]
          Length = 901

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 100/485 (20%), Positives = 178/485 (36%), Gaps = 78/485 (16%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
           +    +  ++   IL F   + L    E   +  R++ L         E  VK A +   
Sbjct: 1   MRSKIEANEYKDFILGFIFYKYLS---EKEVAFFRKERLTDADIEKVTEDDVKYASHVRE 57

Query: 82  NTSEY--------SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA--- 130
           N   +        +    G+    +N+   +++F  N   ++    F      L+     
Sbjct: 58  NLGYFIAYENLFSTWLKKGNDFDISNVRDALSAFDRNIDDVYRKV-FEKIFNTLQTGLSK 116

Query: 131 ------------GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                         L K+ +               V+  IYE+LI  F +   + A +F 
Sbjct: 117 LGETAQAQTKAVKSLLKLIRKI----PMDGKQDYDVLGFIYEYLISMFAANAGKKAGEFY 172

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +V  L + ++ +               +YDPT G+G  L +  N  A          
Sbjct: 173 TPHEVSVLMSEIIAEHLKNR------KQIKIYDPTSGSGSLLINIGNSAAKFIDGENKID 226

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------TGKRF 292
               + QEL+  T+ +    +++R +          N++ G TL  D          K +
Sbjct: 227 ---YYAQELKENTYNLTRMNLVMRGISPANI-----NVRNGDTLEDDWPFFEDTDKDKTY 278

Query: 293 HYC-----LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            +      +SNPP+ +KW+      +  +K         G+   S     FL+H    L+
Sbjct: 279 KFIPVDAVVSNPPYSQKWDPSDKEFDPRYKY-------YGVAPKSKADYAFLLHDLYHLK 331

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   IVL    LF G     E +IR  L+E + I+AI+ LP ++FF T I T +
Sbjct: 332 DD----GIMTIVLPHGVLFRGGE---EGKIREKLIEKNRIDAIIGLPPNIFFGTGIPTII 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            +L   K       V +I+A+  +  +     K   +     ++I D   SRE+ + +S 
Sbjct: 385 MVL---KRIRPTSDVLIIDASKGFEKV----GKNNKLRACDIKKIADTVKSRESIEKYST 437

Query: 467 MLDYR 471
           ++   
Sbjct: 438 LVSKE 442


>gi|313678340|ref|YP_004056080.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
 gi|312950090|gb|ADR24685.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
          Length = 892

 Score =  243 bits (620), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 113/629 (17%), Positives = 220/629 (34%), Gaps = 104/629 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRL--------------ECALE 49
              +   L + IW  A  L    +  ++   +L     + L                 L+
Sbjct: 3   NKITKEKLGSKIWDAANQLRDKLEPHEYKDYVLGLVFYKFLCEKQTNYLIKNWITSDQLK 62

Query: 50  PTRSAVR------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              S               + Y +   + +D +         F + S    S L + N  
Sbjct: 63  YLDSKYLDNESNFNAIVSGDAYKSDYENLVDAKKDCIDENGYFIDYSNLFSSWLENKNEF 122

Query: 96  ----TRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIE 144
                +    ++  S +D  K++F+D    F   +++L     E+   +  +    + I 
Sbjct: 123 NIQKFQLAFNNFNNSVNDEHKSLFKDLFVKFERDLSKLGSDTNEQTKKISSLLDIINDIP 182

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    V+  IYE+LI RF S   + A +F TP  V  L + ++             
Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHKVSELMSKIIAYHLKDR------ 234

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            +  +YDPT G+G  L    +      +       +  + QEL+ E   +    ++++ +
Sbjct: 235 EVIKVYDPTSGSGSLLITIGHEFKKYNNGDSP---VSYYAQELKAEVFNLTRMNLIMKNI 291

Query: 265 ESDPRRDLSKNIQQGSTLSKDL--FTGKRF--------HYCLSNPPFGKKWEKDKDAVEK 314
                       + G TL +D   F    F           +SNPP+ +KW   + +++ 
Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFEDNDFSSYKHLSVDAVVSNPPYSQKWNSKEHSLDP 346

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            +          G+   S     FL+H    ++      G  AIVL    LF G     E
Sbjct: 347 RYVE-------YGIAPESKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN---SE 392

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L++   I+AI+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+   
Sbjct: 393 GQIRKNLIQKQQIDAIIGLPVNMFYGTEIPTIIMILKKHRSEK---DILFVDASKLYVK- 448

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
              G K+        ++I D+   R   +            RR+ +   ++  + L+ + 
Sbjct: 449 ---GDKKNEFTKSHVKKIADVVNHRIEIEN---------FSRRVSLDEIVQNDYNLNISR 496

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
              ++      +       +     + + +    +G       +  K N+    ++K  K
Sbjct: 497 Y--IDNFKRQEQYDLYSIMYGGISREELAKLDKFFGLFTGLKDKLFKLNDNNYYELKIPK 554

Query: 555 SFIVAFINA---FGRKDPRADPVTDVNGE 580
             I + IN                D  GE
Sbjct: 555 EDINSTINGERSVTEYKDS----FDKKGE 579


>gi|300861380|ref|ZP_07107466.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849172|gb|EFK76923.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TUSoD Ef11]
          Length = 530

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 87/538 (16%), Positives = 182/538 (33%), Gaps = 68/538 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73
           W       G    T +   I      + L          V   E +      N   ++  
Sbjct: 12  WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQN-PSKALE 70

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119
            +     Y                 +      +      F+         + + IF+   
Sbjct: 71  YMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130

Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F S         +A ++  + +  S  E       D  +S+IYE+L+ +F + ++     
Sbjct: 131 FDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATVLASDMGQ 189

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP+++ ++   +L    +           ++YDPT G+G  L    +++ +      I
Sbjct: 190 YYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASYMKNSHKRGMI 243

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------- 289
                  GQE +   + +    +++  +E +        I    TL  D   G       
Sbjct: 244 K----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDGVVDGKDN 294

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLE 347
            + F   ++NPP+   W              +  R+   G+   +     FL+H    L 
Sbjct: 295 PRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYAFLLHCLYHL- 345

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR AI+L    LF G A   E  IR+ L++   IE ++  P  LF  T+I   +
Sbjct: 346 ---EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCV 399

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            IL   +T      +  ++A+  +  ++    K+  +  +   +I+D  V R+  + +S 
Sbjct: 400 LILRKNRTAS---DILFVDASREFEKLK----KQNHLRPEDVDKIVDTVVQRKEIEKYSH 452

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +            +  P  +    ++  +  +  +   +  +   +    ++L  +  
Sbjct: 453 LATLDEIKENDYNLNIPRYVDTYEEELPVDLVALNNDIKNTNEEIKKVEAELLAMLDD 510


>gi|332661883|ref|YP_004451353.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332337380|gb|AEE54480.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 606

 Score =  242 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 92/487 (18%), Positives = 179/487 (36%), Gaps = 72/487 (14%)

Query: 4   FTGSA-ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
            T +    L + +W  A+ L    + K +++   IL    LR      +  +  +  +  
Sbjct: 1   MTATQLKELEDTLWSAADKLRAESNLKSSEYATPILGLIFLRFASIRYQRVKPEIEAELK 60

Query: 61  AFGGSNID-LESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSDNAK 112
           A   S +   E+ + +A   FY   E     L       +    ++     I  +     
Sbjct: 61  AQANSRMQQPEAEIAIAKCGFYLPPEAQYDYLLSLPEEADIAKAIKHAMEAIEQYKPELL 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                 ++       E   L   + K F+ I   P+     V   +YE+ +  F     +
Sbjct: 121 DSLPKDEYFKLYTT-EDRSLPKSLLKIFANI---PEDASGDVFGKVYEYFLAEFALAEGQ 176

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADC 230
           G  +F TP  VV L   ++                T++DP CG+GG    +   V     
Sbjct: 177 GGGEFFTPTSVVKLMVEVI-----------EPYQGTIFDPACGSGGMFVQSSYFVDRRRA 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
             H      L+ +G E   +T  +    + +  L  +        I+  ++  +D +   
Sbjct: 226 ELHDTDTKDLMVYGVEKTADTVKLARMNLAVNGLRGE--------IRPANSYYEDPYDSL 277

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP----------------KIS 332
            RF Y L+NPPF      D +    +H+     RF   G+P                 + 
Sbjct: 278 GRFDYVLANPPFNVD---DVNLDRVKHQ----PRFNAYGIPQNKGKSSKKGQDKDVNTVP 330

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + L++   A  L+      GRAA+V+++S      A + E++IR+ L+ + +I+A++ 
Sbjct: 331 NANYLWINLFATSLKPT----GRAALVMANSA---SDARNSEADIRQNLIRSGVIDAMLT 383

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP ++F+   +   LW     +      K+  ++A + +  +       R    +  + I
Sbjct: 384 LPKNMFYTVTLPATLWFFDKSRAGTEP-KILFVDARNTFRQVTRA---LREFTPEHIQNI 439

Query: 453 LDIYVSR 459
             I+   
Sbjct: 440 AVIFRLF 446


>gi|91775530|ref|YP_545286.1| XRE family transcriptional regulator [Methylobacillus flagellatus
           KT]
 gi|91709517|gb|ABE49445.1| transcriptional regulator, XRE family [Methylobacillus flagellatus
           KT]
          Length = 519

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 104/518 (20%), Positives = 185/518 (35%), Gaps = 82/518 (15%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              +W  A  + G+     F   +LP   L+RL    +     + E+Y     +    ES
Sbjct: 2   EQMLWDAACSIRGEKDAAKFKDYLLPLLFLKRLSDVFDDEIERLAEEYGDRATALEIAES 61

Query: 72  FVKVAGYSFYNTSEYSLSTL-----------------GSTNTRNNLESYIASF---SDNA 111
               +   FY   E   + +                    +   +L   + +    +   
Sbjct: 62  --DHSLLRFYLPPEARWAVISGRESFDWPLDDRGRPTAPRDIGEHLTKAVRAVVKQNPTL 119

Query: 112 KAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFG 167
             + +  DF       R      L  + + FS          V    +   YE+L+R+F 
Sbjct: 120 SGVIDVVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFA 179

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               + A +F TP +V  L   +L           P    T +D  CG+ G L       
Sbjct: 180 EGSGQSAGEFFTPTEVGFLMAHIL----------RPKPGETCHDYACGSAGLLIKLQLVA 229

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +     ++P      GQEL+ E++AV     +I  +E +          +G T+    F
Sbjct: 230 RELDPTSRVPLK--LSGQELQAESYAVAQMNAIIHDMEVEL--------ARGDTMINPKF 279

Query: 288 TGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMH 341
                        ++NP + + +  D         N    RF   G      G   +L H
Sbjct: 280 REASGKIRGHDIVVANPMWNQPFAADL------FANDPFDRFRTAGGITSGKGDWAWLQH 333

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE---IRRWLLENDLIEAIVALPTDLF 398
               +       GRAA+VL +  +  G     E +   IR+W +E DLI+ ++ LP +LF
Sbjct: 334 TLACMNDH----GRAAVVLDTGAVTRGSGSKNEDKERTIRKWFVEQDLIDGVILLPENLF 389

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T  A  + +LS RK   R+GK+ L+NA+  +     +G+ +  + ++  R +  +Y+ 
Sbjct: 390 YNTTAAGVIVVLSRRKPAARKGKIVLLNASRRF----KKGRPKNYLPEEDIRPLAAMYLK 445

Query: 459 RE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
            E   G+ +            I   +     + L  + 
Sbjct: 446 GEPVEGELAV-----------ITTEQAREADYNLSPSR 472


>gi|299822015|ref|ZP_07053902.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Listeria grayi DSM 20601]
 gi|299816643|gb|EFI83880.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Listeria grayi DSM 20601]
          Length = 531

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 91/555 (16%), Positives = 187/555 (33%), Gaps = 66/555 (11%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-KYLAFGGSNIDLES 71
           N +W       G    T +   I      + L         +V   +      S     S
Sbjct: 9   NKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATQWLESVLRGESWESIYSQDPARS 68

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFS--------DNAKAIFED 117
              +     Y     +  +        +      +      F+         + + IF+ 
Sbjct: 69  LDYMKKNLGYAIRPNNFFSDWKKAIEEDQFNIGLMTDTFGHFNQQIAFEAKSDFEGIFDG 128

Query: 118 FDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             F S         +A ++  + +  S  E          +S+IYE+L+ +F + ++   
Sbjct: 129 MRFDSADLGANAQARASVMISMIEVLSAPEFDLSGGD-DAISDIYEYLVAKFATVLASDM 187

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TP+++  +   +L    +           ++YDPT G+G  L    +++ +     
Sbjct: 188 GQYYTPKEISDVMAQILTFGREEA------EHFSIYDPTVGSGSLLLTTASYMKNSHKRG 241

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
            I       GQE +   + +    +++  +E +        I    TL  D   G     
Sbjct: 242 MIK----YFGQEKDATPYRLSRMNLMMHGVEYNDVS-----INHADTLKSDWPDGVVEGK 292

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANK 345
              + F   ++NPP+   W              +  R+   G+   +     FL+H    
Sbjct: 293 DNPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVAPKTKADYAFLLHCLYH 344

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       GR AI+L    LF G A   E  IR+ L++   IEA++  P  LF  T+I  
Sbjct: 345 L----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIEAVIGFPDKLFLNTSIPV 397

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + IL   + E     V  I+A+  +  ++N    ++ +  +   +I+D  V R+  + +
Sbjct: 398 CVLILRKNRVES---DVLFIDASKDFEKMKN----QKRLRPEDVAKIVDTVVHRKEMEKY 450

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +            +  P  +    ++  +  +E      K++   +    + L  + +
Sbjct: 451 AHIATLDEIKENDYNLNIPRYVDTFEEEEPIDIVEVSQEITKINGEIKQAESEFLSMLDE 510

Query: 525 QIYPYGWAESFVKES 539
                   +      
Sbjct: 511 LAVTPETKDLIEAAK 525


>gi|226223147|ref|YP_002757254.1| HsdM type IC modification subunit [Listeria monocytogenes
           Clip81459]
 gi|254993315|ref|ZP_05275505.1| HsdM type IC modification subunit [Listeria monocytogenes FSL
           J2-064]
 gi|225875609|emb|CAS04312.1| Putative HsdM type IC modification subunit [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 529

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 95/571 (16%), Positives = 194/571 (33%), Gaps = 74/571 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45
           M   T     +    W       G    T +   I      + L                
Sbjct: 1   MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56

Query: 46  --CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                               G  I    F      +  +T  +++  +  T T  N +  
Sbjct: 57  WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             + + + + IF+   F S         +A ++  + +  S  E       +  +S+IYE
Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +F + ++     + TP+++ ++   +L    + + K       +++DPT G+G  L
Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               +++     +     ++  +GQE +   + +    +++  +E +       NI    
Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278

Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331
           TL  D   G        + F   ++NPP+   W              +  R+   G+   
Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +     FL+H    L       GR AI+L    LF G     E  IR+ L++   IEAI+
Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAII 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
             P  LF  T I   + IL   + E     V  ++A+  +  I+    K+  +  +   +
Sbjct: 384 GFPEKLFLNTPIPVCVVILRKNRIES---DVLFVDASKGFEKIK----KQNNLRSEDVEK 436

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D  ++R+  + +S +            +  P  +    ++  +  +        L+  
Sbjct: 437 IVDTVINRKEIEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVALNAD 496

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            +    D L  + +        E        
Sbjct: 497 IKKAETDFLGLLDELAVTADTKEIIEATKAV 527


>gi|116871898|ref|YP_848679.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740776|emb|CAK19896.1| type I restriction enzyme M protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 529

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/559 (16%), Positives = 190/559 (33%), Gaps = 70/559 (12%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE-----------------CALEPTRSAV 55
             +W       G    T +   I      + L                            
Sbjct: 9   AKMWAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEKWESVYSQDSVKA 68

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                   G  I    F      +  +T  +++  +  T T  N +    + + + + IF
Sbjct: 69  LNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQVAFEAKN-DFEGIF 126

Query: 116 EDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +   F S         +A ++  + +  S  E       +  +S+IYE+L+ +F + ++ 
Sbjct: 127 DGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYEYLVAQFATVLAS 185

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               + TP+++ ++   +L    + + K       +++DPT G+G  L    +++     
Sbjct: 186 DMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLLLTTASYMK---- 235

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--- 289
           +     ++  +GQE +   + +    +++  +E +       NI    TL  D   G   
Sbjct: 236 NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHADTLESDWPDGVVD 290

Query: 290 -----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLA 343
                + F   ++NPP+   W              +  R+   G+   +     FL+H  
Sbjct: 291 GKDTPRMFDVVMANPPYSAHW--------NNKDREDDPRWREYGVSPKTKADYAFLLHCL 342

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L       GR AI+L    LF G     E  IR+ L++   IEAI+  P  LF    I
Sbjct: 343 YHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAIIGFPEKLFLNAAI 395

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-G 462
              + IL   + E     V  I+A+  +   +    K+  +  +   +I+D  ++R+   
Sbjct: 396 PVCVVILRKNRIES---DVLFIDASKEFEKTK----KQNSLRSEDVDKIVDTVINRKEIN 448

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           K+S +            +  P  +    ++  +  +        L+   +    D L  +
Sbjct: 449 KYSHVATLDEIKENDYNLNIPRYVDTFEEEETIDLVALGNEMVALNADIKKAETDFLGLL 508

Query: 523 MQQIYPYGWAESFVKESIK 541
            +        +        
Sbjct: 509 DELAVTTDTKDIIEATKAV 527


>gi|85711477|ref|ZP_01042535.1| N-6 DNA methylase [Idiomarina baltica OS145]
 gi|85694629|gb|EAQ32569.1| N-6 DNA methylase [Idiomarina baltica OS145]
          Length = 520

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 162/458 (35%), Gaps = 63/458 (13%)

Query: 15  IWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
           +W  A+ LW +   K  +F   +L    L+  +         +              +  
Sbjct: 10  LWAAADQLWANTGLKPAEFSAPVLGLIFLKYADKKYSAAEEKLGPVGSGGRRKVSKDDYL 69

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE---K 129
              A    +       S L S    +N+   I       +   E+ D    + R     +
Sbjct: 70  ---AEGVIFLPETARFSHLLSLTEGDNIGKAINDAMKAIED--ENPDLKGALPRTYTRLE 124

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             +L ++ K  +     P  +       +YE+ +  F  +  +    F TP  +V L   
Sbjct: 125 NWVLQELLKQLA-----PVDLSGDAFGKVYEYFLGNFALKEGQKGGVFYTPESIVKLIVE 179

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           ++                 ++DP CG+GG    + + V            +   G E + 
Sbjct: 180 II-----------EPYHGRIFDPACGSGGMFVHSADFVERHHKTAMDE--ISIFGTEKDQ 226

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT------GKRFHYCLSNPPFGK 303
            T  +    + +  L  D        ++  +T  +D            F + ++NPPF  
Sbjct: 227 TTVNLNKMNLAVHGLSGD--------VRVSNTYYEDPHGAVYKNGDGFFDFVMANPPFNV 278

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                   V+KE   G   RF  G+PK  + + L++      L+      GRA  V+++S
Sbjct: 279 S------GVDKERLEG-DPRFPFGVPKTDNANYLWIQLFYASLKPT----GRAGFVMANS 327

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKV 422
               G A   E  +R+ L+E+  ++ IV++  + F+   +   LW     K+E ERR KV
Sbjct: 328 A---GDARGSEQVVRQKLIESGAVDVIVSVGPNFFYTVTLPCTLWFFDRAKSETERRDKV 384

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV 457
             I+A  ++  I       R    +Q      I+ +Y 
Sbjct: 385 LFIDARHIYNQIDRA---HRDWLPEQVEFLANIVRLYR 419


>gi|119357510|ref|YP_912154.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354859|gb|ABL65730.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 662

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 104/505 (20%), Positives = 173/505 (34%), Gaps = 96/505 (19%)

Query: 2   TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EK 58
            + T +AA L   +W  A+ L      K  ++   +L    L   +      R+ +   K
Sbjct: 8   EKDTATAA-LEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAK 66

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
                GS +D  +     G   Y + E     L +     N+          I   +   
Sbjct: 67  SSTRRGSRVDDPAAYHAEG-VLYLSPEARFVYLLNRPEAENIGVMVNEAMRAIEKHNPQL 125

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             +     +      L  + LL ++ K  S I   P ++       IYE+ +  F     
Sbjct: 126 AGVLPKTYY------LFDSPLLKQLLKKVSEI---PSSMDYDAFGRIYEYFLGEFAMSEG 176

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G  +F TP  +V L T ++                 + DP CG+GG    +   VA   
Sbjct: 177 QGGGEFYTPVSIVRLLTEVI-----------EPYHGRILDPACGSGGMFVSSARFVAQH- 224

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK- 290
                   L  HG E   ET  +C   + +  LE       + N     +   D      
Sbjct: 225 -KQNPSAELSIHGIEKTDETGRLCRLNLAVHGLEGRIMHGGNVN-----SYYDDPHDATG 278

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLE 347
            F + L+NPPF        +AV+KE     +G   RF  GLP+  + + L++    + L 
Sbjct: 279 NFDFVLANPPFNV------NAVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSAL- 331

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  GRA  V+++S      A S E EIRR L+E+  ++ +VA+  ++F+   +   L
Sbjct: 332 ---NERGRAGFVMANSA---SDARSSEQEIRRQLIESRTVDVMVAVGPNMFYTVTLPCTL 385

Query: 408 WILSNRKT-------------------------------------EERRGKVQLINATDL 430
           W     K                                        R   V  I+A  +
Sbjct: 386 WFFDKAKARLSPPSSPALLPKVEGGEEDLPLSRRILTERDGEGNVPNRADTVLFIDARHI 445

Query: 431 WTSIRNEGKKRRIINDDQRRQILDI 455
           +   R   +  R     Q   + ++
Sbjct: 446 Y---RQVDRAHRDWTPAQIGFMANL 467


>gi|167752725|ref|ZP_02424852.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216]
 gi|167659794|gb|EDS03924.1| hypothetical protein ALIPUT_00985 [Alistipes putredinis DSM 17216]
          Length = 529

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/558 (18%), Positives = 204/558 (36%), Gaps = 59/558 (10%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV---REKY 59
                  +L   ++     L G    TD   ++L    L+ +    +  +  +     + 
Sbjct: 6   NKAVKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKEKIRHEIVEV 65

Query: 60  LAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLG---STNTRNNLESYIASFSDNAK 112
                ++       +   Y     F+ T E     L     T      ++ I +  DN  
Sbjct: 66  QGIHDTDFIELQLSRPNQYMQDGVFFLTDETFWDKLILTSPTGMAIAFDTAIKTLDDNEP 125

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +              + G+L  +    + I+         ++  +YE+ ++ F     +
Sbjct: 126 KLKNALPQQIFTKTALEPGVLKSVVDEINKIDPQ-KFNDHDLIGRVYEYFLQAFSINTDK 184

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V L  +L+                T+YDP CG+GG    A   +   G 
Sbjct: 185 EEGEFYTPHSIVELIASLI-----------EPFDGTVYDPCCGSGGMFVQAAKFIEAHGG 233

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           + K    +  +GQE EP T+ +    + IR +            +  ST S D     +F
Sbjct: 234 NTKA---VNVYGQESEPATYRLAKMNLAIRGISYHLGD------RAVSTFSDDQHKELKF 284

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
            Y ++NPPF  K   +    E         R+ G G+P  S+ +  +++H+ NKL +   
Sbjct: 285 DYIMANPPFNLKKYAEYGGFE------TDSRWQGYGVPPTSNANYAWILHILNKLNVSR- 337

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G A  +L++  L +        EIR+ L+E+D +EAI+ LP ++F+ T+I+  LWIL+
Sbjct: 338 --GIAGFLLANGALDDSDT----LEIRKLLIESDKVEAIIVLPRNMFYSTDISVTLWILN 391

Query: 412 NRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           N K            R G++  I+     ++I    KK   + +    ++  IY + +  
Sbjct: 392 NNKKGGPWHGRQLRNRTGEILFIDLRTWNSNI--YEKKYVRLTEADIDRVRQIYFNWQ-T 448

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +           Y   +     +   ++    +  ++ D      S L +    D    +
Sbjct: 449 ENFVEYAEPELYYAAHRDEIQGKGYSLVPSRYIEFIDRDTEIDYQSALSEM--SDKFNAL 506

Query: 523 MQQIYPYGWAESFVKESI 540
            ++            + +
Sbjct: 507 KKRWDANETELVNAFKIL 524


>gi|16799597|ref|NP_469865.1| hypothetical protein lin0522 [Listeria innocua Clip11262]
 gi|16412962|emb|CAC95754.1| lin0522 [Listeria innocua Clip11262]
          Length = 529

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 94/571 (16%), Positives = 195/571 (34%), Gaps = 74/571 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------------- 46
           M   T     +    W       G    T +   I      + L                
Sbjct: 1   MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56

Query: 47  ---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                               G  I    F      +  +T  +++  +  T T  N +  
Sbjct: 57  WENVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             + + + + IF+   F S         +A ++  + +  S  E       +  +S+IYE
Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +F + ++     + TP+++ ++   +L    + + K       +++DPT G+G  L
Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               +++     +     ++  +GQE +   + +    +++  +E +       NI    
Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278

Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331
           TL  D   G        + F   ++NPP+   W              +  R+   G+   
Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +     FL+H    L       GR AI+L    LF G     E  IR+ L++   IEAI+
Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAII 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
             P  LF  T+I   + IL   + E     +  ++A+  +  I+    K+  +  +   +
Sbjct: 384 GFPDKLFLNTSIPVCVVILRKNRIES---DILFVDASKGFEKIK----KQNNLRSEDVEK 436

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D  ++R+  + +S +            +  P  +    ++  +  +        L+  
Sbjct: 437 IVDTVINRKEIEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVTLNAD 496

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            +    D L  + +        E        
Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527


>gi|325912651|ref|ZP_08175034.1| type I restriction-modification system, M subunit [Lactobacillus
           iners UPII 60-B]
 gi|325478072|gb|EGC81201.1| type I restriction-modification system, M subunit [Lactobacillus
           iners UPII 60-B]
          Length = 895

 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 181/484 (37%), Gaps = 63/484 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W+    L G  + + +   +L     + +    +  R           
Sbjct: 1   MAVKKSELYSILWEACNKLRGGVEPSRYKDYVLVLLFFKYVSDRYKGKR-----FADFEV 55

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN--AKAIFEDFDFS 121
                 +  VK  G                 +    ++  I  F +N   K +  D  F+
Sbjct: 56  SEGASFDELVKACGKP---------------DVGERVDIIIQKFLENNQLKGLLPDVSFN 100

Query: 122 STIARLEKAGLLYK----ICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFGSEVSEGA 174
           +    L K   L      + K F    +   +     D ++ + YE+ + +F  E  +  
Sbjct: 101 NP-DELGKGKELVDKVSGLIKMFQNPAIDFKSNMASGDDIIGDAYEYFMMKFAQESGKSK 159

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP +V      L+          +      L+DP  G+G  L  A +   +  +  
Sbjct: 160 GQFYTPSEVSRTIARLIGIG---NIDVNVQRHYMLHDPAAGSGSLLIRAAD---EAPNRA 213

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
               I+  +GQE   +T  +     ++           +  I+  +TLS   +  +    
Sbjct: 214 DGNSIVDIYGQEKYTDTAGLAKMNFILHN-------KATGEIKAANTLSDPQYIDEFGEL 266

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F + + NPPF  K   D   V ++      G     +P   +G   + +H+   L+  
Sbjct: 267 TKFDFIVMNPPFSDKDWTDGIKVSEDKFKRFDG--YGAIPPEKNGDYAWFLHVLKALKPT 324

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+A I+L    LF G A   E  IR+ +++   I+ IV+LP +LF+ T I   + +
Sbjct: 325 ----GKAGIILPHGILFRGNA---EETIRKAIIKKKWIKGIVSLPANLFYGTGIPACIIL 377

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468
           +     ++R G +  I+A+D +   + +G K R + +    +I+  + +R   K +SR +
Sbjct: 378 VDKENADKREG-IFFIDASDGY---KKDGNKNR-LREQDIEKIVQTFNNRTEIKGYSRFV 432

Query: 469 DYRT 472
            +  
Sbjct: 433 SFEE 436


>gi|240948006|ref|ZP_04752424.1| type I restriction-modification system methyltransferase subunit
           like protein [Actinobacillus minor NM305]
 gi|240297676|gb|EER48150.1| type I restriction-modification system methyltransferase subunit
           like protein [Actinobacillus minor NM305]
          Length = 533

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 191/469 (40%), Gaps = 64/469 (13%)

Query: 20  EDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
             L G     +     ++    L+ +       R+ ++ +Y        + E+F + +  
Sbjct: 24  NALRGKVGGNEKNRDTVMGLVFLKFVGDKFTARRAEIQAQYPEI---FWENEAFYR-SEN 79

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFDFSSTIARLEKA 130
            FY +     S +    + +++   I +   + +         + ++F  +  I + E  
Sbjct: 80  VFYLSEHARWSYIVENASSDDIAIKIDTAMADIEERNPPLKGALPQNFYATLGIGKKE-- 137

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRDVVHLAT 188
             +  +    + ++         ++  + E+ ++ F  +    +   +F TP  +V L  
Sbjct: 138 --IKSLIDEINKLDN-NRFHEKDLIGRVQEYFLQVFAIDSGVGKEKGEFYTPSSIVELIA 194

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+                T+YDP CGTGG    ++  V +   + K    +   GQE  
Sbjct: 195 ELI-----------EPYNGTVYDPCCGTGGMFVQSLKFVENHQGNRK---NISIVGQESN 240

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P+T  +    + +R +  +            ST + D +   + +Y ++NPPF       
Sbjct: 241 PDTWRLAKMNLALRGIAHNLGESAV------STFTHDQWKDLKVNYIMANPPFNL----- 289

Query: 309 KDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                 +++  +  RF G  +P  S+ +  +++H+ +KL+      G A  +L++  L  
Sbjct: 290 -KDWRDQNELTDDPRFAGYAVPPKSNANYAWILHMLSKLDETD---GIAGFLLANGALNT 345

Query: 368 GRAG---SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------- 416
           G        E  IR+ L+END +EAI+ LP ++F+ T+I+  LWI++N K +        
Sbjct: 346 GGDKPDTDTEYAIRKQLIENDKVEAIIVLPREMFYSTDISVTLWIVNNNKKQRSLNGRQL 405

Query: 417 -ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             R+ ++  ++   L + I    KK   +   +  Q+ +IY + + GK 
Sbjct: 406 RNRQNEILFMDLRTLNSHI--YEKKYVQLTAQEISQVCEIYFNWQTGKN 452


>gi|291320525|ref|YP_003515789.1| type I restriction modification system modification (methylase)
           protein [Mycoplasma agalactiae]
 gi|290752860|emb|CBH40835.1| Modification (Methylase) protein of type Irestriction modification
           system [Mycoplasma agalactiae]
          Length = 892

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 182/510 (35%), Gaps = 86/510 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTL---------------------LR 42
              +   L + IW  A  L    +  ++   +L   L                     L+
Sbjct: 3   NKITKEKLGSKIWAAANKLRDKLEAYEYKDYVLGLILYKFLCEKQTDYLIKNWVSKDQLK 62

Query: 43  RLECALEPTRSAVREKY-----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--- 94
            L+             Y      A      D +         F + S+  ++ L +    
Sbjct: 63  YLDSKYLDNMPNFSAFYTGDNLEADYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSF 122

Query: 95  ---NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIE 144
              N +    ++  S +D  K++F+D    F   +++L     E+  ++  +    + I 
Sbjct: 123 NIQNFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGAETNEQTKVISDLLDIINDIP 182

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    V+  IYE+LI RF S   + A +F TP +V  L + ++             
Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKDR------ 234

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDPT G+G  L           S       +  + QEL+ E   +    ++++ +
Sbjct: 235 EFIKVYDPTSGSGSLLLTIGQEFKKYNSG---NSPVSYYAQELKAEVFNLTRMNLIMKNI 291

Query: 265 ESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                       + G TL +D           +        +SNPP+ + W  +K  ++ 
Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKHTLDP 346

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            +          G+   +     FL+H    ++      G  AIVL    LF G     E
Sbjct: 347 RYIE-------YGIAPKTKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN---SE 392

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L++   I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+   
Sbjct: 393 GQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVKE 449

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                K    +    ++I D+  +R   + 
Sbjct: 450 ----GKNNKFSKSHIKKIADVVNNRIEIEN 475


>gi|15964352|ref|NP_384705.1| putative modification enzyme transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|15073529|emb|CAC45171.1| Putative modification enzyme transmembrane protein [Sinorhizobium
           meliloti 1021]
          Length = 526

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 166/497 (33%), Gaps = 77/497 (15%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                 ++++ +W  A+ L         ++ + +L    LR  +         V  K   
Sbjct: 1   MAADLKTISDKLWTTADKLRANSGILPAEYARPVLGLLFLRHADERFSE----VEAKLSP 56

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAI 114
             GS I   S    A  + +   E   S L S     NL          I + +     +
Sbjct: 57  REGSRIRPGSEAYKAEGAIFLPPEARFSYLLSLPEGENLGKKLTAAMRDIEAKNPELADV 116

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                      +L    +L ++ +     EL P  +      ++YE+ +  F  E  +  
Sbjct: 117 LPK------TYQLIPDDVLVELLR-----ELQPLKISGDAFGHVYEYFMGNFAKETMQKG 165

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L   ++                 + DP CG+GG    + + V       
Sbjct: 166 GEFYTPSSIVRLIVEII-----------EPYHGRILDPACGSGGMFVHSADFVKRHQREP 214

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291
                   +G E   ET  +    + +  L        S  I    T    +F       
Sbjct: 215 DKEL--SIYGVERTRETWRLAQMNLAVHGL--------SGKILDADTYRDPVFEEVTPKK 264

Query: 292 -----------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                      F + ++NPPF          ++K        RF  G+P   + + L++ 
Sbjct: 265 DKDGRYEGSGGFDFVMANPPFNV------KELDKSKLLDVANRFPFGVPSADNANYLWIQ 318

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              ++L    N  GRA  V+++S      A   E EIRR L+E+  ++ IV++  + F  
Sbjct: 319 FFWSRL----NETGRAGFVMANSA---ADARGTEQEIRRKLIESGSVDVIVSVGPNFFLT 371

Query: 401 TNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             +   LW     K    R  +V  ++A  ++  I    +       +    I+ ++   
Sbjct: 372 VTLPCTLWFFDKGKATGPRADEVLFLDARHIFRQIDRAHRDFTEEQVEALANIVRLWRG- 430

Query: 460 ENGKF---SRMLDYRTF 473
           E  +F   S+      F
Sbjct: 431 EQPEFFTPSKAWLEEHF 447


>gi|291320531|ref|YP_003515795.1| type I restriction modification system Hsdm modification
           (methylase) protein [Mycoplasma agalactiae]
 gi|290752866|emb|CBH40841.1| Modification (Methylase) protein of type Irestriction modification
           system HsdM [Mycoplasma agalactiae]
          Length = 892

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 105/629 (16%), Positives = 211/629 (33%), Gaps = 104/629 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L + IW  A+ L    +  ++   +L     + L    E     + + ++   
Sbjct: 3   NKITKEKLGSKIWDAADKLRAKLEPHEYKDYVLGLVFYKFLC---EKQTDYLIKNWITKD 59

Query: 64  GSNIDLESFVK--VAGYSFYNTSEYS-----LSTLGSTNTRNN--LESYIASFSD----- 109
                   ++       +FY  +                   N     Y   FS      
Sbjct: 60  QLKYLDSKYLDNIPNFSAFYTGNNLEGDYEIFKDAKKECIDENGYFIDYSNLFSSWLENK 119

Query: 110 ---NAKA---IFEDFD-----------------FSSTIARL-----EKAGLLYKICKNFS 141
              N +     F +F+                 F   +++L     ++  ++  +    +
Sbjct: 120 NEFNIQKFQLAFNNFNNSVNDAYKSLFKDLLVKFERDLSKLGSDTNKQTEVISSLLDIIN 179

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I          V+  IYE+LI RF S   + A +F TP +V  L + ++          
Sbjct: 180 DIPSTNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKDR--- 234

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
               +  +YDPT G+G  L    +      +       +  + QEL+ E   +    +++
Sbjct: 235 ---EVIKVYDPTSGSGSLLITIGHEFKKYNNGDSP---VSYYAQELKTEVFNLTRMNLIM 288

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDA 311
           + +            + G TL +D           +        +SNPP+ +KW   + +
Sbjct: 289 KNISPTEIHA-----RNGDTLEQDWPMFENNDFSSYKHLSVDAVVSNPPYSQKWNSKEHS 343

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           ++  +          G+   S     FL+H    ++      G  AIVL    LF G   
Sbjct: 344 LDPRYVE-------YGIAPESKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN-- 390

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E +IR+ L++   I+ I+ LP ++F+ T I T + IL  R++E+    +  ++A+ L+
Sbjct: 391 -SEGQIRKNLIQKQQIDTIIGLPINMFYSTEIPTIIMILKKRRSEK---DILFVDASKLY 446

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
                 G K+   +    ++I D+  +R   +            RR+ +   ++  + L+
Sbjct: 447 VK----GDKKNKFSKSHVKKIADVVNNRIEIEN---------FSRRVSLDEIVQNDYNLN 493

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
            +    ++      K               + +    +        +  K N     ++K
Sbjct: 494 ISRY--IDNFKKQEKYDLYSLMHGGISRDELAKLDKFFDLFTGLKDKLFKLNSNNYYELK 551

Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGE 580
                I + IN             D  GE
Sbjct: 552 IPNEDINSTING-EWSVTEYKKSFDKKGE 579


>gi|302346748|ref|YP_003815046.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
 gi|302150375|gb|ADK96636.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica ATCC 25845]
          Length = 558

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 182/486 (37%), Gaps = 65/486 (13%)

Query: 4   FTGS-AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
            T +    L   +W++A+ L          + + IL    LR  +   +  + A+   Y 
Sbjct: 1   MTSTELKDLEGRLWQSADMLRAGAHLAANKYSQPILGLIFLRYADVLFKQHKEAIDTAYN 60

Query: 61  AFGGSNIDLES-FVKVAGYSFYNTS--EYSLSTLGSTNTRNNL-----ESYIASFSDNAK 112
            + G+ ++     + +    F+      +        + +  L        I   +    
Sbjct: 61  EYKGTRMERSYKDIAIEKCGFFLPECAYFDYLNDAPDDAQKALLVKAAMEAIEHENPRMD 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +    +    +   E+  LL +I + F  I   P+ +   +   IYE+ +  F     +
Sbjct: 121 GVLPK-EVYGQLVPEEEPELLSRIVRVFKDI---PENISIDIFGQIYEYFLGNFALAEGQ 176

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           G   F TP  VV     +L               +   DP CG+GG    A  ++    +
Sbjct: 177 GGGAFYTPASVVQYMVEVLQPATGD---------KKFLDPACGSGGMFVQAARYMHRHNT 227

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291
            ++       +G E EP+T  +    +L+  +  +        I + ++   D +    +
Sbjct: 228 SNEQMMNFRCYGVEKEPDTVKLAKMNLLLNNVRGE--------IMEANSFYSDPYNAVGQ 279

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK---------------ISDGS 335
           F Y ++NPPF       +   +         RF   G+P+               + + +
Sbjct: 280 FDYVMANPPFNVDEVVVERVTD-------DARFNTYGVPRNKTKSAKKASDKKETVPNAN 332

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L++ + A  L       G+AA+V+++S      AG  E EIR+ ++E+ +I  +V LP+
Sbjct: 333 YLWIGYFATALNEQ----GKAALVMANSA---SDAGGSELEIRKKMIEDGIISQMVTLPS 385

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           ++F    +   LW  + ++ +  + ++  I+A +++T +    +K           I  +
Sbjct: 386 NMFSTVTLPATLWFFNKKRPK--KDEILFIDARNIFTQVDRAHRKFSDEQVKNLGIISRL 443

Query: 456 YVSREN 461
           Y    +
Sbjct: 444 YEGDSD 449


>gi|148825871|ref|YP_001290624.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE]
 gi|148716031|gb|ABQ98241.1| translation initiation factor IF-2 [Haemophilus influenzae PittEE]
          Length = 443

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 153/450 (34%), Gaps = 56/450 (12%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP---- 151
             +     I   ++  K + +                L  +   FS       T      
Sbjct: 35  IDDAF-DAIEKDNEKLKGVLQRIS-----GYAVNEDTLRGLIILFSDTHFTRPTYNGEPV 88

Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + RF     +    + TP+ +V L   +L                
Sbjct: 89  HLGAKDILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPYSG 137

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR ++ D
Sbjct: 138 RVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGIDYD 194

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +  +       + ++     K+  + ++NPPF                  +  R+  G
Sbjct: 195 FGKYNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDPRWAYG 241

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  +L+
Sbjct: 242 TPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKGIINANLV 295

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R    D
Sbjct: 296 ECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFTAD 350

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRK 506
              +I +   + +    S   + +    +   +       F+L         E +     
Sbjct: 351 DIAKIANTLHAWQK---SDGYEDQAAFCKSTTLEEIKDNDFVLTPGRYVGTAEQEDDGVP 407

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            +   Q+    + +   +        +  +
Sbjct: 408 FAEKMQNLTALLKEQFAKSAELEAEIKKNL 437


>gi|313898150|ref|ZP_07831689.1| putative type I restriction-modification system, M subunit
           [Clostridium sp. HGF2]
 gi|312957178|gb|EFR38807.1| putative type I restriction-modification system, M subunit
           [Clostridium sp. HGF2]
          Length = 538

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 97/500 (19%), Positives = 192/500 (38%), Gaps = 62/500 (12%)

Query: 1   MTEFTGSAAS----LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M   T +       L   +W     L G          ++    L+      E  R  + 
Sbjct: 1   MARATKTKKEVEVSLETVLWNCRVALRGVGTTEKNRDAVIGLVFLKFAGDKFEKRRKELL 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA--- 113
           ++Y            +  V    FY       S +    + N++   I     + +    
Sbjct: 61  DQYGDISAFLEKPSFYNAV--NVFYLKETARWSYIVKNASANDIAIIIDQAMADIEESNP 118

Query: 114 -IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +      +           +  +  N + I+       + ++  +YE+ ++ + +  ++
Sbjct: 119 PLKGALTLNLFATLGADKAKIKDLIDNVNQID-EKRFQEEDLIGRVYEYFLQIYAASGTK 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  VV L   ++                T+YDP CG+GG    +M  V     
Sbjct: 178 EDGEFYTPACVVKLIAEMI-----------EPYSGTVYDPCCGSGGMFVQSMKFVDRHNG 226

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +      +   GQE + ET  +C   + IR +  +         +  ST ++DL   K+ 
Sbjct: 227 N---RQKISIIGQESQAETWRLCKMNLAIRGIAHNLGE------KNASTFTEDLHKDKKV 277

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG----LPKISDGSMLFLMHLANKLEL 348
            + ++NPPF  K         KE +     RF       +P +S+ +  +++H+ NKL++
Sbjct: 278 DFIMANPPFNLKN------WRKEDELVGDPRFMKAGFSVMPPVSNANYAWILHMLNKLDV 331

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G A  +L++  L    A   E  +R+ L+E D +EAI+ LP D+F+  +++  LW
Sbjct: 332 NH---GIAGFLLANGAL---EADGVEYTLRKELIEKDKVEAIIVLPRDMFYTVDLSCTLW 385

Query: 409 ILSNRKTE---------ERRGKVQLINA------TDLWTSIRNEGKKRRIINDDQRRQIL 453
           I++  K           +R  ++  ++       ++     +N+ KK+ ++ D+Q  QI 
Sbjct: 386 IMNMNKKAVVVNGRRLRDRTSEILFMDLRTWNGNSEEIVIDKNKKKKKTVLTDEQISQIK 445

Query: 454 DIYVSRENGKFSRMLDYRTF 473
            +Y S ++ +     D   F
Sbjct: 446 AVYNSWQSDESDEYKDVPEF 465


>gi|257088129|ref|ZP_05582490.1| type I restriction enzyme M protein [Enterococcus faecalis D6]
 gi|256996159|gb|EEU83461.1| type I restriction enzyme M protein [Enterococcus faecalis D6]
 gi|315026886|gb|EFT38818.1| type I restriction-modification system, M subunit [Enterococcus
           faecalis TX2137]
          Length = 530

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 87/538 (16%), Positives = 182/538 (33%), Gaps = 68/538 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73
           W       G    T +   I      + L          V   E +      N   ++  
Sbjct: 12  WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATRWLDDVTRGETWENIYAQN-PSKALE 70

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119
            +     Y                 +      +      F+         + + IF+   
Sbjct: 71  YMQKNLGYAIQPNDFFDDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130

Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F S         +A ++  + +  S  E       D  +S+IYE+L+ +F + ++     
Sbjct: 131 FDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQFATVLASDMGQ 189

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP+++ ++   +L    +           ++YDPT G+G  L    +++ +      I
Sbjct: 190 YYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASYMKNSHKRGMI 243

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------- 289
                  GQE +   + +    +++  +E +        I    TL  D   G       
Sbjct: 244 K----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDWPDGVVDGKDN 294

Query: 290 -KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLE 347
            + F   ++NPP+   W              +  R+   G+   +     FL+H    L 
Sbjct: 295 PRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYAFLLHCLYHL- 345

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR AI+L    LF G A   E  IR+ L++   IE ++  P  LF  T+I   +
Sbjct: 346 ---EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKLFLNTSIPVCV 399

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            IL   +T      +  ++A+  +  ++    K+  +  +   +I+D  V R+  + +S 
Sbjct: 400 LILRKNRTAS---DILFVDASREFEKLK----KQNHLRLEDVDKIVDTVVQRKEIEKYSH 452

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +            +  P  +    ++  +  +  +   +  +   +    ++L  +  
Sbjct: 453 LATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEAELLSMLDD 510


>gi|284800797|ref|YP_003412662.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5578]
 gi|284993983|ref|YP_003415751.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5923]
 gi|284056359|gb|ADB67300.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5578]
 gi|284059450|gb|ADB70389.1| type I restriction enzyme M protein [Listeria monocytogenes
           08-5923]
          Length = 529

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 93/571 (16%), Positives = 194/571 (33%), Gaps = 74/571 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45
           M   T     +    W       G    T +   I      + L                
Sbjct: 1   MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56

Query: 46  --CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                               G  I    F      +  +   +++  +  T T  N +  
Sbjct: 57  WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DRDRFNIGMMTDTFTHFNQQIA 115

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             + + + + IF+   F S         +A ++  + +  S  E       +  +S+IYE
Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +F + ++     + TP+++ ++   +L    + + K       +++DPT G+G  L
Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               +++     +     ++  +GQE +   + +    +++  +E +       NI    
Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278

Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331
           TL  D   G        + F   ++NPP+   W              +  R+   G+   
Sbjct: 279 TLESDWPDGVVEGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +     FL+H    L       GR AI+L    LF G     E  IR+ L++   IEAI+
Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIEAII 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
             P  LF  T+I   + IL   + E     +  ++A+  +  I+    K+  +  +   +
Sbjct: 384 GFPDKLFLNTSIPVCVVILRKNRIES---DILFVDASKGFEKIK----KQNNLRSEDVEK 436

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D  ++R+  + +S +            +  P  +    ++  +  +        L+  
Sbjct: 437 IVDTVINRKEIEKYSHVATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVTLNAD 496

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            +    D L  + +        E        
Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527


>gi|313610497|gb|EFR85650.1| type I restriction-modification system, M subunit [Listeria
           monocytogenes FSL F2-208]
          Length = 529

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 94/571 (16%), Positives = 191/571 (33%), Gaps = 74/571 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE--------------- 45
           M   T     +    W       G    T +   I      + L                
Sbjct: 1   MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATYWLNGVLRGKT 56

Query: 46  --CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                               G  I    F      +  +T  +++  +  T T  N +  
Sbjct: 57  WESVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             + + + + IF+   F S         +A ++  + +  S  E       +  +S+IYE
Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +F + ++     + TP+++ ++   +L    + + K       +++DPT G+G  L
Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               +++     +     ++  +GQE +   + +    +++  +E +       NI    
Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278

Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331
           TL  D   G        + F   ++NPP+   W              +  R+   G+   
Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +     FL+H    L       GR AI+L    LF G     E  IR+ L++   IE I+
Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKALIDKHQIETII 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
             P  LF    I   + IL   + E     V  I+A+  +   +    K+  +  +   +
Sbjct: 384 GFPEKLFLNAAIPVCVVILRKNRIES---DVLFIDASKEFEKTK----KQNSLRSEDVDK 436

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D  ++R+   K+S +            +  P  +    ++  +  +        L+  
Sbjct: 437 IVDTVINRKEIDKYSHIATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVSLNAD 496

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            +    D L  + +        E        
Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527


>gi|283770885|ref|ZP_06343777.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461032|gb|EFC08122.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
          Length = 405

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 103/445 (23%), Positives = 180/445 (40%), Gaps = 48/445 (10%)

Query: 93  STNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148
           +T  R    S +   S+N    +F D D SST       E+  L+ K+  N   +     
Sbjct: 2   ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHS 61

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D         +R 
Sbjct: 62  DMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRH 113

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L              K   +    GQE    T+ +    ML+  +    
Sbjct: 114 VYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV---- 159

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            R  + +I+   TL    F G  F   ++NPP+  KW  D      E  +G        L
Sbjct: 160 -RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKL 213

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              S     F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+E  + +
Sbjct: 214 APKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYL 266

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +      GK +  ++D 
Sbjct: 267 EAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDA 320

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           Q  +I++ Y  +E   K+S     +        +  P R     ++     L+      K
Sbjct: 321 QVERIINTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLK 379

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGW 531
                 +     +   ++++     
Sbjct: 380 NIDKEIAEIEQEINAYLKELGVLKD 404


>gi|284023442|ref|ZP_06377840.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus 132]
          Length = 424

 Score =  240 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 105/455 (23%), Positives = 184/455 (40%), Gaps = 49/455 (10%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICK 138
           T ++ +  L +T  R    S +   S+N    +F D D  ST       E+  L+ K+  
Sbjct: 12  TQDFDIEHL-ATAIRKVETSTLGEESENDFIGLFSDMDLISTRLGNNVKERTALISKVMV 70

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           N   +      +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D  
Sbjct: 71  NLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD-- 128

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                  +R +YDPTCG+G  L              K   +    GQE    T+ +    
Sbjct: 129 ------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMN 172

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  D      E  +
Sbjct: 173 MLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFS 227

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           G        L   S     F+ H+ + L+      G  A+VL    LF G A   E  IR
Sbjct: 228 GY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIR 275

Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +      
Sbjct: 276 RYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK---- 329

Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           GK +  ++D Q  +I+D Y  +E   K+S     +        +  P R     ++    
Sbjct: 330 GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPI 388

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            L+      K      +     +   ++++     
Sbjct: 389 DLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 423


>gi|313620399|gb|EFR91801.1| type I restriction-modification system, M subunit [Listeria innocua
           FSL S4-378]
          Length = 529

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/571 (16%), Positives = 192/571 (33%), Gaps = 74/571 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-------------- 46
           M   T     +    W       G    T +   I      + L                
Sbjct: 1   MALSTEQKTKM----WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLNGVLRGEN 56

Query: 47  ---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                               G  I    F      +  +T  +++  +  T T  N +  
Sbjct: 57  WENVYSQDSVKALNYMKKNLGYAIQPNEFFVDWKKAI-DTDRFNIGMMTDTFTHFNQQIA 115

Query: 104 IASFSDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             + + + + IF+   F S         +A ++  + +  S  E       +  +S+IYE
Sbjct: 116 FEAKN-DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SNDTVSDIYE 173

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +F + ++     + TP+++ ++   +L    + + K       +++DPT G+G  L
Sbjct: 174 YLVAQFATVLASDMGQYYTPKEISNVMARILTFGREDMEK------FSIFDPTVGSGSLL 227

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               +++     +     ++  +GQE +   + +    +++  +E +       NI    
Sbjct: 228 LTTASYMK----NSGRRGVIKYYGQEKDATPYRLSRMNLMMHGIEYNDI-----NINHAD 278

Query: 281 TLSKDLFTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331
           TL  D   G        + F   ++NPP+   W              +  R+   G+   
Sbjct: 279 TLESDWPDGVVDGKDTPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGVSPK 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +     FL+H    L       GR AI+L    LF G     E  IR+ L++   IEAI+
Sbjct: 331 TKADYAFLLHCLYHL----EDNGRMAIILPHGVLFRGA---SEGRIRKSLIDKHQIEAII 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
             P  LF    I   + IL   + E     V  I+A+  +   +    K+  +  +   +
Sbjct: 384 GFPEKLFLNAAIPVCVVILRKNRIES---DVLFIDASKEFEKTK----KQNSLRSEDVDK 436

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I+D  ++R+   K+S +            +  P  +    ++  +  +        L+  
Sbjct: 437 IVDTVINRKEIDKYSHLATLDEIKENDYNLNIPRYVDTFEEEEAIDLVALGNEMVALNAD 496

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
            +    D L  + +        E        
Sbjct: 497 IKKAETDFLGLLDELAVTPDTKEIIEATKAV 527


>gi|3581984|emb|CAA09337.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 396

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 161/425 (37%), Gaps = 59/425 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----EPTRSAVREKYLA 61
              A L   IW  A ++ G     DF + +L     R +        E    +V+   +A
Sbjct: 5   QQRAELHRQIWAIANEVRGAVDGWDFKQYVLGALFYRFISENFTSYIEAGDDSVQYAGMA 64

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------------S 108
                 +++         F   S+   +     NT ++L + + S               
Sbjct: 65  DSDIGDEIKDDAVRTKGYFIAPSQLFCNVANGANTNDHLNADLNSIFVAIESSASGYPSE 124

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
            + K +F   DF +T  RL     EK   L  + K   G+ L   D     +  + YE L
Sbjct: 125 ADIKGLFA--DFDTTSNRLGSTVKEKNIRLAAVLKGVEGLALGDFDAHQIDLFGDAYEFL 182

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +   +   +F TP+ V  L   L +    ++ K        +YDP  G+G  L  
Sbjct: 183 ISNYAANGGKSGGEFFTPQHVSKLIAQLAMHGQTSVNK--------IYDPAAGSGSLLLQ 234

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  H  +              GQE+   T  +    M +  +  D       +I+ G+TL
Sbjct: 235 AKKHFDNHIIEDG------FFGQEINHTTFNLARMNMFLHNINYDKF-----DIRLGNTL 283

Query: 283 SKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFL 339
               F  ++ F   +SNPP+  KW    D            RF P   L   S     F+
Sbjct: 284 LAPEFKDEKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGVLAPKSKADFAFV 338

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H  N L    +  GRA IV      + G A   E +IR++L++++ +E +++L  +LFF
Sbjct: 339 LHALNYL----SAKGRAPIVCFPGIFYRGGA---EQKIRKYLVDSNYVETVISLAPNLFF 391

Query: 400 RTNIA 404
            T IA
Sbjct: 392 GTTIA 396


>gi|14520514|ref|NP_125989.1| type i restriction modification enzyme, subunit m [Pyrococcus
           abyssi GE5]
 gi|5457729|emb|CAB49220.1| hsdM type I restriction modification enzyme, subunit M [Pyrococcus
           abyssi GE5]
          Length = 623

 Score =  239 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 96/549 (17%), Positives = 194/549 (35%), Gaps = 58/549 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           TE   S   L + +   A+ + G      +   +L F   + +            +    
Sbjct: 113 TETKISRDRLISLLKAAADQIRGGLD---YKA-LLVFLFYKAISDRW-------MKMAQD 161

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--------TNTRNNLESYI-----ASFS 108
                        +    +YN  +     L +           +    + I         
Sbjct: 162 LMKEGKTKTQAYILTNKRYYNLFDEDTGKLYTWHEVVKSRETIKEMANALIKISEMNEEL 221

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            + K + E       I   +    L +I K F+ ++         ++ + YE ++  F  
Sbjct: 222 ADLKKLVEVLGLIGFIKE-DNLHKLEEIVKIFNRVDF--AEFDSDILGDAYEWILSYFAP 278

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + ++   +  TPR+V+ L   LL   D +             DP  G+GG L +A  +V 
Sbjct: 279 QKAKE-GEVYTPREVIRLLVELLDIEDGSDI----------LDPASGSGGMLIEAYRYVK 327

Query: 229 DCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRL---ESDPRRDLSKNIQQGSTLS 283
           +          P ++ +GQEL   T A+    +++  +   +     D   N Q    L 
Sbjct: 328 EKLKKEGFDEEPAIMLYGQELNEVTAALSKLNLILHGIQEFKIFEGADSLVNPQWEEELK 387

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           ++     +  Y ++NPP+ +    +    ++  K+        G          ++  + 
Sbjct: 388 RNGIEDGKVDYVIANPPWNQDGYDETRLSDRRIKHIY----KYGYTSKQSADWAWVQLML 443

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
                      +  IVL +  LF G A   E  IR+ ++E+DLIEAI+ LP  LF+    
Sbjct: 444 YYARR------KVGIVLDTGALFRGGA---EKAIRQGIVEDDLIEAIILLPEKLFYNAAA 494

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + +L+  K EER+GK+  INA+  +       +K   + D+  R+I+D Y   +  +
Sbjct: 495 PGIIMVLNPNKPEERKGKILFINASREFRKHPEV-RKLNQLADEHIRKIVDAYREFKEIE 553

Query: 464 -FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            FSR++           +   L +    ++  +   +    ++++    +         +
Sbjct: 554 GFSRVVTLEEIRKNDYNLNVSLYVFPEDEREQIDLAKEFKEFKEIEKRERELVEKAKAYI 613

Query: 523 MQQIYPYGW 531
              +     
Sbjct: 614 EGILGAMDN 622


>gi|93007189|ref|YP_581626.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92394867|gb|ABE76142.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 526

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 171/489 (34%), Gaps = 61/489 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL- 60
              S   L + +W  A++L         ++   +L    LR ++   E  +  ++E    
Sbjct: 1   MDISIKQLESDLWNAADNLRANSTLTAAEYKDPLLGLVFLRFVQNRHEDAKVKIQESLAI 60

Query: 61  ---AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESY---IASFSDNAK 112
                    +  + FV          ++Y          N    + +    I     +  
Sbjct: 61  NPRTGQKREVTKDDFVAAGSILLPEKAKYDYLAALPESENIAEAINNAMKLIEEEYPSLV 120

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS- 171
            I           ++    LL  + + F+   +        +   IYE  + +F  + + 
Sbjct: 121 GILPKNY------QVFDNKLLRDLVRVFNKDAVRKAKGD--IFGRIYEFFLMKFSMQGAG 172

Query: 172 -EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP  +V+L    +                 ++DP CG+GG      + +   
Sbjct: 173 AQEGGEFFTPPSLVNLIVNFIQPDHG-----------IIHDPACGSGGMFVQTAHFIQGH 221

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-G 289
             +  +   +  +G EL+     +    + +  +E          I + ++   +     
Sbjct: 222 MPNKSVNEAITVYGTELKSNNTKLAKMNLAVHGIEGA--------IIESNSFYTNPHDLN 273

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-----KISDGSMLFLMHLAN 344
            +  + ++NPPF       K+    E       R   G P      I +G+ L++ +  +
Sbjct: 274 GKCDFVMANPPFNVSGIDGKNKFLTE-----DARLPFGAPLTKGGTIGNGNYLWIQYFHS 328

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       GRA  V++SS      AG  E  IR+ L+E   +E IV++  + F+  ++ 
Sbjct: 329 YLNKT----GRAGFVMASSA---TDAGHAEKLIRQQLIETGDVECIVSIANNFFYTRSLP 381

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            ++W  +  K  E + K+ +I+A + +   R      +  ++DQ   +  +  +    + 
Sbjct: 382 CHVWFFNKEKKAENKDKILMIDARNTY---RKVSSTIQDFSEDQLEGLTALINAFRGDEL 438

Query: 465 SRMLDYRTF 473
               D   F
Sbjct: 439 GVSKDNEWF 447


>gi|212695171|ref|ZP_03303299.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855]
 gi|319641373|ref|ZP_07996066.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A]
 gi|212662257|gb|EEB22831.1| hypothetical protein BACDOR_04709 [Bacteroides dorei DSM 17855]
 gi|317386988|gb|EFV67874.1| hypothetical protein HMPREF9011_01663 [Bacteroides sp. 3_1_40A]
          Length = 529

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 108/493 (21%), Positives = 191/493 (38%), Gaps = 65/493 (13%)

Query: 1   MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-- 55
           M +         +L   ++     L G    TD   ++L    L+ +    +  +  +  
Sbjct: 1   MAKKQTKITKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKDKIRH 60

Query: 56  -REKYLAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLG---STNTRNNLESYIASF 107
              +               +   Y     F+ T E     L     T      ++ I + 
Sbjct: 61  EIVEVQGIHDEAFVEMQLSRPNQYMQDGVFFLTDETFWDKLILTAPTGMAIAFDTAIKTL 120

Query: 108 SDN---AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            DN    K       F+ T   L   G+L  +    + I+         ++  +YE+ ++
Sbjct: 121 DDNEPKLKNALPQQIFTKTALEL---GVLKSVVDEINKIDPK-KFTDHDLIGRVYEYFLQ 176

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F     +   +F TP  +V L  +L+                T+YDP CG+GG    A 
Sbjct: 177 AFSINADKEEGEFYTPHSIVELIASLI-----------EPFDGTVYDPCCGSGGMFVQAT 225

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +   G + K    +  +GQE EP T+ +    + IR +               ST S 
Sbjct: 226 KFIEAHGGNTKA---VNVYGQESEPATYRLAKMNLAIRGISYHLGDKAV------STFSD 276

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLA 343
           D     +F Y ++NPPF  K   +    E         R+ G G+P  S+ +  +++H+ 
Sbjct: 277 DQHKDLKFDYIMANPPFNLKKYAEYGEFE------TAPRWKGYGVPPASNANYAWILHIL 330

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           NKL++     G A  +L++  L +        EIR+ L+END IEAI+ LP ++F+ T+I
Sbjct: 331 NKLDVNH---GIAGFLLANGALDDSDT----LEIRKRLIENDKIEAIIVLPRNMFYSTDI 383

Query: 404 ATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +  LWIL+N K            R G++  I+     ++I    KK   + + +  ++  
Sbjct: 384 SVTLWILNNNKKGGPWHGRQLRNRTGEILFIDLRTWNSNI--YEKKYVRLTETEISRVCQ 441

Query: 455 IYVSRENGKFSRM 467
           IY + +   F+  
Sbjct: 442 IYFNWQTENFAEY 454


>gi|121608535|ref|YP_996342.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121553175|gb|ABM57324.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 519

 Score =  239 bits (611), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 103/494 (20%), Positives = 181/494 (36%), Gaps = 73/494 (14%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              +W  A  + G+     F   +LP   L+RL    +     +     A+G     LE 
Sbjct: 2   EQMLWDAACSIRGEKDAAKFKDYLLPLLFLKRLSDVFD---DEIARLAEAYGDRATALEI 58

Query: 72  FVKVAGY-SFYNTSEYSLSTL-----------------GSTNTRNNLESYIAS---FSDN 110
                G   FY   E   + L                    +  ++L   + +    S  
Sbjct: 59  TEFDHGLLRFYLPPEARWAVLSGRETYEWPLDAQGRSTAPRDIGDHLTRAVRAVVKHSPT 118

Query: 111 AKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRF 166
             ++ +  DF       R      L  + + FS          V    +   YE+L+R+F
Sbjct: 119 LASVIDMVDFAAERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKF 178

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                + A +F TP +V  L   +L           P    T +D  CG+ G L      
Sbjct: 179 AEGSGQSAGEFFTPTEVGFLMAHIL----------RPRPGETCHDYACGSAGLLIKLQLV 228

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
             +     ++P      GQEL+ E++AV     +I  +E            +G T+    
Sbjct: 229 ARELDPTSRVPLQ--LSGQELQAESYAVAQMNAIIHDMEVTL--------ARGDTMINPK 278

Query: 287 F-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLM 340
           F       +R    ++NP + + +  D         N    RF   G      G   +L 
Sbjct: 279 FREANGKLRRHDVVVANPMWNQPFAPDL------FANDPFDRFRTAGGVTSGKGDWAWLQ 332

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGR---AGSGESEIRRWLLENDLIEAIVALPTDL 397
           H    L       GRAA+VL +  +  G        E  IR+W ++ D I+ ++ LP +L
Sbjct: 333 HTLACLAAD----GRAAVVLDTGAVTRGSGSKNEDKERNIRKWFVDKDTIDGVILLPENL 388

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T  A  + +L+ RK+  R+GK+ L+NA+  +      G+ +  + ++  + +  +Y+
Sbjct: 389 FYNTTAAGVIVVLNKRKSTARKGKITLLNASKHFRK----GRPKNYLPEEDIKPLAAMYL 444

Query: 458 SRE--NGKFSRMLD 469
             E   G+ + +  
Sbjct: 445 KGEAVEGEVAVITT 458


>gi|229021766|ref|ZP_04178344.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1272]
 gi|228739513|gb|EEL89931.1| Type I restriction-modification system, M subunit [Bacillus cereus
           AH1272]
          Length = 402

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 91/423 (21%), Positives = 172/423 (40%), Gaps = 50/423 (11%)

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           ++ + +F+D D +S  ++L      ++ L+ K+  N + I    D V   V+ + YE++I
Sbjct: 20  EDFENLFDDMDLNS--SKLGRTVKARSELIAKVLVNIADIPFLQDDVEIDVLGDAYEYMI 77

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +F +   + A +F TP+ V  +   ++              I+ +YD TCG+G  L   
Sbjct: 78  SQFAANAGKKAGEFYTPQQVSRILAKIVTAGKTE--------IKDVYDGTCGSGSLLLRV 129

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                          +   +GQE    T+ +    ML+  +          +I+   TL 
Sbjct: 130 GKEAK----------VYNYYGQEKVSTTYNLARMNMLLHDI-----PYQRFDIKNADTLE 174

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +     KRF   ++NPP+  KW  D    + E  +         L   S     F+ H  
Sbjct: 175 EPQHLDKRFEAIVANPPYSAKWSADDKFQDDERFSNY-----AKLAPKSKADFAFVQHFI 229

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402
           + L       G  A+VL    LF G A   E  IR++L+E  + ++A++ LP ++FF T+
Sbjct: 230 HHLAD----NGTFAVVLPHGVLFRGAA---EGVIRKYLIEEKNYLDAVIGLPANIFFGTS 282

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-N 461
           I T + +L  +K  +    V  I+A++ +      GK +  + D+   +I++ Y+SRE  
Sbjct: 283 IPTCILVL--KKCRKHDDNVIFIDASNEFEK----GKNQNHLADEHVEKIVNTYLSRETF 336

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            K+S              +  P  +    ++  +   E       +         ++   
Sbjct: 337 DKYSYAATLDEIRENDYNLNIPRYVDTFEEEEPVDLAEVAKQLEAIDEEIAKVDEELAAY 396

Query: 522 MMQ 524
             +
Sbjct: 397 FKE 399


>gi|260581409|ref|ZP_05849223.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae RdAW]
 gi|12643776|sp|Q57168|T1MH_HAEIN RecName: Full=Putative type I restriction enzyme HindVIIP M
           protein; Short=M.HindVIIP
 gi|1574745|gb|AAC22936.1| type I modification enzyme (hsdM) [Haemophilus influenzae Rd KW20]
 gi|260091951|gb|EEW75900.1| type I restriction-modification system, M subunit [Haemophilus
           influenzae RdAW]
          Length = 443

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 155/453 (34%), Gaps = 56/453 (12%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP- 151
           +    +     I   ++  K + +                L  +   FS       T   
Sbjct: 32  AKLIDDAF-DAIEKDNEKLKGVLQRIS-----GYAVNEDTLRGLIILFSDTHFTRPTYNG 85

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    ++ ++YE+ + RF     + +  + TP+ +V L   +L             
Sbjct: 86  EPVHLGAKDILGHVYEYFLSRFAQAEGKRSGQYFTPKSIVSLIVEML-----------EP 134

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR +
Sbjct: 135 YSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIRGI 191

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           + D  +  +       + ++     K+  + ++NP F  K               +  R+
Sbjct: 192 DYDFGKYNA------DSFTQPQHIDKKMDFIMANPHFNDKEW-------WNESLADDPRW 238

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++  
Sbjct: 239 AYGTPPKGNANFAWLQHMIYHLSP----NGKIALLLANGSM--SSQTNNEGEIRKAIINA 292

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R  
Sbjct: 293 DLVECMVALPGQLFTNTKIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDF 347

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADIT 503
             D   +I D   + +    S   + +    +   +       F+L         E +  
Sbjct: 348 TADDIAKIADTLHAWQT---SDGYEDQAAFCKSATLEEIKNNDFVLTPGRYVGTAEQEDD 404

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
               +   Q+    + +   +        +  +
Sbjct: 405 GVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 437


>gi|283768149|ref|ZP_06341064.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
 gi|283462028|gb|EFC09112.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus H19]
          Length = 405

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 104/445 (23%), Positives = 179/445 (40%), Gaps = 48/445 (10%)

Query: 93  STNTRNNLESYIASFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPD 148
           +T  R    S +   S+N    +F D D SST       E+  L+ K+  N   +     
Sbjct: 2   ATAIRKVETSTLGEESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHS 61

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D         +R 
Sbjct: 62  DMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRH 113

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDPTCG+G  L              K   +    GQE    T+ +    ML+  +    
Sbjct: 114 VYDPTCGSGSLLLRVG----------KETKVYRYFGQERNNTTYNLARMNMLLHDV---- 159

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            R  + +I+   TL    F G  F   ++NPP+  KW  D      E  +G        L
Sbjct: 160 -RYENFDIRNDDTLENPAFLGHTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKL 213

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              S     F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+E  + +
Sbjct: 214 APKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYL 266

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +      GK +  ++D 
Sbjct: 267 EAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDA 320

Query: 448 QRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           Q  +I+D Y  +E   K+S     +        +  P R     ++     L+      K
Sbjct: 321 QVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLK 379

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGW 531
                 +     +    +++     
Sbjct: 380 NIDKEIAEIEQEINEYRKELGVLKD 404


>gi|330723247|gb|AEC45617.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis MCLD]
          Length = 906

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/513 (19%), Positives = 184/513 (35%), Gaps = 78/513 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP----------- 50
           T  T +   L N IW+ A ++ G  + T++   +L     + +    E            
Sbjct: 11  TNKTFTKQELGNKIWEAANEMRGSLEITEYKNFLLELIFYKTISQRFEEWFLKYNGNIED 70

Query: 51  -------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNN 99
                             +  +  +           ++   +Y  S+    N    + + 
Sbjct: 71  IQWLNDDYYEDNSSIKSPYSKNEYEEIKESANKNLGYFIQHQYLYSSWMKDNARNFSASL 130

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEK------------AGLLYKICKNFSGIELHP 147
           L   I SF  N +   E+  F +    L                 L K+ +    I +  
Sbjct: 131 LNRSINSFDSNLRGKSENL-FENIFKTLSDELYKLSTNEAEQTKKLKKLIEIIKDIPVKK 189

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++  +YE+LI +F S   +   +F TP ++  L   ++                
Sbjct: 190 GQYD--ILGFVYEYLIGKFASSAGKKGGEFYTPHEISLLMAEIVAFHLKH------KDNI 241

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDPT G+G  L +            K    +  + QE+   T+ +    +++  +   
Sbjct: 242 KIYDPTSGSGSLLLNIGEVFQKFN---KKKHSVTYYAQEINESTYKLTKMNLILHGVNVS 298

Query: 268 PRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                    +   TL +D    K       R    +SNPP+  KW+ +    +K  +   
Sbjct: 299 EIHA-----RNADTLKQDWPIDKINSTEPLRVDSVVSNPPYSLKWDTENAESDKRFR--- 350

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  +   +     FL+H    +       G  AIVL    LF G     E  IR  
Sbjct: 351 ----SYAVAPKAKADFAFLLHDLYHISPD----GIVAIVLPHGVLFRGGN---EKIIRER 399

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L+EN  I++I+ LP+D+F+ T+I+T + IL  RKT + + ++  ++A+ L+        K
Sbjct: 400 LIENAEIDSIIGLPSDIFYGTSISTIIVIL-KRKTNDEKNQILFVDASKLFVKE----GK 454

Query: 441 RRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           +  +     ++I D   ++     FSR++D   
Sbjct: 455 KNKLEISHIKKIADTVNNKIELKDFSRLVDVSE 487


>gi|15672633|ref|NP_266807.1| type I restriction enzyme M protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12723556|gb|AAK04749.1|AE006298_2 type I restriction enzyme M protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|3057062|gb|AAC38346.1| HsdM [Lactococcus lactis]
          Length = 515

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 86/540 (15%), Positives = 177/540 (32%), Gaps = 66/540 (12%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE----KYLAFGGSNID 68
           N +W       G    T +   I      + L          V      + +        
Sbjct: 9   NKMWALLNQTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYDQDPVRA 68

Query: 69  LESFVKVAGYSFYNTSEY-SLSTLGSTN------TRNNLESYIASFSDNAKA----IFED 117
           L+   +  GY+      +                  +    +    +  AK     IF+ 
Sbjct: 69  LDYMKQKLGYAIQPKEFFKDWEAAIHEERFNIPMISDTFGHFNQQIAFEAKDDFEGIFDG 128

Query: 118 FDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             F S+        +A ++  + +  S  E    T     +S+IYE+L+ +F + ++   
Sbjct: 129 MRFDSSDLGSNAQARASVMISMIELLSAPEFDLSTGG-DTVSDIYEYLLEKFATVLASDM 187

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TP+++  +   +L                ++YDP  G+   L    +H+     H 
Sbjct: 188 GQYYTPKEISEVMARILTFGKADE------DNFSIYDPAVGSASLLITTASHMK----HS 237

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----- 289
                +   GQE +   + +    +++  +E +        I    TL  D   G     
Sbjct: 238 NQRGAIKYFGQEKDATPYRLARMNLMMHNIEYNDI-----QIHHADTLESDWPDGVIEGK 292

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANK 345
              + F   ++NPP+   W              +  RF   G+   +     FL+H    
Sbjct: 293 DTPRMFDAVMANPPYSAHW--------NNKDREDDPRFREYGIAPKTKADYSFLLHCLYH 344

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
            +      GR AI+L    LF G A   E  IR+ L++   IEA++  P  LF  T I  
Sbjct: 345 TKES----GRVAIILPHGVLFRGAA---EGRIRKALIDKHQIEAVIGFPDKLFLNTGIPV 397

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            + IL   +       +  ++A+  +  ++N    ++ +  +   +I +  + R+   K+
Sbjct: 398 CVLILKKNRANS---DILFVDASQGFEKMKN----QKQLRPEDIDKITETVIHRKAVDKY 450

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S +            +  P  +    ++  +   +      ++          +     +
Sbjct: 451 SHLATLEEVIENDYNLNIPRYVDTFEEEESIDLADIQGQIDEVDAEIAKANQTLANYFKE 510


>gi|315195780|gb|EFU26162.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 378

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 44/406 (10%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+ V  + 
Sbjct: 14  ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 73

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++ D  D         +R +YDPTCG+G  L              K   +    GQE 
Sbjct: 74  AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 115

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  
Sbjct: 116 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 170

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D      E  +G        L   S     F+ H+ + L+      G  A+VL    LF 
Sbjct: 171 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 221

Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+
Sbjct: 222 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 276

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485
           A++ +      GK +  ++D Q  +I+D Y  +E   K+S     +        +  P R
Sbjct: 277 ASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 331

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                ++     L+      K      +     +   ++++     
Sbjct: 332 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 377


>gi|315187187|gb|EFU20944.1| Site-specific DNA-methyltransferase (adenine-specific) [Spirochaeta
           thermophila DSM 6578]
          Length = 332

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 128/345 (37%), Gaps = 46/345 (13%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           MT    + A+L   N +W+ A+ L G     ++  V+L    L+ +    E  R  + ++
Sbjct: 1   MTTNKPNGANLGFENKLWEMADKLRGHMDAAEYKHVVLGLIFLKYISDTFEAHRKQLLQE 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNA 111
              +       E     A   F+   E     + +   +  +          I   + + 
Sbjct: 61  --PYADPEDRDEYL---AANVFWVPPEARWEHIQAQAPQPTIGQVIDRAMEAIERENPSL 115

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIYEHLIRRFGSEV 170
           K +        T+ ++     L ++ K    I+L   ++     +  +YE+ + RF +  
Sbjct: 116 KGVLPKDYSRPTLDKV----RLGELVKLVGDIDLKARESGVKDPLGRVYEYFLGRFAAAE 171

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G  +F TP+ VV L   ++                 +YDP CG+GG    +   V   
Sbjct: 172 GKGGGEFYTPQCVVQLLVEMI-----------EPYRGRVYDPCCGSGGMFVQSEKFVEAH 220

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           G        +  +GQE  P T  +    + IRR+++D     +       T  +DL    
Sbjct: 221 G---GKLGDIAIYGQESNPTTWRLAKMNLAIRRIDADLGPYAA------DTFFEDLHKDL 271

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +  + L+NPPF       +       +  E  R+  G+P  ++ +
Sbjct: 272 KADFILANPPFNMSDWGGE-------RLTEDPRWKYGVPPANNAN 309


>gi|258450492|ref|ZP_05698580.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282929846|ref|ZP_06336981.1| type I restriction enzyme M protein [Staphylococcus aureus A9765]
 gi|257861797|gb|EEV84594.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282591805|gb|EFB96865.1| type I restriction enzyme M protein [Staphylococcus aureus A9765]
          Length = 382

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 44/406 (10%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+ V  + 
Sbjct: 18  ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 77

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++ D  D         +R +YDPTCG+G  L              K   +    GQE 
Sbjct: 78  AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 119

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  
Sbjct: 120 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 174

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D      E  +G        L   S     F+ H+ + L+      G  A+VL    LF 
Sbjct: 175 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 225

Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+
Sbjct: 226 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 280

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485
           A++ +      GK +  ++D Q  +I+D Y  +E   K+S     +        +  P R
Sbjct: 281 ASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 335

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                ++     L+      K      +     +   ++++     
Sbjct: 336 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 381


>gi|148377828|ref|YP_001256704.1| modification (methylase) protein of type irestriction-modification
           system [Mycoplasma agalactiae PG2]
 gi|148291874|emb|CAL59265.1| Modification (Methylase) protein of type Irestriction modification
           system [Mycoplasma agalactiae PG2]
          Length = 892

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 108/609 (17%), Positives = 209/609 (34%), Gaps = 97/609 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTL---------------------LR 42
              +   L + IW  A  L    +  ++   +L   L                     L+
Sbjct: 3   NKITKEKLGSKIWAAANKLRDKLEAYEYKDYVLGLILYKFLCEKQTDYLIKNWISKDQLK 62

Query: 43  RLECALEPTRSAVREKY-----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--- 94
             +       S     Y             D +        +F + S+  ++ L +    
Sbjct: 63  YFDSKYLDNISNFSAFYTGDNLEGNYEIFKDAKKECIDENGNFIDYSDLFIAWLENKSSF 122

Query: 95  ---NTRNNLESYIASFSDNAKAIFEDF--DFSSTIARL-----EKAGLLYKICKNFSGIE 144
              N +    ++  S +D  K++F+D    F   +++L     E+  ++  +    + I 
Sbjct: 123 NIQNFQQAFNNFNNSINDAHKSLFKDLFAKFERDLSKLGADTNEQTKVISDLLDIINDIP 182

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    V+  IYE+LI RF S   + A +F TP +V  L + ++             
Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAYHLKDR------ 234

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +YDPT G+G  L           S       +  + QEL+ E   +    ++++ +
Sbjct: 235 EFIKVYDPTSGSGSLLLTIGQEFKKYNSG---NSPVSYYAQELKAEVFNLTRMNLIMKNI 291

Query: 265 ESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                       + G TL +D           +        +SNPP+ + W  +K  ++ 
Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQNWNAEKHTLDP 346

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            +          G+   +     FL+H    ++      G  AIVL    LF G     E
Sbjct: 347 RYIE-------YGIAPKTKADYAFLLHDLYHVQPD----GIMAIVLPHGVLFRGN---SE 392

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L++   I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+   
Sbjct: 393 GQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVKE 449

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                K    +    ++I D+  +R   K            RR+ +   +   + L+ + 
Sbjct: 450 ----GKNNKFSKSHIKKIADVVNNRIEIKN---------FSRRVLLDEIVANDYNLNISR 496

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                       L  L         + + +    +G       +  K N     ++K +K
Sbjct: 497 YIDNFKKQEQHDLYSLMHGGISK--EELAKLDNFFGLFTGLKDKLFKINANNYYELKVAK 554

Query: 555 SFIVAFINA 563
             I   IN 
Sbjct: 555 EDINPTING 563


>gi|320143287|gb|EFW35074.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
          Length = 394

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 165/406 (40%), Gaps = 44/406 (10%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+ V  + 
Sbjct: 30  ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 89

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++ D  D         +R +YDPTCG+G  L              K   +    GQE 
Sbjct: 90  AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 131

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  
Sbjct: 132 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 186

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D      E  +G        L   S     F+ H+ + L+      G  A+VL    LF 
Sbjct: 187 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 237

Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+
Sbjct: 238 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 292

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485
           A++ +      GK +  ++D Q  +I+D Y  +E   K+S     +        +  P R
Sbjct: 293 ASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 347

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                ++     L+      K      +     +   ++++     
Sbjct: 348 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 393


>gi|148377836|ref|YP_001256712.1| modification (methylase) protein of type irestriction-modification
           system HsdM [Mycoplasma agalactiae PG2]
 gi|148291882|emb|CAL59273.1| Modification (Methylase) protein of type Irestriction modification
           system HsdM [Mycoplasma agalactiae PG2]
          Length = 892

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 178/510 (34%), Gaps = 86/510 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT--RSAVREKYLA 61
              +   L + IW  A  L    +  ++   +L   L + L         ++ V ++ L 
Sbjct: 3   NKITKEKLGSKIWAAANHLRDKLEAYEYKDYVLGLILYKFLCEKQSNYLIKNWVTKEQLK 62

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYS--LSTLGSTNTRNN--LESYIASF--------SD 109
           +  S          A Y+  N                  N     Y   F        S 
Sbjct: 63  YLDSKYLDNISNFSAFYTGNNLESDYEIFKDAKKECIDENGYFIDYSDLFIAWLENKSSF 122

Query: 110 NAKA---IFEDFD-----------------FSSTIARL-----EKAGLLYKICKNFSGIE 144
           N +     F +F+                 F   +++L     E+  ++  +    + I 
Sbjct: 123 NIQDFQQAFNNFNNSINDAHKSLFKDLFVKFERDLSKLGSDTNEQTKVISSLLDIINDIP 182

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                    V+  IYE+LI RF S   + A +F TP +V  L + ++             
Sbjct: 183 STNQDYD--VLGYIYEYLIARFASSAGKKAGEFYTPHEVSELMSKIVAHHLKDR------ 234

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            +  +YDPT G+G  L           S       +  + QEL+ E   +    ++++ +
Sbjct: 235 KVIKVYDPTSGSGSLLLTIGQEFKKYNSG---NSPVSYYAQELKAEVFNLTRMNLIMKNI 291

Query: 265 ESDPRRDLSKNIQQGSTLSKDL----------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                       + G TL +D           +        +SNPP+ +KW  +K  ++ 
Sbjct: 292 SPTEIHA-----RNGDTLEQDWPMFENNDYSSYQHLSVDAVVSNPPYSQKWNAEKHTLDP 346

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            +          G+   +     FL+H    ++      G   IVL    LF G     E
Sbjct: 347 RYIE-------YGIAPKTKADYAFLLHDLYHVQPD----GIITIVLPHGVLFRGN---SE 392

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L++   I+ I+ LP ++F+ T I T + IL   ++E+    +  ++A+ L+   
Sbjct: 393 GQIRKTLIQKQQIDTIIGLPANMFYGTGIPTIIMILKKHRSEK---DILFVDASKLYVKE 449

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                K    +    ++I D+  +R   + 
Sbjct: 450 ----GKNNKFSKSHIKKIADVVNNRIEIEN 475


>gi|160893874|ref|ZP_02074656.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50]
 gi|156864461|gb|EDO57892.1| hypothetical protein CLOL250_01427 [Clostridium sp. L2-50]
          Length = 338

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 136/368 (36%), Gaps = 44/368 (11%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F  +  +   +F TP  VV     +L                 +YDP CG+GG    + 
Sbjct: 1   MFAEQEGKRGGEFFTPSCVVRTLVEVL-----------KPFKGRVYDPCCGSGGMFVQSA 49

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +   +      +  +GQ+  P T  +    + IR +E D     +       T   
Sbjct: 50  KFIENHSGNI---SNISIYGQDSNPTTWKMAQMNLAIRGIEPDLGTYAA------DTFLD 100

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D     R  Y ++NPPF               K  E  R+  G+P   + +  +L H+  
Sbjct: 101 DRHPTLRADYIMANPPFNLSDWGLD-------KLKEDQRWKYGIPPAGNANFAWLQHMIY 153

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       GR  +VL++  L       GE EIR+ ++  DL+E IVA+PT LF+ T I 
Sbjct: 154 HLAPA----GRIGMVLANGSL--SSQSGGEGEIRKNIINADLVECIVAMPTQLFYTTQIP 207

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             LW ++ +K  ++ G+   I+A  +   +     K R + DD  ++I D Y +  +G  
Sbjct: 208 VSLWFINKQK--KQPGRTLFIDARKMGKMVSR---KLRELTDDDIKKISDTYEAFVDG-- 260

Query: 465 SRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                    GY  +       +  +IL       +E      +            L  M 
Sbjct: 261 ---TLENVKGYCAVTDTAEIEKQDYILTPGRYVGIEEQEADDEPFEEKMDRLTSELAEMF 317

Query: 524 QQIYPYGW 531
            + +    
Sbjct: 318 AKSHELED 325


>gi|258615581|ref|ZP_05713351.1| hypothetical protein EfaeD_07707 [Enterococcus faecium DO]
          Length = 411

 Score =  237 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/416 (21%), Positives = 181/416 (43%), Gaps = 45/416 (10%)

Query: 113 AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            +F+D D  S        ++   + ++ K  + +E+        V+ + YE LI +F SE
Sbjct: 12  GLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEFLISQFASE 69

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP  V  +   ++         +      +++DPT G+G  + +  N++  
Sbjct: 70  AGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT- 122

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T 
Sbjct: 123 ------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTD 171

Query: 290 KRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           + + +   + NPP+   W  D   ++         R+G  L   S     FL+H    L+
Sbjct: 172 EPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLK 226

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T +
Sbjct: 227 ET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 279

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R++ + ++ 
Sbjct: 280 IVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKDVEKYAH 332

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           + ++         +  P  +    ++  +  +      +K+    Q    ++L+ +
Sbjct: 333 LANFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 388


>gi|265755688|ref|ZP_06090309.1| type I restriction-modification system DNA methylase [Bacteroides
           sp. 3_1_33FAA]
 gi|263234294|gb|EEZ19887.1| type I restriction-modification system DNA methylase [Bacteroides
           sp. 3_1_33FAA]
          Length = 529

 Score =  237 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 187/490 (38%), Gaps = 59/490 (12%)

Query: 1   MTEFTGSAA---SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV-- 55
           M +         +L   ++     L G    TD   ++L    L+ +    +  +  +  
Sbjct: 1   MAKKQTKITKEETLETILFNCRNSLRGRAAMTDKRDLLLTLVFLKFIGERFKQQKDKIRH 60

Query: 56  -REKYLAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLG---STNTRNNLESYIASF 107
              +               +   Y     F+ T E     L     T      ++ I + 
Sbjct: 61  EIVEVQGIHDEAFVEMQLSRPNQYMQDGVFFLTDETFWDKLILTAPTGMAIAFDTAIKTL 120

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            DN   +              + G L  +    + I+         ++  +YE+ ++ F 
Sbjct: 121 DDNEPKLKNALPQQIFTKTALEPGGLKSVVDEINKIDPK-KFTDHDLIGRVYEYFLQAFS 179

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +   +F TP  +V L  +L+                T+YDP CG+GG    A   +
Sbjct: 180 INADKEEGEFYTPHSIVELIASLI-----------EPFDGTVYDPCCGSGGMFVQATKFI 228

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G + K    +  +GQE EP T+ +    + IR +               ST S D  
Sbjct: 229 EAHGGNTKA---VNVYGQESEPATYRLAKMNLAIRGISYHLGDKAV------STFSDDQH 279

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKL 346
              +F Y ++NPPF  K   +    E         R+ G G+P  S+ +  +++H+ NKL
Sbjct: 280 KDLKFDYIMANPPFNLKKYAEYGEFE------TAPRWKGYGVPPASNANYAWILHILNKL 333

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           ++     G A  +L++  L +        EIR+ L+END IEAI+ LP ++F+ T+I+  
Sbjct: 334 DVNH---GIAGFLLANGALDDSDT----LEIRKRLIENDKIEAIIVLPRNMFYSTDISVT 386

Query: 407 LWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           LWIL+N K            R G++  I+     ++I    KK   + + +  ++  IY 
Sbjct: 387 LWILNNNKKGGPWHGRQLRNRTGEILFIDLRTWNSNI--YEKKYVRLTETEISRVCQIYF 444

Query: 458 SRENGKFSRM 467
           + +   F+  
Sbjct: 445 NWQTENFAEY 454


>gi|301633155|gb|ADK86709.1| type I restriction-modification system, M subunit [Mycoplasma
           pneumoniae FH]
          Length = 543

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 108/584 (18%), Positives = 209/584 (35%), Gaps = 89/584 (15%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48
           M +  T     +   IW+ A+ L G     DF   +L     R L   L           
Sbjct: 1   MEKKRTEQRNGVEKKIWEIADKLRGTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRN 60

Query: 49  --EPTRSAVREKYLA---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
             + +   + + Y A      + I  + F       F N  +       + +    L   
Sbjct: 61  NPDFSYENLTDDYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDI 120

Query: 104 IASFS-----------DNAKAIFEDFDFS--STIARLE-KAGLLYKICKNFSGIELHP-D 148
                           ++ K +F+DF+ S     + L  +   L ++  +   +EL   +
Sbjct: 121 FDDIEKSTELGDGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFE 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   + YE LI  +     +   +F TP+DV  L   + +   D         +  
Sbjct: 181 KNSIDAFGDAYEFLISMYAQNAGKSGGEFFTPQDVSELLARIAIGKKDT--------VDD 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YD  CG+G  L   +  +       +   ++  +GQE+   T+ +C   M++  ++   
Sbjct: 233 VYDMACGSGSLLLQVIKVL-----GKEKTSLVSYYGQEINHTTYNLCRMNMILHNID--- 284

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
               + NI    TL+   +            F   +SNPP+   W  DK +         
Sbjct: 285 --YANFNIINADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSN-----LVS 337

Query: 321 LGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
             RF     L   S   + F++H    L       G AAIV     L+       E  IR
Sbjct: 338 DVRFKDAGTLAPNSKADLAFVLHALYVLGQE----GTAAIVCFPGILYR---EGKEQTIR 390

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           ++L++ + ++A++ LP++LF  T+IAT + +L  +K  +++  +  I+ ++ +   +   
Sbjct: 391 KYLVDQNFVDAVIQLPSNLFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFVREK--- 445

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            K   ++     +I+D + S++                R K+      ++ L        
Sbjct: 446 -KNNRLSPKNIEKIVDCFNSKKEE------ANFAKAVERDKIRE---SNYDLTVGKYVNS 495

Query: 499 EADITWRKLSPLHQS--FWLDILKPMMQQIYPYGWAESFVKESI 540
           EA+     +  L+ S    +D  K +  +I           ++I
Sbjct: 496 EAEKEELDIKVLNHSIDEIVDKQKDLRTKIKDIIQDIKVDFDNI 539


>gi|323438646|gb|EGA96389.1| type I restriction-modification system M subunit [Staphylococcus
           aureus O11]
          Length = 371

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 90/399 (22%), Positives = 164/399 (41%), Gaps = 43/399 (10%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+ V  + 
Sbjct: 7   ERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 66

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++ D  D         +R +YDPTCG+G  L              K   +    GQE 
Sbjct: 67  AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 108

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  
Sbjct: 109 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 163

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D      E  +G        L   S     F+ H+ + L+      G  A+VL    LF 
Sbjct: 164 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 214

Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+
Sbjct: 215 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 269

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485
           A++ +      GK +  ++D Q  +I++ Y  +E   K+S     +        +  P  
Sbjct: 270 ASNDFEK----GKNQNHLSDAQVERIINTYKCKETIDKYSYSATLQEIADNDYNLNIPRY 325

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +    ++  +   +     + +         +I   + +
Sbjct: 326 VDTFEEEEPIDLDQVQQDLKNIDKEIAEIEQEINAYLKE 364


>gi|300725853|ref|ZP_07059318.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP)
           [Prevotella bryantii B14]
 gi|299776866|gb|EFI73411.1| putative type I restriction enzyme MjaXP M protein (M.MjaXP)
           [Prevotella bryantii B14]
          Length = 598

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 93/580 (16%), Positives = 191/580 (32%), Gaps = 64/580 (11%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
           M + T       L   +W++A+ L        + +   +L    LR      +   + + 
Sbjct: 1   MKQMTEKINIRKLEADLWESADLLRAGSKLTSSQYCMPVLALLFLRYAYSRFKMVEAELL 60

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SD 109
           +   + GG  + +E     A  + Y   E     L + +    L   +          S+
Sbjct: 61  KNRPSRGGRVMPVEPSDFAAKSALYLPREAQFDYLVNLSDDQPLGEAVNRAMTLVEEQSE 120

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
               I            +    LL ++ + F+      D +   V+  IYE+ + +F   
Sbjct: 121 QLTGILPKSY------TMFSDELLRELLRIFNNK--TLDEIGGDVIGRIYEYFLSKFAKA 172

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
           V+     F TP+ +V +   +L                 + DP CG+GG      + V  
Sbjct: 173 VASDDGVFFTPKSLVKMLVNVLEPEQG-----------VMLDPACGSGGMFVQTGDFV-- 219

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                     +  +GQE       +C+  M +  L          N     +   D    
Sbjct: 220 NAGGMNANTQMTFYGQEKVEYNAQLCLMNMAVHGLNGRIVSGDEAN-----SFYHDAHNL 274

Query: 290 K-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLFLMH 341
             +  Y ++NPPF     K + A          GR   GLP       +IS+ + L++ +
Sbjct: 275 AGKCDYVMANPPFNVDKVKAESASAA-------GRLPFGLPGVNAKTKEISNANYLWISY 327

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GRA  V++SS      + + + +IR  L+    ++ +V++  + F+  
Sbjct: 328 FYAYLNDH----GRAGFVMASSA---TDSANKDRDIREKLVLTGDVDVMVSVGNNFFYTL 380

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           ++   LW     K  E + +V  I+A + +T +     +         + I+ +Y   E 
Sbjct: 381 SLPCSLWFFDKAKRLENKNRVLFIDARNYYTVVDRTLNEWSEWQLKNLQAIVHLYRG-EQ 439

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            K+  +++     Y         R   +  +      E  +            ++   + 
Sbjct: 440 DKYKALIN----EYWNALSEHAERHDSVAWQDRDMTFEKALGVLNSEEAMYKKYIKDQQG 495

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
            +++       +        +     + ++A      A  
Sbjct: 496 ALKKTKGKKEKDELKAIIASNEAELAVTLEAKDMVNEAIW 535


>gi|313634896|gb|EFS01302.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 251

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 21/255 (8%)

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
              ++ G KR  I+++Q   I+ +Y   +  K  ++ D   FG+ +I V RPLR++F+L 
Sbjct: 3   KMKKSMGNKRNEISEEQIMDIVSLYNETKQNKKIKIFDNEDFGFHKITVERPLRLNFMLS 62

Query: 492 KTGLARLEADITWRKLSPLHQS-------------FWLDILKPMMQQIYPYGWAESFVKE 538
           K  + R++ +  ++ L+  ++                  I+  +   +         +  
Sbjct: 63  KERIERVKHEKVFQNLATSNKKGEAKEKQIEEGIALQQRIINTLNTNVSNEIIKNREIFT 122

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
                  K   +  + + + A +N    KD  AD           DT L +YE++P  + 
Sbjct: 123 KKLKEIFKKEGITVTSTVLKAILNGLSEKDETADICMRNKKTVEVDTELRDYESIPLKKD 182

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           IQ YF  EV PHVPDA+I        D+   +VGYEI F R FY+Y P R  ++I  E++
Sbjct: 183 IQKYFEIEVLPHVPDAWI--------DETATKVGYEIPFTRCFYEYTPIRSSKEILKEIQ 234

Query: 659 GVEAQIATLLEEMAT 673
            +EA++A  L+++  
Sbjct: 235 KLEAEVAEQLKKVFG 249


>gi|328947117|ref|YP_004364454.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
 gi|328447441|gb|AEB13157.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
          Length = 580

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 183/482 (37%), Gaps = 70/482 (14%)

Query: 8   AASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
             +L + +W  A+ L          +G+ IL    LR  +   +  ++ +  +Y    G+
Sbjct: 6   LKTLKDNLWHAADVLRAGAHLAANKYGQPILGLIFLRYADILYKQHKAEIEAEYNKSKGT 65

Query: 66  NIDLESFVKVAGYS-FYNTSEY---SLSTLGSTNTRNNL----ESYIASFSDNAKAIFED 117
             +         Y  FY   E    +++       +  L       I   ++    +   
Sbjct: 66  RAEKSIKDISIKYCGFYLPPEAYYTTINDAPDDANKATLVKKAMETIERENEKMDGVLPK 125

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +    +   E+  LL  I + F  I   P+ +   +   IYE  +  F  +  +    F
Sbjct: 126 -EVYGQLVPEEEPELLSNIMRIFMDI---PENISVDLFGEIYEFFLGEFALQEGKDGGTF 181

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  VV     +L   +           + + DP CG+GG    A+  +          
Sbjct: 182 YTPATVVRYMVEVLQPQNGE---------KKILDPACGSGGMFVQAVRFMHRHNKASDEV 232

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCL 296
                +G E EP+T  +    +L+  +  +        I + ++   D       F Y +
Sbjct: 233 MKFRCYGVEKEPDTVKLAKMNLLLNNVRGE--------IVEANSFYSDPHNAVGNFDYVM 284

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPK---------------ISDGSMLFLM 340
           +NPPF               K  +  RF   G+PK               + + + L++ 
Sbjct: 285 ANPPFNVDEVVYD-------KVKDDPRFNIYGVPKNKSKTAKKGSDKKETVPNANYLWIS 337

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           + A+ L    N  G+AA+V+++S      AG  E EIR+ ++E  +I  +V LP+++F  
Sbjct: 338 YFASSL----NQTGKAALVMANSA---SDAGGSELEIRKKMIEEGIISQMVTLPSNMFSS 390

Query: 401 TNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDI 455
             +   LW    +KT++  ++ K+  I+A  ++T +    +K    +D+Q +    I  +
Sbjct: 391 VTLPATLWFFDKQKTQDAQKKDKILFIDARSIFTQVDRAHRK---FSDEQIKNLGIITRL 447

Query: 456 YV 457
           Y 
Sbjct: 448 YN 449


>gi|118444367|ref|YP_878481.1| type I restriction-modification system DNA methylase [Clostridium
           novyi NT]
 gi|118134823|gb|ABK61867.1| type I restriction-modification system DNA methylase [Clostridium
           novyi NT]
          Length = 705

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 89/538 (16%), Positives = 190/538 (35%), Gaps = 56/538 (10%)

Query: 9   ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             +   +W  A+ L         ++   +L    LR         +  + E   +  G  
Sbjct: 5   KKIERDLWDAADQLRANSKLTAAEYSMPVLGLIFLRYAYNRFLMVKEEIEENLPSRNGKK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIA 125
             +      +  + +         L S     ++   I +     +  +E    S  T  
Sbjct: 65  RPITKEDFESKSAIFLPEIARYDYLVSLTEDADIGKSINNAMKAIEKEYEKLKGSLPTNY 124

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +    LL ++ + F+  EL        V   IYE+ + +F    ++   +F TP  +V 
Sbjct: 125 TIFDNELLRELLRKFNSDELRNAKGD--VFGRIYEYFLNKFAMTGAQEGGEFFTPISLVQ 182

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   ++      +            DP CG+ G      + +   G+          +GQ
Sbjct: 183 MIVNVIEPEQGIVL-----------DPACGSAGMFVQTGHFIQSHGASANDKV--TFYGQ 229

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKK 304
           E       +    M +  LE          I +G+T  +D      + +Y ++NPPF   
Sbjct: 230 EKAELNTKLARMNMAVHGLEG--------KILEGNTFYEDKHELLGKCNYVMANPPFNVD 281

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLFLMHLANKLELPPNGGGRAA 357
               +       K     R   GLP        +S+ + L++ +  + L       GRA 
Sbjct: 282 GVDSE-------KIKTDPRLPFGLPGVNKKSKAVSNANYLWIQYFYSYLNEK----GRAG 330

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            V++SS      AG GE ++R  L++ + ++ I+++  + F+  ++   LW     K+E+
Sbjct: 331 FVMASSA---TDAGHGEKDVRERLIKTNDVDVIISIGNNFFYTRSLPCTLWFFDKNKSED 387

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN------GKFSRMLDYR 471
           ++ KV +I+A +++  +                 I+ +Y  +         ++      +
Sbjct: 388 KKDKVLMIDARNIFRKVNRTINDFSEEQLKNITSIVWLYRGQNERYLKLVAEYINDYSSK 447

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                +  +L   ++  ++D+  L R  +       +   +  +   LK + + I  Y
Sbjct: 448 ANFINKKAILFEDKLHELIDQ--LERFNSFKLVADENKEIREEYYTSLKELQKDIDNY 503


>gi|13508081|ref|NP_110030.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129]
 gi|12229979|sp|P75436|T1MD_MYCPN RecName: Full=Putative type I restriction enzyme MpnORFDP M
           protein; Short=M.MpnORFDP
 gi|1674186|gb|AAB96142.1| type I restriction enzyme HsdM [Mycoplasma pneumoniae M129]
          Length = 543

 Score =  236 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 105/584 (17%), Positives = 210/584 (35%), Gaps = 89/584 (15%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL----------- 48
           M +  T     +   IW+ A+ L G     DF   +L     R L   L           
Sbjct: 1   MEKKRTEQRNGVEKKIWEIADKLRGTIDGWDFKSYVLIGLFYRFLSENLCKYFNDSERRN 60

Query: 49  --EPTRSAVREKYLA---FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
             + +   + + Y A      + I  + F       F N  +       + +    L   
Sbjct: 61  NPDFSYENLTDDYEAIDALKDAAIASKGFFIKPSQLFQNVVKSIRENKNNEDLNTTLRDI 120

Query: 104 IASFS-----------DNAKAIFEDFDFS--STIARLE-KAGLLYKICKNFSGIELHP-D 148
                           ++ K +F+DF+ S     + L  +   L ++  +   +EL   +
Sbjct: 121 FDDIEKSTELGDGRSKESFKGLFKDFNVSEVKLGSTLTIRTEKLKELLTSIDTMELDEFE 180

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   + YE LI  +     +   +F TP+D+  L   + +   D         +  
Sbjct: 181 KNSIDAFGDAYEFLISMYAQNAGKSGGEFFTPQDISELLARIAIGKKDT--------VDD 232

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YD  CG+G  L   +  +       +   ++  +GQE+   T+ +C   M++  ++   
Sbjct: 233 VYDMACGSGSLLLQVIKVL-----GKEKTSLVSYYGQEINHTTYNLCRMNMILHNID--- 284

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR--------FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
               + NI    TL+   +            F   +SNPP+   W  DK +         
Sbjct: 285 --YANFNIINADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSN-----LVS 337

Query: 321 LGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
             RF     L   S   + F++H    L       G AAIV     L+       E  IR
Sbjct: 338 DVRFKDAGTLAPNSKADLAFVLHALYVLGQE----GTAAIVCFPGILYR---EGKEQTIR 390

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           ++L++ + ++A++ LP++LF  T+IAT + +L  +K  +++  +  I+ ++ +   +   
Sbjct: 391 KYLVDQNFVDAVIQLPSNLFSTTSIATSILVL--KKNRDKKDPIFFIDGSNEFVREK--- 445

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            K   ++     +I+D + S++               + ++  +    ++ L        
Sbjct: 446 -KNNRLSPKNIEKIVDCFNSKKEEANFA---------KSVERDKIRESNYDLTVGKYVNS 495

Query: 499 EADITWRKLSPLHQS--FWLDILKPMMQQIYPYGWAESFVKESI 540
           EA+     +  L+ S    +D  K +  +I           ++I
Sbjct: 496 EAEKEELDIKVLNHSIDEIVDKQKDLRTKIKDIIQDIKVDFDNI 539


>gi|323438363|gb|EGA96135.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 386

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 92/401 (22%), Positives = 165/401 (41%), Gaps = 44/401 (10%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+  L+ K+  N   +      +   ++ + YE LI RF +   + A +F TP+ V  + 
Sbjct: 28  ERTALISKVMVNLDDLPFIHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKIL 87

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++ D  D         +R +YDPTCG+G  L              K   +    GQE 
Sbjct: 88  AKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQER 129

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
              T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  
Sbjct: 130 NNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTA 184

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D      E  +G        L   S     F+ H+ + L+      G  A+VL    LF 
Sbjct: 185 DSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFR 235

Query: 368 GRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+
Sbjct: 236 GAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFID 290

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLR 485
           A++ +      GK +  ++D Q  +I++ Y  +E   K+S     +        +  P R
Sbjct: 291 ASNDFEK----GKNQNHLSDAQVERIINTYKRKETIDKYSYSATLQEIADNDYNLNIP-R 345

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                ++     L+      K      +     +   ++++
Sbjct: 346 YVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKEL 386


>gi|268600937|ref|ZP_06135104.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae PID18]
 gi|268683951|ref|ZP_06150813.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae SK-92-679]
 gi|268585068|gb|EEZ49744.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae PID18]
 gi|268624235|gb|EEZ56635.1| LOW QUALITY PROTEIN: type I restriction enzyme EcoprrI M protein
           [Neisseria gonorrhoeae SK-92-679]
          Length = 401

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 149/363 (41%), Gaps = 49/363 (13%)

Query: 111 AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIR 164
            K +F+  DF +T +RL     +K   L  + K  + ++    +     +  + YE+LI 
Sbjct: 15  IKGLFD--DFDTTSSRLGSTVADKNKRLAAVLKGVAELDFGNFEDHRIDLFGDAYEYLIS 72

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +   +   +F TP+ V  L   L +   + + K        +YDP CG+G  L  A 
Sbjct: 73  NYAANAGKSGGEFFTPQSVSKLIARLAVHGQEKVNK--------IYDPACGSGSLLLQAK 124

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              GQE+   T+ +    M +  +  +       +I+ G TL+ 
Sbjct: 125 KQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNVNYNKF-----HIELGDTLTN 173

Query: 285 DLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMH 341
                 + F   +SNPP+   W    D            RF P   L   S     F++H
Sbjct: 174 PKLKDSKPFDAVVSNPPYSIDWIGSDDPT-----LINDDRFAPAGVLAPKSKADFAFILH 228

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             N L    +G GRAAIV      + G A   E +IR++L+E + +E ++AL  +LF+ T
Sbjct: 229 ALNYL----SGRGRAAIVSFPGIFYRGGA---EQKIRQYLVEGNYVETVIALAPNLFYGT 281

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            IA  + +LS  K       +Q I+A   +    N      ++ ++   +I+ ++  + +
Sbjct: 282 CIAVNILVLSKHK---DNTDIQFIDAGGFFKKETN----NNVLTEEHIAEIVKLFADKAD 334

Query: 462 GKF 464
              
Sbjct: 335 VPH 337


>gi|145641328|ref|ZP_01796907.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae R3021]
 gi|145273871|gb|EDK13738.1| putative type I restriction enzyme HindVIIP M protein [Haemophilus
           influenzae 22.4-21]
          Length = 357

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 72/385 (18%), Positives = 145/385 (37%), Gaps = 41/385 (10%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ ++YE+ + RF     +    + TP+ +V L   +L                 +YDP
Sbjct: 7   DILGHVYEYFLGRFAQAEGKRGGQYFTPKSIVSLIVEML-----------EPYSGRVYDP 55

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+GGF       +     +      +  +GQE  P T  +    M IR ++ D  +  
Sbjct: 56  AMGSGGFFVQTERFITAHQGNIN---NVSIYGQESNPTTWKLAAMNMAIRGIDYDFGKYN 112

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +       + ++     K+  + ++NP F        D         +  R+  G+P   
Sbjct: 113 A------DSFTQPQHIDKKMDFIMANPHFN-------DKDWWNESLADDPRWAYGIPPKG 159

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + +  ++ H+   L       GR   VL++  + + +  S E EIR+ ++E DL+EA+VA
Sbjct: 160 NANYAWIQHMIYHLSP----NGRMGFVLANGSMSSSQTNS-EIEIRKAIIEADLVEAMVA 214

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  LF    ++  +W L+  K  +R+G+V  I+A  +           R    D   +I
Sbjct: 215 LPDKLFTNVELSACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LRDFTADDIAKI 269

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEADITWRKLSPLH 511
            D + + +    S   + +    +   +       F+L         E +      +   
Sbjct: 270 ADTFHTWQK---SDGYENQAAFCKSATLEEIKDNDFVLTPGRYVGTAEQEDDGVPFAEKM 326

Query: 512 QSFWLDILKPMMQQIYPYGWAESFV 536
           Q+    + +   +        +  +
Sbjct: 327 QNLTALLKEQFAKSAELEAEIKKNL 351


>gi|126176533|ref|YP_001052682.1| N-6 DNA methylase [Shewanella baltica OS155]
 gi|125999738|gb|ABN63813.1| N-6 DNA methylase [Shewanella baltica OS155]
          Length = 565

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 173/464 (37%), Gaps = 53/464 (11%)

Query: 6   GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +  ++   +WK+A+ L  + +    ++   ++    LR         +  +     + G
Sbjct: 5   ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVTTLPSRG 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFS 121
           G   +L         + +   +     L +    +N    I     NA    E    +  
Sbjct: 65  GKTRELTKEDFSKKSAIFLKPDAQFDALIALTDADNRAEAI----INAMDSIEADYTNLR 120

Query: 122 STIARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           + + + E   +   +      +            +   IYE+ + +F  + +    +F T
Sbjct: 121 NQLPKQEYNNIPNDVLGMLLRTLNPEELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFT 180

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V L   ++                 ++DP CG+GG    + + +A        P  
Sbjct: 181 PVSLVQLLVNVI-----------EPDHGKIFDPACGSGGMFVQSAHFMARHAQD---PHE 226

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLS 297
           L  +G E    T  +    + +  LE +     S       T   D   G      Y ++
Sbjct: 227 LTFYGHEKNRVTTRLAKMNLAVHGLEGNVEGGESA-----ITYYNDPHEGLFGTVDYVMA 281

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPN 351
           NPPF          V+ +   G+  R   GLP      K+S+G+ L++ +  + L    N
Sbjct: 282 NPPFNVD------EVDADKIKGDKHRLPFGLPGVNKNKKVSNGNYLWIQYFYSYL----N 331

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             GRA  V+SS       AG  E+++R  L++   ++ ++ + ++ F+   +   LW L+
Sbjct: 332 DTGRAGFVMSSQA---SSAGRDEAKVREQLVKTGDVDIMIDIRSNFFYTRTVPCQLWFLN 388

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
             K    + KV +++A +++   R   +K    + +Q++ +  +
Sbjct: 389 KNKPAHLKDKVLMLDARNVY---RKVTRKIYDFSPEQQQNLTAV 429


>gi|116511952|ref|YP_809168.1| Type I restriction-modification system methyltransferase subunit
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116107606|gb|ABJ72746.1| Type I restriction-modification system methyltransferase subunit
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 462

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 170/418 (40%), Gaps = 60/418 (14%)

Query: 82  NTSEYSLSTLG-----STNTRNNLESYIASFSDNAK----------AIFEDFDFSST--- 123
              +Y+   L           ++ +    +F+ NAK           +F D +   T   
Sbjct: 5   IAPDYTWEKLVKKIETHKIKASDFQDMFDAFNTNAKRNPTEEDDFANVFSDVNLGDTRLG 64

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +  E+A  L  I    +      D     V+ ++YE+LI +F +   +   +F TP +V
Sbjct: 65  TSTNERAKALNDIVLMINDFAFKDDNG-HDVLGDVYEYLIGQFAANAGKKGGEFYTPHEV 123

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             +   ++                 +YDP  G+G  L      +       +    +   
Sbjct: 124 SQILAKIVTAD-----AHRSQEQFRVYDPAMGSGSLLLTVQKEL----PGGEREGSVEFF 174

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------FHYC 295
           GQEL   T+ +    +++  +          N+++  TL  D    ++        F   
Sbjct: 175 GQELNTTTYNLARMNLMMHDVNYRNM-----NLRRADTLDADWPYDEKEGTQIPRKFDAV 229

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           ++NPP+ +KW  +   +++E    +  RF G G+   S     F++H    L+      G
Sbjct: 230 VANPPYSQKW--ETKTIDRE----KDVRFKGYGVAPASKADYAFVLHGLYHLDNK----G 279

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
             AIVL    LF G     E +IR+ +++N+L++A++ LP +LF+ T+I T + +     
Sbjct: 280 TMAIVLPHGVLFRGA---SEGKIRKNIIDNNLLDAVIGLPANLFYGTSIPTCILVF-KGI 335

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
              ++  V  I+A++ +      GK +  +++D  R I++ Y SR++ +    +    
Sbjct: 336 EARQKRDVLFIDASNDFVK----GKNQNKLSEDNLRTIIETYTSRKDVEKYAHVASLD 389


>gi|330881904|gb|EGH16053.1| Type I restriction-modification system DNA methyltransferase
           subunit [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 482

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 88/483 (18%), Positives = 165/483 (34%), Gaps = 59/483 (12%)

Query: 8   AASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLA 61
              L + +W+ A+ L        +++   +L    LR    R    LE   S++  +  A
Sbjct: 6   LQQLESDLWEAADQLRANSKLTASEYSMPVLGLIFLRHATTRFYALLEEVESSIPAR--A 63

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
            G    D          + Y         L       N+ + I       +    D D +
Sbjct: 64  VGQLREDRIKLGFQGKAAIYLPEIARYEYLAGLPASENIAAAIHEAMQAIEDSVTDQDGN 123

Query: 122 STI-ARLEKA------GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             +   L K        LL  + K F+            V   IYE+ +  F    ++  
Sbjct: 124 KLLAGALPKNYHGLERDLLPDLIKIFNR--PALQNTSGDVFGRIYEYFLNEFAKSGAQEG 181

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V +   ++                T+ DP CG+ G      + + D     
Sbjct: 182 GEFFTPPSLVRMIVKVI-----------EPDHGTVLDPACGSAGMFVQTGHFMEDVRHKL 230

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFH 293
                +  +GQE       +    + +  LE          I  G+T  +D         
Sbjct: 231 THDADITFYGQEKAEVNSKLARLNLAVHGLEG--------KILLGNTFYEDQHQLVGGCD 282

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELG--RFGPGLP-------------KISDGSMLF 338
           + ++NPPF     +      +     +    R   GLP              IS+G+ L+
Sbjct: 283 FVMANPPFNVDGVQVAKIKSQVGTLEDNPPKRLPFGLPGTAGKSRGKDATETISNGNSLW 342

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + +  + L    N  GRA  V+++S      AG+ + +IR+ L+E   ++ ++++    F
Sbjct: 343 IQYFYSYL----NATGRAGFVMAASA---SDAGNKDRDIRQQLIETGHVDVMMSIGPKFF 395

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +  ++   LW     K +ER   V +I+A +++T +                 I  +Y  
Sbjct: 396 YTRSLPCTLWFYDKSKPKERLDGVLMIDARNVYTVVSARSHVFTEEQLSNLSAITWLYRG 455

Query: 459 REN 461
           +  
Sbjct: 456 QSE 458


>gi|294850846|ref|ZP_06791547.1| type I restriction enzyme M protein [Staphylococcus aureus A9754]
 gi|294822296|gb|EFG38764.1| type I restriction enzyme M protein [Staphylococcus aureus A9754]
          Length = 356

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 159/395 (40%), Gaps = 44/395 (11%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           N   +      +   ++ + YE LI RF +   + A +F TP+ V  +   ++ D  D  
Sbjct: 3   NLDDLPFVHSDMEIDMLGDAYEFLIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD-- 60

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                  +R +YDPTCG+G  L              K   +    GQE    T+ +    
Sbjct: 61  ------KLRHVYDPTCGSGSLLLRVG----------KETQVYRYFGQERNNTTYNLARMN 104

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+  +     R  + +I+   TL    F G  F   ++NPP+  KW  D      E  +
Sbjct: 105 MLLHDV-----RYENFDIRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFS 159

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           G        L   S     F+ H+ + L+      G  A+VL    LF G A   E  IR
Sbjct: 160 GY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIR 207

Query: 379 RWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +      
Sbjct: 208 RYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK---- 261

Query: 438 GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
           GK +  ++D Q  +I+D Y  +E   K+S     +        +  P R     ++    
Sbjct: 262 GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPI 320

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
            L+      K      +     +   ++++     
Sbjct: 321 DLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 355


>gi|119471838|ref|ZP_01614171.1| N-6 DNA methylase [Alteromonadales bacterium TW-7]
 gi|119445328|gb|EAW26617.1| N-6 DNA methylase [Alteromonadales bacterium TW-7]
          Length = 698

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 105/604 (17%), Positives = 205/604 (33%), Gaps = 83/604 (13%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            T     L   +W  A++L    D K  ++   +L    L+  +       + +  ++  
Sbjct: 2   NTEQLKKLEKSLWSAADNLRANSDLKSNEYATPVLGLIFLKFADNKYSKVENEIVAEHAK 61

Query: 62  FGGSN-IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-------ASFSDNAKA 113
             GS      S V +    FY         L +     ++   I                
Sbjct: 62  LKGSRREKPLSEVAIEKCGFYLPEHARYDYLLNRPEEEDMAKAIKRAMELVEEHKKELDG 121

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I    ++ +         L  ++ K FS I   P      ++  IYE  + +F     +G
Sbjct: 122 ILPKDEYFALTRT--DRTLPAQLLKTFSDI---PRDATGDILGKIYEFFLGKFALAEGQG 176

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  VV L   ++                T++DP CG+ G    +   + D    
Sbjct: 177 GGVFYTPTSVVRLMVEVI-----------EPYKGTVFDPACGSAGMFVQSQQFIEDHNEE 225

Query: 234 HKIPPILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
             +            +GQE   +T  +    + +  L  +        I+Q ++  ++ F
Sbjct: 226 LDLLGEKHDENKLFVYGQEKTLDTVKLAKMNIAVNGLRGE--------IKQANSYKENPF 277

Query: 288 TG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLP--------------KI 331
              ++F Y L+NPPF        D         +  RF   G+P               +
Sbjct: 278 DSYQKFDYVLANPPFNVDDVPVADV-------EDDIRFNEYGIPKKKTKAKKKDEGKETV 330

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            +G+ L++   A  L+      GRAA+V+++S      A   E++IR+ L+EN+LI  ++
Sbjct: 331 PNGNYLWINLFATSLKEK----GRAALVMANSA---SDARHSEADIRQTLIENNLIYGML 383

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP+++F+   +   LW     K +     +  I+A +++T +       R  + +Q   
Sbjct: 384 TLPSNMFYTVTLPATLWFFDKDKQD---DNILFIDARNVFTQVDRA---HREFSPEQINN 437

Query: 452 I--LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL-- 507
           +  +      +  +F  ++D        + V    +         L  +  D   +    
Sbjct: 438 LAMISKLHKGKRREFVHLIDTYFEKGMDLLVEN--KKQVEPVSEQLLDVLDDKQGKIAVG 495

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV-KASKSFIVAFINAFGR 566
             + Q   L+ L+            +   K  +++       + K  + F  A       
Sbjct: 496 GLVGQWKELNTLQKKHSDYQASVVGKFNDKTLVETINKAQHSLQKNFEPFFAALHQGLKE 555

Query: 567 KDPR 570
            D  
Sbjct: 556 LDKT 559


>gi|288932530|ref|YP_003436590.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642]
 gi|288894778|gb|ADC66315.1| N-6 DNA methylase [Ferroglobus placidus DSM 10642]
          Length = 581

 Score =  233 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 178/467 (38%), Gaps = 48/467 (10%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   L   +   A+ + G      +  V+L F   + L        +A+ E +++ G + 
Sbjct: 86  TRDKLFRSLKAGADLIRGGVD---YK-VLLLFLFYKALSDKW----NALVESFVSEGHTK 137

Query: 67  IDLESFVKVAGYSFYNTSEYSL----------STLGSTNTRNNLESYIASFSDNAKAIFE 116
                      Y  Y+ +E  L           TL          S +     + + + E
Sbjct: 138 TQAYLLANRKYYVLYDENEQKLLTWHEVTKKRETLTELANALTRISRLNEKLSDLEKLVE 197

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F   I+  +    +  I + F+ ++     +P  V+ + Y  ++  F  + ++   +
Sbjct: 198 ILGFKGFISE-DNLHTIESIIQIFNTLDF--SKLPYDVIGDAYMWILNYFAPQKAKE-GE 253

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP ++V L   LL    D         + T+ DP  G+G  L  + ++V +       
Sbjct: 254 NYTPIEIVKLVVNLLDIEVDE-----ESGVVTVLDPALGSGSMLIVSRDYVREKYGKEGE 308

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             ++  +GQE       +    +++  +++         I  G +L+   F   +  Y +
Sbjct: 309 DVLM-LYGQERNEIMGVIAKMNLILHDIKNYE-------IFIGDSLANPRFP--QCDYVV 358

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPP+ + +      +E         +F   LP  +     ++  +            + 
Sbjct: 359 ANPPWNQDY-NVNGLIEDPKVKKIYTQFTSTLPPKNSMDWGWIQLMLYFARK------KV 411

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            I+L +  LF G     E  IR  ++  DLIEA+V LP  LF+ T     + I +  K E
Sbjct: 412 GIILDNGALFRGG---SEKRIREAIVRRDLIEAVVLLPEKLFYNTGAPGCVIIFNKNKPE 468

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           ER+GK+  INA++ +       ++   + +    +I+D Y   ++ K
Sbjct: 469 ERKGKILFINASNEYEKHPEV-RRLNRLGEKNIEKIVDAYREFKDIK 514


>gi|254518116|ref|ZP_05130172.1| type I restriction-modification system DNA methylase [Clostridium
           sp. 7_2_43FAA]
 gi|226911865|gb|EEH97066.1| type I restriction-modification system DNA methylase [Clostridium
           sp. 7_2_43FAA]
          Length = 705

 Score =  233 bits (594), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 86/568 (15%), Positives = 195/568 (34%), Gaps = 66/568 (11%)

Query: 9   ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             +   +W+ A+ L        +++   +L    LR         +  +     +  G  
Sbjct: 5   KKIEKDLWEAADQLRANSKLTASEYSMPVLGLIFLRHAYNRFLVVKEEIEATLPSRNGRK 64

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             +     ++  + Y         L       ++   I     + +   E    +  + +
Sbjct: 65  RPVTQEDFMSKSAIYIPQIARYDYLLDLEEGADIGKAINDAMKSIEE--EYETLAGALPK 122

Query: 127 ---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              +    LL  + + F+  EL        V   IYE+ + +F    ++   +F TP  +
Sbjct: 123 NYNIFDNDLLADLIRIFNSDELQ--RATGDVFGRIYEYFLNKFAMSGAQEGGEFFTPISL 180

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V +   ++                 ++DP CG+ G      + V   G++      +  +
Sbjct: 181 VQMIVNVI-----------EPEGGIVFDPACGSAGMAVQTGHFVESHGNNANDK--ITFY 227

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFG 302
           GQE       +    + +  L           + QG+T  +D      +  + ++NPPF 
Sbjct: 228 GQEKADLNTKLAKMNLAVHGLNG--------KVIQGNTFYEDKHELLGKCDFVMANPPFN 279

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLFLMHLANKLELPPNGGGR 355
                 +       K     R   GLP        +S+G+ L++ +    L       GR
Sbjct: 280 VDGVDSE-------KIKADPRLKYGLPGISSKGKSVSNGNYLWIQYFNTYLNKT----GR 328

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A  V++SS      AG  E +IR  L+ +  ++ I+++  + F+  ++   LW     K 
Sbjct: 329 AGFVMASSA---TDAGGKEKDIRESLVRSGDVDVIISIGNNFFYTRSLPCTLWFFDKNKL 385

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSREN------GKFSR 466
           E+ + KV +I+A +++   R   +     + +Q +    I+ +Y            ++  
Sbjct: 386 EKNKDKVLMIDARNIF---RKVNRTINDFSPEQLKNLTSIVWLYRGENEKYLKLIKEYIV 442

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
               ++             +  ++D+  L    +     +     ++ + + LK + + +
Sbjct: 443 EYSNKSEKINEKSKEFERVLQLLVDQ--LEEFNSFKLIGEEDKEKKAEYYESLKALEKDM 500

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASK 554
             Y   +  +   I+    K      + 
Sbjct: 501 DKYFIDKEKLNNEIQDYLNKVKSYTDNA 528


>gi|224023954|ref|ZP_03642320.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM
           18228]
 gi|224017176|gb|EEF75188.1| hypothetical protein BACCOPRO_00671 [Bacteroides coprophilus DSM
           18228]
          Length = 640

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 101/607 (16%), Positives = 206/607 (33%), Gaps = 80/607 (13%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L   +W++A+ L          +   +L    LR      +   + + +   + GG  +
Sbjct: 6   KLEAELWESADLLRQGSKLTSNQYCMPVLALLFLRYAYSRYKLVEAEILKDRPSRGGRVM 65

Query: 68  DLESFVKVAGYSFYNT--SEYSLSTLGSTNTRN-------------------NLESYIAS 106
            +E     A  + Y    +++        N  +                   N    +  
Sbjct: 66  PVEPSDFEAKSALYLPREAQFDFLVNLPDNITSAGLRNKDGQPVNSLGEAVNNAMQLVEE 125

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            S+    +            +    LL ++ + F+   +  D +   ++  IYE+ + +F
Sbjct: 126 QSEQLTGVLPK------TYTIFADDLLRELLRIFNNKTI--DEIGGDIIGRIYEYFLSKF 177

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              V+     F TP+ +V +   +L                 ++DP CG+GG      + 
Sbjct: 178 AKAVASDDGVFFTPKSLVKMLVNVLEPEQG-----------VMFDPACGSGGMFVQTGDF 226

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V    +       +   GQE       +C+  M +  L          N     +   D 
Sbjct: 227 V--NAAGMNANTQMTFFGQEKVEYNAQLCLMNMAVHGLNGRIVSGDEAN-----SFYHDA 279

Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-------KISDGSMLF 338
           F    +  Y ++NPPF     K + A          GR   GLP       ++ + + L+
Sbjct: 280 FNLAGKCDYVIANPPFNVDKVKSESAFNA-------GRLPFGLPGVNAKTKEVGNANYLW 332

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + +    L    N  GRA  V++SS      + + + +IR  L++   ++ +V++  + F
Sbjct: 333 INYFYAYL----NERGRAGFVMASSA---TDSSNKDRDIREQLVKTGHVDVMVSVGNNFF 385

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +  ++   LW     K EE R KV  I+A   +T +     +         + I+ +Y  
Sbjct: 386 YTLSLPCSLWFFDKAKREENRDKVLFIDARKYYTVVDRTLNEWTEWQLLNLQAIVHLYRG 445

Query: 459 RENGKFSRMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
             +   + +  Y       +       L    +LD     +  + +TW        + + 
Sbjct: 446 ETDKYQALLEKYNQTISEAVNSISEESLSFFPLLDSETAGQFNSSLTWLN---SPWNNYD 502

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
           ++ + +  QI          +E +K  E K +++ A   F               + +T 
Sbjct: 503 ELSRNLNGQIEQTKSCVRLAEERLKKRELKPMRL-AGDKFCKVLEEILTII-EEHEWLTG 560

Query: 577 V--NGEW 581
               GE+
Sbjct: 561 KFGKGEY 567


>gi|312114646|ref|YP_004012242.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219775|gb|ADP71143.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 518

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 177/465 (38%), Gaps = 56/465 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                  L+  ++  A+ LW     +   + + +L    LR++E   E   + +      
Sbjct: 1   MATDLNELSKTLFAAADKLWTNSALRPDQYAQPVLALIALRQMEAKFETVHAQL---APK 57

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-DFDF 120
           F G      +  +  G  F    E   S L +     +L + +    +  K I + + D 
Sbjct: 58  FTGRLKPKPADYQARGAVF-LPPEARFSRLLALPGTADLGAELN---EAMKGIADANPDL 113

Query: 121 SSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           +S + R         L +I +  +     P  +       I+E+ +  F S   +   ++
Sbjct: 114 ASALPRGYGNIPNDTLREILRLLA-----PLKIEGDAYGLIFEYFMGEFASSFMQKGGEY 168

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  +V L   ++                 + DP CG+GG    +   V          
Sbjct: 169 FTPASIVKLIVEVI-----------EPFHGAILDPACGSGGMFVHSAEFVRRHHKA--PA 215

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCL 296
             +   G E   +T  +C   + +  L  D        I++ ++   D      +F + +
Sbjct: 216 SEIAVFGVEKMSDTLRLCRMNLAVHGLSGD--------IREANSYYDDPHKLIGKFDFVM 267

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF +     K  V    K     RF  GLP +++ + L++      L    N  GRA
Sbjct: 268 ANPPFNQPEVDQKRLVNDAGKV--DARFPLGLPSVNNANYLWINQFFAAL----NATGRA 321

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
             V+++S      AG  E EIRR L+++  ++ IVA+  ++F+   +   LW L   K  
Sbjct: 322 GFVMANSA---SDAGGSEREIRRKLIDSGAVDCIVAVGPNMFYTVTLPVTLWFLDKGKAT 378

Query: 417 -ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV 457
            +R  +V  I+A  L+   R E +  R+ + +       I+ ++ 
Sbjct: 379 GKRADEVLFIDARHLF---RQETRAHRVFDPEHIDFLGNIVRLWR 420


>gi|304310387|ref|YP_003809985.1| Type I restriction-modification system DNA methyltransferase
           subunit [gamma proteobacterium HdN1]
 gi|301796120|emb|CBL44326.1| Type I restriction-modification system DNA methyltransferase
           subunit [gamma proteobacterium HdN1]
          Length = 731

 Score =  233 bits (594), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 189/568 (33%), Gaps = 57/568 (10%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +   L N +W+ A+ L         ++   +L    LR  +        A   +  A   
Sbjct: 2   NVQQLENELWEAADQLRANSKLTAAEYSMPVLGLIFLRHADNRF----KAYLPEIEADIP 57

Query: 65  SNIDLESFVKVAGYSF------YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
             +      ++    F      Y         + S      +   I +  D  +A  E  
Sbjct: 58  PQVPAAQREELIKLGFQGKAAIYLPEAARFDRIASLPQGAKVGEIIDAAMDAVEA--EYP 115

Query: 119 DFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
             S  + R     +  LL  + K F    +        V   IYE+ + +F    ++   
Sbjct: 116 VLSGALPRGYAAFEPDLLADLVKIFDRPAI--KAATGDVFGRIYEYFLNKFAMSGAQEGG 173

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V +   ++      +            DP CG+ G      + + D   H  
Sbjct: 174 EFFTPPSLVRMIVGVIEPGHGLVL-----------DPACGSAGMFVQTGHFIEDV-RHQV 221

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHY 294
           +   +  HGQE       +    +++  L+       + NI+QG+T          +  +
Sbjct: 222 VNDSVTFHGQEKSDTNTKLARMNLVVHGLD-------ASNIRQGNTFYDQAEHLIGQCDF 274

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-------SDGSMLFLMHLANKLE 347
            ++NPPF       K    +       GR   GLP         S+ + L++ +    L 
Sbjct: 275 VMANPPFNVDGVDTKKVEAQVDAVANGGRLPFGLPGTNAKTGAISNANSLWVQYFYAYL- 333

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  GRA  V++SS      AG+ + +IR  L++   ++ ++A+    F+  ++   L
Sbjct: 334 ---NDTGRAGFVMASSA---SDAGNKDRDIREQLVKTGHVDVMMAIGNKFFYTRSLPCTL 387

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           W     K ++ + +V +I+A +++T +                 I+ ++      KF  +
Sbjct: 388 WFFDKGKPQDLQNQVLMIDARNVYTVVSARSHVFTDEQLANLNAIVWLHRGERE-KFIAL 446

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI-TWRKLSPLHQSFWLDILKPMMQQI 526
           +              P R+    D   +  L A +  +   + L +          + Q 
Sbjct: 447 VARYQRQVDDWLAAIPARI--EADTAAVQTLAAPLQAFANQATLAELNADQAEDARIAQA 504

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASK 554
               +          +  A  +    S 
Sbjct: 505 QLDAFKAELTTAQTDTATADAIAALLSA 532


>gi|304310051|ref|YP_003809649.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301795784|emb|CBL43983.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 713

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 172/462 (37%), Gaps = 49/462 (10%)

Query: 6   GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +  ++   +WK+A+ L  + +    ++   ++    LR         +  +     + G
Sbjct: 5   ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRYLSVKDEIVATLPSRG 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           G   +L         + Y   E     L +    +N    I    D+ +A  +  +  + 
Sbjct: 65  GKTRELTKEDFSKKSAIYLKPEAQFDYLIALTDADNRAEAIIHAMDSIEA--DYTNLRNQ 122

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + + E   +   +      +            +   IYE+ + +F  + +    +F TP 
Sbjct: 123 LPKQEYNNIPNDVLGMLLRTLNPEELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFTPV 182

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L                 ++DP CG+GG    + + +         P  L 
Sbjct: 183 SLVQLIVNVL-----------EPDHGKIFDPACGSGGMFVQSAHFMERHAQD---PHELT 228

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299
            +G E    T  +    + +  LE +     +       T   D   G      Y ++NP
Sbjct: 229 FYGHEKNRVTTRLAKMNLAVHGLEGNVEGGEAA-----ITYYNDPHEGLFGTVDYVMANP 283

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGG 353
           PF          V+ +   G+  R   GLP      K+S+ + L++ +  + L    N  
Sbjct: 284 PFNVD------EVDADKIKGDKRRLPFGLPGVNKNKKVSNANYLWIQYFYSYL----NDT 333

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+SS       AG  E+++R  L++   ++ +V +  + F+   +   LW L+  
Sbjct: 334 GRAGFVMSSQA---SSAGRDEAKVREQLVKTGHVDIMVDIRGNFFYTRTVPCQLWFLNKN 390

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           K    + KV +++A +++   R   +K    + +Q++ +  +
Sbjct: 391 KPAHLKDKVLMLDARNVY---RKVTRKIYDFSPEQQQNLTAV 429


>gi|258515812|ref|YP_003192034.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779517|gb|ACV63411.1| type I restriction-modification system, M subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 584

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 164/424 (38%), Gaps = 58/424 (13%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            SF    + +F + +  S   +L      +  +L  I    +   L   T    ++ N Y
Sbjct: 178 ESFDSAFRGLFSEVNLDS--DKLGRNYEARNTMLCSIITEIAE-GLSEFTNETDLLGNAY 234

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+LI +F S   + A +F TP+ + ++ + +++             I  L D  CG+   
Sbjct: 235 EYLIGQFASGSGKKAGEFYTPQQISNILSRIVILDSQDPSTGKKPYINNLLDFACGSASL 294

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L +   H+       +   I   +GQE    T+ +    ML+        +D    I  G
Sbjct: 295 LINVKKHL-------EPNSISQIYGQEKNITTYNLARMNMLLH-----RFKDSEFQIFHG 342

Query: 280 STLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPK 330
            +L  D             +    ++NPPF  +WE +           E  RF   GL  
Sbjct: 343 DSLLNDWDILNEMNPAKKLKCDAVVANPPFSYRWEPNDT-------LAEDFRFKSYGLAP 395

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S     FL+H  + L       G  AI+L    LF G A   E +IR  LLE+  I+ I
Sbjct: 396 KSAADFAFLLHGFHFLSDE----GTMAIILPHGVLFRGGA---EEKIRTKLLEDGNIDTI 448

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           + LP +LFF T I   + +L   K   +   V  INA++ +      GK++ I+  +   
Sbjct: 449 IGLPANLFFSTGIPVCILVLKKCK---KFDDVLFINASEYFDK----GKRQNILLPEHID 501

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +I+D Y  R+               RR+ +    +  F L+ +      A+     L+ +
Sbjct: 502 KIVDTYQFRKEEDK--------KYSRRVSMKEIEKNGFNLNISRYVSTAAEEEIVDLADV 553

Query: 511 HQSF 514
            +  
Sbjct: 554 KKKL 557



 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
          M +       L   +W  A+ L G     DF   +L F  LR L    E       
Sbjct: 1  MNDTQQK--QLGATLWAIADKLRGAMNPDDFRDYMLSFLFLRYLSDNYEEAAKKEL 54


>gi|254234630|ref|ZP_04927953.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719]
 gi|126166561|gb|EAZ52072.1| N-6 DNA methylase [Pseudomonas aeruginosa C3719]
          Length = 519

 Score =  231 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/459 (19%), Positives = 162/459 (35%), Gaps = 65/459 (14%)

Query: 15  IWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF 72
           +W  A+ LW +   +  +F   +L    LR  E         +              +  
Sbjct: 10  LWAVADQLWANTGLRPGEFSVPVLGLIFLRYAEKMYAAAEEKLGPIGSGGRRKVSKDDYL 69

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LE 128
              A    +   +   S L +    + +   I       +   E+ D    + R    L 
Sbjct: 70  ---AEGVIFLPEKARFSYLQTLTEGDVIGLAINEAMKAVEE--ENVDLKGALPRNYVQLG 124

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              +L ++ K        P  +       +YE+ +  F  +  +    F TP  +V L  
Sbjct: 125 -NKVLLELIKLLG-----PVDLSGDAFGKVYEYFLGNFALKEGQKGGVFYTPESIVKLIV 178

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++                 ++DP CG+GG    + + V            +   G E E
Sbjct: 179 EII-----------EPFHGRIFDPACGSGGMFAQSADFVKRHHKTAMEE--ISIFGTEKE 225

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFHYCLSNPPFGK 303
             T  +    + +  L  D        ++  +T  +D        G RF + ++NPPF  
Sbjct: 226 QVTVNLNKMNLAVHGLSGD--------VRIANTYYEDPHEAVTRDGGRFDFVMANPPFNV 277

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                   V+KE   G   RF  G+PK  + + L++      L    N  GRA  V+++S
Sbjct: 278 S------GVDKERLEG-DLRFPFGVPKTDNANYLWIQLFYASL----NQNGRAGFVMANS 326

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT--EERRGK 421
               G A   E  IR+ L+E+  ++ IV++ ++ F+   +   LW     K    ER  K
Sbjct: 327 A---GDARGSEQVIRQKLIESGAVDVIVSVGSNFFYTVTLPCTLWFFDRAKERDAERADK 383

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYV 457
           V  I+A  ++   R   +  R    +Q      ++ +Y 
Sbjct: 384 VLFIDARHIY---RQIDRAHRDWLPEQIEFLANVVRLYR 419


>gi|225573220|ref|ZP_03781975.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039352|gb|EEG49598.1| hypothetical protein RUMHYD_01411 [Blautia hydrogenotrophica DSM
           10507]
          Length = 606

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 194/551 (35%), Gaps = 76/551 (13%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L   +W++A+ L          +   +L    LR      +   + + +   + GG  +
Sbjct: 6   KLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRYKMVETEILKNRPSRGGRVM 65

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NLESYIAS 106
            LE+    A  + Y   E     L     +  +                   N    I  
Sbjct: 66  PLEASDFAAKSALYLPKEAQYDYLLNLPDDIASAAILNKDGHTMNSLGEVVNNAMQLIEE 125

Query: 107 FSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            S+    +      DFS  I        L ++ + F+   L  D V   ++  IYE+ + 
Sbjct: 126 QSEQLTGVLPKSYTDFSDEI--------LSELLRIFNNSAL--DEVGGDIIGRIYEYFLN 175

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F   ++     F TP+ +V +   ++                 L DP CG+GG    + 
Sbjct: 176 KFAKNIASDDGVFFTPKSLVKMIVNII-----------EPKSGILLDPACGSGGMFIQSG 224

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + V    S       +  +GQE       +C+  M +  L    +     N     +   
Sbjct: 225 DFV--NHSGMNANNTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEAN-----SFYY 277

Query: 285 DLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI------SDGSML 337
           D         Y ++NPPF     K + A          GR   G P +      S+G+ L
Sbjct: 278 DAHNLNGCCDYVMANPPFNVDKVKAESAESA-------GRLPFGTPAVNKNKEISNGNYL 330

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ +  + L    N  GRA  V++SS      +   + +IR  L++   ++ +V++  + 
Sbjct: 331 WISYFYSYL----NENGRAGFVMASSA---TDSQGKDKDIREKLVKTGHVDVMVSVGNNF 383

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+  ++   LW     K+EE + KV  I+A + +T +     +           I+ +Y 
Sbjct: 384 FYTKSLPCSLWFFDKGKSEETKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYR 443

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRM--SFILDKTGLARLEADITWRKLSPLHQSFW 515
                    + +Y+    + I     L +    + D    A++E     R      Q ++
Sbjct: 444 GEIEKYHQLIAEYKNVLGKAISFEESLHLLKEELKDLQKRAKIEMKAAGRNDKKRVQVYY 503

Query: 516 LDILKPMMQQI 526
            +++    ++I
Sbjct: 504 DELIAAKNEEI 514


>gi|32476949|ref|NP_869943.1| type I restriction-modification system DNA methylase
           [Rhodopirellula baltica SH 1]
 gi|32447497|emb|CAD79086.1| type I restriction-modification system DNA methylase
           [Rhodopirellula baltica SH 1]
          Length = 720

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 100/586 (17%), Positives = 213/586 (36%), Gaps = 76/586 (12%)

Query: 9   ASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF---G 63
             L   +W  A++L        +D+   +L    LR  E   +     + E   A     
Sbjct: 18  EKLEADLWSAADNLRANSKLTSSDYFMPVLGIIFLRHAENRFDVATRQIEEDKAAGRMPK 77

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSS 122
              ID +   + A     + + +      +T+    L + +   +D  +AI E FD    
Sbjct: 78  RKVIDQDYVRRRA-LPLPDEARFDWIMQMATSGDKPLPALV---TDAMRAIEEKFDPLKG 133

Query: 123 TIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            + +   + +  +L  + + F+  ++        V   IYE+ + RF  + +    +F T
Sbjct: 134 VLPKDYGIFEPQVLEDLMRLFNSEQIR--QATGDVFGRIYEYFLARFSIQKAHDNGEFFT 191

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V +   ++                 ++DP CG+GG    + + +   G        
Sbjct: 192 PSSLVQMLVNVI-----------EPDHGKVFDPACGSGGMFVQSSHFIEHEGGD--TAKR 238

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSN 298
            V +GQE  P+T  +    + +  L  +        I +  T  +D         + ++N
Sbjct: 239 AVFYGQEKNPDTIRIAKMNLAVHGLTGE--------IGEAITYYEDQHNLVGGADFVMAN 290

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNG 352
           PPF          V+ E    +  R   GLP      K+++G+ L++ +  + L      
Sbjct: 291 PPFNVDL------VDAERIKTDTDRLPFGLPGVNKQKKVANGNYLWISYFWSYLNEK--- 341

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRA  V+SS       AG GE ++R  ++    ++ ++++ ++ F+  ++   LW    
Sbjct: 342 -GRAGFVMSSQA---SSAGHGEKDVRERIVRTGDVDVMMSIRSNFFYTRSVPCELWFFDR 397

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVSRENGKFSRMLD 469
            K + +R  V +++A  ++   R   +       +Q      I+ +Y  ++     R + 
Sbjct: 398 GKPKAQRDHVLMVDARSVY---RKVNRTINDFAPEQMANLSSIVWLYRGQKK----RFVA 450

Query: 470 YRTFGYRRIKVL--------RPLRMSFILDKTGLARLEADITWRKL-SPLHQSFWLDILK 520
                   I +         + L  +        +    ++   KL +   +   L  + 
Sbjct: 451 LVQRYLHSINIETQGCEPPLQELESTLDSVNDKTSAFVKELQRCKLVADAEKEPILAAVT 510

Query: 521 PMMQ-QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            + +         +S  K+ +   + K  K  A+     + + AF 
Sbjct: 511 ELQEADTAYRKDRQSLWKDLVAYRKGKNEKPPATTKPQRSALAAFT 556


>gi|254167129|ref|ZP_04873982.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|197623985|gb|EDY36547.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
          Length = 573

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 89/537 (16%), Positives = 201/537 (37%), Gaps = 62/537 (11%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T+ +    +L   +   A  + G      +  V+L F   + L             +   
Sbjct: 80  TKTSSKRDTLIKTLKAGANYIRGGVD---YK-VLLIFLFYKALSDIW-------LAQVEK 128

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFS------ 108
           +            +A   +Y   +     L        S  T   L + I   S      
Sbjct: 129 YMREGFTKTQAYLLANSDYYTLYDEDEQKLLTWHEVTKSRETTIELANAITRISRLNEKL 188

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            + + + +   F   I   +    +  I   F+ ++     +   V+ + Y  ++  F  
Sbjct: 189 SDLQKLVDVLGFRGFINE-DNLHNIESIVDIFNSLDF--SKLSYDVIGDAYMWILNYFAP 245

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + ++   +  TP+++V L   LL   +            T+ DP  G+G  L ++  +V 
Sbjct: 246 QKAKE-GENYTPQEIVKLLVNLLDIQN----------GSTVLDPALGSGSMLIESWMYVR 294

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D     +    ++ +GQE       V    +++  +++        +I  G +L+   F 
Sbjct: 295 DNNKEAE----MMLYGQERNEIMGIVAKMNLILHDIKNY-------DIYIGDSLANPRF- 342

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +   Y ++NPP+  K+  +    +   K       G G P  +     ++  +      
Sbjct: 343 -QSCDYVIANPPWNLKYNVNALKQDPRVKKIYTTFVGNGFPSKNSMDWAWIQLMLY---- 397

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                 +  I+L +  LF G     E +IR  +++ DLIEA++ LP  LF+ T+ A  + 
Sbjct: 398 --FSNKKVGIILDNGALFRGGK---EKKIREGIVKKDLIEAVILLPEKLFYNTSAAGAVI 452

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
           I +  K E+R+ KV +INA++ +       ++   + D+  ++I+  Y   ++ + F+++
Sbjct: 453 IFNKNKPEDRKRKVIIINASNEYEKHPEV-RRLNKLGDEHIKKIVKAYRDFKDIEGFAKV 511

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +           +   L +S  +++  +   E    ++++         + +  + +
Sbjct: 512 VSIEEIEKNDFNLNVSLYVSPKVEEEDIDLQEEMQKFKEIEEKETKTVQEAVSYVEE 568


>gi|223040255|ref|ZP_03610533.1| type I restriction-modification system, M subunit [Campylobacter
           rectus RM3267]
 gi|222878508|gb|EEF13611.1| type I restriction-modification system, M subunit [Campylobacter
           rectus RM3267]
          Length = 598

 Score =  230 bits (587), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 98/436 (22%), Positives = 165/436 (37%), Gaps = 57/436 (13%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYK--ICKNFSGIELHPDTVPD--RVMSNIYE 160
            SF      +F + +  S   +L K   L    +C   + I        +   ++ N YE
Sbjct: 192 ESFDSTFYGLFSEVNLDS--DKLGKNYQLRNEMLCSIITEIAEKLAEFTNEIDLLGNAYE 249

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI +F +   + A +F TP+ + ++ + +++             I  L D  CG+G  L
Sbjct: 250 YLIGQFAAGSGKKAGEFYTPQQISNILSRIVILDSHKPELGKRDFINNLLDFACGSGSLL 309

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +   H+       +   I   +GQE    T+ +    ML+   +     D    I  G 
Sbjct: 310 INVKKHL-------EPNSISQIYGQEKNITTYNLARMNMLLHGFK-----DSEFQIFHGD 357

Query: 281 TLSKDL--------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKI 331
           +L  D                  ++NPPF  +WE D           E  RF   GL   
Sbjct: 358 SLLNDWSLLNEMNPAKKLECDAVVANPPFSYRWEPDDT-------LAEDFRFKSYGLAPK 410

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H  + L       G  AI+L    LF G A   E +IR  LL++  I+A++
Sbjct: 411 SAADFAFLLHGFHFLSK----NGTMAIILPHGVLFRGGA---EEKIRTKLLKDGNIDAVI 463

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T I   + +L   K       V  INA++ +      GK++ ++  +   +
Sbjct: 464 GLPANLFFSTGIPVCILVLKKCKEP---DDVLFINASEYYEK----GKRQNVLLPEHIDK 516

Query: 452 ILDIYVSRENGK--FSRMLDYRTF---GYR----RIKVLRPLRMSFILDKTGLARLEADI 502
           I++ Y  R      +SR +        GY     R     P      +++        + 
Sbjct: 517 IVETYQFRREDDKRYSRRVSMGEIEKNGYNLNISRYVSTAPKEEIIDIEEVAKELRTIEY 576

Query: 503 TWRKLSPLHQSFWLDI 518
             +K    H  F  ++
Sbjct: 577 DIKKAKDAHNIFLKEL 592



 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKYLAFGGS 65
              L + +W  A+ L G     DF   +L F  LR L    E      + ++Y+     
Sbjct: 5  QQKQLGSALWGIADKLRGTMNADDFRDYMLSFLFLRYLSDNYETAANKELGKEYMDCEKE 64


>gi|224417842|ref|ZP_03655848.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253827182|ref|ZP_04870067.1| type I restriction-modification system methyltransferase subunit
           [Helicobacter canadensis MIT 98-5491]
 gi|313141384|ref|ZP_07803577.1| type I restriction-modification system [Helicobacter canadensis MIT
           98-5491]
 gi|253510588|gb|EES89247.1| type I restriction-modification system methyltransferase subunit
           [Helicobacter canadensis MIT 98-5491]
 gi|313130415|gb|EFR48032.1| type I restriction-modification system [Helicobacter canadensis MIT
           98-5491]
          Length = 596

 Score =  229 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 157/389 (40%), Gaps = 54/389 (13%)

Query: 102 SYIA--SFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            YI   SF    + +F + +  S   +L     E+  LL ++    +   L        +
Sbjct: 185 KYIENESFESRFRGLFSEVNLDS--DKLGKNYSERNILLCQVITEIAQ-GLSKFPNETDL 241

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI +F +   + A +F TP+ V  + + ++              ++ + D  C
Sbjct: 242 LGDAYEYLIGQFAAGSGKKAGEFYTPQQVSTILSRIVSLDSQDPSTGKKSKLKNILDFAC 301

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +                I   +GQE    T+ +    ML+  ++     D   
Sbjct: 302 GSGSLLINVRK-------QFGANSIGQIYGQEKNITTYNLARMNMLLHGVK-----DSEF 349

Query: 275 NIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG- 325
            I  G +L  D             +F   ++NPPF  +W+  +       +  E  RF  
Sbjct: 350 QIHHGDSLLNDWNILNEMNPAKKMQFEVVVANPPFSYRWQPKE-------EMAEDFRFKN 402

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            GL   S     FL+H  + L       G  AI+L    LF G     E +IR  LLE+ 
Sbjct: 403 YGLAPKSAADFAFLLHGFHFLSDD----GTMAIILPHGVLFRGGV---EEKIRTKLLEDG 455

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            I+AI+ LP +LFF T I   + +L   K       V +INA++ +      GK++ I+ 
Sbjct: 456 NIDAIIGLPANLFFSTGIPVCVLVLKKCKKY---DDVLIINASEYFEK----GKRQNILL 508

Query: 446 DDQRRQILDIYVSRENGK--FSRMLDYRT 472
            +   +I++ Y  R+     +SR +  + 
Sbjct: 509 PEHIDKIIETYQYRKEDDKKYSRRVSMKE 537



 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP 50
              L + +W  A+ L G     DF   +L F  LR L    E 
Sbjct: 5  QQKKLGSTLWAIADKLRGAMNADDFRDYMLSFLFLRYLSDNYEE 48


>gi|160939174|ref|ZP_02086525.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438137|gb|EDP15897.1| hypothetical protein CLOBOL_04068 [Clostridium bolteae ATCC
           BAA-613]
          Length = 496

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 104/562 (18%), Positives = 196/562 (34%), Gaps = 81/562 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E T +   + + +W     L  D     +G  +   T L  L          + ++Y 
Sbjct: 1   MLEQTTT---IISKVWGMCNPLRDDGVS--YGDYLEQLTYLIFL---------KMSDEYA 46

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLST---LGSTNTRNNLESYIASFSDNAKAIFED 117
                      + +  G      S Y+ S    L      +  ++ +    + A  I   
Sbjct: 47  K--------PPYKRDTG----IPSGYTWSDMNTLKGAELEDQYKATLEKLGEQA-GILGQ 93

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F   + ++  A +LY++ +  +  +     +   V   IYE L+++   ++  GA  +
Sbjct: 94  I-FKGAVNKISNAAILYRVVQMINNEKWV--AMSSDVKGEIYEGLLQKNAEDIKSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------ 231
            TPR ++      L           P  ++T+ DP CG+GGF   A + +AD        
Sbjct: 151 FTPRPLIRAMVRCL----------RPEPMKTIADPCCGSGGFFLAAQSFLADPNNYALDR 200

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +G E+ P T+   +  + +  +           I  G  L  D   G R
Sbjct: 201 EQKGFLKNETFYGNEIVPATYKTALMNLYLHNIGDIYGNVP---ITLGDALLTD--PGYR 255

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELP 349
             Y ++NPPFGKK        E E ++ +    R        S+  + F+ H+   L+  
Sbjct: 256 VDYVMTNPPFGKKSSITFTNEEGEQEDEDLVYNRQDFWTT-SSNKQLNFVQHINTILK-- 312

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+AA+V+  + LF G AG     +R+ LLE   +  I+ LPT +F++  +   +  
Sbjct: 313 --ATGKAAVVVPDNVLFEGGAG---EVVRKKLLETTDLHTILRLPTGIFYKPGVKANVLF 367

Query: 410 LSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFS 465
              R    + +  +V + +             K+  + D      +  Y   +R     +
Sbjct: 368 FDKRPASAQRQTKEVWIYDLRTNIHFT----LKQHPMTDADLEDFVCCYHPENRYERTET 423

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
              D     +R+  +   +            +   DI W K   L     L     +   
Sbjct: 424 YSADNPDGRFRKFSIEEIMER---------DKTSLDIFWIKDKSLADLDNLPSPDELAND 474

Query: 526 IYPYGWAESFVKESIKSNEAKT 547
           I     +      ++++   K 
Sbjct: 475 IIENLQSALDSFTALQAQLNKG 496


>gi|254787777|ref|YP_003075206.1| typeI restriction-modification system, methylase subunit
           [Teredinibacter turnerae T7901]
 gi|237683921|gb|ACR11185.1| putative TypeI restriction-modification system, methylase subunit
           [Teredinibacter turnerae T7901]
          Length = 716

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 95/588 (16%), Positives = 200/588 (34%), Gaps = 76/588 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            +  ++   +WK+A+ L  + +    ++   ++    LR         +  +     +  
Sbjct: 5   ENIEAIEKRLWKSADTLRANSELASNEYFLPVMGLIFLRHAYSRFLSVKDDIVATLPSRS 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
           G   +L         + Y   E     L +    +N    I    D+ +A  +  +  + 
Sbjct: 65  GKTRELTKEDFSKKSAIYLKPEAQFDYLIALTDADNRAEAIIHAMDSIEA--DYTNLRNQ 122

Query: 124 IARLEKAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           + + E   +   +      +            +   IYE+ + +F  + +    +F TP 
Sbjct: 123 LPKQEYNNIPNDVLGMLLRTLNPDELKKATGDIFGRIYEYFLTQFADQGAHDGGEFFTPV 182

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +V L   +L                 ++DP CG+GG    + + +         P  L 
Sbjct: 183 SLVQLIVNVL-----------EPDHGKIFDPACGSGGMFVQSAHFMERHAQD---PHELT 228

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNP 299
            +G E    T  +    + +  LE +     +       T +++   G      Y ++NP
Sbjct: 229 FYGHEKNRVTTRLAKMNLAVHGLEGNVEGGEAAITYY--TFAQEPHEGLFGTADYVMANP 286

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGG 353
           PF          V+ E    +  R   GLP      K+S+ + L++ +  + L    N  
Sbjct: 287 PFNVD------EVDAEKIKADKRRLPFGLPGVNKNKKVSNANYLWIQYFYSYL----NDT 336

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRA  V+SS       AG  E+++R  L++   ++ +V +  + F+   +   LW L+  
Sbjct: 337 GRAGFVMSSQA---SSAGRDEAKVREQLVKTGHVDIMVDIRGNFFYTRTVPCQLWFLNKN 393

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-----------------Y 456
           K    + KV +++A +++   R   +K    + +Q++ +  +                 Y
Sbjct: 394 KPAYLKDKVLMLDARNVY---RKVTRKIYDFSPEQQQNLTAVVWLYRGEGARFIALLQEY 450

Query: 457 VSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           V+R     +         +            +   L K  +A        +K   +    
Sbjct: 451 VTRALREAEHCHQWPEDDY-------EPVAEVIAQLTKIKIATQPFMQQLKK-EGVEADT 502

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           + D    +      +   +    +     E K L+   S   I  FI 
Sbjct: 503 FADFAAALTLVEGSWKEFDDVAYDLGTEWEKKPLR---SVKGIKTFIE 547


>gi|298253897|ref|ZP_06977484.1| type I restriction-modification system, methyltransferase subunit
           [Gardnerella vaginalis 5-1]
 gi|297532040|gb|EFH71015.1| type I restriction-modification system, methyltransferase subunit
           [Gardnerella vaginalis 5-1]
          Length = 535

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 116/557 (20%), Positives = 214/557 (38%), Gaps = 62/557 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAV 55
           E    A ++ + ++   + L        F     ++L    LR +    E  +E  R  +
Sbjct: 5   ETAEKALNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIESLRKTL 64

Query: 56  REKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDN 110
            E+ L     NI    F     A  ++    E   ST+ +T        L++ ++   + 
Sbjct: 65  IEQGLDPDDENIRAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSRLEEE 124

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +   F   +   R   A  + KI    + I          ++  +YE+ ++ F    
Sbjct: 125 DPQLKGCFIKGTFTTRNLAANDIKKIVDEVNKISHKAFGEEKDLIGYVYEYFLKEFAVNA 184

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           ++   +F TP DVV L  A++                TLYDP CG+GG    +   V   
Sbjct: 185 TKEEGEFYTPHDVVKLIAAMI-----------EPFEGTLYDPACGSGGMFIQSAELVKSK 233

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +      +  +GQE E  T+ +    + +R +  +            S+ + DL  G 
Sbjct: 234 QGNLN---SINIYGQEKEAATYRLAKMNLALRGISHNLGGTN------DSSFTHDLHKGL 284

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELP 349
            F+Y ++NPPF  K   D++            R+   G P  S+ +  +++H+ + L+  
Sbjct: 285 YFNYIMANPPFNLKGWYDEN-------LKNDPRWADYGTPPESNANYAWILHILSHLKPS 337

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A  +L++  L +        EIR+ L++ND +EAI+ LP +LF  T+I+  LWI
Sbjct: 338 ---NGVAGFLLANGALNDSDT----LEIRKRLIQNDKVEAIIVLPRELFITTDISVTLWI 390

Query: 410 LSNRKT---------EERRGKVQLINATDLWT-SIRNEGKKRRIINDDQRRQILDIYVSR 459
           L+  K            R  ++  ++       +++ E KK+  ++ +Q +   DIY + 
Sbjct: 391 LNQNKNGGKYHDRNLRNRDHEILFMDLRTWTEHAVKGENKKKVRLSAEQIQHAADIYHTW 450

Query: 460 E-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFW 515
           +  G            YR + +       + L  +          DI + K     Q+  
Sbjct: 451 QSEGTDGNNYAVPEL-YRSVGMPEIDSKDWALTPSKYIEFIDHDLDIDYEKEMARIQAEM 509

Query: 516 LDILKPMMQQIYPYGWA 532
            DIL+   +       A
Sbjct: 510 KDILREEKESQKMLEDA 526


>gi|294793237|ref|ZP_06758383.1| putative modification enzyme transmembrane protein [Veillonella sp.
           6_1_27]
 gi|294456182|gb|EFG24546.1| putative modification enzyme transmembrane protein [Veillonella sp.
           6_1_27]
          Length = 616

 Score =  228 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 170/482 (35%), Gaps = 70/482 (14%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L N +W+ A+ L          +   +L    LR      +     + +      G  +
Sbjct: 6   KLENELWEAADALRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLIEVEILKDRPMRNGRVM 65

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLG--STNTR-------------------NNLESYIAS 106
            +E+    A  + Y   E     L     + +                   NN  + I  
Sbjct: 66  PVEASDFKAKSALYLPLEAQYDYLLNLPEDIKGAALTSKDGQVMTSLGEVVNNAMALIEE 125

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            S     I    +++     L     L +I + F+   L  D V   ++  IYE+ + +F
Sbjct: 126 QSSQLTGILPK-NYTDFSDEL-----LAEILRIFNNSAL--DEVGGDIIGRIYEYFLNKF 177

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              ++     F TP+ +V +   +L                TL+DP CG+GG    + + 
Sbjct: 178 AKNIASDDGVFFTPKSLVKMIVNVL-----------EPTHGTLFDPACGSGGMFIQSGDF 226

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   G +      +  +GQE       +C+  M +  L    +        +G++   D 
Sbjct: 227 VNSHGLNANT--TMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGD-----EGNSFYNDA 279

Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFL 339
              + R  Y ++NPPF     K +            GR   G+P      +I + + L++
Sbjct: 280 HQLEGRCDYIMANPPFNVDKVKSESTQAA-------GRLPFGMPGVNKNKEIGNANYLWI 332

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +  + L    N  GRA  V++SS      +   +  IR  L++   ++ +V++  + F+
Sbjct: 333 SYFYSYL----NDTGRAGFVMASSA---TDSQGKDKNIRESLVKTGAVDVMVSVGNNFFY 385

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             ++   LW     K +    KV  I+A + +T +     +           I+ +Y   
Sbjct: 386 TKSLPCSLWFFDRAKPDAIEDKVLFIDARNYYTVVDRTLNEWTEWQLKNLNAIVWLYRGE 445

Query: 460 EN 461
             
Sbjct: 446 VE 447


>gi|312872335|ref|ZP_07732405.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311092158|gb|EFQ50532.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 535

 Score =  227 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 113/564 (20%), Positives = 213/564 (37%), Gaps = 70/564 (12%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPT 51
           M +   +  +L   + ++   + L        F     ++L    LR +    E  +E  
Sbjct: 1   MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL 60

Query: 52  RSAVREKYLAFGGSNIDLESFVKVA--GYSFYNTSEYSLSTLGST---NTRNNLESYI-- 104
           R  + E+ L    +NI    F        ++    E   ST+ +T        L++ +  
Sbjct: 61  RKTLIEQGLDPDDANIKAAFFDDATFTDGTYSLPVEARWSTIINTPAPKLNVALDTALSK 120

Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             +     K  F    F++    L    +  KI    + I          ++  +YE+ +
Sbjct: 121 LEAEDPQLKGCFIKGTFTT--RNLAANDI-KKIVDEVNKISHKAFGKEKDLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F    ++   +F TP DVV L  A++                TLYDP CG+GG    +
Sbjct: 178 KEFAVNATKEEGEFYTPHDVVKLIAAMI-----------EPFEGTLYDPACGSGGMFIQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V     +      +  +GQE E  T+ +    + +R +  +            S+ +
Sbjct: 227 AELVKSKQGNLN---SINVYGQEKEAATYRLAKMNLALRGISHNLGGTN------DSSFT 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHL 342
            DL  G  F Y ++NPPF  K   D++            R+   G P  S+ +  +++H+
Sbjct: 278 HDLHKGLYFDYVMANPPFNLKGWYDEN-------LKNDARWADYGTPPESNANYAWILHI 330

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L+      G A  +L++  L +        EIR+ L++ND +EAI+ LP +LF  T+
Sbjct: 331 LSHLKPS---NGVAGFLLANGALNDSDT----LEIRKKLIQNDKVEAIIVLPRELFITTD 383

Query: 403 IATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQI 452
           I+  LWIL+  K            R  ++  ++      +      K++  ++ DQ ++ 
Sbjct: 384 ISVTLWILNQNKKGGKYHGRNLRNREHEILFMDLRTWTENAVKGENKKKVRLSADQIQRA 443

Query: 453 LDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLS 508
            +IY + +  G            YR + ++      + L  +          DI + K  
Sbjct: 444 ANIYHTWQSEGTDGNNYAVPEL-YRSVGMVEIESKGWALTPSKYIEFIDHDLDIDYEKEM 502

Query: 509 PLHQSFWLDILKPMMQQIYPYGWA 532
              Q+   D+L+   +       A
Sbjct: 503 ARIQAEMKDLLREEKESQKMLEDA 526


>gi|329575569|gb|EGG57106.1| putative type I restriction-modification system, M subunit
           [Enterococcus faecalis TX1467]
          Length = 357

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 141/312 (45%), Gaps = 39/312 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ + YE LI +F SE  + A +F TP  V  +    +    +         + +++DPT
Sbjct: 1   MIGDAYEFLISQFASEAGKKAGEFYTPHQVSDMMARSVALGQED------KKLFSVFDPT 54

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T       +++  +E++      
Sbjct: 55  MGSGSLMLNVRNYL-------NYPKSVKYHGQELNTTTFNHAKMNLILHGVEAEDM---- 103

Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T + + +   + NPP+  KW  D   ++         R+G  L   
Sbjct: 104 -NLRNGDTLNKDWPTDEPYTFDSVVMNPPYSAKWSADASFLDDSR----FNRYG-KLAPK 157

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 158 SKADFAFLLHGYYHLKDS----GTMAIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVI 210

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + IL   +       V  I+A+  +T     GK +  +  +   +
Sbjct: 211 GMPANLFFGTSIPTTVIILKKNRDNR---DVLFIDASKEFTK----GKNQNKLAPEHIDK 263

Query: 452 ILDIYVSRENGK 463
           I+  Y+ R++ +
Sbjct: 264 IVSTYIERQDVE 275


>gi|154500306|ref|ZP_02038344.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC
           29799]
 gi|150271038|gb|EDM98312.1| hypothetical protein BACCAP_03973 [Bacteroides capillosus ATCC
           29799]
          Length = 622

 Score =  226 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 96/577 (16%), Positives = 195/577 (33%), Gaps = 88/577 (15%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L   +W++A+ L          +   +L    LR      +   + + +     GG  +
Sbjct: 6   KLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLVEAEILKDRPMRGGRVL 65

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLG--STNT-------------------RNNLESYIAS 106
            +E+    +  + +   E   + L     N                     NN    +  
Sbjct: 66  PVEASDFASRSALFLPREAQYAYLVELPENIPAAGLTNWRGEVMNSLGEVVNNAMELVEQ 125

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            S+    +            +    LL ++ + F+   L  D V   ++  IYE+ + +F
Sbjct: 126 QSEQLSGVLPKDY------TMFSDELLAELLRIFNNSAL--DEVGGDIVGRIYEYFLNKF 177

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              +++    F TP+ +V +   +L                 L DP CG+GG      + 
Sbjct: 178 AKNIAQDDGVFFTPKSLVKMIVNVL-----------EPTQGILLDPACGSGGMFVQTGDF 226

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V    +       +  +GQE       +C+  + +  L    +     N     T   D 
Sbjct: 227 VE--HAGMLANNTMTFYGQEKVEYNAKLCLMNLAVHGLNGIVKSGDEAN-----TFYHDA 279

Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS------DGSMLFL 339
              +    Y ++NPPF     K + A          GR   GLP ++      +G+ L++
Sbjct: 280 HNLEGCCDYVMANPPFNVDKVKSESAQSA-------GRLPFGLPSVNKNKEIGNGNYLWI 332

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +    L       GRA  V++SS      +   + +IR  L++   +  +V++  + F+
Sbjct: 333 SYFYAYLNEQ----GRAGFVMASSA---TDSQGKDKDIREQLVKTGHVAVMVSVGNNFFY 385

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
             ++   LW     K EE R KV  I+A + +T +     +           I+ +Y   
Sbjct: 386 TKSLPCSLWFFDKGKREELRDKVLFIDARNYYTVVDRTLNEWSDWQLKNLNAIVWLYRGE 445

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRM------------------SFILDKTGLARLEAD 501
            +   + + +Y       + ++    +                   +   +  LA+ + +
Sbjct: 446 VDKYQALVKEYDRALVHHVTLMHANELLPAVHERRNFSEVVTVFEEYRKQQQELAKFDLE 505

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
              RK     Q+ W + L  + + I     A    ++
Sbjct: 506 KVVRKDKKKTQALWDEKLAVIDEAISTAKEAVWLTEK 542


>gi|291546500|emb|CBL19608.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 552

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 119/574 (20%), Positives = 222/574 (38%), Gaps = 64/574 (11%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPT 51
           M +   +    ++ N ++   + L        F     ++L    LR +    E  +E  
Sbjct: 1   MAKKKTTEKALNIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIENL 60

Query: 52  RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYIAS 106
           +  ++E+ L     NI    F     A  ++    E   ST+ ST        L++ +  
Sbjct: 61  KQTLKEQGLDPEDENIRAAFFDDATFADGTYNLPPEARWSTIISTPAPQLNVALDTALQR 120

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
             +    +   F   +  AR   A  + KI    + I          ++  +YE+ ++ F
Sbjct: 121 LEEEDPQLKGCFVKGTFTARNLAANDIKKIVDEVNKISHKTFGEEKDLIGRVYEYFLKEF 180

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
               ++   +F TP DVV L   ++   D            TLYDP CG+GG    +   
Sbjct: 181 AVNATKEEGEFYTPHDVVQLIATMIEPYDG-----------TLYDPCCGSGGMFIQSAEL 229

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V     +      +  +GQE EP T+ +    + +R +  +   +        S+ + DL
Sbjct: 230 VKSKQGNLN---GINVYGQEKEPATYRLAKMNLALRGISHNLGEEA------DSSFTHDL 280

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANK 345
             G  F+Y ++NPPF  K   + +           GR+     P  S+ +  +++H+ + 
Sbjct: 281 HKGLHFNYIMANPPFNLKGWYNDN-------LKNDGRWSDYQTPPESNANYAWILHILSH 333

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G A  +L++  L +        EIR+ L++ND IEAIV LP +LF  T+I+ 
Sbjct: 334 LKKTD---GVAGFLLANGALNDSDT----LEIRKELIQNDKIEAIVVLPRELFITTDISV 386

Query: 406 YLWILSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDI 455
            LWIL+  K            R  ++  ++      + ++ E KK+  ++ +Q  +  DI
Sbjct: 387 TLWILNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESKKKVRLDTEQIEKAADI 446

Query: 456 YVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLH 511
           Y + +  G      +     YR + +       + L  +          DI + K     
Sbjct: 447 YHTWQCEGTDGAAYEMPEL-YRSVCINEIESKGWALTPSKYIEFIDHDLDIDYEKEMVRI 505

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
           QS   +++K   +           ++ES    + 
Sbjct: 506 QSEMQEVMKQEKKSQQMRLTRIQMLQESFYQLKE 539


>gi|261415743|ref|YP_003249426.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372199|gb|ACX74944.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325604|gb|ADL24805.1| type I restriction-modification system, M subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 624

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 101/607 (16%), Positives = 198/607 (32%), Gaps = 77/607 (12%)

Query: 4   FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
              S   L   +W++A+ L          +   +L    LR      +   + + +   +
Sbjct: 2   DNKSLKKLEADLWESADLLRADSKLTSNQYCMPVLGLLFLRYAYGRFKKVEAELLKNRPS 61

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NL 100
            GG  + +E+   V+  + +   E     L     N  +                   N 
Sbjct: 62  RGGRVLPIEASDFVSKSALFLPKEAQFDYLVNLPANIASAKLKNVHGQPLNSLGEVVNNA 121

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
              + + S+  K +              K  LL ++ + F+   L  D V   VM  IYE
Sbjct: 122 MELVEAQSEKLKGVLPK------TYTDFKDNLLAELLRTFNNNAL--DDVGGDVMGRIYE 173

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + +F   ++     F TP+ +V +   +L                 L DP CG+GG  
Sbjct: 174 YFLSKFAKNIASDDGVFFTPKSLVKMIVNVL-----------EPSYGVLLDPACGSGGMF 222

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               + V    +       +  +GQE       +C+  M +  L    +     N     
Sbjct: 223 VQTGDFV--NAAGMASNETMTFYGQEKVEYNAQLCLMNMAVHGLTGVVKSGDEAN----- 275

Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS------D 333
           +   D      +  Y ++NPPF     K +            GR   GLP ++      +
Sbjct: 276 SFYHDAHNLTGQCDYVMANPPFNVDKVKAESCQSA-------GRLPFGLPAVNKDKEIGN 328

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G+ L++ +  + L       GRA  V+++S      + S + +IR  L+    ++ ++++
Sbjct: 329 GNYLWISYFYSYLNEK----GRAGFVMAASA---TDSQSKDKDIREKLVATGHVDCMISV 381

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             + F+  ++   LW     K +  + KV  I+A + +T +     +           I+
Sbjct: 382 GNNFFYTKSLPCTLWFFDKCKKKNIKDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIV 441

Query: 454 DIYVSRENGKFSRMLDYRTFG--YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +Y    +   S + +YRT    Y        L            ++E    +R+     
Sbjct: 442 WLYRGELDKYQSLLAEYRTTLLSYADETDDANLEKILRKTSKIAKQVELLKEYRETLRAE 501

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV---KASKSFIVAFIN--AFGR 566
               +D      ++     W     +     N AK       K         +       
Sbjct: 502 AKASVDAADKKSKKKTQEEWDTRLAEFDEILNVAKEADWLYEKFGDGKYKDILGLCKIAT 561

Query: 567 KDPRADP 573
           +   A+ 
Sbjct: 562 RAEIAEK 568


>gi|167750092|ref|ZP_02422219.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702]
 gi|167656965|gb|EDS01095.1| hypothetical protein EUBSIR_01060 [Eubacterium siraeum DSM 15702]
          Length = 621

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 92/571 (16%), Positives = 191/571 (33%), Gaps = 77/571 (13%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L   +W++A+ L          +   +L    LR      +   + + +   + GG  +
Sbjct: 6   KLEAELWESADLLRAGSKLTSNQYCMPVLGLIFLRYAYSRFKKVEAEILKDRPSRGGRVM 65

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NLESYIAS 106
            +E+    A  + +   E     L     N                      N    I  
Sbjct: 66  PVEASDFSAKSALFLPKEAQYEYLVNLPENIAAAGLINKAGHPMNSLGEVVNNAMQLIED 125

Query: 107 FSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            S+    +      DF+          LL ++ + F+   L  D V   ++  IYE+ + 
Sbjct: 126 QSEQLTGVLPKSYTDFTDE--------LLAELLRIFNNSAL--DDVGGDIIGRIYEYFLN 175

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F   ++     F TP+ +V +   ++                 L D  CG+GG    + 
Sbjct: 176 KFAKNIASDDGVFFTPKSLVKMIVNII-----------EPKQGVLLDCACGSGGMFVQSG 224

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + V    +       +  +GQE       +C+  M +  L    +     N     T   
Sbjct: 225 DFV--NAAGMNANSTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEAN-----TFYH 277

Query: 285 DLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS------DGSML 337
           D         Y ++NPPF     K +            GR   GLP ++      + + L
Sbjct: 278 DAHNLNGCCDYIMANPPFNVDKVKAESCESA-------GRLPFGLPSVNKNKEVGNANYL 330

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ +  + L       GRA  V++SS      +   + +IR  L+    ++ ++++  + 
Sbjct: 331 WISYFYSYLNEH----GRAGFVMASSA---TDSQGKDKDIREKLIGTGHVDVMISVGNNF 383

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+  ++   LW     K E  R KV  I+A + +T +     +           I+ +Y 
Sbjct: 384 FYTKSLPCSLWFFDKAKGEAIRDKVLFIDARNYYTVVDRTLNEWSEWQLKNLNAIVWLYR 443

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--SFW 515
              +   + + +Y  + +   +      +   + +     + + +   KLS L +     
Sbjct: 444 GETDKYTALLQEYHHYLHDEAEAAENDDLKEAVYQESFVDIVSALK-EKLSALRKTAKAE 502

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
           ++      ++     + +         N AK
Sbjct: 503 VEAAGKRDKKSVQQQYDDRIAYIENMLNVAK 533


>gi|269797185|ref|YP_003311085.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
 gi|269093814|gb|ACZ23805.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
          Length = 616

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 169/478 (35%), Gaps = 70/478 (14%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L N +W+ A+ L          +   +L    LR      +     + +      G  +
Sbjct: 6   KLENELWEAADALRAGSKLTSNQYCMPVLGLIFLRYAYSRFKLIEVEILKDRPMRNGRVM 65

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLG--STNTR-------------------NNLESYIAS 106
            +E+    A  + Y   E     L     + +                   NN  + I  
Sbjct: 66  PVEASDFKAKSALYLPIEAQYDYLLNLPEDIKGAALTSKDGQVMTSLGEVVNNAMALIEE 125

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            S     I    +++     L     L +I + F+   L  D V   ++  IYE+ + +F
Sbjct: 126 QSAQLTGILPK-NYTDFSDEL-----LAEILRIFNNSAL--DEVGGDIIGRIYEYFLNKF 177

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              ++     F TP+ +V +   +L                TL+DP CG+GG    + + 
Sbjct: 178 AKNIASDDGVFFTPKSLVKMIVNVL-----------EPTHGTLFDPACGSGGMFIQSGDF 226

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           V   G +      +  +GQE       +C+  M +  L    +        +G++   D 
Sbjct: 227 VNSHGLNANS--TMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGD-----EGNSFYNDA 279

Query: 287 FTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFL 339
              + R  Y ++NPPF     K +            GR   G+P      +I + + L++
Sbjct: 280 HQLEGRCDYIMANPPFNVDKVKSESTQAA-------GRLPFGMPGVNKNKEIGNANYLWI 332

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            +  + L       GRA  V++SS      +   +  IR  L++   ++ +V++  + F+
Sbjct: 333 SYFYSYLNDI----GRAGFVMASSA---TDSQGKDKNIRESLVKTGAVDVMVSVGNNFFY 385

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             ++   LW     K +    KV  I+A + +T +     +           I+ +Y 
Sbjct: 386 TKSLPCSLWFFDRAKPDAIEDKVLFIDARNYYTVVDRTLNEWTEWQLKNLNAIVWLYR 443


>gi|120436929|ref|YP_862615.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117579079|emb|CAL67548.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 526

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 85/479 (17%), Positives = 164/479 (34%), Gaps = 56/479 (11%)

Query: 6   GSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY---- 59
                L   +W  A+DL         ++   +L   LLR  +   E  +  +  K     
Sbjct: 4   EQLKDLEKQLWDAADDLRANSKLTAAEYKDPLLGLVLLRFAQNRYEEAKIYIENKLPVNP 63

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-----NNLESYIASFSDNAKAI 114
                     E F+          ++Y       ++       N     + +   +   I
Sbjct: 64  RTGKKRESTKEDFLGAGAIKLPEKAQYDYLANLPSDISMPEKVNEAMKLVETEYPDLAGI 123

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--E 172
                       +++A LL  + + F+   +        V   IYE  + +F  + +  +
Sbjct: 124 LPK-----NYQEMDEA-LLRSLVRTFNSDAV--KKASGDVFGRIYEFFLMKFSMQGAGAQ 175

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TP  +V+L    +                 ++DP CG+GG    + + + D   
Sbjct: 176 EGGEFFTPPSLVNLIVNFIQPDHG-----------IIHDPACGSGGMFVQSAHFIQDH-E 223

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KR 291
           +  +   +  +G E +     +    + I  +E          I   ++   D      +
Sbjct: 224 NRNVNEAITVYGTEYKSNNTKLAKMNLAIHGIEG--------KIINENSYYSDPHHLVGK 275

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
             + ++NPPF       K+    E K    G    G   IS+G+ L++ +  + L     
Sbjct: 276 CDFVMANPPFNMDKIDAKNKFLAEDKRLPFGPPLTGKGTISNGNYLWIQYFHSYLNKNGK 335

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            G   A            AG  E  IR  L+E   ++ IVA+  + F+  ++  +LW   
Sbjct: 336 AGFVMA-------SSATDAGHAEKRIREQLVETGDVDCIVAVGNNFFYTRSLPCHLWFFD 388

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QILDIYVSRENGKFSRM 467
             K +E R K+ +I+A +++   R         + DQ      I+ +Y   E  + S  
Sbjct: 389 KGKKKENRDKILMIDARNVY---RKVSSTVNDFSPDQMEGLTAIIQMYRG-EQPEVSED 443


>gi|226329604|ref|ZP_03805122.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198]
 gi|225202790|gb|EEG85144.1| hypothetical protein PROPEN_03513 [Proteus penneri ATCC 35198]
          Length = 396

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 149/412 (36%), Gaps = 56/412 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP--TRSAVREKYLAFGG 64
           +   LA  IW++A  +    +  ++   IL F   + L   L    T+  +  + +    
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTKEGMTAEDIKNLN 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNLESYIASFSDNAKAIFED 117
                      +   ++   +   ST          +N R+ L ++    S   K +FE 
Sbjct: 62  EEDTDTVQYVQSNLGYFIAYDNLFSTWVDPKFEFDESNVRDALSAFSRLISPTYKKLFEG 121

Query: 118 F--DFSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 + +++L ++       +  +      I          V+  IYE+LI +F +  
Sbjct: 122 IFTTLETGLSKLGESAGKRTKAISDLLHLIKSI-PMNANQGYDVLGYIYEYLIEKFAANA 180

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + A +F TP +V  L + ++                 +YDPT G+G  L +    V   
Sbjct: 181 GKKAGEFYTPHEVSVLMSNIVAHALKDKDNIE------IYDPTSGSGSLLINIGEAVQ-- 232

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             + K    +  + QEL+  T+ +    +++R +++   +      + G TL  D     
Sbjct: 233 -KYAKNKDSVTYYAQELKANTYNLTRMNLIMRGIKASNIKT-----RNGDTLEDDWPYFD 286

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                  +        +SNPP+ + WE    + +         RF  GL   +     FL
Sbjct: 287 ENDPQGSYETLYVDAVVSNPPYSQNWEPTDKSNDPR-----YSRF--GLAPKTKADFAFL 339

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +H    L+      G   IV     LF G     E +IR+ + +   + AI+
Sbjct: 340 LHDLYHLKP----NGIMTIVSPHGVLFRGGE---EGKIRKLMTKLSQLSAII 384


>gi|304373126|ref|YP_003856335.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis HUB-1]
 gi|304309317|gb|ADM21797.1| Type I restriction-modification system methyltransferase subunit
           [Mycoplasma hyorhinis HUB-1]
          Length = 931

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/519 (17%), Positives = 169/519 (32%), Gaps = 91/519 (17%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51
           T    +   LAN IW  A+ L G    +++   +L     + +    E T          
Sbjct: 11  TNKALTKQELANKIWTAADKLRGSIDASEYKNFLLELIFYKTISEKFEKTFIENFKDIQM 70

Query: 52  ----------------RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
                              +      +    +            ++    Y  S+    N
Sbjct: 71  LKCFTKVRNNFNNNTKDDNIVTLCSQYTEKELKDYKEELNGLVGYFIEEPYLFSSWIKNN 130

Query: 96  TRN----NLESYIASFSDNAKAIFEDFD---------FSSTIA------------RLEKA 130
             +     L   I +F+ N K   E  +         F                  LE+ 
Sbjct: 131 LEDFNVLTLSDSIKAFNQNQKEFEEKINPDKCSATPLFEGIFNSLSNDLNKLGNTTLEQT 190

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS-EVSEGAEDFMTPRDVVHLATA 189
             L  +      I +  +     V+  +YE LI +F S    +   +F TP +V  L + 
Sbjct: 191 KKLTSLIDIIKDIPVKQNNFD--VLGYVYEFLIAKFASSNTGKKGGEFYTPHEVSLLMSE 248

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           ++ +       E       +YD T G+G  L    +      ++         + QEL  
Sbjct: 249 IVANHLKNKNYE-----IKVYDSTSGSGSLLRSIGDMYKKITNNDDNSVK--YYAQELNS 301

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKK 304
            T  +    ++I  + +      +       TL  D          +    +SNPP+   
Sbjct: 302 STCKLTKMNLIINGIATKSICVQNA-----DTLKDDWPMKNDEETLKVDAVVSNPPYSMS 356

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  ++   +   +         G+   S     FL+H           GG  AIVL    
Sbjct: 357 WNAEEHKNDIRFEE-------YGIAPRSKADFAFLLHDLYH----VEDGGILAIVLPHGV 405

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK--TEERRGKV 422
           LF       E +IR  L+    I+AI+ LP  +F+ T I+T + IL   K   + +   +
Sbjct: 406 LFR---EGSEKQIREKLVRKANIKAIIGLPDKMFYGTEISTIIMILKKDKYYEKTKENNI 462

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             ++A++L+     +  K +       ++I+D  +++  
Sbjct: 463 LFVDASNLY----KQEGKMKKFLASHIKKIVDTVINKRE 497


>gi|34764861|ref|ZP_00145228.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27885799|gb|EAA23174.1| TYPE I RESTRICTION-MODIFICATION SYSTEM METHYLATION SUBUNIT
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 353

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 156/381 (40%), Gaps = 52/381 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  + S   +   ++ TP++V  L T + L     + K        +YDP
Sbjct: 12  DAFGDAYEYLMGMYASNAGKSGGEYYTPQEVSELLTKITLVGKTEVNK--------VYDP 63

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +       K        GQE+   T+ +C   M +  ++ D     
Sbjct: 64  ACGSGSLLLKFAKIL------GKNNVRNGFFGQEINITTYNLCRINMFLHDIDFDKF--- 114

Query: 273 SKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             +I  G TL++      + F   +SNPP+  KWE D   +          RF P   L 
Sbjct: 115 --DIAHGDTLTEPAHWDDEPFEAIVSNPPYSIKWEGDNSQI-----LINDSRFSPAGVLA 167

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
             S   + F+MH  + L       G AAIV     ++   A   E +IR++L++N+ I+ 
Sbjct: 168 PKSKADLAFIMHSLSWLAS----NGTAAIVCFPGVMYRSGA---EQKIRKYLIDNNYIDG 220

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I+ LP +LF+ T+IAT + +L   K      KV  I+A+  +  + N       + +   
Sbjct: 221 IIQLPDNLFYGTSIATCIMVLKKSK---IDNKVLFIDASKEFVKVTNS----NKMTEKHI 273

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF------ILDKTGLARLEADIT 503
             I++ +  REN ++   L      Y +I V     +S             +  +E +  
Sbjct: 274 DDIVEKFTKRENIEYISNL----IEYEKI-VEENYNLSVSTYVEKEDTSEKIDIVELNKE 328

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
            +++    +    +I K + +
Sbjct: 329 IQRIVAREEELRKEIDKIIAE 349


>gi|306843200|ref|ZP_07475813.1| type I restriction-modification system, M subunit [Brucella sp.
           BO2]
 gi|306286610|gb|EFM58183.1| type I restriction-modification system, M subunit [Brucella sp.
           BO2]
          Length = 741

 Score =  224 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 52/366 (14%)

Query: 119 DFSSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEG 173
           DF++   RL K       L K+   F  ++   +    D ++ + YE+L+R F +E  + 
Sbjct: 23  DFNNE-DRLGKGKAMVDTLTKLVGIFENLDFGKNRADGDDLLGDAYEYLMRHFATESGKS 81

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP +V  +   ++    D           T+YDPTCG+G  L            +
Sbjct: 82  KGQFYTPAEVSRILAKVIGINKD------TKRDATVYDPTCGSGSLL---------LKVN 126

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
            + P  L  +GQE E  T A+    M++   +SD        + Q  TLS   +  K   
Sbjct: 127 DEAPNGLSLYGQEKEQATVALARMNMILHGSDSDE-------LWQDDTLSAPHWRDKNGK 179

Query: 291 --RFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              F + ++NPPF  K W       + E +     RF  G P   +G   FL+H+   L+
Sbjct: 180 LRTFDFAVANPPFSLKSWSNGFTPSDDEFE-----RFEYGQPPEKNGDYAFLLHIIKSLK 234

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR A++L    LF G A   E++IRR L+    I+ I+ LP +LF+ T I   +
Sbjct: 235 ST----GRGAVILPHGVLFRGNA---EADIRRNLVRQGYIKGIIGLPANLFYGTGIPACI 287

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            ++    T      + +I+A+  +     +G K R +      +I+D++  +     +SR
Sbjct: 288 IVIDKS-TAGPERPIFMIDASKGFV---KDGNKNR-LRAQDIHKIVDVFNRQLVVDRYSR 342

Query: 467 MLDYRT 472
           ++ Y  
Sbjct: 343 LVPYDE 348


>gi|260767610|ref|ZP_05876546.1| N-6 DNA methylase [Vibrio furnissii CIP 102972]
 gi|260617510|gb|EEX42693.1| N-6 DNA methylase [Vibrio furnissii CIP 102972]
          Length = 713

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 173/474 (36%), Gaps = 64/474 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKY---- 59
            +  ++   +WK+A++L  + +    ++   ++    LR         +  +  +     
Sbjct: 5   ENIEAIEKRLWKSADNLRANSELASNEYFLPVMGLIFLRHAYSRYLAVKEEIIAELPSRG 64

Query: 60  ----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
                          +        F      + +   +      +ES I     N K   
Sbjct: 65  GKTRELTKEDFSQKSAIFLALEAQFDYLIALTDADKRAEAIIQAMES-IEKDYKNLKDQL 123

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
              ++++         +L  + +  +  EL        +   IYE+ +  F  + +    
Sbjct: 124 PKQEYNNI-----PNDVLGVLLRTLNPEEL--KQASGDIFGRIYEYFLTEFADQGAHDGG 176

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TP  +V L   +L                 ++DP CG+GG    + + +     + +
Sbjct: 177 EFFTPVSLVQLLVNVL-----------EPDHGKIFDPACGSGGMFVQSAHFMER---NAQ 222

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFH 293
            P  L  +G E    T  +    + +  LE +     S       T   D   G      
Sbjct: 223 NPQELTFYGHEKNRVTTRLAKMNLAVHGLEGNVEGGESA-----ITYYNDPHEGLFGTVD 277

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLE 347
           Y ++NPPF          V+ +    +  R   GLP      K+S+ + L++ +  + L 
Sbjct: 278 YVMANPPFNVD------EVDADKVKKDQARLPFGLPGVNKNKKVSNANYLWIQYFYSYL- 330

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              N  GRA  V+SS       AG  E+++R  L++   ++ +V +  + F+  ++   L
Sbjct: 331 ---NDTGRAGFVMSSQA---SSAGRDEAKVREQLVKTGDVDIMVDVRGNFFYTRSVPCQL 384

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ---ILDIYVS 458
           W L   K    + KV +++A +++   R   +K    + +Q++    I+ +Y +
Sbjct: 385 WFLDKNKPANLKNKVLMLDARNVY---RKVTRKIYDFSPEQQKNLTAIVWLYRN 435


>gi|309804936|ref|ZP_07698995.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LactinV 09V1-c]
 gi|308165749|gb|EFO67973.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners LactinV 09V1-c]
          Length = 535

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 111/564 (19%), Positives = 211/564 (37%), Gaps = 70/564 (12%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPT 51
           M +   +  +L   + ++   + L        F     ++L    LR +    E  +E  
Sbjct: 1   MAKKKTAEKTLNIDSILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEAL 60

Query: 52  RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI-- 104
           R  + E+ L    +NI    F     A  ++    E   ST+ +T        L++ +  
Sbjct: 61  RKTLIEQGLNPDDANIKAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSK 120

Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
             +     K  F    F++    L    +  KI    + I          ++  +YE+ +
Sbjct: 121 LEAEDPQLKGCFIKGTFTT--RNLAANDI-KKIVDEVNKISHKAFGKEKDLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F    ++   +F TP DVV L  A++                 LYDP CG+GG    +
Sbjct: 178 KEFAVNATKEEGEFYTPHDVVKLIAAMI-----------EPFEGRLYDPACGSGGMFIQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V     +      +  +GQE E  T+ +    + +R +  +            S+ +
Sbjct: 227 AELVKSKQGNLN---SINVYGQEKEAATYRLAKMNLALRGISHNLGDTN------DSSFT 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHL 342
            DL  G  F Y ++NPPF  K   D++            R+   G P  S+ +  +++H+
Sbjct: 278 HDLHKGLYFDYVMANPPFNLKGWYDEN-------LKNDARWADYGTPPESNANYAWILHI 330

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L+      G A  +L++  L +        EIR+ L++ND +EAI+ LP +LF  T+
Sbjct: 331 LSHLKPS---NGVAGFLLANGALNDSDT----LEIRKKLIQNDKVEAIIVLPRELFITTD 383

Query: 403 IATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQI 452
           I+  LWIL+  K            R  ++  ++      +      K++  ++ +Q ++ 
Sbjct: 384 ISVTLWILNQNKKGGKYHDRNLRNREHEILFMDLRTWTENAVKGENKKKVRLSAEQIQRA 443

Query: 453 LDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLS 508
            +IY + +  G            YR + +       + L  +          +I + K  
Sbjct: 444 ANIYHTWQSEGTDGNNYAVPEL-YRSVGMAEIESKDWSLTPSKYIEFIDHDLEIDYEKEM 502

Query: 509 PLHQSFWLDILKPMMQQIYPYGWA 532
              Q+   D+L    +       A
Sbjct: 503 ARIQAEMKDLLHEEKESQKMLEDA 526


>gi|325913562|ref|ZP_08175927.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
 gi|325477141|gb|EGC80288.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
          Length = 606

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 181/522 (34%), Gaps = 77/522 (14%)

Query: 10  SLANFIWKNAEDLWG--DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            L + +W++A+ L          +   +L    LR      +   + + +   + GG  +
Sbjct: 6   KLESELWESADLLRSGSKLTSNQYCMPVLGLIFLRYAYSRYKMVEAEILKGRPSRGGRVM 65

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLG--STNTRN-------------------NLESYIAS 106
            +E+    A  + Y   E     L     +  +                   N    I  
Sbjct: 66  PVEASDFAAKSALYLPKEAQYDYLLKLPEDISSASLVNKDGHSMNSLGEVVNNAMQLIED 125

Query: 107 FSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            S+    +      DFS  I        L ++ + F+   L  D +   ++  IYE+ + 
Sbjct: 126 QSEQLIGVLPKSYTDFSDEI--------LSELLRIFNNSAL--DEIDGDIIGRIYEYFLN 175

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F   ++     F TP+ +V +   ++                 L DP CG+GG    + 
Sbjct: 176 KFAKNIASDDGVFFTPKSLVKMIVNII-----------EPKSGVLLDPACGSGGMFIQSG 224

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + V    +       +  +GQE       +C+  M +  L    +     N     +   
Sbjct: 225 DFV--NAAGMNANRTMTFYGQEKVEYNAQLCLMNMAVHGLTGVIKSGDEAN-----SFYH 277

Query: 285 DLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSML 337
           D         Y ++NPPF     K +     +       R   G+P      ++ + + L
Sbjct: 278 DAHNLDGCCDYVMANPPFNVDKVKAEACESAK-------RLPFGMPGINKNKEVGNANYL 330

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ +  + L       GRA  V++SS      +   +  IR  L++   ++ ++++  + 
Sbjct: 331 WISYFYSYLNKK----GRAGFVMASSA---TDSQGKDKTIREKLVKTGHVDVMISVGKNF 383

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F++  +   LW    RK E  + KV  I+A + +T +     +           I+ +Y 
Sbjct: 384 FYKKTLPCSLWFFDKRKAEPIKDKVLFIDARNYYTVVDRALNEWTDWQLKNMNAIVWLYR 443

Query: 458 SRENGKFSRMLD--YRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             E  K+S +L+      G  +    +   +S  +      +
Sbjct: 444 G-EIDKYSNLLNEYRSALGSDKSFAEQVQELSGKVKALRSEK 484


>gi|290967797|ref|ZP_06559350.1| putative type I restriction-modification system, M subunit
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290782156|gb|EFD94731.1| putative type I restriction-modification system, M subunit
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 535

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 208/556 (37%), Gaps = 74/556 (13%)

Query: 10  SLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAVREKYLAF 62
           ++ N ++   + L        F     ++L    LR +    E  +E  R  + E+ L  
Sbjct: 12  NIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIEALRKTLIEQDLNP 71

Query: 63  GGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI---ASFSDNAKAI 114
              NI    F     A  ++    E   ST+ +T        L++ +          K  
Sbjct: 72  DDENIRAAFFEDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALTRLEEEDPQLKGC 131

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F    F++    L    +  K+    + I          ++  +YE+ ++ F    ++  
Sbjct: 132 FIKGTFTT--RNLAANDI-KKLVDEVNKISHKAFGEEKDLIGYVYEYFLKEFAVNATKEE 188

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP DVV L  A++                TLYDP CG+GG    +   V     + 
Sbjct: 189 GEFYTPHDVVKLMAAMI-----------EPFEGTLYDPACGSGGMFIQSAELVKATQGNL 237

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                +  +GQE E  T+ +    + +R +  +            S+ + DL  G  F+Y
Sbjct: 238 N---SINIYGQEKEAATYRLAKMNLALRGISHNLGGTN------DSSFTHDLHKGLYFNY 288

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF  K   D++            R+   G P  S+ +  +++H+ + L+      
Sbjct: 289 IMANPPFNLKGWYDEN-------LKNDARWADYGTPPESNANYAWILHILSHLKPS---N 338

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A  +L++  L +        EIR+ L++ND +EAI+ LP +LF  T+I+  LWIL+  
Sbjct: 339 GVAGFLLANGALNDSDT----LEIRKKLIQNDKVEAIIVLPRELFITTDISVTLWILNQN 394

Query: 414 KT---------EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRENGK 463
           K            R  ++  ++      +      K++  ++ +Q +    IY + +   
Sbjct: 395 KKGGKYHDRNLRNREHEILFMDLRTRTENAVKGENKKKVRLSAEQIQHAAAIYHTWQ--- 451

Query: 464 FSRMLDYRTFG----YRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWL 516
            S   D   +     YR + +       + L  +          DI + K     Q+   
Sbjct: 452 -SEATDGNNYAAPELYRSVGMAEMESKDWALTPSKYIEFIDHDLDIDYEKEMARIQAEMK 510

Query: 517 DILKPMMQQIYPYGWA 532
           D+L    +       A
Sbjct: 511 DLLHEEKESQKMLEDA 526


>gi|189347939|ref|YP_001944468.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
 gi|189342086|gb|ACD91489.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
          Length = 772

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 166/474 (35%), Gaps = 94/474 (19%)

Query: 2   TEFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EK 58
            + T +AA L   +W  A+ L      K  ++   +L    L   +      R+ +   K
Sbjct: 8   EKDTATAA-LEKRLWDAADQLRANSGLKAQEYSAPVLGLIFLLFADVRFAARRAELESAK 66

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                GS +D  +     G   Y + E     L +     N+   +    +  + I +  
Sbjct: 67  SSTRRGSRVDDPAAYHAEG-VLYLSPEARFGYLLNRPEAENIGVMVN---EAMRDIEKHN 122

Query: 119 D-FSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              +  + +   L  + LL ++ K  S I   P ++       IYE+ +  F     +G 
Sbjct: 123 QQLAGVLPKTYYLFDSPLLKQLLKKVSEI---PASMDYDAFGRIYEYFLGEFAMSEGQGG 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP  +V L T ++                 + DP CG+GG    +   VA   +  
Sbjct: 180 GEFYTPVSIVRLLTEVI-----------EPYHGRILDPACGSGGMFVSSARFVAQQKAKT 228

Query: 235 K----------------------------------------------IPPILVPHGQELE 248
           +                                                  L  HG E  
Sbjct: 229 RLTPPSSPALLPEVEGGEEYAPSSTRSLPKVEGGLSVGHDVTQYSGDPNRELSIHGIEKT 288

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEK 307
            ET  +C   + +  LE       + N     +   D       F + L+NPPF      
Sbjct: 289 DETGRLCRLNLAVHGLEGRIMHGGNVN-----SYYDDPHEATGNFDFVLANPPFNV---- 339

Query: 308 DKDAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
             +AV+KE     +G   RF  GLP+  + + L++    + L    N  GRA  V+++S 
Sbjct: 340 --NAVDKERLKDSVGPGRRFPFGLPRTDNANYLWIQLFYSAL----NERGRAGFVMANSA 393

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
                A S E EIRR L+E   ++ +VA+  ++F+   +   LW     K + R
Sbjct: 394 ---SDARSSEQEIRRQLVEIRAVDVMVAVGPNMFYTVTLPCTLWFFDKAKAKAR 444


>gi|90410147|ref|ZP_01218164.1| DNA methylase M, host modification [Photobacterium profundum 3TCK]
 gi|90329500|gb|EAS45757.1| DNA methylase M, host modification [Photobacterium profundum 3TCK]
          Length = 549

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 105/591 (17%), Positives = 195/591 (32%), Gaps = 93/591 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      E T            
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----EETGQE-----SELL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +  +      G   +      L  LG  +                +AIF++ +    
Sbjct: 51  PEGLRWKDLKTKIGREQHQFYRNMLVQLGDDSHAI------------VRAIFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   +               ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPAQLTELVSNMDSLGWFEGDKGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SH 233
            ++     L+           P     + DP  GT GFL +A  ++              
Sbjct: 154 SLISTIVKLM----------QPQPREVIQDPAAGTAGFLIEADRYIKSHTNDLDDLSEDD 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL PET  + +   L+  +E D  +  +  I+ G+TL  D     + +
Sbjct: 204 QDFQMQRAFVGLELVPETRRLALMNCLLHDIEGDQDKGGA--IRLGNTLGSDGEALPKSN 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     +                   +   S+  + F+ H+   LE     G
Sbjct: 262 VILTNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIVESLEP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  ++ LPT +F+   + T +      
Sbjct: 304 GRAAVVIPDNVLFEGGKG---ADIRRDLMDKCRLHTVLRLPTGIFYAAGVKTNVLFFQKG 360

Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             +  E+ +         D+ T++   G KRR + D      +  Y   +NG+  R    
Sbjct: 361 TVKNPEQDKKCTTETWVFDMRTNMNTFG-KRRPLTDKHFDAFIAAYGEDKNGQSPRSEGV 419

Query: 471 RTFG---YRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                  Y      V +  + +  +++    +   D    +        WL  L+     
Sbjct: 420 WDVMGAIYAEGETSVEQTSQKAHKVEEARFRKFSRDYIRDQKGDSLDISWLKDLEA---- 475

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP-RADPVT 575
                 +   + E          ++  + S I   + A G  D   A    
Sbjct: 476 -----TSTENLPEPEVLAGEAMAELTEAMSEIYQLMQALGANDEAEAQKQL 521


>gi|153811191|ref|ZP_01963859.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174]
 gi|149832689|gb|EDM87773.1| hypothetical protein RUMOBE_01583 [Ruminococcus obeum ATCC 29174]
          Length = 535

 Score =  221 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 197/481 (40%), Gaps = 57/481 (11%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAV 55
           + T  A ++ N ++   + L        F     ++L    LR +    E  +E  +  +
Sbjct: 5   KTTEKALNIDNILFNCRDYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGIENLKQTL 64

Query: 56  REKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYIASFSDN 110
           +E+ L     NI    F     A  ++    E   ST+ ST        L++ +    + 
Sbjct: 65  KEQGLDPEDENIRAAFFDDATFADGTYNLPPEARWSTIISTPAPQLNVALDTALQRLEEE 124

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +   F   +  AR   A  + KI    + I          ++  +YE+ ++ F    
Sbjct: 125 DPQLKGCFVKGTFTARNLAANDIKKIVDEVNKISHKTFGEEKDLIGRVYEYFLKEFAVNA 184

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           ++   +F TP DVV L   ++   D            TLYDP CG+GG    +   V   
Sbjct: 185 TKEEGEFYTPHDVVQLIATMIEPYDG-----------TLYDPCCGSGGMFIQSAELVKSK 233

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +      +  +GQE EP T+ +    + +R +  +   +        S+ + DL  G 
Sbjct: 234 QGNLN---GINVYGQEKEPATYRLAKMNLALRGISHNLGEEA------DSSFTHDLHKGL 284

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELP 349
            F+Y ++NPPF  K   + +           GR+     P  S+ +  +++H+ + L+  
Sbjct: 285 HFNYIMANPPFNLKGWYNDN-------LKNDGRWSDYQTPPESNANYAWILHILSHLKKT 337

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G A  +L++  L +        EIR+ L++ND IEAIV LP +LF  T+I+  LWI
Sbjct: 338 D---GVAGFLLANGALNDSDT----LEIRKELIQNDKIEAIVVLPRELFITTDISVTLWI 390

Query: 410 LSNRKT---------EERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQILDIYVSR 459
           L+  K            R  ++  ++      + ++ E KK+  ++ +Q  +  DIY + 
Sbjct: 391 LNQNKKGGKYHGRNLRNREHEILFMDLRQWTENAVKGESKKKVRLDTEQIEKAADIYHTW 450

Query: 460 E 460
           +
Sbjct: 451 Q 451


>gi|324115279|gb|EGC09243.1| N-6 DNA methylase [Escherichia fergusonii B253]
          Length = 529

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 176/485 (36%), Gaps = 91/485 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T      +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPVG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG+ N +              +A+F++ +    
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPKQLTELVSNMDSLDWYNGAYGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
                 + +     V + +     T++ + G KR    D+  +    +Y         R 
Sbjct: 361 TVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRT 416

Query: 461 NGKFS 465
            G++S
Sbjct: 417 EGEWS 421


>gi|253775030|ref|YP_003037861.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|301022251|ref|ZP_07186149.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
 gi|146398|gb|AAA23985.1| restriction-modification enzyme type I M subunit [Escherichia coli]
 gi|242379864|emb|CAQ34698.1| host modification; DNA methylase M, subunit of EcoKI
           restriction-modification system [Escherichia coli
           BL21(DE3)]
 gi|253326074|gb|ACT30676.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980326|gb|ACT45996.1| DNA methylase M [Escherichia coli BL21(DE3)]
 gi|299881301|gb|EFI89512.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
          Length = 529

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 176/485 (36%), Gaps = 91/485 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T      +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG+ N +              +A+F++ +    
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
                 + +     V + +     T++ + G KR    D+  +    +Y         R 
Sbjct: 361 TVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRS 416

Query: 461 NGKFS 465
            G++S
Sbjct: 417 EGEWS 421


>gi|117921401|ref|YP_870593.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117613733|gb|ABK49187.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 530

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 88/483 (18%), Positives = 164/483 (33%), Gaps = 68/483 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  ++   E T + + +K+       
Sbjct: 2   TQNDIVQKLWNLCDILRD--DGINYSDYVTELVLLLFIKMVHENTEAELLDKH--TLPEG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--------GSTNTRNNLESYIASFSDNAKAIFEDF 118
                    +G +  N  +  L  L           +    +E  + +       +    
Sbjct: 58  YRWTDLHTKSGINLLNDYKALLLALSTGKRVMLDPNDPEKTIEVQVHN-----DPLISAI 112

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              +   RL +   L +I K    I+          + ++YE L+ +  SE   GA  + 
Sbjct: 113 YADAQ-TRLREPRHLEQITKTLDQIDWFSAKRD--GLGDLYEGLLEKNASETKSGAGQYF 169

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231
           TPR +++     +           P     + DP  GT GFL  A  ++           
Sbjct: 170 TPRVLINSMVRCI----------KPQAGEYIQDPAAGTAGFLIAAHEYIKAQPEYDDLSL 219

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G EL P T  + +   L+  +E D        +  G+ L     + K 
Sbjct: 220 KQIDFQRYHAYVGVELVPNTRRLALMNCLLHGMEGDDDGV----VHLGNALGNVGQSLKP 275

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG     +      +                S+  + FL H+   L+    
Sbjct: 276 ADVILANPPFGTSKGGEASITRDDLTFD-----------TSNKQLAFLQHIYRNLKP--- 321

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF    G   ++IRR L++   +  I+ LPT +F+   + T +   +
Sbjct: 322 -GGRAAVVLPDNVLFEAGKG---TDIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 377

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVS-------RENG 462
               +++  + Q      ++    N     KR   +D+       +Y         R  G
Sbjct: 378 KGSAKDKHQQEQCTENVWVYDLRTNMPSFGKRTPFSDNHLAPFEQVYGEHAGGLSPRTEG 437

Query: 463 KFS 465
           ++S
Sbjct: 438 EYS 440


>gi|326314828|ref|YP_004232500.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371664|gb|ADX43933.1| N-6 DNA methylase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 483

 Score =  220 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 103/457 (22%), Positives = 165/457 (36%), Gaps = 66/457 (14%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNA-------KAIFEDFDFSSTI--ARLEKAGLLYKICK 138
            + L ++    +L   I     N        + +F D  F S       ++  +L     
Sbjct: 67  FAVLTNSGHMADLGKRIDQALANLEDRHPLLQGVFHDVSFDSAALGNPEQRQRILSDWLD 126

Query: 139 NFSGIEL-HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            F G+E  + D      ++   E LI    +       +F TP  V  L   +L      
Sbjct: 127 QFGGLEFDYRDENAAESVAFACETLISEVAAASGRRGAEFFTPPQVSRLIAQIL------ 180

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                P    ++ DP CG+G  L            +          GQE    T A+   
Sbjct: 181 ----QPEAGESVGDPCCGSGTLLLACSAFARARSGYEG----CQLFGQEKNGSTWALAKI 232

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVE 313
            ML+         +L+  ++ G TL           + F   +SNPPF  K    +    
Sbjct: 233 NMLVHG-------ELTAQLEWGDTLKDPRLVADGRLREFDVVVSNPPFNVKDWGQEA--- 282

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
               N   GR+  G+P        FL H+   L+    G GR A+V+S   LF   A   
Sbjct: 283 --AANDLYGRYRRGIPPRGTADYAFLSHMVETLKP---GRGRMAVVVSHGVLFRSGA--- 334

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E +IRR LLE  L++A++ALPT L   T +   L +L   K++    +V  I A+  +  
Sbjct: 335 ELQIRRQLLEEGLVDAVIALPTKLLPNTPLPIALLVLRKDKSDR---RVLFIKASRQFE- 390

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR-IKVLRPLRMSFILDK 492
               GK +  + D+   QI   YV+R + +          GY R + +   L+    L+ 
Sbjct: 391 ---HGKTQNRLRDEDLAQIEATYVARADVE----------GYARLVSLEDILQNDCNLNV 437

Query: 493 TGLARLEADITWRKLSPL--HQSFWLDILKPMMQQIY 527
                    +    L  L   +S     L+ +  +  
Sbjct: 438 ARYVEAVEPVCQVDLEALRAERSQLRAELEDLESRFA 474


>gi|255525760|ref|ZP_05392691.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|255510583|gb|EET86892.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 412

 Score =  220 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 94/458 (20%), Positives = 170/458 (37%), Gaps = 75/458 (16%)

Query: 109 DNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            + + IF D +   +    +  E+A  L  I K   GIE   D   D  +  IYE+LI +
Sbjct: 16  KDFRGIFNDINLGDSRLGSSTNERAKSLNNIVKLVDGIEYKGDDGKDI-LGEIYEYLIGQ 74

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F +   +   +F TP  V  +   ++    +            LYDPT G+G  L     
Sbjct: 75  FAASAGKKGGEFYTPHQVSKILAKVVTSGVE-----KSDEFFNLYDPTMGSGSLLLTVGQ 129

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +            +   GQEL   T+ +    +++  +  +     +       TL  D
Sbjct: 130 ELPKGTP-------MKYFGQELNTTTYNLARMNLMMHDVSYNNMVLNNA-----DTLESD 177

Query: 286 LFTG---------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDG 334
              G         + F   ++NPP+  KW+ D+  +       +  RF     L   S  
Sbjct: 178 WPDGPDGKGIDHPRSFDAVVANPPYSAKWDNDETKL-------KDPRFSDYGKLAPASKA 230

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++H    L    N  G  AIVL    LF G A   E +IR+ L+E + ++ ++ LP
Sbjct: 231 DYAFILHSIYHL----NNTGTMAIVLPHGVLFRGAA---EGKIRQTLIEKNYLDTVIGLP 283

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +LF+ T+I T + +    +  +    +  I+A++ +      GK +  +ND+   +I++
Sbjct: 284 ANLFYGTSIPTTILVFKKNRKTK---DILFIDASNDFEK----GKNQNNLNDENIDKIIN 336

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            +  R++      +           +       F L+         +     L  +++  
Sbjct: 337 TFKERKDVDKYAHVAS---------IEEIKENEFNLNIPRYVDTFEEEAPIDLEEVNKQL 387

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552
             D               E    E+  + + K L VK 
Sbjct: 388 EQD-------------NKEIAELEAEINEQLKILGVKI 412


>gi|72384681|gb|AAZ67632.1| DNA-methyltransferase putative [Haemophilus parasuis 29755]
          Length = 416

 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 129/401 (32%), Gaps = 71/401 (17%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS-- 65
              L   +WK A+ L       ++  ++L    L+ +  +    +  ++++Y        
Sbjct: 45  LNKLDADLWKAADKLRQQLDAANYKHIVLGLIFLKYVSDSFSAQQDIIKQRYTDPTSDFY 104

Query: 66  ----------------NIDLESFVKVAGYSFYNTSEYSLSTLG---STNTRNNL--ESYI 104
                               E         F+   +     +      N  + +  E   
Sbjct: 105 LDPTAYSESELADILNAELEERDNYAQDNVFWVPQQARWDEIKVVARANIGDKIWDEKTF 164

Query: 105 ASFSDNAKAIFEDF-----DFSSTIARLE----KAGLLYKICKNFSGIELHPDTVP---- 151
              ++     F+          + I R+     +  +L  +   FS       T+     
Sbjct: 165 KGIANLIDDAFDAIEQDNPKLKNVIQRISPYKVEESILLGLIDLFSDTNFTRPTLDGKQI 224

Query: 152 ----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 ++ ++YE+ + +F     +    + TP+ +V L   +L                
Sbjct: 225 SLAAKDILGHVYEYFLGQFALAEGKKGGQYFTPKSIVTLIIEML-----------EPYKG 273

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP  G+GGF       + +   +      +   GQE  P T  +    M IR +E D
Sbjct: 274 RIYDPAMGSGGFFVQTERFIREHQGNV---SEVSIFGQEFNPTTWKLAAMNMAIRGIEFD 330

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +  +       T S      K+  + ++NPPF  K               +  R+  G
Sbjct: 331 FGKGNA------DTFSNPQHRDKKMDFVMANPPFNMK-------DWWNESLAQDPRWQYG 377

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +P   + +  +L H+   L       GR A++L++  + + 
Sbjct: 378 IPPEGNANFAWLQHMIYHLSP----NGRMALLLANGSMSSN 414


>gi|317132803|ref|YP_004092117.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
 gi|315470782|gb|ADU27386.1| N-6 DNA methylase [Ethanoligenens harbinense YUAN-3]
          Length = 231

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 89/214 (41%), Positives = 121/214 (56%), Gaps = 7/214 (3%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA-- 61
            + + +  +NFIWK A+ L GDFK +++G VILPFT+L RL+  L PT+  V E +    
Sbjct: 1   MSINISEKSNFIWKIADILRGDFKQSEYGDVILPFTVLCRLDSVLAPTKERVMEIHRQGM 60

Query: 62  FGGSNIDLESFVKVA-GYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFEDF 118
           F      L  F  +  G  FYN SE++ + L     N  +NL  YI  FS+NA+ I E F
Sbjct: 61  FKTEYAKLAGFKSITGGLKFYNISEFTFAKLKDDAANIADNLTDYIKGFSENARMILESF 120

Query: 119 DFSSTIARLEKAGLLYKICKNF-SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           D  S IARL+KA LLY +   F   I+LHPD V +  M  I+E LIR+F    +E A + 
Sbjct: 121 DIYSQIARLDKANLLYLVVTRFVDDIDLHPDRVSNNEMGYIFEELIRKFSEMSNETAGEH 180

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            TPR+V+ L  A+L DPD       PG +  LY+
Sbjct: 181 FTPREVIRLMVAMLFDPDM-RLITEPGFMAKLYE 213


>gi|293393085|ref|ZP_06637400.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM
           4582]
 gi|291424231|gb|EFE97445.1| type I restriction enzyme StySPI M protein [Serratia odorifera DSM
           4582]
          Length = 529

 Score =  219 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 114/595 (19%), Positives = 208/595 (34%), Gaps = 105/595 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T     E+YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--EEYLPVG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG+   +              +A+F+  +    
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RNLLVHLGADEQKL------------VQAVFQSVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +   D        ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPKQLTELVSNMDSLDWYNGSDGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIVHLL----------KPQPREIVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 VVMTNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                 + +     V + +     T++ + G KR    +   +    +Y    +G   R 
Sbjct: 361 TVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGVDPHGLSPRP 416

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
               +F     +V          +   + + +A   WRK S        + ++       
Sbjct: 417 EGEWSFNAEEAEVADSE------ENQNIDQHQATSRWRKFS-------REWIRSAKSDSL 463

Query: 528 PYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP-----RADPVTDV 577
              W +   K+SI ++      V      +   + A G  D       AD V D 
Sbjct: 464 DISWLKD--KDSIDADNLPEPDV-LVAEAMTELVQAMGELDALMRELGADEVADA 515


>gi|254225987|ref|ZP_04919588.1| N-6 DNA Methylase family [Vibrio cholerae V51]
 gi|125621521|gb|EAZ49854.1| N-6 DNA Methylase family [Vibrio cholerae V51]
          Length = 552

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 169/474 (35%), Gaps = 80/474 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L + +WK  ++L        +   +  L     L+      + T            
Sbjct: 2   NNNDLVSKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----EDLL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +   K  G   +      L  LG  N                +AIF++ +    
Sbjct: 51  PKGYRWDDLKKKMGQEQHQFYRKLLVQLGDDNHAI------------VRAIFQNAN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHPDT---VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              + +   L ++  N   ++ + +           ++YE L+++  +E   GA  + TP
Sbjct: 95  -TTIREPKQLTELVSNMDSLDWYDNDGTGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------S 232
           R ++     L+           P     + DP  GT GFL +A  ++             
Sbjct: 154 RSLISTIVELI----------KPQPREIIQDPAAGTAGFLIEADKYIKAQTNDLDELPLD 203

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +        G EL PET  + +   L+  +E D        I+ G+TL     +  + 
Sbjct: 204 DQEFQRTKAFVGLELVPETRRLALMNCLLHDIEGDENEGA---IRLGNTLGSAGESLPKA 260

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +  L+NPPFG     +                   +    +  + F+ H+ + LE     
Sbjct: 261 NVILTNPPFGSAASTNITRTF--------------VHPTGNKQLCFIQHIYDALEP---- 302

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGRAA+V+  + LF G  G   +EIRR L++   +  I+ LPT +F+   + T +     
Sbjct: 303 GGRAAVVIPDNVLFEGGKG---TEIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFQK 359

Query: 413 ---RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                  + +G  + I   D+ T+I   G KRR + D      +  Y    NG+
Sbjct: 360 GTQENPMQDKGCTKEIWVFDMRTNINTFG-KRRPLTDKHFEAFIAAYGEDPNGQ 412


>gi|126667623|ref|ZP_01738592.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
 gi|126627892|gb|EAZ98520.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
          Length = 576

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 175/488 (35%), Gaps = 64/488 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
             +   +   +W   + L       ++   +    LL  ++   E T +   +K+     
Sbjct: 34  NMTNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGTLKKHP--LP 89

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                      +G +  N  +  L +L   +T  + +  +        AI     ++   
Sbjct: 90  EGCRWTDLNGKSGINLLNDYKRILLSL---STGRDSDGTLVHNDPLISAI-----YTDAQ 141

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL +   L ++ K    I+          + ++YE L+ +  +E   GA  + TPR ++
Sbjct: 142 TRLREPRHLEQMIKTLDQIDWFSAQKD--GLGDLYEGLLEKNANETKSGAGQYFTPRALI 199

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHHKI 236
           +   A +           P     + DP  GT GFL  A  HV D               
Sbjct: 200 NTMVACI----------KPQAGEMIQDPAAGTAGFLIAADQHVKDQTDQLFDLNARQQAF 249

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +E D        I  G+ L +     K+    L
Sbjct: 250 QRNDAFVGIELVPSTRRLALMNCLLHGMEGDEEGV----IHLGNALGQQGAGLKKADVIL 305

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     D      +              K S+  + FL H+   L+     GGRA
Sbjct: 306 ANPPFGTSKGGDASITRDDL-----------TYKTSNKQLAFLQHIYRNLKP----GGRA 350

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS----- 411
           A+VL  + LF    G   +E+RR L+    +  I+ LPT +F+   + T +   +     
Sbjct: 351 AVVLPDNVLFEAGVG---TEVRRDLMHKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSAT 407

Query: 412 -NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             ++ E     V + +   L T++ + G KR    +   +    +Y    NG+  R    
Sbjct: 408 DKQQEENSTDNVWIYD---LRTNMTSFG-KRTPFGEQHLKPFEAVYGDDSNGQSPRTEGE 463

Query: 471 RTFGYRRI 478
            +F   +I
Sbjct: 464 WSFHSDKI 471


>gi|255324373|ref|ZP_05365491.1| type I restriction-modification system, M subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255298560|gb|EET77859.1| type I restriction-modification system, M subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 374

 Score =  218 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 162/385 (42%), Gaps = 45/385 (11%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +E++  L  I      ++L   T  D  V  + YE+L+R + S       +  TP++V 
Sbjct: 3   TVERSKRLATIMMAVDKLDLGSFTDTDIDVFGDAYEYLLRMYASNAGRSGGEHFTPQEVS 62

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +  A+ +             IR  YDP  G+G  L      +               +G
Sbjct: 63  EILAAIAV--------NRRSTIRRAYDPCTGSGSLLFRFAKVLGIDNITDG------LYG 108

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGK 303
           QE+ P  HA+    M +  +  +       +I++G TL   L    + F   +SNPP+ +
Sbjct: 109 QEINPTNHALARMNMFLHGVPFEKF-----DIKRGDTLENPLHLEVQPFDAIVSNPPYSQ 163

Query: 304 KWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           KW       + +       RF P   L   S   + F MH+ + LE      G AAIV  
Sbjct: 164 KWPG-----KDDVTLINDPRFAPAGALAPKSYSDLAFTMHMLHHLEED----GVAAIVEF 214

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              L+ G A   E  IR++L++N+ ++A++ LP +LFF T+I+T + +L   +       
Sbjct: 215 PGILYRGGA---EKTIRQYLVDNNFVDAVIQLPPNLFFGTSISTVILVLKKNRE---TND 268

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKV 480
           V  ++A   +      G K   +N+D ++ ILD+Y + E  +  + ++       +   +
Sbjct: 269 VLFVDAAAHFV---KNGAK-NTLNEDNQQAILDLYFNHEAVEHQAELVSNDDIAAKDYTL 324

Query: 481 LRPLRMSFILDKTG--LARLEADIT 503
                +     +    +A+L ADI 
Sbjct: 325 SVNSYVEKEDTREKVDIAQLNADIA 349


>gi|254164266|ref|YP_003047376.1| DNA methylase M [Escherichia coli B str. REL606]
 gi|253976169|gb|ACT41840.1| DNA methylase M [Escherichia coli B str. REL606]
          Length = 529

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 175/485 (36%), Gaps = 91/485 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T      +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG+ N +              +A+F++ +    
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL                 + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KSQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
                 + +     V + +     T++ + G KR    D+  +    +Y         R 
Sbjct: 361 TVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRS 416

Query: 461 NGKFS 465
            G++S
Sbjct: 417 EGEWS 421


>gi|78484677|ref|YP_390602.1| N-6 DNA methylase [Thiomicrospira crunogena XCL-2]
 gi|78362963|gb|ABB40928.1| Type I restriction-modification system, M subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 709

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/582 (16%), Positives = 201/582 (34%), Gaps = 73/582 (12%)

Query: 6   GSAASLANFIWKNAEDLWGDFK--HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
               ++   +WK+A+ L    +    ++   ++    LR         +  +     + G
Sbjct: 5   QQIEAIEKRLWKSADGLRSGSELASNEYFMPVMGIIFLRHAYSRYLKVKEEIVTTLPSRG 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDN---AKAIFE 116
           G   DL         + +  ++     L     S +    +   + S   +    K    
Sbjct: 65  GKTRDLTLEDFSQKGAIFLNAKAQFDYLVSLTDSDDRAEAIIEAMESIEKDYDSLKGQLP 124

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             ++ S         +L  + +N +        +   +   IYE+ + +F  + +    +
Sbjct: 125 KDEYKSI-----PNEILGTLLRNLN--PDELKKMDGDIFGRIYEYFLTQFAGQGAHDGGE 177

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V +   ++                 ++DP CG+GG    + + V     H   
Sbjct: 178 FFTPISIVQMIVNVI-----------EPDHGKVFDPACGSGGMFVQSAHLVESM--HKNP 224

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---TLSKDLFTGKRFH 293
             +L  +G E    T  +    + +  LE          I  G+   T  KD   G    
Sbjct: 225 SQLLTFYGHEKNTTTTRLAKMNLQVHGLEG--------QIAGGNEAITYYKDPHEGLWGD 276

Query: 294 --YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANK 345
             + ++NPPF               K     R   GLP      K+S+G+ L+  +  + 
Sbjct: 277 TDFVMANPPFNVDE-------VDADKIKNDRRLVFGLPGVNKNGKVSNGNYLWASYFYSY 329

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    +  GRA  V+SS     G     E+E+R+ L++   ++A++ + ++ F+  ++  
Sbjct: 330 L----SDTGRAGFVMSSQASSAGGK---EAEVRKELVKTGHVDAMIDIRSNFFYTRSVPC 382

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-------VS 458
            LW  +  K +E   KV +++A +++   R   +K    + +Q + +  I+         
Sbjct: 383 QLWFYNKGKPQEHLDKVLMVDARNVF---RKVTRKIYDFSLEQLQNLTSIFWLYRGQTNR 439

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL-SPLHQSFWLD 517
                 S +           K  + L           A  EA   +  +    + +   +
Sbjct: 440 FIELVKSYIQQSLDLANALFKADQELPGLVEFTANMTAISEAVKPFYLIQDEPYVTQLNE 499

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
             + +   I      E+ VK +  + +A +  +    + I  
Sbjct: 500 FQEALTLFIKDTKQYEAAVKVANDNWDATSNDLSLFNALIEQ 541


>gi|255693566|ref|ZP_05417241.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260620632|gb|EEX43503.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 494

 Score =  217 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 186/532 (34%), Gaps = 82/532 (15%)

Query: 21  DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80
            L G      +   +L    L+             +         N      +     SF
Sbjct: 19  ILGGTLSVNQYKDYVLALLFLKSAS-------EYYKSNDSFQSDENKPFLRLLVSERSSF 71

Query: 81  YNTSEYSLSTLGS----TNTRNNLESYIASFSDNAK--AIFEDFDFSSTI--ARLEKAGL 132
               +Y    LGS          L     + S   +   I    +F S I     E+   
Sbjct: 72  ----DYLYKELGSLELGKLINVALYELEQANSRVIEGYEINRAINFESNILGDTDERLSK 127

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++   F  + L  D      +  +Y  L+  F  E  +   + +TP++V+ L   L+ 
Sbjct: 128 LRELLHFFQKLTLTDDAGKLIDIGALYNLLLYIFAEEAGKKINNVLTPKEVIGLVAELIG 187

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
           D  D           +L DP  G+G  L +    V   G++          GQE     +
Sbjct: 188 DNKDNN---------SLCDPVSGSGTLLVEVGKRVGIRGAN--------IFGQEANWNQY 230

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKD 308
           A+    +++   +             G +LS    T     KRF    S PPF  KW  +
Sbjct: 231 ALTKMNLMLNGFKDSTFF-------WGDSLSNPKLTDDGGLKRFDIVASIPPFADKWATE 283

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 E +    GRF  G+P  S  +  ++ H+   L+      GRA +V+ +  LF  
Sbjct: 284 ------EAEFDRYGRFQYGIPPRSQATWAYISHILASLKP----NGRAVVVVPAGVLFR- 332

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
              + ES+IR  ++E++L+EA++ LP +LF+   I+T + +      + +  +   ++A 
Sbjct: 333 ---TSESKIRHQIIEHNLLEAVIELPQNLFYGAAISTAILVFRK---DRKTTQTLFMDAR 386

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
             + S +        ++D    Q+L+ Y    +G+     +                 ++
Sbjct: 387 KGYISNKGI----YKLSDTMVEQLLNTYKGFLSGEQVWQENSC--------------PAY 428

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           I  +  +   + D    K            ++  +Q+I        FV E +
Sbjct: 429 IATQEEVRNNKYDWQTVKYVEEKIERVEVDVEATLQRIEKLEKRLEFVNEQL 480


>gi|309809689|ref|ZP_07703545.1| type I restriction-modification system, M subunit [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308170049|gb|EFO72086.1| type I restriction-modification system, M subunit [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 353

 Score =  217 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 152/381 (39%), Gaps = 42/381 (11%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    + YE+L+  + S   +   +F TP DV  L T L       + K       
Sbjct: 7   QDHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEVNK------- 59

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            +YDP CG+G  L              K       +GQE+   T+ +C   M +  +E D
Sbjct: 60  -VYDPACGSGSLLLK------SLKVLGKEGVRNGFYGQEINITTYNLCRINMFLHDVEFD 112

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                  ++    TL+       + F   +SNPP+  KW+ D + +          RF P
Sbjct: 113 KF-----DVACEDTLTSPQHWDDEPFELIVSNPPYSIKWDGDANPL-----LINDPRFAP 162

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L   S   + F+MH    L       G AAIV     ++ G A   E +IR++L++N
Sbjct: 163 AGVLAPKSKADLAFIMHSLAWLAS----NGTAAIVCFPGIMYRGGA---EKKIRQYLVDN 215

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + I+ I+ LP++LFF T IAT + ++   K + R      I+A++    + N       +
Sbjct: 216 NFIDCIIQLPSNLFFGTPIATCIMVIKKNKIDNRT---LFIDASNECVKVTN----NNKL 268

Query: 445 NDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
             +   +I+DI+  RE  +  + +  Y         +     +     +  +  ++ +  
Sbjct: 269 TPENIDRIVDIFTKREEIEHIAHLASYDEVKENDFNLSVSTYVEAEDTREKIDIVKLNAE 328

Query: 504 WRKLSPLHQSFWLDILKPMMQ 524
            +++    Q    +I K + +
Sbjct: 329 IKEIVAREQVLRDEIDKIIAE 349


>gi|304396444|ref|ZP_07378325.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp.
           aB]
 gi|304355953|gb|EFM20319.1| Site-specific DNA-methyltransferase (adenine-specific) [Pantoea sp.
           aB]
          Length = 529

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 169/482 (35%), Gaps = 85/482 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T          + 
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +      G          L  LG+ N +              +A+F++ +    
Sbjct: 51  PEGYRWDDLKARIGQDQLQFYRNLLVHLGADNQKL------------VQAVFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREIVQDPAAGTAGFLIEADRYVKSQTNDLDDLDNDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D  T    H
Sbjct: 204 QDFQIHRAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGETLPMAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 VVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIVETLLP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 414 ---KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RENGK 463
              K  + +     +   DL T++ + G KR    DD  +    ++         R  G+
Sbjct: 361 TVAKPTQDKNCTDDVWVYDLRTNMPSFG-KRTPFTDDHLQPFERVFGEDPHGLSPRSEGE 419

Query: 464 FS 465
           +S
Sbjct: 420 WS 421


>gi|295398847|ref|ZP_06808839.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
 gi|294972911|gb|EFG48746.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
          Length = 360

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 143/391 (36%), Gaps = 67/391 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           MT+ T +   L   +W +A+ L      +++   +L     + L           L+   
Sbjct: 1   MTKGTAT--ELYQALWTSADVLRSKMDASEYKNYLLGLIFYKYLSDTMLVHSSEMLDEKT 58

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTS-----EYSLSTLGS---------TNTRN 98
             + E    +  +  D E   +      Y  S     E + S L            + + 
Sbjct: 59  ENLDEALDMYREAYADDEFSEEFQSALVYEMSYRIKPELTFSALMEEINNHTFQREHLQQ 118

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDR 153
            L   I   S+  + +FED D +S   +L     ++   + ++ K    + L        
Sbjct: 119 GLRD-IEQSSNVFEDLFEDIDLNSK--KLGATPQKQNDTISQVMKALDNLNL--ANYDGD 173

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            + + YE+LI +F  +  + A +F TP  V  L T + L   +           T+YDPT
Sbjct: 174 ALGDAYEYLIGQFAEDSGKKAGEFYTPSQVSTLMTRIALANKED------KKGLTVYDPT 227

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +A  +             +   GQEL   T+ +    M +  ++ + +    
Sbjct: 228 MGSGSLLLNASKY-------SNEASTIRYFGQELNTSTYNLARMNMFLHNVDPENQI--- 277

Query: 274 KNIQQGSTLSKDLFTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG-LP 329
             ++ G TL  D    +   F   L NPP+  KW   K  ++         RF   G LP
Sbjct: 278 --LRNGDTLDADWPQDEPTNFDAVLMNPPYSAKWSAAKGFLD-------DPRFASYGVLP 328

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             S     FL+H    L+      G+ AIVL
Sbjct: 329 PKSKADFAFLLHGYFHLKND----GKMAIVL 355


>gi|16132170|ref|NP_418769.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655]
 gi|89111058|ref|AP_004838.1| DNA methylase M [Escherichia coli str. K-12 substr. W3110]
 gi|238903437|ref|YP_002929233.1| DNA methylase M [Escherichia coli BW2952]
 gi|331650830|ref|ZP_08351858.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia
           coli M718]
 gi|135200|sp|P08957|T1MK_ECOLI RecName: Full=Type I restriction enzyme EcoKI M protein;
           Short=M.EcoKI
 gi|322812245|pdb|2Y7C|B Chain B, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812246|pdb|2Y7C|C Chain C, Atomic Model Of The Ocr-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812250|pdb|2Y7H|B Chain B, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|322812251|pdb|2Y7H|C Chain C, Atomic Model Of The Dna-Bound Methylase Complex From The
           Type I Restriction-Modification Enzyme Ecoki (M2s1).
           Based On Fitting Into Em Map 1534.
 gi|41753|emb|CAA29792.1| unnamed protein product [Escherichia coli K-12]
 gi|537191|gb|AAA97246.1| CG Site No. 621; alternate gene names hs, hsm, hsp, rm [Escherichia
           coli str. K-12 substr. MG1655]
 gi|1790808|gb|AAC77305.1| DNA methyltransferase M [Escherichia coli str. K-12 substr. MG1655]
 gi|85677089|dbj|BAE78339.1| DNA methylase M [Escherichia coli str. K12 substr. W3110]
 gi|238860824|gb|ACR62822.1| DNA methylase M [Escherichia coli BW2952]
 gi|260450838|gb|ACX41260.1| N-6 DNA methylase [Escherichia coli DH1]
 gi|315138904|dbj|BAJ46063.1| DNA methylase M [Escherichia coli DH1]
 gi|331051284|gb|EGI23333.1| type I restriction enzyme EcoKI M protein (M.EcoKI) [Escherichia
           coli M718]
          Length = 529

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 168/488 (34%), Gaps = 97/488 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + E          Y    Y    L S   +  L+ Y   +    ++ K + +   F
Sbjct: 42  ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   +  +  N   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           + H   +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
           +        + +     V + +     T++ + G KR    D+  +    +Y        
Sbjct: 358 TKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLS 413

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 414 PRTEGEWS 421


>gi|145631985|ref|ZP_01787737.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144982369|gb|EDJ89949.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 338

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 132/312 (42%), Gaps = 41/312 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            + YE LI  + +   +   +F TP+ V  L   L L   D + K        +YDP  G
Sbjct: 1   GDAYEFLISNYAANAGKSGGEFFTPQCVSKLIARLALYGQDKVNK--------IYDPAAG 52

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L  A     +              GQE+   T+ +    M +  +  D       +
Sbjct: 53  SGSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----D 101

Query: 276 IQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKIS 332
           I  G+TL    F   + F   +SNPP+  KW    D            RF P   L   S
Sbjct: 102 IALGNTLMNPQFGDDKPFDAIVSNPPYSVKWVGSDDPT-----LINDERFAPAGVLAPKS 156

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                F++H  + L    +G GRAAIV      + G A   E +IR++L++N+ ++A++A
Sbjct: 157 KADFAFILHALSYL----SGKGRAAIVSFPGIFYRGGA---EQKIRQYLVDNNYVDAVIA 209

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LFF T+IA  + +LS  K   +    Q I+A+ L+           I+ ++   QI
Sbjct: 210 LAPNLFFGTSIAVNILVLSKHKPNTQT---QFIDASGLF----KSATNNNILEEEHIEQI 262

Query: 453 LDIYVSRENGKF 464
           L ++  +E+   
Sbjct: 263 LKLFADKEDVPH 274


>gi|86143513|ref|ZP_01061898.1| type I restriction-modification system specificity subunit
           [Leeuwenhoekiella blandensis MED217]
 gi|85829960|gb|EAQ48421.1| type I restriction-modification system specificity subunit
           [Leeuwenhoekiella blandensis MED217]
          Length = 513

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 97/491 (19%), Positives = 175/491 (35%), Gaps = 60/491 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           + +++ + IW  A  L  D     +G     I     L+  +           E      
Sbjct: 2   TDSTIISKIWNLASVLRDDGVG--YGDYLEQITYLLFLKMAD-----------ELNKPPY 48

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFS 121
              +       V G    +       TL         +  S +       K +     F+
Sbjct: 49  NKGLKFPKLKDVDGNEIQDGETCDWETLSGKRGAELESFYSQLLRSLSTEKGMLGQI-FT 107

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            +  +++    L K+       + +       +   IYE L+++   +   GA  + TPR
Sbjct: 108 KSQNKIQDPAKLLKVIDMIDREDWNMMGAD--IKGKIYEGLLQKNAEDTKSGAGQYFTPR 165

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIP 237
            ++    A +           P   +T+ DP CGTGGF   A + + +         +  
Sbjct: 166 SLIQAIVACV----------QPQPKKTIADPACGTGGFFLAAYDWIVEHHKLDKEEKQFL 215

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG E+   T  +C+  M +  +      D    I     L  D   GKRF Y L+
Sbjct: 216 KNNTFHGNEIVANTRRMCIMNMYLHNI---GEIDGEPFINPNDALIAD--DGKRFDYVLA 270

Query: 298 NPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           NPPFGKK        E E +  +    R        S+  + FL H+  +L+      G+
Sbjct: 271 NPPFGKKSSMTITNEEGEQEKEDLSYNRQDFWET-SSNKQLNFLQHIKTQLK----INGK 325

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF G AG    E+R+ LL+   +  I+ LPT +F+R  +   +      K 
Sbjct: 326 AAVVLPDNVLFEGGAG---EEVRKQLLKTADLHTILRLPTGIFYRPGVKANVLFF-KNKP 381

Query: 416 ---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470
              E    ++   +    + +  +   K++ +      + + +Y   +  N K +   + 
Sbjct: 382 ASKEAWTREIWFYD----YRTNVHHTLKKKPMLLSDLEEFIKLYNSSNINNRKETWSKEN 437

Query: 471 RTFGYRRIKVL 481
               +R+    
Sbjct: 438 EEGRWRKYTYE 448


>gi|332520739|ref|ZP_08397201.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix
           algicola 5H-3-7-4]
 gi|332044092|gb|EGI80287.1| Site-specific DNA-methyltransferase (adenine-specific) [Lacinutrix
           algicola 5H-3-7-4]
          Length = 467

 Score =  216 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 95/470 (20%), Positives = 166/470 (35%), Gaps = 77/470 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +   + N +W     L  D   +  +   +     L+      E T       Y   
Sbjct: 1   MALTTQEIVNKLWNLCNVLRDDGITYHQYLNELTFILFLKMA----EET------DYNDK 50

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  E+  +  G          L  LG+ +T             N + I     +++
Sbjct: 51  LPEGYRWENLKQKEGVELATFYRKLLLHLGTESTG------------NIQKI-----YNN 93

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +++   L KI K+   ++       D  +  +YE L+ +  SE   GA  + TPR 
Sbjct: 94  AQTSIQEPANLRKIIKHIDELDWFEAK--DEGLGEMYEGLLEKNASEKKSGAGQYFTPRP 151

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHK 235
           ++++   L+           P +   L DP CGT GF+  A +++             + 
Sbjct: 152 LINVMVRLM----------DPKVGERLNDPACGTYGFMIAAHHYILKHNDIYNLTEEQNN 201

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  +TH + +    +  +          NI  G +LS    + K     
Sbjct: 202 HLQTEQYSGCELVGDTHRLAMMNAFLHGMGG--------NIALGDSLSSYGESIKNMDLV 253

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K            K G+       +   S+  + FL  +   L     GG R
Sbjct: 254 LANPPFGTK------------KGGDRPTRTDLVYPTSNKQLNFLQGIYRSL--HTRGGAR 299

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G     +R+ L+E   +  I+ LPT +F+   + T +      KT
Sbjct: 300 AAVVLPDNVLFEDGDGQ---NVRKDLMEKCNLHTILRLPTGIFYAAGVKTNVLFFERGKT 356

Query: 416 EERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           ++   K V   +   + T++   G KR    +         Y +++  K 
Sbjct: 357 DKANTKNVWFYD---MRTNMPKFG-KRTPFTESYFADFEKAYTAKDRNKI 402


>gi|218708016|ref|YP_002415535.1| DNA methylase M [Escherichia coli UMN026]
 gi|293403007|ref|ZP_06647104.1| DNA methylase M [Escherichia coli FVEC1412]
 gi|298378534|ref|ZP_06988418.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           FVEC1302]
 gi|300899293|ref|ZP_07117559.1| N-6 DNA Methylase [Escherichia coli MS 198-1]
 gi|301646865|ref|ZP_07246711.1| N-6 DNA Methylase [Escherichia coli MS 146-1]
 gi|218435113|emb|CAR16069.1| DNA methylase M [Escherichia coli UMN026]
 gi|291429922|gb|EFF02936.1| DNA methylase M [Escherichia coli FVEC1412]
 gi|298280868|gb|EFI22369.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           FVEC1302]
 gi|300357072|gb|EFJ72942.1| N-6 DNA Methylase [Escherichia coli MS 198-1]
 gi|301074918|gb|EFK89724.1| N-6 DNA Methylase [Escherichia coli MS 146-1]
          Length = 529

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 168/488 (34%), Gaps = 97/488 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + E          Y    Y    L S   +  L+ Y   +    ++ K + +   F
Sbjct: 42  ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   +  +  N   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           + H   +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
           +        + +     V + +     T++ + G KR    D+  +    +Y        
Sbjct: 358 TKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLS 413

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 414 PRTEGEWS 421


>gi|153833416|ref|ZP_01986083.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01]
 gi|148870304|gb|EDL69234.1| type I restriction enzyme EcoKI M protein [Vibrio harveyi HY01]
          Length = 528

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/584 (17%), Positives = 190/584 (32%), Gaps = 88/584 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      E T            
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----EETGQE-----GDLL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             +          G   +      L  LG+       E  I       +AIF++ +    
Sbjct: 51  PEDFRWSKLKAKVGQDQHQFYRNMLVQLGAD------EHAI------VRAIFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   +E              ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPAQLTELVANMDSLEWFDGGQGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     ++           P     + DP  GT GFL +A  ++              
Sbjct: 154 SLISTIIKVM----------QPQPREIIQDPAAGTAGFLIEADKYIKANTNDLEDLSDDD 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +        G EL PET  + +   L+  +E D   D    I+ G+TL        +  
Sbjct: 204 QEFQMKKAFVGLELVPETRRLALMNCLLHDIEGD---DNEGAIRLGNTLGSAGENLPKAD 260

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     +                   +    +  + F+ H+ + LE     G
Sbjct: 261 VILTNPPFGSAASTNITRTF--------------VHPTGNKQLCFMQHIYDALEP----G 302

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +      
Sbjct: 303 GRAAVVIPDNVLFEGGKG---TDIRRDLMDKCNLHTILRLPTGIFYAAGVKTNVLFFQKG 359

Query: 414 KTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             E  +        T ++    N     KRR + +      ++ Y + +NG+        
Sbjct: 360 TPENPQQDKGCTVDTWVFDMRTNMNTFGKRRPLTEKHFDAFVNAYGADKNGQS------- 412

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
               R   V   L   F   +  +     +  WRK S  +          +         
Sbjct: 413 ---VREEGVYETLGSIFAEGEDSVTHTLENSRWRKFSREYIRDQKGDSLDISWLKDLEAT 469

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
           +   +            ++  + S I   + A G  D  A+   
Sbjct: 470 SAENLPAPELLAGEAMAELTEAMSEIYQLMQALG-ADDVAEGQK 512


>gi|24375749|ref|NP_719792.1| type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
 gi|24350692|gb|AAN57236.1|AE015859_5 type I restriction-modification system, M subunit [Shewanella
           oneidensis MR-1]
          Length = 537

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 105/583 (18%), Positives = 200/583 (34%), Gaps = 92/583 (15%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T S + +   +W   + L       ++   +    LL  ++   E T + +  K+     
Sbjct: 4   TSSNSDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGLLNKH--TLP 59

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +           G +  +  +  L TL     S     + +  I +   +A+        
Sbjct: 60  TGCRWTDLNDKDGLNLLDDYKRILLTLSTGKDSEGNTLHADPLILAIYADAQ-------- 111

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                RL +   L ++ K+   I+          + ++YE L+ +  +E   GA  + TP
Sbjct: 112 ----TRLREPRHLKQLIKSLDSIDWFSAQKD--GLGDLYEGLLEKNANETKSGAGQYFTP 165

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SH 233
           R ++     ++          +P     + DP  GT GFL  A   + +           
Sbjct: 166 RALIDSMVRVI----------NPQAGEVIQDPAAGTAGFLIAAHEFIKNADNYDDLTLKE 215

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +        G EL P T  + +   L+  +E D        +  G++L +   +  +  
Sbjct: 216 IEHLRNKAFIGVELVPSTRRLALMNCLLHGMEGDDEGV----VHLGNSLGQVGMSLPKAD 271

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     D      +                S+  + FL H+   L+     G
Sbjct: 272 IILANPPFGTSKGGDASITRDDL-----------TYPTSNKQLAFLQHIYRNLKP----G 316

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+VL  + LF    G   +++RR L+    +  I+ LPT +F+   + T +   +  
Sbjct: 317 GRAAVVLPDNVLFEAGVG---TDVRRDLMYKCNLHTILRLPTGIFYAAGVKTNVLFFTKG 373

Query: 414 KTEERRGKVQLINAT------DLWTSIRNEGKKRRIINDDQRRQILDIYV---------- 457
                  K+Q  N T      DL T++ N G KR    +        +Y           
Sbjct: 374 SEA---DKLQEENCTTNTWVYDLRTNMPNFG-KRTPFGEQHLTPFEAVYDPSSHSREGGN 429

Query: 458 ----SRENGKFSRMLDYRTFGYRRI---KVLRPLRMSFI-LDKTGLARLEA---DITWRK 506
               +R+ G++S   +        +      R  +  +    +  +   +    DI+W K
Sbjct: 430 PDLSARKEGEWSFNAEAVEIETTEVNQGIDERLAKSRWRVFSREFIRDTKGDSLDISWLK 489

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
            S    +  L   + +  +            E++  +    LK
Sbjct: 490 DSNSVDAADLGTPEELAGEAMTELKGALADLEALMKSLGAELK 532


>gi|218550388|ref|YP_002384179.1| DNA methylase M [Escherichia fergusonii ATCC 35469]
 gi|218357929|emb|CAQ90573.1| DNA methylase M [Escherichia fergusonii ATCC 35469]
          Length = 529

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/488 (18%), Positives = 168/488 (34%), Gaps = 97/488 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + E          Y    Y    L S   +  L+ Y   +    ++ K + +   F
Sbjct: 42  ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   +  +  N   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           + H   +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
           +        + +     V + +     T++ + G KR    D+  +    +Y        
Sbjct: 358 TKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFEHVYGEDPHGLS 413

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 414 PRTEGEWS 421


>gi|205359887|ref|ZP_02833022.2| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342263|gb|EDZ29027.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 533

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/490 (17%), Positives = 166/490 (33%), Gaps = 97/490 (19%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLA 61
           + +   L   +WK  ++L        +   +  L     L+                   
Sbjct: 4   SMNNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----------------- 44

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDF 118
              +  + +          Y    Y    L S   +  L+ Y   +     + K + +  
Sbjct: 45  -KETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRNLLVHLGADEKKLVQAV 93

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F +    + +   L ++  +   ++ +            ++YE L+++  +E   GA  
Sbjct: 94  -FQNVNTTITQPKQLTELVSSMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQ 152

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           + TPR ++     LL           P     + DP  GT GFL +A  +V         
Sbjct: 153 YFTPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTHDLDD 202

Query: 234 -----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          G EL P T  + +   L+  +E +     +  I+ G+TL  D   
Sbjct: 203 LDGDAQDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGEN 260

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +     +NPPFG     +                   +   S+  + F+ H+   L  
Sbjct: 261 LPQADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP 306

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T + 
Sbjct: 307 ----GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVL 359

Query: 409 ILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---- 458
             +        + +     V + +     T++ + G KR    +   +    +Y      
Sbjct: 360 FFTKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHG 415

Query: 459 ---RENGKFS 465
              R  G++S
Sbjct: 416 LSPRTEGEWS 425


>gi|251791238|ref|YP_003005959.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           zeae Ech1591]
 gi|247539859|gb|ACT08480.1| Site-specific DNA-methyltransferase (adenine-specific) [Dickeya
           zeae Ech1591]
          Length = 533

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 103/573 (17%), Positives = 194/573 (33%), Gaps = 72/573 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   +   +W   + L       ++   +    LL  ++   E T + + +++       
Sbjct: 2   SNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAELLDQH--ILPEG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +  N  +  L +L   +T    +  +       +AI     ++    R
Sbjct: 58  CRWADLNNKSGLTLLNDYKQILFSL---STGKTADGKLVHDDALIRAI-----YADAQTR 109

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L +   L ++ +    I+    +     + ++YE L+ +  SE   GA  + TPR +++ 
Sbjct: 110 LREPRHLAQMIRTLDQIDWF--SAQRDGLGDLYEGLLEKNASETKSGAGQYFTPRPLINS 167

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPP 238
               +           P     + DP  GT GFL  A   +               +   
Sbjct: 168 MVRCI----------KPQAGEVIQDPAAGTAGFLIAADQFIKQLTNSLYELDLKQQEFQR 217

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL P T  + +   L+  +E D        + QG+ L             L+N
Sbjct: 218 KKAFIGIELVPSTRRLALMNCLLHNMEGDDEGV----VHQGNALGMAGSRLPNADVILAN 273

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG     +      +              K S+  + FL H+   L+     GGRAA+
Sbjct: 274 PPFGTSKGGEASITRDDL-----------TFKTSNKQLAFLQHIYRNLKP----GGRAAV 318

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---RKT 415
           VL  + LF    G   ++IRR L+    +  I+ LPT +F+   + T +   S       
Sbjct: 319 VLPDNVLFEAGVG---TDIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFSKGTVNNP 375

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           ++     + +   DL T++ + G KR    +        +Y    +G+  R     +F +
Sbjct: 376 QQDENCTENVWVYDLRTNMPSFG-KRTPFGETHLAPFEAVYGDDPHGQSPRTEGEWSFTH 434

Query: 476 RRIKVLRPLRMSFILDKTGLARLE---------ADITWRK-----LSPLHQSFWLDILKP 521
                           +  +   E          DI+W K      +       +   + 
Sbjct: 435 TDDSAELSDDQRLETSRWRVFSREWIRDSKGDSLDISWLKDHNSIDAASLPEPGILAAEA 494

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           M +     G  ++ ++E    +EA   KV    
Sbjct: 495 MGELTQALGELDALLRELGADDEADAQKVLLQA 527


>gi|268609820|ref|ZP_06143547.1| type I restriction-modification system methyltransferase subunit
           like protein [Ruminococcus flavefaciens FD-1]
          Length = 452

 Score =  215 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 80/416 (19%), Positives = 164/416 (39%), Gaps = 56/416 (13%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----IFEDFDFSSTIARLEKAGLLYK 135
           FY       S +    + N++   I     + +     +      +           +  
Sbjct: 2   FYLKETARWSYIVKNASANDIAVIIDQAMADIEDSNPPLKGALPLNLFATLGADKSKIKD 61

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +  N + I        + ++  +YE+ ++ + +  ++   +F TP  VV L   ++    
Sbjct: 62  LIDNVNQIS-EERFQEEDLIGRVYEYFLQVYAASGTKEDGEFYTPACVVKLIAEMI---- 116

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
                        +YDP CG+GG    ++  V     +      +   GQE  P+T  +C
Sbjct: 117 -------EPYSGVVYDPCCGSGGMFVQSLKFVDRHNGN---RQKVSIIGQESNPDTWRLC 166

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              + IR +  +     +      ST + DL   K   Y ++NPPF             E
Sbjct: 167 KMNLAIRGIAHNLGDTNA------STFTNDLHKDKTVDYIMANPPFNL------KGWRAE 214

Query: 316 HKNGELGRFGPG----LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            +     RF       +P +++ +  +++H+ +KL++     G A  +L++  L    A 
Sbjct: 215 DELVNDSRFMRAGYSVMPPVANANYAWILHMLSKLDVNH---GVAGFLLANGALNASDA- 270

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE---------ERRGKV 422
             E  +R+ +LE D +EAI+ LP D+F+ T+I+  LWI++  K           +R  +V
Sbjct: 271 --EGTLRKEILERDRVEAIIVLPRDMFYTTDISVTLWIVNMNKKACTVNGRQLRDRTNEV 328

Query: 423 QLINATDLWTSI------RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
             ++     ++I      + + KK+ +  D+Q  +   IY + ++   +   +   
Sbjct: 329 LFMDLRSWDSNIEEIVIDKGKRKKKTVFTDEQIAEAKTIYNNWQSSDTTLYANIPE 384


>gi|120552975|ref|YP_957326.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
 gi|120322824|gb|ABM17139.1| N-6 DNA methylase [Marinobacter aquaeolei VT8]
          Length = 539

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 172/484 (35%), Gaps = 79/484 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  ++   E T +   +K+       
Sbjct: 2   TNNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMVHENTEAGTLQKHP--LPEG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLES--YIASFSDNAKAIFEDFDFSS 122
                  K  G +   T +  L  L  G     N +     I +   +A+          
Sbjct: 58  CRWTDLSKQDGQNLLETYKRMLLALSTGKDGQGNQIHDDPLITAIYSDAQ---------- 107

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              RL +   L ++      I+          + ++YE L+ +  +E   GA  + TPR 
Sbjct: 108 --TRLREPRHLRQMVATLDQIDWFSAQKD--GLGDLYEGLLEKNANETKSGAGQYFTPRA 163

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHK 235
           +++     L           P     + DP  GT GFL  A  ++        D  +  K
Sbjct: 164 LINTMVRCL----------KPQPGERIQDPAAGTAGFLIAAHEYIKGQTDDLYDLTTEQK 213

Query: 236 IPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                  + G EL P T  + +   L+  +E D        +  G+ L +     ++   
Sbjct: 214 AFQTTKAYVGIELVPGTRRLALMNCLLHGMEGDAEGV----VHLGNALGQTGAGLEKADV 269

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG     D      +              K S+  + FL H+   L+     GG
Sbjct: 270 ILANPPFGTSKGGDASITRDDL-----------TYKTSNKQLAFLQHIYRNLKP----GG 314

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G   +++RR L+    +  I+ LPT +F+   + T +   +   
Sbjct: 315 RAAVVLPDNVLFEAGVG---TDVRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGS 371

Query: 415 TEERRGKVQLINAT------DLWTSIRNEGKKRRIINDDQRRQILDIYVS-------REN 461
                 K Q  + T      DL T++ + G KR    D   +   D+Y         R+ 
Sbjct: 372 AA---DKYQEEHCTEHVWVYDLRTNMPSFG-KRTPFGDQHLKPFEDVYGDSPNGDSERKE 427

Query: 462 GKFS 465
           G++S
Sbjct: 428 GEYS 431


>gi|146281028|ref|YP_001171181.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145569233|gb|ABP78339.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 515

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/569 (19%), Positives = 190/569 (33%), Gaps = 78/569 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + + +   +W   + L       ++   +    LL  ++   E  ++   + +       
Sbjct: 2   TNSDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMEYEQVQNN--DSFAHKLPEG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +        L  L       N +  IA+   +A+             R
Sbjct: 58  ARWPDLAGKSGLNLLGHYRQMLLDL-----GKNSDPLIAAIYADAQ------------TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L ++ K+  GI+          + ++YE L+ +  SE   GA  + TPR ++  
Sbjct: 101 LKEPRHLEQLIKSLDGIDWFSARQD--GLGDLYEGLLEKNASETKSGAGQYFTPRPLIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--------PP 238
               L           P    T+ DP  GT GFL  A  ++      H            
Sbjct: 159 IINCL----------KPQPGETIQDPAAGTAGFLIAADAYIKRHTDDHYDLDAKAQAFQR 208

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL P T  + +   L+  +E D        +  G+ L +      +    LSN
Sbjct: 209 NRAFVGVELVPGTRRLALMNTLLHSMEGDEEGV----VHLGNALGQTGANLPKVDVILSN 264

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG              K G          K S+  + FL H+   L+     GGRAA+
Sbjct: 265 PPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRAAV 308

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---RKT 415
           VL  + LF    G   +++RR LL+   +  I+ LPT +F+   + T +           
Sbjct: 309 VLPDNVLFEAGVG---TDVRRDLLDKCNLHTILRLPTGIFYAQGVKTNVLFFQKGTQDNP 365

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
            + +G  Q +   DL +++ + G KR        +   D Y    N   S   +    G 
Sbjct: 366 RQEQGCTQRVWIYDLRSNMPSFG-KRTPFGAQHLKPFEDAYGEDANS-NSSRAENVE-GI 422

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
             +   R     FI  +     L  DI+W K +    +  L   + +  +      AE  
Sbjct: 423 GELSRFRVFTRDFI--RERGDSL--DISWLKDADSLDAADLPAPEVLAGEAM----AELT 474

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAF 564
                     K L      +     +   
Sbjct: 475 EALHELEELMKALGAGDEVAAQKQLMAEV 503


>gi|320013189|gb|ADW08037.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 461

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 113/520 (21%), Positives = 189/520 (36%), Gaps = 82/520 (15%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-SFVKVAGY 78
           + L G     D  +++L    LR +                A G S    +   +   G 
Sbjct: 15  DKLRGPLDIQDAQQLLLAVIFLRCVSDI------------PAGGASGDRPQWRQLAELGS 62

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           S     E + +            SY+      +++I +          L    LL ++  
Sbjct: 63  SLAGDHELTWA--LKQALDAWTSSYLDGGRPMSESIPDH---------LVAGPLLREVLG 111

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                +          +  +YE  + RF    ++   ++ TPR +V L   +L       
Sbjct: 112 LVDRAD---------RLVELYEECLERFS--NNKKGGNYFTPRHLVRLLVEML------- 153

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
              +P     ++DP CG+GGFL ++  +V + G        +   G+++ P    V    
Sbjct: 154 ---APRQGEQVFDPACGSGGFLVESARYVQEHG---GSSAAVGLVGRDINPRARQVAWMN 207

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +  R LE+D         +  ++L  D      F     NPPF  K  +D          
Sbjct: 208 LTARGLEADLGS------RPVNSLWADDTPAGAFDVVFVNPPFNLKLARD--------DL 253

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G P  S+ +  ++ H+ +KL       GRAA++L     F   A +G   IR
Sbjct: 254 RYDSRWRYGEPPRSNANFAWIQHVVSKLTTR----GRAAMLLPDGATFTSGAAAG---IR 306

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           R L+ +DL+ A+VALP  LF  T+I+   WI S  K  ERRG+V  ++A      +   G
Sbjct: 307 RGLVADDLVSAVVALPAGLFPHTSISASAWIFSREKPAERRGQVLFVDARKQGNLV---G 363

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           + RR +++     I D Y S     ++     R    R   V       F L        
Sbjct: 364 RGRRTLSEGAIESIADTYRSW----YAESYQDRPGWCRSATVEEIAAQEFNLQAVRYVGA 419

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            A+      +P  QS    + +   +    +  A     E
Sbjct: 420 PAE------APAPQSAEQRVAELTRELYGHFADAARLETE 453


>gi|167991323|ref|ZP_02572422.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205330316|gb|EDZ17080.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261249610|emb|CBG27480.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267996883|gb|ACY91768.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301161008|emb|CBW20545.1| type I restriction enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|323132867|gb|ADX20297.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332991334|gb|AEF10317.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 529

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 101/588 (17%), Positives = 196/588 (33%), Gaps = 103/588 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T          + 
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +      G          L  LGS      L   +               F + 
Sbjct: 51  PEGYRWDDLKSRIGQDQMQFYRNLLVQLGSD--EKKLVQAV---------------FHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              +E+   L ++      ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTIEQPKQLTELVSYMDALDWYNGNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
                 + +     V + +     T++ + G KR    +   +    +Y         RE
Sbjct: 361 TVTNPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRE 416

Query: 461 NGKFS---RMLDYRTFGYRRIKVLRPLRMSFI-LDKTGLARLEA---DITWRKLSPLHQS 513
            G++S      +       +    R     +    +  +   ++   DI+W K      +
Sbjct: 417 EGEWSFNAEESEVADSEENKNTDQRQATSRWRKFSREWIRSAKSDSLDISWLKDKDSIDA 476

Query: 514 FWL-----DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
             L        + M + +   G  ++ ++E    +EA   +   +++F
Sbjct: 477 DSLPEPDVLAAEAMGELVQALGELDALMRELGAGDEADAQRQLLNEAF 524


>gi|261820962|ref|YP_003259068.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium wasabiae WPP163]
 gi|261604975|gb|ACX87461.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Pectobacterium wasabiae WPP163]
          Length = 529

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 168/485 (34%), Gaps = 91/485 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T      +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPVG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL++ +      FY      L  LG      NL   I               F + 
Sbjct: 54  YRWDDLKARIGQDQLQFY---RKLLVELGQD--ERNLVQAI---------------FHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              +E+   L ++      ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTIEQPKQLTELVSYMDALDWYNGSKGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKLQTNDLEDLDTDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D       H
Sbjct: 204 QDFQIRRAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPLAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------IHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L+    +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGRG---TDIRRDLMNKCRLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
                 + +     V + +     T++ + G KR    D   +    ++         R 
Sbjct: 361 AVSNPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFGDQHLQPFEQVFGDDPHGLSPRS 416

Query: 461 NGKFS 465
            G++S
Sbjct: 417 EGEWS 421


>gi|302336438|ref|YP_003801645.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella
           uli DSM 7084]
 gi|301320278|gb|ADK68765.1| Site-specific DNA-methyltransferase (adenine-specific) [Olsenella
           uli DSM 7084]
          Length = 494

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/557 (18%), Positives = 206/557 (36%), Gaps = 81/557 (14%)

Query: 6   GSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            S +++   +W  A  L      ++D+ + +     L+  +   +P       K      
Sbjct: 2   SSQSTINQKVWSMATVLMNDGVSNSDYLEQLTYLLFLKMADEYSKPPY-----KRDMRIP 56

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            +   ++     G   +   EY L TLG T                 + I     +S   
Sbjct: 57  GDCTWDTLKSKRGDELFRHYEYVLKTLGETG-------------GTLQQI-----YSGAQ 98

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++    +L ++       +    ++   V  +IYE L+++   +   GA  + TPR ++
Sbjct: 99  NKISNPAILSRVITMIDAEKW--SSMSSDVKGDIYEGLLQKVAEDTKSGAGQYFTPRALI 156

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPI 239
                 +           P   +T+ DP CG+GGFL  A +++ D          +    
Sbjct: 157 SAMVDCV----------QPQPGKTVVDPCCGSGGFLLAAKDYIEDSEHYTLDRDQRHFLR 206

Query: 240 L-VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G E+ P T+ +C+  + +  +      +    I +  +L  D   G R+ Y L+N
Sbjct: 207 YSTFAGWEIVPSTYKLCLMNLFLHNISD---FNGEPPIYRNDSLLAD--PGTRYDYVLTN 261

Query: 299 PPFGKKWEK---DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PPFGKK      + + +++E +     R    +   S+  + F+ H+   L       G 
Sbjct: 262 PPFGKKSSYSFTNDEGLQEEEEGTYNRRDFWAV--TSNKQLNFVQHIHTILRQD----GH 315

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+V+  + LF G A  GE+ +RR LLE   +  I+ LPT +F+   +   +    NR  
Sbjct: 316 AAVVVPDNVLFEGGA--GET-VRRKLLETTNLHTILRLPTGIFYAQGVKANVIFFDNRPA 372

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRML 468
             + +  +V + +    + +  +   K+R +  +  +  +D Y       RE   +S   
Sbjct: 373 SPDWQTREVWIYD----YRTGVHHTLKQRPMTREHLQDFVDCYKPAAIGDREET-YSEEN 427

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                G  R       R +                 +    + +    D+L  + ++   
Sbjct: 428 PN---GRWR-------RFTLQEILDRDKASLDITWIKTGDDISEVQLSDLLAEIREKSDS 477

Query: 529 YGWAESFVKESIKSNEA 545
              A S ++E +   E 
Sbjct: 478 IASAVSRLEELLGDIEE 494


>gi|257083311|ref|ZP_05577672.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein
           [Enterococcus faecalis Fly1]
 gi|256991341|gb|EEU78643.1| LOW QUALITY PROTEIN: type I restriction enzyme M protein
           [Enterococcus faecalis Fly1]
          Length = 454

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 163/428 (38%), Gaps = 51/428 (11%)

Query: 110 NAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           + + IF+   F S         +A ++  + +  S  E       D  +S+IYE+L+ +F
Sbjct: 45  DFEGIFDGMRFDSADLGANAQARASVMISMIELLSSPEFDLSG-SDDTVSDIYEYLVAQF 103

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            + ++     + TP+++ ++   +L    +           ++YDPT G+G  L    ++
Sbjct: 104 ATVLASDMGQYYTPKEISNVMARILTSGREEE------ESFSIYDPTVGSGSLLLTTASY 157

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +      I       GQE +   + +    +++  +E +        I    TL  D 
Sbjct: 158 MKNSHKRGMIK----YFGQEKDATPYRLSRMNLMMHGVEYNDIS-----INHADTLESDW 208

Query: 287 FTG--------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSML 337
             G        + F   ++NPP+   W              +  R+   G+   +     
Sbjct: 209 PDGVVDGKDNPRMFDAVMANPPYSAHW--------NNKDREDDPRWREYGIAPKTKADYA 260

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H    L       GR AI+L    LF G A   E  IR+ L++   IE ++  P  L
Sbjct: 261 FLLHCLYHL----EDNGRMAIILPHGVLFRGAA---EGRIRKALIDKHQIETVIGFPDKL 313

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F  T+I   + IL   +T      +  ++A+  +  ++    K+  +  +   +I+D  V
Sbjct: 314 FLNTSIPVCVLILRKNRTAS---DILFVDASREFEKLK----KQNHLRPEDVDKIVDTVV 366

Query: 458 SRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            R+  + +S +            +  P  +    ++  +  +  +   +  +   +    
Sbjct: 367 QRKEIEKYSHLATLDEIKENDYNLNIPRYVDTYEEEPPVDLVALNNDIKNTNEEIKKVEA 426

Query: 517 DILKPMMQ 524
           ++L  +  
Sbjct: 427 ELLAMLDD 434


>gi|16767769|ref|NP_463384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197262701|ref|ZP_03162775.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|730886|sp|P40813|T1M_SALTY RecName: Full=Type I restriction enzyme StySJI M protein;
           Short=M.StySJI
 gi|154130|gb|AAA19429.1| restriction-modification enzyme type I M subunit [Salmonella
           enterica]
 gi|16423092|gb|AAL23343.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197240956|gb|EDY23576.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|312915622|dbj|BAJ39596.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321222501|gb|EFX47573.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 529

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 163/485 (33%), Gaps = 91/485 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T          + 
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +      G          L  LGS      L   +               F + 
Sbjct: 51  PEGYRWDDLKSRIGQDQMQFYRNLLVQLGSD--EKKLVQAV---------------FHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              +E+   L ++      ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTIEQPKQLTELVSYMDALDWYNGNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
                 + +     V + +     T++ + G KR    +   +    +Y         RE
Sbjct: 361 TVTNPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRE 416

Query: 461 NGKFS 465
            G++S
Sbjct: 417 EGEWS 421


>gi|291543145|emb|CBL16255.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus bromii L2-63]
          Length = 562

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/523 (21%), Positives = 193/523 (36%), Gaps = 82/523 (15%)

Query: 1   MTEFTGSAASLA--NFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRLECALEPT---- 51
           M +      SL   N ++     L        F     ++L    LR +    E      
Sbjct: 1   MAKKKTDEKSLNIDNILFNCRNYLRAARNSGSFFEKRDMMLTLVFLRFIGEKYEDGVKAL 60

Query: 52  RSAVREKYLAFGGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI-- 104
           R  + EK L     NI    F     A  ++    E   ST+ +T        L++ +  
Sbjct: 61  RQTLIEKGLDPDDENIKAAFFDDATFADGTYNLPIESRWSTIINTPAPKLNVALDTALIR 120

Query: 105 -ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                   K  F +  F++    L    +  KI    + I          ++  +YE+ +
Sbjct: 121 LEEEDPQLKGCFINGTFTT--RNLAPNDI-KKIVDEVNKISHKEFGKDRDLIGYVYEYFL 177

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F    ++   +F TP DVV L   ++                TLYDP CG+GG    +
Sbjct: 178 KEFAVNATKEEGEFYTPHDVVQLIATMI-----------EPYNGTLYDPCCGSGGMFVQS 226

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V     +      +  +GQE EP T+ +    + +R +  +         +  S+ +
Sbjct: 227 AALVKSKQGNLN---SINVYGQEKEPATYRLAKMNLALRGISHNLGS------EADSSFT 277

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHL 342
            DL  G RF+Y ++NPPF  K   + +            R+     P  S+ +  +++H+
Sbjct: 278 HDLHEGLRFNYIMANPPFNLKGWYNDN-------LKNDPRWADYATPPESNANYAWILHI 330

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + L+      G A  +L++  L +        +IR+ L+END +EAIV LP +LF  T+
Sbjct: 331 LSHLKAD----GVAGFLLANGALNDSDT----LDIRQKLIENDRVEAIVVLPRELFITTD 382

Query: 403 IATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKRRII--------- 444
           I+  LWIL+  K            R  ++  ++      +      K+++          
Sbjct: 383 ISVTLWILNRNKKGGNYHGRNLRNREHEILFMDLRQWKENPVKHENKKKVFLSSKDSKNT 442

Query: 445 ------NDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKV 480
                    Q  +  +IY + +  G  S         YR +KV
Sbjct: 443 ENITINLAGQIEKAAEIYHTWQNEGTVSEKYAVPEL-YRSVKV 484


>gi|320088960|emb|CBY98716.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 529

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 165/488 (33%), Gaps = 97/488 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + +          Y    Y    L S   +  L+ Y   +     + K + +   F
Sbjct: 42  ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRNLLVHLGADEKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   L ++  +   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  QNVNTTITQPKQLTELVSSMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V           
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTHDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDAQDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +     +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
           +        + +     V + +     T++ + G KR    +   +    +Y        
Sbjct: 358 TKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 414 PRTEGEWS 421


>gi|254430934|ref|ZP_05044637.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001]
 gi|197625387|gb|EDY37946.1| type I restriction enzyme StySPI M protein [Cyanobium sp. PCC 7001]
          Length = 487

 Score =  214 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 161/470 (34%), Gaps = 89/470 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   +  +   +     L+                      +
Sbjct: 5   TTGDIVAKLWNLCNVLKDDGVTYHQYVSELTYLLFLKM--------------AKETGTEA 50

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIF 115
            I  E               +    L +      LE Y           +  S   + I 
Sbjct: 51  GIPEE---------------WRWDELETRQGLKQLEHYKLLLLELGSSSSGSSALVQEI- 94

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               F++  + + K   L K+ +    ++ +        + ++YE L+++   E   GA 
Sbjct: 95  ----FANASSFIRKPVTLNKLVEEIDKLDWYSARQE--GLGDLYEGLLQKNAEEKKSGAG 148

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--- 232
            + TPR ++    A++           P +   + DP  GTGGFL  A   + +      
Sbjct: 149 QYFTPRPLIDAMVAVM----------QPQLGDVIQDPAAGTGGFLIAAQRWIREHQDISE 198

Query: 233 ----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +       +G E   +TH + +  +++  L+          I+ G T+S D   
Sbjct: 199 LDEAQQQRFYQRTFYGMEHVQDTHRLALMNLMLHGLD---SVSGEGGIRYGDTMSSDGEG 255

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +    L+NPPFG K              G  GR     P  S+    FL H+   L  
Sbjct: 256 LPKASLILTNPPFGTKKGG-----------GLPGRNDFTFP-TSNKQFCFLQHIYRALVP 303

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGRAA+VL  + LF G  G    +IR  L++   +  I+ LPT +F+   + T + 
Sbjct: 304 ----GGRAAVVLPDNVLFEGNVG---KQIRADLMDKCNLHTILRLPTGIFYAQGVKTNVL 356

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             S   + +   K   +   DL  ++   G KR  +  +      + Y S
Sbjct: 357 FFSRGTSAKGNTKA--VWVYDLRANMPAFG-KRTPLTREHFAVFEEAYGS 403


>gi|325926905|ref|ZP_08188186.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325926912|ref|ZP_08188193.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325542721|gb|EGD14182.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
 gi|325542728|gb|EGD14189.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas perforans 91-118]
          Length = 514

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 105/566 (18%), Positives = 192/566 (33%), Gaps = 77/566 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  L   +E  +      +       
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPEG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +  N     L  LG ++     +  IA+   +A+             R
Sbjct: 58  SRWPDLKSKSGLNLLNHYRQMLLNLGQSS-----DPMIAAIYADAQ------------TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++          + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPEVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  ++     + +  I+ G++LS            L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMD----GEGAGPIRLGNSLSNAGRELPPADIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L+     GGRA
Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCNLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             R       AT ++    N     KR        +   + Y S  NG  S   D    G
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEEAYGSDPNG-ASPRTDEGEQG 424

Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 R     R   L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553
             G  +  +++     E   L+V +S
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSS 509


>gi|168243977|ref|ZP_02668909.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194450433|ref|YP_002048548.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194408737|gb|ACF68956.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205336978|gb|EDZ23742.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 529

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 162/485 (33%), Gaps = 91/485 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T          + 
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE-----ADYL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +      G          L  LGS      L   +               F + 
Sbjct: 51  PEGYRWDDLKSRIGQDQMQFYRNLLVQLGSD--EKKLVQAV---------------FHNV 93

Query: 124 IARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              +E    L ++      ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 94  STTIEHPKQLTELVSYMDALDWYNGNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              +NPPFG     +                   +   S+  + F+ H+   L      G
Sbjct: 262 IVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP----G 303

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  
Sbjct: 304 GRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKG 360

Query: 413 -----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------RE 460
                 + +     V + +     T++ + G KR    +   +    +Y         RE
Sbjct: 361 TVTNPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLSPRE 416

Query: 461 NGKFS 465
            G++S
Sbjct: 417 EGEWS 421


>gi|218709368|ref|YP_002416989.1| type I restriction enzyme EcoKI M subunit [Vibrio splendidus LGP32]
 gi|218322387|emb|CAV18540.1| Type I restriction enzyme EcoKI, M subunit [Vibrio splendidus
           LGP32]
          Length = 484

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 166/472 (35%), Gaps = 79/472 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      E T            
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----EETGQE-----DDLL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                        G   +      L  LG+ +                +AIF++ +    
Sbjct: 51  PEGYRWADLKAKLGQEQHQFYRNMLVQLGADDHAI------------VRAIFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   +E              ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPAQLTELVDNMDKLEWFDGDTGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSH 233
            ++     ++           P     + DP  GT GFL +A  ++              
Sbjct: 154 SLISTIIKVM----------QPQPREVIQDPAAGTAGFLIEADKYIKSRTNDLDDLDDDD 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +        G EL PET  + +   L+  +E D        I+ G+TL     T  + +
Sbjct: 204 QEFQMTKAFVGLELVPETRRLALMNCLLHDIEGDAEEGA---IRLGNTLGSAGETLPQAN 260

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG     +                   +    +  + F+ H+ + LE     G
Sbjct: 261 VILTNPPFGSASSTNITRTF--------------VHPTGNKQLCFMQHIYDALEP----G 302

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +      
Sbjct: 303 GRAAVVIPDNVLFEGGKG---ADIRRDLMDKCNLHTILRLPTGIFYAAGVKTNVLFFQKG 359

Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             +   + +G  +     D+ T++   G KRR + +      ++ Y S  NG
Sbjct: 360 TQQDPNQDKGCTKETWVFDMRTNMNTFG-KRRPLTEKHFDVFVNAYGSDTNG 410


>gi|167771559|ref|ZP_02443612.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM
           17241]
 gi|167666199|gb|EDS10329.1| hypothetical protein ANACOL_02931 [Anaerotruncus colihominis DSM
           17241]
          Length = 495

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 108/561 (19%), Positives = 197/561 (35%), Gaps = 81/561 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57
           M+E T +   + + +W     L  D     +G  +  L     L+  +   +P       
Sbjct: 1   MSEQTTT---IISKVWGMCGPLRDDGVS--YGDYLEQLTYLIFLKMSDEYAKPPY----- 50

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           K      +  +      + G       +  L TLG                         
Sbjct: 51  KRETGIPTGCNWADMSDLKGVELEEKYKSILKTLGEQG-----------------GTLGK 93

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F     ++  A +LY+I +     +    ++   V   IYE L+++   +V  GA  +
Sbjct: 94  I-FKGATNKINNAAILYRIVQMIDKEKWV--SMSTDVKGEIYEGLLQKNAEDVKSGAGQY 150

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------ 231
            TPR ++      +           P  ++T+ DP CG+GGFL  A +++ D        
Sbjct: 151 FTPRPLIQAMVKCI----------RPEPMKTVADPCCGSGGFLLAAQSYLTDPQYYNLDR 200

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G E+ P T  + +  + +  +     +     I  G  L  D   G+R
Sbjct: 201 EAKEFLKKEAFRGWEIVPATFKMSLMNLYLHNIGDLYGQVP---ITLGDALLTD--PGER 255

Query: 292 FHYCLSNPPFGKKWE--KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           F Y L+NPPFGKK       +  E+E ++    R        S+  + FL H+   L+  
Sbjct: 256 FDYVLTNPPFGKKSALTFTNEEGEQEGEDLVYNRQDFWTT-SSNKQLNFLQHINTLLK-- 312

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+AA+V+  + LF G   SGE+ IR+ LLE   +  I+ LPT +F++  +   +  
Sbjct: 313 --ATGKAAVVVPDNVLFEGG--SGET-IRKKLLETCDLHTILRLPTGIFYKPGVKANVIF 367

Query: 410 LSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFS 465
              R    + +  +V + +      +  +   K+  +        +  Y   +R     +
Sbjct: 368 FDKRPAGPDRQTKEVWIYDL----RTNMHFTLKQHPMTFGDLEDFIQRYNPENRHERHET 423

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                    +RR    + L            +   DI W K   L     L   + + + 
Sbjct: 424 WSEKNPEGRWRRFTAEKIL---------ARDKTSLDIFWIKDKSLADLDNLPAPEELARD 474

Query: 526 IYPYGWAESFVKESIKSNEAK 546
           I     +       + +   K
Sbjct: 475 IMENLQSAMDGFSELLATLKK 495


>gi|160934947|ref|ZP_02082333.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753]
 gi|156866400|gb|EDO59772.1| hypothetical protein CLOLEP_03822 [Clostridium leptum DSM 753]
          Length = 507

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 94/499 (18%), Positives = 175/499 (35%), Gaps = 77/499 (15%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPT--RSAVREKYLA-- 61
            +   +W     L  D   +  +      IL    L+ L+   E    ++ V + Y    
Sbjct: 5   DIVQKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMLDETGEENTLKADVLKAYQKSL 61

Query: 62  ---FGGSNIDLESFVKVAGYS----FYNTSEYSLSTLGSTNTRNNLESYIASFS----DN 110
                     +E   +    S     YN S   L+TL     +N     ++         
Sbjct: 62  EQYARKKGKAVEQLTEEEKESRKPLLYNYSWEYLTTLEGIELKNYYMKLLSELGSTGIPK 121

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              I     ++  ++ +E+   L KI    + ++          + ++YE L+++   E 
Sbjct: 122 ISDI-----YTKAVSSIEEPKNLQKIISEINKLDWFEAKQE--GLGDLYEGLLQKNADEK 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH---- 226
             GA  + TPR ++ + T L+          SP      +DP CGT GF+  A  H    
Sbjct: 175 KSGAGQYFTPRVLIDVMTNLI----------SPKFGEKCFDPACGTFGFMISAYQHTTNG 224

Query: 227 --VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +               +G EL  + H + +    +  +          +I    +LS 
Sbjct: 225 VDLYSLSDQEMAAFQDSFYGVELVHDAHRLALMNAYLHNV--------PAHIFCEDSLSP 276

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                K F   L+NPPFG K   ++ + +                  S+  + FL  +  
Sbjct: 277 SAKRLKGFDVILTNPPFGTKKGGERTSRDDISFQ------------TSNKQLNFLQVIYR 324

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+   N   R A+VL  + LF   A      +RR L++   +  I+ LPT +F+   + 
Sbjct: 325 SLKADGNA--RCAVVLPDNVLF---ADGDGVSVRRELMDFCNLHTILRLPTGIFYAQGVK 379

Query: 405 TYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           T +   +  KTE+   K V   +   L T++ + G K   +  +     +  Y +    +
Sbjct: 380 TNVLFFTRGKTEKDNTKEVWFYD---LRTNMPSFG-KTTPLKKEHFEGFVKAYTA--EDR 433

Query: 464 FSRMLDYRTFGYRRIKVLR 482
            +   +  +   R     +
Sbjct: 434 HAVEDERWSVFTREQIAEK 452


>gi|88707229|ref|ZP_01104916.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
 gi|88698522|gb|EAQ95654.1| type I restriction-modification system, M subunit [Congregibacter
           litoralis KT71]
          Length = 262

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 76/284 (26%), Positives = 124/284 (43%), Gaps = 36/284 (12%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +P+  + N YE+LI++F  +    A++F T R +VHL   +L           P     +
Sbjct: 1   MPEDELGNGYEYLIKQFADDSGHTAQEFYTNRTLVHLMAQML----------EPKAGEII 50

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           YDPTCGTGG L   +  V       +    +  +GQEL   T A+    +++  +     
Sbjct: 51  YDPTCGTGGMLISCLAEVKRTSGDTR---TMGLYGQELINITAAIARMNLVLHGV----- 102

Query: 270 RDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                +I+ G+TL +         K F   L+NPP+  K            ++ + GR  
Sbjct: 103 --SDFDIRSGNTLHEPALIEGDRLKTFDVVLANPPYSIK-----KWNRVAWQSDQWGRNF 155

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G P        F  H+   ++      GR AI+     LF       E+++R  L+E D
Sbjct: 156 LGTPPQGRADYAFFQHILKSMDPQT---GRCAILFPHGVLFRNE----EADMRTKLIEAD 208

Query: 386 LIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           L+E ++ L  +LF+ + +   + I    K  ERRGK+  INA +
Sbjct: 209 LLECVLGLGPNLFYNSPMEACVLICRTSKLSERRGKILFINALN 252


>gi|313674352|ref|YP_004052348.1| site-specific DNA-methyltransferase (adenine-specific) [Marivirga
           tractuosa DSM 4126]
 gi|312941050|gb|ADR20240.1| Site-specific DNA-methyltransferase (adenine-specific) [Marivirga
           tractuosa DSM 4126]
          Length = 504

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 98/492 (19%), Positives = 182/492 (36%), Gaps = 60/492 (12%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           + +SL + +W  A  L  D     +G     I     L+  +    P             
Sbjct: 2   TESSLISKVWNFANVLRDDGVG--YGDYLEQITYLLFLKMADELTRPPY----------- 48

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---KAIFEDFDF 120
              +D        G+   +    +  TL        LE+Y +    +    K I     F
Sbjct: 49  NKKMDFPRIKDTEGHEIEDGDYCNWETLSKKR-GAELEAYYSQMLRSLGTEKGILGQI-F 106

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + +  +++    L ++       +         V  +IYE L+ +  S+   GA  + TP
Sbjct: 107 TKSQNKIQDPSKLLRVIDMIGKEQWTMVGAD--VKGDIYEGLLEKNASDTKSGAGQYFTP 164

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGSHHKIP 237
           R ++    A +          +P  +++++DP+CGTGGF   A +++    +     K  
Sbjct: 165 RSLIQAMVACV----------APEPMKSIHDPSCGTGGFFLAAYDYIIKNHELNKEQKAF 214

Query: 238 -PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+   T  +C+  M +  +           I     L  D   G R  Y L
Sbjct: 215 LKNSTFSGNEIVAGTRRLCLMNMFLHNIGEIDGETF---ISPNDALIAD--EGNRVDYVL 269

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPFGKK        E E +  E    R        S+  + FL H+ + L+      G
Sbjct: 270 ANPPFGKKSSMTITNEEGEQEKQELSYNRQDFWAT-SSNKQLNFLQHIRSLLK----ING 324

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            AA+VL  + LF G   SGE+ +R+ L++   +  I+ LPT +F+   +   +    N+ 
Sbjct: 325 EAAVVLPDNVLFEGG--SGET-VRKELMKTTELHTILRLPTGIFYAHGVKANVLFFDNKP 381

Query: 415 T--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470
              E     V + +    + +  +   K+  +  +  +  ++ Y   +R + K +   + 
Sbjct: 382 ASKEAWTQDVWIYD----YRTNVHHTLKKNTMKLEDLQDFINCYNPSNRNDRKETWSEET 437

Query: 471 RTFGYRRIKVLR 482
               +R+     
Sbjct: 438 PDGRWRKYSYEE 449


>gi|91213999|ref|YP_543985.1| DNA methylase M [Escherichia coli UTI89]
 gi|117626661|ref|YP_859984.1| DNA methylase M [Escherichia coli APEC O1]
 gi|91075573|gb|ABE10454.1| DNA methylase M [Escherichia coli UTI89]
 gi|115515785|gb|ABJ03860.1| DNA methylase M [Escherichia coli APEC O1]
 gi|294493863|gb|ADE92619.1| type I restriction enzyme EcoKI M protein [Escherichia coli
           IHE3034]
 gi|307629516|gb|ADN73820.1| DNA methylase M [Escherichia coli UM146]
 gi|323950567|gb|EGB46445.1| N-6 DNA methylase [Escherichia coli H252]
          Length = 529

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 88/488 (18%), Positives = 167/488 (34%), Gaps = 97/488 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + E          Y    Y    L S   +  L+ Y   +    ++ K + +   F
Sbjct: 42  ETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDDKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   +  +  N   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  HNVSTTITEPKQITALVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           + H   +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 KAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLHP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
                    + +     V + +     T++ + G KR    D+  +    ++        
Sbjct: 358 IKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVFGEDPHGLS 413

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 414 PRTEGEWS 421


>gi|268322725|emb|CAX37460.1| Pseudogene of Type I restriction enzyme mprotein (N-terminal part)
           [Mycoplasma hominis ATCC 23114]
          Length = 388

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 154/421 (36%), Gaps = 65/421 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE--PTRSAVREK 58
           M         L   IW  A  L G     DF + +L     R +   +     +   +  
Sbjct: 1   MAINNQERDELHKKIWDIANRLRGSIDGWDFKQYVLGIMFYRYISENIATYANKRQHQAG 60

Query: 59  YLAFGGSNI-DLESF-----VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
              F  + + D E+      +      F   SE  ++ + +  T N L   + +   N +
Sbjct: 61  IEDFDYTTLSDEEALTGKDDLINEKGFFILPSELFINVVKNATTNNCLNETLDNIFQNIE 120

Query: 113 -------------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDR 153
                         +F D D +S   +L     E+   L  I +  + ++L         
Sbjct: 121 SSAKGQQSENDFSGLFNDVDVNSQ--KLGRSVDERNKKLAAILQEIAAMKLGNYQDNSID 178

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + YE+L+  + S   +   ++ TP++V  L T + +             +  +YDP 
Sbjct: 179 AFGDAYEYLMSMYASNAGKSGGEYFTPQEVSELLTKIAVFNKK--------KVNRVYDPA 230

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L   +  +               +GQE+   T+ +C   M +  +  D      
Sbjct: 231 CGSGSLLLQTIKVLGKENIKDG------FYGQEVNLTTYNLCRINMFLHDIGFDK----- 279

Query: 274 KNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--L 328
            NI  G TL       +R   F   +SNPP+  KWE + + +          RF P   L
Sbjct: 280 FNIYNGDTLLSPSPEHQRKEPFDVIVSNPPYSIKWEGEDNPL-----LINDQRFSPAGIL 334

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S     F++H  + L       G AAIV     ++ G A   E +IR++L+EN+ I+
Sbjct: 335 APKSKADFAFILHSLSWLATD----GVAAIVCFPGIMYRGGA---EQKIRQYLVENNFID 387

Query: 389 A 389
           A
Sbjct: 388 A 388


>gi|237654256|ref|YP_002890570.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
 gi|237625503|gb|ACR02193.1| Site-specific DNA-methyltransferase (adenine-specific) [Thauera sp.
           MZ1T]
          Length = 530

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 110/580 (18%), Positives = 201/580 (34%), Gaps = 78/580 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+  T +   +   +W     L  D   +  +   +     L+ ++   +  R  + +  
Sbjct: 1   MSNPTAAL-DIGAKLWSLCHVLRDDGVTYHQYLSELTYLLFLKMMKETGQEERLRIWKAK 59

Query: 60  LAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
               GS  + ++  +              L           L  Y        + I+ + 
Sbjct: 60  DKKQGSPKEEQAGTRWDDLLGASAPDRLDLYK-------EMLLDYGLHGRGAVQEIYANA 112

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +       + K   L K+  +   ++ +  +V    + ++YE L+ R   E   GA  + 
Sbjct: 113 N-----TFITKPATLSKLVTDIDRLDWY--SVDRDDLGDLYEDLLERNAGEKKSGAGQYF 165

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231
           TPR ++    +++           P +   + DP  GT GFL  A N++           
Sbjct: 166 TPRHLIDSIVSVM----------KPQLGDVIQDPAAGTCGFLIAANNYLRQHNDFDSLSD 215

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +       HG EL  +TH + +  ML+  +E          +  G TLS D      
Sbjct: 216 EAQRKYRHQTFHGMELVQDTHRLALMNMLLHGIEG--------GVTYGDTLSDDHKGLPP 267

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               LSNPPFG K            K G L   G    + S+    FL H+   L+    
Sbjct: 268 ATLILSNPPFGTK------------KGGGLPTRGDLTFETSNKQFAFLQHIYRALKP--- 312

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF    G   ++IRR L++   +  I+ LPT +F+   + T +   +
Sbjct: 313 -GGRAAVVLPDNVLFESNIG---ADIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 368

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
              T++   K   +   D+  ++   G KR     D        + +  +   S+  D  
Sbjct: 369 RGDTDKGNTK--EVWVYDMRANMPAFG-KRTPFTRDY-------FRTPPDVPASQPRDKF 418

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              +       P  ++   D     R      WR+ +    +   D L     +      
Sbjct: 419 EDVFGSDPRGGPAALAARQDTGEAGR------WRRFTREQIAQRGDSLDISWLKDSGAAS 472

Query: 532 AESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
            +    +          ++ A+ S + + +   G  DP A
Sbjct: 473 TDQSRDDPSLLAGLALKELNAAVSELRSLLEELGE-DPDA 511


>gi|260221109|emb|CBA29345.1| Type I restriction enzyme StySJI M protein [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 484

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 161/464 (34%), Gaps = 66/464 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
              +   +W   + L       ++   +    LL  ++   E   S + + +     +  
Sbjct: 3   TQDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLFIKMEHENAESGILQAHKLPDYARW 60

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
                   +G +  N    +L  L                S +   +       +  + L
Sbjct: 61  PE--LTSRSGLNLLNHYRETLLKLSQ--------------SPD--RLISAIYADAQTS-L 101

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++   L ++ K+  GI+          + ++YE L+ +  SE   GA  + TPR ++   
Sbjct: 102 KEPRHLEQLVKSLDGIDWFSARQD--GLGDLYEGLLEKNASETKSGAGQYFTPRPLIDAI 159

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPI 239
             L+           P    T+ DP  GT GFL  A  ++ D                  
Sbjct: 160 VQLM----------QPQPGETVQDPAAGTAGFLIAADRYIKDHTDDLYNLTEKQRSFQRN 209

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G EL   T  + +   L+  +E D        +  G+TL +      + H  LSNP
Sbjct: 210 QAFLGMELVGSTRRLALMNCLLHGMEGDDEGV----VHVGNTLGQAGAALPKCHLSLSNP 265

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG              K G            S+  + FL H+   L      GGRAA+V
Sbjct: 266 PFGT------------AKGGGGPTRDDLTFATSNKQLAFLQHIVRHLRD----GGRAAVV 309

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L  + LF    G   +++RR L++   +  I+ LPT +F+   + T +       ++   
Sbjct: 310 LPDNVLFEAGVG---ADVRRDLMDKCRLHTILRLPTGIFYAQGVKTNVLFFEKV-SQAAT 365

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           G    +   D+  +    G KR  + D      +  Y +  NGK
Sbjct: 366 GSTSAVWVYDMRANAPKFG-KRTPLTDAHFADFITAYGTDPNGK 408


>gi|168232880|ref|ZP_02657938.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471895|ref|ZP_03077879.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458259|gb|EDX47098.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205332905|gb|EDZ19669.1| type I restriction enzyme EcoKI M protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 529

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/591 (17%), Positives = 199/591 (33%), Gaps = 99/591 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + +          Y    Y    L S   +  L+ Y   +    ++ K + +   F
Sbjct: 42  ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDKKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   + ++  N   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  HNVSTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +     +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           +        + +     V + +     T++ + G KR    +   +    +Y    +G  
Sbjct: 358 TKGTVANPHQDKNCTNDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS-PLHQSFWLDILKPMM 523
            R     +F     +V                + +A   WRK S    ++   D L    
Sbjct: 414 PRAEGEWSFNAEESEVADSEENK------NTDQHQATSRWRKFSREWIRTAKSDSLDISW 467

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
            +      A+S  +  + + EA    V+A    + A +   G  D  AD  
Sbjct: 468 LKDKDSIDADSLPEPDVLAAEAMGELVQAL-GELDALMRELG-ADEEADKQ 516


>gi|167957101|ref|ZP_02544175.1| type I restriction-modification system, M subunit [candidate
           division TM7 single-cell isolate TM7c]
          Length = 440

 Score =  212 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 132/401 (32%), Gaps = 59/401 (14%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPT 51
           M            L N IWK A +L G     DF   +L F   R +   L      E  
Sbjct: 1   MKGDNLKEQERTKLHNTIWKIANELRGSVDGWDFKAYVLGFLFYRFISENLVNYINAEER 60

Query: 52  RSAVREK-YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSD 109
           ++   +  Y        +      V    FY         +      + NL   ++    
Sbjct: 61  KTGATDFSYAELSDDQAEFGRKDTVNDKGFYILPSELFENVRKRAKNDENLNETLSKIFR 120

Query: 110 NAKAIFEDF----DFSSTIARLE------------KAGLLYKICKNFSGIELHP-DTVPD 152
           N +   + F    DF      L+            +   L K+      +EL   +    
Sbjct: 121 NIEQSAKGFDSEDDFRGLFDDLDVNSNKLGPTVTRRNERLVKLMNAIGELELGKFEDNTI 180

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+L+  +     +   +F TP++V  L   + +    ++ K        +YDP
Sbjct: 181 DAFGDAYEYLMTMYAGNAGKSGGEFFTPQEVSELLAKITVVGKTSVNK--------VYDP 232

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+G  L      +       K       +GQE+   T+ +C   M +  +  +     
Sbjct: 233 AAGSGSLLLKFAKVL------GKDNVRQGFYGQEINITTYNLCRINMFLHDINYEK---- 282

Query: 273 SKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LP 329
             NI  G TL        + F   +SNPP+  KW+ D +            RF P   L 
Sbjct: 283 -FNIAHGDTLKDPKHWDDEPFDAIVSNPPYSIKWDGDSNPT-----LINDPRFSPAGVLA 336

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             S   + F MH+ + L       G AAIV     L+ G A
Sbjct: 337 PRSKADLAFTMHMLSWLSES----GTAAIVEFPGALYRGGA 373


>gi|84390142|ref|ZP_00991404.1| type I restriction-modification system, M subunit [Vibrio
           splendidus 12B01]
 gi|84376796|gb|EAP93671.1| type I restriction-modification system, M subunit [Vibrio
           splendidus 12B01]
          Length = 524

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 162/470 (34%), Gaps = 73/470 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +WK  + L        +   +  L     ++        T  A         
Sbjct: 2   NNNEIVQKLWKLCDVLRD--DGITYTDYVTELVLLLFIKM------ETEQAEAGITKHVL 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 +      G   Y+     L  LG  +  + L + I               ++  
Sbjct: 54  PEGCRWQDITTQTGIKQYDHYRQMLLDLGKHH--DPLLAAI---------------YAGA 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              L++   L ++      ++       +  + ++YE L+ +  +E   GA  + TPR +
Sbjct: 97  QTSLKEPKHLSQLVTRIDELDWFSAR--EDGLGDLYEGLLEKNANETKSGAGQYFTPRPL 154

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHK 235
           +     L+          +P    T+ DP  GT GFL  A   + D              
Sbjct: 155 IDAIVKLM----------NPQAGETIQDPAAGTAGFLIAAHEFIKDKTDDLYDLGEKEQG 204

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G EL P T  + +   L+  +E +        I QG+TLS +     + +  
Sbjct: 205 FQKSKAYNGMELVPSTRRLALMNCLLHGIEGEGEGA----IHQGNTLSGEGAQLPKVNLI 260

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           LSNPPFG              K G          + S+  + FL H+   L+     GGR
Sbjct: 261 LSNPPFGTS------------KGGGGPTRDDLTYETSNKQLAFLQHIYRHLKP----GGR 304

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF    G    ++R  L+    +  I+ LPT +F+   + T +        
Sbjct: 305 AAVVLPDNVLFEAGVGQ---KVRADLMNKCNLHTILRLPTGIFYAQGVKTNVLFFQKGTP 361

Query: 416 EERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGK 463
           E +  +     +T ++    N     KRR + +      ++ Y S  NG+
Sbjct: 362 ENKDQEENCTTSTWVYDMRTNMNTFGKRRPLTERHFAPFIEAYGSDANGQ 411


>gi|161617830|ref|YP_001591795.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367194|gb|ABX70962.1| hypothetical protein SPAB_05694 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 529

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 167/488 (34%), Gaps = 97/488 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + +          Y    Y    L S   +  L+ Y   +    ++ K + +   F
Sbjct: 42  ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDKKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   + ++  N   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  HNVSTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +     +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
           +        + +     V + +     T++ + G KR    +   +    +Y        
Sbjct: 358 TKGTVANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 414 PRTEGEWS 421


>gi|295107442|emb|CBL04985.1| Type I restriction-modification system methyltransferase subunit
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 493

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 111/547 (20%), Positives = 202/547 (36%), Gaps = 74/547 (13%)

Query: 7   SAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           SA+++   IW  A  L      ++D+ + +     L+  +   +P  +            
Sbjct: 2   SASTINQKIWNMATVLYNDGVSNSDYLEQLTYLLFLKMADEYSKPPYNR-----PTGLPE 56

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +   E     +G   ++T +  L  LG+                  + I     F+    
Sbjct: 57  DCRWECLAGKSGAELFDTYKKMLDKLGAQG-------------GMLQEI-----FAGAQN 98

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           ++    +L ++ +           +   V  +IYE L++R   +   GA  + TPR +++
Sbjct: 99  KMSSPAILARVIQMIGTETWT--AMSQDVKGDIYEGLLQRIAEDTKSGAGQYFTPRPLIN 156

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV 241
                +           P   +T+ DP CG+GGFL  A +++ +         K      
Sbjct: 157 TIIKCV----------QPKPEKTVCDPCCGSGGFLLAAKSYIEEAYQLDADQKKFLKNEA 206

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HG E+ P T  +C+  + +  +      +    I +   L  D   G RF Y L+NPPF
Sbjct: 207 FHGWEIVPATRRLCLMNLFLHNIGD---FNDVPPITRNDALLSD--PGMRFDYVLTNPPF 261

Query: 302 GKKW-----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           GKK        +   +  E  +     F       S+  + F+ H+   L+     GG A
Sbjct: 262 GKKATLKAAAGEDGELVDEELSYSRQDFWAT---SSNKQLNFVQHIHTILKT----GGTA 314

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V+  + LF G A  GE+ +RR LLE   +  I+ LPT +F++  +   +    NR   
Sbjct: 315 AVVVPDNVLFEGGA--GET-VRRKLLETANLHTILRLPTGIFYKPGVKANVIFFENRPGS 371

Query: 417 E--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV----SRENGKFSRMLDY 470
           E  +  +V + +    + +  +   K+  + +      LD Y        +  +S   + 
Sbjct: 372 ERVQTREVWIYD----YRTNVHHTLKQHPMTETDLTDFLDCYKPGHIDERDETYSED-NN 426

Query: 471 RTFGYRRIKVLRPL-RMSFILDKTGLARLEA--DITWRKLSPLHQSFWLDILKPMMQQIY 527
               +RR  +   + R    LD T +   E   +I    L          I   + Q   
Sbjct: 427 PDGRWRRFTIDEIMGRDKLSLDITWIKTGEDISEIALSDLLASIHEKSDAIADAVEQLEA 486

Query: 528 PYGWAES 534
             G  E 
Sbjct: 487 LLGDIED 493


>gi|730885|sp|P07989|T1M_SALPO RecName: Full=Type I restriction enzyme StySPI M protein;
           Short=M.StySPI
 gi|154132|gb|AAA27143.1| restriction-modification enzyme type I M subunit [Salmonella
           enterica]
          Length = 529

 Score =  211 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 165/488 (33%), Gaps = 97/488 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + +          Y    Y    L S   +  L+ Y   +     + K + +   F
Sbjct: 42  ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRNLLVHLGADEKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   L ++  +   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  QNVNTTITQPKQLTELVSSMDSLDWYNGDHGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDAQDFQIKKAFVGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +     +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLPP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAAVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 357

Query: 411 SN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
           +        + +     V + +     T++ + G KR    +   +    +Y        
Sbjct: 358 TKGTVANPNQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTEQHLQPFETVYGEDPHGLS 413

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 414 PRTEGEWS 421


>gi|21227771|ref|NP_633693.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20906175|gb|AAM31365.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 498

 Score =  210 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 96/493 (19%), Positives = 167/493 (33%), Gaps = 72/493 (14%)

Query: 4   FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            + + +S+ + +W     L  G   + D+ + +     L+                    
Sbjct: 1   MSENTSSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKM------------------- 41

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDF 120
                    + +  G       EY+   L           Y     +  +   +      
Sbjct: 42  -AEEYRKPPYNRNIG----IPEEYTWDRLKQQRGAELDTHYRELLEELGQKPGMLGQIFL 96

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            S   ++    +LYKI             V       IYE L+++   +   GA  + TP
Sbjct: 97  KSQ-NKVSDPAMLYKIIDMIDKESWVMMGVD--TKGEIYEGLLQKNAEDTKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236
           R ++ +    L           P  ++T+ DP CGTGGF   A + +           + 
Sbjct: 154 RPLIKVMVQCL----------QPEPMKTIGDPCCGTGGFFLAAYDFLTSHHRLDRDQSRF 203

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+   T  + +  M +  +      D    I     L  D   G R+ Y L
Sbjct: 204 LKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYDYIL 258

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPFGKK        E E +  E    R        S+  + FL H+   L+     GG
Sbjct: 259 TNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWTT-TSNKQLNFLQHIHTILKT----GG 313

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL  + LF G AG     IR+ LLE   +  I+ LPT +F+   +   +     + 
Sbjct: 314 QAAVVLPDNVLFEGGAG---ETIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFEAKP 370

Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SREN--GKFS 465
             +     +V + +    + +  +   K+  +        +  Y      +R+    + S
Sbjct: 371 ASKEPWTKEVWIYD----YRTNVHHTLKKNPLKYSDLEDFIRCYNPENRFNRKETWSEES 426

Query: 466 RMLDYRTFGYRRI 478
               +R F Y  I
Sbjct: 427 PEGRFRKFSYDEI 439


>gi|303239473|ref|ZP_07326000.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
 gi|302593036|gb|EFL62757.1| Site-specific DNA-methyltransferase (adenine-specific) [Acetivibrio
           cellulolyticus CD2]
          Length = 494

 Score =  210 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 115/536 (21%), Positives = 195/536 (36%), Gaps = 71/536 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E   + +S+ + IW     L  D     +G  +   T L  L+ A E ++        
Sbjct: 1   MSEN--NTSSVVSKIWSFCNTLRDDGVG--YGDYLEQLTYLLFLKMAYEFSKPPYNRTLP 56

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                N D                  SL+ +       +    +     N K I     F
Sbjct: 57  IPEKYNWD------------------SLTEVKGAELEVHYNELLRELGKN-KGILGQI-F 96

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + +  +++    L K+       +    T+   +   IYE L+ +   +V  GA  + TP
Sbjct: 97  TKSQNKIQDPAKLSKLIDMIDKEQW--STMGADIKGQIYEGLLEKNAEDVKSGAGQYFTP 154

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      L           P  ++T+ DP CGTGGFL  A +++    S  K     
Sbjct: 155 RPLIKGIVKCL----------RPEPMKTISDPACGTGGFLLAAYDYIVQNYSLDKEQKHF 204

Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+   T  + +  M +  +      +    I    +L  D  TG R  Y L
Sbjct: 205 LKYKTFFGNEIVANTRRLALMNMFLHNIGDIDSDNF---ISSADSLIAD--TGLRVDYVL 259

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPFGKK        E E +  +    R        S+  + F+ H+   L+      G
Sbjct: 260 TNPPFGKKSSMTFTNEEGEQETDDLTYNRQDFWAT-TSNKQLNFVQHIRTLLKSD----G 314

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF G AG     +R+ LLE   +  I+ LPT +F++  +   +    N+ 
Sbjct: 315 RAAVVLPDNVLFEGGAG---ETVRKKLLETTELHTILRLPTGIFYKPGVKANVIFFDNKP 371

Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSRMLDY 470
             +     +V + +    + +  +   K+  +  D   + +  Y   +R + + +   D 
Sbjct: 372 ASKDPWTKEVWIYD----FRTNIHFTLKKNPLKVDDLDEFIKCYNPENRHDREETWKPDT 427

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
              G  R       R S+  D     +   DITW K   L     L     +   I
Sbjct: 428 NPEGRWR-------RFSYE-DIVNRDKTSLDITWIKDKSLADLDNLPDPDELANDI 475


>gi|15669405|ref|NP_248215.1| type I restriction-modification enzyme 1 subunit M
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2496162|sp|Q58617|Y1220_METJA RecName: Full=Uncharacterized adenine-specific methylase MJ1220
 gi|1592326|gb|AAB99225.1| type I restriction-modification enzyme 1, M subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 578

 Score =  210 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/536 (17%), Positives = 183/536 (34%), Gaps = 64/536 (11%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L   + + A+ +        +  V+L F   + +          +++++      +
Sbjct: 83  SKDKLIGLLKQGADLIRTQVD---YK-VLLLFLFFKAISDKYLLKVEELKKEFEDLDEED 138

Query: 67  I------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           I      ++     V G   Y    +        +  N L   +    +    + E    
Sbjct: 139 IYVLANEEILELYDVEGKKLYV---WHEVANNPEDFINALNKIVEMNKEKLSGLDELIK- 194

Query: 121 SSTIARLEKAG---LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            + +  L +     ++  +   FS  +    +    ++ + YE  +  F    ++   + 
Sbjct: 195 RTGLPTLFENENRHIVQHLINLFSRADFSEASYD--ILGDAYEWTLNYFAPTKAKE-GEV 251

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP +V  L   L+   DD +            DP CG+G  L +               
Sbjct: 252 YTPIEVSKLIAHLVEPKDDEVI----------LDPACGSGSMLIEQYRF-------AGSN 294

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------- 290
           P +V  GQE    T  +     ++  +           +  G +L    F          
Sbjct: 295 PNIVLVGQERNDVTAVLAKLNFILHGINL-----KDAKVFIGDSLLNPKFESFIXEVKGT 349

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +    ++NPP+ +    +      E           G P  +     ++  +    E  
Sbjct: 350 GKADKVVANPPWNQDGYDENTLKVNEKYKDIY---MYGFPNKNSADWAWVQLINYYTEK- 405

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
                +A IVL S  LF G     E  IR+  +++DLIEA+V LP  LF+       + I
Sbjct: 406 -----KAGIVLDSGALFRGGK---EKTIRKRFVDDDLIEAVVLLPEKLFYNCPAPGIILI 457

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRML 468
           L+  K EER+GK+  INA++ +       KK   ++D+   +I   Y   ++   F +++
Sbjct: 458 LNKNKPEERKGKILFINASNEYIKHPEV-KKLNKLSDENIEKIAKAYKEFKDVDGFCKVV 516

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           D          +   L +S I +   +   E      KL   +   +  +   + +
Sbjct: 517 DIEEIRKNDYNLNVSLYISPIEEDEDVDLGEVYEELNKLHNEYLEKFEVVKGYLEE 572


>gi|323697974|ref|ZP_08109886.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio sp. ND132]
 gi|323457906|gb|EGB13771.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfovibrio desulfuricans ND132]
          Length = 478

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 169/466 (36%), Gaps = 78/466 (16%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +   +   +WK  + LWGD   +  +   +     L+  E         + E Y     
Sbjct: 2   TTTQDIVQKLWKLCDILWGDGVTYHQYVNELTYLLFLKMAEET--EKEDQLPEAYHWKKL 59

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
             +D      V   +FY      L T G               S   + I     +++  
Sbjct: 60  VEMD-----GVEQLTFYKKLLIDLGTQG---------------SKLVQDI-----YANAS 94

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           + +++   L K+  +   ++ +        + ++YE L+ +  +E   GA  + TPR ++
Sbjct: 95  SFIQQPKNLRKLVDSLDELDWYSAREE--GLGDLYEGLLEKNATESKRGAGQYFTPRRLI 152

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKI 236
            +   L+           P     + DP  GTGGFL +A  ++ +   +           
Sbjct: 153 EVMVELM----------QPQAGEVIQDPAAGTGGFLINADAYIRERTGNLYNLPESKQNF 202

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL  + H +C+  +++  +E+         I  G TL     +  +    L
Sbjct: 203 QRRQAFQGMELVQDVHRLCLMNLMLHGIETP--------IALGDTLGPQGASMPKADVIL 254

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG                G   R        ++  + FL H+   L+     GGRA
Sbjct: 255 TNPPFGT------------ATGGGHTRREDFTFPTNNRQLAFLQHVYRGLKP----GGRA 298

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G    +IR  L++   +  I+ LPT +F+   + T +      +T+
Sbjct: 299 AVVLPDNVLFEDNTG---RKIRTDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFQRGETD 355

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +   K   +   DL T++ + G KR  +           Y    NG
Sbjct: 356 KGNTKA--VWVYDLRTNMPSFG-KRTPLTRAHFSAFEQAYGDDPNG 398


>gi|124010329|ref|ZP_01694979.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC
           23134]
 gi|123983603|gb|EAY24056.1| type I restriction enzyme StySJI M protein [Microscilla marina ATCC
           23134]
          Length = 496

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 94/465 (20%), Positives = 173/465 (37%), Gaps = 64/465 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFG 63
           + AS+ + +W  A+ L  D     +G     I     L+                  A  
Sbjct: 2   TEASIVSKVWNFADVLRDDGVG--YGDYLEQITYLLFLKM-----------------AEE 42

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---KAIFEDFDF 120
              +D      + G    N  + S   L S      LE++      +    K I     F
Sbjct: 43  SGRVDFPRLKDINGNELPNGEQCSWQNLRSKK-GAALEAFYTQMLRSLGSEKGILGQI-F 100

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++    L KI    +  +    ++   +   IYE L+ +  S+V  GA  + TP
Sbjct: 101 TKAQNKVQDPAKLLKIIDMINREDW--SSMGADLKGKIYEGLLEKNASDVKSGAGQYFTP 158

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKI 236
           R ++    A +           P   +T+ DP+CGTGGF   A +++ D         K 
Sbjct: 159 RALIQAMVACV----------QPQPNKTIVDPSCGTGGFFLAAYDYIVDNHELDRDEKKF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G E+   T  +C+  M +  +      D +  I     L       +R  Y L
Sbjct: 209 LKKETFYGNEIVASTRRMCLMNMFLHNI---GEIDGASLISSADALIAQG--SQRHDYVL 263

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPFGKK        + E +  +    R        S+  +  L H+ + L++     G
Sbjct: 264 ANPPFGKKSSMTITNEDGEQERQDLSYNRQDFWAT-TSNKQLNVLQHIKSLLKV----NG 318

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            AA+VL  + LF G AG     +R+ LL+   +  I+ LPT +F+   +   +    N+ 
Sbjct: 319 EAAVVLPDNVLFEGGAG---ETVRKELLKTTELHTILRLPTGIFYANGVKANVLFFDNKA 375

Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             +     +V + +    + +  +   +++ +     +  + +Y 
Sbjct: 376 AAKTPWTQEVWVYD----YRTNVHHTLRKKPLRLADLQAFVKLYN 416


>gi|206889888|ref|YP_002249480.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741826|gb|ACI20883.1| type I restriction enzyme EcoKI M protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 485

 Score =  209 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 99/524 (18%), Positives = 188/524 (35%), Gaps = 68/524 (12%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGG 64
           ++++   +W     L  D     +G  +  L     L+  +   E T+    +   +   
Sbjct: 5   SSTIVQRLWNYCNVLRDDGVS--YGDYVEQLTYLLFLKMAD---EQTKPPFNK--PSIIP 57

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
             +D +S ++  G S      + L +LG                   K +     F    
Sbjct: 58  KELDWQSLIERDGDSLEVHYRHILESLGKE-----------------KGMLGVI-FRKAQ 99

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +++    L ++ +  +        +   +   IYE L+++   +V  GA  + TPR ++
Sbjct: 100 NKIQDPAKLKRLIELINNETWT--GLDIDIKGEIYEGLLQKNAEDVKGGAGQYFTPRPLI 157

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---- 240
                 +          SP   +T++DP CGTGGFL  A  +++      K         
Sbjct: 158 KAIVECI----------SPEPGQTIHDPACGTGGFLLAAHEYISKNYRLDKEQKRFLKYN 207

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G+++      +CV  + +  +  +        I  G +L  D  TG+R+   L+NPP
Sbjct: 208 TFSGRDIVDSVVRLCVMNLYLHGIGGEESP-----IATGDSLISD--TGERYDIILTNPP 260

Query: 301 FGKKWEKD--KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           FGKK          + + ++    R        S+  + FL      ++      G+ A+
Sbjct: 261 FGKKSSITIVNGEGKADRESLTYERRDFWAT-TSNKQLNFLQ----HVKTITKINGKVAM 315

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V+  + LF G AG     IRR LL    +  ++ LPT +F+   +   +     RK    
Sbjct: 316 VVPDNVLFEGGAG---ETIRRKLLAECDVHTLLRLPTGIFYAQGVKANVLFFD-RKPASE 371

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTF 473
           +   + +   DL T++ +   K   +  +     +  Y      +RE  +  R   Y   
Sbjct: 372 KPWTEKLWIYDLRTNM-HFTLKTNPLRYEHLEDFIRCYNPENRRNREETERFRAFTYEEL 430

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
             R    L    +     +        DI  R+++   QS    
Sbjct: 431 IQRDKVSLDIFWLKDESLEDSENLPSPDILAREITENLQSALEQ 474


>gi|254414884|ref|ZP_05028648.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196178373|gb|EDX73373.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 484

 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 96/465 (20%), Positives = 167/465 (35%), Gaps = 80/465 (17%)

Query: 5   TGSAASLANFIWKNAEDLWGD-FKHTDFGKVI-LP-FTLLRRLECALEPTRSAVREKYLA 61
           T +   +   +W     L  D   +  +  VI L     L+         +    E+ L 
Sbjct: 3   TATH-DIVAKLWNLCNILKDDGVTYHQY--VIELTYLLFLKM-------AKETSTERQLP 52

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-SDNAKAIFEDFDF 120
            G    DLE   +     FY                  L SY+ S  S   K I     F
Sbjct: 53  EGYRWDDLEGQTEKP-LEFY----------------KGLLSYLGSHGSTLVKEI-----F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +   + ++K   L  +      ++ +        + +IYE L+ +  +E   GA  + TP
Sbjct: 91  TDAHSSIKKDTTLSTLVTKIDKLDWYSAKRE--GLGDIYEGLLEKNANEKKAGAGQYFTP 148

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSH 233
           R ++     ++    D +            DP  GTGGFL  A  ++ +           
Sbjct: 149 RPLIDSMVRVMRPTLDDII----------QDPAAGTGGFLIAANRYIREHSNPNSWTNKQ 198

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +        +G E   +TH + +  +++  L+S P+      IQ G TLS D        
Sbjct: 199 NNKYHGNTFYGMEHVQDTHRLALMNLILHGLDSAPQG---AGIQYGDTLSPDGQALPPAT 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG K +        + +              S+    FL H+   L+     G
Sbjct: 256 LILTNPPFGSK-KGGGLPNRSDFEF-----------PTSNKQFCFLQHIYLGLKP----G 299

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA V   + LF    G    +IR  L++   +  I+ LP+ +F+   + T +   +  
Sbjct: 300 GRAAAVFPDNVLFESNVG---RQIRTALMDKCNLHTILRLPSGIFYAQGVKTNVLFFTRG 356

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           K  ++ G  + +   DL T+    G+ R  +  +   +    +  
Sbjct: 357 K--KQTGNTKEVWVYDLRTNTPQFGR-RTSLRREYFAEFEAFFGD 398


>gi|256810723|ref|YP_003128092.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus fervens AG86]
 gi|256793923|gb|ACV24592.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methanocaldococcus fervens AG86]
          Length = 577

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/549 (17%), Positives = 190/549 (34%), Gaps = 79/549 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L + + + A+ +        +  V+L F   + +        + ++E++      +
Sbjct: 83  SKDKLISLLKQGADLIRTHVD---YK-VLLLFLFFKAISDKYLLKVAELKEEFEDLNEED 138

Query: 67  I------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-------- 112
           I      ++     V G   Y             N  NN E +I + +   +        
Sbjct: 139 IYVLANEEILELYDVEGKKLYV----------WQNVANNPEDFITALNKIVEMNREKLSG 188

Query: 113 --AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              + +     +     E   ++  +   FS  +    +    ++ + YE  +  F    
Sbjct: 189 LDELIKRTGLPTLFEN-ENRQIVQHLINLFSRADFSEASYD--ILGDAYEWTLNYFAPTK 245

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           ++   +  TP +V  L   L+   DD +            DP CG+G  L +        
Sbjct: 246 AKE-GEVYTPIEVSKLIAHLVEPRDDEVI----------LDPACGSGSMLIEQYRF---- 290

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
                  P +V  GQE    T  +     ++  +           +  G +L    F   
Sbjct: 291 ---AGSNPNIVLVGQERNDVTAVLAKLNFILHGINL-----KDAKVFIGDSLLNPKFESF 342

Query: 290 -------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   +    ++NPP+ +    +      E  N        G P  +     ++  +
Sbjct: 343 IKEVKKIDKADKVVANPPWNQDGYDEDTLKVNEKYNYIY---KYGFPNKNSADWAWVQLI 399

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
               E       +A IVL S  LF       E  IR+  +++DLIEA+V LP  LF+   
Sbjct: 400 NYYTEK------KAGIVLDSGALFRSGR---EKTIRKKFVDDDLIEAVVLLPEKLFYNCP 450

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
               + IL+  K EER+GK+  INA++ +       KK   ++D+   +I   Y   ++ 
Sbjct: 451 APGIILILNKNKPEERKGKILFINASNEYVKHPEV-KKLNKLSDENIEKIAKAYKEFKDV 509

Query: 463 K-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
             F +++D          +   L +  I +   +   E      KL   +   + +++K 
Sbjct: 510 DGFCKVVDIEEIKNNDYNLNVSLYVFPIEEDEDIDLNEVYDELNKLHNEYLEKF-EVVKG 568

Query: 522 MMQQIYPYG 530
            +++I    
Sbjct: 569 YLEEIKEIK 577


>gi|313664976|ref|YP_004046847.1| type I restriction-modification system, M subunit [Mycoplasma
           leachii PG50]
 gi|312949714|gb|ADR24310.1| putative type I restriction-modification system, M subunit
           [Mycoplasma leachii PG50]
          Length = 355

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 151/370 (40%), Gaps = 55/370 (14%)

Query: 120 FSSTIARLEKA-----GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F  ++ +L          +  +    + I          ++  IYE+LI +F S   + A
Sbjct: 22  FEKSLDKLGSNSKEQQETINNLLDTMNKIPTVKQDYD--ILGFIYEYLIAQFASSAGKKA 79

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP +V  L + ++              I ++YDPT G+G  L +  +         
Sbjct: 80  GEFYTPHEVSDLMSKIVAHHLKNRS------IISVYDPTSGSGSLLLNIGDEFKKYNKGS 133

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGK-- 290
                +  + QEL+ ET  +    +++R +          ++++G TL +D   F  +  
Sbjct: 134 SP---VSYYAQELKTETFNLTRMNLIMRNINPSEI-----HVRRGDTLEQDWPIFENEDL 185

Query: 291 ------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLA 343
                      +SNPP+ + W  +        K+    R+   G+   +     FL+H  
Sbjct: 186 STYKRLTVDAVVSNPPYSQSWNSE--------KHTNDPRYVEYGIAPKTKADYAFLLHDL 237

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             ++      G  AIVL    LF G     E +IR+ L+E   I+ I+ LP+++FF T I
Sbjct: 238 YHIDPE----GIMAIVLPHGVLFRGN---SEKQIRQKLIEKGQIDTIIGLPSNMFFGTGI 290

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            T + IL  +K       +  ++A+ L+        K    +  Q ++I D+  +R   +
Sbjct: 291 PTIIMILKKQKP---INDILFVDASQLYIKE----GKNNKFSQSQIKKIADVVNNRIEVE 343

Query: 464 -FSRMLDYRT 472
            FSR++ +  
Sbjct: 344 KFSRIVKFDE 353


>gi|73670715|ref|YP_306730.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
 gi|72397877|gb|AAZ72150.1| type I restriction-modification system specificity subunit
           [Methanosarcina barkeri str. Fusaro]
          Length = 498

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/465 (19%), Positives = 158/465 (33%), Gaps = 65/465 (13%)

Query: 4   FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            + + +S+ + +W     L  G   + D+ + +     L+                    
Sbjct: 1   MSENTSSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKM------------------- 41

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDF 120
                    + +  G       EY+   L           Y     +  +   +     F
Sbjct: 42  -AEEFSKPPYNRNIG----IPEEYTWDKLKQQRGAELDTRYRELLEELGQKPGMLGQI-F 95

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                ++    +LYKI             V       IYE L+++   +   GA  + TP
Sbjct: 96  LKAQNKVSDPAMLYKIIDMIDKESWVMMGVD--TKGEIYEGLLQKNAEDTKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236
           R ++ +    L           PG ++T+ DP CGTGGF   A + +           + 
Sbjct: 154 RPLIKVMVQCL----------QPGPLKTIGDPCCGTGGFFLAAYDFLTSHYRLDKEQSRF 203

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+   T  + +  M +  +      D    I     L  D   G R+ Y L
Sbjct: 204 LKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYDYIL 258

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPFGKK        E E +  E    R        S+  + FL H+   L+     GG
Sbjct: 259 TNPPFGKKSSMTFTNEEGEQEKEELTYNRQDFWTT-TSNKQLNFLQHIHTILKT----GG 313

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL  + LF G AG     IR+ LLE   +  I+ LPT +F+   +   +     + 
Sbjct: 314 QAAVVLPDNVLFEGGAG---ETIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFEAKT 370

Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             +     +V + +    + +  +   K+  +        +  Y 
Sbjct: 371 ASKEPWTKEVWIYD----YRTNVHHTLKKNPMKFSDLEDFIKCYN 411


>gi|227500725|ref|ZP_03930774.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217183|gb|EEI82532.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 265

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           +   N +   A  L G ++   +  VI+P  ++RR ECALE T+  V E Y         
Sbjct: 26  SKEVNLVLSIANSLRGAYEAERYKDVIIPMVIIRRFECALEETKDKVVELYK--KDPKKP 83

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              + + +GY FYNTSE++L  L   S N  +N E+Y+  FS N K I  + D  + I +
Sbjct: 84  AIFYERESGYPFYNTSEFNLKNLLNDSDNIASNFENYVNGFSGNVKGILSNLDIYNQIKK 143

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+K+  LY I K FS ++L P T+ +  M  ++E +IRR+    +  A D  TPR+V+ L
Sbjct: 144 LDKSNRLYIIIKKFSEVDLDPRTIDNHKMGYLFEDIIRRYSE--NVEAGDHYTPREVIRL 201

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
              +LL           G + T+ D  CG    +    N
Sbjct: 202 LVDVLLAEGCDDLLTGDGKVCTVLDAACGFRVIIVIEAN 240


>gi|20090959|ref|NP_617034.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
 gi|19916043|gb|AAM05514.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
          Length = 498

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/465 (18%), Positives = 157/465 (33%), Gaps = 65/465 (13%)

Query: 4   FTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            + + +S+ + +W     L  G   + D+ + +     L+                    
Sbjct: 1   MSENTSSIVSKVWSFCNVLRDGGVSYGDYLEQLTYLIFLKM------------------- 41

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDF 120
                    + +  G       +Y+   L           Y     +  +   +     F
Sbjct: 42  -AEEYRKPPYNRDIG----IPEKYTWDNLKQQRGAELDTRYKELLEELGQKPGMLGQI-F 95

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                ++    +LYKI             V       IYE L+++   +   GA  + TP
Sbjct: 96  LKAQNKVSDPAMLYKIIDMIDKESWVMMGVD--TKGEIYEGLLQKNAEDTKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236
           R ++ +    L           P  ++T+ DP CGTGGF   A + +           + 
Sbjct: 154 RPLIKVMVQCL----------RPEPMKTIGDPCCGTGGFFLAAYDFLTSNYRLDREQSRF 203

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G E+   T  + +  M +  +      D    I     L  D   G R+ Y L
Sbjct: 204 LKNKTFGGNEIVAGTRRLALMNMFLHNI---GEIDGEPMISNSDALIAD--PGYRYDYIL 258

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPFGKK        E E +  +    R        S+  + FL H+   L+     GG
Sbjct: 259 TNPPFGKKSSMTFTNEEGEQEKEDLTYNRQDFWT-STSNKQLNFLQHIHTILKT----GG 313

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL  + LF G AG     IR+ LLE   +  I+ LPT +F+   +   +     + 
Sbjct: 314 QAAVVLPDNVLFEGGAG---ETIRKKLLETTDLHTILRLPTGIFYANGVKANVLFFEAKP 370

Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             +     +V + +    + +  +   K+  +        +  Y 
Sbjct: 371 ASKNPWTKEVWIYD----YRTNVHHTLKKNPMKYSDLEDFIKCYN 411


>gi|289667521|ref|ZP_06488596.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 514

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 100/566 (17%), Positives = 188/566 (33%), Gaps = 77/566 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL             V+ +Y     S 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLLLF-----------VKMEYEQVQNSP 48

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                  + + +         L +    N  N+ +  +     ++  +       +   R
Sbjct: 49  NFEHKLPEGSRWP-------DLKSKSGRNLLNHYQQMLLDLGQSSDPMIAAIYADAQ-TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++          + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIRCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPGVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +      + +  I+ G++L          +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMN----GEGAGPIRLGNSLGAAGRDLPPANIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L+     GGRA
Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAT 365

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             R       AT ++    N     KR            D Y +  NG  S   D    G
Sbjct: 366 NPRQDTSCTQATWVYDLRSNMPSFGKRTPFGPTHLTPFEDAYGTDPNG-ASPRTDQGEEG 424

Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 R     R   L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553
             G  +  +++     E   L+V +S
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSS 509


>gi|147920299|ref|YP_685930.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
 gi|110621326|emb|CAJ36604.1| type I restriction modification system, methyltransferase subunit
           [uncultured methanogenic archaeon RC-I]
          Length = 485

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 96/539 (17%), Positives = 182/539 (33%), Gaps = 73/539 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYL 60
               ++++   +W     L  D     +G  +  L     L+  +   E ++    +   
Sbjct: 1   MATESSTIVQRLWNYCNVLRDDGVS--YGDYVEQLTYMLFLKMAD---EQSKPPFNK--P 53

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +   +  D  S +   G         +L  LG                   K +     F
Sbjct: 54  STIPAGYDWSSLLSKDGVELETHYIDTLKKLGQE-----------------KGMLGVI-F 95

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             +  +++    L ++    +G       +   V   IYE L+++   +   GA  + TP
Sbjct: 96  RKSQNKIQDPAKLKRLIDLINGETWT--GLDIDVKGEIYEGLLQKNAEDTKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++     ++           P    T+ DP CGTGGFL  A ++++      +     
Sbjct: 154 RPLIKAMVDVI----------RPQPGETICDPACGTGGFLLAAHDYISKKYQLDRDQKKF 203

Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G+++      +CV  + +  +  D           G  L  D   G RF   L
Sbjct: 204 LKLNTFKGKDIVDNVARLCVMNLYLHGIGGDESPVDV-----GDALVAD--PGDRFDIIL 256

Query: 297 SNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +NPPFGKK            ++E    E   F       S+  + FL H+   L+     
Sbjct: 257 TNPPFGKKSSITIVNGDGKGDREALVYERQDFWATT---SNKQLNFLQHVKTLLK----I 309

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+ AIV+  + LF G AG     +R  LL    +  ++ LPT +F+   +   +     
Sbjct: 310 NGKCAIVVPDNVLFEGGAG---ETVRHKLLMECDVHTLLRLPTGIFYAQGVKANVLFFDR 366

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRM 467
           R    +  + Q +   DL T++ +   K   +  D  +  +  Y       R+  +  + 
Sbjct: 367 R-PASKDPQTQKLWIYDLRTNM-HFTLKTNPLKYDDLQDFIQCYNPENRHERKETERFKA 424

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             Y     R    L    +           L A     +    +    L+  + + +++
Sbjct: 425 FTYDQLMQRDKVSLDIFWLKDE-SLEDSENLPAPEVIAREIVENLEAALEQFRGIEEEL 482


>gi|289664156|ref|ZP_06485737.1| type I restriction enzyme EcoKI M protein [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 514

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 103/566 (18%), Positives = 190/566 (33%), Gaps = 77/566 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  L   +E  +      +       
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPEG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +  N     L  LG ++     +  IA+   +A+             R
Sbjct: 58  SRWPDLKSKSGLNLLNHYRQMLLNLGKSS-----DPMIAAIYADAQ------------TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++          + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------HKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCV----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDDLYGPGVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +      + +  I+ G++L          +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGMN----GEGAGPIRLGNSLGIAGRDLPPANIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L+     GGRA
Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSAA 365

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             R       AT ++    N     KR        +   D Y +  NG  S   D    G
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEDAYGTDPNG-ASPRTDEGEEG 424

Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 R     R   L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553
             G  +  +++     E   L+V + 
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509


>gi|88810391|ref|ZP_01125648.1| type I restriction-modification system specificity subunit
           [Nitrococcus mobilis Nb-231]
 gi|88792021|gb|EAR23131.1| type I restriction-modification system specificity subunit
           [Nitrococcus mobilis Nb-231]
          Length = 481

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 164/483 (33%), Gaps = 71/483 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHT-DFGKVI---LPFTLLRRLECALEPTRSAVREKYLAF 62
           S   L   +W  A  L         +G  I        L+      +  R  +  +  A 
Sbjct: 2   SNEQLVAKVWNYAHVLR---DQGISYGDYIEQITYLLFLKM-----DQEREDLLGETSAI 53

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                         G        ++L  LG  +                  +     F  
Sbjct: 54  -PPLWSWAQLANKDGDELELQYRHTLEQLGRED-----------------GLIGTI-FRK 94

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              +L     L ++           +     V   IYE L+ R  +EV  GA  + TPR 
Sbjct: 95  AQNKLSDPAKLKRVVSLIDKEGPWIELKV-DVKGEIYEGLLERNAAEVKSGAGQYFTPRP 153

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI---PPI 239
           V+      +           P +  T+ DP CGTGGFL  A +H+       +       
Sbjct: 154 VIEAIVKCV----------DPKIGETVCDPACGTGGFLLAAYDHLKTQTQDREKLRALRH 203

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              HG ++  E   +C   + +  + +D        ++QG  L+ D   G+RF   L+NP
Sbjct: 204 TAFHGLDIVDEVVRLCAMNLYLHGIGNDSSP-----VEQGDALASDG--GERFKVVLTNP 256

Query: 300 PFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           PFGKK       +  +V  E ++ E   F        +    FL H+   L       GR
Sbjct: 257 PFGKKSSYKVVGEDGSVTTEREHYEREDFKFTTT---NKQFNFLQHIMTIL----EANGR 309

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           A +VL  + LF     +GE  IR+ LL+      ++ LPT +++   +   +     R  
Sbjct: 310 AGVVLPDNVLFEAG-RAGEG-IRKRLLQGFNFHTLLRLPTGIWYSPGVKANVLFFDKRPA 367

Query: 416 EERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                +VQ   A  ++    N  K  K + + +      +  Y +R+  +  R   Y   
Sbjct: 368 SR---EVQ-TKALWVYDYRTNVHKTQKTKRLTNADLEDFVRCYQARQETERFRRFTYEEL 423

Query: 474 GYR 476
             R
Sbjct: 424 AQR 426


>gi|307287470|ref|ZP_07567522.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306501516|gb|EFM70815.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
          Length = 343

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 152/356 (42%), Gaps = 40/356 (11%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP  V  +   +L         +      +++DPT G+G  + +  N++  
Sbjct: 1   AGKKAGEFYTPHMVSDMMAQILT------LDQKERRFFSVFDPTMGSGSLMLNVRNYLT- 53

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T 
Sbjct: 54  ------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTD 102

Query: 290 KRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           + + +   + NPP+   W  D   ++         R+G  L   S     FL+H    L+
Sbjct: 103 EPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLK 157

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  AIVL    LF G A  G   IR+ LLE+  I A++ +P +LFF T+I T +
Sbjct: 158 ET----GTMAIVLPHGVLFRGAAEGG---IRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 210

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R+  + ++ 
Sbjct: 211 IVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKGVEKYAH 263

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +  +         +  P  +    ++  +  +      +K+    Q    ++L+ +
Sbjct: 264 LATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAL 319


>gi|282907755|ref|ZP_06315596.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328366|gb|EFB58638.1| type I restriction modification system modification protein
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 270

 Score =  207 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 43/294 (14%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L              
Sbjct: 1   GEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG---------- 42

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  F  
Sbjct: 43  KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDA 97

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L+      G
Sbjct: 98  VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 148

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
           K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  ++   K+S 
Sbjct: 204 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKKTIDKYSY 253


>gi|300114420|ref|YP_003760995.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299540357|gb|ADJ28674.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 499

 Score =  207 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 173/477 (36%), Gaps = 73/477 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           + AS+ + +W     L  D     +G  +  L     L+  +                  
Sbjct: 2   NTASIISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMAD------------------ 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                   +    G       EY+  +L +         YIA          +     F+
Sbjct: 42  --EYSQPPYRHEVG----IPPEYNWQSLKTKRGAELEGHYIALLRALGTRPGMLGQI-FT 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               +++    LY++ K   G++         +  +IYE L+ +   +   GA  + TPR
Sbjct: 95  KAQNKIQDPAKLYRLIKMVDGVQWVMIGAD--IKGDIYEGLLEKNAEDTKSGAGQYFTPR 152

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHK 235
            ++      +           P   +T+ DP CGTGGF   A + ++D            
Sbjct: 153 ALIKAMVECV----------RPEPGKTIADPACGTGGFFLAAYDFLSDPKHYSLDKAQKA 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  HG E+   T  +C+  M +  +      D    I     L     +G+ + Y 
Sbjct: 203 FLKHQTFHGNEIVANTRRLCLMNMFLHNI---GEIDGESAISPNDALVAP--SGQSYDYV 257

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           L+NPPFGKK        E E ++ +    R        S+  + F+ H+   L+      
Sbjct: 258 LANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWAT-TSNKQLNFVQHIRALLKST---- 312

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA+V+  + LF G A  GE+ IRR LLEN  +  I+ LPT +F+   +   +    NR
Sbjct: 313 GKAAVVVPDNVLFEGGA--GET-IRRKLLENTDLHTILRLPTGIFYAKGVKANVLFFDNR 369

Query: 414 K--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSR 466
           +        +V   +    + +  +   K++ +  +   + +  Y   +R   + S 
Sbjct: 370 EASPRPWTKEVWYYD----YRTNVHHTLKKKPMRYEDLAEFIACYHPTNRHERRESW 422


>gi|297572114|ref|YP_003697888.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296932461|gb|ADH93269.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 231

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 108/193 (55%), Gaps = 4/193 (2%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              IW  AE L GD+K  ++G V+LPFT+L RL+  L  T+ AV +  +      +    
Sbjct: 10  VALIWNIAEILRGDYKEHEYGDVVLPFTVLTRLDSVLVDTKQAVLDIKVTSVPLQVKELQ 69

Query: 72  FVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           + K  GY  +NTS ++L TL     N   NL  Y+ +F+  A+ + E ++F +   RL+K
Sbjct: 70  YAKATGYPLWNTSNFTLKTLLDDPDNLEQNLTYYVQAFAPAAREVMEAYNFYNVFERLDK 129

Query: 130 AGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           AGLLY++   F  S + LHPD V +  M  I+E LIRRF    +E A +  TPR+V+ L 
Sbjct: 130 AGLLYQVLSEFTSSKVNLHPDVVSNDQMGYIFEELIRRFSELSNETAGEHFTPREVISLM 189

Query: 188 TALLLDPDDALFK 200
             LL +P++ + +
Sbjct: 190 VNLLFNPEEDINR 202


>gi|77164707|ref|YP_343232.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|254433310|ref|ZP_05046818.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|76883021|gb|ABA57702.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|207089643|gb|EDZ66914.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 499

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 174/477 (36%), Gaps = 73/477 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           + AS+ + +W     L  D     +G  +  L     L+  +                  
Sbjct: 2   NTASIISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMAD------------------ 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
                   + +  G       EY+  +L +         YIA          +     F+
Sbjct: 42  --EYSQPPYRREVG----IPPEYNWQSLKTKRGAELEGHYIALLRALGARPGMLGQI-FT 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               +++    LY++ K   G++         +  +IYE L+ +   +   GA  + TPR
Sbjct: 95  KAQNKIQDPAKLYRLIKMVDGVQWVMMGAD--IKGDIYEGLLEKNAEDTKSGAGQYFTPR 152

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHK 235
            ++      +           P   RT+ DP CGTGGF   A + ++D            
Sbjct: 153 ALIKAIVECV----------RPEPDRTIADPACGTGGFFLAAYDFLSDPKHYSLDKAQKH 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  HG E+   T  +C+  M +  +      D    I     L     +G+ + Y 
Sbjct: 203 FLKHETFHGNEIVANTRRLCLMNMFLHHI---GEIDGESAISPNDALVAP--SGQSYDYV 257

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           L+NPPFGKK        E E ++ +    R        S+  + F+ H+   L+      
Sbjct: 258 LANPPFGKKSAMSFTNEEGEQESDDLTYNRQDFWAT-TSNKQLNFVQHIRTLLKTT---- 312

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA+V+  + LF G A  GE+ IRR LLEN  +  I+ LPT +F+   +   +    NR
Sbjct: 313 GKAAVVVPDNVLFEGGA--GET-IRRKLLENTDLHTILRLPTGIFYAHGVKANVLFFDNR 369

Query: 414 K--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSR 466
           +        +V   +    + +  +   K++ +  +   + +  Y   +R   + S 
Sbjct: 370 EASPHPWTKEVWYYD----YRTNVHHTLKKKPMRYEDLAEFIACYHPTNRHERRESW 422


>gi|189426563|ref|YP_001953740.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189422822|gb|ACD97220.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 486

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 96/484 (19%), Positives = 171/484 (35%), Gaps = 71/484 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           + ++L   +W     L  D     +G  +  L     L+  +   +   +          
Sbjct: 2   TTSALIQKVWNFCHTLRDDGVS--YGDYLEQLTYLLFLKMADEYAQEPYNR-----DTHI 54

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               D  S    +G          L  LG   T   +   I               F   
Sbjct: 55  PKGHDWASLRGKSGEPLEAHYLAILHKLG---TGPGMLGAI---------------FFKA 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++    L ++ +     +     +      ++YE L+++   +   GA  + TPR +
Sbjct: 97  QNKIQDPAKLARLVQMIDAEKWV--GMDTDTKGDLYEGLLQKNAEDTKSGAGQYFTPRHL 154

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPP 238
           +    A +           P  ++T+ DP CGTGGF   A   +   G        +   
Sbjct: 155 IDAMVACI----------RPEPLKTIADPACGTGGFFLGAHKWLTRPGSSLDKKQKEFLR 204

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               HG E+ P T  +C+  + +  +      D   N+ +   L  +    +RF Y L+N
Sbjct: 205 HKTFHGNEIVPNTRRLCLMNLFLHNI---GELDGEPNVDRSDALIAE--PKQRFDYVLAN 259

Query: 299 PPFGKKWEKDKDAVEKEHKNG--ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           PPFGKK        E E         R        S+  + FL H+A+ L+      G+A
Sbjct: 260 PPFGKKSSMTFTNEEGEEDKDALTYERQDFWET-TSNKQLNFLQHIASMLKET----GKA 314

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF G AG    +IR+ LLEN  +  ++ LPT +F+   +   +         
Sbjct: 315 AVVLPDNVLFEGGAG---EKIRKKLLENCDVHTVLRLPTGIFYAQGVKANVVFFD---AR 368

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY-----VSRENGKFSRMLD 469
            + GK+Q       +    N+    K R + ++  ++ +  Y       R   +  +   
Sbjct: 369 PKDGKIQ-TKGVWFYDLRTNKHFTLKTRTLKEEDLKEFITCYNPENRHERTEAERFKYFS 427

Query: 470 YRTF 473
           Y   
Sbjct: 428 YDEL 431


>gi|307288976|ref|ZP_07568944.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306500067|gb|EFM69416.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
          Length = 343

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 151/356 (42%), Gaps = 40/356 (11%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +F TP  V  +   ++         +      +++DPT G+G  + +  N++  
Sbjct: 1   AGKKAGEFYTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLMLNVRNYLT- 53

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                  P  +  HGQEL   T+ +    +++  ++++       N++ G TL+KD  T 
Sbjct: 54  ------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTLNKDWPTD 102

Query: 290 KRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           + + +   + NPP+   W  D   ++         R+G  L   S     FL+H    L+
Sbjct: 103 EPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLK 157

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T +
Sbjct: 158 ET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTV 210

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R+  + ++ 
Sbjct: 211 IVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAERKGVEKYAH 263

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +  +         +  P  +    ++  +  +      +K+         ++L+ +
Sbjct: 264 LATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQHVLEKELLEAI 319


>gi|90425136|ref|YP_533506.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18]
 gi|90107150|gb|ABD89187.1| N-6 DNA methylase [Rhodopseudomonas palustris BisB18]
          Length = 489

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 91/461 (19%), Positives = 158/461 (34%), Gaps = 72/461 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +W     L        + + +   T L  L   LE T         +    
Sbjct: 2   TTTTDIVAKLWSLCHVLRD--DGVTYNEYVTELTFLLFL-KMLEETGK------ESRLPK 52

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                +  K  G    +  +  L  LG                   K       F+    
Sbjct: 53  GYRWAALAKREGLDQLDYYKRLLLDLGK---------------PEVKDGLVRAIFTDAQT 97

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL K   L  +  +   ++          +  +YE L+ +  S+   GA  + TPR ++ 
Sbjct: 98  RLRKPTNLKALTSSIDQLDWFSAREE--GLGTLYEGLLEKNASDKKSGAGQYFTPRPLID 155

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--------P 237
               L+           P +  T+ DP  GT GF+  A  ++ D                
Sbjct: 156 CIVRLM----------KPHVGETVQDPAAGTAGFIVAADRYIKDRTDDLYKLPEQQVFFQ 205

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                +G EL P+TH +C+  +L+  +E          ++   TLS D     +    L+
Sbjct: 206 RHHAFNGAELVPDTHRLCMMNLLLHGIEG--------GVELADTLSPDGERLSKADLILT 257

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K +        +                S+  + F+ H+   L+     GGRAA
Sbjct: 258 NPPFGTK-KGGGRPTRSDFSITAD---------TSNKQLAFVEHVVRALK----AGGRAA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF    G    ++R WL++   +  I+ LPT +F+   + T +      KT++
Sbjct: 304 VVVPDNVLFEDNTG---RDLRTWLMDLCSLHTILRLPTGIFYAQGVKTNVLFFQRGKTDK 360

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
              K   +   DL  ++   G K R +      +    Y S
Sbjct: 361 ANTKT--VWVYDLRANMPAFG-KTRPLTAADFAEFEKAYGS 398


>gi|58583086|ref|YP_202102.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58427680|gb|AAW76717.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 514

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 103/566 (18%), Positives = 190/566 (33%), Gaps = 77/566 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  L   +E  +      +     + 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +  N     L  LG ++     +  IA+   +A+             R
Sbjct: 58  SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++          + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +      + +  I+ G++L          +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L      GGRA
Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLTP----GGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   +EIRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             R       AT ++    N     KR        +   + Y +  NG  S   D    G
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPNFGKRTPFGPTHLKPFEEAYGTDPNG-ASPRTDAGEQG 424

Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 R     R   L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553
             G  +  +++     E   L+V + 
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509


>gi|323526112|ref|YP_004228265.1| adenine-specific DNA-methyltransferase [Burkholderia sp. CCGE1001]
 gi|323383114|gb|ADX55205.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Burkholderia sp. CCGE1001]
          Length = 480

 Score =  206 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 89/468 (19%), Positives = 168/468 (35%), Gaps = 76/468 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            +     +   +W     L  D   + ++   +     L+                    
Sbjct: 1   MSTITNDIVAKLWNLCNVLRDDGVTYHEYVTELTYLLFLKM------------------A 42

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDF 120
             +  +                 Y    L S      LE+Y  +        +I     F
Sbjct: 43  KETGTEDRL-----------PEGYRWDDLESKAAPERLEAYKVMLIHLGTHGSIITKEIF 91

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++  + ++K   L  +      I+ +        + ++YE L+ +  +E   GA  + TP
Sbjct: 92  AAARSFIDKPATLTALITAIDAIDWYSAKTE--GLGDLYEGLLEKNANEKKSGAGQYFTP 149

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------SHH 234
           R ++    +L+           P +  T+ DP  GTGGFL  A +++             
Sbjct: 150 RVLIDSIVSLM----------KPKLGETIQDPAAGTGGFLIAANHYIRKHNDLEALSEAA 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                L  HG E+    H + +  +++  L+SD        I+ G +LS +     +   
Sbjct: 200 YKKYRLQFHGMEIVQAAHRLGLMNLMLHDLDSDETG----GIRYGDSLSSEGQQLPKADL 255

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFG K +        +                S+  + FL H+   L+     GG
Sbjct: 256 IITNPPFGTK-KGGGLPTRDDF-----------TFPTSNKQLAFLQHIYRALKP----GG 299

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G   ++IRR L++   +  I+ LPT +F+   + T +   +  K
Sbjct: 300 RAAVVLPDNVLFESNVG---ADIRRDLMDKCYLHTILRLPTGIFYAQGVKTNVLFFTRGK 356

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           T+  +G    +   DL  ++   G KR  +  +   +    + S  +G
Sbjct: 357 TD--KGNTTGLWVYDLRANMPQFG-KRTPLTREHFAEFEAAFGSAPDG 401


>gi|120601905|ref|YP_966305.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
 gi|120562134|gb|ABM27878.1| N-6 DNA methylase [Desulfovibrio vulgaris DP4]
          Length = 495

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 83/492 (16%), Positives = 166/492 (33%), Gaps = 76/492 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTD-FGKVI--LP-FTLLRRLECALEPTRSAVREKYLAF 62
           ++  +   +W     L         +G  +  L     L+  +                 
Sbjct: 2   TSQEIVARVWSFCHVLR---DAGVSYGDYLEQLTYLIFLKMAD----------------- 41

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDF 120
                    + +  G      SE +  +L           YI +  +    K +     F
Sbjct: 42  ---EYANPPYNRDIG----IPSELNWPSLKKQRGAELEAQYIRTLRELGKQKGMLGQI-F 93

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +++   +L ++                 V  +IYE L+ +   +   GA  + TP
Sbjct: 94  TKAQNKIQDPAMLSRVIDMIDKESWAQMGAS--VKGDIYEGLLEKNAEDTKSGAGQYFTP 151

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +           P   +T+ DP CGTGGFL  A + + D          +
Sbjct: 152 RPLIKAIVDCM----------HPEPGKTISDPACGTGGFLLAAYDFILDRYKGQLDKAQV 201

Query: 241 V------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G E+ P T  +C+  +L+  +      D    I     L           Y
Sbjct: 202 AYLKEGAFTGNEIVPNTRRLCLMNLLLHGI---GSIDGEPPIHPDDALLS--TPSSTVDY 256

Query: 295 CLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            L+NPPFGKK       D  ++E ++    R    +    +  + F+ H+ + L+     
Sbjct: 257 VLTNPPFGKKSTMTVTNDDGKQEKEDFVYNRQDFWVT-TGNKQLNFVQHIRSMLKST--- 312

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+AA+V+  + LF G    G   +R+ L++   +  I+ LPT +F+   +   +    N
Sbjct: 313 -GKAAMVVPDNVLFEGG---GGETVRKELMKTTNLHTILRLPTGIFYAHGVKANVIFFDN 368

Query: 413 RKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-- 468
           ++  +      +   +    + +  +   KR+ +  D     ++ Y S    + +     
Sbjct: 369 KEASKKPWTKDIWFYD----YRTNIHHTLKRKPLTYDDLLPFVECYQSTNRDELAHTWSE 424

Query: 469 -DYRTFGYRRIK 479
                  +R+  
Sbjct: 425 SSNPEGRFRKYT 436


>gi|213612905|ref|ZP_03370731.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647548|ref|ZP_03377601.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 465

 Score =  206 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 84/486 (17%), Positives = 163/486 (33%), Gaps = 94/486 (19%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   L   +WK  ++L         +   +     L+                      +
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMC------------------KET 43

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSS 122
             + +          Y    Y    L S   +  L+ Y   +    ++ K + +   F +
Sbjct: 44  GQEAD----------YLPEGYRWDDLKSRIDQEQLQFYRKMLVHLGEDKKKLVQAV-FHN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               + +   + ++  N   ++ +            ++YE L+++  +E   GA  + TP
Sbjct: 93  VCTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------- 233
           R ++     LL           P     + DP  GT GFL +A  +V    +        
Sbjct: 153 RPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202

Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G EL P T  + +   L+  +E +     +  I+ G+TL  D     + 
Sbjct: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQA 260

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
               +NPPFG     +                   +   S+  + F+ H+   L      
Sbjct: 261 DIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP---- 302

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGRAA+V+  + LF         EIRR L++   +  I+ LPT +F+   + T +   + 
Sbjct: 303 GGRAAVVVPDNVLF----DRVGLEIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTK 358

Query: 413 R------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------R 459
                  + ++    V + +     T++   G KR    +   +    +Y         R
Sbjct: 359 GTVANPTQDKDCTDDVWVYDLR---TNMPRFG-KRTPFTEQYLQPFETVYGEDPHGLSPR 414

Query: 460 ENGKFS 465
             G++S
Sbjct: 415 AEGEWS 420


>gi|309811650|ref|ZP_07705429.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
 gi|308434451|gb|EFP58304.1| N-6 DNA Methylase [Dermacoccus sp. Ellin185]
          Length = 500

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 109/548 (19%), Positives = 197/548 (35%), Gaps = 66/548 (12%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +A  L + +W   + L  D     ++ + +     L+  +      R+    K      
Sbjct: 2   TTARQLVDKLWSYCDVLRDDGVGVIEYTEQLTYLLFLKMAD-----ERAKRPLKAERIIP 56

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                +  V+  G    N  E   + +            +   +   + +     F    
Sbjct: 57  EEYSWDRLVQATG----NDLELEYTRI------------LNGLARE-EGVIGTI-FRKAQ 98

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            R+     L ++  +  G E    T  D    + YE L+ +  S+   GA  + TPR ++
Sbjct: 99  NRVTDPAKLRRLVVDLIGKENWSQTGTDIN-GDAYEGLLAKGASDKGSGAGQYFTPRALI 157

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VADCGSHHKIPPIL 240
                        +    PG+   + DP CGTGGFL  A  H    V +   + +     
Sbjct: 158 QAI----------VDVVDPGVDDRVTDPACGTGGFLLVAHEHASANVNEMTPNQRHNLQH 207

Query: 241 VP-HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              HG EL   T  +    +L+  + S     L   I    +LS D  TG+R+   LSNP
Sbjct: 208 SFAHGVELVDGTARLAAMNLLLHGMGSSNGDSL---IHVRDSLSAD--TGERWSVVLSNP 262

Query: 300 PFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG+K        + +E ++         +   S+  + F+ H+   L       GRAA+
Sbjct: 263 PFGRKSSVTMMGADGRESRDDREIERQDFVATTSNKQLNFVQHIMTIL----ETNGRAAV 318

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF G A  GE+ IRR LL +  +  ++ LPT +F+   I   +     +     
Sbjct: 319 VLPDNVLFEGGA--GET-IRRKLLNDYDLHTMLRLPTGIFYAQGIKANVLFFDRKMARPG 375

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SRENGKFSRMLDY--- 470
           R   Q +   DL T+ ++   K+  +        +D Y      +R+  +  +   Y   
Sbjct: 376 RPWTQKLWVYDLRTN-KHFTLKQNPLTRADLDDFVDNYRVGERENRKESERWKAFTYDEI 434

Query: 471 --RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             R      I  LR   +  +        +  +I     + L +  +  +   + +Q+  
Sbjct: 435 VARDKANLDITWLRDESLEDLASLPSPDVIAREIVEDLTAALAE--FEAVATALEEQLGH 492

Query: 529 YGWAESFV 536
               ++  
Sbjct: 493 THAGDTTA 500


>gi|75766307|pdb|2AR0|A Chain A, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
 gi|75766308|pdb|2AR0|B Chain B, Crystal Structure Of Type I Restriction Enzyme Ecoki M
           Protein (Ec 2.1.1.72) (M.Ecoki)
          Length = 541

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 165/490 (33%), Gaps = 97/490 (19%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLA 61
           + +   L   +WK  ++L        +   +  L     L+                   
Sbjct: 2   SLNNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLK------------------X 41

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDF 118
              +  + E          Y    Y    L S   +  L+ Y   +    ++ K + +  
Sbjct: 42  CKETGQEAE----------YLPEGYRWDDLKSRIGQEQLQFYRKXLVHLGEDDKKLVQAV 91

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F +    + +   +  +  N   ++ +            + YE L+++  +E   GA  
Sbjct: 92  -FHNVSTTITEPKQITALVSNXDSLDWYNGAHGKSRDDFGDXYEGLLQKNANETKSGAGQ 150

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           + TPR ++     LL           P     + DP  GT GFL +A  +V    +    
Sbjct: 151 YFTPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDD 200

Query: 234 -----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          G EL P T  + +   L+  +E +     +  I+ G+TL  D   
Sbjct: 201 LDGDTQDFQIHRAFIGLELVPGTRRLALXNCLLHDIEGNLDHGGA--IRLGNTLGSDGEN 258

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             + H   +NPPFG     +                   +   S+  + F  H+   L  
Sbjct: 259 LPKAHIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFXQHIIETLHP 304

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGRAA+V+  + LF G  G   ++IRR L +   +  I+ LPT +F+   + T + 
Sbjct: 305 ----GGRAAVVVPDNVLFEGGKG---TDIRRDLXDKCHLHTILRLPTGIFYAQGVKTNVL 357

Query: 409 ILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---- 458
             +        + +     V + +     T+  + G KR    D+  +    +Y      
Sbjct: 358 FFTKGTVANPNQDKNCTDDVWVYDLR---TNXPSFG-KRTPFTDEHLQPFERVYGEDPHG 413

Query: 459 ---RENGKFS 465
              R  G++S
Sbjct: 414 LSPRTEGEWS 423


>gi|295401703|ref|ZP_06811670.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976323|gb|EFG51934.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 493

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/563 (16%), Positives = 192/563 (34%), Gaps = 99/563 (17%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +   +W     L  D   +  +   +     L+                          
Sbjct: 5   EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               +K  G  +    +Y   +L   +    + + +  +         + +   ++   +
Sbjct: 39  ---MMKETGQEYIIPEKYRWDSLVEKDGIELKEHYQQLLLDLGKEENELLKQI-YTDATS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            + +   L KI ++ + ++ +        + ++YE L+ +  SEV  GA  + TPR ++ 
Sbjct: 95  NIREPKNLEKIIQSINNLDWYNAKQE--GLGDLYEGLLEKNASEVKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237
           +   L+          +P      +DP  GT GF+  A  HV +             +  
Sbjct: 153 VIVELV----------NPQPGERCHDPAAGTFGFMIAADRHVREQTDDYFDLSQEEIEFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + +   L+  +  +        I  G TLS    + K +   L+
Sbjct: 203 KYKAFSGVELVRDTHRLAIMNALLHDIHGE--------ILLGDTLSSLGESLKNYDVILT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K   ++                      S+  + FL H+   L+       RAA
Sbjct: 255 NPPFGTKKGGERATRTD------------FTFTTSNKQLNFLQHIYRALKPNGKA--RAA 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  KT+ 
Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKTDV 357

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------------RENGKF 464
              K   +   DL T++ + G KR  +  +     +  Y +                 + 
Sbjct: 358 GNTK--EVWVYDLRTNMPSFG-KRNPLTKEHFEGFIKAYKAEDRRKVKDERWNVFTREEI 414

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           ++  D    G     +       +      +   E  +   +L+    +  +  LK + Q
Sbjct: 415 AKKGDSLDIG----LIADESLSVYENLPDPIDSAEEVVEKLELAISLFNEVIAELKAVEQ 470

Query: 525 QIYPYGWAESFVKESIKSNEAKT 547
                  ++  +K +  S   K 
Sbjct: 471 PNSYQTTSKEVLKVAETSEVLKK 493


>gi|282918215|ref|ZP_06325956.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317912|gb|EFB48280.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 318

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 143/359 (39%), Gaps = 44/359 (12%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L              
Sbjct: 1   GEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVGKEAK------ 46

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
               +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  F  
Sbjct: 47  ----VYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDA 97

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L+      G
Sbjct: 98  VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 148

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E   K+S     + 
Sbjct: 204 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQE 259

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                  +  P R     ++     L+      K      +     +   ++++     
Sbjct: 260 IADNDYNLNIP-RYVDAFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 317


>gi|241762635|ref|ZP_04760707.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372773|gb|EER62485.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 487

 Score =  205 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 160/467 (34%), Gaps = 78/467 (16%)

Query: 6   GSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
            +   +   +W     L  D   + ++   +     L+ LE   E  + A          
Sbjct: 2   STTTDIVAKLWSLCNVLRDDGVTYNEYVTELTYLLFLKMLE---ETEKEARL-------P 51

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                    K  G    +  +  L  LG    ++ L S I               F    
Sbjct: 52  EEWRWSLLAKREGLDQLDYYKAMLLELGKA--KDKLVSAI---------------FIDAQ 94

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            RL K   L  +  N   ++          + N+YE L+ +  S+   GA  + TPR ++
Sbjct: 95  TRLRKPTNLKALTSNIDQLDWFSAREE--GLGNLYEGLLEKNASDKKSGAGQYFTPRPLI 152

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKI 236
                L+           P     + DP  GT GFL  A  ++ D               
Sbjct: 153 DCIVRLM----------RPQAGEVIQDPAAGTAGFLVAADRYIKDHTDDLYTLTKEQASF 202

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P+TH + +  +L+  +E        +NI    TLS D     + +  L
Sbjct: 203 QRHNAFCGAELVPDTHRLSMMNLLLHGIEG-----GVENI---DTLSPDGEALPKANLIL 254

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG K +        +                S+  + F+ H+   L      GGRA
Sbjct: 255 TNPPFGTK-KGGGRPTRSDFSITAD---------TSNKQLAFVEHIVRALSP----GGRA 300

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V+  + LF    G     +R WL++   +  I+ LPT +F+   + T +      K++
Sbjct: 301 AVVIPDNVLFEDNTG---RRLRTWLMDLCDMHTILRLPTGIFYAQGVKTNVLFFQRGKSD 357

Query: 417 ERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +   K V   +   +  ++   G K R +           Y +  NG
Sbjct: 358 KGNTKAVWFYD---MRANMPAFG-KTRPLTVADFADFEKAYGAEANG 400


>gi|282919573|ref|ZP_06327308.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317383|gb|EFB47757.1| type I restriction enzyme M protein [Staphylococcus aureus subsp.
           aureus C427]
          Length = 318

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 144/359 (40%), Gaps = 44/359 (12%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L              
Sbjct: 1   GEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLLRVG---------- 42

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  F  
Sbjct: 43  KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGNTFDA 97

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L+      G
Sbjct: 98  VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 148

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 149 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 203

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  ++   K+S     + 
Sbjct: 204 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKKTIDKYSYSATLQE 259

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                  +  P R     ++     L+      K      +     +   ++++     
Sbjct: 260 IADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 317


>gi|323477547|gb|ADX82785.1| type 1 restriction modification enzyme, subunit m [Sulfolobus
           islandicus HVE10/4]
          Length = 586

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/487 (17%), Positives = 179/487 (36%), Gaps = 64/487 (13%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----RSAVRE 57
           E   S   L   + + A+ +        +   +L F   + +    E       +     
Sbjct: 86  ESELSKGDLFTVLKQGADLIRLGLD---YRS-LLVFLFYKAISDKYEDEVNQIIKDEGLS 141

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT-RNNLESYIASFSDNAKAIFE 116
           K  A+  +N   + + +  G         + + +   N      ++ +  F+        
Sbjct: 142 KKEAYIVANSKFKMYDENTGEL------LTWNEITKKNDYLVEFQNALIKFATLNPETIS 195

Query: 117 DFDFSSTIARLEKAGL-------LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                + + +L  + L       L +I + F  ++          + + Y +++ +F   
Sbjct: 196 KDLMIALLNKLGISNLTSEHKAKLDQIKRLFDKLDFSNVNYD--AIGDAYMYILAQFAPT 253

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +   +  TP +V+ L   L+           P     + DP  G+G  L +A  ++ +
Sbjct: 254 KGKE-GEVYTPHEVIKLLIRLI----------DPEPGSDILDPAMGSGAMLIEAYKYIKE 302

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K        GQE  P+  A+     ++  +E++           G +L K  F+ 
Sbjct: 303 KNGGVK------LFGQEYNPDMAAIAKLNFILHGIENNLVEVQI-----GDSLRKLKFSE 351

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +  Y ++NPP+ +    ++              F  G    +     ++  +    
Sbjct: 352 NSQFQVDYVVANPPWNQDGYGEESIGNDISLRKI---FKYGFTPNNTADWAWVQLMLYYA 408

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +       +  +VL    L        E  IR  ++  DLIEAI+ LP  LF+ T ++  
Sbjct: 409 KK------KVGVVLDQGALSREGK---ERTIRERIVNEDLIEAIILLPEKLFYNTQVSGI 459

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFS 465
           + IL+  K +ER+GK+  I+ATDL+       +K   ++D+  +QI++ Y   +    FS
Sbjct: 460 IMILNKEKEKERKGKILFIDATDLYIKHPEV-RKLNKLDDEHIQQIVETYREFKTVLSFS 518

Query: 466 RMLDYRT 472
           R++D   
Sbjct: 519 RVVDIEE 525


>gi|188577915|ref|YP_001914844.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522367|gb|ACD60312.1| type I restriction enzyme EcoKI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 514

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 102/566 (18%), Positives = 191/566 (33%), Gaps = 77/566 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  L   +E  +      +     + 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +  N     L  LG ++     +  IA+   +A+             R
Sbjct: 58  SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++          + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +      + +  I+ G++L          +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L+     GGR+
Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLKP----GGRS 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   ++IRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGVG---TDIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             R       AT ++    N     KR        +     Y S  NG  S   D    G
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPNFGKRTPFGPTHLKPFEQAYGSDPNG-ASPRTDAGEQG 424

Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 R     R   L +S++ D   +   ++  +   L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPSPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553
             G  +  +++     E   L+V + 
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509


>gi|138894434|ref|YP_001124887.1| Type I restriction enzyme StySPI M protein [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265947|gb|ABO66142.1| Type I restriction enzyme StySPI M protein [Geobacillus
           thermodenitrificans NG80-2]
          Length = 493

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/559 (16%), Positives = 190/559 (33%), Gaps = 91/559 (16%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +   +W     L  D   +  +   +     L+                          
Sbjct: 5   EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               +K  G  +    +Y   +L   +    + + +  +         + +   ++   +
Sbjct: 39  ---MMKETGQEYIIPEKYRWDSLVEKDGIELKEHYQQLLLDLGKEENELLKQI-YTDATS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            + +   L KI ++ + ++ +        + ++YE L+ +  SEV  GA  + TPR ++ 
Sbjct: 95  NIREPKNLEKIIQSINNLDWYNAKQE--GLGDLYEGLLEKNASEVKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237
           +   L+          +P      +DP  GT GF+  A  HV +             +  
Sbjct: 153 VIVELV----------NPQPGERCHDPAAGTFGFMIAADRHVREQTDDYFDLSQEEIEFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + V   L+  +  +        I  G TLS    + K +   L+
Sbjct: 203 KYKAFSGVELVRDTHRLAVMNALLHDIHGE--------ILLGDTLSSLGESLKNYDVILT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K   ++                      S+  + FL H+   L+       RAA
Sbjct: 255 NPPFGTKKGGERATRTD------------FTFTTSNKQLNFLQHIYRALKPNGKA--RAA 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +++  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +  KT+ 
Sbjct: 301 VIVPDNVLFEGGVG---ADIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGKTDV 357

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRTF 473
              K   +   DL T++ + G KR  +  +     +  Y +    +   +   +      
Sbjct: 358 GNTK--EVWVYDLRTNMPSFG-KRNPLTKEHFEGFIKAYTAEDRRKVKDERWNVFTREEI 414

Query: 474 GYRR-----IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                      +       +      +   E  +   +L+    +  +  LK + Q    
Sbjct: 415 AKNGDSLDIGLIADESLSVYENLPDPIDSAEEAVEKLELAISLLNEVIAELKAVEQPNSY 474

Query: 529 YGWAESFVKESIKSNEAKT 547
              ++  +K +  S   K 
Sbjct: 475 QATSKEILKVAETSEVLKK 493


>gi|92112219|ref|YP_572147.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043]
 gi|91795309|gb|ABE57448.1| N-6 DNA methylase [Chromohalobacter salexigens DSM 3043]
          Length = 495

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/463 (20%), Positives = 167/463 (36%), Gaps = 67/463 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           +A +LAN +W     L  D     +G  +  L     L+      +P       +     
Sbjct: 2   NAQTLANKVWNFCHTLRDDGVG--YGDYLEQLTYLIFLKMAHEYSQPPY-----RRDTGI 54

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            +     S V+  G          L TLG               S     IF        
Sbjct: 55  PAGYGWPSLVRRTGAELEAHYLDLLRTLGQQ-------------SGTLGQIFTKAQ---- 97

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++    L ++       +     +   V  +IYE L+ +   +   GA  + TPR +
Sbjct: 98  -NKIQDPAKLARVIHMIDAEKWAM--LDADVKGDIYESLLEKNAEDTKSGAGQYFTPRAL 154

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHKIP 237
           +    A +           P   +T+ DP+ GTGGF   A + + +           +  
Sbjct: 155 IQAMVACV----------QPQPGKTIADPSAGTGGFFLAAYDWITEHHGARMDREQKQFL 204

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                HG E+   T  +C+  + +  +      D   NI     L        R+ Y L+
Sbjct: 205 KHHAFHGNEIVANTRRLCLMNLFLHNI---GEIDDQPNIAPTDALIGP--APARYDYVLA 259

Query: 298 NPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           NPPFG+K        E E +  +    R        S+  + F+ H+   L+      G+
Sbjct: 260 NPPFGRKSSMTVTNEEGEQEKEDFVYNRQDFWAT-TSNKQLNFVQHIRTMLKE----NGQ 314

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-- 413
           AA+V+  + LF G A  GE+ +RR LL    +  I+ LPT +F+   +   +    N+  
Sbjct: 315 AAVVVPDNVLFEGGA--GET-VRRKLLTTTELHTILRLPTGIFYANGVKANVLFFDNKPG 371

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           + E     + + +    + +  +   KR+ +  +  ++ +D Y
Sbjct: 372 RAEPWTKDIWIYD----YRTNVHHTLKRKPLRLEHLQEFIDCY 410


>gi|56416309|ref|YP_153384.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197365232|ref|YP_002144869.1| DNA methylase M [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130566|gb|AAV80072.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096709|emb|CAR62332.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 528

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 164/488 (33%), Gaps = 98/488 (20%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+                     
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC------------------K 41

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDF 120
            +  + +          Y    Y    L S   +  L+ Y   +    ++ K + +   F
Sbjct: 42  ETGQEAD----------YLPEGYRWDDLKSRIGQEQLQFYRKMLVHLGEDKKKLVQAV-F 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +    + +   + ++  N   ++ +            ++YE L+++  +E   GA  + 
Sbjct: 91  HNVSTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++     LL           P     + DP  GT GFL +A  +V    +      
Sbjct: 151 TPRPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLD 200

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G EL P T  + +   L+  +E +     +  I+ G+TL  D     
Sbjct: 201 GDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLP 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +     +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 259 QADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQLCFMQHIIETLRP-- 302

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+V+  + LF         EIRR L++   +  I+ LPT +F+   + T +   
Sbjct: 303 --GGRAAVVVPDNVLF----DRVGLEIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFF 356

Query: 411 SNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------ 458
           +        + ++    V + +     T++   G KR    +   +    +Y        
Sbjct: 357 TKGTVANPTQDKDCTDDVWVYDLR---TNMPRFG-KRTPFTEQYLQPFETVYGEDPHGLS 412

Query: 459 -RENGKFS 465
            R  G++S
Sbjct: 413 PRAEGEWS 420


>gi|166711006|ref|ZP_02242213.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 514

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 103/566 (18%), Positives = 189/566 (33%), Gaps = 77/566 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  L   +E  +      +     + 
Sbjct: 2   THNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +  N     L  LG ++     +  IA+   +A+             R
Sbjct: 58  SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++          + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDELYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +      + +  I+ G++L          +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L      GGRA
Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLTP----GGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   +EIRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGSAA 365

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             R       AT ++    N     KR        +     Y +  NG  S   D    G
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEQAYGTDPNG-ASPRTDAGEQG 424

Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 R     R   L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553
             G  +  +++     E   L+V + 
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509


>gi|84624925|ref|YP_452297.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84368865|dbj|BAE70023.1| type I restriction enzyme StySPI M protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 514

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 104/566 (18%), Positives = 189/566 (33%), Gaps = 77/566 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W   + L       ++   +    LL  L   +E  +      +     + 
Sbjct: 2   TQNDIVQKLWNLCDVLRD--DGINYSDYVTELVLL--LFVKMEYEQVQNNPNFEHKLPAG 57

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                    +G +  N     L  LG ++     +  IA+   +A+             R
Sbjct: 58  SRWPDLNGKSGLNLLNHYRQMLLDLGKSS-----DPMIAAIYADAQ------------TR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L++   L  +     G++          + ++YE L+++  +E   GA  + TPR ++  
Sbjct: 101 LKEPRHLETLVTALDGLDWFSARQD--GLGDLYEGLLQKNANETKSGAGQYFTPRALIDS 158

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------SHHKI 236
               +           P +   + DP  GT GFL  A  ++                   
Sbjct: 159 IIHCI----------KPQLGDVIQDPAAGTAGFLIAADAYIKAQHDALYGPDVTAKKRSF 208

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  G EL P T  + +   L+  +      + +  I+ G++L          +  L
Sbjct: 209 QREKAFVGMELVPGTRRLALMNCLLHGM----HGEGAGPIRLGNSLGTAGRDLPPANIIL 264

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPFG              K G          K S+  + FL H+   L      GGRA
Sbjct: 265 SNPPFGT------------AKGGGGPTRDDLTYKTSNKQLAFLQHIYRGLTP----GGRA 308

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF    G   +EIRR L++   +  ++ LPT +F+   + T +         
Sbjct: 309 AVVLPDNVLFEAGLG---TEIRRDLMDKCTLHTLLRLPTGIFYAQGVKTNVLFFQKGTAA 365

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             R       AT ++    N     KR        +     Y S  NG  S   D    G
Sbjct: 366 NPRQDTGCTQATWVYDLRSNMPSFGKRTPFGPTHLKPFEQAYGSDPNG-ASPRTDAGEQG 424

Query: 475 -----YRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
                 R     R   L +S++ D   +   ++      L+    +   + L+ +   + 
Sbjct: 425 RFRCFTRAQIAERGDSLDISWLKDADSVDA-DSLPAPEVLAAEAMAELSEALRELDALMQ 483

Query: 528 PYGWAESFVKESIKSNEAKTLKVKAS 553
             G  +  +++     E   L+V + 
Sbjct: 484 ALGAGDEALEQKRLLAEVMGLEVTSG 509


>gi|319788901|ref|YP_004090216.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
 gi|315450768|gb|ADU24330.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Ruminococcus albus 7]
          Length = 476

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/538 (17%), Positives = 178/538 (33%), Gaps = 88/538 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+   C    T  A+ E+Y   
Sbjct: 2   NNQEIVAKLWNLCNVLRDDGITYQQYVTELTYIL---FLKM--CKETDTEKAIPEEY--- 53

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +  +   G       +  L  LG                   + I     +  
Sbjct: 54  -----RWDKLLSKQGIELKKFYKELLEHLGENCQGR------------VREI-----YQG 91

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +++   L KI       + +        + N+YE L+ +  +E   GA  + TPR 
Sbjct: 92  AQTNIDEPKNLEKIITTIDQFDWYSAKEE--GLGNLYEGLLEKNATEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234
           ++++ T L+          +P       DP CGT GF+  A ++V +             
Sbjct: 150 LINVMTRLI----------APKAGERCNDPACGTFGFMIAADHYVKEQTDDLFDLSVDEQ 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G EL  +TH + +   ++  +           I  G TLS      K F  
Sbjct: 200 EFQRTQAFSGCELVHDTHRLALMNAMLHDISGP--------IYLGDTLSNYGKQMKGFDV 251

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   ++   +                  S+  + FL H+   L    +   
Sbjct: 252 VLTNPPFGTKKGGERATRDD------------LTFPTSNKQLNFLQHIYRSLNQSGHA-- 297

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF   A     +IRR L++   +  I+ LPT +F+   + T +   +   
Sbjct: 298 RAAVVLPDNVLF---ADGDGEKIRRDLMKKCNLHTILRLPTGIFYAQGVKTNVLFFTRGT 354

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            ++   K   +   DL + + + G K   + +    + ++ Y +      S   +  +  
Sbjct: 355 ADKGNTK--EVWIYDLRSEMPSFG-KTNPLKESHFDEFVECYHA---EDISARQETWSEE 408

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
               +  R    S+                +  +        ++L+ +  +      A
Sbjct: 409 NPNGRWRR---YSYEDILERDKTSLDISWIKSANTSDDYTLTELLETIKTKSENIASA 463


>gi|186684991|ref|YP_001868187.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186467443|gb|ACC83244.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 489

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 95/469 (20%), Positives = 154/469 (32%), Gaps = 92/469 (19%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
            +   +WK  + L  D             T L+      E T     +     G      
Sbjct: 6   DIVQKLWKLCDVLRDD-----------GVTYLQY---VTELTYLLFLKMAQETGAEKQLP 51

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--------IASFSDNAKAIFEDFDFS 121
           E               Y    L +      L  Y            S   +AIF +   S
Sbjct: 52  EG--------------YRWGNLVNKGETEQLTFYRSLLLMLGSEKSSQRVQAIFVNAQTS 97

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             I R     +L K+  +   ++   +        ++YE L+++   E   GA  + TPR
Sbjct: 98  LKIPR-----ILKKLVTSIDELDWFSEHRD--EFGDLYEGLLQKNADEKKSGAGQYFTPR 150

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HH 234
            ++    AL+           P     + DP  GTGGFL     ++              
Sbjct: 151 PLIDCMVALI----------KPQPGELIQDPAAGTGGFLIAGDRYIRQYHDPFEWTEAQQ 200

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G EL  + H + +  M++  +E             G TLS       +   
Sbjct: 201 SFQQYQAFYGMELVQDAHRLMLMNMMLHGIEGAVD--------LGDTLSSQGQRLAKADV 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K      + +          F       S+  + FL H+   L+      G
Sbjct: 253 ILTNPPFGTKKGGGLPSRDD---------FTY---STSNKQLAFLQHIYRSLKPE----G 296

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G     IR  L+    +  I+ LPT +F+   + T +       
Sbjct: 297 RAAVVLPDNVLFEDGQG---KSIRADLMNKCNLHTILRLPTGIFYAQGVKTNVLFFQRGT 353

Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           TE+   K V   +   + T++ + G KR  +  +   +    Y    NG
Sbjct: 354 TEKGNTKAVWFYD---MRTNMPSFG-KRFPLTREHFAEFEQCYGDDPNG 398


>gi|164688286|ref|ZP_02212314.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM
           16795]
 gi|164602699|gb|EDQ96164.1| hypothetical protein CLOBAR_01931 [Clostridium bartlettii DSM
           16795]
          Length = 317

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 141/342 (41%), Gaps = 35/342 (10%)

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           +        +YDP CG+GG    ++  V +   +      +  +GQE  P T  +    M
Sbjct: 3   EMIEPFKGYVYDPACGSGGMFVQSLKFVEEHSGNA---FDISVYGQESNPTTWKLAKMNM 59

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            IR +E++         +   T  +DL    +  + L+NPPF +        ++      
Sbjct: 60  AIRGIENNLGS------KNADTFHEDLHKNLKADFILANPPFNQSDWGQPLLLD------ 107

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              R+  G P   + +  ++ H+ +KL       G+A +VL++  L      S E +IR+
Sbjct: 108 -DPRWKWGTPPAGNANYGWIEHMLDKLSQK----GKAGVVLANGSL--SSNTSNEGKIRK 160

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +L NDL++ IVALP  LF+ T I   +W  +  K  + +G+   I+A  +   +     
Sbjct: 161 TILNNDLVDCIVALPDKLFYTTGIPVCIWFFNRDK--KHKGQTLFIDARKMGDMVNR--- 215

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARL 498
           + R ++D+  ++I D Y+S +  +    +     G+ ++  +       +IL       +
Sbjct: 216 RLRELSDEDIKKIADTYISWQKEEGYEDV----KGFCKVANMDEIKENDYILTPGRYVGI 271

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           E            +     + K + +Q       E  +++ +
Sbjct: 272 ED---VEDDGEPFEEKMERLTKTLSEQFARSRELEDEIRKQL 310


>gi|159026886|emb|CAO89137.1| hsdM [Microcystis aeruginosa PCC 7806]
          Length = 495

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 161/474 (33%), Gaps = 64/474 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           + AS+ + +W     L  D     +G  +   T L  L          + ++Y       
Sbjct: 2   NTASIVSKVWSFCNTLRDDGVS--YGDYLEQLTYLLFL---------KMADEYAK----- 45

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA---KAIFEDFDFSST 123
                + +  G  F     Y   +L S     +LE++           K +     F+  
Sbjct: 46  ---PPYNRKIGIPF----AYDWQSLRSKR-GADLEAHYLGILRELGQKKGLLGQI-FTKA 96

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +++    L KI             +   V  +IYE L+ +   +   GA  + TPR +
Sbjct: 97  QNKIQDPAKLLKIITMIDEENWVM--METDVKGDIYEGLLEKNAEDTKSGAGQYFTPRPL 154

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPI 239
           +      L           P  + T+ DP CGTGGF   A N +           +    
Sbjct: 155 IWSMVECL----------RPQPMATIADPACGTGGFFLAAYNFLVKNYPLDREQKEFLKK 204

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              HG E+   T  + +  M +  +      D    I     L     +     Y L+NP
Sbjct: 205 STFHGNEIVANTRRLALMNMFLHNIG--DINDEQCFIASTDALIAP--SPFSVDYVLANP 260

Query: 300 PFGKKWEKDKDAVEKE--HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           PFGKK        + E   ++    R        S+  + F+ H+ + L+      G+AA
Sbjct: 261 PFGKKSSLTFTNEDGEQDREDLTYNRQDFWAT-TSNKQLNFVQHIRSMLKSR----GQAA 315

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF G AG     +R+ LL    +  I+ LPT +F++  +   +    N+   +
Sbjct: 316 VVVPDNVLFEGGAG---ETVRKQLLSTTDLHTILRLPTGVFYKQGVKANVIFFDNKPAAK 372

Query: 418 RRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLD 469
                    A   +    N     K+  +     +  +  Y  +   + S    
Sbjct: 373 DPW----TKAIWFYDFRTNIHFTLKKNPLKPADLQDFITCYHPQNRHQRSETYS 422


>gi|304383190|ref|ZP_07365663.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella marshii DSM 16973]
 gi|304335661|gb|EFM01918.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella marshii DSM 16973]
          Length = 473

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 173/529 (32%), Gaps = 85/529 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57
           MT    +  +L   +W  A  L G      +   I  L     L+      +     + E
Sbjct: 1   MTINISTEQALTKKVWNLATTLAGAGVA--YTDYITQLTYLLFLKM-----DAENEELFE 53

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           +  +         + +++ G       E +L  L     ++NL   I             
Sbjct: 54  E-GSSIPEGYRWRNLIELDGLDLTEQYEKTLKILSE---QDNLIGTI------------- 96

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F+     ++K   L K+       +     +   V   IYE ++ + G +   GA  +
Sbjct: 97  --FTKAQNEIDKPVYLKKVISMIDEEQWL--VMDGDVKGAIYEGILEKNGQDKKSGAGQY 152

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++      +           P +  T+ DP CGTGGFL  A + +          
Sbjct: 153 FTPRPLIQAMVDCI----------KPKIGETVCDPACGTGGFLLAAYDCMKQQSQDKDKR 202

Query: 238 ---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   HG +  P    +    + +  + +D        I    +L K+         
Sbjct: 203 EFLNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IACEDSLEKE--PDTLVDV 255

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG +     D    +                 +  + FL H+   L+     GG
Sbjct: 256 ILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GG 300

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF G AG     IR+ LL +  +  I+ LPT +F+   +   +   +  +
Sbjct: 301 RAAVVLPDNVLFEGGAG---ETIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFTKGQ 357

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             +    +   +    + +          +        +  Y +    +       R   
Sbjct: 358 PTK---DIWFYD----YRTDVKHTLATNKLQRHHLDDFVACYTANPRVETYNEDTARDGR 410

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +R+ +V   L            +   DITW K     + F LD L   +
Sbjct: 411 WRKYEVEDIL---------ARDKTSLDITWIKAGGEEEQFTLDELMTNI 450


>gi|269976584|ref|ZP_06183569.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris
           28-1]
 gi|269935385|gb|EEZ91934.1| type I restriction enzyme StySPI M protein [Mobiluncus mulieris
           28-1]
          Length = 469

 Score =  204 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/544 (20%), Positives = 184/544 (33%), Gaps = 90/544 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
               +   +WK  + L  D   +  +      IL    L+  +     T   + E+Y   
Sbjct: 2   KNQEIVAKLWKLCDVLRDDGITYHQYVTELTYIL---FLKMAKET--GTEDGIPEQY--- 53

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +   + +G          L  LG    R  ++   A  S N            
Sbjct: 54  -----RWDVLRQKSGIELKRYYRDLLQYLGEEA-RGRIQEIYAGASTNI----------- 96

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                ++   L KI K+   ++          + N+YE L+ +  +E   GA  + TPR 
Sbjct: 97  -----DEPKNLEKIIKSIDALDWFTAREE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHH 234
           ++ +   L            P       DP CGT GF+  A ++V +             
Sbjct: 150 LIDVMVRL----------TKPQPGELCNDPACGTFGFMIAAFDYVREHTDKFFDLNQDEA 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G EL  +TH + +   ++  +E+         I  G TLS      K F  
Sbjct: 200 HFEIQKAFTGVELVHDTHRLALMNAMLHSIEAP--------ITLGDTLSPLGKHLKNFDV 251

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   ++   +                  S+  + FL H+   L+     GG
Sbjct: 252 VLTNPPFGTKKGGERATRDD------------LTFPTSNKQLNFLQHIYRSLKS----GG 295

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF   A      IR+  ++   +  I+ LPT +F+   + T +      K
Sbjct: 296 RAAVVLPDNVLF---ADGDGKRIRQDFMDKCNVHTILRLPTGIFYAQGVKTNVLFFQRGK 352

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
           T++   K   +   DL T++ + G KR  +  +        Y + EN +     D R   
Sbjct: 353 TDKGNTK--RVWYYDLRTNMPSFG-KRTPLTREHFTDFETAYEA-ENREAVN--DERWSS 406

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           Y R            LD   + +    I W    P  Q+     L      +      + 
Sbjct: 407 YSR---EEIATKEDTLDLGLMKQETETIDWNNYDPAEQASEAADLLEEASDLLRSLAKDL 463

Query: 535 FVKE 538
            + +
Sbjct: 464 TLAK 467


>gi|209526221|ref|ZP_03274751.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209493318|gb|EDZ93643.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 485

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 160/475 (33%), Gaps = 90/475 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRL------ECALEPTRS 53
           M+    +   +   +W     L  D   + ++   +     L+ L      +C  +  R 
Sbjct: 1   MSTSNVTR-DIVAKLWNLCHILRDDGITYNEYVTELTYLLFLKMLAETGREDCLPQEYRW 59

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
           +  +                      FY      L         + +   I         
Sbjct: 60  SALDSREGLEQLE-------------FYRQLLLDLGN--QKKVADPVILAI--------- 95

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                 F+    RL K   L  +      ++          + N+YE L+ +  +E   G
Sbjct: 96  ------FTDAQTRLRKPTNLKSLTDAIDRLDWFSAREE--GLGNLYEGLLEKNAAEKKSG 147

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  + TPR ++     L+           P     + DP  GTGGFL  A  +V +    
Sbjct: 148 AGQYFTPRPLIDCIVRLV----------QPQAGEVIQDPAAGTGGFLVAADQYVKNQTDD 197

Query: 234 --------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +        G EL P+TH +C+  +++  +ES            G +LS D
Sbjct: 198 LYTLTQEQGRFQRNEAYRGLELVPDTHRLCLMNLMLHGIESVVM--------CGDSLSPD 249

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             +  +    L+NPPFG K    +              F     + S+  + F+ H+   
Sbjct: 250 GESLGKADVILTNPPFGTKKGGGRPTRSD---------FSV-TAETSNKQLAFVEHIYRA 299

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+     GGRAA+VL  + LF    G    ++R+ L++   +  I+ LPT +F+   + T
Sbjct: 300 LKP----GGRAAVVLPDNVLFEDNTG---RKLRQQLMDLCDLHTILRLPTGIFYAQGVKT 352

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVS 458
            +   +  KT+    K     A  ++    N     K R++      +    +  
Sbjct: 353 NVLFFTRGKTDRGNTK-----AVWVYDLRANMISFGKTRLLTVADFAEFEAAFGD 402


>gi|254414483|ref|ZP_05028249.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178713|gb|EDX73711.1| N-6 DNA Methylase superfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 396

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 28/262 (10%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 ++DP CG GG    +   +A           +  +GQE    T+ +C   + IR
Sbjct: 3   EPYQGRVFDPCCGLGGMFVQSEKFIAAHQGRID---DISIYGQESNETTYKLCRMNLAIR 59

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            ++    +   +      +   D     +  + ++NPPF       +          + G
Sbjct: 60  WIDGSNIKWNPEG-----SFLNDAHKDLKADFVIANPPFNDSDWGGE-------LLRKDG 107

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+  G+P + + +  ++ H    L       G A  VLS+  L       GE EIR+ L+
Sbjct: 108 RWRYGVPPVGNANFAWVQHFLYHLAPT----GAAGFVLSNGSL--SLNTGGEGEIRQALV 161

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSN----RKTEERRGKVQLINATDLWTSIRNEG 438
           E DL++ IV LPT LF+ T I   LW LS      K   R+G+V  I+A++L   +    
Sbjct: 162 EADLVDCIVMLPTQLFYNTGIPACLWFLSRYKNGNKNRNRQGEVLFIDASELGYMVNR-- 219

Query: 439 KKRRIINDDQRRQILDIYVSRE 460
            + R   ++   +I   Y + +
Sbjct: 220 -RNRAFTEEDIGKIAGTYHTWK 240


>gi|291167082|gb|EFE29128.1| type I restriction-modification system, M subunit [Filifactor
           alocis ATCC 35896]
          Length = 503

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 175/468 (37%), Gaps = 63/468 (13%)

Query: 9   ASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRL-ECALEPTRSAVREKYLAFG 63
             +   +W     L  D   +  +      IL    L+ + E  +E T       Y    
Sbjct: 4   QEIVQKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMMKEKDIEDTIEKNIVGYKDLK 60

Query: 64  GSNID-----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
             N D      E    +        S  +L +L     +   E  I  F ++ +   +  
Sbjct: 61  KKNEDGTITKNEQQEFLEKKKVAEYSWNTLVSLSGIELKKYYERIIHLFGEHCRGHIKSI 120

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             ++    +E+   L KI +  + ++ +  ++ +    ++YE L+ +  +E   GA  + 
Sbjct: 121 YHNARTN-IEEPKNLEKIIRTMNNLDWY--SIDEEGFGDLYEGLLEKNANEKKSGAGQYF 177

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231
           TPR ++ + T L+           P +     DP CGT GF+  A  +V +         
Sbjct: 178 TPRVLIDVMTRLI----------QPKVGERCNDPACGTFGFMIAAKRYVNEHHDEFSLSK 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             +         G EL  +TH + +   +I  +ES+        I    TLS    +   
Sbjct: 228 EEYDFQKEKAFTGCELVSDTHRLALMNAMIHGIESE--------ILCADTLSNIGKSMSG 279

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPFG K   ++   +                  S+  + FL H+   L++   
Sbjct: 280 YDVVLTNPPFGTKKGGERATRDD------------FTFPTSNKQLNFLQHIYRSLKVDGK 327

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              RAA+VL  + LF   A    ++IR  L++   +  I+ LPT +F+   + T +   +
Sbjct: 328 A--RAAVVLPDNVLF---ADGDGAKIREDLMDKCNLNMILRLPTGIFYAQGVKTNVLFFT 382

Query: 412 NR-KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
              + +E   +V   +   + T++ + G K   +  +        Y++
Sbjct: 383 RGTREKENTKEVWFYD---MRTNMPSFG-KTTPLKKEHFVDFEKAYLA 426


>gi|240146118|ref|ZP_04744719.1| type I restriction-modification system, M subunit [Roseburia
           intestinalis L1-82]
 gi|257201771|gb|EEV00056.1| type I restriction-modification system, M subunit [Roseburia
           intestinalis L1-82]
          Length = 477

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 110/549 (20%), Positives = 195/549 (35%), Gaps = 93/549 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + + +W     L  D   +  +      IL    L+  +     T   + EKY   
Sbjct: 2   TTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMAKET--GTEEQIPEKYHWD 56

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                      K     FYN     LS LG   T               + I     +  
Sbjct: 57  KLKAKSGVELKK-----FYNE---LLSELGDNGTGR------------IREI-----YQG 91

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +++   L KI      ++ +        + N+YE L+ +  +E   GA  + TPR 
Sbjct: 92  AATNIDEPKNLEKIIATIDSLDWYSAREE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------- 233
           ++ + T L+           P +     DP CGT GF+  A  +VA+   +         
Sbjct: 150 LIDVMTKLM----------KPQVGERCNDPACGTFGFMIAAHQYVAERTDNFFDIADADL 199

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K        G EL  +TH + +   ++  +        +  I  G TLS    +   + 
Sbjct: 200 AKFEKEEAFTGCELVHDTHRLALMNAMLHDI--------AAPITLGDTLSNIGKSMHDYD 251

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             L+NPPFG K   ++   +          F       S+  + FL H+   L+      
Sbjct: 252 LVLTNPPFGTKKGGERATRDD---------FTY---PTSNKQLNFLQHIYRSLKNNGKA- 298

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAA+VL  + LF   A     +IR  LL+   +  I+ LPT +F+   + T ++  +  
Sbjct: 299 -RAAVVLPDNVLF---ADGDGEKIRLDLLDKCNLHTILRLPTGIFYAQGVKTNVFFFTRG 354

Query: 414 KTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           KT++   K V + +  +    + + G K   +  +     +  Y    +G  S+  +  +
Sbjct: 355 KTDKGNTKEVWIYDLRN---DMPSFG-KTNPLKPEHFDDFIACY---ADGDLSKRKETYS 407

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRK-LSPLHQSFWLDILKPMMQQIYPYGW 531
                 +     R   I D     +   DITW K  S        ++L  + ++      
Sbjct: 408 EENPNGRW----RKFSIQDILARDKTSLDITWMKTESDTDNYTLAELLDQIKEKSQNIAK 463

Query: 532 AESFVKESI 540
           A S +++ I
Sbjct: 464 AVSELEQLI 472


>gi|229195091|ref|ZP_04321866.1| N-6 DNA methylase [Bacillus cereus m1293]
 gi|228588320|gb|EEK46363.1| N-6 DNA methylase [Bacillus cereus m1293]
          Length = 484

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 180/485 (37%), Gaps = 83/485 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+ +            EK  + 
Sbjct: 2   NNQEIVQKLWNLCNVLRDDGITYQQYLTELTYIL---FLKMMN-----------EKGNSS 47

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFD 119
               +++E  +           EY   +L S      + + +  +     +  +I     
Sbjct: 48  VEDRVNIEHVI---------PEEYRWESLVSREGIELKEHYQRLLLELGSSDNSILRQIY 98

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             ++ + + +   L KI K+   ++ +        + ++YE L+ +  SE   GA  + T
Sbjct: 99  ADASTS-ISEPKNLEKIIKSIDNLDWYNAEKE--GLGDLYEGLLEKNASETKSGAGQYFT 155

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++ +   L+           P +     DP  GT GF+  A  ++ +          
Sbjct: 156 PRVLIDVMVKLV----------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDP 205

Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL  +TH + +   L+  +E           +QG TLS +    K 
Sbjct: 206 EQAEFQKTEAFTGMELVKDTHRLALMNALLHGIEGRL--------EQGDTLSSNGKWIKN 257

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K   ++   +                + S+  + FL  + N L+   N
Sbjct: 258 FDVILTNPPFGTKKGGERATRDD------------LTFETSNKQLNFLQLIYNALKDDGN 305

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              RAA+VL  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +
Sbjct: 306 A--RAAVVLPDNVLFEGGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 360

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE----NGKFSRM 467
             KT++   K   +   DL T++ + G KR  + +    + +  Y + +      +   +
Sbjct: 361 REKTDKNSTK--EVWVYDLRTNMPSFG-KRTPLTEANFEEFMKAYHAEKRSNVEDERWNV 417

Query: 468 LDYRT 472
                
Sbjct: 418 FTREE 422


>gi|94272596|ref|ZP_01292153.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
 gi|93450073|gb|EAT01432.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
          Length = 480

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 100/478 (20%), Positives = 162/478 (33%), Gaps = 71/478 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHT-DFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64
             L   +W  A  L         +G  I        L+      +  R  + ++  A   
Sbjct: 4   EQLVAKVWNYAHVLR---DQGISYGDYIEQITYLLFLKM-----DQERQELLDEASAI-P 54

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                       G        ++L  L        L   I               F  + 
Sbjct: 55  PQWSWGQLANKDGDELELQYRHTLENL---AREEGLIGTI---------------FRKSQ 96

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +L     L ++       E     +   V   IYE L+ R  SEV  GA  + TPR V+
Sbjct: 97  NKLSDPAKLKRVVSLI-DTEGPWIGLGVDVKGEIYEGLLERNASEVKSGAGQYFTPRPVI 155

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILV 241
                 +          +P +  ++ DP CGTGGFL  A +H+ +     +         
Sbjct: 156 ETIVKCV----------NPRIGESVCDPACGTGGFLLAAYDHMKNQSQDRERLRALRHTA 205

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G ++  E   +C   + +  L      +    ++Q   L+ D   G RF+  L+NPPF
Sbjct: 206 FSGLDIVDEVVRLCAMNLYLHGL-----GNGGSPVEQRDALAGD--NGHRFNVVLTNPPF 258

Query: 302 GKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           GKK       +  AV  E ++ E   F       S+    FL H+   L       GRA 
Sbjct: 259 GKKSSYKVVGEDGAVTSEREHYEREDFKFTT---SNKQFNFLQHIMTIL----EAHGRAG 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF     +GE  IR+ LLE      ++ LPT +++   +   +     R    
Sbjct: 312 VVLPDNVLFEAG-RAGEG-IRKRLLEGFNFHTLLRLPTGIWYSPGVKANVLFFDKRPASR 369

Query: 418 RRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +VQ      ++    N  K  K + +        +  Y  R+  +  R   Y+  
Sbjct: 370 ---EVQ-TRELWVYDLRTNIHKTLKTKRLTHADFDDFIHCYHQRKETERFRRFSYQEL 423


>gi|266619617|ref|ZP_06112552.1| type I restriction-modification system, M subunit [Clostridium
           hathewayi DSM 13479]
 gi|288868819|gb|EFD01118.1| type I restriction-modification system, M subunit [Clostridium
           hathewayi DSM 13479]
          Length = 471

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 157/464 (33%), Gaps = 83/464 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + + +W     L  D   +  +      IL    L+         +    E+    
Sbjct: 2   NTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------AKETGVEEQ--- 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +  V  +G          L+ LG   T               + I     +  
Sbjct: 49  IPEEYRWDCLVSKSGMELRRYYRELLNYLGEECTGR------------IQEI-----YQG 91

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +++   L KI      ++ +        + N+YE L+ +  +E   GA  + TPR 
Sbjct: 92  AATNIDEPKNLEKIITAIDKLDWYSAKEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHK 235
           ++ +   L+           P +     DP CGT GF+  A  +V +            +
Sbjct: 150 LIDVMVRLM----------KPQVGERCNDPACGTFGFMIAADKYVKEHNDFWGISADLAE 199

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL  ETH + +   ++  +E          I    TLS      K +   
Sbjct: 200 FQHKEAFTGCELVHETHRLALMNAMLHDIEG--------QIMLADTLSNAGKQLKGYDLV 251

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG +   ++   +              +   S+  + FL H+   L+       R
Sbjct: 252 LTNPPFGTEKGGERATRDD------------FVFSTSNKQLNFLQHIYRSLKPNGKA--R 297

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF   A      IR  L+E   +  ++ LPT +F+   + T +   +   T
Sbjct: 298 AAVVLPDNVLF---ADGDGERIRVDLMERCNLHTVLRLPTGIFYAQGVKTNVLFFTRGTT 354

Query: 416 EERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           ++   K V   +   L T++ + G K   +  +        Y +
Sbjct: 355 DKDNTKEVWFYD---LRTNMPSLG-KTNPLKTEHFADFEKAYEA 394


>gi|119357295|ref|YP_911939.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354644|gb|ABL65515.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 495

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 91/493 (18%), Positives = 170/493 (34%), Gaps = 75/493 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T + +S+ + +W     L        +G  +   T L  L                   
Sbjct: 1   MTNTPSSIVSKVWSFCHVLRDSGVS--YGDYLEQLTFLIFL------------------- 39

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +  E        +    SEY+   L +             ++   + + +       
Sbjct: 40  --KMADEYTRPPYNRTIDIPSEYTWPKLKAKRGAE----LEVLYARLLRDLGQKPGMLGQ 93

Query: 124 I-----ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           I      ++    +LYK+                 V   IYE L+ +   +   GA  + 
Sbjct: 94  IFLKAQNKIADPAMLYKVIDMIDKESWVMMGAD--VKGEIYEGLLEKNAEDTKSGAGQYF 151

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HH 234
           TPR ++ +    +           P   +T+ DP CGTGGF   A + +           
Sbjct: 152 TPRALIEIMVKCV----------RPEPRKTIGDPACGTGGFFLKAYDFITTRYKLDRDEK 201

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G E+ P T  +C+  M +  +          +      L  D   G R+ Y
Sbjct: 202 EFLKHRTFGGNEIVPGTRRLCLMNMFLHNIGELDGNVAVSS---TDALVAD--NGVRYDY 256

Query: 295 CLSNPPFGKKWEK--DKDAVEKEHKNGELGR--FGPGLPKISDGSMLFLMHLANKLELPP 350
            L+NPPFGKK       D  E+E ++    R  F       ++  + FL H+   L++  
Sbjct: 257 VLTNPPFGKKSSMTFTNDEEEQEKESLVYNRQDFWAIT---ANKQLNFLQHIHTILKVY- 312

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+AA+VL  + LF G AG     +R+ LLE   +  I+ LPT +F+   +   ++  
Sbjct: 313 ---GQAAVVLPDNVLFEGGAG---ELVRKKLLETTELHTILRLPTGIFYAQGVKANVFFF 366

Query: 411 S--NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGKFSR 466
                  +    +V   +    + +  +   K+  +     ++ ++ Y   +R   K + 
Sbjct: 367 DVMPADKDPWTREVWFYD----YRTNVHHTLKKSPLKASDLQEFVECYNPANRHKRKETW 422

Query: 467 MLDYRTFGYRRIK 479
             +     +R+  
Sbjct: 423 SQENPEGRWRKYT 435


>gi|313205416|ref|YP_004044073.1| site-specific DNA-methyltransferase (adenine-specific)
           [Paludibacter propionicigenes WB4]
 gi|312444732|gb|ADQ81088.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Paludibacter propionicigenes WB4]
          Length = 491

 Score =  202 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/535 (18%), Positives = 182/535 (34%), Gaps = 79/535 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           + +S+ + +W     L        +G  +  L     L+  +   +P  +          
Sbjct: 2   TTSSIVSKVWSFCNPLRDVGVG--YGDYLEQLTYLLFLKMADEYSKPPHNRKLN------ 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                                EY+  +L          +  + +   S   K I     F
Sbjct: 54  ------------------IPKEYNWESLTGVKGAELELHYATLLRELSTQ-KGILGQI-F 93

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + +  +++   +L KI       +     +   V  +IYE L+ +   +V  GA  + TP
Sbjct: 94  TKSQNKIQDPAMLAKIIDMIDSEQWL--VMGADVKGDIYEKLLEQNAQDVKSGAGQYFTP 151

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++      +           P  ++T+ DP CGTGGF   A +++       K     
Sbjct: 152 RPLIRAMVECI----------QPQPLKTIADPACGTGGFFLAAYDYLVANNKLDKDQNKF 201

Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G E+   T  + +  M +  +      +    I     L     +   + Y L
Sbjct: 202 LKLETFYGNEIVASTRRLALMNMFLHNIGDIDSDNF---ISPADALI--AASSTTYDYVL 256

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +NPPFGKK  +     E E +  +    R        S+  + F+ H+ + L+      G
Sbjct: 257 ANPPFGKKSSQTFTNEEGEQEKDDLTYNRQDFWAT-TSNKQLNFVQHIRSMLKTT----G 311

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            AA+V+  + LF G AG     +R+ LLE   +  I+ LPT +F+   +   +    N+ 
Sbjct: 312 MAAVVVPDNVLFEGGAG---ETVRKKLLETTDLHTILRLPTGIFYANGVKANVIFFDNKP 368

Query: 415 TEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
             +     +V + +    + +  +   K+  +N D  +  +  Y        +       
Sbjct: 369 ASKTPWTKEVWVYD----YRTNVHHTLKKNPLNIDVLKDFIACYNP------ANRFKRTE 418

Query: 473 FGYRRIKVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             Y            F  D+     +   DITW K   L     L   + +   I
Sbjct: 419 T-YNAETNPEGKWRKFSYDEIVARDKTSLDITWLKDKSLADLDNLPDPEDLATDI 472


>gi|94265469|ref|ZP_01289219.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
 gi|93454011|gb|EAT04352.1| Putative RNA methylase:N-6 DNA methylase [delta proteobacterium
           MLMS-1]
          Length = 480

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 162/480 (33%), Gaps = 69/480 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGGS 65
             L   +W  A  L        +G  I        L+      +  R  +  +  A    
Sbjct: 4   EQLVAKVWNYAHVLRDQGVS--YGDYIEQITYLLFLKM-----DQERQELLGEASAI-PP 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
                      G        ++L  L        L   I               F  +  
Sbjct: 56  QWSWGQLANKDGDELELQYRHTLENL---AREEGLIGTI---------------FRKSQN 97

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L     L ++       E     +   V   IYE L+ R  SEV  GA  + TPR V+ 
Sbjct: 98  KLSDPAKLKRVVSLI-DTEGPWIGLGVDVKGEIYEGLLERNASEVKSGAGQYFTPRPVIE 156

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILVP 242
                +          +P +  ++ DP CGTGGFL  A +H+ +     +          
Sbjct: 157 TIVKCV----------NPQIGESVCDPACGTGGFLLAAYDHMKNQSQDRERLRALRHTAF 206

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G ++  E   +C   + +  L      +    ++Q   L+ D   G RF+  L+NPPFG
Sbjct: 207 SGLDIVDEVVRLCAMNLYLHGL-----GNGGSPVEQRDALAGD--NGHRFNVVLTNPPFG 259

Query: 303 KKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           KK       +  AV  E ++ E   F       S+    FL H+   L       GRA +
Sbjct: 260 KKSSYKVVGEDGAVTSEREHYEREDFKFTT---SNKQFNFLQHIMTIL----EAHGRAGV 312

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF     +GE  IR+ LLE      ++ LPT +++   +   +     R     
Sbjct: 313 VLPDNVLFEAG-RAGEG-IRKRLLEGFNFHTLLRLPTGIWYSPGVKANVLFFDKRPASR- 369

Query: 419 RGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
             +VQ      ++    N  K  K + +        +  Y  R+  +  R   Y+    R
Sbjct: 370 --EVQ-TRELWVYDLRTNIHKTLKTKRLTHADFDDFIHCYHKRQETERFRRFSYQELAKR 426


>gi|302874006|ref|YP_003842639.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
 gi|307689745|ref|ZP_07632191.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
 gi|302576863|gb|ADL50875.1| Site-specific DNA-methyltransferase (adenine-specific) [Clostridium
           cellulovorans 743B]
          Length = 472

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 90/547 (16%), Positives = 180/547 (32%), Gaps = 93/547 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + + +W     L  D   +  +      IL    L+  +      +          
Sbjct: 2   NTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMAKETGAEDK---------- 48

Query: 63  GGSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                  +     +G    +FY                   +  +    +    I +   
Sbjct: 49  LPQGYKWDDLKTKSGIELKTFY-------------------KELLNHLGEETTGIVQQI- 88

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           +  +   +E+   L KI     G++ +        + N+YE L+ +  SE   GA  + T
Sbjct: 89  YQGSATNIEEPKNLEKIITTIDGLDWYSAKEE--GLGNLYEGLLEKNASEKKSGAGQYFT 146

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++ +   L+           P       DP  GT GF+  A +++ +   +      
Sbjct: 147 PRVLIDVMVKLI----------DPRPGEKCNDPAAGTFGFMIGADHYLKEKTDNYFDLDT 196

Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL  ETH + +   ++  +E         NI  G TL+       +
Sbjct: 197 DLAEFQRTKAFSGCELVHETHRLALMNAMLHGIEG--------NIILGDTLTNVGKQMNQ 248

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               LSNPPFG K   ++   +                  S+  + FL H+   L+    
Sbjct: 249 LDVVLSNPPFGTKKGGERATRDD------------LTYMTSNKQLNFLQHIYRSLKADNK 296

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              RAA+VL  + LF    G   ++IR  L++   +  I+ LPT +F+   + T +   +
Sbjct: 297 A--RAAVVLPDNVLFQEGDG---TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 351

Query: 412 NRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
             K ++   K V   +     T++ + G K   + +      +  Y +  + + +   + 
Sbjct: 352 RGKEDKGNTKEVWFYDLR---TNMPSFG-KTNPLKETHFEDFIKAYTA--DNREAVEDER 405

Query: 471 RTFGYRRIKVLRPLRMSF-ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                R     +   +   ++    +   E      + +    +   +    +M  I   
Sbjct: 406 WNKFTREQIKEKNDNLDLGLIKDDSILDYEDLPDPIESAEEAVAKLEEATDLLMSVIKEL 465

Query: 530 GWAESFV 536
              ES  
Sbjct: 466 RALESEE 472


>gi|154245044|ref|YP_001416002.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
 gi|154159129|gb|ABS66345.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
          Length = 486

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 152/469 (32%), Gaps = 78/469 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
            T S   +   +W     L        + + +   T L  L   LE T       +    
Sbjct: 1   MTSSTTDIVAKLWSLCHVLRD--DGVTYNEYVTELTFLLFL-KMLEETG------HEERL 51

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                     K  G    +  +  L  LG     + L   I               F+  
Sbjct: 52  PEGWRWGLLAKKEGMDQLDYYKAMLLALGKA--PDKLVGAI---------------FTDA 94

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +L K   L  +  +   ++          +  +YE L+ +  ++   GA  + TPR +
Sbjct: 95  QTKLRKPTNLKALTSSIDLLDWFSAREE--GLGTLYEGLLEKNAADKKSGAGQYFTPRPL 152

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235
           +     L+           P     + DP  GT GFL  A  ++ D              
Sbjct: 153 IDCIVRLM----------KPQPGEIVQDPAAGTAGFLVAADRYIKDRTDDLFELTEAQGF 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P+TH +C+  +L+  +E          ++   TLS D     + H  
Sbjct: 203 FQRNNAFVGAELVPDTHRLCLMNLLLHGIEG--------GVESMDTLSPDGEGLPKAHLI 254

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K    +              F       S+  + F+ H+   L      GGR
Sbjct: 255 LTNPPFGTKKGGGRPTRTD---------FSV-TADTSNKQLAFVEHIVRSLRP----GGR 300

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF    G     +R WL+E   +  I+ LPT +F+   + T +        
Sbjct: 301 AAVVVPDNVLFEDNTG---RRLRSWLMELCDLHTILRLPTGIFYAQGVKTNVLFFRRGTN 357

Query: 416 EERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENG 462
           ++       I A  ++    N     K R +           Y    NG
Sbjct: 358 DKAN-----IKAVWVYDMRANMPAFGKTRPLTIADFAAFEAAYGDDPNG 401


>gi|228472619|ref|ZP_04057379.1| type I restriction enzyme EcoKI M protein [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276032|gb|EEK14788.1| type I restriction enzyme EcoKI M protein [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 472

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 101/535 (18%), Positives = 179/535 (33%), Gaps = 89/535 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   +  +                 E T     +        
Sbjct: 2   NNQEIVAKLWALCNVLRDDGITYHQY---------------VTELTYILFLKMAKETNSE 46

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSS 122
               E+              Y   TL S +    +   E  +    +  +   ++    +
Sbjct: 47  GEIPEA--------------YRWDTLVSKDGIPLKKFYEELLEHLGEQCRGRIQEIYAGA 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +E+   L KI K    ++ +        + N+YE L+ +  +E   GA  + TPR 
Sbjct: 93  KSN-IEEPKNLEKIIKTIDALDWYSAKEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234
           ++ + T L            P       DP CGT GF+  A  ++ D             
Sbjct: 150 LIDVMTEL----------THPQAGERCNDPACGTFGFMIAADRYIKDQTDDLFSLSQEMQ 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G EL  ETH + +   ++  ++          IQ G TLS        +  
Sbjct: 200 EFQINEAFSGGELVHETHRLALMNAMLHDIKGP--------IQLGDTLSSLGKQMTGYDV 251

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   ++   +                  S+  + FL H+   L+     GG
Sbjct: 252 VLTNPPFGTKKGGERATRDD------------LTFPTSNKQLNFLQHIYRSLK----RGG 295

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF      GE  IR+ L+E   +  I+ LPT +F+   + T +       
Sbjct: 296 RAAVVLPDNVLFVDG--DGER-IRKDLMEKCNLHTILRLPTGIFYAQGVKTNVLFFERGL 352

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRMLDYRT 472
           ++  +G  Q +   DL +++ N G K   +  +   + +  Y    R   + +   +   
Sbjct: 353 SD--KGNTQEVWFYDLRSNMPNFG-KTNPLKREHFDEFVQCYQRDDRHKRQETYSEENPQ 409

Query: 473 FGYRRIKVLR---PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +RR          + S  L          DI   +L    +     I + + Q
Sbjct: 410 GRWRRYTYEEICARDKTSLDLSWIRQGEETEDIPLSELIATMEEKAAKITEAIAQ 464


>gi|323141887|ref|ZP_08076748.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067]
 gi|322413634|gb|EFY04492.1| N-6 DNA Methylase [Phascolarctobacterium sp. YIT 12067]
          Length = 470

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 162/478 (33%), Gaps = 92/478 (19%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+         +    E+    
Sbjct: 2   NTQEIVAKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------AKETGSEEN--- 48

Query: 63  GGSNIDLESFVKVAGY---SFYNTSEYSLSTLGSTNTRNNLESYI-ASFSDNAKAIFEDF 118
                  +  +   G     FY                 NL  Y+    +   + I    
Sbjct: 49  IPEGYRWDDLLARKGLELKGFY----------------KNLLDYLGERCTGRIQEI---- 88

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +      +++   L KI +    ++          + N+YE L+ +  +E   GA  + 
Sbjct: 89  -YKGAATNIDEPKNLEKIIRTIDELDWFSAKEE--GLGNLYEGLLEKNANEKKSGAGQYF 145

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----- 233
           TPR ++ + T L+          +P       DP CGT GF+  A N V +  +      
Sbjct: 146 TPRVLIDVMTRLV----------APKAGERCNDPACGTFGFMIAASNFVREQTNDFFDLD 195

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +        G EL  +TH + +   ++  +           I  G TLS      +
Sbjct: 196 EETAEFEYTQAFTGCELVHDTHRLALMNAMLHDI--------QSKIILGDTLSNVGKEMQ 247

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   L+NPPFG K   ++   +          F       S+  + FL H+   L+   
Sbjct: 248 GYDVVLTNPPFGTKKGGERATRDD---------FTY---PTSNKQLNFLQHIYRSLKADG 295

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
               RAA+VL  + LF   A      IR  L++   +  I+ LPT +F+   + T +   
Sbjct: 296 KA--RAAVVLPDNVLF---ADGDGERIRVDLMDKCNLHTILRLPTGIFYAQGVKTNVLFF 350

Query: 411 SNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           +  KT++   K V   +   L T++ + G K   +           Y + +  K +  
Sbjct: 351 TREKTDKDSTKAVWFYD---LRTNMPSFG-KTNPLKASDFAGFEAAYTAEDRSKVADE 404


>gi|268323783|emb|CBH37371.1| putative type I restriction enzyme, N-6 DNA methylase family
           [uncultured archaeon]
          Length = 452

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/469 (18%), Positives = 162/469 (34%), Gaps = 69/469 (14%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           MT       ++ + +W  A+ L  D     +G                        E+  
Sbjct: 1   MTNT----ETIISKVWSFADVLRDDGVG--YGDY---------------------LEQLT 33

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDF 118
                 +  E               Y+  ++ S         Y+    +   A  I    
Sbjct: 34  YLLFLKLADEYTKPPYNRKLPIPDGYNWESMLSKRGAELDSHYVKLLRELGKASGILGQI 93

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            F+ +  +++    LY++    +            +   IYE L+ +   +V  GA  + 
Sbjct: 94  -FTKSQNKIQDPAKLYRVIDMINNENWSLMGTD--LKGKIYEGLLEKNAEDVKSGAGQYF 150

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGS 232
           TPR ++      +           P   +T+ DP CGTGGF   + + +           
Sbjct: 151 TPRALIMAMVECI----------HPAPGKTICDPACGTGGFFLASYDFLCNPANYRLDKE 200

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +        G E+      +C+  M +  +      D    I    +L  D  +G R+
Sbjct: 201 QKEFLKDRTFSGNEIVASARRMCLMNMFLHNI---GEIDAESPISSADSLVSD--SGARY 255

Query: 293 HYCLSNPPFGKKWEKDK--DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            Y L+NPPFGKK       +  ++E +N    R        S+  + FL H+   L+   
Sbjct: 256 DYVLTNPPFGKKSSMTFTTEEGKQEKENLVYNRQDFWAT-TSNKQLNFLQHIHTLLKSD- 313

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G AA+VL  + LF G AG     +R+ +LE   +  I+ L T +F++  +   +   
Sbjct: 314 ---GHAAVVLPDNVLFEGGAG---ETVRKNMLETTNLHTILRLSTGIFYKQGVKANILFF 367

Query: 411 SNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            N+   +     +V + +    + +  +   K+  +  +  +  +  Y 
Sbjct: 368 DNKPASKEPWTKEVWIYD----FRTNVHFTLKKNPLKFEDMKDFIACYN 412


>gi|89891080|ref|ZP_01202588.1| type I restriction-modification enzyme, M subunit [Flavobacteria
           bacterium BBFL7]
 gi|89516724|gb|EAS19383.1| type I restriction-modification enzyme, M  subunit [Flavobacteria
           bacterium BBFL7]
          Length = 495

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 107/575 (18%), Positives = 188/575 (32%), Gaps = 97/575 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           SA  +AN +W     L  D   +  +      IL    L+     L   +      +   
Sbjct: 2   SADEIANKLWNLCNVLRDDGVTYHQYLNELTYIL---FLK-----LTEVKD-----FEEH 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF--SDNAKAIFEDFDF 120
             +      FV+       N +                   I+    S + K I     +
Sbjct: 49  IPAEYRWRGFVEEHDN---NEAFERYKK---------FLVSISGVTTSPSIKEI-----Y 91

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           ++    L K      + ++   ++ + +     VM +IYE L+ +   E   GA  + TP
Sbjct: 92  NNASTSLRKPVNFNTLVQSIEKLDWYEEN-DRDVMGDIYESLLEKNAGEKKSGAGQYFTP 150

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------S 232
           R ++++ T LL          +P +     DP  GT GF+  A  ++             
Sbjct: 151 RPLINIMTQLL----------APKLGERWNDPAAGTFGFMIAADEYLRSKYENYYALRDK 200

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K        G EL  + H + +    +  +ES+        I  G TL++       +
Sbjct: 201 DRKFQKEQAFSGVELVGDAHRLALMNARLHGMESE--------IILGDTLTEMGKNLNGY 252

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG K +  +     +                S+  + FL H+   L+     
Sbjct: 253 DGVLANPPFGTK-KGGEKPTRDDF-----------TFPTSNKQLNFLQHIYRSLKKDGKA 300

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             RAA+VL  + LF    G    +IRR L++   +  I+ LPT +F+   + T +   + 
Sbjct: 301 --RAAVVLPDNVLFEDGDGQ---KIRRDLMDKCDLHTILRLPTGIFYAAGVKTNVLFFTR 355

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            KTE+   K         +    N     KR           +  Y   +       +  
Sbjct: 356 GKTEKNNTK-----GIWFYDMRTNVPNYGKRTPFTRTAFADFVKAYTGGK------TIAD 404

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
               Y      RP        +     +E D  W  ++    +   D L   +       
Sbjct: 405 LEKNYDGSIANRPQDGHPEPVEGA---VENDSRWNYITREVIASKNDSLDLGLIADDSVS 461

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            AE    E ++       ++ A +  + A I   G
Sbjct: 462 KAEDLG-EPVEIATEALNELSAIQKQLKAMIKELG 495


>gi|126667032|ref|ZP_01738007.1| N-6 DNA methylase [Marinobacter sp. ELB17]
 gi|126628438|gb|EAZ99060.1| N-6 DNA methylase [Marinobacter sp. ELB17]
          Length = 498

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 161/463 (34%), Gaps = 73/463 (15%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           + + +W     L  D     +G  +  L     L+  +                      
Sbjct: 8   IISKVWSFCTTLRDDGVG--YGDYLEQLTYLIFLKMAD--------------------EY 45

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIA 125
               + +  G       +Y   TL +         Y+         K +     F+    
Sbjct: 46  AKPPYNRDVG----IPEQYRWHTLKTKKGAELEVLYVELLRALGTQKGMLGQI-FTKAQN 100

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +++    LY++       +         V  +IYE L+ +   +   GA  + TPR ++ 
Sbjct: 101 KIQDPAKLYRLIDMVDSTQWVIMGAD--VKGDIYEGLLEKNAEDTKSGAGQYFTPRALIR 158

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------PI 239
                L           P   +T+ DP CGTGGF   A + + D  ++            
Sbjct: 159 AMVDCL----------RPEPGKTIADPACGTGGFFLAAYDFLTDTQNYQLDKAQKSFIKH 208

Query: 240 LVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               G E+   T  +C+  M +  + E D    +S N      L     + + F Y L+N
Sbjct: 209 DTFFGNEIVANTRRMCLMNMFLHNIGEIDGDSLVSPN----DALV--AASPQSFDYVLAN 262

Query: 299 PPFGKKWEKDKDAVEKEHKNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           PPFGKK        E E +  +    R        S+  + F+ H+ + L+      G+A
Sbjct: 263 PPFGKKSSMSFTNEEGEQETDDLTYNRQDFWAT-TSNKQLNFVQHIRSMLKTT----GKA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-- 414
           A+V+  + LF G AG     IRR LL+N  +  I+ LPT +F+   +   +    N+   
Sbjct: 318 AVVVPDNVLFEGGAG---ETIRRKLLKNTDLHTILRLPTGIFYAHGVKANILFFDNQTAS 374

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
                 +V   +    + +  +   K++ +  +     +  Y 
Sbjct: 375 PSPWTKEVWFYD----YRTNVHHTLKKKPLRYEDMADFIACYN 413


>gi|332969661|gb|EGK08677.1| type I restriction-modification system DNA-methyltransferase
           [Desmospora sp. 8437]
          Length = 474

 Score =  200 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 160/483 (33%), Gaps = 87/483 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+ +       +     +  A 
Sbjct: 2   NTQEIVQKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMM-------KER---EEEAS 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +    + G   +      L+ LG+                  + I     + +
Sbjct: 49  IPEEYRWDRLTSLHGEELHQHYRRLLTDLGT-----------QGRDPLVQQI-----YRN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +++   L KI ++  G++ +        + N+YE L+ +  SE   GA  + TPR 
Sbjct: 93  ASTNIDEPKNLEKIIRSIDGLDWYSAREE--GLGNLYEGLLEKNASEKKSGAGQYFTPRP 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHH 234
           ++++   L+           P       DP  GT GF+  A +++ +             
Sbjct: 151 LINVMVKLI----------DPRPGEKCNDPAAGTFGFMIAADHYLKEKYDEYYDLEPEER 200

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G EL  ETH + +    +  +E          I  G TLS           
Sbjct: 201 TFQKYEAFTGCELVQETHRLALMNARLHGIEG--------KIHLGDTLSSLGKEMGDMDV 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   ++   +          F       ++  + FL H+   L+       
Sbjct: 253 ILTNPPFGTKRGGERPTRDD---------FTY---PSTNKQLNFLQHIYRALKANGKA-- 298

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G     IR  L++   +  I+ LPT +F+   + T +       
Sbjct: 299 RAAVVLPDNVLFQDGDG---KSIRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFERGT 355

Query: 415 TE-ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLD 469
           T+     +V   +   L T++ + G KR  + +      +  Y +    R   +      
Sbjct: 356 TDIGNTEEVWFYD---LRTNMPSFG-KRNPLTEAHFDGFIQAYTASDRSRVQDERWSRFT 411

Query: 470 YRT 472
              
Sbjct: 412 REE 414


>gi|325989583|ref|YP_004249282.1| putative type I restriction-modification system DNA methylase, HsdM
           [Mycoplasma suis KI3806]
 gi|323574668|emb|CBZ40321.1| probable type I restriction-modification system DNA methylase, HsdM
           [Mycoplasma suis]
          Length = 614

 Score =  200 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 105/596 (17%), Positives = 205/596 (34%), Gaps = 75/596 (12%)

Query: 8   AASLANFIWKNAEDLWGDF--KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + LA  +W    +L   F  K +++ K  L    L+ ++   + T   + ++     G 
Sbjct: 1   MSDLAKSLWNFCNELRVYFHLKQSEYYKPALGALFLKYMDVNYQKTLKILEKEMPIIEGV 60

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGS----------TNTRNNLESYIASFSDNAKAIF 115
            +  + +            E   S + S           N      S +    DNA  + 
Sbjct: 61  RVSPKKYDFEKKGVIMLPEEAQFSKIISLPEDVTLAKIKNIDGEEMSSLGEVLDNAMKLI 120

Query: 116 EDFD--FSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           E     F   +    +  +   L  + K F   ++  +      +  +YE+ +  F  E 
Sbjct: 121 ERESELFEGALFKEYKKIRDNTLRDLLKVFDREDVSDN---SDKLGEVYEYFLGHFSLEE 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 F TP+ +V++   +L                   DP CG+GG       ++ + 
Sbjct: 178 KGDEGVFFTPKSLVNMIVNIL-----------QPKGGKALDPFCGSGGMFVGIKKYM-ER 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +        V  G EL P    +C   + +  ++ +        I+Q +T   DL   +
Sbjct: 226 ETDSTCNQDFVFRGYELLPANVNICNMNLFMHNIQINSV------IKQCNTFENDLLDLE 279

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLAN 344
            +  Y LSNPPF  K    + A          GR    LP+ +     +   L + +  +
Sbjct: 280 GKCDYVLSNPPFCVKGVNIERAKRA-------GRIPFALPRGNNESFTNADYLCIQYFYS 332

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TN 402
            L      G             N  A +G+ EIR+ ++E   ++ I+ +    F    T 
Sbjct: 333 YLNDRGKAGFVMG--------KNSLASTGDKEIRKQIIETKHVDIIIGVADKFFQSGFTG 384

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR--IINDDQRRQILDIYVSRE 460
               LW  + +K EE+R K+  I+A++ ++ +++  K+             ++ +Y  + 
Sbjct: 385 -EVCLWFFNKQKIEEQRDKILFIDASNYFSQVKDNPKQNTWSYWQSKNLIAVVWLYRGQV 443

Query: 461 NG------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                   ++   LD     +    V  P   +++    G+          +LS   +  
Sbjct: 444 EKYQKLLEEYREALDKYAKEFN---VQIPESGNYLDAFKGVGEKLIVEGEEELSKADKKD 500

Query: 515 WLDILKPMMQQIYPYGWAESFVKE--SIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
              + + + ++   +  A S VKE   I+S   K +          A I      D
Sbjct: 501 KNRMKEELDKKWERFEEALSVVKEYDWIRSKFKKGIYRDVPGLCKAADIKEVMEMD 556


>gi|149200913|ref|ZP_01877888.1| type I restriction-modification system DNA methylase [Roseovarius
           sp. TM1035]
 gi|149145246|gb|EDM33272.1| type I restriction-modification system DNA methylase [Roseovarius
           sp. TM1035]
          Length = 700

 Score =  200 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 156/467 (33%), Gaps = 62/467 (13%)

Query: 15  IWKNAEDLW--GDFKHTDFGKVILPFTLLR----RLECALEPTRSAVREKYLAFGGSNID 68
           +WK A+DL         ++   I+    LR    R   AL    +   +         + 
Sbjct: 16  LWKMADDLRANSGLASNEYFMPIMGLLFLRQATNRYYAALSAIEAD--KAAGKMPDRPLV 73

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIAR 126
              F +         + Y +           L + + +  +  +  F            R
Sbjct: 74  DADFRRRRAMLLPEAARYDVILDMPK--GGQLGAALTAAMEEVEKHFPPLAGQLPKDYER 131

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            +   LL  + + F    L        V   IYE+ +  F  + +    +F TP  +V  
Sbjct: 132 FDD-DLLESMMRKFDTEALRNA--SGDVFGRIYEYFLAEFSKQGAHDNGEFFTPPSIVQT 188

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 ++DP CG+GG    + + + D G           +G E
Sbjct: 189 IVNVI-----------EPDHGIVFDPACGSGGMFVQSSHFIEDAGQDTMKRV--TFYGHE 235

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---TLSKDLFTG-KRFHYCLSNPPFG 302
               T  +    + +  L+          I+ G+   T  KD      +  + ++NPPF 
Sbjct: 236 KNETTAKLAQINLAVHGLQGT--------IRAGNDAITYYKDPHELVGKCDFVMANPPFN 287

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELPPNGGGRA 356
                         K     R   GLP      K+S+ + L++ +  + L    N  GRA
Sbjct: 288 VDE-------VDADKVKGDKRLPFGLPGVNKAKKVSNANYLWMSYFYSYL----NENGRA 336

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT- 415
            +V+SS       AG  E+ +R+ L+E   ++ ++ +  + F+   +   LW     K  
Sbjct: 337 GVVMSSQA---SSAGRDEAVVRQKLIETGAVDVMIDIRGNFFYTRTVPCQLWFFDRAKER 393

Query: 416 -EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             ER   V +++A + +  +                 I+ +Y    +
Sbjct: 394 DPERADHVLMLDARNNYRKVSRAIYDFAPEQQKNIAAIVWLYRGEAD 440


>gi|325973139|ref|YP_004250203.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
 gi|323651741|gb|ADX97823.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
          Length = 614

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 104/596 (17%), Positives = 204/596 (34%), Gaps = 75/596 (12%)

Query: 8   AASLANFIWKNAEDLWGDF--KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            + LA  +W    +L   F  K +++ K  L    L+ ++   + T   + ++     G 
Sbjct: 1   MSDLAKSLWNFCNELRVYFHLKQSEYYKPALGALFLKYMDVNYQKTLKILEKEMPIIEGV 60

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGS----------TNTRNNLESYIASFSDNAKAIF 115
            +  + +            E   S + S           N      S +    DNA  + 
Sbjct: 61  RVSPKKYDFEKKGVIMLPEEAQFSKIISLPEDVTLAKIKNIDGEEMSSLGEVLDNAMKLI 120

Query: 116 EDFD--FSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           E     F   +    +  +   L  + K F   ++  +      +  +YE+ +  F  E 
Sbjct: 121 ERESELFEGALFKEYKKIRDNTLRDLLKVFDREDVSDN---SDKLGEVYEYFLGHFSLEE 177

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 F TP+ +V++   +L                   DP CG+GG       ++ + 
Sbjct: 178 KGDEGVFFTPKSLVNMIVNIL-----------QPKGGKALDPFCGSGGMFVGIKKYM-ER 225

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +        V  G EL P    +C   + +  ++ +        I+Q +T   DL   +
Sbjct: 226 ETDSTCNQDFVFRGYELLPANVNICNMNLFMHNIQINSV------IKQCNTFENDLLDLE 279

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLMHLAN 344
            +  Y LSNPPF  K    + A          GR    LP+ +     +   L + +  +
Sbjct: 280 GKCDYVLSNPPFCVKGVNIERAKRA-------GRIPFALPRGNNESFTNADYLCIQYFYS 332

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TN 402
            L      G             N  A +G+ EIR+ ++E   ++ I+ +    F    T 
Sbjct: 333 YLNDRGKAGFVMG--------QNSLASTGDKEIRKQIIETKHVDIIIGVADKFFQSGFTG 384

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR--IINDDQRRQILDIYVSRE 460
               LW  + +K EE+R K+  I+A++ ++ +++  K+             ++ +Y  + 
Sbjct: 385 -EVCLWFFNKQKIEEQRDKILFIDASNYFSQVKDNPKQNTWSYWQSKNLIAVVWLYRGQV 443

Query: 461 NG------KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                   ++   LD     +    V  P   +++     +          +LS   +  
Sbjct: 444 EKYQKLLEEYREALDKYAKEFN---VQVPESGNYLDAFKEVGEKLIVEGEEELSKADKKD 500

Query: 515 WLDILKPMMQQIYPYGWAESFVKE--SIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
              + + + ++   +  A S VKE   I+S   K +          A I      D
Sbjct: 501 KNRMKEELDKKWERFEEALSVVKEYDWIRSKFKKGIYRDVPGLCKAADIKEVMEMD 556


>gi|225155294|ref|ZP_03723787.1| type I restriction modification system, methyltransferase subunit
           [Opitutaceae bacterium TAV2]
 gi|224803901|gb|EEG22131.1| type I restriction modification system, methyltransferase subunit
           [Opitutaceae bacterium TAV2]
          Length = 413

 Score =  200 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 162/467 (34%), Gaps = 72/467 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           +A+SL + +W     L        +G  +  L     L+                Y    
Sbjct: 2   TASSLVSKLWNYCNILRD--DGLSYGDYVEQLTYLLFLKM-------EHEKSLPPYNKKS 52

Query: 64  --GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
              +     + VK+ G         +L+ LG       L                   F 
Sbjct: 53  QIPAGFSWSALVKLDGDDLETHYRITLTELGKCGGMLGLI------------------FR 94

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               +++    L ++  +    E     +   V  + YE L+ +  ++V  GA  + TPR
Sbjct: 95  KAQNKIQDPAKLRRLIADLIDKETWTS-LEADVKGDAYEGLLEKNAADVKGGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL- 240
            ++     ++          +P   +T+ DP CGTGGFL  A +++A             
Sbjct: 154 ALIAAMVEVM----------APQPGQTICDPACGTGGFLLAAHDYLARPERKLDKEQKRF 203

Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 HG EL      +C   +++  +  D  + L   +     LS        +   L
Sbjct: 204 LKNGTLHGVELVDSVTRLCAMNLMLHGIGGDSDKTLP--VTTRDALSG---KHGEYDIVL 258

Query: 297 SNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +NPPFGKK       ++    KE        F       S+  + FL H+ + L+     
Sbjct: 259 ANPPFGKKSSVTIVNEEGESAKESLVINRDDFWA---STSNKQLNFLQHIFSILKQH--- 312

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRAA+VL  + LF G A  GE+ IRR LL+   +  ++ LPT +F+   +   +     
Sbjct: 313 -GRAAVVLPDNVLFEGGA--GET-IRRQLLQQADVHTLLRLPTGIFYAQGVKANVLFFDK 368

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYV 457
           +   ++R          ++    N+    K   +        +  Y 
Sbjct: 369 KPANDKRPW---TEKLWIYDLRTNQHFTLKENPLKPADLTDFIACYG 412


>gi|150388683|ref|YP_001318732.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
 gi|149948545|gb|ABR47073.1| N-6 DNA methylase [Alkaliphilus metalliredigens QYMF]
          Length = 472

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 168/464 (36%), Gaps = 82/464 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+        ++    +     
Sbjct: 2   NNQEIVAKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------SKETGTD---GQ 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
              +   +  +K  G          L+ LG   T               + I     +S 
Sbjct: 49  IPEDYRWDILIKKQGVELKRYYNELLNHLGEECTGR------------IREI-----YSG 91

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           + + +E+   L KI  +   ++ +        + N+YE L+ +  +E   GA  + TPR 
Sbjct: 92  SRSNIEEPKNLEKIITSIDALDWYSAKEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHH 234
           ++++ T L+          +P       DP CGT GF+  A  +V D             
Sbjct: 150 LINIMTQLI----------APQAGEKCNDPACGTFGFMIAADRYVKDHTDDLFDLSLKEQ 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G EL  +TH + +   ++  +E          I    TLS      K F  
Sbjct: 200 EFQKNKAFTGCELVHDTHRLALMNAMLHDIEG--------KILYADTLSNLGKAMKDFDV 251

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   ++   +                  S+  + FL H+   L+       
Sbjct: 252 VLTNPPFGTKKGGERTTRDD------------LTYPSSNKQLNFLQHIYRSLKTNGK--S 297

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF   A    + IR  L++   +  ++ LPT +F+   + T +   +  K
Sbjct: 298 RAAVVLPDNVLF---ADGDGASIRADLMDKCNLHTVLRLPTGIFYAQGVKTNVLFFTRGK 354

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           TE+   K   +   DL T++++ G K + + ++     +  Y S
Sbjct: 355 TEKNNTK--EVWVYDLRTNMQSFG-KTKALKEEHFEDFIKAYTS 395


>gi|281424445|ref|ZP_06255358.1| type I restriction-modification system, M subunit [Prevotella oris
           F0302]
 gi|281401431|gb|EFB32262.1| type I restriction-modification system, M subunit [Prevotella oris
           F0302]
          Length = 473

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 97/527 (18%), Positives = 174/527 (33%), Gaps = 81/527 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M     +  SL   +W  A  L G    +TD+   +     L+      +     + E+ 
Sbjct: 1   MATNISTEQSLTKKVWNLATTLSGQGIGYTDYVTQLTYLLFLKM-----DAENEKLFEET 55

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            +         + +++ G       E +L  L     ++NL   I               
Sbjct: 56  SSI-PEGYRWSNLIELDGLDLIEQYEKTLKILSE---QDNLIGTI--------------- 96

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+    +++K   L K+       +     +   V   IYE ++ + G +   GA  + T
Sbjct: 97  FTKAQNKIDKPVYLKKVISMIDEEQWL--VMDGDVKGAIYEGILEKNGQDKKSGAGQYFT 154

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-- 237
           PR ++      +           P +  T+ DP CGTGGFL  A + +            
Sbjct: 155 PRPLIQAIVDCV----------QPKIGETVCDPACGTGGFLLAAYDCMKQQSQDKDKREF 204

Query: 238 -PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 HG +  P    +    + +  + +D        I    +L K+          L
Sbjct: 205 LNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IACEDSLEKE--PDTLVDVIL 257

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG +     D    +                 +  + FL H+   L+     GGRA
Sbjct: 258 ANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHIMLMLK----AGGRA 302

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF G AG     IR+ LL +  +  I+ LPT +F+   +   +      +  
Sbjct: 303 AVVLPDNVLFEGGAG---ETIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFVKGQPT 359

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           +    +   +    + +          +        +  Y +    +  +    R   +R
Sbjct: 360 K---DIWFYD----YRTDVKHTLATNKLRRHHLDDFVASYTANPRVETYKEDTARDGRWR 412

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +  V          D     +   DITW K     + F LD L   +
Sbjct: 413 KYTVE---------DIIARDKTSLDITWIKAGGEEEQFTLDELMTNI 450


>gi|269838109|ref|YP_003320337.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
 gi|269787372|gb|ACZ39515.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
          Length = 507

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/557 (18%), Positives = 182/557 (32%), Gaps = 76/557 (13%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           T  A  +   +W     L        +G  +   T L  L+ A E T+        +   
Sbjct: 4   TNHAQQIVQRLWSYCNVLRD--DGLSYGDYVEQLTYLLFLKMAHEQTQEPW--NRPSPVP 59

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              D  S +   G        + L  L                      +     F    
Sbjct: 60  EGYDWPSLLARDGDELETHYRHLLEEL--------------GRQPGMLGLI----FHKAQ 101

Query: 125 ARLEKAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +++    L ++        +     +        YE L+ +   +V  GA  + TPR +
Sbjct: 102 NKIQDPAKLRRLIVDLIDREQWM--VLGTDAKGATYEGLLEKNARDVKGGAGQYFTPRPL 159

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP- 242
           +     ++           P    T+ DP CGTGGFL  A N + +   H          
Sbjct: 160 IQAIVDVM----------RPQPGETICDPACGTGGFLLAAHNSIVERYPHLDPEQRKHLK 209

Query: 243 ----HGQELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                G E+      +C   +L+  +   P   D+   ++ G +L  +      F   L+
Sbjct: 210 LHALRGVEIVDSVTRLCAMNLLLHGVGPGPAEADIEPPVRTGDSL--NSAPSDHFDVVLT 267

Query: 298 NPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           NPPFG+K       ++   E+E        F       S+  + F+ H+ + L++     
Sbjct: 268 NPPFGRKSSVLVVNEEGQQEREALTVVREDFWATT---SNKQLNFVQHVKSLLKIH---- 320

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF G A  GE+ IRR LL+   +  ++ LPT +F+   +   +     +
Sbjct: 321 GRAAVVVPDNVLFEGGA--GET-IRRKLLQECDVHTLLRLPTGIFYAQGVKANVLFFDRK 377

Query: 414 KTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
              E+    QL     ++    N+    K + +      + +  +            + R
Sbjct: 378 PPREQPWTSQL----WIYDLRTNKHFTLKTKPLQRSDLDEFVACFNP----------ENR 423

Query: 472 TFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                      P           L    ++  DI W K   L     L     +   I  
Sbjct: 424 HQRTPTWSEENPDGRWRAFSYDELIQRDKVNLDIFWLKDKSLEDGENLGDPDEIAADIVE 483

Query: 529 YGWAESFVKESIKSNEA 545
              A     E+I ++ A
Sbjct: 484 DLRAALEEFETILADLA 500


>gi|317486936|ref|ZP_07945746.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316921811|gb|EFV43087.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score =  199 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 162/465 (34%), Gaps = 86/465 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+         +    E   A 
Sbjct: 2   TTQEIVAKLWNLCNVLRDDGITYHQYVTELTYIL---FLKM-------AKETGTE---AA 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  ++    +G    +  +  L+ L    T               + I     +  
Sbjct: 49  IPETCRWDALAAKSGIELKHVYKQVLAELSENGTGR------------VREI-----YQG 91

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            ++ +++   L KI  + + ++ +        + N+YE L+ +  +E   GA  + TPR 
Sbjct: 92  AVSNIDEPKNLEKIISSINALDWYSAQEE--GLGNLYEGLLEKNANEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234
           ++ +   L+           P +     DP CGT GF+  A  ++ D             
Sbjct: 150 LIDVMVRLM----------KPQVGELCNDPACGTFGFMIAADRYLKDQTDDYFDLDEDQA 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G EL  +TH + +   ++  +E +        I    TLS      K +  
Sbjct: 200 AFQKQRAFTGCELVHDTHRLALMNAMLHGIEGE--------ILLADTLSTAGKAMKGYDL 251

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   ++   +          F       S+  + FL H+   L+     GG
Sbjct: 252 VLTNPPFGTKKGGERATRDD---------FAFAT---SNKQLNFLQHIYRSLK----RGG 295

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF   A      IR  L++   +  ++ LPT +F+   + T +   +  +
Sbjct: 296 RAAVVLPDNVLF---ADGDGGRIRADLMDKCTLHTVLRLPTGIFYAQGVKTNVLFFTRGQ 352

Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           ++    K V   +     T++ + G K   +  +        + +
Sbjct: 353 SDRGNTKEVWFYDLR---TNMPSFG-KTTPLKKEHFADFEAAFEA 393


>gi|301170025|emb|CBW29629.1| unnamed protein product [Haemophilus influenzae 10810]
          Length = 314

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 121/335 (36%), Gaps = 31/335 (9%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 +YDP  G+GGF       +     +      +  +GQE  P T  +    M IR
Sbjct: 3   EPYSGRVYDPAMGSGGFFVQTERFITAHQGNIN---NVSIYGQEFNPTTWKLAAMNMAIR 59

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            ++ D  +  +       + ++     K+  + ++NPPF                  +  
Sbjct: 60  GIDYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSESLADDP 106

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+  G P   + +  +L H+   L       G+ A++L++  +      + E EIR+ ++
Sbjct: 107 RWAYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--SSQTNNEGEIRKAII 160

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +           R
Sbjct: 161 NADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDRV---LR 215

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA-RLEAD 501
               D   +I D   + +    S   + +    +   +       F+L         E +
Sbjct: 216 DFTADDIAKIADTLHAWQT---SDGYEDQAAFCKSATLEEIKNNDFVLTPGRYVGTAEQE 272

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
                 +   Q+    + +   +        +  +
Sbjct: 273 DDGVPFAEKMQNLTALLKEQFAKSAELEAEIKKNL 307


>gi|229542894|ref|ZP_04431954.1| N-6 DNA methylase [Bacillus coagulans 36D1]
 gi|229327314|gb|EEN92989.1| N-6 DNA methylase [Bacillus coagulans 36D1]
          Length = 476

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/484 (18%), Positives = 167/484 (34%), Gaps = 90/484 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L        + + +  L     L+ +       +    ++  +  
Sbjct: 2   NNQEIVQKLWNLCNVLRD--DGITYQQYVTELTYLLFLKMM-------KE---QETESAI 49

Query: 64  GSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                 +  V   G    +FY                 +L  Y+   S N   +     +
Sbjct: 50  PEGYRWDDLVAKEGTELKTFY----------------QHLLLYL-GSSGN--EMLRHI-Y 89

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           S     + +   L KI K+   ++ +        + N+YE L+ +  SE   GA  + TP
Sbjct: 90  SDAATSISEPKNLEKIIKSIDALDWYSAKEE--GLGNLYEGLLEKNASEKKSGAGQYFTP 147

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------- 233
           R ++ +   L+           P +     DP  GT GF+  A  ++             
Sbjct: 148 RVLIDVMVQLV----------DPKIGERCADPAAGTFGFMIAADRYLKQQTDDYFDLDPQ 197

Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             +        G EL  +TH + +   L+  +E          I+ G +LS +    K  
Sbjct: 198 MAEFQRKEAFSGMELVKDTHRLALMNALLHSMEGR--------IEHGDSLSNNGKWMKNL 249

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG K   ++ + +                  S+  + FL  + N L+     
Sbjct: 250 DVILTNPPFGTKKGGERVSRDD------------LTFDTSNKQLNFLQLIYNALKDDGKA 297

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             RAA+VL  + LF    G   ++IRR L+    +  I+ LPT +F+   + T +   + 
Sbjct: 298 --RAAVVLPDNVLFESGVG---AQIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTR 352

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRML 468
            KT+    K   +   DL T++ + G KR  +        +  Y +    +   +   + 
Sbjct: 353 GKTDRDNTK--EVWVYDLRTNMPSFG-KRNQLTMAHFENFMKAYEAEDRSKVEDERWNVF 409

Query: 469 DYRT 472
               
Sbjct: 410 TREE 413


>gi|42779917|ref|NP_977164.1| type I restriction-modification system, M subunit [Bacillus cereus
           ATCC 10987]
 gi|42735835|gb|AAS39772.1| type I restriction-modification system, M subunit [Bacillus cereus
           ATCC 10987]
          Length = 484

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 174/485 (35%), Gaps = 83/485 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+ +            EK  + 
Sbjct: 2   NNQEIVQKLWNLCNVLRDDGITYQQYLTELTYIL---FLKMMN-----------EKGNSS 47

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFD 119
               +++E  +           EY   +L S      + + +  +     +  +I +   
Sbjct: 48  SEDRVNIEHVI---------PEEYRWESLVSREGIELKEHYQRLLLELGSSDNSILKQIY 98

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             ++ + + +   L KI K+   ++ +        + ++YE L+ +  SE   GA  + T
Sbjct: 99  ADASTS-ISEPKNLEKIIKSIDNLDWYNAEKE--GLGDLYEGLLEKNASETKSGAGQYFT 155

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++ +   L+           P +     DP  GT GF+  A  ++ +          
Sbjct: 156 PRVLIDVMVKLV----------DPKVGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDIDP 205

Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL  +TH + +   L+  +E           + G TLS +      
Sbjct: 206 EQAEFQKTEAFTGMELVKDTHRLALMNALLHGIEGRL--------EHGDTLSSNGKWLTS 257

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG K   ++   +                + S+  + FL  + N L+   N
Sbjct: 258 LDVILTNPPFGTKKGGERATRDD------------LTFETSNKQLNFLQLIYNALKDDGN 305

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              RAA++L  + LF    G   ++IRR L++   +  I+ LPT +F+   + T +   +
Sbjct: 306 A--RAAVILPDNVLFESGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 360

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRM 467
             KT+    K   +   DL T++ + G KR  + +      +  Y +        +   +
Sbjct: 361 REKTDRDSTK--EVWVYDLRTNMPSFG-KRTPLTEKHFDDFIKAYHAENRSNVEDERWNV 417

Query: 468 LDYRT 472
                
Sbjct: 418 FTREE 422


>gi|148927366|ref|ZP_01810897.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
 gi|147887265|gb|EDK72726.1| transcriptional regulator, Fis family [candidate division TM7
           genomosp. GTL1]
          Length = 675

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/486 (19%), Positives = 176/486 (36%), Gaps = 70/486 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           SL   +W     L        +G     I     L+  +   +P             G++
Sbjct: 5   SLVQKVWNYCNLLRD--DGLSYGDYLEQITYLLFLKMADEYSKP---------PFNRGTH 53

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           I  +   +            SL  L  +N   +    + +       +     F +   R
Sbjct: 54  IPTDINWQ------------SLRNLTGSNLEAHYIEVLQNLGKQP-GMLGQIYFKAQ-NR 99

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++    L+++     G       +   V   IYE L+ +F S+   GA  + TPR ++  
Sbjct: 100 IQNPAQLHRLVGLIDGETWV--GLDVDVKGEIYEGLLEKFASDTKTGAGQYFTPRPLIQA 157

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----VP 242
            T  L           P   +T+ D   GTGGF     +++A+    +K           
Sbjct: 158 MTECL----------RPEPSKTMADFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTF 207

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G E+ P T  +C+  + +  +      D    I    +L+ D  +GKRF Y L NPPFG
Sbjct: 208 TGNEIVPATARLCLMNLFLHNI---GDMDSKPPIHLTDSLASD--SGKRFDYILMNPPFG 262

Query: 303 KKWE--KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           KK       +   +  ++    R        S+  + F+ H+ ++L++     G+AA+++
Sbjct: 263 KKSSITVSNEDGTQSKESLTYERQDFWTT-TSNKQLNFVQHICSQLKVD----GKAAVIV 317

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             + LF G AG     IR+ LL+   I  I+ LPT +F+   +   +    NR   +   
Sbjct: 318 PDNVLFEGGAG---ETIRKKLLQTTEIHTILRLPTGIFYANGVKANVIFFDNRPASK--- 371

Query: 421 KVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTF 473
           +VQ  +   ++    N+    K + + +      +  Y       R   +  +   Y   
Sbjct: 372 EVQTKD-VWVYDMRTNQHFTLKEKKLANADLADFIKCYNPDNRHQRSETERFKKFTYDEV 430

Query: 474 GYRRIK 479
             R   
Sbjct: 431 VTRDKT 436


>gi|302380292|ref|ZP_07268763.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311897|gb|EFK93907.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 257

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 8/228 (3%)

Query: 1   MTEF-TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           MT+  +      ANFIW  A  L G +    +G VI+P T++RR EC LE T+ AV EKY
Sbjct: 10  MTDDVSIDITQEANFIWSIANKLRGVYMPDKYGDVIIPMTVIRRFECVLEKTKDAVVEKY 69

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                 +    +  +++G  FYNTS ++L  L     N ++N   YI SFS N   I   
Sbjct: 70  --TDNKSYPERAMYRISGKPFYNTSRFTLKELCNDPDNIQSNFIEYIESFSSNVLDILNQ 127

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +  + I ++ K   L+ + K FS ++L  +T     M  I+E+LI RF    +  A  +
Sbjct: 128 LEIKTHIKKMNKENCLFAVVKEFSELDLSEETFNSIKMGYIFENLIGRFYQ--NVDAGQY 185

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
            T RD++ +   ++            G + T+ D   G    +    N
Sbjct: 186 YTGRDIIKMMVYVITAEGCDDIY-DEGKVITIADQAAGFRVIIVIEAN 232


>gi|218901962|ref|YP_002449796.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820]
 gi|218539137|gb|ACK91535.1| type I restriction enzyme EcoKI M protein [Bacillus cereus AH820]
          Length = 484

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 175/467 (37%), Gaps = 79/467 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   +  +      IL    L+ +            EK  + 
Sbjct: 2   NNQEIVQKLWNLCNVLRDDGITYQQYLTELTYIL---FLKMMN-----------EKGNSS 47

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFD 119
               +++E  +           EY   +L S      + + +  +     +  +I     
Sbjct: 48  VEDRVNIEHVI---------PEEYRWESLVSREGIELKEHYQRLLLELGSSDNSILRQIY 98

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             ++ + + +   L KI K+   ++ +        + ++YE L+ +  SE   GA  + T
Sbjct: 99  ADASTS-ISEPKNLEKIIKSIDNLDWYNAEKE--GLGDLYEGLLEKNASETKSGAGQYFT 155

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------ 233
           PR ++ +   L+           P +     DP  GT GF+  A  ++ +          
Sbjct: 156 PRVLIDVMVKLV----------DPKIGEKCSDPAAGTFGFMIAADQYLKNQTDDYFDVDP 205

Query: 234 --HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +        G EL  +TH + +   L+  +E           +QG TLS +    K 
Sbjct: 206 EQAEFQKTEAFTGMELVKDTHRLALMNALLHGIEGRL--------EQGDTLSSNGKWIKN 257

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   L+NPPFG K   ++   +                + S+  + FL  + N L+    
Sbjct: 258 FDVILTNPPFGTKKGGERATRDD------------LTFETSNKQLNFLQLIYNALKDDGK 305

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              RAA++L  + LF    G   ++IRR L++   +  I+ LPT +F+   + T +   +
Sbjct: 306 A--RAAVILPDNVLFESGIG---AQIRRDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFT 360

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             KT+    K   +   DL T++ + G KR+ + +    + +  Y +
Sbjct: 361 REKTDRNSTK--EVWVYDLRTNMPSFG-KRKPLTEGYFEEFMTAYNA 404


>gi|188586602|ref|YP_001918147.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351289|gb|ACB85559.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 479

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 160/464 (34%), Gaps = 82/464 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W   + L  D   +  +      IL    L+ +       +     +    
Sbjct: 2   TNQEIIQKLWSLCDVLRDDGVTYHQYVTELTYIL---FLKMM-------KEK---ETEEV 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +S     G   YN     L  +G +  +   + Y+ +                
Sbjct: 49  IPKEYRWDSLTTKHGMELYNHYRQLLLDIGQSKNKLLSQIYMNA---------------- 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +++   L KI ++   ++ +        +  +YE L+ +  +E   GA  + TPR 
Sbjct: 93  -TTNIDEPKNLEKIIQSIDRLDWYSAREE--GLGALYEGLLEKNANETKTGAGQYFTPRP 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GSHH 234
           ++     L            P       DP  GT GF+  A  HV               
Sbjct: 150 LIDTIVEL----------TDPEPGERCNDPAAGTFGFMIAADRHVRKKTDDYFSLSQKEA 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G EL  + H + +   ++  LE +        I  G TLS+     K +  
Sbjct: 200 EFQVKEAFTGCELVKDVHRLGLMNAMLHELEGE--------IILGDTLSEAGKNLKNYDV 251

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG K   ++   +                  ++  + FL H+   L+       
Sbjct: 252 VLTNPPFGTKKSGERPTRDD------------LTYTTTNKQLNFLQHIYRSLKPNGKA-- 297

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G   ++IR  L+E   +  I+ LPT +F+   + T +   +  +
Sbjct: 298 RAAVVLPDNVLFEDNTG---AKIRNDLMEKCNLHTILRLPTGIFYAQGVKTNVLFFTRGQ 354

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           T++   K   +   DL T++ + G K   +  D     +  Y +
Sbjct: 355 TDKDNTK--EVWVYDLRTNMESLG-KTNPLRKDHFDDFIKAYKA 395


>gi|227878602|ref|ZP_03996525.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256843208|ref|ZP_05548696.1| type I restriction modification system [Lactobacillus crispatus
           125-2-CHN]
 gi|256850434|ref|ZP_05555862.1| type I restriction modification system [Lactobacillus crispatus
           MV-1A-US]
 gi|262046415|ref|ZP_06019377.1| type I restriction modification system [Lactobacillus crispatus
           MV-3A-US]
 gi|293382103|ref|ZP_06628049.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|312977434|ref|ZP_07789182.1| type I restriction-modification system, M subunit [Lactobacillus
           crispatus CTV-05]
 gi|227861808|gb|EEJ69404.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256614628|gb|EEU19829.1| type I restriction modification system [Lactobacillus crispatus
           125-2-CHN]
 gi|256712831|gb|EEU27824.1| type I restriction modification system [Lactobacillus crispatus
           MV-1A-US]
 gi|260573286|gb|EEX29844.1| type I restriction modification system [Lactobacillus crispatus
           MV-3A-US]
 gi|290921338|gb|EFD98394.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|310895865|gb|EFQ44931.1| type I restriction-modification system, M subunit [Lactobacillus
           crispatus CTV-05]
          Length = 483

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 96/547 (17%), Positives = 180/547 (32%), Gaps = 85/547 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     +   I   T    L+        ++    +      
Sbjct: 2   NNQEIVQKLWNECNILRDDGVS--YQDYITELTYILFLKM-------SKE---QGEQDDI 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 ++ V   G    N     L  LG+    N         S    +I    D S++
Sbjct: 50  PQKYQWDNLVSKEGLELSNFYRQLLLDLGNPEVVN---------SPRINSI--YADASTS 98

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I +      L KI K+   ++       D  + ++YE L+ +  SEV  GA  + TPR +
Sbjct: 99  IHKPAD---LEKIIKDIDALDWWSAR--DEGLGDLYEGLMEKNASEVKSGAGQYFTPRVL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235
           +++   +            P +     DP  GT GF+  A  ++ D             +
Sbjct: 154 INMMVRM----------TQPKIGDRCNDPAAGTFGFMVAADRYLKDQTDDYSTLSADKEE 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL   TH + +    +  ++           + G +LS +    K F   
Sbjct: 204 FQVKEAFSGMELVETTHRLAMMNEYLHGMDGRL--------ELGDSLSSNGKWMKDFDVV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K   D      +              K S+  + FL  + N L+       R
Sbjct: 256 LTNPPFGTKKGSDDSVSRDDL-----------TYKTSNKQLNFLQIIYNSLKHNGKA--R 302

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF   A      IR+ LL    +  I+ LPT +F+   + T +   +  ++
Sbjct: 303 AAVVVPDNVLF---ADGVGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGES 359

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472
           ++   K       D+   +R+ G KR  ++D    +   ++   +  K     D      
Sbjct: 360 DKDNTK--ETWIYDMRHQMRSFG-KRNPLSDKDFAEFEKLFCVDDRSKRKETWDKEKNSN 416

Query: 473 FGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             +R+  +   L+          ++        +                D +  + + +
Sbjct: 417 GRWRKFTIDEILKRPNTSLDISWMNDEEEHDNRSLKEILDEMNDKSKAIRDAIAELNKAL 476

Query: 527 YPYGWAE 533
                 +
Sbjct: 477 EGIDDED 483


>gi|251798709|ref|YP_003013440.1| N-6 DNA methylase [Paenibacillus sp. JDR-2]
 gi|247546335|gb|ACT03354.1| N-6 DNA methylase [Paenibacillus sp. JDR-2]
          Length = 494

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 165/477 (34%), Gaps = 80/477 (16%)

Query: 9   ASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
             +   +W     L  D   +  +                 E T     +         I
Sbjct: 4   QDIVQKLWNLCNVLRDDGITYHQY---------------VTELTYVLFLKMMKETDNEGI 48

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
             E +   +      T  + ++     + R  L       ++  K I     + +  + +
Sbjct: 49  LPEQYRWDS-----LTERHGMA--LQQHYRQLLLDLGNQGNETIKQI-----YMNATSNI 96

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +   L KI  +   ++ +        + ++YE L+ +  SE   GA  + TPR ++ + 
Sbjct: 97  NEPKNLEKIITSIDQLDWYSAKEE--GLGDLYEGLLEKNASETKSGAGQYFTPRPLIDVI 154

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPI 239
           T L+           P       DP  GT GF+  A  HV +             +    
Sbjct: 155 TKLV----------DPQPGERCNDPAAGTFGFMIAADRHVRNNTDDYFDLGEKEAEFQKH 204

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G EL  +TH + +   ++  +  +        I  G TLS D    K F   L+NP
Sbjct: 205 QAFTGVELVKDTHRLAMMNAMLHDIHGE--------IILGDTLSDDGTNLKNFDVILTNP 256

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG K   ++   +                  ++  + FL H+   L+       RAA++
Sbjct: 257 PFGTKQGGERPTRDD------------LTFATTNKQLNFLQHIYRALKANGKA--RAAVI 302

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L  + LF    G   ++IR  L++   +  I+ LPT +F+   + T +   +  KT++  
Sbjct: 303 LPDNVLFESGVG---TKIRADLMDKCNLNTILRLPTGIFYAQGVKTNVLFFTREKTDKDS 359

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472
            K   I   DL T++ + G KR  +        +  Y++    +   +   +     
Sbjct: 360 TK--NIWVYDLRTNMPSFG-KRNPLTVSHFDAFVAAYMAEDRTKVEDERWNVFTRED 413


>gi|255523606|ref|ZP_05390573.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|255512661|gb|EET88934.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
          Length = 473

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 164/472 (34%), Gaps = 86/472 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   + + +W     L  D   +  +      IL    L+  +      +          
Sbjct: 2   NTQEIVSKLWNLCNVLRDDGITYHQYVTELTYIL---FLKMAKETGAEEK---------- 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +      G       +  L+ LG   T               + I     +  
Sbjct: 49  IPEGYRWDDLKSKNGIELKKFYKELLNYLGEKGTGT------------VQQI-----YQG 91

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
           +   +++   L KI     G++ +        + N+YE L+ +  SE   GA  + TPR 
Sbjct: 92  SATNIDEPKNLEKIITTIDGLDWYSAKEE--GLGNLYEGLLEKNASEKKSGAGQYFTPRV 149

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------H 234
           ++ +   L+           P       DP  GT GF+  A +++     +         
Sbjct: 150 LIDVMVKLI----------DPKPGEKCNDPAAGTFGFMIGADHYLKQKYDNYFDLDTDLQ 199

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           +        G EL  ETH + +   ++  +E         NI  G TL+ +    K    
Sbjct: 200 EFQRTKAFSGCELVHETHRLALMNAMLHDIEG--------NIILGDTLTNEGKKMKDLDV 251

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            LSNPPFG K   ++   +                  S+  + FL H+   L+       
Sbjct: 252 VLSNPPFGTKKGGERATRDD------------LTFMTSNKQLNFLQHIYRSLKADGKA-- 297

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G   ++IR  L++   +  I+ LPT +F+   + T +   +   
Sbjct: 298 RAAVVLPDNVLFQEGDG---TKIREDLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTRGT 354

Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--SRENGK 463
           T++   K V   +   L T+++N G K   + +      +  Y   +RE  K
Sbjct: 355 TDKDNTKEVWFYD---LRTNMQNFG-KTNPLKESHFDDFVKAYKAENREEVK 402


>gi|307945076|ref|ZP_07660412.1| type I restriction-modification system DNA methylase [Roseibium sp.
           TrichSKD4]
 gi|307770949|gb|EFO30174.1| type I restriction-modification system DNA methylase [Roseibium sp.
           TrichSKD4]
          Length = 722

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 76/483 (15%), Positives = 158/483 (32%), Gaps = 67/483 (13%)

Query: 8   AASLANF---IWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +  F   +W  A++L         ++   I+    LR+         +A+  +    
Sbjct: 6   LTDIEQFDAELWTIADNLRANSGLASNEYFMPIMGLLFLRQATNRYYEALAAIEAEKANG 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DF 120
              +  L         +           +       +L   + +  +  +  F       
Sbjct: 66  KMPDRPLRDVDFTRRRAMMLPEAARYDVILDQPKDGSLGEALTAAMEAVEEHFPPLAGQL 125

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                R +   LL  + + F    L        V   IYE+ +  F  + +    +F TP
Sbjct: 126 PKDYERFDD-ELLESMMRKFDTEALR--KASGDVFGRIYEYFLAEFSKQGAHDNGEFFTP 182

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V     ++                 ++DP CG+GG    + + +   G         
Sbjct: 183 PSIVQTIVNVI-----------EPDHGIIFDPACGSGGMFVQSSHFIEHEGKDTMKRV-- 229

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---TLSKDLFTG-------- 289
             +G E    T  +    + +  L          +IQ G+   T  KD            
Sbjct: 230 TFYGHEKNETTAKLAQINLAVHGL--------QGSIQAGNEAITYYKDPHELIQHDKNAD 281

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLM 340
               +  + ++NPPF       +             R   GLP      K+S+ + L++ 
Sbjct: 282 RVIGKCDFVMANPPFNVDEVDAEKVKN-------DPRLPFGLPGVNKAKKVSNANFLWMS 334

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           +  N L+      GRA +V+SS       AG  E+++R+ L+E   ++ ++ +  + F+ 
Sbjct: 335 YFYNYLKDT----GRAGVVMSSQA---SSAGRDEAKVRQKLVETGAVDVMIDIRGNFFYT 387

Query: 401 TNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             +   LW     K  +  R+  V +++A +++  +                 I+ +Y  
Sbjct: 388 RTVPCQLWFFDRAKEADEARKDHVLMLDARNIYRKVSRAIYDFSPEQQKNIAAIVWLYRG 447

Query: 459 REN 461
           + +
Sbjct: 448 QSD 450


>gi|32476612|ref|NP_869606.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica
           SH 1]
 gi|32447158|emb|CAD76984.1| type I restriction enzyme StySPI M protein [Rhodopirellula baltica
           SH 1]
          Length = 507

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 156/470 (33%), Gaps = 88/470 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L        +   +  L F   L+ +    + T         +  
Sbjct: 2   NTNDIVGKLWSLCHVLRD--DGITYQDYVNELSFLLFLKMM----QETGQ------ESEL 49

Query: 64  GSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                        G    +FY      L  LG+              S   +++F D + 
Sbjct: 50  PDGYRWSDLESKDGVEQLAFY---RAMLVHLGTEG------------SPRVQSVFADAN- 93

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 L +   L K+ ++   ++ +        + ++YE L+ R  SE   GA  + TP
Sbjct: 94  ----TSLRQPKNLSKLVQDLDELDWYVAREE--GLGDMYEGLLERNASEKKSGAGQYFTP 147

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GS 232
           R ++      +           P     + DP  GTGGFL  A  ++ +           
Sbjct: 148 RPLIECMVNCM----------RPQPGEVIQDPAAGTGGFLIAAHQYICNQTDDLFDLDAD 197

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     H  EL P+TH + V   ++  +          ++  G ++          
Sbjct: 198 EQVFQKQQAYHAVELVPDTHRLLVMNCMLHGVGG--------HLASGDSMGSIGQNLPNA 249

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG K          +                 +  + FL H+   L+     
Sbjct: 250 DVILTNPPFGTK-RGGGKPTRDDFTFV-----------TGNKQLAFLQHIYRGLKP---- 293

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GGRAA+VL  + LF    G   + IR  L++   +  I+ LPT +F+   + T +   + 
Sbjct: 294 GGRAAVVLPDNVLFEEGVG---TRIRADLMDKCNLHTILRLPTGIFYAQGVKTNVLFFTR 350

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            KT+    K       DL T++   G KR  +      +    Y  + +G
Sbjct: 351 GKTDTGNTK--QTWVYDLRTNMPAFG-KRTPLTHGHFAEFEKCYGKKADG 397


>gi|14518368|ref|NP_116851.1| putative hsdm of type i restriction-modification system
           [Microscilla sp. PRE1]
 gi|14485003|gb|AAK62885.1| MS163, putative HsdM of type I restriction-modification system
           [Microscilla sp. PRE1]
          Length = 362

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 132/383 (34%), Gaps = 51/383 (13%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID------ 68
           +W  A +L G     ++   ILP   ++ L    E     +                   
Sbjct: 12  LWDAANELRGAVSENNYKNYILPLVFVKHLSERYEMVHDELDNMLHDPKSDYYTTDNEEI 71

Query: 69  ----LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD--FSS 122
                +     +  +F      S   L     +++++  +    D  + +   ++   ++
Sbjct: 72  SYVLEDQDEYRSRNTFKIPKTASWQYLKDNAEQDDIKVIVDDAFDVMQDLLTAYNPQLNN 131

Query: 123 TIARLE-----KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
            + R+       A     I    S  +          ++  IYE+ I RF      GA  
Sbjct: 132 LLPRIFVRSELSAKQTGGIINLLSHPKFSEKENPESDILGRIYEYYIGRFAMAEGSGAGQ 191

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V L   LL                 ++DP CG+ G    ++  V + G +   
Sbjct: 192 FFTPGSIVRLLVELL-----------EPYKGRIFDPACGSWGMFVQSLKFVKEHGGN--- 237

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +  +GQE+  +T  +C+  +++R L  D        I+ G++L  D F   +  + +
Sbjct: 238 KSDISIYGQEMTAQTLRLCLMNLMLRELSFD--------IKLGNSLLDDKFPDLKVDFII 289

Query: 297 SNPPFGKKWEKDKD-AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF       +D         G    F        + + +++    + L    +  G 
Sbjct: 290 ANPPFNVSNWHPEDLPEGDPRLFGPKEEF----TTDGNANYMWMQTFWHHL----SDTGT 341

Query: 356 AAIVLSSSPLFNGRAGSGESEIR 378
           A IV+++  + +     GE   R
Sbjct: 342 AGIVMANGAMTSN--TKGEKSAR 362


>gi|323466193|gb|ADX69880.1| Site-specific DNA-methyltransferase (Adenine-specific)
           [Lactobacillus helveticus H10]
          Length = 484

 Score =  196 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 92/548 (16%), Positives = 180/548 (32%), Gaps = 86/548 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     +   I   T    L+        ++    +      
Sbjct: 2   TNQEIVQKLWSECNVLRDDGVS--YQDYITELTYILFLKM-------SKE---QDEEKDI 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 ++ +   G    N     L  LG+          I +   NA    +       
Sbjct: 50  PEKYRWDNLINKEGLELKNFYRQLLLDLGNPEVVK--SERINAIYANASTAID------- 100

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                +   L KI K+ + ++          + ++YE L+ +  +EV  GA  + TPR +
Sbjct: 101 -----EPANLEKIIKDINDLDWWSAREE--GLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           +++   +            P +     DP  GT GF+  A  ++ D    +         
Sbjct: 154 INMMVKM----------TEPKIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSELSEEKYD 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P TH + +    +  ++           +QG +LS +    K F   
Sbjct: 204 FQVKEAFSGMELVPNTHRLAIMNEYLHGMDGRL--------EQGDSLSANGKWMKNFDVV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K   ++   +                + S+  + FL  + N L+       R
Sbjct: 256 LTNPPFGTKKGGERVTRDD------------LTYETSNKQLNFLQIIYNSLKRDGKA--R 301

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF   A     EIR+ LL    +  I+ LPT +F+   + T +   +    
Sbjct: 302 AAVVVPDNVLF---ADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRG-- 356

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472
           EE +   +     D+   +R+ G KR  +ND    +   ++   +  K     D      
Sbjct: 357 EEDKDNTKETWIYDMRHQMRSFG-KRNPLNDKDFAEFEKLFCVDDRSKRKETWDKEKNPN 415

Query: 473 FGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             +R+  +    + +        +        ++                + +  + + +
Sbjct: 416 GRWRKFTIDEIKKRTNTSLDISWMSDEEEHETKSLKEILSDMNEKSKAISEAIAELNKAL 475

Query: 527 YPYGWAES 534
                +E 
Sbjct: 476 EGIDDSED 483


>gi|257094685|ref|YP_003168326.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257047209|gb|ACV36397.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 606

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 112/603 (18%), Positives = 200/603 (33%), Gaps = 94/603 (15%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRSAV 55
            +  +L++ I    + L       GD          LP       L+ L+  LE      
Sbjct: 20  TTRENLSSLIGTARQILRKDKGLNGDVDR-------LPLLTWVMFLKFLDD-LETVHEEE 71

Query: 56  REKYLAFGGSNIDLESFVK--VAGYSFYNTSEYSLSTLGST-------NTRNNLESYIAS 106
            +         I+     +   A     N  E  L+ +G              L SY+  
Sbjct: 72  ADLDGKRYQPIIEAPYRWRDWAAREDGINGDEL-LAFIGQEVTVRADGKVGKGLFSYLRG 130

Query: 107 FSD-----NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
            +      + + +  +  F     R+    LL  I    +GI     +     +S++YE 
Sbjct: 131 LAGLGEKGSQREVVANV-FKGVQNRMVSGYLLRDIINKINGIHFR-SSEEIHTLSHLYES 188

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           ++R         + +F TPR VV     +            P +  T+ DP CGTGGFL 
Sbjct: 189 MLREMRDAAG-DSGEFYTPRPVVRFMVQV----------TDPKLGETVLDPACGTGGFLV 237

Query: 222 DAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            A +H+A      +  +        GQE +P  + +    +L+  LE       +  I  
Sbjct: 238 GAYDHIAAQVTTPAEWRKLQRETLFGQEAKPLPYMLVQMNLLLHGLE-------APQIAY 290

Query: 279 GSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           G+TL     ++  G+R    L+NPPFG            E + G    F P +       
Sbjct: 291 GNTLDRRINEIGHGERVDVILTNPPFG-----------GEEEVGIKANFPPNMQTAETTQ 339

Query: 336 MLFLMHLANKLE---------LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           + FL ++  KL           P   GGRAA+V+ +  LF        + I+  +L+   
Sbjct: 340 L-FLQYIMRKLRVVGAPVRGGKPAARGGRAAVVVPNGTLFGDGIS---AVIKEEMLKEFR 395

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  IV LP  +F   T+I   L         +     ++          R +  K   + 
Sbjct: 396 LHTIVRLPQGVFAPYTDIPANLLFFERGGPTDTIWYYEMPLPEG-----RKKYTKTTPLQ 450

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA----- 500
            D+    L  + +RE G  +  +D+       + V  P       ++     L       
Sbjct: 451 FDEFASALAWWDAREEGPQAWKVDFAAKRQAAVDVATPNWQRAESERNAAIALGKPIRGI 510

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
           + T +  +   ++   + L+ +      +  A    +    +       +        A 
Sbjct: 511 EQTIQAAANGDKAALQEQLRALKAGQQAHEQAAKVAQAEGDALYWPIYNLDIKNPNAKAG 570

Query: 561 INA 563
           +  
Sbjct: 571 LEH 573


>gi|237721953|ref|ZP_04552434.1| type I restriction-modification system [Bacteroides sp. 2_2_4]
 gi|229448822|gb|EEO54613.1| type I restriction-modification system [Bacteroides sp. 2_2_4]
          Length = 490

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 160/453 (35%), Gaps = 64/453 (14%)

Query: 21  DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80
            L G          +L    L+             +         N      +     SF
Sbjct: 15  ILGGTISADQCRDYVLALLFLKSAS-------EYYKSNNSFQQDDNSPALRLLVSERSSF 67

Query: 81  -YNTSEYS---LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIARL-EKAGLLY 134
            Y   E     L  L +          + +       I +  DF  + +  +  ++  L 
Sbjct: 68  DYLCKELDSPELGRLINMALYE--LEQVNALVTEGYEINKAIDFESNILGDMNARSIKLR 125

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++   F  I L   T     + ++Y  L+  F  E  +   + +TP +VV L T L+   
Sbjct: 126 ELLLLFQEIRLTNATGQLIDVGDLYNQLLYIFAEEAGKKINNVLTPTEVVSLITKLI--- 182

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                 +       L DP  G+G  L +    +   G+          +GQE+    +A+
Sbjct: 183 ------DGDRKNACLCDPASGSGTLLVEVGKKMGIRGTE--------LYGQEVNWNLYAL 228

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKD 310
               +++   +             G +LS          ++F   +S PPF  KW  +  
Sbjct: 229 TKMNLMLNGFKGATFL-------WGDSLSNPKLLDHGGLRKFDIVVSVPPFADKWAAE-- 279

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               E  +    RF  G+P  S  +  ++ H+   L       G+A +V+    LF    
Sbjct: 280 ----EAYSDFYKRFKYGIPPKSQVTWAYISHILASLRND----GQAVVVVPVGVLFRNT- 330

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              ES+IR  ++E++L+EA++ LP +LF+   I+T + +      E  R +   ++A   
Sbjct: 331 ---ESKIREQIIEHNLLEAVIELPPNLFYGAAISTAILVFRK---ERMRTQTLFVDARKG 384

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           + S +        ++D    Q+ + Y     G+
Sbjct: 385 YISNKGL----CKLSDKMLEQLSNTYKKFLAGE 413


>gi|17230180|ref|NP_486728.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
 gi|17131781|dbj|BAB74387.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
          Length = 657

 Score =  196 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 167/393 (42%), Gaps = 46/393 (11%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F ++  +    F TP +V  + + ++          +    +T+YDPTCG+G  L  
Sbjct: 1   MRNFATQSGKSKGQFYTPAEVSRVISQVIGVN------SAQSQSQTIYDPTCGSGSLLLK 54

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           + +         +    L  +GQE++  T A+    M++           +  I Q +TL
Sbjct: 55  SAD---------EAERGLTIYGQEMDNATRALARMNMILHG-------HPTAEIWQDNTL 98

Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           S   F       K F + ++NPPF  K   +   + K+           G+P   +G   
Sbjct: 99  SSPYFKDADGSLKTFDFAVANPPFSSKAWSNGLDLAKDEFQRFDN---YGIPPAKNGDYA 155

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+H+   L+      G+ AI+L    LF G A   E+EIR+ L+   +I+ I+ LP +L
Sbjct: 156 FLLHMVCSLKS----NGKGAIILPHGVLFRGNA---EAEIRKNLISKGIIKGIIGLPPNL 208

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T I   + +L     E R+G + +I+A+  +     +G K R + +    +I+D++ 
Sbjct: 209 FYGTGIPACIIVLDKEDAENRQG-IFMIDASKGFV---KDGNKNR-LREQDIHKIVDVFN 263

Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI--TWRKLSPLHQSF 514
            +    K+SRM+           +  P  +    ++  +  +EA +     K      S 
Sbjct: 264 KQLEVAKYSRMVPVEEIAGNEYNLNIPRYIDSQ-EEEDIQDIEAHLLGGIPKRDIEALSD 322

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
           +  +   + Q+++       ++   I  +E K 
Sbjct: 323 YWQVYPTLQQELFEAADRPGYLMLKIPGSEVKA 355


>gi|145223000|ref|YP_001133678.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145215486|gb|ABP44890.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 494

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 157/478 (32%), Gaps = 65/478 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L + +W     L  D     ++ + +     L+         R+  +             
Sbjct: 7   LVDKLWSYCNVLRDDGVGVIEYTEQLTYLLFLKMAH-----ERATRKLNPQKIVPDEYSW 61

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK 129
           +  +   G          L  L                              +     + 
Sbjct: 62  QKLLDAEGTDLEVEYTKILVGLAQQP-----------------GTLGTIYRKAQNRVQDP 104

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A L   I                 +  + YE L+ +  S+   GA  + TPRD++     
Sbjct: 105 AKLKRLIIDLIDKENWSASGTD--LKGDAYEELLAKGASDKGSGAGQYFTPRDLIRAIVD 162

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----HG 244
           ++          +P +  T+ DP CGTGGFL  A  HVA+                   G
Sbjct: 163 VI----------NPSVSDTIVDPACGTGGFLLVAHEHVAEGAGKLTPTQRSHLRDKFVTG 212

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            EL   T  +    +L+  +      D    I+    L  D   G+R+   LSNPPFG+K
Sbjct: 213 YELVDGTARLAAMNLLLHGI---GTADGESLIEVRDALISD--PGQRWSVVLSNPPFGRK 267

Query: 305 WE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                  A  +E ++         +   S+  + FL H+   L    +  GRAA+VL  +
Sbjct: 268 SSLTMVGADGREARDDVEIERQDFVVTTSNKQLNFLQHIMTIL----DINGRAAVVLPDN 323

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF G A  GE+ +RR LL++  +  ++ LPT +F+   +   +     +   E+     
Sbjct: 324 VLFEGGA--GET-LRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFFDRKPAAEQPW--- 377

Query: 424 LINATDLWTSIRNEGK--KRRIINDDQRRQILDIY------VSRENGKFSRMLDYRTF 473
                 ++    N+    K+  +      +  D Y        R   +  +  DY   
Sbjct: 378 -TKKLWVYDLRTNQHFTLKQNPLRRHHLDEFADSYLSGKPREERVESERWKAYDYDDL 434


>gi|295692968|ref|YP_003601578.1| type i restriction-modification enzyme, m subunit [Lactobacillus
           crispatus ST1]
 gi|295031074|emb|CBL50553.1| Type I restriction-modification enzyme, M subunit [Lactobacillus
           crispatus ST1]
          Length = 485

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/547 (17%), Positives = 178/547 (32%), Gaps = 83/547 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63
               +   +W     L  D     +   I   T    L+        ++    E      
Sbjct: 2   KNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKM-------SKEQGEE---NDI 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 ++ V   G    N  +  L  LG+              S    AI     ++  
Sbjct: 50  PEKYRWDNLVSKDGLELSNFYKQLLLDLGNPQVVK---------SSRINAI-----YADA 95

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              + K   L KI K+  G++       D  + ++YE L+ +  +EV  GA  + TPR +
Sbjct: 96  STSIHKPASLEKIIKDIDGLDWWSAR--DEGLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HK 235
           +++   +            P +     DP  GT GF+  A  ++ D             +
Sbjct: 154 INMMVRM----------TRPKLGDRCNDPAAGTFGFMVAADQYLKDKNDDYSSLSEEKGE 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL   TH + +    +  +            + G +LS +    K F   
Sbjct: 204 FQVNEAFSGMELVETTHRLALMNQYLHGMNGRL--------ELGDSLSANGNWMKNFDVV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K   D D                     S+  + FL  + N L+       R
Sbjct: 256 LTNPPFGTKKGIDNDKAASRDDITFE---------TSNKQLNFLQIIYNSLKHDGKA--R 304

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF   A S    IR+ LL    +  I+ LPT +F+   + T +   +  ++
Sbjct: 305 AAVVVPDNVLF---ADSVGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGES 361

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472
           ++   K       D+   +R+ G KR  +N+    +   ++   +  K     D      
Sbjct: 362 DKDNTK--ETWIYDMRHQMRSFG-KRNPLNEKDFAEFEKLFCVDDRSKRKETWDKDKNPN 418

Query: 473 FGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
             +R+  +   L+   I      ++        +                D +  + + +
Sbjct: 419 GRWRKFTIDEILKRPNISLDISWMNDEEEHDNRSLKEILDEMNDKSKAIRDAIAELNKAL 478

Query: 527 YPYGWAE 533
                 +
Sbjct: 479 EGIDDED 485


>gi|161507779|ref|YP_001577743.1| Type I restriction modification system [Lactobacillus helveticus
           DPC 4571]
 gi|160348768|gb|ABX27442.1| Type I restriction modification system [Lactobacillus helveticus
           DPC 4571]
          Length = 484

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/549 (17%), Positives = 186/549 (33%), Gaps = 88/549 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     +   I   T    L+        ++    +      
Sbjct: 2   TNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKM-------SKE---QDEEKDI 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 ++ V   G    N     L  LG+          I +   NA    +       
Sbjct: 50  PEKYRWDNLVNKEGLELKNFYRQLLLDLGNPEVVK--SERINAIYANASTAID------- 100

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                +   L KI K+ + ++          + ++YE L+ +  +EV  GA  + TPR +
Sbjct: 101 -----EPANLEKIIKDINDLDWWSAREE--GLGDLYEGLMEKNANEVKSGAGQYFTPRVL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           +++   +            P +     DP  GT GF+  A  ++ D    +         
Sbjct: 154 INMMVKM----------TKPKIGDRCNDPAAGTFGFMVAADQYLKDKTDDYSELSEEKYD 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P TH + +    +  ++           +QG +LS +    K F   
Sbjct: 204 FQVKEAFSGMELVPNTHRLAIMNEYLHGMDGRL--------EQGDSLSANGKWMKNFDVV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K   ++   +                + S+  + FL  + N L+       R
Sbjct: 256 LTNPPFGTKKGGERVTRDD------------LTYETSNKQLNFLQIIYNSLKRDGKA--R 301

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF   A     EIR+ LL    +  I+ LPT +F+   + T +   +    
Sbjct: 302 AAVVVPDNVLF---ADGVGEEIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRG-- 356

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD---YRT 472
           EE +   +     D+   +R+ G KR  +ND    +   ++   +  K     D      
Sbjct: 357 EEDKDNTKETWIYDMRHQMRSFG-KRNPLNDKDFVEFEKLFCVDDRSKRKETWDKEKNPN 415

Query: 473 FGYRRIKVL----RP---LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             +R+  +     RP   L +S++ D+      ++                + +  + + 
Sbjct: 416 GRWRKFTIDEIKKRPNTSLDISWMSDEEEHET-KSLKEILSDMNEKSKAISEAIAELNKA 474

Query: 526 IYPYGWAES 534
           +     +E 
Sbjct: 475 LEGIDDSED 483


>gi|281421792|ref|ZP_06252791.1| type I restriction-modification system, M subunit [Prevotella copri
           DSM 18205]
 gi|281404150|gb|EFB34830.1| type I restriction-modification system, M subunit [Prevotella copri
           DSM 18205]
          Length = 477

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 152/464 (32%), Gaps = 76/464 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57
           M +   +  +L   +W  A  L G      F   I  L     L+  +  +E        
Sbjct: 1   MAKNITTEQTLTKKVWNLATTLAGVGVG--FTDYITQLTYLLFLKMDDENMELFGE---- 54

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
              +        +    + GY      E +L  L   +                  +   
Sbjct: 55  --DSSIPVGYRWKDLTGLDGYDLVKQYESTLKLLSQQD-----------------DLIGT 95

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +   +++K   L K+       +     +   V   IYE ++ + G +   GA  +
Sbjct: 96  IYTKAQ-NKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGAGQY 152

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++      L           P +  T+ DP CGTGGFL  A +++ +   +    
Sbjct: 153 FTPRPLIKAMVDCL----------QPQIGETVCDPACGTGGFLLAAYDYMKEQSQNRDKL 202

Query: 238 P---ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   HG ++ P    +    + +  + +D        I    +L K+         
Sbjct: 203 DFLNNKALHGNDITPLVVTLASMNLYLHGIGTD-----HSPIVCEDSLEKE--PSTLVDV 255

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG +     +    +                 +  + FL H+   L+     GG
Sbjct: 256 ILANPPFGTRPAGSVEINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GG 300

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF G AG     IR+ LL +  +  I+ LPT +F+   +   +   +  +
Sbjct: 301 RAAVVLPDNVLFEGNAG---ETIRKKLLSDFNLHTILRLPTGIFYAQGVKANVLFFTKGQ 357

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             +    +   +    + +          +        +  Y +
Sbjct: 358 PTK---NIWFYD----YRTGVKHTLATNKLERHHLDDFVTCYHA 394


>gi|284108605|ref|ZP_06386423.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3]
 gi|283829885|gb|EFC34174.1| N-6 DNA methylase [Candidatus Poribacteria sp. WGA-A3]
          Length = 271

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 117/314 (37%), Gaps = 57/314 (18%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +WK+ ++L G    + +   +L    ++ +                   
Sbjct: 1   MALKKSQLYSSLWKSCDELRGGMDASQYKDYVLTLLFMKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-TRNNLESYIASFSD--NAKAIFEDFDF 120
            +           G  F       +  L       + +   IA  ++    K + +  DF
Sbjct: 45  HAGKPGALIEVPVGGGF-----ADMVKLKGDKEIGDKINKIIARLAEANELKGVIDQADF 99

Query: 121 SSTIARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAE 175
           +    +L         L K+   F  ++ H +    D ++ + YE+L+R F +E  +   
Sbjct: 100 NDE-GKLGSGKELQDRLSKLVAIFESLDFHANRAEGDDLLGDAYEYLMRHFATESGKSKG 158

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +V  +   ++    D    +      T+YDPTCG+G  L  A +         +
Sbjct: 159 QFYTPAEVSRIMAKVVGIGSDTRQDQ------TIYDPTCGSGSLLLKAAD---------E 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----K 290
            P  +  +GQE++  T+++    M++           + ++  G+TL+   F       K
Sbjct: 204 APNGITVYGQEMDNATYSLARMNMILHN-------HPTADLWHGNTLAAPYFKNQNGSLK 256

Query: 291 RFHYCLSNPPFGKK 304
            F + ++NPPF  K
Sbjct: 257 TFDFAVANPPFSAK 270


>gi|298384307|ref|ZP_06993867.1| type I restriction-modification system, M subunit [Bacteroides sp.
           1_1_14]
 gi|298262586|gb|EFI05450.1| type I restriction-modification system, M subunit [Bacteroides sp.
           1_1_14]
          Length = 472

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/552 (17%), Positives = 179/552 (32%), Gaps = 93/552 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M     +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNNTTEQSLTKKVWSLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   +       + + G       E +L  L     ++NL   I          
Sbjct: 51  MFGE-ESAIPTGYQWNDLIALDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +          +P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLAAYDYMKVQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             +  +   ++   +    + +          +        +  Y +R     +   +  
Sbjct: 355 KGQPTK---EIWFYD----YRTDVKHTLATNKLERHHLDDFISCYNNRVETYDAE--NNP 405

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              +R+  +   L            +   DITW K      +  L  L   ++       
Sbjct: 406 QGRWRKYPIEDILVR---------DKTSLDITWIKQGGEADNRSLAELMADIKDKSQTIS 456

Query: 532 AESFVKESIKSN 543
           +     E + +N
Sbjct: 457 SAVAELEKLLAN 468


>gi|291485260|dbj|BAI86335.1| hypothetical protein BSNT_04128 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 476

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 99/543 (18%), Positives = 189/543 (34%), Gaps = 80/543 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   +   +W     L        + + +   T L  L+   E     V           
Sbjct: 2   NNQEIVQKLWNLCNVLRD--DGITYQQYVTELTYLLFLKMMKEQETEGVI-------PEG 52

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
              +  +   G       +  L  LGS            S ++  + I     +S     
Sbjct: 53  YRWDDLLDKEGLELKTFYQRLLLELGS------------SENERLRLI-----YSDASTS 95

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           + +   L KI K+   ++ +        + N+YE L+ +  SE   GA  + TPR ++ +
Sbjct: 96  IAEPKNLEKIIKSIDALDWYNAKEE--GLGNLYEGLLEKNASEKKSGAGQYFTPRVLIDV 153

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPP 238
              L+           P +     DP  GT GF+  A  ++ +             +   
Sbjct: 154 MVQLI----------DPKIGERCADPAAGTFGFMIAADQYLKNQTDDYFDIEPQEAEFQK 203

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL  +TH + +   L+  +E           +QG TLS +    K F   L+N
Sbjct: 204 KEAFVGMELVKDTHRLALMNALLHNIEGRL--------EQGDTLSGNGKWMKNFDVILTN 255

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG K   ++ + +                + S+  + FL  + N L+   N   RAA+
Sbjct: 256 PPFGTKKGGERVSRDD------------LTFETSNKQLNFLQLIYNALKDDGNA--RAAV 301

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +L  + LF    GS   +IRR L+    +  I+ LPT +F+   + T +   +   T++ 
Sbjct: 302 ILPDNVLFESGIGS---QIRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTRGTTDQD 358

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRTFG 474
             K   +   DL T++ + G KR  +        +  YV+    +   +           
Sbjct: 359 NTKD--VWVYDLRTNMTSFG-KRNQLTMAHFEHFMKAYVAEDRSKVEDERWNKFSREEIA 415

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +   +   + +      +    L   I   + +       +++L  +++++      E 
Sbjct: 416 KKDDSLD--IGLIADESLSSYENLPDPIESAEEAIAKLQQAMELLNEVVEELRAVEEDEV 473

Query: 535 FVK 537
             K
Sbjct: 474 VKK 476


>gi|261419106|ref|YP_003252788.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|261375563|gb|ACX78306.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
          Length = 493

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 160/479 (33%), Gaps = 86/479 (17%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +   +W     L  D   +  +   +     L+                          
Sbjct: 5   EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               +K  G  +     Y    L   +    +   +  + +       +     ++   +
Sbjct: 39  ---MMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQI-YTDATS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            + +   L KI +    ++ +        +  +YE L+ +  SE+  GA  + TPR ++ 
Sbjct: 95  NIREPKNLEKIIRTIDALDWYNAKEE--GLGALYEGLLEKNASELKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237
           +   L+           P      +DP  GT GF+  A  HV               +  
Sbjct: 153 VIVELV----------DPKPGERCHDPAAGTFGFMIAASRHVRAKTDDYFDLSEEEIRFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + V   L+  +  D        I  G TLS      K +   L+
Sbjct: 203 KYKAFSGVELVRDTHRLAVMNALLHDVHGD--------ILLGDTLSPLGEQLKGYDVILT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K   ++              F       S+  + FL H+   L        RAA
Sbjct: 255 NPPFGTKKGGERATRTD---------FTFMT---SNKQLNFLQHIYRALRPNGKA--RAA 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +    E 
Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRG--ET 355

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472
             G  + +   DL T++ + G KR  +  D     +  Y +    + + +   +     
Sbjct: 356 DTGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTAEDRHQVDDERWNVFTRDD 413


>gi|297530925|ref|YP_003672200.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
 gi|297254177|gb|ADI27623.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. C56-T3]
          Length = 493

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 160/479 (33%), Gaps = 86/479 (17%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +   +W     L  D   +  +   +     L+                          
Sbjct: 5   EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               +K  G  +     Y    L   +    +   +  + +       +     ++   +
Sbjct: 39  ---MMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQI-YTDATS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            + +   L KI +    ++ +        +  +YE L+ +  SE+  GA  + TPR ++ 
Sbjct: 95  NIREPKNLEKIIRTIDALDWYNAKEE--GLGALYEGLLEKNASELKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237
           +   L+           P      +DP  GT GF+  A  HV               +  
Sbjct: 153 VIVELV----------DPKPGERCHDPAAGTFGFMIAASRHVRAKTDDYFDLSEEEIRFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + V   L+  +  D        I  G TLS      K +   L+
Sbjct: 203 KYEAFSGVELVRDTHRLAVMNALLHDVHGD--------ILLGDTLSPLGEQLKGYDVILT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K   ++              F       S+  + FL H+   L        RAA
Sbjct: 255 NPPFGTKKGGERATRTD---------FTFMT---SNKQLNFLQHIYRALRPNGKA--RAA 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +    E 
Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRG--ET 355

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472
             G  + +   DL T++ + G KR  +  D     +  Y +    + + +   +     
Sbjct: 356 DTGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTAEDRHQVDDERWNVFTRDD 413


>gi|160884785|ref|ZP_02065788.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483]
 gi|156109820|gb|EDO11565.1| hypothetical protein BACOVA_02775 [Bacteroides ovatus ATCC 8483]
          Length = 490

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 92/543 (16%), Positives = 179/543 (32%), Gaps = 89/543 (16%)

Query: 18  NAEDLW----GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            A        G          +L    L+           +  E Y +      D     
Sbjct: 8   IANKARQILGGTLSANQCRDYVLALLFLK-----------SASEYYKSNDSFQQDDNKL- 55

Query: 74  KVAGYSFYNTSEYSL--STLGSTNTRNNLESYI------ASFSDNAKAIFEDFDFSSTI- 124
                     S +      L S +    +   +        F      I +  DF S I 
Sbjct: 56  -TLHLLVSERSSFDYLCKALDSPDLGRLINMALYELEQANGFVTEGYEINKAIDFESNIL 114

Query: 125 -ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                ++  L  + + F  + L         + ++Y  L+  F  E  +   + + P +V
Sbjct: 115 GEANTRSSKLRGLLQLFQEVRLTDAIGQLIDVGDLYNQLLYIFAEEAGKKINNVLAPTEV 174

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           V L T L+         +       L DP  G+G  L +    +   G+          +
Sbjct: 175 VSLITKLI---------DGNRKNACLCDPASGSGTLLIEVGKKMGIRGTD--------IY 217

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNP 299
           GQE+    +A+    +++   +             G +L           K+F   +S P
Sbjct: 218 GQEVNWNLYALTKMNLMLNGFKGATFL-------WGDSLRSPKLLDHGGLKKFDIVVSVP 270

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF  KW  +      E  +    RF  G+P  S  +  ++ H+   L       G+A +V
Sbjct: 271 PFADKWASE------EAYDDFYRRFKYGIPPKSQVTWAYISHILASLRND----GQAVVV 320

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +    LF       ES+IR  ++E +L+EA++ LP++LF  T I+T + +      E  R
Sbjct: 321 VPVGVLFRNT----ESKIREQIIEYNLLEAVIELPSNLFHGTAISTAILVFRK---ERMR 373

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
            +   ++A   + S +        ++D    Q+ +IY     G+              + 
Sbjct: 374 TQTLFVDARKGYISNKGL----YKLSDKVLEQLPNIYKKFLIGE-------------EVG 416

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
             +     ++  +  +   + D+   K            +K  +++I       +++ + 
Sbjct: 417 GEKNGCPVYVATQDEIRHNKYDLKVIKYVEDKIERKEIDVKDALRKIDELEERLTYIDKQ 476

Query: 540 IKS 542
            K 
Sbjct: 477 FKD 479


>gi|218679450|ref|ZP_03527347.1| putative type I restriction enzyme HindVIIP M protein [Rhizobium
           etli CIAT 894]
          Length = 120

 Score =  194 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 55/120 (45%), Positives = 75/120 (62%)

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPD 613
                A ++A   +D  A    D +G   PD  L ++E VP  E  + Y  REV+P VPD
Sbjct: 1   APVRKAILSALSERDESAAICLDGDGRPEPDPELRDHELVPLKEDWKSYVAREVTPFVPD 60

Query: 614 AYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           A++D+ + D+ DK +GRVGYEINFNR+FY+Y   R L +IDAELK +E  IA LL+E+A 
Sbjct: 61  AWVDETYRDDADKGVGRVGYEINFNRYFYRYVAPRPLAEIDAELKTLETDIADLLKEVAG 120


>gi|318042339|ref|ZP_07974295.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Synechococcus sp. CB0101]
          Length = 570

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/458 (18%), Positives = 153/458 (33%), Gaps = 71/458 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF--------VKVAGYSFYNTS--EYS 87
              L+ L+  LE  R+A          + I  E +            G   +N S     
Sbjct: 114 LLFLKYLDG-LEDDRAA-MALLEGRSYTPILEEPYRWNSWAAPKNADGQLDHNASLTGDD 171

Query: 88  LSTLGSTNTRNNLESYIASFS-DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           L    +      LE +    S  N         F     ++     L +I     G+   
Sbjct: 172 LRDFVNQRLFPYLEQFKQRASGPNTIEYKIGEIFGEIRNKISSGYNLREIIDVIDGLRFR 231

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   +S +YE  I+R G        ++ TPR ++     ++          +P + 
Sbjct: 232 -SQAEKHELSMLYEEKIKRMG-NAGRNGGEYYTPRPLIRAIVQVI----------NPQIG 279

Query: 207 RTLYDPTCGTGGFLTDAMNHVAD--------CGSHHKIPPILVPHGQELEPETHAVCVAG 258
            T+YDP  G+ GFL +A  ++                        G+E +   + + +  
Sbjct: 280 ETVYDPAVGSAGFLCEAFEYMRKGGASGRELSTEDLDTLQTRTFTGKEKKSLAYVIAIMN 339

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +E       +  I   +TL++   D+    RF   L+NPPFG    K+       
Sbjct: 340 MILHGIE-------APKIIHANTLTENLSDVQERDRFDVILANPPFGGSERKEVQQNFPI 392

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         +  + + LFL H    L      GGRA +V+ ++ L N    S   
Sbjct: 393 --------------RSGETAFLFLQHFIRMLR----AGGRAGVVIKNTLLSNSDNAS--V 432

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LLE   +  ++  P   F    + T +         ++    QL          R
Sbjct: 433 ALRQKLLEECNLHTVLDCPGGTFQGAGVKTVVLFFEKGAPTQKVWFYQL-------DPGR 485

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           N G K   ++D    + +++  +  +   S  LD    
Sbjct: 486 NLG-KTNPLHDRDLAEFVELQKNFADSPKSWSLDVADV 522


>gi|212691149|ref|ZP_03299277.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855]
 gi|237712399|ref|ZP_04542880.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           9_1_42FAA]
 gi|212666381|gb|EEB26953.1| hypothetical protein BACDOR_00639 [Bacteroides dorei DSM 17855]
 gi|229453720|gb|EEO59441.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           9_1_42FAA]
          Length = 472

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 97/552 (17%), Positives = 179/552 (32%), Gaps = 93/552 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M     +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   +       + + G       E +L  L     ++NL   I          
Sbjct: 51  MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +          +P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             +  +   ++   +    + +          +        +  Y +R     +   +  
Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVETYDAE--NNP 405

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              +R+  V   L            +   DITW K      +  L  L   ++       
Sbjct: 406 QGRWRKYPVDEIL---------ARDKTSLDITWIKQGGEVDNRSLAELMADIKDKSQTIS 456

Query: 532 AESFVKESIKSN 543
           A     E + +N
Sbjct: 457 AAVVELEKLLAN 468


>gi|270719566|ref|ZP_06223326.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus
           influenzae HK1212]
 gi|270315414|gb|EFA27679.1| type I site-specific deoxyribonuclease, HsdM family [Haemophilus
           influenzae HK1212]
          Length = 219

 Score =  194 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 24/214 (11%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
              L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6   HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKDAVLEEMRFQKEEL 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------NNLESYIASFSDNAKAIFE 116
             + +D     K+ G+ FYNTS+++L +L  T +        N E Y+  FS N   I  
Sbjct: 66  AFTELDDLPLKKITGHVFYNTSKWTLKSLYQTASNTPQYMLANFEEYLDGFSTNVHEIIN 125

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTV-----------PDRVMSNIYEHLI 163
            F     I  +    +L  + + F    I L P               +  M  ++E LI
Sbjct: 126 CFKLREQIRHMSHKNVLLSVLEKFVSPYINLTPKEQQDPEGNKLPALTNLGMGYVFEELI 185

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           R+F  E +E A +  TPR+V+ L T L+ DP   
Sbjct: 186 RKFNEENNEEAGEHFTPREVIELMTHLVFDPLKD 219


>gi|319765923|ref|YP_004131424.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
 gi|317110789|gb|ADU93281.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           sp. Y412MC52]
          Length = 493

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 159/479 (33%), Gaps = 86/479 (17%)

Query: 10  SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
            +   +W     L  D   +  +   +     L+                          
Sbjct: 5   EIVQKLWNLCNVLRDDGITYHQYVTELTYLLFLK-------------------------- 38

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               +K  G  +     Y    L   +    +   +  + +       +     ++   +
Sbjct: 39  ---MMKETGQEYIIPEPYRWDVLAKKDGIELKTYYQQLLMALGQEENELLRQI-YTDATS 94

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            + +   L KI +    ++ +        +  +YE L+ +  SE+  GA  + TPR ++ 
Sbjct: 95  NIREPKNLEKIIRTIDALDWYNAKEE--GLGALYEGLLEKNASELKSGAGQYFTPRVLID 152

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIP 237
           +   L+           P      +DP  G  GF+  A  HV               +  
Sbjct: 153 VIVELV----------DPKPGERCHDPAAGMFGFMIAASRHVRAKTDDYFDLSEEEIRFQ 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G EL  +TH + V   L+  +  D        I  G TLS      K +   L+
Sbjct: 203 KYKAFSGVELVRDTHRLAVMNALLHDVHGD--------ILLGDTLSPLGEQLKGYDVILT 254

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K   ++              F       S+  + FL H+   L        RAA
Sbjct: 255 NPPFGTKKGGERATRTD---------FTFMT---SNKQLNFLQHIYRALRPNGKA--RAA 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +    E 
Sbjct: 301 VVVPDNVLFEGGVG---ADIRRDLMDKCNVHTILRLPTGIFYAQGVKTNVLFFTRG--ET 355

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS----RENGKFSRMLDYRT 472
             G  + +   DL T++ + G KR  +  D     +  Y +    + + +   +     
Sbjct: 356 DTGNTKEVWVYDLRTNMPSFG-KRNPLTKDHFAGFMKAYTAEDRHQVDDERWNVFTRDD 413


>gi|260579046|ref|ZP_05846945.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium jeikeium ATCC 43734]
 gi|300933495|ref|ZP_07148751.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
 gi|258602797|gb|EEW16075.1| type I restriction-modification system methyltransferase subunit
           [Corynebacterium jeikeium ATCC 43734]
          Length = 242

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/250 (28%), Positives = 109/250 (43%), Gaps = 13/250 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++         + ++  A  L G ++   +  VI+P T++RRLECALE T+ AV   Y 
Sbjct: 1   MSQIDVKKQ--VDHVFSIANSLRGTYQADKYKDVIIPMTIIRRLECALEETKDAVCTVYE 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NTRNNLESYIASFSDNAKAIFED- 117
               +        +V+GY FYNTS Y+L  L +       NL++Y+ +FS N + I +  
Sbjct: 59  QDDST--PDAILKQVSGYPFYNTSRYTLEKLLAEPAQLHRNLKTYLEAFSPNIRMILDKN 116

Query: 118 --FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
              DF + I ++ K   L  + + FS ++L P+ + +  M  ++E LIRRF    +  A 
Sbjct: 117 EGLDFFTQIDKMHKGSRLTGVVRKFSELDLAPERINNVAMGYMFEELIRRFSE--NAEAG 174

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           D  TPR+VV L   L L          PG    + D   G             D     +
Sbjct: 175 DHYTPREVVRLLVRLGLAEGSEDLF-EPGKNINVADQ-MGDCSSALSGWLVEHDPCVRQR 232

Query: 236 IPPILVPHGQ 245
                    Q
Sbjct: 233 GTFAWRASCQ 242


>gi|319950292|ref|ZP_08024212.1| N-6 DNA methylase [Dietzia cinnamea P4]
 gi|319436048|gb|EFV91248.1| N-6 DNA methylase [Dietzia cinnamea P4]
          Length = 504

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 165/479 (34%), Gaps = 67/479 (13%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L + +W     L  D     ++ + +     L+                           
Sbjct: 7   LVDKLWSYCNVLRDDGVGVIEYTEQLTYLLFLKM------------------------AH 42

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGS---TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           E   +          EYS   L               +   +   + +     F     R
Sbjct: 43  ERATRPLKPLQIVPEEYSWQRLVDAQGDELEFEYTRMLTGLAKE-RGVVGTI-FRKAQNR 100

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++    L +I  +    E    +  D    + YE L+ +   +   GA  + TPR ++  
Sbjct: 101 IQDPAKLRRIVVDLIDKENWSQSGTDIQ-GDAYESLLAKGAQDKGSGAGQYFTPRPLIQA 159

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---- 242
              ++           P +  T+ DP CGTGGFL  A  H A   S              
Sbjct: 160 IVDVI----------QPTIEDTVVDPACGTGGFLLVAHEHAAGTASSMTPTQRHKLQEKF 209

Query: 243 -HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G EL   T  +    +L+  + +     L   I+    L  D   G R+   L+NPPF
Sbjct: 210 ATGFELVDGTARLAAMNVLLHGMGTANGESL---IEVRDALVAD--PGHRWSVVLTNPPF 264

Query: 302 GKKWEKDKDAVE--KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           G+K      A +  +  ++ E+ R    +   S+  + F+ H+   L    +  GRAA+V
Sbjct: 265 GRKSSVTMVAADGSQTREDREIERQDF-VATTSNKQLNFVQHIMTIL----DTNGRAAVV 319

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L  + LF G A  GE+ IRR LL++  +  ++ LPT +F+   +   +     +      
Sbjct: 320 LPDNVLFEGGA--GET-IRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFFDKKVARPGT 376

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY-----VSRENGKFSRMLDYRTF 473
              + +   DL T+ ++   K+  +      + ++ Y       R   +  +   Y   
Sbjct: 377 PWTEKLWVYDLRTN-KHFTLKQNPLRRSDLDEFVEAYLPGRHHERTESERWKPFTYDEL 434


>gi|153808177|ref|ZP_01960845.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185]
 gi|149129080|gb|EDM20296.1| hypothetical protein BACCAC_02463 [Bacteroides caccae ATCC 43185]
          Length = 472

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 156/471 (33%), Gaps = 82/471 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M     +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNNATEQSLTKKVWSLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   S       + + G       E +L  L     ++NL   I          
Sbjct: 51  MFGE-ESAIPSGYQWADLIALDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +           P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAMVDCI----------HPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGVGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLTLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   A  GE+ IR+ LL +  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGA--GET-IRKRLLRDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             +  +   ++   +    + +          +        +  Y +R   
Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVET 398


>gi|169347006|ref|ZP_02865948.1| 3D domain protein [Clostridium perfringens C str. JGS1495]
 gi|169296689|gb|EDS78818.1| 3D domain protein [Clostridium perfringens C str. JGS1495]
          Length = 487

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 83/472 (17%), Positives = 175/472 (37%), Gaps = 61/472 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     T++      L F    I  ++  ++    F N  +         N  
Sbjct: 35  LLFIKGLDDV--ETKNEAEAVLLGFEPERIFSDNEQELRWSKFSNEGDAQKMYDIVQNKV 92

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +    ++A            I ++    +L KI    +GIE       +    +
Sbjct: 93  FPFIKNLHGNKESAY----AKYMGDAIFKIPTPLMLSKIVDGINGIEF---KKENDTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +     +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKLS--SAGTNGQFRTPRHIIDMIVKLM----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  +         +     + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     ++F   L+NPPF  K   D +AV  E            + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKEKFTLVLANPPF--KGSLDYEAVSAELLK---------VTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G ++IR+ ++EN  +EAI
Sbjct: 296 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHNDIRKEIVENHKLEAI 349

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   +     KV   +   +     +   KR  + ++  
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKTGSG-GTDKVWFYD---MKADGFSLDDKRNPVEENDI 405

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             I++ + + EN +  +  +   F    + V       + L       +E +
Sbjct: 406 DDIIERFSNLENEEDRKRTEQSFF----VPVEEIRENGYDLSINKYKEIEYE 453


>gi|260776598|ref|ZP_05885493.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607821|gb|EEX34086.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio coralliilyticus ATCC BAA-450]
          Length = 510

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 91/469 (19%), Positives = 162/469 (34%), Gaps = 84/469 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S   L   +W     L  D     + + +   T L  L                      
Sbjct: 2   STQDLVAKLWNLCNLLRDDGVS--YHEYMNELTFLVFL-------------------KMA 40

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFD 119
            + E+ V     +      Y  S L + +    LE Y           S  A+ I+ +  
Sbjct: 41  QETETEVDTKSGTVNIPEGYRWSDLKAVDEEIKLEEYKKLLIHLGSHGSLIAQRIYSN-- 98

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            ++TI R      L+ +      ++ +   V +  + ++YE L+     EV  GA  + T
Sbjct: 99  -ANTIIR--NTATLHSLVDQIDKLDWY--QVKNEGLGDMYEGLLEINAQEVKSGAGQYFT 153

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH-------VADCG- 231
           PR +++    L+           P +   + DP  GTGGFL  A ++       + +   
Sbjct: 154 PRVLINAMVELM----------KPTLKDVIVDPAAGTGGFLVSANHYMYPDKKKIKELSS 203

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             +K        G E  P T  + +  M++  +  +   D    +  G TLS +      
Sbjct: 204 KDYKKYQSGTYFGMEFVPMTRRLAMMNMMLHDIAVN---DDKSGVLFGDTLSNEGKDLPD 260

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK-LELPP 350
               L+NPPFG K        +                   +  + FL  + +K L+   
Sbjct: 261 ATLILANPPFGNKMGGGVPTRDDLEHY------------TGNKQLAFLHLMYHKILKP-- 306

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA++L  + LF    G     IR  L++   +  I+ LPT +F+   + T +   
Sbjct: 307 --GGRAAVILPDNALFESGIG---KTIRSDLMDKCNLHTILRLPTGIFYAAGVKTNILFF 361

Query: 411 SN----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           S     +K + +   V + +      ++   G KR  +      +    
Sbjct: 362 SKPSDVKKDKGQTKNVWVYDLR---ANMPKFG-KRTTLIPSHFDEFYKA 406


>gi|237726589|ref|ZP_04557070.1| type I restriction enzyme StySJI M protein [Bacteroides sp. D4]
 gi|265752107|ref|ZP_06087900.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           3_1_33FAA]
 gi|229435115|gb|EEO45192.1| type I restriction enzyme StySJI M protein [Bacteroides dorei
           5_1_36/D4]
 gi|263236899|gb|EEZ22369.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           3_1_33FAA]
          Length = 472

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 84/471 (17%), Positives = 156/471 (33%), Gaps = 82/471 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M     +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   +       + + G       E +L  L     ++NL   I          
Sbjct: 51  MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +          +P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             +  +   ++   +    + +          +        +  Y +R   
Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVET 398


>gi|86146744|ref|ZP_01065064.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
 gi|85835394|gb|EAQ53532.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
          Length = 340

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 32/265 (12%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 +YDP CG+GG    ++  + +     K    +  +GQEL   T+ +    + IR
Sbjct: 3   EPFQGKIYDPACGSGGMFVQSLKFIKEHEGRTK---DIAIYGQELTSTTYKLAKMNLAIR 59

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            L  +         +   T   D     +  Y ++NPPF             E +  +  
Sbjct: 60  GLSGNLGE------RAADTFFADQHKDLKADYIMANPPFNL------KGWRNEAELTDDA 107

Query: 323 RF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF G   P   + +  +++H+ +KL      G   A   + S      + SGE EIR+ L
Sbjct: 108 RFAGYRTPPTGNANYGWILHMLSKLSETGTAGFVLA---NGSM---SSSTSGEGEIRQQL 161

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR-------GKVQLINATDLWTSI 434
           +END +E ++ALP  LFF T I   +W ++  KTE           +   I+A ++   I
Sbjct: 162 IENDRVECMIALPGQLFFTTQIPVCIWFITKDKTENTTKGFRNRQKETLFIDAREMGAMI 221

Query: 435 RNEGKKRRIINDDQRRQILDIYVSR 459
                  + +  D    I D Y + 
Sbjct: 222 SRT---NKELTKDDIALIADTYHAW 243


>gi|325973636|ref|YP_004250700.1| type I restriction-modification system, N-6 DNA methylase family
           protein [Mycoplasma suis str. Illinois]
 gi|323652238|gb|ADX98320.1| type I restriction-modification system, N-6 DNA Methylase family
           protein [Mycoplasma suis str. Illinois]
          Length = 613

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 93/587 (15%), Positives = 192/587 (32%), Gaps = 86/587 (14%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +L + +WK  ++L      K ++F   +L    L+ ++   +  +  + E+Y    G  +
Sbjct: 3   TLEHRLWKACDNLRANSSLKESEFCMPVLGIIFLKYMDARYKKAKKKINEEYYQREGIIL 62

Query: 68  DLES-------FVKVAGYSFYN--------TSEYSLSTLGSTNTR------NNLESYIAS 106
             E         + +   + YN         S   L  +            +N  + IA+
Sbjct: 63  PEEEDDYKRLGVIMLPEGAQYNWILSLPEDISSKELKDVNGQPLNSLGEVLDNAMTLIAT 122

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            ++  + I   F   + I       +L  + + F   ++      D  + +IYE+ + +F
Sbjct: 123 KTEKLRGIL--FGEYNRIPD----KILKGLLEIFDHEDIT---WEDDKLGSIYEYFLEQF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S V      F TP  +V++   +L                T+ DP CG+GG       +
Sbjct: 174 ASYVKGEEGIFFTPPSLVNIIVNIL-----------EPTQGTVLDPACGSGGMFIAIKQY 222

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +     +      +   G E       +C+  + I  L S             ++   D 
Sbjct: 223 MDKHNLNCNEH--ITFWGHEKVEHNARLCLMNIFIHHLGSGKIAGGDD----ANSYYNDH 276

Query: 287 FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLM 340
           +    +  Y L+NPPF       + A          GR   GLP++S     + + L++ 
Sbjct: 277 WGLNGKCDYVLANPPFNIVGVNAEAAEAA-------GRLPFGLPQVSKLEIKNANFLWIS 329

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           +  + L      G     +  S  +        + EIR  ++E   I+ ++ +    F  
Sbjct: 330 YFYSYLNSTGKAGFVMPSITMSGTV--------DKEIRSKVVETKHIDLLINVAPKFFKS 381

Query: 401 T-NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                  LW  + +K +E   KV  I+A++ +  +                  + +Y  +
Sbjct: 382 KFKGDCCLWFFNKQKPQEYENKVLFIDASNYYVPVDAGHNTWNEWQSKNLISTVQLYRGQ 441

Query: 460 EN------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
                    ++   L        +  VL          K    +L  D  +   S  ++ 
Sbjct: 442 VEKYRELISEYKEKLRNYA---DKFSVLVEGDDYLKAFKDKKEQLIKDSEFELSSITNRK 498

Query: 514 FWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
             + + +   ++        SF      + E   +  K  +      
Sbjct: 499 EKMKLKQEWEEK------HNSFDNAITVAKEFHWIYSKFGEGEYKDI 539


>gi|108800737|ref|YP_640934.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119869876|ref|YP_939828.1| N-6 DNA methylase [Mycobacterium sp. KMS]
 gi|108771156|gb|ABG09878.1| N-6 DNA methylase [Mycobacterium sp. MCS]
 gi|119695965|gb|ABL93038.1| N-6 DNA methylase [Mycobacterium sp. KMS]
          Length = 429

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 83/360 (23%), Positives = 137/360 (38%), Gaps = 42/360 (11%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           + A L   I                 +  + YE L+ +  S+   GA  + TPRD++   
Sbjct: 38  DPAKLKRLIVDLIDKENWSASGTD--LKGDAYEELLAKGASDKGSGAGQYFTPRDLIRAI 95

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----- 242
             ++           P +  T+ DP CGTGGFL  A  HVA+                  
Sbjct: 96  VDVI----------DPSVADTVVDPACGTGGFLLVAHEHVAEEAGKLTPTQRNHLRDKFV 145

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G EL   T  +    +L+  +      D    I+    L  D   G+R+   LSNPPFG
Sbjct: 146 TGYELVDGTARLAAMNLLLHGI---GTADGPSLIEVRDALIAD--PGQRWSVVLSNPPFG 200

Query: 303 KKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           +K       A  +E ++         +   S+  + FL H+   L    +  GRAA+VL 
Sbjct: 201 RKSSLTMVGADGREARDDVEIERQDFVVTTSNKQLNFLQHIMTIL----DINGRAAVVLP 256

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            + LF G A  GE+ +RR LL++  +  ++ LPT +F+   +   +     R+  E+   
Sbjct: 257 DNVLFEGGA--GET-LRRKLLDDFDLHTMLRLPTGIFYAQGVKANVLFFDKRQANEQPWT 313

Query: 422 VQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY------VSRENGKFSRMLDYRTF 473
            +L     ++    N+    K+  +        +D Y        R   +  +   Y   
Sbjct: 314 SKL----WVYDLRTNQHFTLKQNRLRRHHLDGFVDSYLTGKPREERVESERWKAFTYDDL 369


>gi|253569705|ref|ZP_04847114.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251840086|gb|EES68168.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 472

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 96/547 (17%), Positives = 178/547 (32%), Gaps = 98/547 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M   + +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNSSTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   +       +   G       E +L  L      +NL   I          
Sbjct: 51  MFGE-ESAIPTGYQWADLIAFDGLDLVKQYEETLKLLSE---LDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +          +P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS------ 465
             +  +   ++   +    + +          +        +  Y +R     +      
Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVETYDAENNPQG 407

Query: 466 -------RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
                    +  R      I  ++P      +D   LA L ADI  +  +       L+ 
Sbjct: 408 RWRKYPVDEIIARDKTSLDITWIKPGG---EVDDRSLAELMADIKDKSQTISRAVTELEK 464

Query: 519 LKPMMQQ 525
           L   +++
Sbjct: 465 LLANIEE 471


>gi|298483407|ref|ZP_07001584.1| type I restriction-modification system, M subunit [Bacteroides sp.
           D22]
 gi|299148888|ref|ZP_07041950.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_23]
 gi|298270355|gb|EFI11939.1| type I restriction-modification system, M subunit [Bacteroides sp.
           D22]
 gi|298513649|gb|EFI37536.1| type I restriction-modification system, M subunit [Bacteroides sp.
           3_1_23]
          Length = 476

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 154/467 (32%), Gaps = 82/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M +   +   L   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MAKSNSNEQGLTKKVWTLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DDENVK 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           + ++  +        E+ +++ G       E +L  L     ++NL   I          
Sbjct: 51  LLDE-ESAIPEGYRWENLIELDGLDLIGQYENTLKILSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+    +  +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMINEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++     +            P +  T+ DP CGTGGFL  A +++       
Sbjct: 150 GQYFTPRSLISAMVDV----------TRPQIGETVCDPACGTGGFLLAAYDYMKKQSQDK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 GKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP-----IICQDSLEKE--PDIL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VNVILANPPFGTRPSGSVDINRSDFYVE-----------TKNNQLNFLQHIMLSLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF G AG     IR+ LL    +  I+ LPT +F+   +   +   +
Sbjct: 299 -GGRAAVVLPDNVLFEGGAG---EVIRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFT 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
                 R   +   +    + +          +        +  Y +
Sbjct: 355 KG---SRTKDIWFYD----YRTDVKHTLATNPMQRHHLDDFVSCYHA 394


>gi|325990089|ref|YP_004249788.1| type I restriction-modification system, modification subunit
           [Mycoplasma suis KI3806]
 gi|323575174|emb|CBZ40836.1| Type I restriction-modification system, modification subunit
           [Mycoplasma suis]
          Length = 613

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/585 (16%), Positives = 193/585 (32%), Gaps = 82/585 (14%)

Query: 10  SLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           +L + +WK  ++L      K ++F   +L    L+ ++   +  +  + E+Y    G  +
Sbjct: 3   TLEHRLWKACDNLRANSSLKESEFCMPVLGIIFLKYMDARYKKAKKKINEEYYQREGIIL 62

Query: 68  DLES-------FVKVAGYSFYN--------TSEYSLSTLGSTNTR------NNLESYIAS 106
             E         + +   + YN         S   L  +            +N  + IA+
Sbjct: 63  PEEEDDYKRLGVIMLPEGAQYNWILSLPEDISSKELKDVNGQPLNSLGEVLDNAMTLIAT 122

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            ++  + I   F   + I       +L  + + F   ++      D  + +IYE+ + +F
Sbjct: 123 KTEKLRGIL--FGEYNRIPD----KILKGLLEIFDHEDIT---WEDDKLGSIYEYFLEQF 173

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S V      F TP  +V++   +L                T+ DP CG+GG       +
Sbjct: 174 ASYVKGEEGIFFTPPSLVNMIVNIL-----------EPTQGTVLDPACGSGGMFIAIKQY 222

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +     +      +   G E       +C+  + I  L S             ++   D 
Sbjct: 223 MDKHNLNCNEH--ITFWGHEKVEHNARLCLMNIFIHHLGSGKIAGGDD----ANSYYNDH 276

Query: 287 FT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-----DGSMLFLM 340
           +    +  Y L+NPPF       + A          GR   GLP++S     + + L++ 
Sbjct: 277 WGLNGKCDYVLANPPFNIVGVNAEAAEAA-------GRLPFGLPQVSKLEIKNSNFLWIS 329

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           +  + L      G     +  S  +        + EIR  ++E   I+ ++ +    F  
Sbjct: 330 YFYSYLNSTGKAGFVMPSITMSGTV--------DKEIRSKVVETKHIDLLINVAPKFFKS 381

Query: 401 T-NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                  LW  + +K +E   KV  I+A++ +  +                  + +Y  +
Sbjct: 382 KFKGDCCLWFFNKQKPKEYENKVLFIDASNYYVPVDAGHNTWNEWQSKNLISTVQLYRGQ 441

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
                  + +Y+         LR     F +   G   L+A    ++       F L  +
Sbjct: 442 VEKYIELISEYKEK-------LRNYSDKFSVLVEGDDYLKAFKEKKEQLIKDSEFELSSI 494

Query: 520 KPMMQQIYPYGWAES----FVKESIKSNEAKTLKVKASKSFIVAF 560
               +++      E     F      + E   +  K  +      
Sbjct: 495 TNRKEKMKLKQEWEEKHNSFDDAITVAKEFHWIYSKFGEGEYKDI 539


>gi|257452212|ref|ZP_05617511.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
 gi|317058755|ref|ZP_07923240.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
 gi|313684431|gb|EFS21266.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           3_1_5R]
          Length = 475

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/498 (18%), Positives = 175/498 (35%), Gaps = 86/498 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   + ++   +     L+            + E Y      
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAY------ 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               ++ V   G +  N  + +L  LG    +                I     + +   
Sbjct: 56  --RWKTLVAYEGIALKNHYQQALLDLGKELGQ--------------LGII----YRNAQT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + TPR ++ 
Sbjct: 96  RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234
               ++           P +  T+YDP  GT GF+ +A  ++ +    +           
Sbjct: 154 AIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRNISQDYYGTAENPISEE 203

Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                  V    EL  +TH +     L+  +  +          QG TLS+       F 
Sbjct: 204 LSQKYKKVFSACELVQDTHRLGSMNALLHGIGGNFL--------QGDTLSEFGKQFSHFD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K   ++   +              +   S+  + FL  +   L +     
Sbjct: 256 IILSNPPFGTKKGGERATRDD------------LVYATSNKQLNFLEVIYRSLNVTGKA- 302

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAA+V+  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +  
Sbjct: 303 -RAAVVVPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            ++    K   I   DL T++ + G K   ++ +   +    +  RE  +          
Sbjct: 359 ISDTNNTK--EIWYYDLRTNMPSFG-KTNPLSKEHFEEFERSFEKREEKEILERW----- 410

Query: 474 GYRRIKVLRPLRMSFILD 491
               + +   ++  + LD
Sbjct: 411 --TLVSMEEIMKKEYSLD 426


>gi|150006642|ref|YP_001301386.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|294775332|ref|ZP_06740854.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|149935066|gb|ABR41764.1| type I restriction enzyme StySJI M protein [Bacteroides vulgatus
           ATCC 8482]
 gi|294450789|gb|EFG19267.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 472

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/546 (17%), Positives = 180/546 (32%), Gaps = 96/546 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M     +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   +       + + G       E +L  L     ++NL   I          
Sbjct: 51  MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +          +P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAIVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             +  +   ++   +    + +          +        +  Y +R     +   +  
Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVETYDAE--NNP 405

Query: 472 TFGYRRIKVLRPL------------RMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              +R+  V   L            +    +D   LA L ADI  +  +       L+ L
Sbjct: 406 QGRWRKYPVDEILTRDKTSLDITWIKQGGEVDNRSLAELMADIKDKSQTISAAVVELEKL 465

Query: 520 KPMMQQ 525
              +++
Sbjct: 466 LANIEE 471


>gi|288801958|ref|ZP_06407399.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica D18]
 gi|288335393|gb|EFC73827.1| type I restriction-modification system, M subunit [Prevotella
           melaninogenica D18]
          Length = 473

 Score =  192 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/527 (17%), Positives = 172/527 (32%), Gaps = 81/527 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M +   +  +L   +WK A  L G    +TD+   +     L+      +     V E+ 
Sbjct: 1   MAKNISTEQALTKEVWKLATTLSGQGIGYTDYVTQLTYLLFLKM-----DAENVEVLEEA 55

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            A            ++ G       E +L+ L     ++NL   I               
Sbjct: 56  SAI-PEEYRWGQLKELDGLDLIAQYEKTLNVLSK---QDNLIGTI--------------- 96

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+    +++K   L K+       +     +   V   IYE ++ + G +   GA  + T
Sbjct: 97  FTKAQNKIDKPVYLKKVITMIDEHQWL--EMDGDVKGAIYEGILEKNGQDKKSGAGQYFT 154

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238
           PR ++      L           P +  T+ DP CGTGGFL  A +++            
Sbjct: 155 PRPLIQAMIDCL----------QPKIGETVCDPACGTGGFLLAAYDYMKGQSQDKGKLDF 204

Query: 239 --ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 HG +  P    +    + +  + +D        I    +L K+          L
Sbjct: 205 LNNKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IACEDSLEKE--PETLVDVIL 257

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG++     D    +                 +  + FL H+   L+     GGRA
Sbjct: 258 ANPPFGERTAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GGRA 302

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+V+    LF   A      +R+ LL +  +  I+ LPT +F+   +   +   +  +  
Sbjct: 303 AVVIPDDILFKDGAHEI---VRKKLLTDFNLHTILRLPTGIFYANGVKANVLFFTKGQPT 359

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR 476
           +    +   +    + +          +        +  Y +    +           +R
Sbjct: 360 K---DIWFYD----YRTNVKHTLVTTKLQRHHLDDFVACYNAATRTETYNEETNPAGRWR 412

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +      L            +   DITW K     + F LD L   +
Sbjct: 413 KYAADDIL---------ARDKTSLDITWIKAGGAEEQFTLDELMTNI 450


>gi|257465993|ref|ZP_05630304.1| Type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917149|ref|ZP_07913389.1| type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691024|gb|EFS27859.1| type I restriction enzyme StySPI M protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 475

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 93/498 (18%), Positives = 175/498 (35%), Gaps = 86/498 (17%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   + ++   +     L+            + E Y      
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAY------ 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               ++ V   G +  N  + +L  LG    +                I     + +   
Sbjct: 56  --RWKTLVAYEGIALKNHYQQALLDLGKELGQ--------------LGII----YRNAQT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + TPR ++ 
Sbjct: 96  RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234
               ++           P +  T+YDP  GT GF+ +A  ++ +    +           
Sbjct: 154 AIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRNISQDYYGTAENPISEE 203

Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                  V    EL  +TH +     L+  +  +          QG TLS+       F 
Sbjct: 204 LSQKYKKVFSACELVQDTHRLGSMNALLHGIGGNFL--------QGDTLSEFGKQFSHFD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K   ++   +              +   S+  + FL  +   L +     
Sbjct: 256 IILSNPPFGTKKGGERATRDD------------LVYATSNKQLNFLEVIYRSLNVTGKA- 302

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAA+V+  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +  
Sbjct: 303 -RAAVVVPDNVLFEGGVG---KEIRQDLLNKCDVHTILRLPTGIFYSQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            ++    K   I   DL T++ + G K   ++ +   +    +  RE  +          
Sbjct: 359 TSDTNNTK--EIWYYDLRTNMPSFG-KTNPLSKEHFEEFERSFEKREEKETLERW----- 410

Query: 474 GYRRIKVLRPLRMSFILD 491
               + +   ++  + LD
Sbjct: 411 --TLVSMEEIMKKDYSLD 426


>gi|29349926|ref|NP_813429.1| putative type I restriction enzyme StySJI M protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|81842076|sp|Q89Z59|T1M_BACTN RecName: Full=Probable type I restriction enzyme BthVORF4518P M
           protein; Short=M.BthVORF4518P
 gi|29341837|gb|AAO79623.1| putative type I restriction enzyme M.BthVORF4518P [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 472

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/552 (17%), Positives = 176/552 (31%), Gaps = 93/552 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M   + +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNSSTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   +       +   G       E +L  L      +NL   I          
Sbjct: 51  MFGE-ESAIPTGYQWADLIAFDGLDLVKQYEETLKLLSE---LDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +          +P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAMVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             +  +   ++   +    + +          +        +  Y +R   +     +  
Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNR--VEIYDAENNP 405

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              +R+  V   +            +   DITW K         L  L   ++       
Sbjct: 406 QGRWRKYPVDEII---------ARDKTSLDITWIKPGGEVDDRSLAELMADIKDKSQTIS 456

Query: 532 AESFVKESIKSN 543
                 E + +N
Sbjct: 457 RAVTELEKLLAN 468


>gi|312869822|ref|ZP_07729964.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3]
 gi|311094668|gb|EFQ52970.1| N-6 DNA Methylase [Lactobacillus oris PB013-T2-3]
          Length = 484

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/550 (16%), Positives = 184/550 (33%), Gaps = 86/550 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYL 60
              S   +   +WK ++ L        +   +   T    L+        ++    +   
Sbjct: 1   MVMSNQEIVQQLWKESDVLRD--DGVTYQDYVTELTYILFLKM-------SKE---QNEE 48

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A        +S ++  G    N     L  LG+    N         S    AI     +
Sbjct: 49  AEIPEKYRWDSLLQYEGLELMNFYRQLLLDLGNPQKTN---------SPRINAI-----Y 94

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            +    +++   L KI  +  G++          +  +YE L+ +  +E   GA  + TP
Sbjct: 95  DNASTSIDEPANLEKIIHDIDGLDWFSARQE--GLGALYEGLLEKNANETKSGAGQYFTP 152

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------GS 232
           R ++++   +            P +   L DP  GT GF+  A +++++           
Sbjct: 153 RPLINMMVRM----------TKPQVGERLNDPAAGTFGFMVAANDYLSEQTDEFFDLSQE 202

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
             K        G EL P TH + +    +  ++            QG +LS      K F
Sbjct: 203 DRKFEKEEAFSGMELVPNTHRLALMNQYLHGMDGRLD--------QGDSLSAAGKWMKNF 254

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPFG K   ++   +                + S+  + FL  + N L+   + 
Sbjct: 255 DVVLTNPPFGTKKGGERATRDD------------LTYETSNKQLNFLQIIYNSLKTDGH- 301

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            GRAA+V+  + LF   A      IR+ LL    +  I+ LPT +F+   + T +   + 
Sbjct: 302 -GRAAVVVPDNVLF---ADGTGEAIRKDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTR 357

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---ENGKFSRMLD 469
                     + I   D+   +R  G KR  +N+    +   ++ +    +  +      
Sbjct: 358 G--ASDTDNTKEIWIYDMRHQMRTFG-KRNPLNEKDFAEFEKLFSADDLTKRKENWDKDK 414

Query: 470 YRTFGYRRIKVLRPLRMSFI------LDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                +R+  +   ++          +++       +            +   + +  + 
Sbjct: 415 NPNGRWRKFTIDEIMKRPNTSLDISWMNEEEEHDNRSLKEILSEMNDKSTAISEAIAELN 474

Query: 524 QQIYPYGWAE 533
           + +      +
Sbjct: 475 KALEGINDED 484


>gi|254470280|ref|ZP_05083684.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062]
 gi|211960591|gb|EEA95787.1| type I restriction enzyme StySPI M protein [Pseudovibrio sp. JE062]
          Length = 519

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/490 (18%), Positives = 167/490 (34%), Gaps = 89/490 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           +  S+   +W+    L        + + +  L     L+ +           +EK     
Sbjct: 2   NTNSIVQKLWRLCSVLRK--DGITYQQYVTELTYLLFLKMM---------QEKEKEEGAI 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLG-----------------STNTRNNLESYIAS 106
            S +     VK  G          L+TLG                  T       +Y   
Sbjct: 51  PSGMRWNDLVKTDGLPQLELYRDLLTTLGTTSSRLGKDDELLRKPHETAVDAEKATYKDG 110

Query: 107 --FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                  + IFE     ++   L     L K+      ++ +   +      ++YE L++
Sbjct: 111 KRIPKMVQDIFE-----NSATFLRDPVNLNKLVTEIDKLDWY--DIERDQFGDLYEGLLQ 163

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +   E  +GA  + TPR ++ +   L+           P     + DP  GTGGFL  A 
Sbjct: 164 KNAEETKKGAGQYFTPRVLIDVIVDLM----------QPQPGERIQDPATGTGGFLIAAD 213

Query: 225 NHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            ++               K       HG E   +T+ + +  + +   +       + +I
Sbjct: 214 RYMKARTDGYYDLGEEGAKFQKEQAFHGMENVRDTYRLLLMNLYLHDFD-------TSHI 266

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             G TLS      ++    L+NPPFG    K       E               +S   +
Sbjct: 267 LAGDTLSPKGEGMEKVDVILTNPPFGPAGGKPTRDDLSE------------TANVSSYQL 314

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ H    L+     GGRAAIV+  + LF    G     +R+ ++    +  I+ LPT 
Sbjct: 315 PFVEHCIRGLKP----GGRAAIVIPDNVLFEDGRG---KALRQKMMRECDVHTILRLPTG 367

Query: 397 LFFRTNIATYLWILSNRKTEE----RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +F+   + T +  L    T E    +  + + +   DL + +   G K   + ++   + 
Sbjct: 368 IFYAQGVKTNVIFLKKSTTVELASLKTDETKKLWVYDLRSQMPQFG-KTSPLTEEHFAEF 426

Query: 453 LDIYVSRENG 462
           +  Y +  NG
Sbjct: 427 VKAYGADANG 436


>gi|237721637|ref|ZP_04552118.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4]
 gi|229449433|gb|EEO55224.1| type I restriction enzyme StySJI M protein [Bacteroides sp. 2_2_4]
          Length = 476

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 153/467 (32%), Gaps = 82/467 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M +   +   L   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MAKSNSNEQGLTKKVWTLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DDENVK 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           + ++  +        E+ +++ G       E +L  L     ++NL   I          
Sbjct: 51  LLDE-ESAIPEGYRWENLIELDGLDLIGQYENTLKILSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+    +  +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMINEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++     +            P +  T+ DP CGTGGFL  A +++       
Sbjct: 150 GQYFTPRSLISAMVDV----------TRPQIGETVCDPACGTGGFLLAAYDYMKKQSQDK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 GKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP-----IICQDSLEKE--PDIL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VNVILANPPFGTRPSGSVDINRSDFYVE-----------TKNNQLNFLQHIMLSLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF G AG     IR+ LL    +  I+ LPT +F+   +   +   +
Sbjct: 299 -GGRAAVVLPDNVLFEGGAG---EVIRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFT 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
                     +   +    + +          +        +  Y +
Sbjct: 355 KG---SGTKDIWFYD----YRTDVKHTLATNPMQRHHLDDFVSCYHT 394


>gi|254881455|ref|ZP_05254165.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           4_3_47FAA]
 gi|319642841|ref|ZP_07997479.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A]
 gi|254834248|gb|EET14557.1| type I restriction enzyme StySJI M protein [Bacteroides sp.
           4_3_47FAA]
 gi|317385585|gb|EFV66526.1| type I restriction enzyme BthV [Bacteroides sp. 3_1_40A]
          Length = 472

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/471 (18%), Positives = 158/471 (33%), Gaps = 82/471 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M     +  SL   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MATNNTTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DAENVE 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           +  +  +   +       + + G       E +L  L     ++NL   I          
Sbjct: 51  MFGE-ESAIPTGYQWADLIVLDGLDLVKQYEETLKLLSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+       +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++      +          +P M  T+ DP CGTGGFL  A +++    +  
Sbjct: 150 GQYFTPRPLIQAVVDCI----------NPQMGETVCDPACGTGGFLLTAYDYMKGQSASK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +          HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 EKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP-----IVCEDSLEKE--PSTL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VDVILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF   A  GE+ IR+ LL++  +  I+ LPT +F+   +   +   S
Sbjct: 299 -GGRAAVVLPDNVLFEAGA--GET-IRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFS 354

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             +  +   ++   +    + +          +        +  Y +R   
Sbjct: 355 KGQPTK---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVET 398


>gi|189463332|ref|ZP_03012117.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136]
 gi|189429951|gb|EDU98935.1| hypothetical protein BACCOP_04049 [Bacteroides coprocola DSM 17136]
          Length = 477

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 155/464 (33%), Gaps = 76/464 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRSAVRE 57
           M     +  SL   +W  A  L           F   I   T L             + +
Sbjct: 1   MATNNATEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYL------------LLLK 43

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                     +  +     GY +       L +L   +     E  +   S+  + +   
Sbjct: 44  MDAENVEMFGEESAI--PTGYQW-----MDLISLDGLDLVKQYEDTLKQLSEQ-ENLIGT 95

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +   +++K   L K+       +     +   V   IYE ++ + G +   GA  +
Sbjct: 96  IYTKAQ-NKIDKPVYLKKVISMIDEEQWL--IMDGDVKGAIYESILEKNGQDKKSGAGQY 152

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++      +          +P M  T+ DP CGTGGFL  A +++ D  ++ +  
Sbjct: 153 FTPRPLIKAMVDCI----------APQMGETVCDPACGTGGFLLTAYDYMKDQSANKEKR 202

Query: 238 ---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   HG +  P    +    + +  + +D        I    +L K+         
Sbjct: 203 DFLRNKALHGVDNTPLVVTLASMNLYLHGVGTDRSP-----IVCEDSLEKE--PSTLVDV 255

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG +     D    +                 +  + FL H+   L+     GG
Sbjct: 256 ILANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHMMLMLKT----GG 300

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF   AG     IR+ LL++  +  I+ LPT +F+   +   +   +  +
Sbjct: 301 RAAVVLPDNVLFEAGAG---ETIRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFTKGQ 357

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             +   +V   +    + +          +        +  Y S
Sbjct: 358 PTK---EVWFYD----YRTDVKHTLATNKLERHHLDDFISCYNS 394


>gi|153000502|ref|YP_001366183.1| N-6 DNA methylase [Shewanella baltica OS185]
 gi|151365120|gb|ABS08120.1| N-6 DNA methylase [Shewanella baltica OS185]
          Length = 500

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/516 (18%), Positives = 184/516 (35%), Gaps = 55/516 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L    + I  E   +         +   L    +    
Sbjct: 33  LLFLKVFDA-----QEEQLELELDDYSTPIPSEFLWRNWAADNEGITGDELLDFVNDELF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +L++  A    N +       FS     ++   LL ++    + I+   D+    +  +
Sbjct: 88  PDLKNLTAPIDKNPRGYVVKAAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE +++   S  +  A +F TPR +     A+            P +  ++ DP CGTG
Sbjct: 147 LYEQILKDLQSAGN--AGEFYTPRAITKFIVAV----------TDPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV       +          HG E +   H +C   M++  +E         
Sbjct: 195 GFLACAFDHVKANYVKTADDHQTLQQQIHGVEKKQLPHLLCTTNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K      +     ++NPPFG     ++D +EK   +    R      + +D
Sbjct: 249 QIKHGNTLNKPLSSWDEDIDVIITNPPFGG---TEEDGIEKNFPSEFQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              LFL  +   L    NG GGRAA+VL    LF        ++I++ LLE   +  IV 
Sbjct: 300 ---LFLQLIIEVLAPATNGKGGRAAVVLPDGTLFGEGVK---TKIKKMLLEECNLHTIVR 353

Query: 393 LPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LP  +F  + T I T +   +     +    V        + +      K + +  ++  
Sbjct: 354 LPNGVFNPY-TGIKTNILFFTKGTPTKH---VWFYE--HPYPAGVKNYNKTKPMKFEEFE 407

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
             L  +    +G F+  ++       ++ +   +  ++ LD       E      +    
Sbjct: 408 TELVWWGDEADG-FAARVENE--QAWKVSIDDIIARNYNLDIKNPHVGEVVSHDPQALLA 464

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
             +     ++ +  Q+     A      +    E K
Sbjct: 465 DYAKQQADIQALRDQLKGILSAALSSPSAASKGEGK 500


>gi|282900511|ref|ZP_06308456.1| Type I restriction-modification system methyltransferase subunit
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194611|gb|EFA69563.1| Type I restriction-modification system methyltransferase subunit
           [Cylindrospermopsis raciborskii CS-505]
          Length = 187

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/177 (37%), Positives = 99/177 (55%), Gaps = 3/177 (1%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +     NFIW  A+ +   FK   +  VILPFT+LRRLEC L+PT+  V E Y  +   
Sbjct: 2   QNFGEKVNFIWSIADLIRDTFKRGKYQDVILPFTVLRRLECVLQPTKVEVLEAYDHYKNK 61

Query: 66  NIDLE-SFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
             +L+    K +G++FYN++ Y    L     +   NL+ YI SFS N + + E FDF +
Sbjct: 62  LDNLDSFLCKKSGFAFYNSAPYDFQKLLDDPKHLAANLKLYINSFSANMREVLEKFDFPN 121

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           TI +LE++ LL+ + + F  I+LHPD V +  M  I+E LIR+F   + E   +  T
Sbjct: 122 TIDKLEQSELLFLVTERFKNIDLHPDKVSNLEMGYIFEELIRKFNEALDENPGEHFT 178


>gi|148652933|ref|YP_001280026.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
 gi|148572017|gb|ABQ94076.1| N-6 DNA methylase [Psychrobacter sp. PRwf-1]
          Length = 302

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 104/319 (32%), Gaps = 39/319 (12%)

Query: 1   MTEFTGS------AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           MT  T S       + +   +W   +   G      +   IL    L+ L          
Sbjct: 1   MTSATSSMSTPISQSEINKAVWNACDTFRGVISADTYKDFILTMLFLKYLSDVYRDEHDT 60

Query: 55  VREKY--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           +  +Y         +  + FV   G SF++  E              L +   +  +  K
Sbjct: 61  LMAEYGDADLVKELMSNQRFVLPDGASFWDLYEQRHQPGNGQRIDEALHAIEEANGNKLK 120

Query: 113 AIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTV---PDRVMSNIYEHLIRRFG 167
            +F+D  F+        +K  LL  + ++F    L+          V+ N YE LI+ F 
Sbjct: 121 NVFQDISFNTDRLGNEKKKNELLRHLLEDFGKPMLNLSPSRVGSLDVIGNAYEFLIKHFA 180

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           ++    A +F TP +V  L   +L          +P     + DP CG+G  L       
Sbjct: 181 ADSGASAGEFYTPPEVSSLLATIL----------NPVAGDAICDPACGSGSLLIKCGAMA 230

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---- 283
                           GQE    T A+    M +   +       +  I+ G TL     
Sbjct: 231 RKNSGS----KNYELFGQEAIGSTWALAKMNMFLHGED-------NHRIEWGDTLRYPLL 279

Query: 284 -KDLFTGKRFHYCLSNPPF 301
             D     +F    +NPPF
Sbjct: 280 LDDKGHLLQFDVVTANPPF 298


>gi|240169988|ref|ZP_04748647.1| N-6 DNA methylase [Mycobacterium kansasii ATCC 12478]
          Length = 497

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 158/485 (32%), Gaps = 79/485 (16%)

Query: 11  LANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
           L + +W     L  D     ++ + +     L+                           
Sbjct: 7   LVDKLWAYCNVLRDDGVGVIEYTEQLTYLLFLKM------------------------AH 42

Query: 70  ESFVKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSD---NAKAIFEDFDFSST 123
           E   +          EYS   L     T+        +   +        IF      + 
Sbjct: 43  ERATRKLNPQQIVPDEYSWQKLLDAEGTDLEVQYTKILVGLAQQPGTLGTIFRKAQ--NR 100

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I    K   L  I                 +  + YE L+ +  S+   GA  + TPRD+
Sbjct: 101 IQDPAKLKRL--IVDLIDKENWSASGTD--LKGDAYEALLSKGASDKGSGAGQYFTPRDL 156

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP- 242
           +     ++           P     + DP CGTGGFL  A  H      +          
Sbjct: 157 IRAIVDVI----------DPTPADEVVDPACGTGGFLLVAHEHAVQGAENLTPTKRKHLR 206

Query: 243 ----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G EL   T  +    +L+  +      D    I+    L  D   G+R+   L+N
Sbjct: 207 DDFVTGYELVDATARLAAMNLLLHGI---GTADGDSLIEVRDALISD--PGRRWSVVLTN 261

Query: 299 PPFGKKWEKDKDAVEKE--HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           PPFG+K        +     ++ E+ R    +   S+  + FL H+   L    +  GRA
Sbjct: 262 PPFGRKSSLTMVGADGREVREDVEIERQDFVVT-TSNKQLNFLQHIMTIL----DINGRA 316

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF G A  GE+  R+ L + D +  I+ LPT +F+   +   +     +   
Sbjct: 317 AVVLPDNVLFEGGA--GETLRRKLLADFD-LHTILRLPTGIFYAQGVKANVLFFDRKPAS 373

Query: 417 ERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIY------VSRENGKFSRML 468
           E+    +L     ++    N+    K+  +      + +D Y        R   +  +  
Sbjct: 374 EQPWTTKL----WVYDLRTNQHFTLKQNPLRRHHLDEFVDFYLSGKPRDERVESERWKSF 429

Query: 469 DYRTF 473
            Y+  
Sbjct: 430 TYKEL 434


>gi|257463919|ref|ZP_05628305.1| Type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
 gi|317061446|ref|ZP_07925931.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
 gi|313687122|gb|EFS23957.1| type I restriction enzyme StySPI M protein [Fusobacterium sp. D12]
          Length = 475

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/470 (20%), Positives = 169/470 (35%), Gaps = 79/470 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   +   +W     L  D   + ++   +     L+            + E Y      
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYMLFLKMACELGTEEEIQIPEAY------ 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               ++ V   G S  N  + +L  L        L             I     + +   
Sbjct: 56  --RWKTLVGYEGISLKNNYQQALLDL-----GKQLGQL---------GII----YRNAQT 95

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R+E+   L K+      I+ +  +V    + ++YE L+ +  SE   GA  + TPR ++ 
Sbjct: 96  RIEEPANLKKLFSEIDKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRVLID 153

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234
               ++           P +  T+YDP  GT GF+ +A  ++      +           
Sbjct: 154 SIVRMI----------KPELGETIYDPAAGTLGFIIEADKYLRKISQDYYGTAENPISEE 203

Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                  V    EL  +TH + +   L+  +E +          QG TLS+      RF 
Sbjct: 204 VSQKYKKVFSACELVQDTHRLGMMNALLHGIEGNFL--------QGDTLSEFGKQFSRFD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K   ++   +              +   S+  + FL  +   L +     
Sbjct: 256 IILSNPPFGTKKGGERATRDD------------LVYATSNKQLNFLEVIYRSLNVTGKA- 302

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
            RAA+VL  + LF G  G    EIR+ LL    +  I+ LPT +F+   + T +   +  
Sbjct: 303 -RAAVVLPDNVLFEGGVG---KEIRQDLLNKCNVHTILRLPTGIFYSQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            ++    K   I   DL T++ + G K   ++ +   +    +  RE  +
Sbjct: 359 TSDTNNTK--EIWYYDLRTNMPSFG-KTSPLSKEHFEEFERSFEKREEKE 405


>gi|260773573|ref|ZP_05882489.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio metschnikovii CIP 69.14]
 gi|260612712|gb|EEX37915.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio metschnikovii CIP 69.14]
          Length = 510

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 105/581 (18%), Positives = 179/581 (30%), Gaps = 101/581 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--LEPTRSAVREKYLAFGG 64
              ++   IW     L GD             T  + +     L   + A          
Sbjct: 2   KQDNIIQKIWSLCNILRGD-----------GITYYQYVSELSYLLFLKIAQENGSEKLIP 50

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                       G       +  L+ LG++   N +   I +F      +F         
Sbjct: 51  KGYRWVDLESYKGDGLLGFYQEMLTHLGAS-VENEVVKAIYAFPTT---VFSH------- 99

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                +  L  +    S IE H   V      ++Y  LI +   +   GA  + TPR +V
Sbjct: 100 -----SENLKAVIDGISKIEWH--QVGKDGFGDVYSGLIDKSAQDTRSGAGQYFTPRSLV 152

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH- 243
           +    L+           P +   + DP  G+GGFL  A +++ +     K       + 
Sbjct: 153 NTIVRLI----------QPNLGELIQDPATGSGGFLVSADSYIRNKYLREKYKANPPKYQ 202

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G E+E  T  +C+    +  L+         NI  G  L+ D+         ++NPPFG 
Sbjct: 203 GVEIEKNTRRICLMNTFLHELD--------ANIIYGDALTDDVAELAEADVIIANPPFGN 254

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K    +             R     P + +  + FL H+   L+     GGRAA+VL  +
Sbjct: 255 KAGGQRPL-----------RNDIPFPNV-NKQLAFLQHIYLGLKP----GGRAAVVLPDN 298

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF    G   +E+RR L+    +  I+ LPT +F+   + T +   +       + K Q
Sbjct: 299 VLFEAGVG---TEVRRDLMNKCNLHTILRLPTGIFYAQGVNTNVLFFTKG---SVKDKYQ 352

Query: 424 LINAT------DLWTSIRNEGKKRRII-------------NDDQRRQILDIYVS------ 458
             + T      DL T++ + G KR                 D        ++        
Sbjct: 353 EESCTQNVWVYDLRTNMPSFG-KRTPFGNSDIGFTPEELGTDPHMGAFEKVFGDKPDGTS 411

Query: 459 -RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
            R  G+FS     +     +  V    R    L  +                     WL 
Sbjct: 412 KRTEGEFS--FGAQEIEVDKDAVEENQRGDDRLAHSRWRCFSRKWIANTKGDSLDISWLK 469

Query: 518 ILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
               +           +   +       + L    +   + 
Sbjct: 470 DKNSIDVTGLSEPDVLAQEAKEELEAALRELDGLLTALEMN 510


>gi|300361583|ref|ZP_07057760.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
 gi|300354202|gb|EFJ70073.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus gasseri JV-V03]
          Length = 483

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 94/549 (17%), Positives = 184/549 (33%), Gaps = 88/549 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFT---LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W     L  D     +   I   T    L+        ++    +      
Sbjct: 2   NNQEIVQKLWNECNVLRDDGVS--YQDYITELTYILFLKM-------SKE---QGQEDDI 49

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
                 ++ V   G    N     L  LG+          I +   NA    +       
Sbjct: 50  PEKYHWDNLVSKEGLELKNFYRQLLLDLGNPEIVK--SERINAIYANASTAID------- 100

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                +   L KI K+   ++          + ++YE L+ +  SEV  GA  + TPR +
Sbjct: 101 -----EPANLEKIIKDIDELDWFSAREE--GLGDLYEGLMEKNASEVKSGAGQYFTPRVL 153

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------K 235
           +++   +            P +     DP  GT GF+  A  ++ D    +         
Sbjct: 154 INMMVKM----------TKPEIGDRCNDPAAGTFGFMVAADQYLKDQTDDYSTLSPDQYD 203

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL P TH + +    + R++            QG +LS +    K F   
Sbjct: 204 FQVEDAFSGMELVPNTHRLAIMNEYLHRMDGRLD--------QGDSLSANGKWMKGFDVV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG K   ++   +                + S+  + FL  + N L+       R
Sbjct: 256 LTNPPFGTKKGGERATRDD------------LTYETSNKQLNFLQIIYNSLKSDGKA--R 301

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+V+  + LF   A     +IR+ LL    +  I+ LPT +F+   + T +   +  ++
Sbjct: 302 AAVVVPDNVLF---ADGVGEKIRQDLLNKCNLHTILRLPTGIFYAQGVQTNVLFFTRGES 358

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY---VSRENGKFSRMLDYRT 472
           ++   K       D+   +R+ G KR  +N+        ++      +  +         
Sbjct: 359 DKDNTK--ETWIYDMRHQMRSFG-KRNPLNNKDFEDFEKLFCVDDRAQRKETWDKEKNPN 415

Query: 473 FGYRRIKVLRPLRM-------SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             +R+  +   L+        S++ D+        +    +++        D +  + + 
Sbjct: 416 GRWRKFTIDEILKRPNTSLDISWMNDEEEHDDRSLNEILSEMNE-KSKAISDAIAELNKA 474

Query: 526 IYPYGWAES 534
           +     +E 
Sbjct: 475 LEGIDDSED 483


>gi|258592717|emb|CBE69026.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [NC10 bacterium
           'Dutch sediment']
          Length = 503

 Score =  190 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 160/452 (35%), Gaps = 65/452 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  +  LE  R    +KY                AG      +  SL    +     
Sbjct: 50  MFLKCFDD-LEQRREVTEKKYRLAIEPPYRW---RDWAGNPDKGLTGESLLKFINDELFP 105

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L S   + + +A+ +     F  T  R+    LL  +    + +     +     ++++
Sbjct: 106 YLRSLTGTVAGDARDVLAAV-FKETYNRMLSGYLLRDVVNLVNRLNF-NSSDDIHTLAHL 163

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE ++R         + +F TPR V+ L    +          +P +   + DP  GTGG
Sbjct: 164 YESMLREMRDAAG-DSGEFYTPRPVIRLIVQQV----------NPRLGERVLDPAAGTGG 212

Query: 219 FLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           FL ++  H+          +        G E +P  + + +  +L+  L+         N
Sbjct: 213 FLVESYEHLKAQVKSVEDRRRLQEDTLFGIEKKPMPYLLGMMNLLLHGLD-------RPN 265

Query: 276 IQQGSTLSKD----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + + + L         +G R+H  ++NPPFG            E + G    F     + 
Sbjct: 266 LLRDNALRNPLVQITDSGARYHVIMTNPPFG-----------GEEEKGVQDNFPDAT-RT 313

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S+ ++LFL  +   L+     GGR  +V+ +  LF        + +++ LLE+  +  IV
Sbjct: 314 SETALLFLQFIMRSLK----RGGRCGMVVPNGTLFGDGVC---ARVKKELLEHFNLHTIV 366

Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR----IIND 446
            LP  +F   T+I T L         +             +     EG+K       +  
Sbjct: 367 RLPNGVFAPYTSIPTNLLFFDRSGPTKEI---------WYYEQPLPEGRKNYTKTQPLQF 417

Query: 447 DQRRQILDIYVSRENGKFSRMLD-YRTFGYRR 477
           ++    +  + +RE    +  +       Y +
Sbjct: 418 EEFAPCVAWWKNREENDRAWKVSINNVLKYDK 449


>gi|302560831|ref|ZP_07313173.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000]
 gi|302478449|gb|EFL41542.1| adenylosuccinate lyase [Streptomyces griseoflavus Tu4000]
          Length = 503

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 88/490 (17%), Positives = 175/490 (35%), Gaps = 78/490 (15%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILP----FTLLRRLECALEPTRSAV 55
            S + LA+ I    + +       GD          LP       L+  +  +E    A+
Sbjct: 15  TSQSRLASLIKSARDTMRKDAGMNGDLDR-------LPQLSWLLFLKAFDGRVEQEGEAL 67

Query: 56  R-EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
             + Y          E +  V  +     S   L +  +     +L   +   +++ + +
Sbjct: 68  DPDGYRRAIEEPYRWEDWATVPDF-----SGDELKSFVNDKLIPHLAGLVGDDAEDPRNV 122

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F   + R++   LL  +    + I           M+ +YE +++        G+
Sbjct: 123 ISTI-FKDVVNRMQSGTLLRDLVDIVNQIHFV-SADDIHTMAFVYESILKEMRDVAG-GS 179

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR V                     +  ++ DP  GTGGFL  A   +       
Sbjct: 180 GEFYTPRPVNRFMVQQSFLE----------LGESILDPASGTGGFLVQAYEALKGQVKTD 229

Query: 235 KIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGK 290
                L     G E +P  + +    +L+  ++       + +I++GS L +  +     
Sbjct: 230 TQRRRLHKDIRGIEKKPLPYLLGSMNLLLHGID-------APHIRRGSALLEMRNSNAAD 282

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +    L+NPPFG +   ++  V K   +G          +  + + LFL  + ++L+   
Sbjct: 283 KVDVVLTNPPFGGE---EEATVVKAFPDGF---------RTQETAWLFLYSILDQLK--- 327

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
             GGR AIVL +  LF     S  ++I++ L+++  +  +V LP  +F   T I + +  
Sbjct: 328 -LGGRCAIVLPNGSLFAVGENSIGAKIKKKLMKDCNLHTVVRLPQGVFAPYTQIPSNILF 386

Query: 410 LSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV-----SRENG 462
                  +     +V L      +T       K + +  +     +D +       RE G
Sbjct: 387 FEKTGPTQEVWFYEVPLPEGRRGYT-------KTKPMRFEDFESCVDWWGGKQREGREVG 439

Query: 463 KFSRMLDYRT 472
           + + ++    
Sbjct: 440 EQAWVVPASD 449


>gi|124006763|ref|ZP_01691594.1| type I restriction enzyme [Microscilla marina ATCC 23134]
 gi|123987671|gb|EAY27371.1| type I restriction enzyme [Microscilla marina ATCC 23134]
          Length = 539

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 188/486 (38%), Gaps = 79/486 (16%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY---- 81
              +F   I+  T L + L          V++       ++  LE+        +     
Sbjct: 30  DGNEFK--IITQTFLYKFLNDKFI---YEVKKLDEGIANADKPLEALAATPAQDYELLLL 84

Query: 82  ----NTSEYSLSTLGST--------NTRNNLESYIASFSDNAKAIF-------EDFDFSS 122
               NT+  + + L           N  ++ ++ +   +     IF       E      
Sbjct: 85  QLPANTARLAPAHLIPALYARQNEANFADSFDATLQDIAKANNEIFSVKTGQDERIVLFD 144

Query: 123 TIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFM 178
            ++R    ++      I                    + I+E+LI+ + +       ++ 
Sbjct: 145 NLSRYVTDKRDDFCRAIVNKLVDFSFEHIFEEKFDFYATIFEYLIKDYNTNSGGKYAEYF 204

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +    ++  + +          T YDP+ G+G  L +  + + +         
Sbjct: 205 TPHAVAKIMARCMVHGEVSNV--------TCYDPSAGSGTLLMNLAHQIGEN-------- 248

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
               + Q++  ++  +    +++     +       NI +G+T+S+         ++F Y
Sbjct: 249 RCTIYSQDISQKSSGLLRLNLIL-----NDLVHSLPNIVKGNTISEPYHKEGNALRQFDY 303

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLE 347
            +SNPPF   +   +DA++ +       RF  G+PK+ +         +LFL H+ + L+
Sbjct: 304 IVSNPPFKLDFSDMRDALDTKANRE---RFFAGVPKVPNKKKESMAIYLLFLQHIMHSLK 360

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+AAIV+ +   F       + +IR+ L++  ++  ++++P+++F  T     +
Sbjct: 361 P----NGKAAIVVPTG--FITAQSGIDKKIRQRLVDERMLAGVISMPSNIFANTGTNVSI 414

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
             L        + +V LI+A+ L   ++    +R +++ ++  QI++ + +++    FS 
Sbjct: 415 VFLDR----ANKDEVVLIDASGLGEKVKEGKSQRTVLSTEEEDQIIETFNAKKELDDFSV 470

Query: 467 MLDYRT 472
           ++ Y  
Sbjct: 471 IVSYDD 476


>gi|261855230|ref|YP_003262513.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Halothiobacillus neapolitanus c2]
 gi|261835699|gb|ACX95466.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Halothiobacillus neapolitanus c2]
          Length = 484

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/470 (17%), Positives = 162/470 (34%), Gaps = 77/470 (16%)

Query: 38  FTLLRRLECALEPTR--SAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSL-STLG 92
              L+ L+  LE  +   A  E   Y          +++      +       ++     
Sbjct: 32  LLFLKYLDS-LERDKAIEAQLEGKTYTPILDEAYRWDAWAAPKDATGVIDPNAAMTGDDL 90

Query: 93  STNTRNNLESYIASFSD----------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
                  L  Y+  F                IF +        ++     L +I  +   
Sbjct: 91  RDFVDRKLFPYLHGFKQRAAGPNTLEYKIGEIFGEIK-----NKIHSGYNLREIIDHIDE 145

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +      +    +S++YE  I+  G        ++ TPR ++     ++          +
Sbjct: 146 LRFG-SQIEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMVRVV----------A 193

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAG 258
           P +   +YD   G+ GFL +A +++        +  K       +G+E +   + + +  
Sbjct: 194 PQIGERIYDGAVGSAGFLCEAFDYLKSQPNRTTADIKTLQERTFYGKEKKSLAYVIAIMN 253

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +E       + NI   +TL++   D+    RF   L+NPPFG K  K+       
Sbjct: 254 MILHGIE-------APNIVHTNTLAENLADVQDKDRFDIILANPPFGGKERKEVQQNFPI 306

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         +  + + LFL H    L+     GGRAA+V+ ++ L N    S   
Sbjct: 307 --------------RTGETAFLFLQHFIKLLK----AGGRAAVVIKNTFLSNTDNAS--V 346

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LLE+  +  ++ +P   F    + T +          +    QL          R
Sbjct: 347 SLRKLLLESCNLHTVLDMPGGTFLGAGVKTVVLFFEKGAPTRQVWYYQL-------DPGR 399

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD--YRTFGYRRIKVLRP 483
           N G K   +ND    + +++  +  +   S  +D          + V  P
Sbjct: 400 NMG-KTNPLNDADLAEFIELQKTFADSPKSWRVDAATLDTTTYDLSVKNP 448


>gi|293369116|ref|ZP_06615710.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
 gi|292635699|gb|EFF54197.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
          Length = 384

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 148/435 (34%), Gaps = 78/435 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTD---FGKVI--LP-FTLLRRLECALEPTRSA 54
           M +   +   L   +W  A  L           F   I  L     L+      +     
Sbjct: 1   MAKSNSNEQGLTKKVWTLATTL-----AGQGIGFTDYITQLTYLLFLKM-----DDENVK 50

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           + ++  +        E+ +++ G       E +L  L     ++NL   I          
Sbjct: 51  LLDE-ESAIPEGYRWENLIELDGLDLIGQYENTLRILSE---QDNLIGTI---------- 96

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                ++    +++K   L K+    +  +     +   V   IYE ++ + G +   GA
Sbjct: 97  -----YTKAQNKIDKPVYLKKVITMINEEQWL--IMDGDVKGAIYESILEKNGQDKKSGA 149

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR ++     +            P +  T+ DP CGTGGFL  A +++       
Sbjct: 150 GQYFTPRSLISAMVDV----------TRPQIGETVCDPACGTGGFLLAAYDYMKKQSQDK 199

Query: 235 KIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      HG +  P    +    + +  + +D        I    +L K+      
Sbjct: 200 GKRDFLRNKALHGSDNTPLVVTLASMNLYLHGVGTDRSP-----IICQDSLEKE--PDIL 252

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  L+NPPFG +     D    +                 +  + FL H+   L+    
Sbjct: 253 VNVILANPPFGTRPSGSVDINRSDFYVE-----------TKNNQLNFLQHIMLSLKT--- 298

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGRAA+VL  + LF G AG     IR+ LL    +  I+ LPT +F+   +   +   +
Sbjct: 299 -GGRAAVVLPDNVLFEGGAG---EVIRKKLLSEFNLHTILRLPTGIFYAQGVKANVLFFT 354

Query: 412 NRKTEERRGKVQLIN 426
                 R   +   +
Sbjct: 355 KG---SRTKDIWFYD 366


>gi|288947722|ref|YP_003445105.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Allochromatium vinosum DSM 180]
 gi|288898238|gb|ADC64073.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Allochromatium vinosum DSM 180]
          Length = 487

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 160/465 (34%), Gaps = 72/465 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+E T +   +   +W     L        + + +   T L  L+   E    +      
Sbjct: 1   MSE-TVTR-DIVAKLWNLCHILRD--DGVTYNEYVTELTFLLFLKMMRETGHESRL---- 52

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                    E      G          L  LGST   ++            + I     F
Sbjct: 53  ---PLGYRWEELASRTGLDQLEYYRDLLLNLGSTKKTHD------------QTILSI--F 95

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    +L K   L  +      ++          + N+YE L+ +  +E   GA  + TP
Sbjct: 96  ADANTKLRKPANLKALTTAIDKLDWFEAREE--GLGNLYEGLLEKNAAEKKSGAGQYFTP 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R ++     L+           P     + DP  GTGGFL  A +++        +    
Sbjct: 154 RPLIDCLVRLM----------KPKPGEVIQDPAAGTGGFLVAADHYMKQNDKFFDLDEKE 203

Query: 241 VPH-------GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +         G EL P+ H +C+  +++  +E               TLS D     +  
Sbjct: 204 ILFQQYSAYKGAELVPDAHRLCLMNLILHGIEGTVTCS--------DTLSPDGLALGKAD 255

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPFG K +        +                S+  + F+ H+   L+     G
Sbjct: 256 LILSNPPFGTK-KGGGKPNRADFSITSD---------TSNKQLAFVEHIVRALKK----G 301

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GRAA+V+  + LF    G     +R W++E   +  I+ LPT +F+   + T +   +  
Sbjct: 302 GRAAVVVPDNVLFEDNTG---RRLRTWMMELCDLHTILRLPTGIFYAQGVKTNVLFFTRG 358

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +T++   +   +   DL  ++   G K R +      +    + +
Sbjct: 359 QTDKANTES--VWVYDLRANMPAFG-KTRPLTVKDFEEFEAAFGN 400


>gi|262066435|ref|ZP_06026047.1| type I restriction enzyme StySPI M protein [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379862|gb|EFE87380.1| type I restriction enzyme StySPI M protein [Fusobacterium
           periodonticum ATCC 33693]
          Length = 474

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 92/500 (18%), Positives = 171/500 (34%), Gaps = 94/500 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   + ++      IL    L+ L             +    
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKML------------AEQDNE 46

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS--DNAKAIFEDFDF 120
               +  E                +L  L     +   +  +   S  +N  AI     +
Sbjct: 47  AEVGVPEEYRWN------------TLVKLDGLELKTTYQKALIDLSQKENNLAII----Y 90

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            +    +E+   L KI      ++ +  ++      ++YE L+ +  SE   GA  + TP
Sbjct: 91  RNAKTNIEEPANLKKIFSEIDKMDWY--SMDKEDFGDLYEGLLEKNASEKKSGAGQYFTP 148

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK----- 235
           R ++     +            P +   + DP  GT GF+  A  ++ +    +      
Sbjct: 149 RVLIDTIVKV----------TKPQLKERICDPASGTLGFIISANRYIKEKNDDYYGISEE 198

Query: 236 ---IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                        EL P+TH + +   L+  +E +          QG TLS      K F
Sbjct: 199 DYAFQKKEAFSACELVPDTHRLGIMNALLHGVEGNFL--------QGDTLSATGTQLKNF 250

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              LSNPPFG K   ++   +              +   S+  + FL  +   L L    
Sbjct: 251 DLILSNPPFGTKKGGERATRDD------------LVFSSSNKQLNFLEIIYRSLNLTGRA 298

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
             RA +VL  + LF G  G    +IR+ LL    +  I+ LPT +F+   + T +     
Sbjct: 299 --RAGVVLPDNVLFEGGIG---KDIRQDLLNKCNVHTILRLPTGIFYAQGVKTNVLFFDR 353

Query: 413 RKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            K++    K +   +   L T++ N G K   + +    + +  + + E  +        
Sbjct: 354 AKSDIGNTKDIWFYD---LRTNMPNFG-KTTPLTEKYFEEFISTFDNDEEKEKLERW--- 406

Query: 472 TFGYRRIKVLRPLRMSFILD 491
                +I +   ++  + LD
Sbjct: 407 ----TKISIDEVIKKDYSLD 422


>gi|312115848|ref|YP_004013444.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311220977|gb|ADP72345.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 482

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 175/499 (35%), Gaps = 63/499 (12%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L       R       + Y       I  + +        ++ +           
Sbjct: 33  LFLKYLHDLESERRDRAELEGKDYKPIIDGQIRWDQWAAPKKNGQFDHNTALTGDDLVDF 92

Query: 96  TRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
              +L  Y+A F + A     I       F+   ++     +L  + +    +       
Sbjct: 93  VDRSLFPYLARFHERATGPDTIEYKIGEVFTELRSKFRSGYILRDVLEIVDSLHFKTQA- 151

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               +S +YE  IRR G        ++ TPR ++     ++          +P +  T+Y
Sbjct: 152 DKHELSALYETRIRRMG-NAGRNGGEYYTPRPLIRAMIRVV----------APKIGETIY 200

Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           D   G+ GFL +A +++       S ++       +GQE +   + + +  M++  +E  
Sbjct: 201 DGAVGSAGFLCEAYDYLRRPNISASDYETLQRRTFYGQEKKSLAYIIGIMNMILHGIE-- 258

Query: 268 PRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                + NI + ++L++   D     R    L+NPPFG     ++  V++          
Sbjct: 259 -----APNIVRTNSLNENVLDYQEKDRHDIVLANPPFGG---GERREVQQNFPI------ 304

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K  + + LFL H   KL      GGRAA+V+ ++ L N    S    +RR LLE+
Sbjct: 305 -----KSGETAYLFLQHFIRKLR----AGGRAAVVIKNTFLSNTDNAS--VALRRELLES 353

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +  I+  P   F    + T +      +   R    QL+    +         K   +
Sbjct: 354 CNLHTILDCPQGTFQGAGVKTVVLFFQKGEATRRIWYYQLVPGRSMG--------KTNPL 405

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           NDD   + +++      G  S ++D  T           ++     +   +   E  I  
Sbjct: 406 NDDDMAEFVELQRGFVTGPKSWIVDIAT--VDAKTFDLSVKNPNAPEAEAMRSPEEIIDA 463

Query: 505 RKLSPLHQSFWLDILKPMM 523
                   +  L+ ++ ++
Sbjct: 464 ILARDAETAEILERIRGLL 482


>gi|330814745|ref|YP_004362920.1| N-6 DNA methylase [Burkholderia gladioli BSR3]
 gi|327374737|gb|AEA66088.1| N-6 DNA methylase [Burkholderia gladioli BSR3]
          Length = 474

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/512 (18%), Positives = 171/512 (33%), Gaps = 83/512 (16%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
           G        L+ +                   G+              F +         
Sbjct: 31  GDYTFAMLFLKCIS-----------------EGALQSSTVLTIPDASRFESLYTSRFQAG 73

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTV 150
              +    L + + + +     +FE   F S+    E A  L  ++ + F+   L     
Sbjct: 74  QQGHVDEAL-ALLEAANPTLGGVFEQIRFGSSGLGNEYADRLIRRLIEEFADDALCFRGT 132

Query: 151 PDRV---MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
              V   +    + LI     E    ++D  TP ++  + + ++          SP    
Sbjct: 133 AADVAPCVDFACDTLI-DLAFEARRRSDDSFTPTEIAGVVSRIV----------SPVQGE 181

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+ DP CG G FL      V            L   GQE++  T A+    + +R     
Sbjct: 182 TVCDPCCGVGTFLVACQRRV---------DGDLGLFGQEMDGRTWAIAKMNLFMRG---- 228

Query: 268 PRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               L + I+ G TL            ++F   +S PP G +    +     E      G
Sbjct: 229 ---QLEQQIEWGDTLRYPRLLDSEGKLRKFDVVVSMPPLGARAWGQE-----EAIYDHYG 280

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+  G+P        F+ H+   L+      GR A+V+    LF G A   E +IR  LL
Sbjct: 281 RYRRGIPPRFSPEFAFISHMVETLDPLH---GRLAVVVPFGVLFRGAA---EKQIRERLL 334

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             +L++A++ALP  L   T+I   + +L   +       V  I+A   + +    GK R 
Sbjct: 335 RENLVDAVIALPPRLLGHTSIPLAIMVLRTGRAVS---DVFFIDAGRAYEA----GKTRN 387

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           ++ +    +I   Y  R++           F  R++ +         L+      +    
Sbjct: 388 VLTEQHIERIEHTYRERQDVPR--------FA-RKVSIEEIFSHETSLNVARYVDVTEVE 438

Query: 503 TWRKLSPL--HQSFWLDILKPMMQQIYPYGWA 532
               L+ L   + F ++ L  +  ++      
Sbjct: 439 APVNLAALNEERQFLIEELTELEARMSVLLSR 470


>gi|253583389|ref|ZP_04860587.1| type I restriction enzyme StySPI M protein [Fusobacterium varium
           ATCC 27725]
 gi|251833961|gb|EES62524.1| type I restriction enzyme StySPI M protein [Fusobacterium varium
           ATCC 27725]
          Length = 479

 Score =  189 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 175/502 (34%), Gaps = 93/502 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           ++  +   +W     L  D   + ++      IL    L+         +  +  KY   
Sbjct: 2   TSNEVVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKMSSELENEEKIGIPLKY--- 55

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                  +   K+ G    N  +  L  LG           I         I     + +
Sbjct: 56  -----RWKELAKLEGIELKNNYQKCLLDLGQ----------IDGKL----GII----YRN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
              ++E+   L KI    + I+ +  +V    + ++YE L+ +  SE   GA  + TPR 
Sbjct: 93  AQTKIEEPANLKKIFNEINKIDWY--SVDKEDLGDLYEGLLEKNASEKKSGAGQYFTPRV 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------- 233
           ++     ++           P +   + DP  GT GF+ +A  ++               
Sbjct: 151 LIDSIVRII----------KPELGERICDPAAGTFGFIIEADKYLRRKYDDYFGTKERPV 200

Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                +          EL P+TH + +   L+  +          N  QG +LS+     
Sbjct: 201 TDEEREFQATEAFSACELVPDTHRLGIMNALLHGING--------NFIQGDSLSETGKQL 252

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           + F   LSNPPFG K   ++   +              + + S+  + FL  +   L+  
Sbjct: 253 RNFDLILSNPPFGTKKGGERVTRDD------------LVHETSNKQLNFLQIIYRSLKTT 300

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
                RAA+++  + LF G  G    +IR  LL    +  ++ LPT +F+   + T +  
Sbjct: 301 GKA--RAAVIIPDNVLFEGGVG---KDIRMDLLNKCNLHTVLRLPTGIFYAQGVKTNVLF 355

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
               +T+    K       DL T++ N G K   +      +  + + S E  +     +
Sbjct: 356 FERGRTDVNNTK--ETWYYDLRTNMPNFG-KNTPLTSSHFEEFEETFDSVEEKEKLERWN 412

Query: 470 YRTFGYRRIKVLRPLRMSFILD 491
                   I +   ++  + LD
Sbjct: 413 -------LITLEEVIKKDYSLD 427


>gi|291526086|emb|CBK91673.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale DSM 17629]
          Length = 486

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 179/508 (35%), Gaps = 78/508 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+   E T+              +D ES             +Y  S   +  + 
Sbjct: 35  LLFIKQLDEV-ETTKE------NEANFLGVDYESMFPGECQ------KYRWSKFKNLGSA 81

Query: 98  NNLESY-IASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
             +    +       K + +D D          I ++  A +L KI      +EL     
Sbjct: 82  EEMYELVLNGVFPFIKNLHQDGDSAYARYMGDAIFKIPTAAMLSKIVDGIDKLELG---- 137

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +    ++YE+L+ +  +        F TPR ++ +   L+           P    T+ 
Sbjct: 138 DEDSKGDLYEYLLSKVATAG--TNGQFRTPRHIIKMMVELV----------KPSPDDTII 185

Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
           DP  G+ GFL +A +++ +            +     + +G +++     +    ML+  
Sbjct: 186 DPAMGSAGFLIEAQSYLRENHPELFLHKESLEHFNNTMFYGNDMDRTMLRIGAMNMLLHG 245

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E       + NI    +LS+     +++   L+NPPF    + +  + +          
Sbjct: 246 VE-------NPNISYRDSLSEQNTDVEKYSLVLANPPFKGSLDYEAVSADL--------- 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L+     GGRAA+++    LF   +     +IR+ ++E
Sbjct: 290 --LKVTKTKKTELLFLALFLRILKK----GGRAAVIVPDGVLF--GSSKAHKQIRKEIIE 341

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           N+ ++A++++P+ +F     ++T + I +   + +   KV   +   +     +   KR+
Sbjct: 342 NNKLDAVISMPSGVFKPYAGVSTAILIFTKTGSSD-TDKVWFYD---MKADGLSLDDKRQ 397

Query: 443 IINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            I D+    I++ +        R+    S  +           +        + +     
Sbjct: 398 EIADNDIPDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNNYDLSINKYKEIVYEAVQYE 457

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +  I             L  LK ++ 
Sbjct: 458 PTDVIIGKIDALESEIQGELAELKKLLD 485


>gi|237739318|ref|ZP_04569799.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           2_1_31]
 gi|229422926|gb|EEO37973.1| type I restriction enzyme StySPI M protein [Fusobacterium sp.
           2_1_31]
          Length = 474

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 92/498 (18%), Positives = 170/498 (34%), Gaps = 90/498 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           +   +   +W     L  D   + ++      IL    L+ L        +    +    
Sbjct: 2   TNNEIVQKLWNLCNVLRDDGITYHEYVTELTYIL---FLKML--------AEQDNEAEVG 50

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                   + +K+ G     T + +L  L        +                   + +
Sbjct: 51  IPEEYRWNTLIKLDGLELKTTYQKALIDLAQKENNLAII------------------YRN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +E+   L KI      ++ +  +V      ++YE L+ +  SE   GA  + TPR 
Sbjct: 93  AKTNIEEPANLKKIFSEIDKMDWY--SVDKEDFGDLYEGLLEKNASEKKSGAGQYFTPRV 150

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK------- 235
           ++     +            P +   + DP  GT GF+  A  ++ +    +        
Sbjct: 151 LIDTIVKV----------TKPQLKERICDPASGTLGFIISANRYIKEKNDDYYGISEEDY 200

Query: 236 -IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                      EL P+TH + +   L+  +E +          QG TLS      K F  
Sbjct: 201 AFQKKEAFSACELVPDTHRLGIMNALLHGVEGNFL--------QGDTLSATGTQLKNFDL 252

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            LSNPPFG K   ++   +              +   S+  + FL  +   L L      
Sbjct: 253 ILSNPPFGTKKGGERATRDD------------LVFSSSNKQLNFLEIIYRSLNLTGRA-- 298

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RA +VL  + LF G  G    +IR+ LL    +  I+ LPT +F+   + T +      K
Sbjct: 299 RAGVVLPDNVLFEGGIG---KDIRQDLLNKCNVHTILRLPTGIFYAQGVKTNVLFFDRAK 355

Query: 415 TEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           T+    K +   +   L T++ N G K   + +    + +  + + E  +          
Sbjct: 356 TDIGNTKDIWFYD---LRTNMPNFG-KTTPLTEKYFEEFISTFDNDEEKEKLERW----- 406

Query: 474 GYRRIKVLRPLRMSFILD 491
              +I +   ++  + LD
Sbjct: 407 --TKISIDEVIKKDYSLD 422


>gi|75674467|ref|YP_316888.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
 gi|74419337|gb|ABA03536.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
          Length = 519

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/505 (19%), Positives = 172/505 (34%), Gaps = 90/505 (17%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRSA- 54
            ++  L + +    + +       GD          LP       L+ L+  LE  R   
Sbjct: 16  TTSQMLGSLLKSARDIMRKDKGLNGDLDR-------LPLLTWIMFLKFLDD-LEQQREEE 67

Query: 55  ----------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
                       E    +     D +        SF N  E   +          L +Y+
Sbjct: 68  TALSGKKFKAAIEAPYRWRDWAADPQGITGDELLSFINAEEAVRADGKK---GPGLFAYL 124

Query: 105 ASFS----DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            + S    DN + +     F     R++   LL  I     GI     +     +  +YE
Sbjct: 125 RALSSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIINKVGGIHFT-SSDELHTLGALYE 182

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            ++R         + +F TPR VV     +            P +  T+ DP  GTGGFL
Sbjct: 183 SMLREMRDAAG-DSGEFYTPRAVVRFMVEV----------TDPRLGETVLDPASGTGGFL 231

Query: 221 TDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            +  NH+          K        G E +   + +C   +L+  L+       +  I 
Sbjct: 232 VETYNHLEKQVKTVADRKRLQDETITGCEPKSLPYLLCQMNLLLHGLD-------APQID 284

Query: 278 QGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            G+ L     ++   +R    L+NPPFG + EK       E +              ++ 
Sbjct: 285 PGNALRFKLSEIGEKERVDVILTNPPFGGEEEKGIQGNFPEDRQ------------TAET 332

Query: 335 SMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           ++LFL  +  KL+  P   G   RAA+V+ +  LF        + I+  LL++  +  IV
Sbjct: 333 ALLFLQLIMRKLKRQPTSVGRPARAAVVVPNGTLFGDGVC---ARIKEELLKDFNLHTIV 389

Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQ 448
            LP  +F   T+I T +         +     +  L +    +T       K + +  ++
Sbjct: 390 RLPNGVFAPYTSIPTNILFFDRSCQTKEVWYYEQPLPDGRKNYT-------KTQPMQFEE 442

Query: 449 RRQILDIYVSRENGKFSRMLDYRTF 473
            +  +  +  RE    +  +  +  
Sbjct: 443 FKGCMAWWTKREENDQAWRVSAKEL 467


>gi|332289273|ref|YP_004420125.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
 gi|330432169|gb|AEC17228.1| N-6 DNA Methylase [Gallibacterium anatis UMN179]
          Length = 539

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 169/484 (34%), Gaps = 79/484 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFGG 64
           +   +   +W   + L       ++   +    +L  ++   E  +  V E  ++     
Sbjct: 2   TNNEIVQKLWNLCDVLRD--DGINYNDYLTELVMLLFIKMTYEKEQIFVEEGIEFTTLLP 59

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                + F   +G    N  +  L  L +    +         S +   +     +++  
Sbjct: 60  EGCRWDDFNDKSGSELLNHYKRILLLLSTGKDGDK--------SVHHNPLLLAI-YANAS 110

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             L++   L +I K F  ++    ++    + ++YE L+ +  +E   GA  + TPR ++
Sbjct: 111 TSLKEPKHLEQIIKAFDAMDWF--SMQKDGLGDLYEGLLEKNATETKSGAGQYFTPRALI 168

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHKIP 237
           ++    +           P +   + DP  GT GFL  A  +V        D G   +  
Sbjct: 169 NVMVRCI----------QPKVGEIVQDPAAGTAGFLIAADQYVRHQSDDYLDLGDEERKF 218

Query: 238 PILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              V   G EL   T  + +   L+  +E          + QG+TL          +  L
Sbjct: 219 QNEVAFQGVELVENTRRLALMNCLLHGIEGGEEGA----VIQGNTLGSAGKDLPNANVIL 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     +      +              + S+  + FL H+   L      GGRA
Sbjct: 275 ANPPFGSSKGGEAAITRDDL-----------TFETSNKQLAFLQHIYRNL----QEGGRA 319

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN---- 412
           A+VL  + LF    G   +EIR+ L+    +  I+ LPT +F+   + T +   +     
Sbjct: 320 AVVLPDNVLFEANKG---TEIRQDLMSKCNVHTILRLPTGIFYAQGVKTNVLFFNKATQS 376

Query: 413 --------------RKTEER-----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
                          K  E          Q I   DL T++ N G KR    +   +   
Sbjct: 377 QTISVKAGVKEKESEKDAEEVLQKSNDPTQKIWVYDLRTNMPNFG-KRTPFTEHYLKAFE 435

Query: 454 DIYV 457
            ++ 
Sbjct: 436 AVFN 439


>gi|283954322|ref|ZP_06371843.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794121|gb|EFC32869.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 227

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 26/223 (11%)

Query: 80  FYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
           F+N S+++L TL     N R N E+Y+  FS+N K I   F F + +  LE++ +L+ + 
Sbjct: 12  FFNYSQFNLQTLLNNPKNIRINFENYLDCFSENIKDIISKFKFKNQLDTLEESNILFGVI 71

Query: 138 KNFSGI--------------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           + F                  L    + +  M  ++E LIR+F  E +E A +  TPR++
Sbjct: 72  ERFCSPKVNFGIEDILDEKGNLIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREI 131

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
           + L T L+  P     K+       +YD  CG+GG LT++   + D     K    +  +
Sbjct: 132 IELMTHLVFLPVKEQIKKG---TWLIYDNACGSGGMLTESKEFITDPNGLIKSKANIHLY 188

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           GQE+ PET+A+C A MLI+  + D       +I+ GSTLS D 
Sbjct: 189 GQEINPETYAICKADMLIKGEDPD-------HIKFGSTLSNDQ 224


>gi|291527177|emb|CBK92763.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 486

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 179/508 (35%), Gaps = 78/508 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+   E T+              +D ES             +Y  S   +  + 
Sbjct: 35  LLFIKQLDEV-ETTKE------NEANFLGVDYESMFPGECQ------KYRWSKFKNLGSA 81

Query: 98  NNLESY-IASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
             +    +       K + +D D          I ++  A +L KI      +EL     
Sbjct: 82  EEMYELVLNGVFPFIKNLHQDGDSAYARYMGDAIFKIPTAAMLSKIVDGIDKLELG---- 137

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +    ++YE+L+ +  +        F TPR ++ +   L+           P    T+ 
Sbjct: 138 DEDSKGDLYEYLLSKVATAG--TNGQFRTPRHIIKMMVELV----------KPAPDDTII 185

Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
           DP  G+ GFL +A +++ +            +     + +G +++     +    ML+  
Sbjct: 186 DPAMGSAGFLIEAQSYLRENHPELFLHQESLQHFNNTMFYGNDMDRTMLRIGAMNMLLHG 245

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E       + NI    +LS+     +++   L+NPPF    + +  + +          
Sbjct: 246 VE-------NPNISYRDSLSEQNTDVEKYSLVLANPPFKGSLDYEAVSADL--------- 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L+     GGRAA+++    LF   +     +IR+ ++E
Sbjct: 290 --LKVTKTKKTELLFLALFLRILKK----GGRAAVIVPDGVLF--GSSKAHKQIRKEIIE 341

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           N+ ++A++++P+ +F     ++T + I +   + +   KV   +   +     +   KR+
Sbjct: 342 NNKLDAVISMPSGVFKPYAGVSTAILIFTKTGSSD-TDKVWFYD---MKADGLSLDDKRQ 397

Query: 443 IINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            I D+    I++ +        R+    S  +           +        + +     
Sbjct: 398 EIADNDIPDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNNYDLSINKYKEIVYEAVQYE 457

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +  I             L  LK ++ 
Sbjct: 458 PTDVIIGKIDALESEIQGELAELKKLLD 485


>gi|167461218|ref|ZP_02326307.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381544|ref|ZP_08055522.1| type I restriction-modification system methyltransferase
           subunit-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154502|gb|EFX46800.1| type I restriction-modification system methyltransferase
           subunit-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 485

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/496 (17%), Positives = 175/496 (35%), Gaps = 82/496 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     TR      +L      +       +    F N     +  L      
Sbjct: 35  LLFIKGLDDI--ETRKENEAAFLGLTYEGMFPNDKQDLRWSRFKNMEANQMYNLVLNGIF 92

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             +++             ED  F     ++    +L KI     GI++           +
Sbjct: 93  PFIKNLHQDGDSAYSKYMEDAIF-----KIPTPQMLTKIVDGIDGIDME----KRDAKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 144 LYEYLLSKVATAG--MNGQFRTPRHIIEMMVRLM----------KPSPSDVIADPAMGSA 191

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  +V +  +         K     + +G +++     +    ML+  ++     
Sbjct: 192 GFLVAAQEYVKEHHADLFLHAGLKKHFNQDMFYGFDMDRTMLRIGAMNMLLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               NI+   +LS+     +++   L+NPPF  K   D DAV K+            + K
Sbjct: 247 --QPNIEYKDSLSEQNGDQEKYTMILANPPF--KGSLDYDAVSKDLLK---------ITK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL  +   L+     GGR+A ++  S LF   +     EIR+ L++N  +EA+
Sbjct: 294 TKKTELLFLALILRSLK----LGGRSATIVPDSVLF--GSSKAHKEIRKELVDNHKLEAV 347

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +         +V   +         +   KR+ I  +  
Sbjct: 348 ISMPSGVFKPYAGVSTAVLIFTKT-GAGGTDQVWFYDMKADGY---SLDDKRQQIEQNDI 403

Query: 450 RQILDIYVS------RENGKFSRMLD---------------YRTFGYRRIKVLRPLR--M 486
             I++ + +      R+  + S ++D               Y+   Y+ +    P    +
Sbjct: 404 PDIVERFENLQGEKTRKRTEQSFLVDVQEIRDNGYDLSINKYKEIEYKEVTYDHPREILL 463

Query: 487 SFILDKTGLARLEADI 502
                +  +     ++
Sbjct: 464 RIQQLEEEIQAGLEEL 479


>gi|91792593|ref|YP_562244.1| N-6 DNA methylase [Shewanella denitrificans OS217]
 gi|91714595|gb|ABE54521.1| N-6 DNA methylase [Shewanella denitrificans OS217]
          Length = 501

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 96/538 (17%), Positives = 188/538 (34%), Gaps = 71/538 (13%)

Query: 10  SLANFIWKNAEDLWGD--FKHTDFGKVILP----FTLLRRLECALEPTRSAVREKYLAFG 63
           S+++ I    + +  D            L        L+  +      +    E  L   
Sbjct: 2   SISSAIKSIQDIMRKDAGVDGDAQR---LGQMSWLLFLKVFDA-----QEQELELELDNY 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              I  E   +         +   L    +      L++  A    N +       FS  
Sbjct: 54  REPIPEEFLWRHWAADNQGITGDELLEFVNDELFPKLKNLTAPIDKNPRGYVVKEAFSDA 113

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++   LL ++    + I+   D+    +  ++YE +++   S  +  A +F TPR +
Sbjct: 114 FNYMKNGTLLRQVINKLNEIDFT-DSNERHLFGDLYEQILKDLQSAGN--AGEFYTPRAI 170

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240
                A+            P +  ++ DP CGTGGFL  A +HV       +        
Sbjct: 171 TKFIVAV----------TDPKLGESIMDPACGTGGFLACAFDHVKANYVKTADDHQTLQQ 220

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNP 299
              G E +   H +C   M++  +E          I+ G+TL+K      ++    ++NP
Sbjct: 221 QIFGVEKKQLPHLLCTTNMMLHGIEV------PVQIRHGNTLNKPLSSWDEQVDVIITNP 274

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG------- 352
           PFG     ++D +EK   +    R      + +D   LFL  +   L  P  G       
Sbjct: 275 PFGG---TEEDGIEKNFPSEFQTR------ETAD---LFLQLIIEVLAEPSAGNEPSALK 322

Query: 353 -GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWI 409
            GGRAA+VL    LF        ++I++ L++   +  IV LP  +F  + T I T +  
Sbjct: 323 SGGRAAVVLPDGTLFGEGVK---TKIKKMLMDECNLHTIVRLPNGVFNPY-TGIKTNILF 378

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            +     +    +        + +      K + +  ++    L  +    +G  SR+ +
Sbjct: 379 FTKGTPTK---DIWFYE--HPYPAGVKNYNKTKPMKFEEFETELSWWGDEADGFASRVEN 433

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            +     ++ +   +  ++ LD       E      +      +     ++ +  Q+ 
Sbjct: 434 EQA---WKVSIEDIINRNYNLDIKNPHVGEVISHDPQTLLSDYAKQQADIQALRDQLK 488


>gi|167854766|ref|ZP_02477544.1| glucose-inhibited division protein B [Haemophilus parasuis 29755]
 gi|167854064|gb|EDS25300.1| glucose-inhibited division protein B [Haemophilus parasuis 29755]
          Length = 515

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/463 (18%), Positives = 164/463 (35%), Gaps = 61/463 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LPFT-LLRRLECALEPTRSAVREKYLAFG 63
           +   +   +W   + L       ++   +  L     ++ +            E+   F 
Sbjct: 2   TNNEIVQKLWNLCDVLRD--DGINYNDYLTELVMLLFIKMVH----EKEQLFIEEKTEFK 55

Query: 64  GSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
               +   +  ++G S  N    Y    L  +  + N    I   +    AI+ +     
Sbjct: 56  PLLPEGCRWEDLSGKSGINLLDNYRRMLLVLSTGKEN--DEIVHNNPLLLAIYANAK--- 110

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               L +   L ++ +NF  ++          + ++YE L+ +  +E   GA  + TPR 
Sbjct: 111 --TSLTQPKHLEQLVRNFDEMDWFSAQKD--GLGDLYEGLLEKNATETKSGAGQYFTPRA 166

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-------DCGSHHK 235
           +++     +          +P +   + DP  GT GFL  A  ++        D     +
Sbjct: 167 LINSMVRCI----------NPVVGEVIQDPAAGTAGFLIAADQYMRNKTDDYFDLSEQDR 216

Query: 236 IPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              I     G EL   T  + +   L+  +E          + QG++L       K    
Sbjct: 217 HFQIHEAFKGVELVTNTRRLALMNCLLHGIEGGSEGA----VIQGNSLGDVGKNLKPADI 272

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPFG     D      +              + ++  + FL H+   L+     GG
Sbjct: 273 ILANPPFGTSKGGDAVITRDDL-----------TFETTNKQLAFLQHIYRNLKE----GG 317

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RAA+VL  + LF    G   ++IR+ L++   +  I+ LPT +F+   + T +       
Sbjct: 318 RAAVVLPDNVLFEAGKG---TDIRKDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFDKV- 373

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           + +     Q     DL T++ + G KR    +        ++ 
Sbjct: 374 SNDAENSTQKTWVYDLRTNMPSFG-KRTPFTEKYLEAFEKVFN 415


>gi|168262424|ref|ZP_02684397.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205348666|gb|EDZ35297.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 489

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/495 (18%), Positives = 178/495 (35%), Gaps = 58/495 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         +      +         +   L    + +  
Sbjct: 33  LLFLKIFDA-----QEQALEIEQEKYRLPMPERYLWRNWAADNEGITGDKLLAFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+   A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PTLKDLPAQIDINPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-RASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   +  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILRDLQAAGN--AGEFYTPRAVTRFMVERV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +  +H            HG E +   H +C   ML+  +E         
Sbjct: 195 GFLACAFDHVKNHYAHTVTDHQLLQRQIHGVEKKQLPHLLCTTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK   +    R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQMDVIITNPPFGG---TEEDGIEKNFPSDMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +    +        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---DIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     ++E            
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQVETVSHDPDELLAQ 460

Query: 512 QSFWLDILKPMMQQI 526
            +   + ++ +  Q+
Sbjct: 461 YAKQQEAIQTLRHQL 475


>gi|238924766|ref|YP_002938282.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Eubacterium rectale ATCC
           33656]
 gi|238876441|gb|ACR76148.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Eubacterium rectale ATCC
           33656]
          Length = 486

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 178/508 (35%), Gaps = 78/508 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+   E T+              +D ES             +Y  S   +  + 
Sbjct: 35  LLFIKQLDEV-ETTKE------NEANFLGVDYESMFPGECQ------KYRWSKFKNLGSA 81

Query: 98  NNLESY-IASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
             +    +       K + +D D          I ++  A +L KI      +EL     
Sbjct: 82  EEMYELVLNGVFPFIKNLHQDGDSAYARYMGDAIFKIPTAAMLSKIVDGIDKLELG---- 137

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +    ++YE+L+ +  +        F TPR ++ +   L+           P    T+ 
Sbjct: 138 DEDSKGDLYEYLLSKVATAG--TNGQFRTPRHIIKMMVELV----------KPAPDDTII 185

Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
           DP  G+ GFL +A +++ +            +     + +G +++     +    ML+  
Sbjct: 186 DPAMGSAGFLIEAQSYLRENHPELFLHQESLEHFNNTMFYGNDMDRTMLRIGAMNMLLHG 245

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E       + NI    +LS+     +++   L+NPPF    + +  + +          
Sbjct: 246 VE-------NPNISYRDSLSEQNTDVEKYSLVLANPPFKGSLDYEAVSADL--------- 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K     +LFL      L+     GGRAA+++    LF   +     +IR+ ++E
Sbjct: 290 --LKVTKTKKTELLFLALFLRILKK----GGRAAVIVPDGVLF--GSSKAHKQIRKEIIE 341

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           N+ ++A++++P+ +F     ++T + I +   +     KV   +   +     +   KR+
Sbjct: 342 NNKLDAVISMPSGVFKPYAGVSTAILIFTKTGSG-GTDKVWFYD---MKADGLSLDDKRQ 397

Query: 443 IINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            I D+    I++ +        R+    S  +           +        + +     
Sbjct: 398 EIADNDIPDIIERFNHLDAETDRKRTDQSFFVPVDEIVSNDYDLSINKYKEIVYEAVQYE 457

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +  I             L  LK ++ 
Sbjct: 458 PTDVIIGKIDALESEIQGELAELKKLLD 485


>gi|116754514|ref|YP_843632.1| type I restriction-modification system specificity subunit
           [Methanosaeta thermophila PT]
 gi|116665965|gb|ABK14992.1| type I restriction-modification system specificity subunit
           [Methanosaeta thermophila PT]
          Length = 196

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)

Query: 4   FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
             G    + NFIW  A+D L   +    +  VILP T++RRL+  LEPT+ AV +   + 
Sbjct: 2   ENGQITWITNFIWGIADDVLRDLYVRGKYRDVILPMTVIRRLDAVLEPTKQAVLDMKASL 61

Query: 63  GGSNI--DLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFSDNAKAIFE 116
             + I     +  + AG +FYNTS ++L  L +  +R     +  +Y+  FS N + I +
Sbjct: 62  DKAGIVHQDAALRQAAGQAFYNTSPFTLRDLKARASRQQLEADFRAYLDGFSPNVQEIID 121

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV--------------PDRVMSNIYEHL 162
           +F+F + I RL KA  L  + + F    ++                   +  M  I+E L
Sbjct: 122 NFEFRNQIPRLAKADALGTLIEKFLDPSINLSPYPVLNSDGSVRLPGLDNHAMGTIFEEL 181

Query: 163 IRRFGSEVSEGAEDF 177
           +RRF  E ++   + 
Sbjct: 182 VRRFNEENNKEVGEH 196


>gi|182626301|ref|ZP_02954057.1| type I restriction enzyme M subunit [Clostridium perfringens D str.
           JGS1721]
 gi|177908399|gb|EDT70941.1| type I restriction enzyme M subunit [Clostridium perfringens D str.
           JGS1721]
          Length = 487

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/489 (16%), Positives = 180/489 (36%), Gaps = 73/489 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+   E T+ A         G + D           +   S    +       +
Sbjct: 35  LLFIKGLDDV-ETTKEA----EATLLGVDFDRTFPEDKQDLRWSKFSNEGDAKKMYDIVQ 89

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           N +  +I +   N ++ +  +     I ++    +L KI    +GIE       +    +
Sbjct: 90  NKVFPFIKNLHGNKESAYAKY-MEDAIFKIPTPLMLSKIVDGINGIEF---KKENDTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +     +     F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKLS--SAGTNGQFRTPRHIIDMIVKLM----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  +         +     + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHNDLFYVQGLKEHFNNTMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     ++F   L+NPPF    + +  + +              + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKEKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IR+ ++EN  +EAI
Sbjct: 296 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRKEIVENHKLEAI 349

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +   +     KV   +   +     +   KR  + ++  
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKTGSG-GTDKVWFYD---MKADGFSLDDKRNPVEENDI 405

Query: 450 RQILDIYVSRENGKFSRMLDYRTF----------------GYRRIKVLRPLRMSFILDKT 493
             I++ + + EN +  +  +   F                 Y+ I+    +  +  +   
Sbjct: 406 NDIIERFSNLENEEDRKRTEQSFFVPVKEIRDNGYDLSINKYKEIEYEEVVYDAPSVILE 465

Query: 494 GLARLEADI 502
            +  LE +I
Sbjct: 466 RIKELENEI 474


>gi|323136162|ref|ZP_08071244.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocystis sp. ATCC 49242]
 gi|322398236|gb|EFY00756.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylocystis sp. ATCC 49242]
          Length = 487

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 94/527 (17%), Positives = 180/527 (34%), Gaps = 78/527 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
           ++ L N +W+    L        + + +   T L  L+   E  R   +    A  G  I
Sbjct: 4   SSDLVNKLWRLCAVLRK--DGVTYQQYVTELTYLLFLKMMAEQKREEGKIPQGARWGDLI 61

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
             E   ++A Y                    +L           +AI     F++    +
Sbjct: 62  AEEGVRRLALYR---------------KILADLGDPQQKRDRAVQAI-----FANAATFI 101

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            +   L K+      +    +        ++YE L+++   E   GA  + TPR ++ L 
Sbjct: 102 REPVNLDKLIGAIDDLHWFTEERDS--FGDLYEGLLQKNAEETKRGAGQYFTPRVLIELL 159

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPI 239
             LL          +P     + DP  GTGGFL  A  ++               +    
Sbjct: 160 VRLL----------APQPGEIIQDPAAGTGGFLIAANRYMRAKTDDFFDLAPKAQEFQLK 209

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G E     + + +  + +  ++S        +I+ G TLS       +    L+NP
Sbjct: 210 HALQGMENVEGVYRLLLMNLFLHGVDSW-------HIELGDTLSPAGAAMNKADVILTNP 262

Query: 300 PFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PFG    +  +D +                  +S   + F+ H    L+     GGRAA+
Sbjct: 263 PFGPAGGKPSRDDITV-------------TATVSSYQLPFVEHCIRTLKP----GGRAAV 305

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE- 417
           V+  + LF    G    E+RR L++   +  I+ LPT +F+   + T +   S  + +  
Sbjct: 306 VVPDNVLFEDGRG---RELRRMLMDYCNLHTILRLPTGIFYAQGVKTNVIFFSKGEADSG 362

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           +  KV + +      ++   G K   +  +        + +  NG+  R  +     +RR
Sbjct: 363 QTKKVWIYDLR---ANMPAFG-KTSPLTPEHFADFERAFGADPNGRAKRNDEGEEGRFRR 418

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                   ++   D   ++ L       + S       +  +   ++
Sbjct: 419 FTREE---IAARGDNLDISWLRDTSADAEDSLSEPEELIAAILGHLK 462


>gi|54308990|ref|YP_130010.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium
           profundum SS9]
 gi|46913420|emb|CAG20208.1| putative type I restriction enzyme EcoEI Mprotein [Photobacterium
           profundum SS9]
          Length = 500

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 97/462 (20%), Positives = 177/462 (38%), Gaps = 56/462 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L    + I  +   +         +   L    +    
Sbjct: 33  LLFLKVFDA-----QEEELEFELDDYRAPIPEQYLWRNWAADKQGMTGDELLEFVNDRLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +L++  A    N +       FS     ++   LL ++    + I+   DT    +  +
Sbjct: 88  YDLKNLTAPIDKNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DTDERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR +      +            P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAITKFIVKV----------TDPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV +                HG E +   H +C   ML+  +E         
Sbjct: 195 GFLACSFDHVQNNYVKSAGDHKTLQSQIHGVEKKQLPHLLCTTNMLLHGIEI------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIKHGNTLAKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
              LFL  +   L  P NG  GGRAA+VL    LF        ++I++ L E   +  IV
Sbjct: 300 ---LFLQLIIEILASPVNGQKGGRAAVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIV 353

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            LP  +F  + T I T +   +  K  +    V        + +      K + +  ++ 
Sbjct: 354 RLPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPAGVKNYSKTKPMKFEEF 407

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           +  L+ + + E+G  SR+ + +     ++ +   +  +F LD
Sbjct: 408 QTELEWWGNEEDGFASRIKNNQA---WKVSIDEIIERNFNLD 446


>gi|302037934|ref|YP_003798256.1| type I restriction-modification system, methyltransferase subunit
           [Candidatus Nitrospira defluvii]
 gi|300605998|emb|CBK42331.1| Type I restriction-modification system, methyltransferase subunit
           [Candidatus Nitrospira defluvii]
          Length = 484

 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 159/462 (34%), Gaps = 85/462 (18%)

Query: 38  FTLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYS--------------- 79
              L+ L+   +      +   ++Y          ES+    G                 
Sbjct: 32  LLFLKYLDALEQDKADEAKLEGKRYSFILEKPYRWESWAAPKGKDGKLDHDVALTGNDLT 91

Query: 80  -FYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
            F N   +  L +     +  N   Y          IF +        +++    L +I 
Sbjct: 92  EFVNLKLFPYLYSFKQKASGPNTIEY------KIGEIFGEIK-----NKIQSGYNLREII 140

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            +   +           +S++YE  I+  G        ++ TPR ++     ++      
Sbjct: 141 DHIDELRFR-SQKEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMVQVV------ 192

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHA 253
                P +   +YD  CG+ GFL +A +++   G       K       +G+E +   + 
Sbjct: 193 ----KPKLGERIYDGACGSAGFLCEAYDYLTAKGDLSTKDLKTLQEKTFYGKEKKSLAYV 248

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKD 310
           + +  M++  +E       + NI   +TL++   D+    R+   L+NPPFG K  K+  
Sbjct: 249 IAIMNMILHGIE-------APNIIHTNTLTENLADIQEKDRYDVVLANPPFGGKERKEVQ 301

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                              +  + + LFL H    L+     GGR  +V+ ++ L N   
Sbjct: 302 QNFPI--------------RTGETAFLFLQHFIKSLK----AGGRGGVVIKNTFLSNTDN 343

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            S    +R+ LLE+  +  ++  P   F    + T +          +    QL      
Sbjct: 344 AS--VSLRKLLLESCNLHTVLDCPGGTFQGAGVKTVVLFFEKGAPTCKVWYYQL------ 395

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
               R+ G K   +NDD  ++ + +  S  +   S  ++ + 
Sbjct: 396 -DPGRSLG-KTNPLNDDDLKEFVKLQKSFADSPKSWSINAKD 435


>gi|169634836|ref|YP_001708572.1| DNA methylase M, host modification [Acinetobacter baumannii SDF]
 gi|169153628|emb|CAP02820.1| DNA methylase M, host modification [Acinetobacter baumannii]
          Length = 509

 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 155/453 (34%), Gaps = 81/453 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
              ++   IW     L GD             T  + +               L    + 
Sbjct: 2   KQDTVIQKIWSLCNILRGD-----------GITYYQYVSE---------LSYLLFLKIAQ 41

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-AIFEDFD-FSSTI 124
            +    +   GY +       L            +  +     N +  +  D   F +T+
Sbjct: 42  ENGSEILIPEGYRW-----ADLEAHEEEGLLGFYQEMLTHLGANVENEVIRDIYAFPTTV 96

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                +  L  +    S IE H   V      ++Y  LI +   +   GA  + TPR ++
Sbjct: 97  --FSHSENLKAVIDGISEIEWH--QVGKDGFGDLYSGLIDKSAQDTRSGAGQYFTPRSLI 152

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH- 243
           +    L+           P +   + DP  G+GGFL  A +++    S  +       + 
Sbjct: 153 NSIIRLI----------QPNLGDLIQDPATGSGGFLVSADSYIRTKSSQEEYQASPPKYQ 202

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G E+E  T  +C+    +  L+         NI  G  L+ D+         L+NPPFG 
Sbjct: 203 GVEIEKNTRRICLMNTFLHHLD--------ANIVYGDALTDDVLKLDDPDIILANPPFGN 254

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           K    +                  LP   ++  + FL H+   L+     GGRAA+VL  
Sbjct: 255 KAGSQRPLRSD-------------LPFPNTNKQLAFLQHIYLSLK----AGGRAAVVLPD 297

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS------NRKTE 416
           + LF    G   +++R+ L+    +  I+ LPT +F+   + T +   +        + E
Sbjct: 298 NVLFESGIG---TDVRKDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSTKDKHQQE 354

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
                V + +     T++ + G KR    +   
Sbjct: 355 NCTENVWIYDLR---TNMPSFG-KRTPFGNADI 383


>gi|163748971|ref|ZP_02156222.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella
           benthica KT99]
 gi|161331347|gb|EDQ02235.1| putative type I restriction enzyme EcoEI Mprotein [Shewanella
           benthica KT99]
          Length = 495

 Score =  187 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 98/537 (18%), Positives = 185/537 (34%), Gaps = 64/537 (11%)

Query: 10  SLANFIWKNAEDLWGD--FKHTDFGKVILP----FTLLRRLECALEPTRSAVREKYLAFG 63
           S+++ I    + +  D            L        L+  +      +    E   +  
Sbjct: 2   SISSVIKSIQDIMRKDAGIDGDAQR---LGQMSWLLFLKIFDA-----QEEELEFEQSDY 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            S +  +   +         +   L    +      L++  A    N +        S  
Sbjct: 54  QSPLPEQFLWRNWAADNQGITGEELLYFVNNKLFVELKNLYAPLDINPRGFVVKEALSDA 113

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++   LL ++    + I+         +  ++YE +++   S  +  A +F TPR +
Sbjct: 114 FNYMKNGTLLRQVINKLNDIDFTNSE-ERHLFGDLYEQILKDLQSAGN--AGEFYTPRAI 170

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----I 239
                  +           P +  ++ DP CGTGGFL  + +HV +    +         
Sbjct: 171 TRFIVDRI----------DPKLGESILDPACGTGGFLACSFDHVKNNYIKNNTTDLPILQ 220

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSN 298
              HG E +   H +C   ML+  +E          I+ G+TLSK        +   ++N
Sbjct: 221 RQIHGVEKKQLPHLLCTTNMLLHGIEV------PTQIKHGNTLSKPLSSWDDEYDIIVTN 274

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP--PNGGGRA 356
           PPFG     ++D +EK        R         + + LFL  +   L+ P     GGRA
Sbjct: 275 PPFGG---TEEDGIEKNFPTEYRTR---------ETADLFLQLIIEVLKEPSAGKEGGRA 322

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT 415
           A+VL    LF        ++I++ L E   +  IV LP  +F   T+I T +   +  K 
Sbjct: 323 AVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRLPNGVFAPYTSIKTNILFFTKGKP 379

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
                KV        + +      K + +   + +  +D + +  +G  SR    +    
Sbjct: 380 ---TTKVWFYE--HPYPAGVKSYNKTKPMKFAEFQTEIDWWGTEADGFASRKTTEQA--- 431

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
            ++ +   +  +F LD       E      +      S     ++ +  Q+     A
Sbjct: 432 WQVSIDDIIARNFNLDIKNPHVGEVISHDPQELLADYSKQQADIQALRDQLKDILSA 488


>gi|315222635|ref|ZP_07864524.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
 gi|315188321|gb|EFU22047.1| N-6 DNA Methylase [Streptococcus anginosus F0211]
          Length = 325

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/264 (25%), Positives = 122/264 (46%), Gaps = 32/264 (12%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTGG L +A+ H+ D     K       +GQE    T A+    + +             
Sbjct: 32  GTGGMLIEAIRHIGD-----KQMTYGRIYGQENNLSTSAIARMNLFLHG-------ASDF 79

Query: 275 NIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            + QG TL    F      ++F+  L+NPPFG+     +       ++ + GR   G P 
Sbjct: 80  KVAQGDTLRTPKFIEHGQLQKFNCVLANPPFGQ-----EKWGADSFESDKYGRNMWGCPS 134

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+    +L H+   ++      G+ A+VL    LF+      E +IR  L+++DLIEA+
Sbjct: 135 DSNADFAWLQHMIKSMKPMD---GKVAVVLPQGVLFHNGK---EGDIREQLIKSDLIEAV 188

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           VAL   +F+ T ++  +  L+N K  E +GKV LI+AT+++T  R     + ++ ++   
Sbjct: 189 VALAGGVFYGTGVSACILFLNNHKRPEHKGKVCLIDATNIYTPKRA----QNLMEENDIN 244

Query: 451 QILDIYVSRENG-KFSRMLDYRTF 473
           ++  +Y   ++  +  +++     
Sbjct: 245 EVFKLYQEYKDVIEKCKIVSIADL 268


>gi|1841495|emb|CAA71895.1| StySKI methylase [Salmonella enterica]
          Length = 493

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 94/508 (18%), Positives = 182/508 (35%), Gaps = 58/508 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNNYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     ++E            
Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQVETVSHDPDELLAQ 464

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKES 539
            +   + ++ +  Q+     A    KE+
Sbjct: 465 YAKQQEAIQTLRHQLRDILGAALSGKEA 492


>gi|294850060|ref|ZP_06790798.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus A9754]
 gi|294823194|gb|EFG39625.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus A9754]
          Length = 311

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 73/327 (22%), Positives = 117/327 (35%), Gaps = 48/327 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPEDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 284

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           L    F G  F   ++NPP+  KW  D
Sbjct: 285 LENPAFLGNTFDAVIANPPYSAKWTAD 311


>gi|316932986|ref|YP_004107968.1| adenine-specific DNA-methyltransferase [Rhodopseudomonas palustris
           DX-1]
 gi|315600700|gb|ADU43235.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Rhodopseudomonas palustris DX-1]
          Length = 484

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 97/470 (20%), Positives = 159/470 (33%), Gaps = 64/470 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +  SL   +W  A  L         +   I     L+  E           E+    G +
Sbjct: 2   NPQSLVAKVWNFAHVLRDQGVSYQAYISQISYLLFLKMDE-----------ERVAQIGEA 50

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           ++  +                 +  L            +   S     I     F     
Sbjct: 51  SMLPDGARWA-----------DIKELSGEALGATYGKLLEKLSKQP-GIIGAI-FLKAQN 97

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            ++    L ++     G       +P  V  +IYE L+ R   +V  GA  + TPR V+ 
Sbjct: 98  EIQDPAKLKRLVGLIDGETWL--ALPVDVKGSIYEGLLARNAEDVKSGAGQYFTPRPVIE 155

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----ILV 241
               L+           P   +T++DP CGT GFL  A  H+                  
Sbjct: 156 AMVTLV----------DPKPHQTVHDPACGTAGFLLAAWEHMKKHPKARDRRVYSELKNK 205

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G ++ PE   +    + +  +        +K+   G         GK F   L+NPPF
Sbjct: 206 FSGVDIVPEVVRLAAMNLYLHGITGVDSIVEAKDALLG-------AGGKSFDVVLTNPPF 258

Query: 302 GKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           GKK      +D   ++ E ++ +   F       S+  + FL H+   L       G AA
Sbjct: 259 GKKQSYRIVRDDGEIDSEREDYDRQDFFVTT---SNKQLNFLQHIMTVLAP----NGEAA 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF G A  GE+ IRR LL+N     ++ LPT +F++  +   +      K   
Sbjct: 312 VVLPDNVLFEGGA--GET-IRRRLLQNFDFHTLLRLPTGIFYKQGVKANVLFFDK-KPPS 367

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                + +   DL T+ R    K R +        +  Y S    + +  
Sbjct: 368 ETASTKELWIYDLRTNQR-FTLKERPMVRADLDDFVACYRSGHRAERAET 416


>gi|242278889|ref|YP_002991018.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
 gi|242121783|gb|ACS79479.1| N-6 DNA methylase [Desulfovibrio salexigens DSM 2638]
          Length = 489

 Score =  186 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 169/459 (36%), Gaps = 72/459 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTL 91
              L+ L+  LE  R+   E         ID E      +  K A  SF + S  +   L
Sbjct: 32  MLFLKYLDD-LEAARAEDEELRGNDYEFIIDAEHRWSSWAAPKNADGSFDHDSALTGDDL 90

Query: 92  GSTNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELH 146
             T     L  Y+  F   + +A  I       F     + +    L    +    ++  
Sbjct: 91  I-TYVDEELFPYLKGFKQRASSADTIEYKIGEIFGEIKNKFQSGYSLRDALELMDKLQFK 149

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   +S++YE  I+  G        ++ TPR ++     +           SP + 
Sbjct: 150 -SQKEKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIKV----------ASPTIG 197

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---------PILVPHGQELEPETHAVCVA 257
            T+YD  CG+ GFL ++ +H+       +                +G+E +   + + + 
Sbjct: 198 ETIYDGACGSAGFLCESYDHLRYGSDGKEAKLSVDQLRSLQTSTFYGKEKKSLAYVIAIM 257

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            M++  ++       + NI   +TL+    D+    R+   L+NPPFG K  K+      
Sbjct: 258 NMILHGID-------TPNILHTNTLADNLADVQEKDRYDIILANPPFGGKERKEIQQNFP 310

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                          K  + + LFL H    L+     GGRAA+V+ ++ L N    S  
Sbjct: 311 I--------------KTGETAFLFLQHFIKYLK----AGGRAAVVIKNTFLSNSDNAS-- 350

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             +R+ LLE+  +  ++  P   F    + T +          +    QL          
Sbjct: 351 KSLRKELLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAATRKTWYYQL-------DPG 403

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           R+ G K   +NDD  ++ +++   ++  + S ++D++  
Sbjct: 404 RSLG-KTNPLNDDDLKEFIELQKDQQESEKSWVVDFKDV 441


>gi|149189420|ref|ZP_01867705.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1]
 gi|148836778|gb|EDL53730.1| Type I restriction enzyme EcoEI M protein [Vibrio shilonii AK1]
          Length = 504

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 99/468 (21%), Positives = 174/468 (37%), Gaps = 68/468 (14%)

Query: 38  FTLLRRLEC-------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +         L+  R  + E+YL +     D E         F N        
Sbjct: 33  LLFLKVFDAQEEELELELDDYREPIPEEYL-WRNWAADAEGMTGDELLEFVN-------- 83

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
               +    L++Y A    N +       FS     ++   LL ++    + I+   D+ 
Sbjct: 84  ---DDLFPTLKNYAAPIDKNPRGFVAKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSN 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  +IYE +++   S  +  A +F TPR V       L           P +  ++ 
Sbjct: 140 ERHLFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGESIM 187

Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP  GTGGFL  + +HV +                HG E +   H +C+  M++  +E  
Sbjct: 188 DPATGTGGFLACSFDHVKNNYVKTAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV- 246

Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   I+ G+TL+K         +   +NPPFG     ++D +EK        R   
Sbjct: 247 -----PVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR--- 295

Query: 327 GLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                 + + LFL  +   L+       GGRA +VL    LF        ++I++ L E 
Sbjct: 296 ------ETADLFLQLIIEVLDEGSDTKSGGRAGVVLPDGTLFGEGVK---TKIKKMLTEE 346

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +  IV LP  +F   T I T +   +  K  +   +V        +        K + 
Sbjct: 347 CNLHTIVRLPNGVFNPYTGIKTNILFFTKGKPTK---EVWFYE--HPYPEGVKNYSKTKP 401

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           +  ++ +Q +D + S E+G  SR+ +       ++ +   +  +F LD
Sbjct: 402 MKFEEFKQEIDWWGSEEDGFASRVENKHA---WKVSIEEIIERNFNLD 446


>gi|145221399|ref|YP_001132077.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145213885|gb|ABP43289.1| N-6 DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 484

 Score =  186 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 157/440 (35%), Gaps = 66/440 (15%)

Query: 35  ILPFTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           I     +RRL+    LE  ++ +        GS+     + +     F N     +    
Sbjct: 32  ITYLLFIRRLDDLETLEERKARLGAAGELRFGSDQQEFRWSR-----FKNEEPAVMFATV 86

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                  L + +           +D  F      +  A LL ++      I ++      
Sbjct: 87  GEKVFPFLRT-LGGDGSTYGEHMKDARF-----TIPTAQLLSRVVDLLDEIPMN----DR 136

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+L+ +     +     F TPR ++ L   +           +P     + DP
Sbjct: 137 DTNGDLYEYLLSKIA--SAGVNGQFRTPRHIIKLMVDM----------TAPTPADEICDP 184

Query: 213 TCGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             GT GFL  A  ++ +            K     + HG + +     +    ML+  +E
Sbjct: 185 AAGTAGFLVAASEYIREQHPSVLTDGAKRKHFHASMFHGYDFDNTMLRIASMNMLMHGIE 244

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  S +I+   +LS+      +++   L+NPPF    + +  + + +         
Sbjct: 245 -------SPDIRYRDSLSEGASDDAEKYTLILANPPFAGSLDYESTSKDLQR-------- 289

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              + K     +LF+      L+     GGRAA+++    LF   +     ++RR L+E+
Sbjct: 290 ---VVKTKKTELLFVALFLKLLKP----GGRAAVIVPDGVLF--GSSKAHKDLRRMLVED 340

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             ++ IV LP+ +F     ++T + + +   +     +V   + T       +   KR  
Sbjct: 341 QKLDGIVKLPSGVFRPYAGVSTAILLFTKTNSG-GTDQVWFYDVTADG---FSLDDKRNP 396

Query: 444 INDDQRRQILDIYVSRENGK 463
           +  +    +L  + SR   +
Sbjct: 397 VEANDLPDLLSRWGSRTGSE 416


>gi|200387513|ref|ZP_03214125.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|238910689|ref|ZP_04654526.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|199604611|gb|EDZ03156.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 489

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 91/495 (18%), Positives = 176/495 (35%), Gaps = 58/495 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNNYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +    +        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---DIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     + E            
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQAETVSHDPDELLAQ 460

Query: 512 QSFWLDILKPMMQQI 526
            +   + ++ +  Q+
Sbjct: 461 YAKQQEAIQTLRHQL 475


>gi|307638193|gb|ADN80643.1| typeI restriction-modification system DNA-methyl transferase
           subunit M [Helicobacter pylori 908]
 gi|325996788|gb|ADZ52193.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
 gi|325998380|gb|ADZ50588.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           2017]
          Length = 301

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/343 (22%), Positives = 129/343 (37%), Gaps = 58/343 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                   
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
             N +        G  FY   E  L+  G     + L   IA  ++  + K + +  DF+
Sbjct: 45  AKNNNFSEIEVPQG-CFY---EDILALEGDKEIGDKLNKIIAKIAERNDLKGVIDSVDFN 100

Query: 122 STIARLEKA----GLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAED 176
               +L +       L  + K F+ + L       D ++ + YE+L+R F SE  +    
Sbjct: 101 DN-TKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYEYLMRHFASESGKSKGQ 159

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP +V        L        E+    +++YDPTCG+G  L  A +           
Sbjct: 160 FYTPSEVSL------LLSLLLGIDENTKQDKSIYDPTCGSGSLLLKASSLA--------G 205

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSKDLFTG----K 290
              L  +GQE +  T A+C   M++           + +I +G  STLS  LF      K
Sbjct: 206 KKGLTIYGQEKDISTTALCKMNMILHN-------SATADIAKGGFSTLSNPLFIKNGMLK 258

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPK 330
            F Y ++NPPF  K   D  +++ + K        RF  G P 
Sbjct: 259 TFDYVVANPPFSLKNWTDGLSIDPKSKAVVGDSFNRFEDGTPP 301


>gi|325917800|ref|ZP_08179982.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325535974|gb|EGD07788.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 489

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 93/509 (18%), Positives = 169/509 (33%), Gaps = 81/509 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTSEY-SLS 89
              L+ L+   E     + E Y +       +     D E        +F +   +  L 
Sbjct: 33  MLFLKILDDR-EQEWELIHEDYRSPLPQRLRWRNWAADPEGITGDELKNFIDIDLFPELR 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            L   +++         F    + +     F      ++   L+ ++             
Sbjct: 92  DLTPRHSKP------LGFV--VRDV-----FQDAYNYMKSGQLIRQVLNKIQSGVDFNKA 138

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE L+R   S  +  A +F TPR V      ++           P +   +
Sbjct: 139 QERHAFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKV 186

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT A+ H        S  +        G E +P  H +    M++  +E 
Sbjct: 187 MDPACGTGGFLTCAIEHKRQRYVRTSEDEAILQASIFGVEKKPLPHLLATTNMVLHGIEV 246

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    I+  +TL++       G+R    ++NPPFG              ++G    
Sbjct: 247 ------PSQIKHDNTLARPLISWGPGERVDCIVANPPFGGME-----------EDGIESN 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     +  + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL 
Sbjct: 290 FPAAF-RTRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLT 341

Query: 384 NDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
              +  IV LP  +F  + T I T L   +     +    V                 K 
Sbjct: 342 ECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTPTK---DVWFYEHQYPAGYKSYSKTKP 397

Query: 442 RIINDDQRRQI-----LDIYVSRENGKFSRMLDYRTFGYRRIKVL-RPLRMSFILDKTGL 495
             I +    +       D + +R+  KF+  + ++    R   +  +   +   +     
Sbjct: 398 MRIEEFATEEAWWGSEADGFAARQENKFAWKVSFKELQSRNWNLDSKNPHVGQQISHDPN 457

Query: 496 ARLEA----DITWRKLSPLHQSFWLDILK 520
             L +         +L    ++   + L+
Sbjct: 458 QLLRSYAALQCEISELRDQLKAVLAEALE 486


>gi|323157624|gb|EFZ43730.1| hypothetical protein ECEPECA14_0478 [Escherichia coli EPECa14]
          Length = 489

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +  V E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMKTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440


>gi|307289959|ref|ZP_07569887.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498983|gb|EFM68473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 330

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 123/355 (34%), Gaps = 54/355 (15%)

Query: 25  DFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDL 69
               +++   +L     + L   L            E+Y                     
Sbjct: 1   KMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKE 60

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK---------AIFEDFDF 120
           +    +     Y  S   L  + +   +  +           +          +F+D D 
Sbjct: 61  DLIATIVDILGYAISPEYLFNVLADQAKQAIFQLNDLNKAFVQLSSTYNQFNGLFDDVDL 120

Query: 121 SST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            S        ++   + ++ K  + +++        V+ + YE LI +F SE  + A +F
Sbjct: 121 QSKKLGTDEQQRNVTITEVIKKLNDVDVL--GHDGDVIGDAYEFLISQFASEAGKKAGEF 178

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP  V  +   ++         +      +++DPT G+G  + +  N++         P
Sbjct: 179 YTPHMVSDMMAQIVT------LDQKERPFFSVFDPTMGSGSLMLNVRNYLT-------HP 225

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--C 295
             +  HGQEL   T+ +    +++  ++++       NI+ G TL+KD  T + + +   
Sbjct: 226 DNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NIRNGDTLNKDWPTDEPYTFDAV 280

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           + NPP+   W  D   ++         R+G  L   S     FL+H    L+   
Sbjct: 281 VMNPPYSANWSADTTFLDDSR----FNRYG-KLAPKSKADFAFLLHGFYHLKETG 330


>gi|238918025|ref|YP_002931539.1| type I restriction-modification system, M subunit [Edwardsiella
           ictaluri 93-146]
 gi|238867593|gb|ACR67304.1| type I restriction-modification system, M subunit [Edwardsiella
           ictaluri 93-146]
          Length = 495

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 166/466 (35%), Gaps = 70/466 (15%)

Query: 38  FTLLRRLEC---ALEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +     LE  +   R    E++L +     D E     A   F N   +    
Sbjct: 34  LLFLKVFDAQEEELEFEQDNYRCPIPERFL-WRNWAADSEGLTGDALLDFVNNDLFDSLK 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
               N   N   Y+       K       FS     ++   LL ++    + I+   D+ 
Sbjct: 93  NQPANIDLNPRGYV------VKEA-----FSDAFNYMKNGTLLKQVINKLNEIDFT-DSS 140

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  +IYE ++R   S  +  A +F TPR V       +           P +   + 
Sbjct: 141 ERHLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGERVM 188

Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP CGTGGFL  A +HV +                 G E +   H +C   ML+  +E  
Sbjct: 189 DPACGTGGFLACAFDHVKEHYVETAADHQTLQQQILGVEKKQLPHLLCTTNMLLHGIEV- 247

Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   I+ G+TL K            L+NPPFG     ++D +E+        R   
Sbjct: 248 -----PVQIRHGNTLDKPLSSWDSDIDVILTNPPFGG---TEEDGIEQNFPADLRTR--- 296

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              + +D   LFL  +   L+     GGRAA+VL    LF        ++I++ L     
Sbjct: 297 ---ETAD---LFLQLIIEALKK----GGRAAVVLPDGTLFGEGVK---TKIKQLLTSECN 343

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  IV LP  +F   T I T +   +  +  +     Q       + +      K + + 
Sbjct: 344 LHTIVRLPNGVFAPYTGIKTNILFFTKGQPTQDVWFYQ-----HPYPAGVKSYSKTKPMK 398

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            ++    +  +    +G F+  ++       ++ +   +  +F LD
Sbjct: 399 FEEFEAEIAWWGDEADG-FAARVENE--QAWKVSIETIIERNFNLD 441


>gi|300114984|ref|YP_003761559.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
 gi|299540921|gb|ADJ29238.1| N-6 DNA methylase [Nitrosococcus watsonii C-113]
          Length = 483

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/508 (19%), Positives = 179/508 (35%), Gaps = 80/508 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLSTL 91
             L+ L+  LE  R A+  +      + I  E+         K A  +F +    +   L
Sbjct: 33  LFLKYLDD-LEQER-AMEAELKGQPYTFIIDEAHRWSRWAAPKQADGAFDHDQALTGDDL 90

Query: 92  GSTNTRNNLESYIASFSD----------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                   L  Y+  F                IF +       ++ +    L  + +   
Sbjct: 91  I-DYVNQELFPYLQGFKQRATAPDTIEYKIGEIFGEIK-----SKFQSGYSLRDVLELVD 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +           +S++YE  I+  G        ++ TPR ++     ++          
Sbjct: 145 QLHFR-SQKEKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRALIQVI---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            P +   +YD   G+ GFL +A  H+    D  S  +       +G+E +   + + +  
Sbjct: 193 QPKIGERIYDGAVGSAGFLCEAYEHLRPQADSVSQLQTLQSRTFYGKEKKSLAYVIGIMN 252

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +E       + NI   +TL++   D     RF   L+NPPFG K  K+       
Sbjct: 253 MILHGIE-------APNILHTNTLAENIRDWQEKDRFEVILANPPFGGKERKEVQQNFPI 305

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         K  + + LFL H    L+     GGRAA+V+ ++ L N    S   
Sbjct: 306 --------------KTGETAFLFLQHFIKTLK----AGGRAAVVIKNTFLSNSDNAS--R 345

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LLE+  +  ++  P   F    + T +          R    QL          R
Sbjct: 346 ALRKELLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAPTRRVWYYQL-------DPGR 398

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           + G K   +ND+  ++ L +  S  +   S  ++ +        V   ++     ++T L
Sbjct: 399 SLG-KTNPLNDEDFKEFLALQPSFADSAKSWSVEVKDI--NPDTVDLSVKNPNKPEETPL 455

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMM 523
              EA I          +  L+ ++ M+
Sbjct: 456 RESEAIIAEMAALDAESAKILEDIRGML 483


>gi|145589316|ref|YP_001155913.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047722|gb|ABP34349.1| N-6 DNA methylase [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 490

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 91/554 (16%), Positives = 186/554 (33%), Gaps = 89/554 (16%)

Query: 10  SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61
           S+++ I    + +  D          +      L     L+  +   E     +++KY +
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWELLQDKYKS 55

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119
                    ++         N    +   L      +   +   + +   + +A      
Sbjct: 56  PLPEKYRWRNWAA-------NAEGMTGDELKQFLDNDLFPALQNLEAKGGHQRAYVIRSV 108

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   L+ ++                 +  ++YE L+R   +  +  A +F T
Sbjct: 109 FEDAYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKI 236
           PR V      ++          +P +   + DP CGTGGFL+ ++ H+          + 
Sbjct: 167 PRAVTEFMVQMV----------NPRLGEKVMDPACGTGGFLSCSIEHIRKQDVKTLEDEA 216

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293
                  G E +P  H +C   M++  ++         NI+  +TL++        +R  
Sbjct: 217 QLQGSIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWGPSERVD 270

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG              ++G    F     +  + + LFL+ +   L+     G
Sbjct: 271 VVVTNPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQMLKP----G 314

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
           GRAA+VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   + 
Sbjct: 315 GRAAVVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPKGVFAPYTAINTNLLFFTK 371

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD-------IYVSRENGKFS 465
               +    V        +        K + +  ++     +        Y  R+ G++S
Sbjct: 372 GIPTK---DVWFYE--HPYPEGVKSYNKTKPMRIEEFEAEKEWWGNEGGAYKGRKEGEYS 426

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                      R+ +      ++ LD      ++ +    +L     +   D +  +  +
Sbjct: 427 ----------WRVSIRDIKDRNYNLDIKNPHIVDREAEDPELLLAQYNLLQDDINRLKSE 476

Query: 526 IYPYGWAESFVKES 539
           +        + K S
Sbjct: 477 LKTVLGQALYAKNS 490


>gi|331000343|ref|ZP_08324024.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
 gi|329572139|gb|EGG53804.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
          Length = 701

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 77/327 (23%), Positives = 131/327 (40%), Gaps = 42/327 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+  IYE+LI +F S   + A +F TP +V  L   ++                ++YDP
Sbjct: 6   DVLGFIYEYLIGQFASSAGKKAGEFYTPHEVSELMAEIVAYSLKDR------ERISVYDP 59

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L      +   G   K    +    QE+   T+ +    +++R +  D     
Sbjct: 60  TSGSGSLLITIGKAIEKQG---KSTDSIRYFAQEIIEATYNLIRMNLVMRGIIRDNISTS 116

Query: 273 SKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           +       TL  D                +SNPP+  KW  D  A +   +N        
Sbjct: 117 NN-----DTLRNDWPRNTLKDEPLLVDAVVSNPPYSLKWNPDGMAADPRFQN-------Y 164

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           GL   S     FL+H    L+      G   IVL    LF G     E  IR  LL+ + 
Sbjct: 165 GLAPKSAADFAFLLHDLYHLKYD----GILTIVLPHGVLFRGGE---EERIRTQLLKLNQ 217

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           I+A++ LP ++FF T I T + +L   + ++    V  I+A+  +  +      +  +  
Sbjct: 218 IDAVIGLPPNIFFGTGIPTIIMVLRKSREQK---DVLFIDASKGFEKVTA----KNKLRA 270

Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRT 472
              R+ ++++  R+  + FSR + +  
Sbjct: 271 RDIRKAVEVWKDRKELEGFSRRVSFEE 297


>gi|283786953|ref|YP_003366818.1| type I restriction modification system HsdM component [Citrobacter
           rodentium ICC168]
 gi|282950407|emb|CBG90057.1| putative type I restriction modification system HsdM component
           [Citrobacter rodentium ICC168]
          Length = 500

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/546 (19%), Positives = 192/546 (35%), Gaps = 69/546 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M+ F+ +   + N +W  A  L  D      G  +   T L      L+     V    L
Sbjct: 1   MSNFSVT--DIVNRVWGYANILRDDGISN--GDYVEQLTFL----IFLKMNAERVSLGKL 52

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                +   +  +K++G S        +S LG +                 + + E   F
Sbjct: 53  KGNIVSDAWDELLKLSGESLLTKYSKIISQLGES-----------------EGLLETI-F 94

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                +++ AG L K+    +            V   IYE ++++      +GA  + TP
Sbjct: 95  YGAQNKIQDAGKLKKLILMINEEVWLSSNFD--VKGAIYEGILQKSADTEKKGAGQYFTP 152

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHK 235
           R ++      +           P  ++T+ DP CGTGGFLT A +++      +    H 
Sbjct: 153 RALIEAIVEAV----------DPEPMQTIADPACGTGGFLTVAHDYIFNKIDKNEVDKHS 202

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G E+      +C   + +  +        S  I     L       K+    
Sbjct: 203 FLRNSTFSGNEISSSVARLCAMNLYLHEI-----GIYSNPISVSDALES--KPSKKVDIV 255

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPFG+K     + ++K   + +  R    + + ++  + FL H+ N L+      G+
Sbjct: 256 LANPPFGRKSTFTIN-IDKSKIDNKYIRDDFWV-ETTNKQLNFLQHICNMLKKD----GK 309

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN--R 413
           AA+V   + LF+  AG    +IRR LL+   +  ++ LPT +F+   +   +    N   
Sbjct: 310 AAVVFPDNILFDSGAG---EKIRRKLLDEYNLHTVLRLPTGIFYAQGVKANVLFFDNCID 366

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           K   R  KV   +             K   +      + + +Y   +    SR     + 
Sbjct: 367 KKRPRTEKVWFYDLRTSIHKTF----KHNKLIRSDFNEFIALYK--KENIESRK-STWST 419

Query: 474 GYRRIKVLRPLRMSFILDKTGL-ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              +         +F  ++  L  +   DI W K    +QS  ++    ++  I     +
Sbjct: 420 DVTKYSTPNGRWRAFSYEEILLRDKANLDIQWLKEDVFNQSENIESSPVLVDSIIELLSS 479

Query: 533 ESFVKE 538
                 
Sbjct: 480 ALDDFR 485


>gi|307824354|ref|ZP_07654580.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacter tundripaludum SV96]
 gi|307734734|gb|EFO05585.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylobacter tundripaludum SV96]
          Length = 594

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/550 (16%), Positives = 178/550 (32%), Gaps = 97/550 (17%)

Query: 10  SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61
           S+++ I    + +  D          +      L     L+  +   E     +++ Y +
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWEILQDNYQS 55

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119
                    ++         N    +   L      +   +   + +   + +A      
Sbjct: 56  PLPEQYRWRNWAA-------NAEGMTGDALKQFLDNDLFPALQQLEAKGGDQRAYVIRSV 108

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   L+ ++                 +  ++YE L+R   S  +  A +F T
Sbjct: 109 FEDAYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQSAGN--AGEFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKI 236
           PR V      ++          +P +   + DP CGTGGFL+ ++ H+          + 
Sbjct: 167 PRAVTEFMVRMV----------NPRLGEKVLDPACGTGGFLSCSIEHIRKQDVLTVDDEA 216

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293
                  G E +P  H +C   M++  ++         NI+  +TL++        +R  
Sbjct: 217 RLQASIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWGPKERVD 270

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG              ++G    F P   +  + + LFL+ +   L+     G
Sbjct: 271 VVVTNPPFGGME-----------EDGIETNF-PATFRTRETADLFLVLIMQMLK----AG 314

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
           GRAA+VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   S 
Sbjct: 315 GRAALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSK 371

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQI----------LDIYVSREN 461
                             +      G K        +  +            D +  R  
Sbjct: 372 GTPTRHI---------WFYEHPYPPGVKNYNKTKPMKIAEFDAEAAWWGKETDGFKQRVE 422

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            +++           ++ +      ++ LD       E +I   +L     +   + +  
Sbjct: 423 NQYA----------WKVGIDDIKARNYNLDSKNPHIGEQEIHDPELLLAQYNTMQNDIAA 472

Query: 522 MMQQIYPYGW 531
           +  Q+     
Sbjct: 473 LRGQLKDILD 482


>gi|188492484|ref|ZP_02999754.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
 gi|188487683|gb|EDU62786.1| type I restriction-modification system, M subunit [Escherichia coli
           53638]
          Length = 489

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +  V E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440


>gi|255308059|ref|ZP_05352230.1| type I restriction modification system M subunit [Clostridium
           difficile ATCC 43255]
          Length = 487

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 82/490 (16%), Positives = 165/490 (33%), Gaps = 73/490 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     T++      L      I  +    +    F N            N  
Sbjct: 35  LLFIKGLDEV--ETKNEAEATLLGVSFERIFDDGHQHLRWSKFSNEGNSEKMYEIVQNEV 92

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +    D+A            I ++    +L KI    S +EL  D        +
Sbjct: 93  FPFIKKLHGNKDSAY----AKYMGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  S         +     + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      +F   L+NPPF    + +  + +              + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G   IR+ +++N  +EAI
Sbjct: 296 TKKTELLFLALFLRVLK----IGGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +         KV   +         +   KR  I D   
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNEIKDSDI 405

Query: 450 RQILDIYV------SRENGKFSRMLDYRTFG----------YRRIKVLRPLRMSFILDKT 493
             I+  +        R+  + S  +D               Y+ +     +  +  +   
Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVIYDAPNVILG 465

Query: 494 GLARLEADIT 503
            +  LE +I 
Sbjct: 466 RVKELEKEIA 475


>gi|260858510|ref|YP_003232401.1| type I restriction-modification enzyme M subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757159|dbj|BAI28661.1| type I restriction-modification enzyme M subunit [Escherichia coli
           O26:H11 str. 11368]
          Length = 493

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +  V E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEVLELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMKTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444


>gi|264677662|ref|YP_003277568.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208174|gb|ACY32272.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 253

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 56/232 (24%)

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           R    L       L ++ TWR+     Q   +   + + ++I    + +    E I  + 
Sbjct: 29  REEIALSPKNRKELLSEATWRE-----QRDIMQAAQQLAEKIGTGEFLDFNRFEDIVDDA 83

Query: 545 AKTLKVKASKSFIVAFINAFGRKDPRADPVT----------------------DVNG--- 579
            K L +K +       +NA   +D RA+ V                       D  G   
Sbjct: 84  LKALGLKLAAPARKQILNAVSWRDERAEKVIKKVHKLNAAKLNDLLNQLGTTRDKLGDYG 143

Query: 580 ----------EWIPDTNLTEYENVPYLES--------IQDYFVREVSPHVPDAYIDKIFI 621
                     E+ PD+ L + ENVP            I DYF+REV PHV +A+I     
Sbjct: 144 YMATPTGEYIEYEPDSELRDTENVPLALDTSLSASSVIHDYFIREVRPHVDEAWIAIDK- 202

Query: 622 DEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                    +GYEI+FN++FYQ++P R L+++ AE+  +EA+   LL+++ +
Sbjct: 203 -------TVIGYEISFNKYFYQHKPLRSLEEVTAEILALEAETDGLLKQLVS 247


>gi|114048354|ref|YP_738904.1| N-6 DNA methylase [Shewanella sp. MR-7]
 gi|113889796|gb|ABI43847.1| N-6 DNA methylase [Shewanella sp. MR-7]
          Length = 500

 Score =  185 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 170/514 (33%), Gaps = 64/514 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E       S I  E   +         +   L    +    
Sbjct: 33  LLFLKIFDA-----QEQELEFEQDDYRSPIPSEYLWRHWAEDKEGITGDELLEFVNNALF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +L++  A    N +       FS     ++   LL ++    + ++   D+    +  +
Sbjct: 88  VDLKNLTAPKDTNPRGYVVKEAFSDAFNYMKNGTLLRQVINKLNEVDFT-DSSERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       +          +P +   + DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTKFMVNRI----------NPQLGEKVLDPACGTG 194

Query: 218 GFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFL  A+ H+    S            HG E +   H +C   ML+  +E          
Sbjct: 195 GFLACAVEHLKAQVSTAAQHQQLQQQIHGVEKKQLPHLLCTTNMLLHGIEV------PVQ 248

Query: 276 IQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           I+ G+TLS+            ++NPPFG     ++D +EK        R      + +D 
Sbjct: 249 IKHGNTLSQPLSSWDNDVDVIITNPPFGGT---EEDGIEKNFPADMQTR------ETAD- 298

Query: 335 SMLFLMHLANKLEL---PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
             LFL  +   L+        GGRAA+VL    LF        ++I++ L E   +  IV
Sbjct: 299 --LFLQLIIEVLKDGSASNGKGGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIV 353

Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN-DDQR 449
            LP  +F   T I T +   +  +  +    V        +        K + +  ++  
Sbjct: 354 RLPNGVFAPYTGIKTNILFFTKGQPTK---DVWFYE--HPYPDGVKNYSKTKPMKFEEFE 408

Query: 450 RQI------LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
            +I       D + SR   + +  +           V R   +       G         
Sbjct: 409 AEIAWWGYEADGFASRVENEHAWKVSIDE------IVARNFNLDIKNPHVGEQISHDPDE 462

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
                   Q+    +   +   +      ++  K
Sbjct: 463 LLARYATEQAEIQTLRDQLKAILGDALGKDAVKK 496


>gi|149203576|ref|ZP_01880545.1| N-6 DNA methylase [Roseovarius sp. TM1035]
 gi|149142693|gb|EDM30735.1| N-6 DNA methylase [Roseovarius sp. TM1035]
          Length = 495

 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 153/477 (32%), Gaps = 91/477 (19%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD----FKHTDFGKVI--LP-FTLLRRLECALEPTRS 53
           M   T     +   +W+ A+ L G              +  L     L+ L    E T  
Sbjct: 1   MNPNTA---DIVAKLWREAKTLQGAGISIM------HYVNELTYLLFLKML----EETGQ 47

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
                               K  G       +  L  LG     +N             A
Sbjct: 48  T------TLIPPAYSWTELSKAEGGDQLRYYKKLLLDLGDPEIVHN---------PMVLA 92

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I     F+  I  L +   L  +  N   I+       +  + ++YE L+++  S+    
Sbjct: 93  I-----FTDAITHLREPKDLKTLTTNIDKIDWFTAR--EDGLGDMYEGLMQKVMSDTKSK 145

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  + TPR ++     L+           P     + DP  GTGGFL  A  ++ D    
Sbjct: 146 AGQYFTPRALIDSIIRLI----------QPQPGEVIQDPATGTGGFLIAADRYIKDATDD 195

Query: 234 --------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +        G E  P+T  +CV  ML+  +ES              + +  
Sbjct: 196 LFKLSEDQGRFQRRQAFRGHEWVPDTRRLCVMNMLLHGIESLVG--------CEDSCAPQ 247

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                R    L+NPPF K           +       R GP         M FL H    
Sbjct: 248 GEALGRADVILTNPPFNKMPGG---VNRPDFTLTAGERVGP---------MPFLEHAIRM 295

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+     GGR AIV+  + LF    G   +E+RR+L+ N  +  I+ LPT +F+   + T
Sbjct: 296 LKP----GGRCAIVMPDNILFGDGLG---TELRRFLMVNCNLHTILRLPTGIFYAQGVKT 348

Query: 406 YLWILSN--RKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVS 458
            +   +    K      KVQ   A   +    N     K   +      +   ++ S
Sbjct: 349 NVMFFTRVTDKVYPANHKVQGTQAVWFYDLRTNMPSFGKTNALTAQHFEEFERLFGS 405


>gi|167970986|ref|ZP_02553263.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
 gi|186701152|gb|EDU19434.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 6 str. ATCC 27818]
          Length = 367

 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 154/381 (40%), Gaps = 44/381 (11%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V  + YE+L+  + +   +   +F TP++V  L   L L   +   K+    I  +YDP
Sbjct: 19  DVFGDAYEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDP 78

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L            + K+   +  +GQE+   T+ +    M +  +  D     
Sbjct: 79  CCGSGSLLL----------KYAKLNEGVKFYGQEINLTTYNLARINMFLHNIGYDK---- 124

Query: 273 SKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPK 330
             +I+ G TL        + F   +SNPP+  KWE   + +          RF    L  
Sbjct: 125 -FDIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLLAN-----DERFHVTQLAP 178

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEA 389
                  F++H+ + L       G AAIV+    L+   A   E +IR++L    +++++
Sbjct: 179 KGKADFAFVLHILHNLSSS----GTAAIVMFPGTLYRDHA---EQDIRKYLVDNVNVVDS 231

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++ LP +LFF T+I+T + +L   K        +  ++A+  +      G K   + +  
Sbjct: 232 VIQLPDNLFFGTSISTCIIVLRKNKNNNDNANGILFVDASKEFV---KSGIK-NKLTNAN 287

Query: 449 RRQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            ++I+D    ++   + S+++             +    +  ++        ++    KL
Sbjct: 288 IKKIVDTIRFKKEVTYFSKLVSREEV--------KNKNYNLSVNTYVEKEDTSEKIDIKL 339

Query: 508 SPLHQSFWLDILKPMMQQIYP 528
             +     +  ++ + ++I  
Sbjct: 340 LNMQIKEIVAKIEKLRKEIDE 360


>gi|158522106|ref|YP_001529976.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510932|gb|ABW67899.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 481

 Score =  185 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 153/458 (33%), Gaps = 68/458 (14%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + +AN +W     L       D+G  I   T L  L+ A E        +Y      + 
Sbjct: 1   MSDVANKLWGFCHTLR--HDGIDYGDYIEQLTYLMFLKMAHEKGIDLSAVEYE-----DN 53

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
                +  +   F   S         T+  +   + + + S     +  D  F+  + R 
Sbjct: 54  QETVRLDCSWQPFVEKS--------GTDLLDAFANILRALSRQP-GLLGDI-FTQAMPRF 103

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L K+             +P  V    +E L+ +  +E  +GA  + TPR ++   
Sbjct: 104 TNPVNLKKVINMIDETLW--SEMPVDVKGAAFEGLLEKSAAEGKKGAGQYFTPRALIQSI 161

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------PILV 241
             ++                T+ DP CGT GFL  A   +                    
Sbjct: 162 VTVMRP------DPRKQKDFTICDPACGTAGFLMVAYEWLMAVSKGALDRKEVARIKKQT 215

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             GQEL P    + +  + +  LE          I  G ++ +    G+R+   L+NPPF
Sbjct: 216 YFGQELVPRPRRLALMNLFLHGLE--------PQIYLGDSIYEPD-RGERYDCILTNPPF 266

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G K    +  V  +                S+  + F+ H+   L+     GGRAA+VL 
Sbjct: 267 GTKGAN-QAPVRDDF-----------TVSTSNKQLNFIQHVVTILKP----GGRAAMVLP 310

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERR 419
            + LF   AG        +L+E+  +  ++ LP   F  +   +   +          + 
Sbjct: 311 DNVLFADAAGEVIG----YLMEDCNVHTLLRLPNGTFSPYSQGVKANVIFFQKG---VKT 363

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             + + +     T+I    KK R +      +    Y 
Sbjct: 364 ENIWIYDGR---TNIPGVTKKERPLTPAMFDEFEKCYG 398


>gi|188577907|ref|YP_001914836.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522359|gb|ACD60304.1| type I restriction enzyme EcoEI M protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 489

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 155/462 (33%), Gaps = 76/462 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTSEY-SLS 89
              L+ L+   E     + E Y +       +     D E        +F +   +  L 
Sbjct: 33  MLFLKILDDR-EQEWELIHEDYRSPLPQRLRWRNWAADPEGITGDELKNFIDIDLFPELR 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            L   +++         F    + +     F      ++   L+ ++             
Sbjct: 92  DLTPRHSKP------LGFV--VRDV-----FQDAYNYMKSGQLIRQVLNKIQSGVDFNKA 138

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE L+R   S  +  A +F TPR V      ++           P +   +
Sbjct: 139 QERHAFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKV 186

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT A+ H        +  +        G E +P  H +    M++  +E 
Sbjct: 187 MDPACGTGGFLTCAIEHKRQRYVRTAEDEAILQASIFGVEKKPLPHLLATTNMVLHGIEV 246

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    I+  +TL++       G+R    ++NPPFG              ++G    
Sbjct: 247 ------PSQIKHDNTLARPLISWGPGERVDCIVANPPFGGME-----------EDGIESN 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     +  + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL 
Sbjct: 290 FPAAF-RTRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLT 341

Query: 384 NDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
              +  +V LP  +F  + T I T L   +     +    V                 K 
Sbjct: 342 ECNLHTVVRLPNGVFNPY-TGIKTNLLFFTKGTPTK---DVWFYEHQYPAGYKSYSKTKP 397

Query: 442 RIINDDQRRQI-----LDIYVSRENGKFSRMLDYRTFGYRRI 478
             + +    +       D + +R+  +F+  + +     R  
Sbjct: 398 MRVEEFTVEEAWWGSEADGFAARQENEFAWKVSFDELQRRNW 439


>gi|330992550|ref|ZP_08316498.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1]
 gi|329760749|gb|EGG77245.1| N-6 DNA methylase [Gluconacetobacter sp. SXCC-1]
          Length = 149

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 65/111 (58%), Gaps = 12/111 (10%)

Query: 567 KDPRADPVT----DVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFID 622
           +      V        G+ +PD++L + ENVP  E I  YF REV PH PDA+ID+    
Sbjct: 47  RGEDGKIVLGQRGKAKGKPVPDSSLRDTENVPLDEDIHTYFKREVLPHAPDAWIDEDK-- 104

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
                  ++GYEI FNR+FY ++P R L++IDA+LK V A+I  +L E++ 
Sbjct: 105 ------TKIGYEIPFNRYFYVFEPPRPLEEIDADLKEVTAKIMAMLGELSA 149


>gi|191639033|ref|YP_001988199.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|190713335|emb|CAQ67341.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|327383093|gb|AEA54569.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei LC2W]
 gi|327386277|gb|AEA57751.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei BD-II]
          Length = 329

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/284 (24%), Positives = 118/284 (41%), Gaps = 42/284 (14%)

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +  L T + +   + +         T+YDPT G+G  L +A  +             +  
Sbjct: 1   MSRLITQIAMHGKEDV------RGFTIYDPTMGSGSLLLNARRY-------SNERLSINY 47

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPP 300
            GQEL   T+ +    M++  +  +     ++++    TL +D        F   + NPP
Sbjct: 48  FGQELNTSTYNLARMNMILHGVPIN-----NQHLHNADTLDQDWPIEEPTNFDAVVMNPP 102

Query: 301 FGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           +   W+  K             RF   GL   S     FL+H    L+      G   IV
Sbjct: 103 YSAHWQPSKGTEN-------DPRFVSYGLAPKSKADFAFLLHGYYHLKDT----GVMCIV 151

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           L    LF G A   E  IR+ LLEN  I+ ++ LP ++FF T+I T + +L   K     
Sbjct: 152 LPHGVLFRGGA---EGRIRKALLENGAIDTVIGLPANIFFNTSIPTTVTVL---KKSRTT 205

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             V  I+A+  +   +N    +  + DD  ++IL+ Y++R++  
Sbjct: 206 RDVLFIDASKEFEKAKN----QNHLTDDNIQKILETYINRKDVD 245


>gi|152987952|ref|YP_001351361.1| type I restriction-modification system subunit M [Pseudomonas
           aeruginosa PA7]
 gi|150963110|gb|ABR85135.1| type I restriction-modification system, M subunit [Pseudomonas
           aeruginosa PA7]
          Length = 489

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 160/486 (32%), Gaps = 75/486 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +      R    E       S
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDD-----REQEWELLDDAYRS 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDFDF 120
            I      +         +   L      N    L++ +  +S        + +FE    
Sbjct: 56  PIPESCRWRTWAADPEGITGDELKNFIDNNLFPQLQN-LHEYSTTPAAYVVRGVFE---- 110

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 ++   L+ ++                    ++YE L+R    + +  A +F TP
Sbjct: 111 -DAYNYMKSGQLIRQVINKIQEGVDFNKAQERHAFGDMYEQLLRDL--QNAGNAGEFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIP 237
           R V      ++           P +   + DP CGTGGFLT  + H        +  +  
Sbjct: 168 RPVTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCTIEHKRSRYVKTAEDERV 217

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294
                 G E +P  H +    M++  +E          I+  +TLS+       G+R   
Sbjct: 218 LQASIFGVEKKPLPHLLATTNMILHGIEV------PSQIKHDNTLSRPLISWGPGERVDC 271

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFG              ++G    F     +  + + LFL+ + + L+     GG
Sbjct: 272 IVANPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMHLLKD----GG 315

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
           RAA+VL    LF     S    I+  LL    +  IV LP  +F  + T I T L   + 
Sbjct: 316 RAAVVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTK 371

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI-----LDIYVSRENGKFSRM 467
               +   +V                 K   I +    +       D + +R   +F+  
Sbjct: 372 GSPTK---EVWFYEHQYPAGYKSYSKTKPMRIEEFAVEEAWWGSEADGFAARVENEFAWK 428

Query: 468 LDYRTF 473
           +     
Sbjct: 429 VSLDEL 434


>gi|268592727|ref|ZP_06126948.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131]
 gi|291311501|gb|EFE51954.1| adenylosuccinate lyase [Providencia rettgeri DSM 1131]
          Length = 490

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 158/405 (39%), Gaps = 53/405 (13%)

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           + +    L++  A    N +       FS     ++   LL ++    + I+    T   
Sbjct: 83  NDDLFPALKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFSNST-ER 141

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE ++R   S  +  A +F TPR V       +           P +  ++ DP
Sbjct: 142 HLFGDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPRLGESIMDP 189

Query: 213 TCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            CGTGGFL  A +HV +     +           G E +   H +C   ML+  +E    
Sbjct: 190 ACGTGGFLACAFDHVKEHYVKTTEDHKTLQQQIFGVEKKQLPHLLCTTNMLLHGIEV--- 246

Query: 270 RDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 I+  +TL+K      ++F   ++NPPFG     ++D +EK        R     
Sbjct: 247 ---PVQIRHDNTLNKPLSAWDEQFDVIITNPPFGG---TEEDGIEKNFPAEMQTR----- 295

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            + +D   LFL  +   L       GRAA+VL    LF        ++I++ L E   + 
Sbjct: 296 -ETAD---LFLQLIIEVLSDK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLH 344

Query: 389 AIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
            IV LP  +F  + T I T +   +  +  +   ++        +        K + +  
Sbjct: 345 TIVRLPNGVFNPY-TGIKTNILFFTKGQPTK---EIWFYE--HPYPEGVKNYSKTKPMKF 398

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           ++ +  +D + +  +G  SR  + +     ++ +   +  +F LD
Sbjct: 399 EEFQTEIDWWGNEADGFASREENNQA---WKVSIDEIIARNFNLD 440


>gi|332141624|ref|YP_004427362.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332143450|ref|YP_004429188.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551646|gb|AEA98364.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553472|gb|AEB00191.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 713

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/609 (18%), Positives = 196/609 (32%), Gaps = 104/609 (17%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRS-- 53
            +A  L   +  + + +       GD          LP       L+ L+  LE  R   
Sbjct: 12  TTAQQLGAIVKSSRQIMRKDKGLNGDLDR-------LPMLTWIMFLKFLDD-LEQMRETE 63

Query: 54  AVRE--KYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR--NNLES 102
           AV E   +     +      +  + G        +F N  E  +   G+        L S
Sbjct: 64  AVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAFINNDEA-MRPDGTRGIGLFAYLRS 122

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                  + + +     F     R+    LL  +    +GI     +     +S +YE +
Sbjct: 123 LQGDNGGDRRDVIATV-FKGMQNRMINGYLLRDVVDKINGIHF-NSSEEMHTLSRLYETM 180

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R         + +F TPR VV     ++           P +  ++ DP CGTGGFL +
Sbjct: 181 LREMRDAAG-DSGEFYTPRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVE 229

Query: 223 AMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           A  H+          ++       G E +   + +    +L+  LE          I   
Sbjct: 230 AFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-------PRIDPE 282

Query: 280 STLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           ++L   L       R    LSNPPFG            E + G LG F   +       +
Sbjct: 283 NSLRFPLREMGDKDRVDVILSNPPFG-----------GEEEKGILGNFPEDMQTAETVQL 331

Query: 337 LFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            FL  +  KL+   NG   GGRAA+V+  S L++G        +R+ LL +  +  I+ L
Sbjct: 332 -FLQLIMRKLKRKGNGSVTGGRAAVVVPESVLYDGGVAQ---RVRKQLLSDFNLHTIIRL 387

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR------RIIN 445
           P  +F  +  +I + +         +     Q          +   G K         + 
Sbjct: 388 PKGVFEPYS-DIQSNILFFDRNGPTKGVWFYQ------HEVPVERRGMKNPCYTVTNALK 440

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRT-------FGYRRIKVLRPLRMSFILDKTGLARL 498
           +++  +I   Y S    +++  +           F +R  +  +         +  L+  
Sbjct: 441 EEEMAEIRTWYESPCESEYAWFVPSEDIRSKDFSFDFRNPRKEQQELKDPEHLQQALSSY 500

Query: 499 EADITWRKL---SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA--- 552
            + I        S  H    +D       +I  +        E     + K + VK    
Sbjct: 501 LSRIENSNANFQSESHTIRNIDKKSWNEFKIGDFLIRSKNSIELEDDVDYKQITVKLYGK 560

Query: 553 SKSFIVAFI 561
                   +
Sbjct: 561 GAVLRKTIL 569


>gi|13357655|ref|NP_077929.1| type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170762197|ref|YP_001752181.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|183508500|ref|ZP_02689853.2| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
 gi|11357066|pir||E82933 type I restriction enzyme M protein, truncated homolog UU098
           [imported] - Ureaplasma urealyticum
 gi|6899053|gb|AAF30504.1|AE002110_2 type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827774|gb|ACA33036.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 3 str. ATCC 27815]
 gi|182675928|gb|EDT87833.1| type I restriction-modification system, M subunit [Ureaplasma
           parvum serovar 14 str. ATCC 33697]
          Length = 348

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 154/380 (40%), Gaps = 44/380 (11%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  + YE+L+  + +   +   +F TP++V  L   L L   +   K+    I  +YDP 
Sbjct: 1   MFGDAYEYLMSMYAANAGKSGGEFFTPQEVSELLVELTLIDFNNENKDVRRKIGKVYDPC 60

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CG+G  L            + K+   +  +GQE+   T+ +    M +  +  D      
Sbjct: 61  CGSGSLLL----------KYAKLNEGVKFYGQEINLTTYNLARINMFLHNIGYDK----- 105

Query: 274 KNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPKI 331
            +I+ G TL        + F   +SNPP+  KWE   + +          RF    L   
Sbjct: 106 FDIKLGDTLLDPKHNDDKPFDAIVSNPPYSTKWEGKSNPLLAN-----DERFHVTQLAPK 160

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAI 390
                 F++H+ + L       G AAIV+    L+   A   E +IR++L    ++++++
Sbjct: 161 GKADFAFVLHILHNLSSS----GTAAIVMFPGTLYRDHA---EQDIRKYLVDNVNVVDSV 213

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQR 449
           + LP +LFF T+I+T + +L   K        +  ++A+  +      G K   + +   
Sbjct: 214 IQLPDNLFFGTSISTCIIVLRKNKNNNDNANGILFVDASKEFV---KSGIK-NKLTNANI 269

Query: 450 RQILDIYVSRENGKF-SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
           ++I+D    ++   + S+++             +    +  ++        ++    KL 
Sbjct: 270 KKIVDTIRFKKEVTYFSKLVSREEV--------KNKNYNLSVNTYVEKEDTSEKIDIKLL 321

Query: 509 PLHQSFWLDILKPMMQQIYP 528
            +     +  ++ + ++I  
Sbjct: 322 NMQIKEIVAKIEKLRKEIDE 341


>gi|218667350|ref|YP_002426004.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519563|gb|ACK80149.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 484

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 92/505 (18%), Positives = 177/505 (35%), Gaps = 71/505 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLST 90
              L+ L+  LE  R A+  +      + I  ++F        K A     +    S   
Sbjct: 32  LLFLKYLDA-LEQDR-AMEAELEGRPYTFILEDAFRWEHWAAPKTADGRMDHHKAMSGDD 89

Query: 91  LGSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIEL 145
           L        L  Y++ F   A     I       FS    +++    L +I +   G+  
Sbjct: 90  LR-DFVNIRLFPYLSGFKRRATGSNTIEYKIGEIFSEIKNKIQSGYNLREIVEIIDGLRF 148

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                    +S++YE  I+  G        ++ TPR ++     ++          +P +
Sbjct: 149 R-SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAIVQVV----------APKV 196

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +YD   G+ GFL +A +++           +       +G+E +   + + +  M++
Sbjct: 197 GEKIYDGAVGSAGFLCEAFDYLKAQPGLTTGDMQTLQERTFYGKEKKSLAYVIAIMNMIL 256

Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             ++       + NI   +TL++   D+    R    L+NPPFG K  K+          
Sbjct: 257 HGID-------APNIVHTNTLAENLMDIQPKDRVDVVLANPPFGGKERKEVQQNFPI--- 306

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      K  + + LFL H    L+     GGRA +V+ ++ L N    S    +R
Sbjct: 307 -----------KTGETAFLFLQHFIRMLK----AGGRAGVVIKNTFLSNTDNAS--VSLR 349

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + LLE+  +  ++ LP   F    + T +          +    QL          RN G
Sbjct: 350 KLLLEDCNLHTVLDLPGGTFQGAGVKTVVLFFDKGAPTRKVWYYQL-------NPGRNMG 402

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            K   +ND+   + + +  ++ +   S  +D      R        +     D+  L   
Sbjct: 403 -KTNPLNDNDLAEFVALQKTKADSPQSWTVDVSGIDTR--TYDLSAKNPNGGDEKVLRSP 459

Query: 499 EADITWRKLSPLHQSFWLDILKPMM 523
           E  +          +  L  ++ ++
Sbjct: 460 EEILDEIAALDAESAEVLAAIRGLL 484


>gi|26991424|ref|NP_746849.1| type I restriction-modification system, M subunit [Pseudomonas
           putida KT2440]
 gi|24986496|gb|AAN70313.1|AE016672_4 type I restriction-modification system, M subunit [Pseudomonas
           putida KT2440]
          Length = 489

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 168/485 (34%), Gaps = 63/485 (12%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +   E     + + Y +    
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-ELEWELMDDNYKSPIPD 59

Query: 66  NIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSST 123
           +    ++     G +     ++  + L       NL  Y  + S    +++FE       
Sbjct: 60  SCRWRTWAADPEGMTGDALKDFIDNNLFPQ--LQNLHEYSNTPSAFVVRSVFE-----DA 112

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++   LL ++                    N+YE L+R    + +  A +F TPR V
Sbjct: 113 YNYMKSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPV 170

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240
                 ++           P +   + DP CGTGGFLT A+ H        +  +     
Sbjct: 171 TEFMVRMV----------DPKLAEKVMDPACGTGGFLTCAIEHKRRRYVKTAEDERTLQA 220

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLS 297
              G E +P  H +    M++  +E          I+  +TLSK        +R H  ++
Sbjct: 221 SIFGVEKKPLPHLLATTNMILHGIEV------PSQIRHDNTLSKPLISWGPSERVHCIVA 274

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG              ++G    F     +  + + LFL+ +   L+     GGRAA
Sbjct: 275 NPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLKD----GGRAA 318

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
           +VL    LF     S    I+  LL    +  IV LP  +F  + T I T L   +    
Sbjct: 319 VVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTP 374

Query: 416 EERRGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            ++      Q       ++  R    +   + +       D + +R    F+  +     
Sbjct: 375 TKQVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSEADGFAARAENAFAWQVSVEEL 434

Query: 474 GYRRI 478
             R  
Sbjct: 435 QARNW 439


>gi|145301150|ref|YP_001143991.1| type I restriction-modification system M subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853922|gb|ABO92243.1| type I restriction-modification system M subunit [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 478

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 167/449 (37%), Gaps = 73/449 (16%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++   IW     L GD   +  +   +     L+         +    EK +  G  
Sbjct: 2   KQDNIIQKIWGLCNILRGDGITYYQYVSELSYLLFLK-------IAQENGSEKLIPKGYR 54

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            IDLES  +     FY                 +L +Y+   ++  +AI+    F +T+ 
Sbjct: 55  WIDLESHTEDGLLGFY------------QEMLTHLGAYVE--NEVVRAIYA---FPTTV- 96

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
               +  L  +    S IE H   V       +Y  LI +   +   GA  + TPR +V+
Sbjct: 97  -FSHSENLKAVINGISKIEWH--QVGKDGFGELYSGLIDKSAQDTRSGAGQYFTPRSLVN 153

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHG 244
               L+           P +   + DP  G+GGFL  A N++ +     K         G
Sbjct: 154 TILRLI----------QPNLGELIQDPATGSGGFLVSADNYIRNKYPREKYKANPPKCQG 203

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            E+E  T  +C+    +  L+         NI  G  L+ D+         ++NPPFG K
Sbjct: 204 VEIEKNTRRICLMNTFLHELD--------ANIIYGDALTDDVAELAEADVIIANPPFGNK 255

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
               +                  +P   ++  + FL H+   L+     GGRAA+VL  +
Sbjct: 256 AGGQRPLRND-------------IPFPNANKQLAFLQHIYLGLKP----GGRAAVVLPDN 298

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER---RG 420
            LF    G   +E+RR L+    +  I+ LPT +F+   + T +   +    +++     
Sbjct: 299 VLFEAGVG---TEVRRDLMNKCNLHTILRLPTGIFYAQGVKTNVLFFTKGSAKDKYQEES 355

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQR 449
             Q +   DL T++ + G KR    +   
Sbjct: 356 CTQNVWVYDLRTNMPSFG-KRTPFGNSDI 383


>gi|298292635|ref|YP_003694574.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya
           novella DSM 506]
 gi|296929146|gb|ADH89955.1| Site-specific DNA-methyltransferase (adenine-specific) [Starkeya
           novella DSM 506]
          Length = 482

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 155/459 (33%), Gaps = 62/459 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +A SL   +W  A  L         +   I     L+      +  R  +  +       
Sbjct: 2   NAQSLVAKVWNFAHVLRDQGVSYQAYISQISYLLFLKM-----DEERVTLIGEASMLPD- 55

Query: 66  NIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                             S +  +  L      +     + + S     I     F    
Sbjct: 56  -----------------GSRWDNIKGLSGEALNSAYVKLLGTLSKQG-GIIGAI-FLKAQ 96

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             ++    L ++             +P  V  +IYE L+ R   +V  GA  + TPR V+
Sbjct: 97  NEIQDPAKLKRLVGLIDSETWL--GLPVDVKGDIYEGLLARNAEDVKSGAGQYFTPRAVI 154

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI----PPIL 240
                ++           P   +T++DP CGT GFL  A  H+                 
Sbjct: 155 DAMVEVV----------DPEPQQTVHDPACGTAGFLLAAWEHMKKHPRAQDKATYLALKN 204

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G ++ PE   +    + +  +        +K+   G         GK +   L+NPP
Sbjct: 205 KFSGVDIVPEVVRLAAMNLYLHGITGVDSIVEAKDALLG-------AGGKSYDIILTNPP 257

Query: 301 FG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           FG  + +   +D  E +++  +  R    +   S+  + FL H+   L       G AA+
Sbjct: 258 FGRKQSYRIVRDDGEIDNEREDYDRQDFFVT-TSNKQLNFLQHIMTVLAPD----GEAAV 312

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           VL  + LF G A  GE+ IRR LL N     ++ LPT +F++  +   +      K    
Sbjct: 313 VLPDNVLFEGGA--GET-IRRRLLRNFDFHTLLRLPTGIFYKQGVKANVLFFDK-KPPSD 368

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
               + +   DL T+ R    K R +        +  Y 
Sbjct: 369 EAATRDLWIYDLRTNQR-FTLKERPMVRADLDDFVQCYR 406


>gi|295402726|ref|ZP_06812667.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975225|gb|EFG50862.1| Site-specific DNA-methyltransferase (adenine-specific) [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 485

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 96/549 (17%), Positives = 194/549 (35%), Gaps = 82/549 (14%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           +  SL N I    + L        +  + +V+     L+ L       +           
Sbjct: 2   TKESLENIIASCTDILRTDDGISGSVHYTEVLSWILFLKFLND-----KEKELALEAEVN 56

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF----SDNAKAIFEDFD 119
               D     +   +  +  S+            N+L  Y+AS       + + +     
Sbjct: 57  FEEYDY-LLEEKYRWDNWAISKDLTGDDLINFVNNDLIPYLASLKGEHEKDRREVISAI- 114

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F     R+    LL  +    + IE    +    +MS++YE L+++ G +    + +F T
Sbjct: 115 FKEVTNRVHSGYLLKDVLLKVNQIEF-NSSDDIFIMSHLYESLLQKMGDDGG-NSGEFYT 172

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238
           PR VV     ++           P + +T+YDP CGT GFL ++  H+    +  +    
Sbjct: 173 PRPVVRFMVEMI----------DPQVGKTVYDPACGTCGFLVESYEHMKKQANTPEKVKI 222

Query: 239 --ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293
                 +GQE  P  + + +  ML+  ++          I++ +TL+++   +   +++ 
Sbjct: 223 LAEKTFYGQEKTPLAYLLGLMNMLLHGIDY-------PQIRKTNTLNQNIREIDESQKYD 275

Query: 294 YCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           Y L+NPPF GK+ +  +     E +  E               +LFL ++   L+     
Sbjct: 276 YILANPPFGGKEQKIIQKNFPVEAQATE---------------LLFLQYIMKTLKFD--- 317

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411
            G+A ++L    LF          ++  LL+   +  IV+LP  +F   + + T +    
Sbjct: 318 -GKAGVILPEGVLFR--TNEAYKTVKEELLQKFNVHTIVSLPAGVFLPYSAVKTSIIFFD 374

Query: 412 NRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
              + +     Q  LI+   L         K   I+ +   +   ++  R N + S +  
Sbjct: 375 RTTSTKDIWFYQVPLIDGKKL--------TKSNGISKEHFEEARKLFKERPNTENSWL-- 424

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
                   + V   ++  + L        + +         +     ++L    + I   
Sbjct: 425 --------VPVEEVIKNEYNLSAAKYNPNKVEEEELLDPEEYAEEIYELLISATKSISSL 476

Query: 530 GWAESFVKE 538
             A     E
Sbjct: 477 MTAGDEANE 485


>gi|56418878|ref|YP_146196.1| type I restriction modification system M subunit [Geobacillus
           kaustophilus HTA426]
 gi|56378720|dbj|BAD74628.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Geobacillus kaustophilus
           HTA426]
          Length = 484

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 149/404 (36%), Gaps = 53/404 (13%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + K   GI+  P         ++YE+L+ +  +        F TPR ++H+   L+    
Sbjct: 123 LVKIVDGIDRIP-MKDRDTKGDLYEYLLSKIATAG--TNGQFRTPRHIIHMMVELM---- 175

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELE 248
                  P     + DP  G+ GFL  A  ++    S         +     + +G +++
Sbjct: 176 ------KPTPEDIIVDPAAGSAGFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMD 229

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                +    M++  +E       + NI+   +LS+      ++   L+NPPF  K   D
Sbjct: 230 RTMLRIGAMNMMLHGIE-------NPNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLD 280

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            DAV  +            + K     +LFL      L+     GGR A ++    LF  
Sbjct: 281 YDAVSNDLLK---------VVKTKKTELLFLALFLRILKT----GGRCACIVPDGVLF-- 325

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINA 427
            +     +IR+ ++EN  +EAI+++P+ +F     ++T + I +         +V   + 
Sbjct: 326 GSSKAHKDIRKEIVENHKLEAIISMPSGVFKPYAGVSTAIMIFTKT-GLGGTDQVWFYDM 384

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
                   +   KR  I ++    I+  + +RE  K  +  +   F    + V       
Sbjct: 385 KADGY---SLDDKRTPIEENDIPDIIARFHNREAEKERKRTEQSFF----VPVEEIREND 437

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           + L       +E +    +   +      ++   +++ +     
Sbjct: 438 YDLSINKYKEIEYEEVQYEAPSVIIKRIKELENDILKGLGELED 481


>gi|313500655|gb|ADR62021.1| HsdM [Pseudomonas putida BIRD-1]
          Length = 489

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/485 (19%), Positives = 168/485 (34%), Gaps = 63/485 (12%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +   E     + + Y +    
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-ELEWELMDDNYKSPIPD 59

Query: 66  NIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSST 123
           +    ++     G +     ++  + L       NL  Y  + S    +++FE       
Sbjct: 60  SCRWRTWAADPEGMTGDALKDFIDNNLFPQ--LQNLHEYSNTPSAFVVRSVFE-----DA 112

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++   LL ++                    N+YE L+R    + +  A +F TPR V
Sbjct: 113 YNYMKSGQLLRQVINKIQEGVDFNRAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPV 170

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240
                 ++           P +   + DP CGTGGFLT A+ H        +  +     
Sbjct: 171 TEFMVRMV----------DPKLAEKVMDPACGTGGFLTCAIEHKRSRYVKTAEDERTLQA 220

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLS 297
              G E +P  H +    M++  +E          I+  +TLSK        +R H  ++
Sbjct: 221 SIFGVEKKPLPHLLATTNMILHGIEV------PSQIRHDNTLSKPLISWGPSERVHCIVA 274

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG              ++G    F     +  + + LFL+ +   L+     GGRAA
Sbjct: 275 NPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLKD----GGRAA 318

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
           +VL    LF     S    I+  LL    +  IV LP  +F  + T I T L   +    
Sbjct: 319 VVLPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTP 374

Query: 416 EERRGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            ++      Q       ++  R    +   + +       D + +R    F+  +     
Sbjct: 375 TKQVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSEADGFAARAENAFAWQVSVEEL 434

Query: 474 GYRRI 478
             R  
Sbjct: 435 QARNW 439


>gi|300718521|ref|YP_003743324.1| type I restriction enzyme EcoEI M protein [Erwinia billingiae
           Eb661]
 gi|299064357|emb|CAX61477.1| Type I restriction enzyme EcoEI M protein [Erwinia billingiae
           Eb661]
          Length = 490

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 91/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +     T+    E         I      +    +    +   L    + +  
Sbjct: 33  LLFLKIFD-----TQEEELELEQDDYQLPIPERYLWRTWAANSEGITGDELLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+S IA    N +       FS     ++   LL ++    + I+    +    +  +
Sbjct: 88  PTLKSMIAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSSERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R    + +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILRDL--QNAGNAGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV +     +           G E +   H +C   ML+  +E         
Sbjct: 195 GFLACSFDHVKEHYVKTTEDHKTLQKQIFGVEKKQLPHLLCTTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQVDVFVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPDGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + S  +G  SR  + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGSEADGFASREENNQA---WKVSIDDIIARNFNLD 440


>gi|254976626|ref|ZP_05273098.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-66c26]
 gi|255094011|ref|ZP_05323489.1| type I restriction modification system M subunit [Clostridium
           difficile CIP 107932]
 gi|255315762|ref|ZP_05357345.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-76w55]
 gi|255518423|ref|ZP_05386099.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-97b34]
 gi|255651541|ref|ZP_05398443.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-37x79]
 gi|260684596|ref|YP_003215881.1| type i restriction enzyme m subunit [Clostridium difficile CD196]
 gi|260688254|ref|YP_003219388.1| type i restriction enzyme m subunit [Clostridium difficile R20291]
 gi|306521356|ref|ZP_07407703.1| type I restriction enzyme M protein [Clostridium difficile
           QCD-32g58]
 gi|260210759|emb|CBA65674.1| type i restriction enzyme m subunit [Clostridium difficile CD196]
 gi|260214271|emb|CBE06583.1| type i restriction enzyme m subunit [Clostridium difficile R20291]
          Length = 487

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/489 (16%), Positives = 165/489 (33%), Gaps = 73/489 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     T++      L      I  +    +    F N            N  
Sbjct: 35  LLFIKGLDEV--ETKNEAEATLLGVSFEKIFDDEHQHLRWSKFSNEGNSEKMYEIVQNEV 92

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +    ++A            I ++    +L KI    S +EL  D        +
Sbjct: 93  FPFIKKLHGNKESAY----AKYMGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  S         +     + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      +F   L+NPPF    + +  + +              + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G   IR+ +++N  +EAI
Sbjct: 296 TKKTELLFLALFLRVLK----IGGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +         KV   +         +   KR  I D   
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNEIKDSDI 405

Query: 450 RQILDIYV------SRENGKFSRMLDYRTFG----------YRRIKVLRPLRMSFILDKT 493
             I+  +        R+  + S  +D               Y+ +     +  +  +   
Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVVYDAPSVIIG 465

Query: 494 GLARLEADI 502
            +  LE +I
Sbjct: 466 RVKVLEKEI 474


>gi|291086066|ref|ZP_06354740.2| type I restriction-modification system, M subunit [Citrobacter
           youngae ATCC 29220]
 gi|291069286|gb|EFE07395.1| type I restriction-modification system, M subunit [Citrobacter
           youngae ATCC 29220]
          Length = 493

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 182/508 (35%), Gaps = 58/508 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E       S I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEALELEQDNYQSPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNNYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     + E            
Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQAETVSHDPDELLAQ 464

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKES 539
            +   + ++ +  Q+     A    KE+
Sbjct: 465 YAKQQEEIQTLRHQLRDILGAALSGKEA 492


>gi|110644784|ref|YP_672514.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536]
 gi|110346376|gb|ABG72613.1| type I restriction enzyme EcoEI M protein [Escherichia coli 536]
          Length = 501

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 45  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 206

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++   +    + +      K + +  ++ + 
Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYD--HPYPAGVKNYSKTKPMKFEEFQA 415

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 416 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 452


>gi|320644442|gb|EFX13507.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H- str. 493-89]
          Length = 489

 Score =  184 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLKFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440


>gi|146396|gb|AAA23984.1| restriction-modification enzyme type I M subunit [Escherichia coli]
          Length = 489

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     + E            
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 460

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538
            +     ++ +  Q+     A   VKE
Sbjct: 461 YAKQQAEIQTLRNQLRDILGAALSVKE 487


>gi|255102190|ref|ZP_05331167.1| type I restriction modification system M subunit [Clostridium
           difficile QCD-63q42]
          Length = 487

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 82/489 (16%), Positives = 165/489 (33%), Gaps = 73/489 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     T++      L      I  +    +    F N            N  
Sbjct: 35  LLFIKGLDEV--ETKNEAEATLLGVSFERIFNDEHQHLRWSKFSNEGNSEKMYEIVQNEV 92

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +    D+A            I ++    +L KI    S +EL  D        +
Sbjct: 93  FPFIKKLHGNKDSAY----AKYMGDAIFKIPTPLMLSKIVDGISNLELSKDR---DTKGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ +   L+           P     + DP  G+ 
Sbjct: 146 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVRLI----------KPTPEDIIVDPAAGSA 193

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  S         +     + +G +++     +    M++  ++     
Sbjct: 194 GFLVSSQQYLRDNHSSLFLVQGLKEHFNNGMFYGFDMDRTMLRIGAMNMMLHGVD----- 248

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+      +F   L+NPPF    + +  + +              + K
Sbjct: 249 --NPNIEYKDSLSEVNTDKDKFTLVLANPPFKGSLDYEAVSADL-----------LKVTK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G   IR+ +++N  +EAI
Sbjct: 296 TKKTELLFLALFLRVLK----IGGRCACIVPDGVLF--GSTGGHKSIRKEIVDNHKLEAI 349

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +         KV   +         +   KR  I D   
Sbjct: 350 ISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNEIKDSDI 405

Query: 450 RQILDIYV------SRENGKFSRMLDYRTFG----------YRRIKVLRPLRMSFILDKT 493
             I+  +        R+  + S  +D               Y+ +     +  +  +   
Sbjct: 406 EDIIKRFDNLDGEVDRKRTEQSFFVDVEEIRENGYDLSINKYKEVVYEEVVYDAPSVIMG 465

Query: 494 GLARLEADI 502
            +  LE +I
Sbjct: 466 RVKALEKEI 474


>gi|24115564|ref|NP_710074.1| putative restriction modification enzyme M subunit (methylase)
           [Shigella flexneri 2a str. 301]
 gi|24054895|gb|AAN45781.1| putative restriction modification enzyme M subunit (methylase)
           [Shigella flexneri 2a str. 301]
          Length = 501

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 45  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HQYPAGVKNYSKTKPMKFEEFQA 415

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 452


>gi|262165309|ref|ZP_06033046.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio mimicus VM223]
 gi|262025025|gb|EEY43693.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio mimicus VM223]
          Length = 496

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 172/461 (37%), Gaps = 58/461 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+      +     +  +   +    I+     +         +   L    + +  
Sbjct: 33  LLFLK----VFDAQEEELELELDDYKAP-INERYLWRNWAADAQGITGDKLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            NL++  A    N +       F      ++   LL ++    + I+   DT    +  +
Sbjct: 88  YNLKNMAAPVDTNPRGYVVKEAFRDAYNYMKNGTLLRQVINKLNEIDFT-DTQERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       L           P +   ++DP+CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVDRL----------DPKLGENVFDPSCGTG 194

Query: 218 GFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GFLT A+NH+ + G               HG E +   H +C+  +++  +E        
Sbjct: 195 GFLTCAINHIQEHGKPETSEQYATFQKQFHGVEKKQLPHLLCITNLMLHGIEV------P 248

Query: 274 KNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             I+  +TL+K         +   +NPPFG     ++D +EK        R      + +
Sbjct: 249 SQIKHDNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETA 299

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           D   LFL  +   L+      GRA +VL    LF        ++I++ L E   +  IV 
Sbjct: 300 D---LFLQLIIEVLDP---ANGRAGVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVR 350

Query: 393 LPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LP  +F  + T I T +   +  K  +    V        +        K + +  ++ +
Sbjct: 351 LPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPEGVKNYSKTKPMKFEEFQ 404

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
             +D + + E+G  SR+ +       ++ +   +  +F LD
Sbjct: 405 AEIDWWGNEEDGFASRVENNHA---WKVSIDEIIARNFNLD 442


>gi|15828553|ref|NP_325913.1| restriction-modification enzyme subunit M3 (fragment) [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089495|emb|CAC13255.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT) [Mycoplasma
           pulmonis]
          Length = 332

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 39/344 (11%)

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V L  A+L          +P    ++YDP CGTGG    A  ++            L  
Sbjct: 1   MVELMVAIL----------NPESDSSIYDPCCGTGGMFIQAKQYLQKNNL---PTDELKI 47

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           +GQE + +T  +    +++   + D   D    ++   T + DL   K+F   L+NPPF 
Sbjct: 48  YGQEFQNQTWKLARINLILNGFDPD---DTHLGLRSEDTFNDDLTGNKKFDIVLANPPFN 104

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K  +  D            RF  G+P   +G+  ++ H+  KL       GRAAIVL++
Sbjct: 105 VKKWQTNDISG-------DPRFAWGMPPEGNGNYAWISHIVYKLNRK----GRAAIVLAN 153

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
             + + +    E  IR+ +LE + IEAI++LP  LF+ T IA  +WI +N+K        
Sbjct: 154 GSVSSSQKN--ELAIRKKMLEENKIEAIISLPDKLFYTTGIAATIWIFNNQKE---NDDF 208

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
            LINA +L         K R +      +I+D+Y     GK     D      R + +  
Sbjct: 209 LLINAEELGELESK---KLRHLTKSNIEKIVDVYKQFREGKKINEKDLA----RSVSLDE 261

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                + L          +   ++            L  + +  
Sbjct: 262 IKENDYSLVPGRYIEYSNEDIDKEEIIKEILEIEAELNSLFKDF 305


>gi|166711014|ref|ZP_02242221.1| type I restriction-modification system, M subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 489

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 154/462 (33%), Gaps = 76/462 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLA-------FGGSNIDLESFVKVAGYSFYNTSEY-SLS 89
              L+ L+   E     + E Y +       +     D E        SF +   +  L 
Sbjct: 33  MLFLKILDDR-EQEWELIHENYRSPLPQRLRWRNWAADPEGITGDELKSFIDIDLFPDLR 91

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            L   +++         F    + +     F      ++   L+ ++             
Sbjct: 92  DLTPRHSKP------LGFV--VRDV-----FQDAYNYMKSGQLIRQVLNKIQSGVDFNKA 138

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE L+R   S  +  A +F TPR V      ++           P +   +
Sbjct: 139 QERHAFGDMYEQLLRDLQSAGN--AGEFYTPRPVTEFMVRMV----------DPKLHEKV 186

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT A+ H        +  +        G E +P  H +    M++  +E 
Sbjct: 187 MDPACGTGGFLTCAIEHKRQRYVRTAEDEAILQASIFGVEKKPLPHLLATTNMVLHGIEV 246

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    I+  +TL++       G+R    ++NPPFG              ++G    
Sbjct: 247 ------PSQIKHDNTLARPLISWGPGERVDCIVANPPFGGME-----------EDGIESN 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     +  + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL 
Sbjct: 290 FPAAF-RTRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLT 341

Query: 384 NDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
              +  +V LP  +F  + T I T L   +      R   V                 K 
Sbjct: 342 ECNLHTVVRLPNGVFNPY-TGIKTNLLFFTKG---TRTKDVWFYEHQYPAGYKSYSKTKP 397

Query: 442 RIINDDQRRQI-----LDIYVSRENGKFSRMLDYRTFGYRRI 478
             + +    +         + +R+  KF+  + +     R  
Sbjct: 398 MRVEEFAVEEAWWGSEATGFAARQENKFAWKVSFDELQRRNW 439


>gi|270292633|ref|ZP_06198844.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
 gi|270278612|gb|EFA24458.1| type I restriction-modification system, M subunit [Streptococcus
           sp. M143]
          Length = 497

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 83/509 (16%), Positives = 170/509 (33%), Gaps = 70/509 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+            ++L      I  +   +    +F N  +        T   
Sbjct: 35  LLFMKDLDSV--ELGRESDAEFLGISYEGIFPKDKPEYRWSTFKNIGDAQEVYRLMTQEI 92

Query: 98  NNLESYIAS------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF----SGIELHP 147
                 +        FS   +      +  +T+ ++        I   F    SGI+   
Sbjct: 93  FPFMKNLKGDTDDTAFSRYMREAIFQINKPATLQKV------ISILDEFPTRDSGIDFDS 146

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           DT     + +IYE+L+ +  +        F TPR ++ +   L+      +         
Sbjct: 147 DTQGINDIGDIYEYLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS------- 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGML 260
              DP  G+ GFL  A  ++                    + HG + +     +    M+
Sbjct: 198 ---DPAMGSAGFLVSASRYLKRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMM 254

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +E       +  I    +LS+D     ++   L+NPPF    + D  + +       
Sbjct: 255 LHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTSNDL------ 301

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K     +LFL      L+     GGRAA+++    LF   +      IR+ 
Sbjct: 302 -----LATVKTKKTELLFLALFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQE 350

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           ++EN  ++A++++P+ +F     ++T + I +         KV   +   +     +   
Sbjct: 351 IVENHKLDAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDD 406

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           KR+ I+D+    I+  +   EN    +  D   F    + V       + L       +E
Sbjct: 407 KRQPISDNDIPDIIQRFHQLENEAERKRTDQSFF----VPVDEIKDNDYDLSINKYKEIE 462

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            +    + + +      D+ K +   +  
Sbjct: 463 YEKVEYEPTEVILKKINDLEKEIQAGLAE 491


>gi|162453796|ref|YP_001616163.1| type I restriction-modification system M subunit [Sorangium
           cellulosum 'So ce 56']
 gi|161164378|emb|CAN95683.1| probable type I restriction-modification system,M subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 486

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 97/549 (17%), Positives = 178/549 (32%), Gaps = 74/549 (13%)

Query: 8   AASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECA-LEPTRSAVREKYLAFGGS 65
              +   +W     L      H D+ + I     L+      ++ +R   R        +
Sbjct: 1   MTDVVGKLWGFCHTLRHDGIDHGDYIEQITYLLFLKMASERGIDLSRVEHRTPRGEVDAT 60

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +    +    +G +  +     L +L                   A  +  +    S   
Sbjct: 61  DCSWPALRARSGQALLDRYADVLRSLDG-----------------APGVLGEIYAGSQ-P 102

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           R +    L K+      IE     V  +     YE L+ +  +E  +GA  + TPR ++ 
Sbjct: 103 RFKSPASLGKLVDLIDEIEWTRLGVDIQA--AAYEGLLEKAAAEGKKGAGQYFTPRALIQ 160

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------SHHKIPPI 239
                +                 L DP CGTGGFL  A   +             +    
Sbjct: 161 SIVRCIRPD------PQGKPGFALCDPACGTGGFLVAAWEWIEAEARGALDREAARRIKA 214

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               GQEL      + +  + +  +E          I  G +L  D    +RF   L+NP
Sbjct: 215 GAFFGQELVARPRRLALMNLYLHGIE--------PRITLGDSL--DAPPDERFDVILTNP 264

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG K   +              R        ++  + F+ H+   L      GGRAA+V
Sbjct: 265 PFGTKGAYE------------TPRREDFAIATANKQLNFIQHVLTILRP----GGRAAMV 308

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417
           L    LF  +A      +   L     +  ++ LP   F  +   +   +   +  +  E
Sbjct: 309 LPDHCLFADQA----GAVLEILARGCDLHTVLRLPHGTFTPYSAGVKANVVFFTKGRATE 364

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG-YR 476
              +V + +A    T + +  KK R ++     +    Y    +G+ +R     + G +R
Sbjct: 365 ---RVWIYDAR---TGVPSITKKGRPLSPAHFAEFERCYGGDPDGRGAREAASSSEGRFR 418

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
             ++       F LD     + E  +      P  +    D L+ + + +       + +
Sbjct: 419 SFELREVKEREFKLDGLRWLK-EESLDEAGEMPEPEELATDALQELTEAVAALNRVLALL 477

Query: 537 KESIKSNEA 545
           +   K+ EA
Sbjct: 478 EGGAKAAEA 486


>gi|331666164|ref|ZP_08367045.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli TA271]
 gi|331066375|gb|EGI38252.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli TA271]
          Length = 489

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     + E            
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 460

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538
            +     ++ +  Q+     A   VKE
Sbjct: 461 YAKQQAEIQTLRNQLRDILGAALSVKE 487


>gi|148549814|ref|YP_001269916.1| N-6 DNA methylase [Pseudomonas putida F1]
 gi|148513872|gb|ABQ80732.1| N-6 DNA methylase [Pseudomonas putida F1]
          Length = 489

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 165/491 (33%), Gaps = 75/491 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +      R    E       S
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDD-----REQEWELLDDDYRS 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDFDF 120
            I      +    +    +  +L      N    L++ +  +S        + +FE    
Sbjct: 56  PIPESCRWRTWAANPEGITGDALKDFIDNNLFPQLQN-LHEYSTTPATYVVRGVFE---- 110

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 ++   L+ ++                    ++YE L+R    + +  A +F TP
Sbjct: 111 -DAYNYMKSGQLIRQVINKIQEGVDFNKAQERHAFGDMYEQLLRDL--QNAGNAGEFYTP 167

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIP 237
           R V      ++           P +   + DP CGTGGFLT ++ H        +  +  
Sbjct: 168 RPVTEFMVRMV----------DPKLDEKVMDPACGTGGFLTCSIEHKRKRYVQTAEDERA 217

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294
                 G E +P  H +    M++  +E          I+  +TL +        +R   
Sbjct: 218 LQASIFGVEKKPLPHLLATTNMILHGIEV------PNQIKHDNTLGRPLISWGPAERVDC 271

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFG     ++D +E         R      + +D   LFL+ + + L+     GG
Sbjct: 272 IVANPPFGG---MEEDGIETNFPTAFRTR------ETAD---LFLVLIMHLLKD----GG 315

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
           RAA+VL    LF     S    I+  LL    +  IV LP  +F  + T I T L   + 
Sbjct: 316 RAAVVLPDGFLFGEGIKS---RIKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFTK 371

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI-----LDIYVSRENGKFSRM 467
               +    V                 K   + +    +      +D + +R   +F+  
Sbjct: 372 GTPTK---DVWFYEHQYPAGYKSYSKTKPMRVEEFAVEEAWWGSEVDGFAARRENEFAWK 428

Query: 468 LDYRTFGYRRI 478
           + +     R  
Sbjct: 429 VSFDELQNRNW 439


>gi|194443867|ref|YP_002043769.1| type I restriction-modification system M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194402530|gb|ACF62752.1| type I restriction-modification system, M subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 489

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 95/512 (18%), Positives = 180/512 (35%), Gaps = 66/512 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         +      +         +   L    + +  
Sbjct: 33  LLFLKIFDA-----QEQALEIEQEKYRLPMPERYLWRNWAADNEGITGDKLLAFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+   A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PTLKDLPAQIDINPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-RASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   +  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILRDLQAAGN--AGEFYTPRAVTRFMVERV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +  +H            HG E +   H +C   ML+  +E         
Sbjct: 195 GFLACAFDHVKNHYAHTVTDHQILQKQIHGVEKKQLPHLLCTTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK   +    R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQMDVIITNPPFGG---TEEDGIEKNFPSDMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIIEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR----RIINDD 447
           P  +F  + T I T L   +  +  +             +      G K     + +  +
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTKE---------IWFYEHPHPAGVKNYSKTKPMKFE 399

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
           + +  +D + +  +G  SR+ + +     ++ +   +  +F LD     + E        
Sbjct: 400 EFQAEIDWWGNEADGFASRVENEQA---WKVSIDEVIARNFNLDIKNPHQAETVSHDPDE 456

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
                +   + ++ +  Q+     A    KE+
Sbjct: 457 LLAQYAKQQEEIQTLRHQLRDILGAALSGKEA 488


>gi|333010422|gb|EGK29855.1| hypothetical protein SFVA6_0215 [Shigella flexneri VA-6]
          Length = 486

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440


>gi|257457514|ref|ZP_05622682.1| type I restriction-modification system [Treponema vincentii ATCC
           35580]
 gi|257445137|gb|EEV20212.1| type I restriction-modification system [Treponema vincentii ATCC
           35580]
          Length = 480

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/438 (17%), Positives = 144/438 (32%), Gaps = 84/438 (19%)

Query: 1   MTEFTGS----AASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRS 53
           M +   +      +L   +W  A+ L           F   I+  T L  L         
Sbjct: 1   MAKKQATPAKPEQALTKKVWNMADVL-----AAAGIGFTDYIIQLTYLLFL--------- 46

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
                          ++   +  G             +   +  + L  Y     +    
Sbjct: 47  --------------KMDFEKESYGLGSALPDGSKWKDIVQLDGPDQLVKY-----EKILE 87

Query: 114 IFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           + +  D      F+    ++ K  LL K+            ++   +   IYE ++ + G
Sbjct: 88  VLQATDGLIGAIFTEAQNKIAKPALLKKLIGMIDEENWF--SMDGDLKGAIYESILEKNG 145

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +   GA  + TPR +++    ++           P +  T+ DP CGTGGFL  A +++
Sbjct: 146 QDKKSGAGQYFTPRPLINAMVDVV----------QPKITETVADPACGTGGFLLAAYDYM 195

Query: 228 ADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     +        G ++ P    +    + +  + +D        I+   +L  
Sbjct: 196 RKQSDEQSKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGADTTP-----IKCEDSLEH 250

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +          L+NPPFG +     D                 +   S+  + FL H+  
Sbjct: 251 E--PEHLVDVLLANPPFGARPAGSVDISTMRSDL---------IVTTSNNQLNFLQHIMV 299

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+     GGRA IVL  + LF   AG     +R+ LL++  +  I+ LPT +F+   + 
Sbjct: 300 MLKD----GGRAGIVLPDNVLFADGAGEI---LRKKLLKDFNLHTILRLPTGIFYANGVK 352

Query: 405 TYLWILSNRKTEERRGKV 422
             +      K  +     
Sbjct: 353 ANVLFFEKGKPTQETWYY 370


>gi|26251230|ref|NP_757270.1| putative restriction modification enzyme M subunit [Escherichia
           coli CFT073]
 gi|26111663|gb|AAN83844.1|AE016772_22 Putative restriction modification enzyme M subunit [Escherichia
           coli CFT073]
          Length = 507

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 51  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 105

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 106 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 164

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 165 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 212

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 213 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 266

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 267 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 317

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 318 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 367

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 368 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 421

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     + E            
Sbjct: 422 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 478

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538
            +     ++ +  Q+     A   VKE
Sbjct: 479 YAKQQAEIQTLRNQLRDILGAALSVKE 505


>gi|322615695|gb|EFY12615.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618756|gb|EFY15645.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322621830|gb|EFY18680.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627555|gb|EFY24346.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630862|gb|EFY27626.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322637920|gb|EFY34621.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322643846|gb|EFY40394.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651075|gb|EFY47460.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656669|gb|EFY52957.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659906|gb|EFY56149.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322661885|gb|EFY58101.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666369|gb|EFY62547.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672788|gb|EFY68899.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676217|gb|EFY72288.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680702|gb|EFY76740.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684404|gb|EFY80408.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323194258|gb|EFZ79455.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323197405|gb|EFZ82545.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201478|gb|EFZ86542.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205992|gb|EFZ90954.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213004|gb|EFZ97806.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323215377|gb|EGA00121.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323223293|gb|EGA07630.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226180|gb|EGA10397.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228833|gb|EGA12962.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236556|gb|EGA20632.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239944|gb|EGA23991.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242009|gb|EGA26038.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247843|gb|EGA31780.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251517|gb|EGA35388.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323258116|gb|EGA41793.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263741|gb|EGA47262.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265665|gb|EGA49161.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323270110|gb|EGA53558.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 489

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 166/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRTWAANAEGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGFVVRQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNNYVQSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +    +        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---DIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +   SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADSFASRVENEQA---WKVSIDEVIARNFNLD 440


>gi|313646314|gb|EFS10776.1| RNA methylase family UPF0020 family protein [Shigella flexneri 2a
           str. 2457T]
 gi|332749087|gb|EGJ79510.1| hypothetical protein SFK671_5131 [Shigella flexneri K-671]
 gi|332749700|gb|EGJ80116.1| hypothetical protein SF274771_5150 [Shigella flexneri 2747-71]
 gi|333009052|gb|EGK28508.1| hypothetical protein SFK218_0156 [Shigella flexneri K-218]
 gi|333022253|gb|EGK41491.1| hypothetical protein SFK304_0030 [Shigella flexneri K-304]
          Length = 489

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440


>gi|108563889|ref|YP_628205.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837662|gb|ABF85531.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 670

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 164/397 (41%), Gaps = 46/397 (11%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F SE  +    F TP +V        L        E+    +++YDPTCG+G  L  
Sbjct: 1   MRHFASESGKSKGQFYTPSEVSL------LLSLLLGIDENTRQDKSIYDPTCGSGSLLLK 54

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--S 280
           A +              L  +GQE +  T A+C   M++             +I +G  S
Sbjct: 55  ASSLA--------GKNGLTIYGQEKDISTTALCKMNMILHN-------SADADIAKGGSS 99

Query: 281 TLSKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPKIS 332
           TLS  LFT +      F Y ++NPPF  K   D  +++ + K   N    RF  G P   
Sbjct: 100 TLSNPLFTTENGMLKTFDYVVANPPFSLKNWTDGLSIDPKSKQVINDHFNRFEDGTPPEK 159

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +G   FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    I+ ++ 
Sbjct: 160 NGDFAFLLHIIKSLKNT----GKGAVILPHGVLFRGNA---EGVIRKNLLTKGYIKGVIG 212

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           L  +LF+ T+I   + +L  +    R+G V +I+A+  +   + +G K R + +   +++
Sbjct: 213 LAPNLFYGTSIPACVIVLDKKNARARKG-VFVIDASKDF---KKDGNKNR-LREQDVQKM 267

Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLEADITWRKLSP 509
           +D + + +    +S+M+           +  P  ++   +      A + +     K   
Sbjct: 268 IDTFNALKEIPYYSKMVSLEEISANDYNLNIPRYIAAKQESEKDLFALINSPSYLPKNEI 327

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
              + +  + K +   ++     E +     +    K
Sbjct: 328 NLYAPYFRVFKELKNTLFKKSDKEGYYALKTECENIK 364


>gi|302880109|ref|YP_003848673.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302582898|gb|ADL56909.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 82/491 (16%), Positives = 158/491 (32%), Gaps = 87/491 (17%)

Query: 10  SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61
           S+++ I    + +  D          +      L     L+  +   E     +++ Y +
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWELLQDNYQS 55

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119
                    ++         N    +   L          +   + +   + +A      
Sbjct: 56  PLPEAYRWRNWAA-------NPEGMTGEALKQFLDNEMFPALQQLEARGGDQRAYVIRSV 108

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   L+ ++                 +  ++YE L+R   +  +  A +F T
Sbjct: 109 FEGAYNYMKSGQLIRQVVNKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKI 236
           PR V      +           +P +   + DP CGTGGFL+ ++ H+          + 
Sbjct: 167 PRAVTEFMVRM----------TNPRLGEKVMDPACGTGGFLSCSIEHIRRQDVKTVDDEA 216

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293
                  G E +P  H +C   M++  ++         NI+  +TL++        +R  
Sbjct: 217 ALQASIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWTPKERVD 270

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG              ++G    F     +  + + LFL+ +   L+     G
Sbjct: 271 VVVTNPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLK----AG 314

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
           GRAA+VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   S 
Sbjct: 315 GRAALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSK 371

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQI----------LDIYVSREN 461
               +             +      G K        +  +            D +  R  
Sbjct: 372 GAPTQHI---------WFYEHPYPAGVKSYNKTKPMKIEEFDVEAAWWGVESDGFAHRVE 422

Query: 462 GKFSRMLDYRT 472
            + +  +    
Sbjct: 423 NEQAWKVSLDD 433


>gi|332083324|gb|EGI88555.1| hypothetical protein SB521682_5204 [Shigella boydii 5216-82]
 gi|332083825|gb|EGI89043.1| hypothetical protein SD15574_5337 [Shigella dysenteriae 155-74]
          Length = 489

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440


>gi|218692732|ref|YP_002400944.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli ED1a]
 gi|218430296|emb|CAV18172.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli ED1a]
          Length = 501

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 45  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 452


>gi|323481373|gb|ADX80812.1| Type I restriction-modification system methylation subunit
           [Enterococcus faecalis 62]
          Length = 343

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 49/340 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY------ 59
            L   ++  A++L      +++   +L     + L   L            E+Y      
Sbjct: 4   ELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLTDESLEEYDTVSKQ 63

Query: 60  -----LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNA 111
                          +    +     Y  S   L  + +   +     L     +F   A
Sbjct: 64  TMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQLA 123

Query: 112 ------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                   +F+D D  S        ++   + ++ K  + +E+        V+ + YE L
Sbjct: 124 STYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEFL 181

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +F SE  + A +F TP  V  +   ++         +      +++DPT G+G  + +
Sbjct: 182 ISQFASEAGKKAGEFYTPHMVSDMMAQIVT------LDQKERRFFSVFDPTMGSGSLMLN 235

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             N++         P  +  HGQEL   T+ +    +++  ++++       N++ G TL
Sbjct: 236 VRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM-----NLRNGDTL 283

Query: 283 SKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +KD  T + + +   + NPP+   W  D   ++    N  
Sbjct: 284 NKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSRFNRY 323


>gi|164687376|ref|ZP_02211404.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM
           16795]
 gi|164603800|gb|EDQ97265.1| hypothetical protein CLOBAR_01017 [Clostridium bartlettii DSM
           16795]
          Length = 486

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/489 (15%), Positives = 174/489 (35%), Gaps = 74/489 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     T+      +L      I  +    +    F N     +  + +    
Sbjct: 35  LLFIKGLDD--NETQKESDAIFLGIPFEGIFPQDKQHLRWNKFKNEEPTVMYDIMANEVF 92

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +    ++A            I ++  A +L KI      +E+      D    +
Sbjct: 93  P-FIKNLHGDGESAY----SKYMGDAIFKIPTALMLAKIIDGIDKLEIDNK---DDNKGD 144

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ +  +L+           P    T+ DP  G+ 
Sbjct: 145 LYEYLLSKVATAG--TNGQFRTPRHIIDMIVSLM----------KPTPQDTIVDPAAGSA 192

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  +  ++ D  +         +     + +G +++     +    M++  ++     
Sbjct: 193 GFLVSSQQYLRDNHADLFLVQSLKEHFNNDMFYGFDMDRTMLRIGAMNMMLHGVD----- 247

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF    + +    +              + K
Sbjct: 248 --NPNIEYKDSLSEVNTDSEKYSLVLANPPFKGSLDYEAVGADL-----------LKVTK 294

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IR+ ++EN+ +EAI
Sbjct: 295 TKKTELLFLALFLRILKK----GGRCASIVPDGVLF--GSTKGHKDIRKEIVENNKLEAI 348

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +         KV   +         +   KR  + ++  
Sbjct: 349 ISMPSGVFKPYAGVSTAIIIFTKT-GNGGTDKVWFYDMKADGY---SLDDKRNPVEENDI 404

Query: 450 RQILDIYV------SRENGKFSRMLDYRTF----------GYRRIKVLRPLRMSFILDKT 493
             I++ +        R+  + S  +D               Y+ I+    +  +  +   
Sbjct: 405 PDIIERFDNLDKEVDRKRTEQSFFVDKSEIVENGYDLSINKYKEIEYEEVVYDAPEVILG 464

Query: 494 GLARLEADI 502
            +  LE +I
Sbjct: 465 RVKELEDEI 473


>gi|222036089|emb|CAP78834.1| restriction modification enzyme Msubunit [Escherichia coli LF82]
 gi|312948975|gb|ADR29802.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli O83:H1 str. NRG 857C]
          Length = 489

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 440


>gi|332749354|gb|EGJ79775.1| hypothetical protein SF434370_4721 [Shigella flexneri 4343-70]
 gi|332768711|gb|EGJ98890.1| hypothetical protein SF293071_0006 [Shigella flexneri 2930-71]
          Length = 476

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 20  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 74

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 75  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 133

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 134 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 181

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 182 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 235

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 236 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 286

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 287 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 336

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 337 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 390

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 391 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 427


>gi|219851547|ref|YP_002465979.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
 gi|219545806|gb|ACL16256.1| N-6 DNA methylase [Methanosphaerula palustris E1-9c]
          Length = 478

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 151/462 (32%), Gaps = 87/462 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64
            + +   +W     L       D+G  I        ++  +            +      
Sbjct: 1   MSDIVQKLWGFCHTLR--HDGIDYGDYIEQITYLLFIKMAD------------ERSVALP 46

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              D ++ V  +G    +     L TLG+ +                  +  D  F+  +
Sbjct: 47  EGCDWKALVSRSGTDLTDHYVDLLRTLGTEH-----------------GLLGDI-FAGAL 88

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           ++      L ++       E     +   V    +E L+ +  SE  +GA  + TPR V+
Sbjct: 89  SQFTNPVNLKRLIGLIDETEWTELNID--VKGEAFEGLLEKAASEGKKGAGQYFTPRIVI 146

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIP 237
                 +                T+ DP CGTGGFL  +   + +               
Sbjct: 147 QSIVRCMKP------DPRKRSDLTICDPACGTGGFLVCSFEWLLEQTKGGALDREVALRV 200

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQEL      + +  + +  +E         +I+ G ++ ++   G+RF   L+
Sbjct: 201 KKGTYFGQELVARPRRLALMNLFLHNVE--------PSIKFGDSIYENP-DGRRFDVVLT 251

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K        E                  S+  + F+ H+   L+     GGRAA
Sbjct: 252 NPPFGTKGANQAPDRED------------FTISTSNKQLNFVQHVMTILKP----GGRAA 295

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
           +V+  + LF   A     E+ + L+E+  +  I+ LP   F  +     T +   +    
Sbjct: 296 VVVPDNVLFADAA----GEVFKVLMEDCNLHTILRLPNGTFTPYSPGTKTNVLFFTKGFP 351

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            E       +   D  T++    KK R +      +    Y 
Sbjct: 352 TET------LWVYDDRTNVPGITKKDRPLTPAYFEEFERAYG 387


>gi|227885168|ref|ZP_04002973.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300980748|ref|ZP_07175163.1| N-6 DNA Methylase [Escherichia coli MS 45-1]
 gi|301048309|ref|ZP_07195340.1| N-6 DNA Methylase [Escherichia coli MS 185-1]
 gi|227837997|gb|EEJ48463.1| site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli 83972]
 gi|300299817|gb|EFJ56202.1| N-6 DNA Methylase [Escherichia coli MS 185-1]
 gi|300409163|gb|EFJ92701.1| N-6 DNA Methylase [Escherichia coli MS 45-1]
 gi|307556580|gb|ADN49355.1| type I restriction-modification system, M subunit [Escherichia coli
           ABU 83972]
 gi|315293300|gb|EFU52652.1| N-6 DNA Methylase [Escherichia coli MS 153-1]
          Length = 501

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 95/507 (18%), Positives = 180/507 (35%), Gaps = 58/507 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 45  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+ + +     ++ +   +  +F LD     + E            
Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLDIKNPHQAETVSHDPDELLAQ 472

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKE 538
            +     ++ +  Q+     A   VKE
Sbjct: 473 YAKQQAEIQTLRNQLRDILGAALSVKE 499


>gi|293408035|ref|ZP_06651875.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354]
 gi|291472286|gb|EFF14768.1| type I restriction enzyme EcoEI M protein [Escherichia coli B354]
          Length = 493

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 444


>gi|168749491|ref|ZP_02774513.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|195937622|ref|ZP_03083004.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|261226706|ref|ZP_05940987.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256909|ref|ZP_05949442.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. FRIK966]
 gi|188016186|gb|EDU54308.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|320190534|gb|EFW65184.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. EC1212]
 gi|320638730|gb|EFX08388.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320649760|gb|EFX18284.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320654810|gb|EFX22779.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660662|gb|EFX28123.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|326346809|gb|EGD70543.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. 1044]
          Length = 489

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440


>gi|297192313|ref|ZP_06909711.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719705|gb|EDY63613.1| N-6 DNA methylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 519

 Score =  183 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 97/536 (18%), Positives = 171/536 (31%), Gaps = 68/536 (12%)

Query: 15  IWKNAEDLWGD-FKHTDFGKVILPFTLLRRLEC-------ALEPTRSAVREKYLAFGGSN 66
           +W     L  D    +++ + +     L+  +                +      + G  
Sbjct: 4   LWNYCNVLRDDGVSASNYLEQLSLLVFLKMADETEQLNAHRPSADHEHMLPTAPEWQGRG 63

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
                 + + G          L  LG   T  N  + ++              F+     
Sbjct: 64  WPE--LIDLEGDPLEEAYSKLLIDLG-RRTDQNDHTTLSLI------------FNRARNH 108

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +E    L ++  +    E   ++  D      YE LI R  S+   GA  + TPR ++  
Sbjct: 109 IENPTHLRRLIVDLIDKEKWRNSRSDIN-GAAYEALIARSASDTKAGAGQYFTPRALIES 167

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----- 241
               +           P    T+ DP CGTGGFL  A  ++            L      
Sbjct: 168 IVRCM----------RPTPYDTITDPACGTGGFLIAAYEYITREYGDDLPDEDLHRLRTE 217

Query: 242 -PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G E+ P T  +     L+  L           I  G  L+K     +     L+NPP
Sbjct: 218 SIWGHEIVPATARLAAMNCLLHSLGD---PTGEPIIDVGDALAKP--PERHASLVLANPP 272

Query: 301 FGKKWE-----KDKDAVEKEHKNGELGR--FGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           FG+K       K+ +A   +  N    R  F  G    ++  + FL H+  +L       
Sbjct: 273 FGRKSGINVSGKEAEAEADDRDNVTYNRPDFWVGEQTTTNKQLNFLQHIGTQLTDK---- 328

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN- 412
           GRAA+++    L+ G AGS    +RR LL    +  ++ LP ++F+   +  ++      
Sbjct: 329 GRAAVIVPDGVLYEGGAGSVGDLVRRELLTGYNLHTMLRLPENIFYAGGVKAHVLFFEAV 388

Query: 413 --RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS--------RENG 462
              + ++       +   DL T  R    K+  +  +                   R+  
Sbjct: 389 PGHRADDDPPHTTYVWTYDLRTDSR-FTLKKNPMKPEHLADFEKQAFDPSDPDRKHRKES 447

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
              R         ++   L   R+S             D   R ++   +S   +I
Sbjct: 448 DRFRRHAAAELLAQKQVNLDIARLSPEASAAKEPTASIDALTRYVAGDLRSALSEI 503


>gi|302877623|ref|YP_003846187.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
 gi|302580412|gb|ADL54423.1| Site-specific DNA-methyltransferase (adenine-specific) [Gallionella
           capsiferriformans ES-2]
          Length = 491

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 83/491 (16%), Positives = 159/491 (32%), Gaps = 87/491 (17%)

Query: 10  SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLECALEPTRSAVREKYLA 61
           S+++ I    + +  D          +      L     L+  +   E     +++ YL+
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDR-ESEWELLQDNYLS 55

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFD 119
                    ++         N    +   L          +   + +   + +A      
Sbjct: 56  PLPEAYRWRNWAA-------NPEGMTGEALKQFLDNEMFPALQQLEARGGDQRAYVIRSV 108

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   L+ ++                 +  ++YE L+R   +  +  A +F T
Sbjct: 109 FEGAYNYMKSGQLIRQVVNKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--AGEFYT 166

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKI 236
           PR V      +           +P +   + DP CGTGGFL+ ++ H+          + 
Sbjct: 167 PRAVTEFMVRM----------TNPRLGEKVMDPACGTGGFLSCSIEHIRRQDVKTVDDEA 216

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFH 293
                  G E +P  H +C   M++  ++         NI+  +TL++        +R  
Sbjct: 217 ALQASIFGIEKKPMPHLLCTTNMILHGIDV------PSNIRHDNTLARPLISWTPKERVD 270

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             ++NPPFG              ++G    F     +  + + LFL+ +   L+     G
Sbjct: 271 VVVTNPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMQLLK----AG 314

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
           GRAA+VL    LF       ++ I+  LLE   +  IV LP  +F   T I T L   S 
Sbjct: 315 GRAALVLPDGFLF---GEGIKTRIKEKLLEECNLHTIVRLPNGVFAPYTGIKTNLLFFSK 371

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQI----------LDIYVSREN 461
               +             +      G K        +  +            D +  R  
Sbjct: 372 GAPTQHI---------WFYEHPYPAGVKSYNKTKPMKIEEFDVEAAWWGVESDGFSHRVE 422

Query: 462 GKFSRMLDYRT 472
            + +  +    
Sbjct: 423 NEQAWKVSLDD 433


>gi|194435169|ref|ZP_03067401.1| type I restriction-modification system, M subunit [Shigella
           dysenteriae 1012]
 gi|194416587|gb|EDX32724.1| type I restriction-modification system, M subunit [Shigella
           dysenteriae 1012]
 gi|320179361|gb|EFW54319.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella boydii ATCC 9905]
          Length = 493

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444


>gi|330879393|gb|EGH13542.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 489

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 92/494 (18%), Positives = 167/494 (33%), Gaps = 81/494 (16%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +   E     + + Y +    
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDDR-ELEWELMDDSYRSPIPD 59

Query: 66  NIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSST 123
           +    ++     G +     ++  + L       NL  Y  + S    +++     F   
Sbjct: 60  SCRWRTWAADPEGMTGEALKDFIDNNLFPQ--LQNLHEYSNTPSAYVVRSV-----FKDA 112

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++   LL ++                    N+YE L+R    + +  A +F TPR V
Sbjct: 113 YNYMKSGQLLRQVINKVQEGVDFNKAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPV 170

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240
                 ++           P +   + DP CGTGGFLT A+ H        +  +     
Sbjct: 171 TEFMVRMV----------DPKLDEKVMDPACGTGGFLTCAIEHKRSRYVKTAEDERTLQA 220

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLS 297
              G E +P  H +    M++  +E          I+  +TLSK        +R H  ++
Sbjct: 221 SIFGVEKKPLPHLLATTNMILHGIEV------PSQIKHDNTLSKPLISWGPSERVHCIVA 274

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG              ++G    F     +  + + LFL+ + + L+     GGRAA
Sbjct: 275 NPPFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMHLLKD----GGRAA 318

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
           +VL    LF     S    I+  LL    +  IV LP  +F  + T I T L   +    
Sbjct: 319 VVLPDGFLFGDGIKS---RIKEKLLTECNLHTIVRLPKGVFNPY-TGIKTNLLFFTKGTP 374

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQIL----------DIYVSRENGKF 464
            ++            +      G K        +  +            D + +R   +F
Sbjct: 375 TKQ---------VWFYEHQYPAGVKNYSKTRPMRIEEFAVEEVWWGSEDDGFAARVENEF 425

Query: 465 SRMLDYRTFGYRRI 478
           +  +       R  
Sbjct: 426 AWKVGVGELQARNW 439


>gi|218698187|ref|YP_002405854.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli 55989]
 gi|218703040|ref|YP_002410669.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli IAI39]
 gi|300815958|ref|ZP_07096181.1| N-6 DNA Methylase [Escherichia coli MS 107-1]
 gi|218354919|emb|CAV02127.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli 55989]
 gi|218373026|emb|CAR20915.1| Type I restriction enzyme EcoEI M protein (M.EcoEI) [Escherichia
           coli IAI39]
 gi|281603674|gb|ADA76658.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 2002017]
 gi|300531165|gb|EFK52227.1| N-6 DNA Methylase [Escherichia coli MS 107-1]
 gi|324005095|gb|EGB74314.1| N-6 DNA Methylase [Escherichia coli MS 57-2]
          Length = 501

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 45  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 206

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 416 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 452


>gi|197121942|ref|YP_002133893.1| N-6 DNA methylase [Anaeromyxobacter sp. K]
 gi|196171791|gb|ACG72764.1| N-6 DNA methylase [Anaeromyxobacter sp. K]
          Length = 486

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 162/470 (34%), Gaps = 77/470 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ L+  LE  R+ V E         +D     K   +S +   +     +      
Sbjct: 32  LLFLKYLDE-LEQERATVAELEGKRYSYILD-----KPYRWSEWAAPKDRDGKIDHNKAK 85

Query: 96  TRNNLES--------YIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSG 142
           T ++L          Y+  F   A     +       F     ++     L +I      
Sbjct: 86  TGDDLRDFVNLKLFPYLHGFKQKASGPNTVEYKIGEIFGEIRNKIGSGYNLREIIDQIDE 145

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +           +S +YE  I+R G        ++ TPR ++     ++          +
Sbjct: 146 LRFR-SQTEKHELSMLYEEKIKRMG-NAGRNGGEYYTPRPLIRAMVQVV----------A 193

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAG 258
           P +   +YDP CG+ GFL +A +++           K        G+E +   + + +  
Sbjct: 194 PKVGERIYDPACGSAGFLCEAFDYLKGKPGLTTKDLKTLQEKTFFGKEKKSLAYVIGIMN 253

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +E       + NI   +TL++   D+    R    L+NPPFG K  K+       
Sbjct: 254 MILHGIE-------APNILHTNTLAENLADIQEKDRVDVILANPPFGGKERKEVQQNFAI 306

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         +  + + LFL H    L+     GGRA IV+ ++ L      S   
Sbjct: 307 --------------RSGETAFLFLQHFIKMLK----AGGRAGIVIKNTFLSGNDNAS--V 346

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LLE   +  ++  P   F    + T +          +    QL        + R
Sbjct: 347 GLRKLLLETCNLHTVLDCPAGTFQGAGVKTVVLFFEKGAPTRKIWFYQL-------DAGR 399

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR--TFGYRRIKVLRP 483
           N G K   +NDD     L +  ++     S +LD +        + V  P
Sbjct: 400 NLG-KTNPLNDDDLVDFLRLEKTKAESAKSWVLDTKTLDKSTFDLTVRNP 448


>gi|110808125|ref|YP_691645.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 5 str. 8401]
 gi|110617673|gb|ABF06340.1| putative restriction modification enzyme M subunit [Shigella
           flexneri 5 str. 8401]
          Length = 496

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 40  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 94

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 95  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 153

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 154 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 201

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 202 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 255

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 256 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 306

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 307 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 356

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 357 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 410

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 411 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 447


>gi|191170740|ref|ZP_03032292.1| type I restriction-modification system, M subunit [Escherichia coli
           F11]
 gi|190908964|gb|EDV68551.1| type I restriction-modification system, M subunit [Escherichia coli
           F11]
          Length = 493

 Score =  183 bits (465), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444


>gi|328542330|ref|YP_004302439.1| Type I restriction modification system M subunit (Site-specific
           DNA-methyltransferase subunit) [polymorphum gilvum
           SL003B-26A1]
 gi|326412077|gb|ADZ69140.1| Type I restriction modification system M subunit (Site-specific
           DNA-methyltransferase subunit) [Polymorphum gilvum
           SL003B-26A1]
          Length = 512

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 72/463 (15%), Positives = 157/463 (33%), Gaps = 79/463 (17%)

Query: 9   ASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECA--LEPTRSAVR---- 56
           + + + IW        A  L    +   +         ++RL+    +E  +S       
Sbjct: 8   SQIDS-IWNDFWAGGVANPL-SVMEQMTY------LLFIKRLDDLHTVEERKSQTLKIPM 59

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           E+ +   G +     +  +    F N     +  +   +    L + +     +   +  
Sbjct: 60  ERRIFPEGRDDKGRPYDDLRWSRFKNFEPREMMDVVDEHVFPFLRA-LNGSQSSYGKLMR 118

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           D              LL K+ +    I +           ++YE+++ +     +     
Sbjct: 119 DARLG-----FSNPALLAKVVEKLDRIPME----DRDTKGDVYEYMLAKIA--SAGQNGQ 167

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--- 233
           F TPR ++ L   +           +P     + DP  GT GFL  A  ++ +       
Sbjct: 168 FRTPRHIIRLMVEM----------TAPKPTDAICDPAAGTCGFLVAAGEYLREKHPELMR 217

Query: 234 ----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                K     + HG + +     +    M +  +E       + N+    +L++D    
Sbjct: 218 DPALRKHFHEGLFHGFDFDTTMLRIGAMNMTLHGVE-------NPNVTYRDSLAEDHAED 270

Query: 290 K-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              +   L+NPPF    + +  A + +            + K     +LF+      L+ 
Sbjct: 271 AGAYSLVLANPPFAGSLDYEATAKDLQ-----------KIVKTRKTELLFIALFLRLLKT 319

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GGRAA+++    LF   +     +IRR L+E+  ++A++ LP+ +F     ++T +
Sbjct: 320 ----GGRAAVIVPDGVLF--GSSGAHKDIRRMLVEDHKLDAVIKLPSGVFRPYAGVSTAI 373

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            + +          V   +         +   KR  +   +++
Sbjct: 374 LLFTKT-GVGGTENVWFYDVAADGL---SLDDKRAELLPPEKQ 412


>gi|297528756|ref|YP_003670031.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
 gi|297252008|gb|ADI25454.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
          Length = 484

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 138/364 (37%), Gaps = 53/364 (14%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + K   GI+  P         ++YE+L+ +  +        F TPR ++H+   L+    
Sbjct: 123 LVKIVDGIDRIP-MKDRDTKGDLYEYLLSKIATAG--TNGQFRTPRHIIHMMVELM---- 175

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELE 248
                  P     + DP  G+ GFL  A  ++    S         +     + +G +++
Sbjct: 176 ------KPTPEDIIVDPAAGSAGFLVAAGEYLRKHRSDLFLVQSLKEHFNNHMFYGFDMD 229

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                +    M++  +E       + NI+   +LS+      ++   L+NPPF  K   D
Sbjct: 230 RTMLRIGAMNMMLHGIE-------NPNIEYRDSLSEQNKDKDKYTLVLANPPF--KGSLD 280

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
            DAV  +            + K     +LFL      L+     GGR A ++    LF  
Sbjct: 281 YDAVSNDLLK---------VVKTKKTELLFLALFLRILKT----GGRCACIVPDGVLF-- 325

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINA 427
            +     +IR+ ++EN  +EAI+++P+ +F     ++T + I +          V   + 
Sbjct: 326 GSSKAHKDIRKEIVENHKLEAIISMPSGVFKPYAGVSTAIMIFTKT-GVGGTDHVWFYDM 384

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
                   +   KR  I ++    I++ + +RE  K  +  +   F    + V       
Sbjct: 385 KADGY---SLDDKRTPIEENDIPDIIERFHNREAEKERKRTEQSFF----VPVEEIREND 437

Query: 488 FILD 491
           + L 
Sbjct: 438 YDLS 441


>gi|15804921|ref|NP_290963.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 EDL933]
 gi|15834561|ref|NP_313334.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|187775912|ref|ZP_02798948.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|189010373|ref|ZP_02806644.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189402076|ref|ZP_02779925.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189402859|ref|ZP_02791636.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189403850|ref|ZP_02785602.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189404614|ref|ZP_02809998.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189405571|ref|ZP_02822927.2| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208808458|ref|ZP_03250795.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208811917|ref|ZP_03253246.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821806|ref|ZP_03262126.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398363|ref|YP_002273871.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217324963|ref|ZP_03441047.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254796346|ref|YP_003081183.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. TW14359]
 gi|291285728|ref|YP_003502546.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|12519367|gb|AAG59530.1|AE005666_2 putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. EDL933]
 gi|13364785|dbj|BAB38730.1| type I restriction modification enzyme M subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|187770320|gb|EDU34164.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|189000682|gb|EDU69668.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357931|gb|EDU76350.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364319|gb|EDU82738.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368976|gb|EDU87392.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189374878|gb|EDU93294.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189379424|gb|EDU97840.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208728259|gb|EDZ77860.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733194|gb|EDZ81881.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741929|gb|EDZ89611.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159763|gb|ACI37196.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217321184|gb|EEC29608.1| type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254595746|gb|ACT75107.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli O157:H7 str. TW14359]
 gi|290765601|gb|ADD59562.1| Type I restriction-modification system, M subunit [Escherichia coli
           O55:H7 str. CB9615]
 gi|326345337|gb|EGD69080.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli O157:H7 str. 1125]
          Length = 493

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 408 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 444


>gi|300992648|ref|ZP_07179962.1| N-6 DNA Methylase [Escherichia coli MS 200-1]
 gi|52420940|emb|CAH55819.1| putative restriction modification enzyme M subunit (methylase)
           [Escherichia coli]
 gi|300305269|gb|EFJ59789.1| N-6 DNA Methylase [Escherichia coli MS 200-1]
 gi|324014075|gb|EGB83294.1| N-6 DNA Methylase [Escherichia coli MS 60-1]
          Length = 501

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 45  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 99

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 100 PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 158

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 159 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRI----------DPKLGESIMDPACGTG 206

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 207 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 260

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 261 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 311

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 312 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 361

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 362 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 415

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 416 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 452


>gi|320665589|gb|EFX32635.1| Type I restriction-modification system, M subunit [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 489

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 170/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         +      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPLPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K L +  ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSRDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDVIARNFNLD 440


>gi|325498693|gb|EGC96552.1| type I restriction-modification system, M subunit [Escherichia
           fergusonii ECD227]
          Length = 493

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 37  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 92  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 151 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 198

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 199 GFLACAFDHVKNKYVKSIADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 252

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 253 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 303

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 304 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 353

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 354 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 407

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 408 EIDWWGNEADGFASRIENEQA---WKVSIDDVIARNFNLD 444


>gi|333011301|gb|EGK30715.1| hypothetical protein SFK272_0256 [Shigella flexneri K-272]
 gi|333012197|gb|EGK31579.1| hypothetical protein SFK227_5291 [Shigella flexneri K-227]
          Length = 489

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 168/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E         I      +    +    +  SL    + +  
Sbjct: 33  LLFLKIFDA-----QEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+         +  +
Sbjct: 88  PALKNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFT-SASERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILKDLQSAGN--AGEFYTPRAVTRFMVDRV----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +                HG E +   H +    ML+  +E         
Sbjct: 195 GFLACAFDHVKNKYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLAK----NGRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T L   +  +  +   ++        + +      K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNLLFFTKGQPTK---EIWFYE--HPYPAGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +G  SR+ + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADGFASRVENEQA---WKVSIDDLIARNFNLD 440


>gi|153824557|ref|ZP_01977224.1| type I restriction-modification system, M subunit [Vibrio cholerae
           MZO-2]
 gi|149741775|gb|EDM55804.1| type I restriction-modification system, M subunit [Vibrio cholerae
           MZO-2]
          Length = 496

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 178/496 (35%), Gaps = 58/496 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L      I  +   +         +   L    + +  
Sbjct: 33  LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+   D+    +  +
Sbjct: 88  PKLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       L           P +   + DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +     +          HG E +   H +C+  M++  +E         
Sbjct: 195 GFLACAFDHVKENYVTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K         +   +NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L+      GRA +VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLDK----NGRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K   +  ++ +Q
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTNPMKFEEFQQ 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+   +     ++ +   +  +F LD     + E      +    +
Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQGEVVSHDPEELLAN 460

Query: 512 QSFWLDILKPMMQQIY 527
                  +K +  Q+ 
Sbjct: 461 YQQQQQDIKALRDQLK 476


>gi|239828718|ref|YP_002951341.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239809011|gb|ACS26075.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 629

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/507 (18%), Positives = 178/507 (35%), Gaps = 96/507 (18%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79
           + L G+ +  ++  ++LP   L+ L             +        + ++  +      
Sbjct: 12  DLLRGETETVNYKLILLPVYSLKFL-------------EEKNLIPDEMRIKEILN----- 53

Query: 80  FYNTSEYSLSTLGSTNTRNNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
                         +N  + L+    Y+       K ++  F        +     L+++
Sbjct: 54  ------------HESNIADQLQRSFQYVEDNFHALKGVYTIF-----PENVVSNRTLFQL 96

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
               + + L      +       E L+            +  +P+ +  L   LL     
Sbjct: 97  LLKINAMTLSVKEWAELA-----EELLYHSYEWEGVRGGENYSPKSINQLGIELL----- 146

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
                   +  T YD T G GG L  A+ +        K       +GQE++  + A+  
Sbjct: 147 ------NPISGTFYDGTAGFGGTLVSALEYSKQNNGELK------LYGQEIDHTSWALAK 194

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAV 312
             +L+          L   + QG  L    F      K+F++ + + P+      +    
Sbjct: 195 LNLLLH-------DKLDAELIQGDALLNPAFIDGDRLKKFNFIMMDFPW-----VELRNH 242

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            +  K  +  RF  G+P        F+MH    LE      G+A +V+    LF   A  
Sbjct: 243 YETLKQDKYNRFIYGIPPRRSADFAFIMHTLASLESD----GKAVLVVPGRTLF---ASG 295

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
            E  IR+ L+  D+IEA++ALP  L+  T I T L IL+  K+ +R+G++  INA + + 
Sbjct: 296 MEQSIRQNLIAADVIEAVIALPAGLYKHTGIQTNLLILNKNKSLDRKGRILFINAENEFQ 355

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKF------SRMLDYRTFGYRRIKVLRPLRM 486
           + +   K   ++  D   +I+  Y +    +       S  ++     Y++    + +  
Sbjct: 356 TKQRYLK---VLTKDNIDKIISTYRNGLEIEQFSKFVSSNEIEEANLFYKKYLTEKVIDT 412

Query: 487 SF----ILDKTGLARLEADITWRKLSP 509
            F       K            +KL+ 
Sbjct: 413 DFFGKVQFVKESKEYSLNIYPLKKLTE 439


>gi|4210349|emb|CAA10699.1| HsdM protein [Escherichia coli]
          Length = 325

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 117/310 (37%), Gaps = 50/310 (16%)

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           + G    ++  V            +  +GQEL   T+ +    + IR L ++        
Sbjct: 1   SAGMFVQSVKFVESH---QGKSRDIALYGQELTATTYKLAKMNLAIRGLSANLGE----- 52

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDG 334
            +   T   D     +  Y L+NPPF             E +  +  RF G  +P   + 
Sbjct: 53  -RPADTFFSDQHPDLKADYILANPPFNL------KDWRNEAELTKDPRFAGYRMPPTGNA 105

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +++H+ +KL    +  G A  VL++  + +    SGE EIR  ++ENDLI+ ++ALP
Sbjct: 106 NYGWILHMLSKL----SANGTAGFVLANGSMSSN--TSGEGEIRAQMIENDLIDCMIALP 159

Query: 395 TDLFFRTNIATYLWILSNRKTEER-------RGKVQLINATDLWTSIRNEGKKRRIINDD 447
             LF+ T I   LW ++  K  +        +G+   I+A +L T I    K    +  +
Sbjct: 160 GQLFYTTQIPVCLWFMTKSKAADPAKGYRDRQGETLFIDARNLGTMISRTTK---ELTAE 216

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
               I D Y +                  R      L        + L + E    + K+
Sbjct: 217 DIATIADTYHA-----------------WRSTPEE-LAARIARGDSKLEKYEDQAGFCKV 258

Query: 508 SPLHQSFWLD 517
           + L      D
Sbjct: 259 ATLQDIKDND 268


>gi|331266253|ref|YP_004325883.1| type I restriction-modification system, M subunit, putative
           [Streptococcus oralis Uo5]
 gi|326682925|emb|CBZ00542.1| type I restriction-modification system, M subunit, putative
           [Streptococcus oralis Uo5]
          Length = 482

 Score =  182 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/509 (15%), Positives = 169/509 (33%), Gaps = 70/509 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+            ++L      I  +   +    +F N  +        T   
Sbjct: 20  LLFMKDLDSV--ELGRESDAEFLGISYEGIFPKDKPEYRWSTFKNIGDAQEVYRLMTQEI 77

Query: 98  NNLESYIAS------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF----SGIELHP 147
                 +        FS   +      +  +T+ ++        I   F    S I+   
Sbjct: 78  FPFIKNLKGDTDDTAFSRYMREAIFQINKPATLQKV------ISILDEFPTRGSDIDFDS 131

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           DT     + +IYE+L+ +  +        F TPR ++ +   L+      +         
Sbjct: 132 DTQGVNDIGDIYEYLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS------- 182

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGML 260
              DP  G+ GFL  A  ++            +       + HG + +     +    M+
Sbjct: 183 ---DPAMGSAGFLVSASRYLKRKKDEWETNPDNINHFHNNMFHGNDTDTTMLRLGAMNMM 239

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +  +E       +  I    +LS+D     ++   L+NPPF    + D  + +       
Sbjct: 240 LHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTSNDL------ 286

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K     +LFL      L+     GGRAA+++    LF   +      IR+ 
Sbjct: 287 -----LATVKTKKTELLFLALFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQE 335

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           ++EN  ++A++++P+ +F     ++T + I +         KV   +   +     +   
Sbjct: 336 IVENHKLDAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDD 391

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           KR+ I+D+    I   +   +N    +  D   F    + V       + L       +E
Sbjct: 392 KRQPISDNDIPDITQRFHQLDNEAERKRTDQSFF----VPVDEIKDNDYDLSINKYKEIE 447

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            +    + + +      D+ K +   +  
Sbjct: 448 YERVEYEPTEVILKKINDLEKEIQAGLAE 476


>gi|198282372|ref|YP_002218693.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246893|gb|ACH82486.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 484

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/505 (18%), Positives = 176/505 (34%), Gaps = 71/505 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLST 90
              L+ L+  LE  R A+  +      + I  ++F        K A     +    S   
Sbjct: 32  LLFLKYLDA-LEQDR-AMEAELEGRPYTFILEDAFRWEHWAAPKTADGRMDHHKAMSGDD 89

Query: 91  LGSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIEL 145
           L        L  Y++ F   A     I       FS    +++    L +I +   G+  
Sbjct: 90  LR-DFVNIRLFPYLSGFKRRATGSNTIEYKIGEIFSEIKNKIQSGYNLREIVEIIDGLRF 148

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                    +S++YE  I+  G        ++ TPR ++     ++          +P +
Sbjct: 149 R-SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAIVQVV----------APKV 196

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +YD   G+ GFL +A +++           +       +G+E +   + + +  M++
Sbjct: 197 GEKIYDGAVGSAGFLCEAFDYLKAQPGLTTSDMQTLQERTFYGKEKKSLAYVIAIMNMIL 256

Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             ++       + NI   +TL++   D+    R    L+NPPFG K  K+          
Sbjct: 257 HGID-------APNIVHTNTLAENLMDIQPKDRVDVVLANPPFGGKERKEVQQNFPI--- 306

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      K  + + LFL H    L+     GGR  +V+ ++ L N    S    +R
Sbjct: 307 -----------KTGETAFLFLQHFIRMLK----AGGRGGVVIKNTFLSNTDNAS--VSLR 349

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + LLE+  +  ++ LP   F    + T +          +    QL          RN G
Sbjct: 350 KLLLEDCNLHTVLDLPGGTFQGAGVKTVVLFFDKGAPTRKVWYYQL-------NPGRNMG 402

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            K   +ND+   + + +  ++ +   S  +D      R        +     D+  L   
Sbjct: 403 -KTNPLNDNDLAEFVALQKTKADSPQSWTVDVSGIDTR--TYDLSAKNPNGGDEKVLRSP 459

Query: 499 EADITWRKLSPLHQSFWLDILKPMM 523
           E  +          +  L  ++ ++
Sbjct: 460 EEILDEIAALDAESAEVLASIRGLL 484


>gi|297538978|ref|YP_003674747.1| adenine-specific DNA-methyltransferase [Methylotenera sp. 301]
 gi|297258325|gb|ADI30170.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylotenera sp. 301]
          Length = 484

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/455 (18%), Positives = 159/455 (34%), Gaps = 79/455 (17%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV-------KVAGYSFYNTSEYSLSTL 91
             L+ L+  LE T+ A+  +      + I   ++        K     F + +  +   L
Sbjct: 33  LFLKYLDA-LEQTK-AMEAELEGKAYNFIVDAAYRWPTWAAPKTTDGKFDHNNALTGDDL 90

Query: 92  GSTNTRNNLESYIASFSD----------NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
                   L  Y+  F                IF + +      +++    L ++ +   
Sbjct: 91  K-DFVNLKLFPYLKGFKQRATGPNTIEYKIGEIFGEIN-----NKIQSGYNLREVIERID 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +           +S++YE  I+  G        ++ TPR ++     +           
Sbjct: 145 ELSF-NTQAEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMIQV----------T 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVA 257
           +P +  T+YD   G+ GFL +A +++        S          +G+E +   + + + 
Sbjct: 193 NPKIGETIYDGAVGSAGFLCEAFDYLRSQPNLSTSDLATLQTSTFYGKEKKSLAYVIAIM 252

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            M++  +E       + NI   +TL++   D+    R+   L+NPPFG K   +      
Sbjct: 253 NMILHGIE-------APNIIHTNTLAENISDIQEKDRYDIILANPPFGGKERAEVQQNFP 305

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                          K  + + LFL H    L      GGRAA+V+ ++ L N    S  
Sbjct: 306 I--------------KTGETAFLFLQHFIKSLR----AGGRAAVVIKNTFLSNTDNAS-- 345

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             +R+ LLE+  +  ++  P   F    + T +               QL          
Sbjct: 346 VSLRKLLLESCNLHTVLDCPGGTFLGAGVKTVVLFFEKGAPTRNTWFYQL-------DPG 398

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           RN G K   +NDD   + L +  +  +   S  + 
Sbjct: 399 RNMG-KTNPLNDDDLAEFLTLQKTFADSPKSWNVS 432


>gi|42528246|ref|NP_973344.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|41819516|gb|AAS13263.1| type I restriction-modification system, M subunit [Treponema
           denticola ATCC 35405]
 gi|325474564|gb|EGC77750.1| type I restriction-modification system [Treponema denticola F0402]
          Length = 480

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 142/438 (32%), Gaps = 84/438 (19%)

Query: 1   MTEFTGSA----ASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRS 53
           M +   +      +L   +W  A+ L           F   I+  T L  L         
Sbjct: 1   MAKKEATQAKPEQALTKKVWNMADVL-----AAAGIGFTDYIIQLTYLLFL--------- 46

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
                          ++   +  G             +   +  + L  Y     +    
Sbjct: 47  --------------KMDFEKESYGLGSALPDGSKWKDIVQLDGPDQLAKY-----EKILE 87

Query: 114 IFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           + +  D      F+    ++ K  LL K+            ++   +   IYE ++ + G
Sbjct: 88  VLQAADGLIGAIFTEAQNKIAKPALLKKLIGMIDEENWF--SMDGDLKGAIYESILEKNG 145

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +   GA  + TPR +++    ++           P +  T+ DP CGTGGFL  A +++
Sbjct: 146 QDKKSGAGQYFTPRPLINAMVDVV----------QPKITETVADPACGTGGFLLSAYDYM 195

Query: 228 ADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     +        G ++ P    +    + +  +  D        I+   +L  
Sbjct: 196 RKQSDEQSKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGVDTTP-----IKCEDSLEH 250

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +          L+NPPFG +     D                 +   S+  + FL H+  
Sbjct: 251 E--PEHLVDVILANPPFGARPAGSVDISTMRSDL---------IVTTSNNQLNFLQHMMV 299

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+     GGRA IVL  + LF   AG     +R+ LL++  +  I+ LPT +F+   + 
Sbjct: 300 MLKD----GGRAGIVLPDNVLFADGAGEI---LRKKLLKDFNLHTILRLPTGIFYANGVK 352

Query: 405 TYLWILSNRKTEERRGKV 422
             +         +     
Sbjct: 353 ANVLFFEKGSPTQETWYY 370


>gi|167837438|ref|ZP_02464321.1| type I restriction modification system, methyltransferase subunit
           [Burkholderia thailandensis MSMB43]
          Length = 494

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/550 (19%), Positives = 189/550 (34%), Gaps = 91/550 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGD---FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M+  T    S+ N  W  A  L  D   +    + + I     L+      +   S    
Sbjct: 1   MSNAT---QSIVNKAWSFAHVLRDDGLSYMA--YTEQITFLLFLKMAHELTQSPYSR--- 52

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                    +D ES V   G        + L  LG       L         + +     
Sbjct: 53  --PPIVPKGMDWESLVAKDGDELEVHYRHVLDELGRQ--PGMLGEIFKKARPDIQN---- 104

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
               +T+ +L        I     G      ++   V  +IYE L+ +  +E  +GA  +
Sbjct: 105 ---PATLKKL--------IVDLIGGENWM--SLQADVKGDIYEGLLSKSAAESPKGAGQY 151

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----- 232
            TPR+++                  P    T+ DP CGTGGFL  A+++V          
Sbjct: 152 FTPRELIKAIVD----------AMQPAPSDTVCDPACGTGGFLMQAIDYVNRHYGADLDP 201

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGK 290
              K        G EL P T  + +  + +  +     +     I+ G  +L+      +
Sbjct: 202 DQKKHLRNGFVQGGELVPATARLAIMNLYLHGV-----QSQDCPIRSGVDSLAS--QPSE 254

Query: 291 RFHYCLSNPPFGKKWEKD--KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           RF   L+NPPFGKK       +  E E +     R         +  + F+ H+ + L++
Sbjct: 255 RFSMVLTNPPFGKKSSISVVNEEGELEKEEQAYERTDFWTT-TKNKQLNFVQHIKSLLKI 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                GRAA+VL  + LF G A  GE+ IR+ LL+   +  ++ LPT +F+   +   + 
Sbjct: 314 H----GRAAVVLPDNVLFEGGA--GET-IRKNLLQQFDVHTLLRLPTGIFYAQGVKANVL 366

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYV--SRENGKF 464
               +  +E            ++    N     K   +      + ++ +   +R   K 
Sbjct: 367 FFDAKPAQEAPW----TKGLWVYDLRTNMHFTLKTNPLKRANLDEFVECFNAENRHERKA 422

Query: 465 SR----------MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           +             DY     R       L + ++ D+     LE      + + L Q  
Sbjct: 423 TWGEAQPDGRWRYFDYDELVKRDKT---NLDIFWLKDED----LEDSENLPEPAVLAQEI 475

Query: 515 WLDILKPMMQ 524
             D+   + Q
Sbjct: 476 ADDLAAALEQ 485


>gi|83943083|ref|ZP_00955543.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp.
           EE-36]
 gi|83846091|gb|EAP83968.1| type I restriction enzyme StySPI M protein [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 154/461 (33%), Gaps = 86/461 (18%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              ++   IW     L GD   +  +   +     L+                       
Sbjct: 2   KNENVVQRIWNLCHILRGDGISYHQYVSELTYLLFLK----------------------- 38

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA-----SFSDNAKAIFEDFD- 119
                   +  G      +++  + L +      L  Y         S     I      
Sbjct: 39  ------IAQENGVERLLPAKFRWNDLVNHPEDGLLGFYQEMLTHLGTSAE-SEIIRAIYA 91

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +T+     +  L  +    + IE H   + D     IYE LI +   +V  GA  + T
Sbjct: 92  FPTTV--FSHSENLRAVIDGITEIEWH--DLSDDRFGQIYEGLIEKSSQDVRSGAGQYFT 147

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR +V+    ++           P +   + DP  G+GGFL  A   +    S       
Sbjct: 148 PRPLVNSMVKVM----------RPRLGEMIQDPAAGSGGFLIAADQFIRSGNSDSAYSKN 197

Query: 240 LVPH-GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
              + G E+E  T  +C+    +  L+++        +  G  L+ D    +  +  L+N
Sbjct: 198 PPKYQGAEIEKNTRRICLMNTFLNGLDAE--------VFYGDALTDDGAGFQSANLVLAN 249

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAA 357
           PPFG             +K G   +    +P   ++  + FL H+   L      GGRAA
Sbjct: 250 PPFG-------------NKAGSRRKLRADIPYPNANKQLAFLQHIYLCL----ETGGRAA 292

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF    G     +RR L+E+  +  ++ LP  +F    + T +   S    E+
Sbjct: 293 VVLPDNALFEEGVG---KLVRRDLMESCNLHTVLRLPKGIFSSAGVKTNVLFFSRD-GEK 348

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               V   +      ++   G K   +  +   +    +  
Sbjct: 349 STEDVWFYDLRS---NMPTFG-KNNQLKPEHFTEFERCFGE 385


>gi|332076170|gb|EGI86636.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41301]
          Length = 497

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 99/559 (17%)

Query: 5   TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   +  + +W+       A  L  + +   +         ++ L+             
Sbjct: 3   TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44

Query: 59  YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111
                G   D E         F  +  EY  ST    N  +  E Y      I  F  N 
Sbjct: 45  ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99

Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160
           K   +D  FS         I +         I   F      ++   D      + +IYE
Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +  +        F TPR ++ +   L+      +            DP  G+ GFL
Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207

Query: 221 TDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             A  ++            +       + HG + +     +    M++  +E       +
Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I    +LS+D     ++   L+NPPF    + +  + +                K   
Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL      L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++
Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P+ +F     ++T + I +         KV   +   +     +   KR+ I+D+    I
Sbjct: 364 PSGVFKPYAGVSTVILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDI 419

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           ++ +   E     +  D   F    + V       + L       +E +    + + +  
Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475

Query: 513 SFWLDILKPMMQQIYPYGW 531
               D+ K +   +     
Sbjct: 476 KKINDLEKEIQAGLAELEK 494


>gi|11387194|sp|Q47282|T1ME_ECOLX RecName: Full=Type I restriction enzyme EcoEI M protein;
           Short=M.EcoEI
 gi|304897|gb|AAD15049.1| EcoE type I restriction modification enzyme M subunit [Escherichia
           coli]
          Length = 490

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/460 (19%), Positives = 169/460 (36%), Gaps = 58/460 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +     T+    E         I      +    +    +  +L    + +  
Sbjct: 33  LLFLKIFD-----TQEEELELEQDDYQFPIPQRYLWRSWAANSEGITGDALLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+    +    +  +
Sbjct: 88  PTLKNLTAPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV D     +          +G E +   H +C   ML+  +E         
Sbjct: 195 GFLACAFDHVKDNYVKTTEDHKTLQQQIYGVEKKQLPHLLCTTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPDGVKNYSKTKPMKFEEFQA 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +D + +  +   SR  + +     ++ +   +  +F LD
Sbjct: 404 EIDWWGNEADDFASREENNQA---WKVGIDDIIARNFNLD 440


>gi|332663456|ref|YP_004446244.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332270|gb|AEE49371.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 487

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 87/507 (17%), Positives = 180/507 (35%), Gaps = 74/507 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+  L+  R              I  E+   +    F NT    +    +    
Sbjct: 35  LLFIRRLDE-LQTQREQKANLLKRPIEDPIYHENEYALRWSHFKNTDPEVMYKRFTQADG 93

Query: 98  -----NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                 N+ S  A+FS   K       F     RL     L ++ +  S I++       
Sbjct: 94  VFDFLRNVGSRSAAFSKYMKG----ATFMIPTPRL-----LAQVVEMLSNIDMS----DR 140

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+L+ +     +     F TPR ++ L   ++    +              DP
Sbjct: 141 DTKGDVYEYLLSKIA--SAGQNGQFRTPRHIIRLMVDMVQPTLEDFI----------CDP 188

Query: 213 TCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           + GT GFLT A  ++ +  ++        +     +  G E +P    +    +++  +E
Sbjct: 189 SAGTCGFLTGAGEYIREHYANELYADGAQEHFQNHMFMGMEFDPTMIRIGAMNLILHGIE 248

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  +  ++    LS+ +    +R    L+NPPF  K   D++AV+ +         
Sbjct: 249 -------NPQLRDVDALSEANTDFTERATLVLANPPF--KGSLDREAVDGKILQTVD--- 296

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                      +LFL  +   L+     GGRAA+++    LF   +     +IR  L+E 
Sbjct: 297 ------SKKTELLFLALILKGLK----LGGRAAVIVPDGVLF--GSSKAHQQIRTELIER 344

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             ++A++++P+ +F     ++T + + +   +     +V   +   +     +   KR  
Sbjct: 345 QRLQAVISMPSGVFKPYAGVSTAILLFTKTNSG-GTDQVWFYD---MQADGFSLDDKRNP 400

Query: 444 INDDQRRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           +       I+  +        R+  + S ++  +     +  +           +   A 
Sbjct: 401 LPHSDLPDIVQRFQHLEAETQRQRTERSFLVPLQEIRDNKYDLSINRYKEVQYAEKTYAA 460

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQ 524
             A I   +     ++  L+ LK M+ 
Sbjct: 461 PGAIIAEIEALDRERTVLLNELKGMLA 487


>gi|296122895|ref|YP_003630673.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
 gi|296015235|gb|ADG68474.1| Site-specific DNA-methyltransferase (adenine- specific)
           [Planctomyces limnophilus DSM 3776]
          Length = 484

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 151/449 (33%), Gaps = 65/449 (14%)

Query: 38  FTLLRRLECALEPTR--SAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTS-EYSLSTLG 92
              L+ L+  LE  +   A  E  KY          E++    G                
Sbjct: 32  LLFLKYLDG-LEQDKADEAALEGKKYTFILDPPYRWEAWAAPKGKDGLIDHNRAQTGDDL 90

Query: 93  STNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147
                  L  Y+  F   A     I       F     ++     L +I  +   +    
Sbjct: 91  RDFVNEKLFPYLHGFKQKAIGPNTIEYKIGEIFGEIKNKISSGYNLREIIDHIDELRFR- 149

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S++YE  I+  G        ++ TPR ++     ++           P +  
Sbjct: 150 SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMIQVV----------KPKIGE 198

Query: 208 TLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            +YD   G+ GFL +A  ++           K       +G+E +   + + +  M++  
Sbjct: 199 RIYDGAVGSAGFLCEAFEYLRAKRGLTTKEAKTLQEKTFYGKEKKSLAYVIAIMNMILHG 258

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +E       + NI   +TL++   D+    R    L+NPPFG K  K+            
Sbjct: 259 IE-------APNIVHTNTLTENLADIQEKDRVDVVLANPPFGGKERKEVQQNFPI----- 306

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    +  + + LFL H    L+     GGR  +V+ ++ L N    S    +R+ 
Sbjct: 307 ---------RTGETAFLFLQHFIKILK----AGGRGGVVIKNTFLSNTDNAS--VSLRKL 351

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLE+  + A++  P   F    + T +          +    QL          RN G K
Sbjct: 352 LLESCNLYAVLDCPGGTFQGAGVKTVVLFFEKGAPTRKVWFYQL-------DPGRNLG-K 403

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLD 469
              +ND    + +++  +  +   S  ++
Sbjct: 404 TNPLNDADLAEFIELQATCADSPKSWSVE 432


>gi|226940929|ref|YP_002796003.1| HsdM [Laribacter hongkongensis HLHK9]
 gi|226715856|gb|ACO74994.1| HsdM [Laribacter hongkongensis HLHK9]
          Length = 283

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/198 (33%), Positives = 100/198 (50%), Gaps = 15/198 (7%)

Query: 108 SDNAKAI----FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           S   + I                 ++AGLLY + + F+ I+LHP +V +  M  ++E LI
Sbjct: 96  SAALQDIRDVLLAGAVLGEQWVTADRAGLLYLVTEKFANIDLHPASVDNASMGLVFEELI 155

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+F    +E A +  TPR+V+ L   LL   DD +      ++RTLYDPT GTGG L+ A
Sbjct: 156 RKFAEISNETAGEHFTPREVIRLMVNLLFIEDDDVLTAGNAVVRTLYDPTAGTGGMLSVA 215

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +A+     ++       GQEL  E++A+C A MLI+  +         NI  G+TLS
Sbjct: 216 GEFLAEHNPQARL----TLFGQELNDESYAICKADMLIKGQDV-------GNIVAGNTLS 264

Query: 284 KDLFTGKRFHYCLSNPPF 301
            D    ++F Y L + P+
Sbjct: 265 DDGHGARKFDYMLCSAPW 282


>gi|15900769|ref|NP_345373.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae TIGR4]
 gi|15902834|ref|NP_358384.1| type I restriction-modification system M subunit [Streptococcus
           pneumoniae R6]
 gi|111656838|ref|ZP_01407685.1| hypothetical protein SpneT_02001902 [Streptococcus pneumoniae
           TIGR4]
 gi|116515872|ref|YP_816267.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae D39]
 gi|148984620|ref|ZP_01817888.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|148988313|ref|ZP_01819760.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|148993698|ref|ZP_01823145.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|148997030|ref|ZP_01824684.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|149002423|ref|ZP_01827357.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|149007169|ref|ZP_01830833.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|149010480|ref|ZP_01831851.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|168484773|ref|ZP_02709718.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1873-00]
 gi|168485835|ref|ZP_02710343.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1087-00]
 gi|168490319|ref|ZP_02714518.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae SP195]
 gi|168490977|ref|ZP_02715120.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493039|ref|ZP_02717182.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC3059-06]
 gi|168575544|ref|ZP_02721480.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae MLV-016]
 gi|169832734|ref|YP_001694340.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Hungary19A-6]
 gi|182683805|ref|YP_001835552.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae CGSP14]
 gi|221231662|ref|YP_002510814.1| type I RM modification enzyme [Streptococcus pneumoniae ATCC
           700669]
 gi|225854392|ref|YP_002735904.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae JJA]
 gi|225856550|ref|YP_002738061.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae P1031]
 gi|225861221|ref|YP_002742730.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650540|ref|ZP_04524792.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822643|ref|ZP_04598488.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229447|ref|ZP_06963128.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254225|ref|ZP_06977811.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503107|ref|YP_003725047.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303260412|ref|ZP_07346381.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP-BS293]
 gi|303262769|ref|ZP_07348707.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS292]
 gi|303265058|ref|ZP_07350972.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS397]
 gi|303267632|ref|ZP_07353470.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS457]
 gi|303269990|ref|ZP_07355722.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS458]
 gi|14972360|gb|AAK75013.1| putative type I restriction-modification system, M subunit
           [Streptococcus pneumoniae TIGR4]
 gi|15458387|gb|AAK99594.1| Type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae R6]
 gi|116076448|gb|ABJ54168.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae D39]
 gi|147756730|gb|EDK63770.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP11-BS70]
 gi|147759360|gb|EDK66352.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS69]
 gi|147761207|gb|EDK68174.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP18-BS74]
 gi|147764961|gb|EDK71890.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP19-BS75]
 gi|147923011|gb|EDK74126.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP3-BS71]
 gi|147925994|gb|EDK77068.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP6-BS73]
 gi|147927778|gb|EDK78801.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP9-BS68]
 gi|168995236|gb|ACA35848.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Hungary19A-6]
 gi|172042062|gb|EDT50108.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1873-00]
 gi|182629139|gb|ACB90087.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae CGSP14]
 gi|183570929|gb|EDT91457.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC1087-00]
 gi|183571347|gb|EDT91875.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae SP195]
 gi|183574577|gb|EDT95105.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC0288-04]
 gi|183577032|gb|EDT97560.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae CDC3059-06]
 gi|183578644|gb|EDT99172.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae MLV-016]
 gi|220674122|emb|CAR68641.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           ATCC 700669]
 gi|225723691|gb|ACO19544.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae JJA]
 gi|225726174|gb|ACO22026.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae P1031]
 gi|225728274|gb|ACO24125.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238702|gb|ADI69833.1| type I site-specific deoxyribonuclease [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794017|emb|CBW36415.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           INV104]
 gi|301799875|emb|CBW32451.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           OXC141]
 gi|301801712|emb|CBW34418.1| putative type I RM modification enzyme [Streptococcus pneumoniae
           INV200]
 gi|302636091|gb|EFL66588.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638447|gb|EFL68913.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP-BS293]
 gi|302640481|gb|EFL70896.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS458]
 gi|302642831|gb|EFL73140.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS457]
 gi|302645418|gb|EFL75651.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae BS397]
 gi|332073216|gb|EGI83695.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17570]
          Length = 497

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 93/559 (16%), Positives = 182/559 (32%), Gaps = 99/559 (17%)

Query: 5   TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   +  + +W+       A  L  + +   +         ++ L+             
Sbjct: 3   TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44

Query: 59  YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111
                G   D E         F  +  EY  ST    N  +  E Y      I  F  N 
Sbjct: 45  ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99

Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160
           K   +D  FS         I +         I   F      ++   D      + +IYE
Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +  +        F TPR ++ +   L+      +            DP  G+ GFL
Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207

Query: 221 TDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             A  ++            +       + HG + +     +    M++  +E       +
Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I    +LS+D     ++   L+NPPF    + +  + +                K   
Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL      L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++
Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P+ +F     ++T + I +         KV   +   +     +   KR+ I+D+    I
Sbjct: 364 PSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDI 419

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           ++ +   E     +  D   F    + V       + L       +E +    + + +  
Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475

Query: 513 SFWLDILKPMMQQIYPYGW 531
               D+ K +   +     
Sbjct: 476 KKINDLEKEIQAGLAELEK 494


>gi|328947988|ref|YP_004365325.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
 gi|328448312|gb|AEB14028.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           succinifaciens DSM 2489]
          Length = 480

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/548 (16%), Positives = 177/548 (32%), Gaps = 90/548 (16%)

Query: 1   MTEFTGSA----ASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRS 53
           M +   +      +L   +W  A+ L           F   I+  T L  L   ++  + 
Sbjct: 1   MAKKERTQAKPEQTLTKKVWNMADVL-----AAAGVGFTDYIIQLTYLLFL--KMDSEKE 53

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
           +      +        +  V++ G       E  L TL + +                  
Sbjct: 54  SYG--LGSALPEGSKWKDIVELDGPDQLAKYEKILETLQAKD-----------------G 94

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +     F+    ++ K  LL K+            ++   +   IYE ++ + G +   G
Sbjct: 95  LIGAI-FTEAQNKISKPALLKKLIGMIDEENWF--SMEGDLKGAIYESILEKNGQDKKSG 151

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A  + TPR +++    ++           P +  T+ DP CGTGGFL  A + +      
Sbjct: 152 AGQYFTPRPLINAMVDVI----------QPQITETVADPACGTGGFLLAAYDFMRKQSDE 201

Query: 234 H---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +        G ++ P    +    + +  + +D        I+   +L  +     
Sbjct: 202 QDKVEFLQTKALRGNDITPLVVTLASMNLYLHDIGTDTTP-----IKCEDSLEHE--PEH 254

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
                L+NPPFG +     D     +           +   S+  + FL H+   L+   
Sbjct: 255 LVDVILANPPFGARPAGSVDITTMRNDL---------IVTTSNNQLNFLQHMMLMLKD-- 303

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRA IVL  + LF   AG    ++R+ LL++  +  I+ LPT +F+   +   +   
Sbjct: 304 --GGRAGIVLPDNVLFADGAG---EKLRKKLLKDFNLHTILRLPTGIFYANGVKANVLFF 358

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRML 468
                 +             + +        + +        +  Y     E+ K +   
Sbjct: 359 EKGTPTKETWYY-------DYRTGIKHTLATKPLKRSDLDDFVSCYCAGHMEDRKETWSE 411

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           +  T  +R+  V   L            +   DI+W K     +   L  L   +Q+   
Sbjct: 412 ENPTGRWRKYNVDELLER---------DKTSLDISWIKDKDDLEDVTLKELFSTIQEKGK 462

Query: 529 YGWAESFV 536
                   
Sbjct: 463 NINNAINQ 470


>gi|325678123|ref|ZP_08157755.1| putative type I restriction-modification system, M subunit
           [Ruminococcus albus 8]
 gi|324110179|gb|EGC04363.1| putative type I restriction-modification system, M subunit
           [Ruminococcus albus 8]
          Length = 542

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/548 (16%), Positives = 190/548 (34%), Gaps = 77/548 (14%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  +I    L + L          + ++  +     I      +      ++T   
Sbjct: 28  DGNEYK-IITQVFLYKYLNDKFGYEIKKLDKRIASAEKWEIAYSELSEDEREDLFDTMNP 86

Query: 87  SLSTLGSTNTRNNL------ESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYK---- 135
            +  L   +  ++L        +   F      I +   D  ST         L++    
Sbjct: 87  DIPRLNPEHLISHLWNQQAKGDFDLIFDQTMIDIADKNIDIFSTQTTQNTKIPLFERLTQ 146

Query: 136 --------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180
                         +                    + I+E+LI+ + +       ++ TP
Sbjct: 147 YVTDEAQRAPFARALVDKLVNFSFEETFSEHYDFFAAIFEYLIKDYNTAGGGKYAEYYTP 206

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  +   LL+  D  L           YDP+ GTG  L    + + +           
Sbjct: 207 HAIATIMARLLVGDDADLHNIE------CYDPSAGTGTLLMALGHQIGE--------DRC 252

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHY 294
               Q++   ++ +    +++  L          +  QG TL      S D  + + F Y
Sbjct: 253 TIFAQDISQRSNKMLKLNLILNGL-----VSSLDHAIQGDTLVAPYHKSDDGQSLRTFDY 307

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLANKLE 347
            +SNPPF   +   ++ +          RF  G+PK       SM     F+ H+ N L+
Sbjct: 308 VVSNPPFKMDFSDTREKIAA-----MPARFWAGVPKVPAKKKESMAIYTCFIQHVVNSLK 362

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+ AIV+ +  L      S E  + + L+E+ ++   V++P+++F  T     +
Sbjct: 363 KT----GKGAIVVPTGFL--TAKSSVEGAVLKKLVEDHIVYGAVSMPSNVFANTGTNVSV 416

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
               N +T     +V LI+A+ L    ++   ++R +  ++  +I+  + ++E    FS 
Sbjct: 417 LFFDNSRTA---DRVVLIDASKLGEEYKDGNLQKRRLRPEEIEKIITTFRNKEAVDDFSV 473

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMM 523
            + Y     ++  +         ++   L + E +          QSF+ +   +   +M
Sbjct: 474 AVTYEEIISKKYSLAAGQYFDVKIEYVELTQEEFEAKMSAFKTELQSFFDEGNALQAEIM 533

Query: 524 QQIYPYGW 531
           +Q+    +
Sbjct: 534 KQLGKVKY 541


>gi|84499587|ref|ZP_00997875.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597]
 gi|84392731|gb|EAQ04942.1| type I restriction enzym, M protein [Oceanicola batsensis HTCC2597]
          Length = 512

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 150/430 (34%), Gaps = 71/430 (16%)

Query: 35  ILPFTLLRRLECA--LEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           I     ++RL+    LE +++       E+ +   G++    ++  +    F N     +
Sbjct: 32  ITYLLFIKRLDDLHTLEESKAETLGLEMERRIFPEGNDDKGRAYEDMRWSRFKNFEAREM 91

Query: 89  STLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
             +   +    L        S+  + K       FSS         LL K+ +    I +
Sbjct: 92  MEVVDEHVFPFLRQLGEEGSSYGKHMKD--ARLGFSS-------PSLLSKVVEMLDQIPM 142

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                      ++YE+++ +     +     F TPR ++ L   L           +P  
Sbjct: 143 D----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIQLMVEL----------TAPTP 186

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAG 258
              + DP  GT GFL  A  ++                      HG + +P    +    
Sbjct: 187 DDVICDPASGTCGFLVAAGEYLRANHPELFRNEKQRAHFHKDMFHGFDFDPTMLRIGAMN 246

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           M++  +E         +I    +L+++      ++   L+NPPF    + D  A + +  
Sbjct: 247 MVLHGVE-------DADISYRDSLAEEHNADAGKYSLILANPPFAGSLDYDSTAKDLQ-- 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     + K     +LF+      L+     GGRAA+V+    LF   A     EI
Sbjct: 298 ---------KIVKTKKTELLFVGLFLRLLKT----GGRAAVVVPDGVLF--GASKAHKEI 342

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           RR L+E+  ++A++ LP+ +F     ++T + + +          V   +         +
Sbjct: 343 RRMLVEDHKLDAVIKLPSGVFRPYAGVSTAILVFTKT-GVGGTDHVWFYDLQADGI---S 398

Query: 437 EGKKRRIIND 446
              KR  +  
Sbjct: 399 LDDKRTPLLP 408


>gi|332201350|gb|EGJ15420.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368]
 gi|332204889|gb|EGJ18954.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47901]
          Length = 460

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 152/438 (34%), Gaps = 62/438 (14%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEH 161
           +FS   +      +  +T+ +         I   F      ++   D      + +IYE+
Sbjct: 70  AFSRYMREAIFQINKPATLQKA------ISILDVFPTRGLDVDFDNDKQSITDIGDIYEY 123

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+ +  +        F TPR ++ +   L+      +            DP  G+ GFL 
Sbjct: 124 LLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLV 171

Query: 222 DAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
            A  ++            +       + HG + +     +    M++  +E       + 
Sbjct: 172 SASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NP 224

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I    +LS+D     ++   L+NPPF    + +  + +                K    
Sbjct: 225 QISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKKT 273

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL      L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P
Sbjct: 274 ELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMP 327

Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           + +F     ++T + I +         KV   +   +     +   KR+ I+D+    I+
Sbjct: 328 SGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDII 383

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           + +   E     +  D   F    + V       + L       +E +    + + +   
Sbjct: 384 ERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILK 439

Query: 514 FWLDILKPMMQQIYPYGW 531
              D+ K +   +     
Sbjct: 440 KINDLEKEIQAGLAELEK 457


>gi|311742871|ref|ZP_07716679.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM
           15272]
 gi|311313551|gb|EFQ83460.1| type I site-specific deoxyribonuclease [Aeromicrobium marinum DSM
           15272]
          Length = 484

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 88/508 (17%), Positives = 169/508 (33%), Gaps = 75/508 (14%)

Query: 35  ILPFTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           I     +RRL+    L  +++ V                     G  F NTS   +    
Sbjct: 32  ITYLLFIRRLDDVQTLAESKARV--TGGEVENPVFLPGQAHLRWGQ-FKNTSPEVMHRTI 88

Query: 93  STNTRNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           + +    L     S  +S++ K     F        +    LL K+      I +     
Sbjct: 89  ADDVFPFLRGLGDSSTYSEHMKD--ARF-------TIPTPALLSKVVDMLDDIPMA---- 135

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 ++YE+L+ +     +     F TPR ++ L   +           +P     + 
Sbjct: 136 DRDTNGDLYEYLLSKIA--SAGVNGQFRTPRHIIDLMVRM----------TAPQPRDEVC 183

Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
           DP CGTGGFL  A  +V +  +         +     + HG + +     +    ML+  
Sbjct: 184 DPACGTGGFLVAASEYVRETHADALLDANQRQHFHHSMFHGYDFDSTMLRIGSMNMLMHG 243

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +E       S +I+   +LS+      +++   L+NPPF          ++ E    +L 
Sbjct: 244 VE-------SPDIRYRDSLSEGAAGDTEKYTLILANPPFAGS-------LDYEATAKDLQ 289

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R    + K         +            GGRAA+V+    LF   +     E+RR ++
Sbjct: 290 R----VVKTKKTE----LLFLALFLKLLKPGGRAAVVVPDGVLF--GSSKAHKELRRIMV 339

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E   ++A+V LP+ +F     ++T +   +   +      V   +         +   KR
Sbjct: 340 EEQKLDAVVKLPSGVFRPYAGVSTAILFFTKTNSG-GTDDVWFYDVRADG---FSLDDKR 395

Query: 442 RIINDDQRRQILDIYVSREN------GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
             +  D    +L  + +          + S ++       +   +        + D+   
Sbjct: 396 NSVEADDLPDVLTRWQNLAEEDDRARTEQSFLVPKADIVAQDYDLSLNRHKEIVHDEIEH 455

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMM 523
                 I   ++     +  L  LK M+
Sbjct: 456 RAPLEIIADIEILEDEIARGLSELKAML 483


>gi|307127562|ref|YP_003879593.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 670-6B]
 gi|306484624|gb|ADM91493.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 670-6B]
 gi|332077301|gb|EGI87763.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 497

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 93/559 (16%), Positives = 181/559 (32%), Gaps = 99/559 (17%)

Query: 5   TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   +  + +W+       A  L  + +   +         ++ L+             
Sbjct: 3   TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44

Query: 59  YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111
                G   D E         F  +  EY  ST    N  +  E Y      I  F  N 
Sbjct: 45  ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99

Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160
           K   +D  FS         I +         I   F      ++   D      + +IYE
Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +  +        F TPR ++ +   L+      +            DP  G+ GFL
Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207

Query: 221 TDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             A  ++            +       + HG + +     +    M++  +E       +
Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I    +LS+D     ++   L+NPPF    + +  + +                K   
Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL      L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++
Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P+ +F     ++T + I +         KV   +   +     +   KR+ I D+    I
Sbjct: 364 PSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPIRDNDIPDI 419

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           ++ +   E     +  D   F    + V       + L       +E +    + + +  
Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475

Query: 513 SFWLDILKPMMQQIYPYGW 531
               D+ K +   +     
Sbjct: 476 KKINDLEKEIQAGLAELEK 494


>gi|323139525|ref|ZP_08074571.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242]
 gi|322395204|gb|EFX97759.1| N-6 DNA methylase [Methylocystis sp. ATCC 49242]
          Length = 717

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 109/558 (19%), Positives = 190/558 (34%), Gaps = 91/558 (16%)

Query: 6   GSAASLANFIWKNA------ED-LWGDFKHTDFGKVILPFT----LLRRLECALEPTRSA 54
            ++  L + +  +A      +  L GD          LP       L+ L+  LE  R  
Sbjct: 16  TTSQMLGSLL-NSARKIMRKDKGLNGDLDR-------LPLLTWIMFLKFLDD-LEQQREE 66

Query: 55  -----------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
                        E    +     D +        SF N  E              L +Y
Sbjct: 67  EAALSGKKFKAAIEAPYRWRDWAADPQGITGDELLSFINAEEA--VRADGQK-GPGLFAY 123

Query: 104 IASFS----DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           + S S    DN + +     F     R++   LL  I     GI     +     +  +Y
Sbjct: 124 LRSLSSSNGDNRRDVIATV-FKGVDNRMKSGYLLRDIVNKVGGIHFT-SSDELHTLGALY 181

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++R         + +F TPR VV     +            P +  T+ DP  GTGGF
Sbjct: 182 ESMLREMRDAAG-DSGEFYTPRAVVRFMVEV----------TDPRLGETVLDPASGTGGF 230

Query: 220 LTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           L +A NH+          K        G E +   + +C   +L+  L+       +  I
Sbjct: 231 LVEAYNHLEKQVKTVADRKRLQNDTISGCEPKSLPYLLCQMNLLLHGLD-------APQI 283

Query: 277 QQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             G+ L     ++   +R    L+NPPFG + EK       E +              ++
Sbjct: 284 DPGNALRFKLSEIGEKERVDVILTNPPFGGEEEKGIQGNFPEDRQ------------TAE 331

Query: 334 GSMLFLMHLANKLELPPNGGG---RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            ++LFL  +  KL+  P   G   RAA+V+    L +         IR  LL +  I AI
Sbjct: 332 TALLFLQLIMRKLKRQPTLAGRPARAAVVVPHGSLSSPGVA---KRIRETLLGDFNITAI 388

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           V LP ++F   T+I + +      +  +    +     +     +     K + +  +  
Sbjct: 389 VRLPHNVFAPYTDIQSNVIFFERGEPTQS---ILYCEPSL---PLGYSLSKTKPLLYEWM 442

Query: 450 RQILDIYVSRENGKFSRMLDYRTF-GYRRIKVLRPLR-MSFILDKTGLARLEADITWRKL 507
             +  +  SR+    S ++          + +  P R ++ + D+  L  L A +     
Sbjct: 443 EPLKKLIASRQETDTSWLVRRDDLDENLNLDIKNPRRKLNSLADRGDLETLSAQMRSYAD 502

Query: 508 SPLHQSFWLDILKPMMQQ 525
                   L  +  +++Q
Sbjct: 503 EADAIKAELAQVTELIRQ 520


>gi|332995832|gb|AEF05887.1| type I restriction-modification system methyltransferase subunit
           [Alteromonas sp. SN2]
          Length = 512

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 111/558 (19%), Positives = 190/558 (34%), Gaps = 86/558 (15%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRS-- 53
            +A  L   +  + + +       GD          LP       L+ L+  LE  R   
Sbjct: 2   TTAQQLGAIVKSSRQIMRKDKGLNGDLDR-------LPMLTWIMFLKFLDD-LEQMRETE 53

Query: 54  AVRE--KYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR--NNLES 102
           AV E   +     +      +  + G        +F N  E  +   G+        L S
Sbjct: 54  AVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAFINNDEA-MRPDGTRGIGLFAYLRS 112

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                  + + +     F     R+    LL  +    +GI     +     +S +YE +
Sbjct: 113 LQGDNGGDRRDVIATV-FKGMQNRMINGYLLRDVVDKINGIHF-NSSEEMHTLSRLYETM 170

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R         + +F TPR VV     ++           P +  ++ DP CGTGGFL +
Sbjct: 171 LREMRDAAG-DSGEFYTPRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVE 219

Query: 223 AMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           A  H+          ++       G E +   + +    +L+  LE          I   
Sbjct: 220 AFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-------PRIDPE 272

Query: 280 STLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           ++L   L       R    L+NPPFG            E + G LG F   + + ++ +M
Sbjct: 273 NSLRFPLREMGDKDRVDVILTNPPFG-----------GEEEKGILGNFPEDM-QTAETAM 320

Query: 337 LFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           LFL  +  KL+ P +G   GGRAA+V+ +  LF+       + I+  LL+N  +  IV L
Sbjct: 321 LFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS---ARIKEELLKNFNLHTIVRL 377

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P  +F   T+I   +         E     Q+          R +  K + +   +    
Sbjct: 378 PEGVFAPYTDIPANVLFFDRSAPTEDIWFYQIETPEG-----RKKYTKTKPMEYGEFSDC 432

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRR---IKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           L  + +R+    +  +              +   L          L  L       K+  
Sbjct: 433 LAWWGNRKVTNQAWTIKANDVLKYHDDGKLLDVNLDRKNPYSLEALEHLPPIQLIEKI-Q 491

Query: 510 LHQSFWLDILKPMMQQIY 527
             +   LD+LK M   + 
Sbjct: 492 GKELEILDLLKEMKAHLQ 509


>gi|149026371|ref|ZP_01836526.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP23-BS72]
 gi|147929333|gb|EDK80332.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae SP23-BS72]
          Length = 497

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 71/438 (16%), Positives = 151/438 (34%), Gaps = 62/438 (14%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEH 161
           +FS   +      +  +T+ +         I   F      ++   D      + +IYE+
Sbjct: 107 AFSRYMREAIFQINKPATLQKA------ISILDVFPTRGLDVDFDNDKQSITDIGDIYEY 160

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+ +  +        F TPR ++ +   L+      +            DP  G+ GFL 
Sbjct: 161 LLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLV 208

Query: 222 DAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
            A  ++            +       + HG + +     +    M++  +E       + 
Sbjct: 209 SASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NP 261

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I    +LS+D     ++   L+NPPF    + +  + +                K    
Sbjct: 262 QISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKKT 310

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LFL      L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P
Sbjct: 311 ELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMP 364

Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           + +F     ++T + I +         KV   +   +     +   KR+ I D+    I+
Sbjct: 365 SGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPIRDNDIPDII 420

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           + +   E     +  D   F    + V       + L       +E +    + + +   
Sbjct: 421 ERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILK 476

Query: 514 FWLDILKPMMQQIYPYGW 531
              D+ K +   +     
Sbjct: 477 KINDLEKEIQAGLAELEK 494


>gi|332975816|gb|EGK12695.1| type I restriction-modification system DNA-methyltransferase
           [Psychrobacter sp. 1501(2011)]
          Length = 491

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 168/497 (33%), Gaps = 58/497 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E       + I  +   +         +   L    +    
Sbjct: 33  LLFLKIFDA-----QEEALEFEQENYKTPIPEKYLWRNWAADPEGITGDELLDFVNDEIF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +        S     ++   LL ++    + ++ +       +  +
Sbjct: 88  VELKNLTAPVDTNPRGFVVRQGLSDAYNYMKNGTLLRQVINKLNEVDFNRSD-ERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE L+R   S  +  A +F TPR V       +           P +   + DP CGTG
Sbjct: 147 IYEQLLRDLQSAGN--AGEFYTPRAVTRFIVDRV----------DPKLGERIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV +     +           G E +   H +C   M++  +E         
Sbjct: 195 GFLACSFDHVKNNYVETAEDHQILQKQILGVEKKQLPHLLCTTNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K            ++NPPFG     ++  +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDSDIDVIVTNPPFGG---TEEHGIEKNFPAEFQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        +++++ L E   +  IV L
Sbjct: 300 ---LFLQLIIEVLAEK----GRAAVVLPDGTLFGEGVK---TKLKKMLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +    +        +        K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---DIWFYE--HPYPEGVKNYSKTKPMKFEEFQT 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D +    +G  SR+ +       ++ +   +  ++ LD +   + E            
Sbjct: 404 EIDWWGDESDGFASRVENNHA---WKVSIEEIIGRNYNLDISNPYQGEVIDYDPNKLLAD 460

Query: 512 QSFWLDILKPMMQQIYP 528
            +     +  +  Q+  
Sbjct: 461 YAKQQQSIDTLRSQLKD 477


>gi|225858683|ref|YP_002740193.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 70585]
 gi|225720662|gb|ACO16516.1| type I restriction modification enzyme methylase subunit
           [Streptococcus pneumoniae 70585]
          Length = 497

 Score =  180 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 92/559 (16%), Positives = 181/559 (32%), Gaps = 99/559 (17%)

Query: 5   TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   +  + +W+       A  L  + +   +         ++ L+             
Sbjct: 3   TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44

Query: 59  YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111
                G   D E         F  +  EY  ST    N  +  E Y      I  F  N 
Sbjct: 45  ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99

Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160
           K   +D  FS         I +         I   F      ++   D      + +IYE
Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +  +        F TPR ++ +   L+      +            DP  G+ GFL
Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFL 207

Query: 221 TDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             A  ++                    + HG + +     +    M++  +E       +
Sbjct: 208 VSASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------N 260

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             I    +LS+D     ++   L+NPPF    + +  + +                K   
Sbjct: 261 PQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKK 309

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL      L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++
Sbjct: 310 TELLFLSLFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISM 363

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P+ +F     ++T + I +         K+   +   +     +   KR+ I+D+    I
Sbjct: 364 PSGVFKPYAGVSTAILIFTKT-GNGGTDKIWFYD---MKADGLSLDDKRQPISDNDIPDI 419

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           ++ +   E     +  D   F    + V       + L       +E +    + + +  
Sbjct: 420 IERFHHLEKEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVIL 475

Query: 513 SFWLDILKPMMQQIYPYGW 531
               D+ K +   +     
Sbjct: 476 KKINDLEKEIQAGLAELEK 494


>gi|327480083|gb|AEA83393.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 488

 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 161/478 (33%), Gaps = 59/478 (12%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +      R    E       S
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-LLFLKIFDD-----RELEWELMDDNYRS 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            I      +         +  +L      N    L++ +  +S+   A      F     
Sbjct: 56  PIPESCRWRTWAADPEGMTGDALKDFIDNNLFPQLQN-LHEYSNTPAAFVVRSVFEDAYN 114

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            ++   LL ++                    N+YE L+R    + +  A +F TPR V  
Sbjct: 115 YMKSGQLLRQVINKIQQGVDFNKAQERHEFGNLYEQLLRDL--QNAGNAGEFYTPRPVTE 172

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVP 242
               ++           P +   + DP CGTGGFLT  + H        +  +       
Sbjct: 173 FMVRMV----------DPKLDEKVMDPACGTGGFLTCTIEHKRSRYVKTADDERTLQASI 222

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNP 299
           +G E +P  H +    M++  +E          I+  +TL++        +R    ++NP
Sbjct: 223 YGVEKKPLPHLLATTNMILHGIEV------PNQIRHDNTLARPLISWGPKERVDCIVANP 276

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG              ++G    F     +  + + LFL+ + + L+     GGRAA+V
Sbjct: 277 PFGGME-----------EDGIETNFPAAF-RTRETADLFLVLIMHLLKE----GGRAAVV 320

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417
           L    LF     S    I+  LL    +  IV LP  +F  + T I T L   +     +
Sbjct: 321 LPDGFLFGEGIKS---RIKEKLLTECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGTPTK 376

Query: 418 RRGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                  Q       ++  R    +   + +       D + +R   +F+  +     
Sbjct: 377 EVWFYEHQYPAGVKNYSKTRPMRIEEFAVEEAWWGSETDGFAARVENEFAWKVSLDEL 434


>gi|149177180|ref|ZP_01855786.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Planctomyces maris DSM 8797]
 gi|148843894|gb|EDL58251.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Planctomyces maris DSM 8797]
          Length = 489

 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 91/457 (19%), Positives = 163/457 (35%), Gaps = 72/457 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLG 92
             L+ L+  LE  R +V           +  E      +  +       + +  +   L 
Sbjct: 33  LFLKYLDD-LERERESVASLSGKAFEPILRPEYRWGIWAMPRKDDGEIDHHAALTGDDLL 91

Query: 93  STNTRNNLESYIASF--SDNAKAIFE-DFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147
                  L  Y+A F  S  +    E      FS    RL+    L ++      +    
Sbjct: 92  -DFVNQKLFPYLAKFKTSAESTDTIEYKIGEIFSELKNRLQSGYNLREVINLVDELRFQT 150

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             V    MS++YE  I+  G        ++ TPR ++     ++          +P +  
Sbjct: 151 S-VEKHEMSHLYESKIQNMG-NAGRNGGEYYTPRPLIRAIVKVI----------NPQIGE 198

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPILVPHGQELEPETHAVCVAG 258
           T+YD   G+ GFL +A + ++D              +I       G+E +     +    
Sbjct: 199 TIYDAAVGSAGFLVEAFDFLSDESNHGGKKLSHKDARILQQKTFTGKEKKSLAFIIGTMN 258

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +E       + N+   ++L++   D+    RF  CL+NPPFG K  K+       
Sbjct: 259 MILHGIE-------APNLIHTNSLTENLADIQEKDRFDICLANPPFGGKERKEVQQNFPI 311

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         K  + + LFL H    L+     GGRA IV+ ++ L N    S   
Sbjct: 312 --------------KTGETAFLFLQHFIKLLK----AGGRAGIVIKNTFLSNSDNAS--V 351

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LLE+  +  I+ LP   F    + T +      K   +    QL          R
Sbjct: 352 SLRKQLLESCDLHTILDLPGGTFTGAGVKTVVLFFEKGKATRKIWYYQL-------NPGR 404

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           N G K   +N+    + + +   ++    S  ++ + 
Sbjct: 405 NLG-KTNPLNEADLAEFVKLQPKKKESDNSWTVNIKD 440


>gi|227114146|ref|ZP_03827802.1| subunit M of type I restriction-modification system [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 490

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 93/495 (18%), Positives = 175/495 (35%), Gaps = 58/495 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +     T+    E         I      +    +    +  +L    + +  
Sbjct: 33  LLFLKIFD-----TQEEELELEQDDYQFPIPQRYLWRSWAANSEGITGEALLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++       N +       FS     ++   LL ++    + I+    +    +  +
Sbjct: 88  PTLKNLTTPIDKNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       +           P +  ++ DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  A +HV +     +          +G E +   H +C   ML+  +E         
Sbjct: 195 GFLACAFDHVKEHYVNTTEDHKTLQKQIYGVEKKQLPHLLCTTNMLLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIRHDNTLNKPLSSWDEQLDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLVIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEACNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K + +  ++ + 
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---QVWFYE--HPYPDGVKNYSKTKPMKFEEFQT 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + S  +G  SR          ++ +   +  +F LD     + E            
Sbjct: 404 EIDWWGSEADGFASRE---ENHQTWKVSIDEIIARNFNLDIKNPYQGEIISHDPDELLAQ 460

Query: 512 QSFWLDILKPMMQQI 526
               L  ++ +  Q+
Sbjct: 461 YQTHLAEIRELRNQL 475


>gi|296535589|ref|ZP_06897770.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
 gi|296264105|gb|EFH10549.1| site-specific DNA-methyltransferase (adenine-specific) [Roseomonas
           cervicalis ATCC 49957]
          Length = 483

 Score =  180 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 90/489 (18%), Positives = 161/489 (32%), Gaps = 70/489 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
            + +   L   +W  A  +        D+ + +     L+     L+  R    +   + 
Sbjct: 1   MSDTENVLTAKVWNLAHVMNNAGVGSGDYVEQVTYLLFLK-----LDTEREE--DGLPSL 53

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                       ++G         +L TL     +  L   I               ++ 
Sbjct: 54  LPEECRWARLAALSGRELAQHYARTLETLAG---QPGLVGTI---------------YTR 95

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               +E+   L+++ +               V   IYE L+ R  S+   GA  + TPR 
Sbjct: 96  ARNTIEEPAHLHRLVRMIGAENW--SGFGVDVKGAIYESLLERTASDTKSGAGQYFTPRP 153

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV- 241
           V+     ++           P   +T+ DP CGT GFL  A  H+               
Sbjct: 154 VIQACVEVV----------DPRPGQTICDPACGTAGFLLAAFEHMRQKPEARDRETGRRM 203

Query: 242 ----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G ++      +    + +  L     R     I +   L  D   G+R+   L+
Sbjct: 204 REEGFTGYDIVAGVARLAAMNLYLHGL----GRADVTPIHRADALLAD--PGRRWDVILT 257

Query: 298 NPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           NPPFG  +  +      E E +  +  R    +    +  + F+ H+   L      GG 
Sbjct: 258 NPPFGRRQSIQVFTGDGEAETEREDYQRPDFNVT-TGNKQLNFVQHIMTVLAP----GGV 312

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           AA+VL  + LF G AG    +IRR LL+      ++ LPT +F+R  +   +        
Sbjct: 313 AAVVLPDNVLFEGGAG---EKIRRRLLDEFECHTLLRLPTGIFYRQGVKANVLFF----E 365

Query: 416 EERRGKVQLINATDLW--TSIRNEGKKRRIINDDQRRQILDIYV-----SRENGKFSRML 468
              R K     A  ++   + +    K R + D    + + +        R+  +  +  
Sbjct: 366 ARPRRKTPWTEALWVYDLRTNKRFTLKERPLRDADMAEFVSLAKLSDRAKRQETERFKRF 425

Query: 469 DYRTFGYRR 477
            Y     R 
Sbjct: 426 TYAELAARE 434


>gi|323494429|ref|ZP_08099538.1| type I restriction-modification system methyltransferase subunit
           [Vibrio brasiliensis LMG 20546]
 gi|323311359|gb|EGA64514.1| type I restriction-modification system methyltransferase subunit
           [Vibrio brasiliensis LMG 20546]
          Length = 520

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 183/513 (35%), Gaps = 92/513 (17%)

Query: 1   MTEFTG-----SAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLE 45
           MT+        +A  L + +    + +       GD          LP       L+ L+
Sbjct: 1   MTKKKTEKPMTTAQQLGSIVKSARQIMRKDKGLNGDLDR-------LPVLTWVMFLKFLD 53

Query: 46  CA--LEPTRSAVR-EKYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTN 95
               L  T++ V  + +     +      +    G        SF N    + ST+    
Sbjct: 54  DLENLRETKALVEGKDFKPAIDAPYRWRDWAAKEGSITGDELISFVN----NDSTVRPDG 109

Query: 96  TRNN-LESYIASFSD-----NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           T    L +Y+          + + +     FS    R+    LL  +    +GI     +
Sbjct: 110 TEGAGLFAYLKELQGENGKMDRRDVIATV-FSGLHNRMLNGYLLRDVIDKVNGIHF-NSS 167

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +S +YE ++R         + +F TPR VV     +            P +  ++
Sbjct: 168 EEMHTLSRLYETMLREMRDAAG-DSGEFYTPRPVVRFMVEV----------TKPKLGESV 216

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFL +A++++       +           G E +P  + +    +L+  LE 
Sbjct: 217 LDPACGTGGFLVEALSYLEGQCETVEDRAMLQGSSIFGGEPKPLPYLLVQMNLLLHGLEY 276

Query: 267 DPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    I  G++L   L       R    L+NPPFG            E + G LG 
Sbjct: 277 -------PQIDSGNSLRFPLREMGDKDRVDVILTNPPFG-----------GEEEKGILGN 318

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           F   + + ++ ++LFL  +  KL+ P  G   GGRAA+V+ +  LF    G   + I+  
Sbjct: 319 FPDDM-QTAETALLFLQLIMRKLKRPGQGSDAGGRAAVVVPNGTLFCDGVG---ARIKEE 374

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LL+N  +  IV LP  +F   T+I   L         +     ++          R +  
Sbjct: 375 LLKNFNLHTIVRLPEGVFSPYTDIPANLLFFDRSGPTKDIWYYEVSTPEG-----RRKYT 429

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K   ++  +    LD + SR     +  +    
Sbjct: 430 KTNPLDYSEFSDCLDWWHSRTENGCAWKVSSSD 462


>gi|254507574|ref|ZP_05119707.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio
           parahaemolyticus 16]
 gi|219549461|gb|EED26453.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Vibrio
           parahaemolyticus 16]
          Length = 496

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 179/496 (36%), Gaps = 58/496 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L      I  +   +         +   L    + +  
Sbjct: 33  LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+   D+    +  +
Sbjct: 88  PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       L           P +   + DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV +     +          HG E +   H +C+  M++  +E         
Sbjct: 195 GFLACSFDHVKENYVTSTADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K         +   +NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L+      GRA +VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLDKD----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K + +  ++ +Q
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+   +     ++ +   +  +F LD     + E      +    +
Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQGEVISHDPEELLAN 460

Query: 512 QSFWLDILKPMMQQIY 527
                  +K +  Q+ 
Sbjct: 461 YQQQQQDIKALRDQLK 476


>gi|295697501|ref|YP_003590739.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
 gi|295413103|gb|ADG07595.1| N-6 DNA methylase [Bacillus tusciae DSM 2912]
          Length = 502

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 101/470 (21%), Positives = 168/470 (35%), Gaps = 71/470 (15%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVR 56
            +  SLAN IW+  + L       G  +       I  L     LR L+   E      +
Sbjct: 5   QTRESLANEIWRACDILRRDNNCGGVME------YIEHLAWLLFLRFLDAQEEEW--ETQ 56

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIF 115
            K      + I        A    + T ++    L        L  Y+ S   +  +   
Sbjct: 57  AKLAGRPYTRILDGDLRWSA----WATKDWPADRLL-EFVHGRLIPYLQSLGGDPLRETI 111

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                   +        L  +    +GI+ H        +S +YE L+RR GSE +  A 
Sbjct: 112 RSVFAERNVIVCASGYNLKDVLTIINGIDFH-SQDDIFTVSQVYEELLRRLGSE-NRLAG 169

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---ADCGS 232
           +F TPR VV     L+          +P +  T+YDP CGT GFL  A   +        
Sbjct: 170 EFYTPRPVVRFMVELV----------APQIGETVYDPACGTCGFLAQAYLFMIKSERTLE 219

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKR 291
            HK        GQE +P    + +  M++  +        +  + + +TL ++     +R
Sbjct: 220 DHKTLQEKTFFGQEKKPLPALLGLMNMVLHGV-------TAPRVMRRNTLEENIRNVTER 272

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPFG    +   A            F           +LFL H+  KL+    
Sbjct: 273 YDVVLTNPPFGGTEGRHIQAN-----------FPVQATAT---ELLFLQHIMKKLKP--R 316

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            G R  +V+    LF G A    ++++R LLE   +  +V+LP   F   +++ T L   
Sbjct: 317 DGARCGMVVPEGTLFRGGA---FADVKRVLLEQFNLHTVVSLPPGTFAPYSDVKTALLFF 373

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                       +L     L   ++    K   I D+   +   ++ + +
Sbjct: 374 ERPGPTTDIWYYEL----PLPEGLKKF-SKGSPIQDEHFEEARRLWKAWD 418


>gi|300087442|ref|YP_003757964.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527175|gb|ADJ25643.1| N-6 DNA methylase [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 484

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 160/450 (35%), Gaps = 67/450 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV------KVAGYSFYNTSEYSLSTL 91
              L+ L   LE  R A++ +   +    I  E +          G    + ++      
Sbjct: 32  LLFLKYL-QGLEEER-ALQAELGGWKYKCILDEPYRWNSWAAPKNGNGKIDHNKAKTGDD 89

Query: 92  GSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELH 146
                   L  Y+ SF   A     I       F     ++     + +I  +   +   
Sbjct: 90  LVEFVNTKLFPYLQSFKQTATGPDTIEYKIGEIFGEIKNKITSGYNMREIIDHVDELRFR 149

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   +S++YE  I+  G        ++ TPR ++     ++          +P + 
Sbjct: 150 -SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRSIIKVV----------NPQIG 197

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
            T+YD  CG+ GFL ++ +++                   +G+E +   + + +  M++ 
Sbjct: 198 ETIYDGACGSAGFLCESFDYLKASNTLTTRDMDTLQKSTFYGKEKKSLAYVIAIMNMILH 257

Query: 263 RLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            +E       + NI   +TL++   D+    R+   ++NPPFG K  K+           
Sbjct: 258 GIE-------APNILHTNTLTENLADIQEKDRYDIIMANPPFGGKERKEIQQNFPI---- 306

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                     +  + + LFL H    L+     GGRA IV+ ++ L N    S    +R+
Sbjct: 307 ----------RTGETAFLFLQHFIKMLK----AGGRAGIVIKNTFLSNSDNAS--VSLRK 350

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            L+E+  +  I+  P   F    + T +          +    QL          RN G 
Sbjct: 351 LLMESCNLHTILDCPGGTFLGAGVKTVVLFFEKGAPTRKTWYYQL-------DPGRNLG- 402

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           K   +ND+   + +++  +  +   S  ++
Sbjct: 403 KTNPLNDNDLAEFVELQKTFADSPKSWSVE 432


>gi|254303653|ref|ZP_04971011.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323845|gb|EDK89095.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 498

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 192/500 (38%), Gaps = 57/500 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+   E  +   ++    FG ++             + N  +           R
Sbjct: 35  LIFMKRLDQE-EQRKEKEKQLASIFGNTDEKFIFDENHQDIRWSNLIQLGDPKQLYDKVR 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156
           N    +I +  D+ ++IF  +   + I ++    +L         I  +P  V D     
Sbjct: 94  NEAFEFIKNLDDDKESIFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP CGT
Sbjct: 153 DLYEYLLSKLATSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200

Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            GFL  ++ ++               K     + HG + +     +    +L+  ++   
Sbjct: 201 SGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +  +++  +LS D      +   L+NPPF       K +V++   +  L R    +
Sbjct: 258 ----TPKLKRIDSLSTDYSEENDYTLILANPPF-------KGSVDESLLSNTLTR----V 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LF+      L+     GGR A+++    LF   A +    +R+ L+EN+ +E
Sbjct: 303 VKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQLE 356

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A++++P+ +F     ++T + I +          V   + T       +   KR  + ++
Sbjct: 357 AVISMPSGVFKPYAGVSTGILIFTKT-GNGGTDNVWFYDMTADGY---SLDDKRNSVEEN 412

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF----ILDKTGLARLEADIT 503
               I++ + + +N K  +  D   F  ++  V     +S      +    +   E ++ 
Sbjct: 413 DIPDIIERFSNLKNEKDRKRTDKSFFVSKQEIVDNDYDLSINKYKEIVYEKVEYEEPEVI 472

Query: 504 WRKLSPLHQSFWLDILKPMM 523
            +KL  L +S   + LK + 
Sbjct: 473 LQKLEELSKS-IDENLKELK 491


>gi|89076110|ref|ZP_01162469.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp.
           SKA34]
 gi|89048186|gb|EAR53769.1| Type I restriction enzyme EcoEI M protein [Photobacterium sp.
           SKA34]
          Length = 497

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 170/462 (36%), Gaps = 56/462 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L    S I  +   +         +  +L    + +  
Sbjct: 33  LLFLKVFDA-----QEEELELELDDYKSPIPEQYLWRNWAQDGEGITGEALLEFVNDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+   D+    +  +
Sbjct: 88  YKLKNLTAPVDLNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSSERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +    +F TPR V       L           P +   + DP  GTG
Sbjct: 147 IYEQILKDLQSAGNS--GEFYTPRAVTRFIINRL----------DPKLGEAIMDPATGTG 194

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV D                HG E +   H +C+  M++  +E         
Sbjct: 195 GFLACSFDHVKDNYVKTAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K         +   +NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIKHGNTLNKPLSSWDSNINVIATNPPFGGT---EEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
              LFL  +   L+       GGRA +VL    LF        ++I++ L E   +  IV
Sbjct: 300 ---LFLQLIIEVLDEGSETQNGGRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIV 353

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            LP  +F  + T I T +   +  K  +    V        +        K + +  ++ 
Sbjct: 354 RLPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPEGVKNYSKTKPMKFEEF 407

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           +Q +D + + E+G  SR+ +       ++ +   +  +F LD
Sbjct: 408 QQEIDWWGNEEDGFASRVENNHA---WKVPIADIIERNFNLD 446


>gi|262375870|ref|ZP_06069101.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145]
 gi|262308964|gb|EEY90096.1| type I restriction enzyme M protein [Acinetobacter lwoffii SH145]
          Length = 498

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/515 (15%), Positives = 168/515 (32%), Gaps = 84/515 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+         + ++  A        +                  S   +    
Sbjct: 40  LLFIRRLDEI------QITKEKKANRLKTAVEKPIFTPEQ------DHLRWSKFITLGDP 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-------LLYKICKNFSGIELHPDTV 150
             L   IA+            D ++    ++ A        LL K+    + + +     
Sbjct: 88  TQLYDTIANEVFPFIKSIGSEDDTTYSHHMKDARFTIPTPALLTKVVDLLAEVPMD---- 143

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 +IYE+++ +     +     F TPR ++ +   L+           P    T+ 
Sbjct: 144 DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------QPKPTDTIC 191

Query: 211 DPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           DP CGT GFL  A  ++ +             K        G + +     +    M++ 
Sbjct: 192 DPACGTAGFLVAASEYLNEHHSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMMLH 251

Query: 263 RLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            +E       +  I+   +LS+       +F   L+NPPF    + +  A   +      
Sbjct: 252 GVE-------NPRIENRDSLSEAHSHIESQFSLILANPPFAGSLDYESCAKNIQA----- 299

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                 + K     +LFL      L+     GGRAAI++    LF   +     ++R+ +
Sbjct: 300 ------IVKTKKTELLFLALFLRILKT----GGRAAIIVPDGVLF--GSSKAHKDLRQKI 347

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +E   +EAI+++P+ +F     ++T + I +         KV   +         +   K
Sbjct: 348 VEEQKLEAIISMPSGVFKPYAGVSTAILIFTKT-ETGGTDKVWFYDMQADGY---SLDDK 403

Query: 441 RRIIN-----DDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
           R  ++     ++    I+  +        R+  + S ++D          +        +
Sbjct: 404 RNELDTSKHENNNIPDIIARFKNLEAESDRKATEQSFLVDKADIAANGYDLSINRYKEVV 463

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            ++         +   +L        ++ LK M++
Sbjct: 464 YEQVEYEAPSKILADLELLEQEILKGMNELKEMLK 498


>gi|320155757|ref|YP_004188136.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio vulnificus MO6-24/O]
 gi|319931069|gb|ADV85933.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio vulnificus MO6-24/O]
          Length = 496

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 179/496 (36%), Gaps = 58/496 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L      I  +   +         +   L    + +  
Sbjct: 33  LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+   D+    +  +
Sbjct: 88  PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       L           P +   + DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194

Query: 218 GFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV +     +          HG E +   H +C+  M++  +E         
Sbjct: 195 GFLACSFDHVKENYVTNASDHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K         +   +NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L+      GRA +VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLDKD----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K + +  ++ +Q
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+   +     ++ +   +  +F LD     + E      +    +
Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQDEVVSHDPEELLAN 460

Query: 512 QSFWLDILKPMMQQIY 527
                  +K +  Q+ 
Sbjct: 461 YQQQQQDIKALRDQLK 476


>gi|282907753|ref|ZP_06315595.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282328658|gb|EFB58929.1| type I restriction-modification system methyltransferase subunit
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 237

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 25/234 (10%)

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  F  
Sbjct: 10  KEAKVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDA 64

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L+      G
Sbjct: 65  VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 115

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
             A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +
Sbjct: 116 TMAVVLPHGVLFRGAA---EGIIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--K 170

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSR 466
           K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E   K+S 
Sbjct: 171 KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSY 220


>gi|148264152|ref|YP_001230858.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146397652|gb|ABQ26285.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 506

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 158/464 (34%), Gaps = 87/464 (18%)

Query: 13  NFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECAL--EPTRSAVREKYLAFGG 64
           + IW        ++ L    +   +         ++RL+     +  ++    K +    
Sbjct: 11  DKIWDAFWTGGISDSLR-VIEQMSY------LLFIKRLDDLHTAKEKKANRLGKPIEEPI 63

Query: 65  SNIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
                +           AG  F   S+     + + +         ++++ + K      
Sbjct: 64  FGPKQDHLRWSRFREFEAGEMFRVVSQEVFPFIKNLHGNEE-----SAYARHMKD----- 113

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                I  +    LL ++ +  S + +           ++YE+++ +  +        F 
Sbjct: 114 ----AIFMIPTPSLLERVVEQISQVPME----DRDTKGDLYEYMLSKLTTAG--RNGQFR 163

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKI 236
           TPR ++ +   L+           P     + DP CGT GFL  A  ++ +      H  
Sbjct: 164 TPRHIIKMMVELM----------QPRPDDIICDPACGTAGFLVAAGEYLREHHGDLFHNE 213

Query: 237 PPILVPHGQELEP-----ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                 + +             +    M++  +E       +  I+   +LS        
Sbjct: 214 KLKKHFNEKLFNGFDFDSTMLRIASMNMMLHGVE-------NPAIEARDSLSSAADIADA 266

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF  K   D+D V K+              K     +LF+  +   L+    
Sbjct: 267 YTLILANPPF--KGSLDEDTVAKDLLR---------TVKTKKTELLFIALMLRLLKP--- 312

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A+++    LF   +     ++R+ L++   +EA++++P+ +F     ++T + I 
Sbjct: 313 -GGRCAVIVPDGVLF--GSSKAHLDLRKILVDGHKLEAMISMPSGVFRPYAGVSTGILIF 369

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +   +      V   +   +     +   KR  +  +    +++
Sbjct: 370 TKTNSG-GTDHVWFYD---MQADGFSLDDKRNPVEQNDIPDVVE 409


>gi|167768049|ref|ZP_02440102.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1]
 gi|167710378|gb|EDS20957.1| hypothetical protein CLOSS21_02593 [Clostridium sp. SS2/1]
 gi|291561046|emb|CBL39846.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 488

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 162/434 (37%), Gaps = 69/434 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+     TR              I  E     A    Y  S++    LG  N  
Sbjct: 35  LLFIKQLDEV--ETRKE-----RDANILGIPYEGIF-PADCQQYRWSKF--KNLGDANEI 84

Query: 98  NNLE-----SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
            +L       +I S   + ++ +  +     I ++    LL K+     G+ L       
Sbjct: 85  YDLMMNGVFPFIKSLHPDGESAYSKY-MGDAIFKIPTPALLTKVIDGIDGLNL-----EG 138

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+L+ +   E +     F TPR ++ +   L+           P     + DP
Sbjct: 139 DSKGDLYEYLLSKL--ESAGKNGQFRTPRHIIQMMVELV----------KPVPSDIICDP 186

Query: 213 TCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             G+ GFL  A  ++              +     + +G +++     +    ML+  ++
Sbjct: 187 AMGSAGFLMAAQQYLRKNHKDLFLNAEQREHFNHEMFYGFDMDRTMLRIGAMNMLLHGVD 246

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                    NI+   +LS+     +++   L+NPPF  K   D D V  +          
Sbjct: 247 -------DPNIEYKDSLSEMNTDKEKYSLILANPPF--KGSLDYDGVSADLLK------- 290

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K     +LFL+     ++     GGRAA+++    LF   +      IR+ L+EN 
Sbjct: 291 --VAKTKKTELLFLVLFLRIMK----IGGRAAVIVPDGVLF--GSSRAHKAIRKELIENH 342

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++A++++P+ +F     ++T + + +         KV   +   +    R    KR+ I
Sbjct: 343 KLDAVISMPSGVFKPYAGVSTAILLFTKT-GAGGTDKVWFYD---MKADGRTLDDKRQEI 398

Query: 445 NDDQRRQILDIYVS 458
            ++    I++ Y +
Sbjct: 399 EENDIPDIIERYQN 412


>gi|261868701|ref|YP_003256623.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261414033|gb|ACX83404.1| type I modification enzyme [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 360

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 108/352 (30%), Gaps = 72/352 (20%)

Query: 35  ILPFTLLRRLECALEPTRSAVR--------------------EKYLAFGGSNIDLESFVK 74
           +L    L+ +  +    +  +R                    E+Y       ++   +  
Sbjct: 1   MLGLIFLKYISDSFTAQQDKIRVELSNPENPLYLDRTFYNSDEEYQEALDFELENRDYY- 59

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYI---ASFSDNAKAIFEDFD-FSSTIARLE-- 128
            A   F+  +      L   +   N  + +     F   A+ I + FD       +L+  
Sbjct: 60  TADNVFWVPASARWQALQEVSIL-NTGAELPWGGKFVGVARLIDDAFDAIEKDNEKLKGV 118

Query: 129 ---------KAGLLYKICKNFSGIELHPDTVP--------DRVMSNIYEHLIRRFGSEVS 171
                        L  +   FS       +            ++ ++YE+ + RF     
Sbjct: 119 LQRISGYAVNEDTLRGLIMLFSDTNFTAPSYNGEPVHLGAKDILGHVYEYFLGRFAQAEG 178

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    + TP+ +V L   +L                 +YDP  G+GGF       +    
Sbjct: 179 KRGGQYFTPKSIVSLIVEML-----------EPYKGRVYDPAIGSGGFFVQTERFITAHQ 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +         +GQE  P T  +    M IR ++ D  +  +       + ++     K+
Sbjct: 228 GNIN---QASIYGQEFNPTTWKLAAMNMAIRGIDYDFGKHNA------DSFAQPQHLDKK 278

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             + ++NPPF                  +  R+  G P   + +  +L H+ 
Sbjct: 279 MDFIMANPPFNIS-------DWWSESLADDPRWAYGTPPKGNANFAWLQHMI 323


>gi|291615456|ref|YP_003522564.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
 gi|291582518|gb|ADE16974.1| N-6 DNA methylase [Nitrosococcus halophilus Nc4]
          Length = 486

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 173/507 (34%), Gaps = 78/507 (15%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I      +RL+         VRE+     G  I+   F                S     
Sbjct: 32  ITYLLFTKRLDELH-----TVRERKANRLGKPIEDPIFSAKQQ-------PLRWSRFKDR 79

Query: 95  NTRNNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPD 148
                 E +        K + E  +          +  +    LL ++      + +   
Sbjct: 80  EAGEMYELFRDEVFPFIKKLHEGRESAYSRFMKDAVFVIPTPNLLQRVVTMLEALPME-- 137

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   ++YE+++ +  +        F TPR ++ +   L+          +P    T
Sbjct: 138 --DRDTKGDLYEYMLSKIATAG--QNGQFRTPRHIIKMMVELV----------APTPQDT 183

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP CGT GFL  A  ++ +            +     + HG + +     +    M +
Sbjct: 184 IADPACGTCGFLVAAGEYLREHHPDIFHDAALRQHFNHGLFHGTDFDSSMLRIGAMNMTL 243

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E         +I+   +LS++      R+   L+NPPF       K +++ E    +
Sbjct: 244 HGVE-------DPDIRGLDSLSQEGTGIRDRYTVILANPPF-------KGSLDYESVAKD 289

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           L R    L       +LFL     +L+     GGR A ++    LF   +     EIRR 
Sbjct: 290 LLR----LTSTKKTELLFLALFLCQLK----AGGRCACIVPDGVLF--GSSKAHREIRRH 339

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEG 438
           L+E+  ++ ++++P+ +F     ++T + I +   +     +V   + A D +    +  
Sbjct: 340 LVEDHKLDGVISMPSGVFKPYAGVSTAILIFTRTDSG-GTDQVWFYDMAADGF----SLD 394

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            KR  + ++    IL  +  R   K +       F    +         + L       +
Sbjct: 395 DKREPVKENDIPDILAKWKKRNPKKDTDRTAKAFF----VPKAEIAENKYDLSINRYKEV 450

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQ 525
           + +       PL     L+ L+  +QQ
Sbjct: 451 QYE-AVEYEPPLVILDQLEALETEIQQ 476


>gi|28897162|ref|NP_796767.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260361456|ref|ZP_05774515.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus K5030]
 gi|260878069|ref|ZP_05890424.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260896964|ref|ZP_05905460.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|28805371|dbj|BAC58651.1| type I restriction enzyme M protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088725|gb|EFO38420.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308090051|gb|EFO39746.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308111003|gb|EFO48543.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus K5030]
          Length = 496

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 178/496 (35%), Gaps = 58/496 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L      I  +   +         +   L    + +  
Sbjct: 33  LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+   D+    +  +
Sbjct: 88  PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       L           P +   + DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV +     +          HG E +   H +C+  M++  +E         
Sbjct: 195 GFLACSFDHVKENYVTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K         +   +NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIKHGNTLNKPLSNWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L+      GRA +VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLDKD----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K + +  ++ +Q
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR     T    ++ +   +  +F LD     + E      +    +
Sbjct: 404 EIDWWGNEADGFASR---TETKQAWKVSIEDIIERNFNLDIKNPYQDEVVSHDPEELLAN 460

Query: 512 QSFWLDILKPMMQQIY 527
                  +K +  Q+ 
Sbjct: 461 YQQQQQDIKALRDQLK 476


>gi|194396843|ref|YP_002037523.1| type I restriction-modification system subunit M [Streptococcus
           pneumoniae G54]
 gi|194356510|gb|ACF54958.1| type I restriction-modification system, M subunit, putative
           [Streptococcus pneumoniae G54]
          Length = 497

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/551 (14%), Positives = 178/551 (32%), Gaps = 83/551 (15%)

Query: 5   TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   +  + +W+       A  L  + +   +         ++ L+            +
Sbjct: 3   TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV--ELGRESDAE 53

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS------FSDNAK 112
           +L      +  +   +    +F N  +        T         +        FS   +
Sbjct: 54  FLGIPYEGVFPKDKPEXRWSTFKNIGDAQEVYRLMTQEIFPFIKNLKGDTDDTAFSRYMR 113

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEHLIRRFGS 168
                 +  +T+ +         I   F      ++   D      + +IYE+L+ +  +
Sbjct: 114 EAIFQINKPATLQKA------ISILDVFPTRGLDVDFDNDKQSITDIGDIYEYLLSKLST 167

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                   F TPR ++ +   L+      +            DP  G+ GFL  A  ++ 
Sbjct: 168 AGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLVSASRYLK 215

Query: 229 DCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                      +       +  G + +     +    M++  +E       +  I    +
Sbjct: 216 RKKDEWETNTDNINHFHNQMFRGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLDS 268

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           LS+D     ++   L+NPPF    + +  + +                K     +LFL  
Sbjct: 269 LSQDNEEADKYTLVLANPPFKGSLDYNSTSNDL-----------LATVKTKKTELLFLSL 317

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
               L+     GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F   
Sbjct: 318 FLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPY 371

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             ++T + I +         KV   +   +     +   KR+ I+D+    I++ +   E
Sbjct: 372 AGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLE 427

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                +  D   F    + V       + L       +E +    + + +      D+ K
Sbjct: 428 KEAERQRTDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEK 483

Query: 521 PMMQQIYPYGW 531
            +   +     
Sbjct: 484 EIQAGLAELEK 494


>gi|315444136|ref|YP_004077015.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315262439|gb|ADT99180.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 477

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 155/465 (33%), Gaps = 81/465 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   + N +W     L       D+G  I   T L  +          + ++  A    +
Sbjct: 2   TTGDVVNKLWGFCHVLR--HDGIDYGDYIEQLTYLLFI---------KMADERGAELPQH 50

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
            D     K +G    +    +L TLG  +                  I  D  FS +  R
Sbjct: 51  TDWPYLRKQSGSDLLDAYVEALRTLGKEH-----------------GILGDI-FSGSQNR 92

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L K+       E     +   V +  +E L+ +  SE  +GA  + TPR ++  
Sbjct: 93  FSNPVNLQKLIGLIDQTEWT--AIDTDVKAAAFEGLLEKAASEGKKGAGQYFTPRILIQS 150

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPI 239
               +                 + DP  GTGGFL  A   +              K    
Sbjct: 151 MVRCVKP------DPRASKDFKVCDPAVGTGGFLIAAYEWLKAETKGGAFDRDTAKRIRR 204

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +G EL P    + +  + + ++E          I  G ++ + +   +R+   L NP
Sbjct: 205 QTYYGNELVPRPRRLALMNLYLHQVE--------PRITLGDSIYE-VPGSQRYDVILMNP 255

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG K        E          F       S+  + FL H+   L+     GGRAA+V
Sbjct: 256 PFGTKGAGQPPDRED---------FVVQT---SNKQLNFLQHVLTTLKK----GGRAAVV 299

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417
           +  + LF  +A     E+ + L+E+  +  ++  P   F  +     T +   +  +  E
Sbjct: 300 VPDNVLFAQQA----GEVFQVLMEDCDLHTVLRCPRGTFSPYTEGTKTNVIFFTKGRPTE 355

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
                 + +A     ++    KK R ++     +    Y    NG
Sbjct: 356 HTW---IYDARS---NVPKITKKSRPLSPRHFAEFEKCYGDDPNG 394


>gi|261416114|ref|YP_003249797.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372570|gb|ACX75315.1| Site-specific DNA-methyltransferase (adenine-specific) [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327814|gb|ADL27015.1| putative type I restriction-modification system, M subunit
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 481

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 170/504 (33%), Gaps = 77/504 (15%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L+              E Y           ++         N        L   +
Sbjct: 33  LFLKYLDNLEAEREEEAELKGETYERIIDKKFRWNTWAAPKTK---NGEPDHAKALTGDD 89

Query: 96  ----TRNNLESYIASFSDNA---KAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELH 146
                 N L  Y+  F + A   +++       F     ++     L +I   ++     
Sbjct: 90  LTDFVNNKLFPYLKKFKETATTPQSLEYKIGEIFGELRNKITSGYNLREIL-WYADALSF 148

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
             +     MS++YE  IRR G        ++ TPR ++     ++           P + 
Sbjct: 149 QSSEDKHEMSHLYEDKIRRMG-NAGRNGGEYYTPRPLIRTIVRII----------DPKIG 197

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            T+ DP CG+ GFL +A  ++          +       +GQE +   + + +  M++  
Sbjct: 198 ETVLDPACGSAGFLCEAYAYMKQKVKSVADRETLQKKTFYGQEKKGLAYIIGIMNMILHG 257

Query: 264 LESDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +        + NI   +TLS+++       R    ++NPPFG K   +            
Sbjct: 258 VN-------APNILHTNTLSENMANVEQKMRKDVIIANPPFGGKERAEVQQNFPI----- 305

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K S+ + LF+ +    L+     GGRA IV+ ++ L N    S    +R+ 
Sbjct: 306 ---------KTSETAYLFMQYFVKLLK----AGGRAGIVIKNTFLSNTDNASVM--LRKE 350

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLEN  +  I+ LP+ +F    + T +      +  E+    Q           RN G K
Sbjct: 351 LLENCDLHTILDLPSGVFTGAGVKTVVLFFEKGRPTEKIWYYQP-------DFGRNLG-K 402

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARL 498
              + +D   + + +   + + + S  ++ +        + V  P       +K     L
Sbjct: 403 TNPLTEDDLAEFVKLQKKKTDSEKSWTINVKDLNPETYDLSVKNP-------NKKTEVEL 455

Query: 499 EADITWRKLSPLHQSFWLDILKPM 522
               T  K           IL  +
Sbjct: 456 RDAKTIIKEMQSLDEENRKILAKL 479


>gi|166368435|ref|YP_001660708.1| type I restriction enzyme M protein [Microcystis aeruginosa
           NIES-843]
 gi|166090808|dbj|BAG05516.1| type I restriction enzyme M protein [Microcystis aeruginosa
           NIES-843]
          Length = 495

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/509 (16%), Positives = 173/509 (33%), Gaps = 69/509 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+  LE  +    ++      +     S   +    F N  +         +  
Sbjct: 35  LLFIKRLDD-LELAKERRAQRLGENLENPTFTPSQQHIRWSRFKNIDDAETMLQIVRDEA 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
                 +  FS   +           +  +    LL  + +    I +           +
Sbjct: 94  FPFIKDMGQFS---RGSTYAKHMKDAVFLIASPALLGTVIEQIEKIPME----DRDTKGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+++ +  +        F TPR ++ +   LL          +PG    + DP CGTG
Sbjct: 147 LYEYMLSKLSTAG--TNGQFRTPRHIIKMMVELL----------APGPREVICDPACGTG 194

Query: 218 GFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GFL  A  +V +              + +     + HG + +     +    +++  +E 
Sbjct: 195 GFLVAAAEYVRELKDSEGGRLLHERGNLEHFNNQMFHGFDFDATMLRIGSMNLMLHGIE- 253

Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                    I+   +LS+D       F   L+NPPF  K   +K  + K+          
Sbjct: 254 ------QPIIEARDSLSEDHAGVEDSFTMILANPPF--KGSVEKSTIAKDLSKIID---- 301

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 +   +LF+      L+     GG+ A+++    LF   +     +IR  L+E  
Sbjct: 302 -----TTKTELLFMALFLRLLKT----GGKGAVIVPDGVLF--GSSKAHKDIRTILVEEH 350

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            +E ++++P+ +F     ++T + I +     E+    V   +   +     +   KR+ 
Sbjct: 351 KLEGVISMPSGVFKPYAGVSTAILIFTKLGVREKGTDFVWFYD---MVADGFSLDDKRQP 407

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           I D+    +L  +  R++ K +       F    +        ++ L       +E +  
Sbjct: 408 IADNDIPDLLRCWQQRDSAKDTNRQGKAFF----VPREEIQANAYDLSINRYKEIEYE-- 461

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
             ++S       L  L+ +   I     A
Sbjct: 462 --EVSYEPPKVILQKLRALEADIRQDLDA 488


>gi|330937291|gb|EGH41302.1| Type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 313

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/325 (22%), Positives = 117/325 (36%), Gaps = 34/325 (10%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               +                L  +GQE   ET  +C+  + +  L+ +  +        
Sbjct: 1   MFVQSAKFKDAHAKQLGSKGDLPIYGQEKMAETRRLCLMNLAVHGLDGNIGQ------TY 54

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           GST + D     R  Y L+NPPF     + +       K     R+  G+P   + +  +
Sbjct: 55  GSTFTNDQHKTLRADYILANPPFNISDWEGE-------KLKGDPRWAHGIPPKGNANYAW 107

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L H+  +L       GRA +VL++  +      SGE  IR+ ++  D++E +VALP  LF
Sbjct: 108 LQHILARLSSR----GRAGVVLANGSMST--QQSGEDIIRQSMVIKDVVECMVALPGQLF 161

Query: 399 FRTNIATYLWILSNRKTEERRGK------VQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
             T I   LW LS  K     GK      +  I+A     +     +K+    +D    I
Sbjct: 162 SNTQIPACLWFLSKDKRIGPNGKTDRSSQILFIDARK--ATSGRISRKQVEFTEDDMEGI 219

Query: 453 LDIYVSRENGKFSR---MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
              Y    N  FS      D   F Y         +  FIL        E   +  +   
Sbjct: 220 AQTYHRWRNTVFSDGEGYEDIPGFCYSA-SFEDVQKHGFILTPGRYVGAE---SVEEDDQ 275

Query: 510 LHQSFWLDILKPMMQQIYPYGWAES 534
           L       +++ + +QI      E 
Sbjct: 276 LFSDKLNHLIEQLGEQIAERNAIEK 300


>gi|37678450|ref|NP_933059.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37197190|dbj|BAC93030.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 530

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 113/564 (20%), Positives = 197/564 (34%), Gaps = 86/564 (15%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFT----LLRRLECALEPTRS-- 53
            +A  L   +  + + +       GD          LP       L+ L+  LE  R   
Sbjct: 17  TTAQQLGAIVKSSRQIMRKDKGLNGDLDR-------LPMLTWIMFLKFLDD-LEQMRETE 68

Query: 54  AVRE--KYLAFGGSNIDLESFVKVAGY-------SFYNTSEYSLSTLGSTNTR--NNLES 102
           AV E   +     +      +  + G        +F N  E  +   G+        L S
Sbjct: 69  AVLEGKSFQPAIEAPYRWRDWAAIEGGITGDELIAFINNDEA-MRPDGTRGIGLFAYLRS 127

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                  + + +     F     R+    LL  +    +GI     +     +S +YE +
Sbjct: 128 LQGDNGGDRRDVIATV-FKGMQNRMINGYLLRDVVDKINGIHF-NSSEEMHTLSRLYETM 185

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R         + +F TPR VV     ++           P +  ++ DP CGTGGFL +
Sbjct: 186 LREMRDAAG-DSGEFYTPRPVVRFMVEVM----------DPQLGESVLDPACGTGGFLVE 234

Query: 223 AMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           A  H+          ++       G E +   + +    +L+  LE          I   
Sbjct: 235 AFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-------PRIDPE 287

Query: 280 STLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           ++L   L       R    L+NPPFG            E + G LG F   + + ++ +M
Sbjct: 288 NSLRFPLREMGDKDRVDVILTNPPFG-----------GEEEKGILGNFPEDM-QTAETAM 335

Query: 337 LFLMHLANKLELPPNG---GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           LFL  +  KL+ P +G   GGRAA+V+ +  LF+       + I+  LL+N  +  IV L
Sbjct: 336 LFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGIS---ARIKEELLKNFNLHTIVRL 392

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P  +F   T+IA  L         +     Q+          R +  K + +   +  + 
Sbjct: 393 PEGVFAPYTDIAGNLLFFDRSGPTDDIWYYQITVPEG-----RKKYTKTKPMESHEFDEC 447

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRR---IKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           L+ + +R   + +                 +   L          L   E      K++ 
Sbjct: 448 LNWWSNRIVNQNAWKESASEIIKYSESGQLIDVNLDRKNPNSLEVLEHEEPMDLIEKITT 507

Query: 510 LHQSFWLDILKPMMQQIYPYGWAE 533
             +S  L IL+ +  +I   G ++
Sbjct: 508 KEES-LLAILEQIKAEISTQGISK 530


>gi|154150574|ref|YP_001404192.1| N-6 DNA methylase [Candidatus Methanoregula boonei 6A8]
 gi|153999126|gb|ABS55549.1| N-6 DNA methylase [Methanoregula boonei 6A8]
          Length = 477

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 155/467 (33%), Gaps = 87/467 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64
            + +   +W     L       D+G  I        ++  +            +      
Sbjct: 1   MSDVVQKLWGFCHTLR--HDGIDYGDYIEQITYLLFIKMAD------------ERGVKLP 46

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              D ++ ++ +G +  +     L TLG                     +  D  F+  +
Sbjct: 47  EGCDWKTLMEKSGTNLSDHYVDVLRTLGQQP-----------------GLLGDI-FAGAL 88

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +R      L K+             V   V +  +E L+ +  SE  +GA  + TPR ++
Sbjct: 89  SRFTNPVNLKKLIGLIDETAWTELNVD--VKAEAFEGLLEKAASEGKKGAGQYFTPRILI 146

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIP 237
                 +                 + DP CGTGGFL  +   + +            K  
Sbjct: 147 QSIVRCMKP------DPRKKADFAICDPACGTGGFLVCSYEWLLEQTKGGALDRDVAKRV 200

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQEL      + +  + +  +E          I+ G ++ ++    +RF   L+
Sbjct: 201 LKDTYFGQELVARPRRLALMNLFLHNVEPV--------IKYGDSIYENP-DNRRFDVVLT 251

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K        +              +   S+  + F+ H+   L+     GGRAA
Sbjct: 252 NPPFGTKGANQAPDRDD------------FVVSTSNKQLNFVQHVMTILKP----GGRAA 295

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
           +V+  + LF  +A     E+ + L E+  +  I+ LP   F  +     T +   +    
Sbjct: 296 VVVPDNVLFADQA----GEVFKVLTEDCNLHTILRLPNGTFTPYSPGTKTNVLFFTKGFP 351

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            E       I   D  T++    KK R +  +   +   +Y +  NG
Sbjct: 352 TET------IWVYDDRTNVPGITKKDRPLTPEYFAEFEKVYGADPNG 392


>gi|148977936|ref|ZP_01814489.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium
           SWAT-3]
 gi|145962882|gb|EDK28154.1| Type I restriction enzyme EcoEI M protein [Vibrionales bacterium
           SWAT-3]
          Length = 496

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 174/467 (37%), Gaps = 71/467 (15%)

Query: 38  FTLLRRLEC-------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
              L+  +         L+  +S + E+YL +     D E     A   F N  +     
Sbjct: 33  LLFLKVFDAQEEELELELDDYKSPIPEQYL-WRNWAQDAEGITGEALLEFVN--DDLFYK 89

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L       NL + +     N +       FS     ++   LL ++    + I+   D+ 
Sbjct: 90  LK------NLTAPVDL---NPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSS 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  +IYE +++   S  +  A +F TPR V       L           P +  ++ 
Sbjct: 140 ERHLFGDIYEQILKDLQSAGN--AGEFYTPRAVTRFIVDRL----------DPKLGESIM 187

Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP  GTGGFL  + +HV D                HG E +   H +C+  M++  +E  
Sbjct: 188 DPATGTGGFLACSFDHVKDNYVKTAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV- 246

Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   I+ G+TL+K         +   +NPPFG     ++D +EK        R   
Sbjct: 247 -----PVQIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR--- 295

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                 + + LFL  +   L       GRA +VL    LF        ++I++ L E   
Sbjct: 296 ------ETADLFLQLIIEVL---DENNGRAGVVLPDGTLFGEGVK---TKIKKMLTEECN 343

Query: 387 IEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           +  IV LP  +F  + T I T +   +  K  +    V        +        K + +
Sbjct: 344 LHTIVRLPNGVFNPY-TGIKTNILFFTKGKPTK---DVWFYE--HPYPEGVKNYSKTKPM 397

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
             ++ +Q +D + + E+G  SR+ +       ++ +   +  +F LD
Sbjct: 398 KFEEFQQEIDWWGNEEDGFASRVENNHA---WKVPIADIIERNFNLD 441


>gi|209523415|ref|ZP_03271970.1| N-6 DNA methylase [Arthrospira maxima CS-328]
 gi|209496157|gb|EDZ96457.1| N-6 DNA methylase [Arthrospira maxima CS-328]
          Length = 507

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 170/470 (36%), Gaps = 81/470 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ L+  LE  R A+  + L      I  E++     +S++   +     +   +  
Sbjct: 32  LLFLKYLDD-LEEER-AMEAELLGKSYEFILDEAYR----WSYWAAPKLPSGDIDRNHAL 85

Query: 96  TRNNLESYIA--------SF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSG 142
           T ++L  Y+          F   + +A  I       F     + +    L +  +    
Sbjct: 86  TGDDLIEYVNNVLFPHLQGFKQRAASADTIEYKIGEIFGEIKNKFQSGYGLREALELVDE 145

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           ++          +S++YE  I+  G        ++ TPR ++     ++           
Sbjct: 146 LKFQTQK-EKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIRVV----------K 193

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           P +   +YD  CG+ GFL ++ +++          ++       G+E +   + + +  +
Sbjct: 194 PKIGDRIYDGACGSAGFLCESYDYLRQGKLTTQQLRLLQTGTLFGKEKKSLAYVIAIMNL 253

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           ++  ++       + NI   +TL++   D+    RF+  L+NPPFG    K+        
Sbjct: 254 ILHGID-------APNIIHTNTLAENLSDIQEKDRFNVVLANPPFGGNERKEVQQN---- 302

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                  F     K  + + LFL H    L++    GGRA IV+ ++ L N    S    
Sbjct: 303 -------FPV---KTGETAFLFLQHFIKILKV----GGRAGIVIKNTFLSNSDNAS--RA 346

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER-RGKVQLINATDLWTSI- 434
           +R+ LL +  +  I+  P   F    + T +         +  +G             + 
Sbjct: 347 LRQQLLSDCNLHTILDCPGGTFIGAGVKTVVLFFEKGNPSDSLQGMPLFSQGKSHAEGMA 406

Query: 435 ------------RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
                       RN G K   +ND+  ++ +++  +  +   S  +D   
Sbjct: 407 TRKIWYYQLDPGRNLG-KTNPLNDEDLQEFVELQATFADSDKSWSVDVAD 455


>gi|21228806|ref|NP_634728.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907325|gb|AAM32400.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 474

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/467 (18%), Positives = 156/467 (33%), Gaps = 87/467 (18%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVI---LPFTLLRRLECALEPTRSAVREKYLAFGG 64
            + +   +W     L    +  D+G  I        L+  +            +      
Sbjct: 1   MSDIVQKLWGFCHTLR--HEGIDYGDYIEQITYLLFLKMAD------------EREIKLP 46

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
              D +S  + +G         +L TLG                   + +  D  F+  +
Sbjct: 47  EACDWQSLKEKSGTELTEHYNDALRTLGKQ-----------------EELLGDI-FAGAL 88

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +R      L KI       E     +   V +  +E L+ +  SE  +GA  + TPR V+
Sbjct: 89  SRFHNPVSLKKIISLIDETEWT--GLDIDVKAMAFEGLLEKAASEGKKGAGQYFTPRIVI 146

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIP 237
                                  ++ DP CGTGGFL  A   +              K  
Sbjct: 147 QTIVRCTKPD------PRNHRDFSIMDPACGTGGFLVCAYEWLKAVTGGGALERDLAKKI 200

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 GQEL      + +  + +  +E +        I+ G ++ +     K+F   L+
Sbjct: 201 RYSTYFGQELVERPRRLALMNLYLHGIEPE--------IKLGDSIYEIP-ESKKFDVVLT 251

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K        E              + + S+  + F+ H+   L+     GGRAA
Sbjct: 252 NPPFGTKGANQAPVRED------------FVIETSNKQLNFIQHVMTILKP----GGRAA 295

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
           IV+  + LF  +A     E+ + L E+  +  ++ LP   F  +     T +   +    
Sbjct: 296 IVVPDNVLFADQA----GEVFKVLCEDCDLHTVLRLPDGTFTPYSPGTKTNVIFFTKGIP 351

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
            +R     + +     T++    KK R +  +   +    + S  NG
Sbjct: 352 TDRTW---VYDCR---TNVPKITKKDRPLTKEHFAEFEKCFGSDPNG 392


>gi|326802758|ref|YP_004320576.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650095|gb|AEA00278.1| N-6 DNA Methylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 287

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/293 (21%), Positives = 121/293 (41%), Gaps = 31/293 (10%)

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHY 294
              +   GQE+   T+ +    M++  + +D      + ++ G TL  D  T +   F  
Sbjct: 2   ENSIRYFGQEINTSTYNLAKMNMMLHGVPTD-----HQKLRNGDTLDADWPTDEPTNFDI 56

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNG 352
            L NPP+ +KW  DK  ++         RF     LP  S     FL+H    L      
Sbjct: 57  VLMNPPYSQKWSADKGFLD-------DPRFAAYGVLPPKSRADFAFLLHGFYHLRTD--- 106

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G   IVL    LF G     E ++R+ +LEN  I+ ++ LP +LF+ T+I T + +L  
Sbjct: 107 -GTMCIVLPHGVLFRGA---SEGKLRQAMLENGYIDTVIGLPENLFYNTSIPTTIIVLKK 162

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
            +T      V  I+A+  +  ++     + I+  +   +I+D Y  RE+  K++    Y 
Sbjct: 163 NRTSR---DVFFIDASKEFEKVKT----QNILTKEHIDKIIDTYNKREDVDKYAHKASYE 215

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                   +  P  +    +   +  ++     ++++   +    + L+ +  
Sbjct: 216 EIQENDYNLNIPRYVDTFEEPEPIDIVQVSKDMQEINQELEQTTAEFLEMVDD 268


>gi|158521272|ref|YP_001529142.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510098|gb|ABW67065.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 490

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/538 (17%), Positives = 182/538 (33%), Gaps = 91/538 (16%)

Query: 17  KNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
              + L  + +  D    +  L     L+  + A         E          D     
Sbjct: 18  NACDQL--NQEGVDARNYVEQLAWLFFLKAFDEA---------ETRREQEADFDDTAYGR 66

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAG 131
           +++G   Y  S ++ +T         ++   +I   S + +    D   +    R+    
Sbjct: 67  RLSGQ--YAWSSWARNTDHPDQMLEFVDGKLWIKLTSPDPQKGLGDDLLAQRFRRIFDNV 124

Query: 132 L--------LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                      ++ +    +          V+S IYE L++R  ++ +  A +F T R +
Sbjct: 125 RNYCRRGISFARVVQQVDKLHFS-SETDVIVLSEIYEDLLKRVAADSAGYAGEFYTQRHI 183

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPI 239
           +     ++           P     +YDP  GT GFL +A +++                
Sbjct: 184 IRAMVEVV----------QPKPKDKVYDPCFGTAGFLGEAADYIRRNNTLSGPQLDALQK 233

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCL 296
              +G E++P T+ +    M++  +E         N++  +TL   S+++    R+   L
Sbjct: 234 KTFYGLEIKPLTYLLGTMNMILHGIEG-------ANLELTNTLEIHSQNVGEKARYDVIL 286

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPP+G K              G    F     + S    LFL H+   L      GGRA
Sbjct: 287 SNPPYGGKMAS-----------GMQTNFRV---RSSATECLFLQHIMANLAK----GGRA 328

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT 415
            +V+    LF G       ++R+ LLE   +  I++LP   F   T + T +      K 
Sbjct: 329 GVVIPEGVLFRGGPDQ---KVRKELLEQFNVHTILSLPAGCFLPYTGVKTNVIFFDRPKD 385

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +     V     T+    +++    R+ I  DQ    L  +  R+ G  S          
Sbjct: 386 DSGTKSVWFCELTNDGFELKST---RKPIEGDQLPDFLAKWEKRKAGDNS---------- 432

Query: 476 RRIKVLRPLRMSFILDKTGLAR-----LEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             + + + +   + L      R         +   +     +   +D+L  +   +  
Sbjct: 433 WTVPIEKIIEQGYDLSAKNPNRKDEYEHRPALELVQSIKAKEERIMDLLNELEGILEK 490


>gi|325980942|ref|YP_004293344.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
 gi|325530461|gb|ADZ25182.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Nitrosomonas sp. AL212]
          Length = 489

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/496 (17%), Positives = 167/496 (33%), Gaps = 97/496 (19%)

Query: 10  SLANFIWKNAEDLWGDF----KH---TDFGKVILP-FTLLRRLEC------ALEPTRSAV 55
           S+++ I    + +  D          +      L     L+  +        L+    + 
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRLSQ-----LVWMLFLKIFDDRENEWELLQDDYQSP 56

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAI 114
             +   +     D E     A   F +   + +L  L +     +  +Y+       +++
Sbjct: 57  LPEKFRWRNWAADAEGMTGDALKQFLDNDLFPALQQLQAK--GGDPRAYV------IRSV 108

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           FE          ++   L+ ++                 +  ++YE L+R   +  +  A
Sbjct: 109 FE-----DAYNYMKSGQLIRQVINKIQEGVDFNKAQERHLFGDMYEQLLRDLQAAGN--A 161

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231
            +F TPR V       +          +P +   + DP CGTGGFL  A+ H+       
Sbjct: 162 GEFYTPRAVTEFMVRRV----------NPRLGEKIMDPACGTGGFLACAIEHMRKHDVKT 211

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFT 288
              +        G E +P  H +C   M++  ++          I+  ++LS+       
Sbjct: 212 VDDETQLQASIFGIEKKPLPHLLCTTNMILHGIDVPIT------IRHDNSLSRPLISWTP 265

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +R    ++NPPFG     ++D +E    +    R      + +D   LFL+ +   L+ 
Sbjct: 266 KERVDVVVTNPPFGG---MEEDGIETNFPSAFRTR------ETAD---LFLVLIMQLLKP 313

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GGRAA+VL    LF       ++ I+  LL+   +  IV LP  +F   T I T L
Sbjct: 314 ----GGRAALVLPDGFLF---GEGIKTRIKEKLLQECNLHTIVRLPNGVFSPYTGIKTNL 366

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKK-RRIINDDQRRQI----------LDIY 456
              S                   +      G K        +  +            D +
Sbjct: 367 LFFSKGTPTRHI---------WFYEHPYPPGVKSYNKTKPMKIEEFDAEAAWWSNEADGF 417

Query: 457 VSRENGKFSRMLDYRT 472
            +RE   ++  +  + 
Sbjct: 418 KNREANPYAWKVSLQD 433


>gi|283796716|ref|ZP_06345869.1| type I restriction enzyme M protein [Clostridium sp. M62/1]
 gi|291075600|gb|EFE12964.1| type I restriction enzyme M protein [Clostridium sp. M62/1]
          Length = 542

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/548 (15%), Positives = 191/548 (34%), Gaps = 77/548 (14%)

Query: 27  KHTDFGKVILPFTLLRRLECAL---EPTRSAVREKYLAFG--GSNIDLESFVKVAGYSFY 81
              ++  VI    L + L          + +       +    S +  +  + +      
Sbjct: 26  DGNEYK-VITQIFLYKFLNDKFGYEIKKKDSRIASAEKWETAYSELPEDDRLDLLDSLSP 84

Query: 82  NTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKN 139
           +        L ST   +     +   F      I +   D  ST         L++   N
Sbjct: 85  DIPRLYPEHLISTLWNQQAKGDFDLIFDSTMVDIADKNIDIFSTQTTKNTKIPLFEKLTN 144

Query: 140 FSGIELHPD-------------------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           F   +                              + ++E++I+ + +       ++ TP
Sbjct: 145 FVTDDAQRAPFARALVDKLVNFSFEDAFAESYDFFAGVFEYVIKDYNTNGGGVYAEYYTP 204

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  +   LL+     L           YDP  GTG  L    + + +           
Sbjct: 205 HAIAVIMARLLVGDRQDLHNIE------CYDPAAGTGTLLMALAHQIGE--------DRC 250

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHY 294
               Q+   +++ +    +++  L          +  QG TL      S D  + ++F Y
Sbjct: 251 TIFAQDRSQKSNKMLKLNLILNGL-----VSSLDHAIQGDTLTDPFHMSDDGKSLRQFDY 305

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSML-----FLMHLANKLE 347
            + NPPF   + + ++ +          RF  G+P         +     FL H+ N ++
Sbjct: 306 EVCNPPFNLDFSETRETLAA-----MPARFWAGIPNVPKKKKESMSIYTCFLQHVLNSMK 360

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+AAIVL +  L      S E ++ + ++   L+  ++++P+++F  T     +
Sbjct: 361 P----NGKAAIVLPTGFL--TAKSSVEGKLLKHIVNERLVYGVISMPSNVFANTGTNVSV 414

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
               N K+     KV LI+A+ L    +    K+  +   +   I+D +++++  + FS 
Sbjct: 415 VFFDNSKSS---DKVILIDASKLGEEYQEGNNKKVRLTPSEIDMIVDTFLNKKTVEDFSV 471

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMM 523
            + Y     ++  +         ++   L + E +    +L+   QS++ +   + K +M
Sbjct: 472 AVSYEDIEAKKCSLAAGQYFDVKIEYVELTQEEFESKMSELTSNLQSYFDEGNVLQKEIM 531

Query: 524 QQIYPYGW 531
           +Q+    +
Sbjct: 532 EQLKRVKY 539


>gi|168183359|ref|ZP_02618023.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Bf]
 gi|237793995|ref|YP_002861547.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Ba4 str. 657]
 gi|182673480|gb|EDT85441.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Bf]
 gi|229263879|gb|ACQ54912.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum Ba4 str. 657]
          Length = 485

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/499 (16%), Positives = 180/499 (36%), Gaps = 71/499 (14%)

Query: 38  FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           F  ++ L+    L  + + +    + F G       +++ +   F N     +  + S  
Sbjct: 35  FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDRQYLRWSK--FKNIEAGEMYRIVSQE 90

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
               ++               D  F     ++    +L KI      I ++         
Sbjct: 91  VFPFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNINMN----DKDTK 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +           F TPR ++ +   L+           P     + DP  G
Sbjct: 142 GDLYEYLLSKIAQAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMG 189

Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A  ++ +  S         +     + +G +++     +    M++  ++   
Sbjct: 190 TAGFLVGAEEYLREKHSELFLVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + NI+   +LS+     +++   L+NPPF    + +  + +              +
Sbjct: 247 ----NPNIEYKDSLSETNKDREKYTLVLANPPFKGSLDYEAVSADI-----------LKV 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +E
Sbjct: 292 SKTKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLE 345

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           AI+++P+ +F     ++T + I +         KV   +         +   KR  I D+
Sbjct: 346 AIISMPSGVFKPYAGVSTAIIIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDN 401

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
               I++ + + +  +  +  +   F    + V      ++ L       +E +    ++
Sbjct: 402 DISDIIERFSNLDKEEDRKRTEQSFF----VPVDEIRENNYDLSINKYKEIEYE----EV 453

Query: 508 SPLHQSFWLDILKPMMQQI 526
                   L+ +K + ++I
Sbjct: 454 HYDEPKVILERVKKLEKEI 472


>gi|307825359|ref|ZP_07655578.1| nucleotidyltransferase substrate binding protein, HI0074 family
           [Methylobacter tundripaludum SV96]
 gi|307733534|gb|EFO04392.1| nucleotidyltransferase substrate binding protein, HI0074 family
           [Methylobacter tundripaludum SV96]
          Length = 623

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/537 (17%), Positives = 181/537 (33%), Gaps = 84/537 (15%)

Query: 38  FTLLRRLECALEPTR--SAVRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
              L+ L+  LE  +   A  E  KY          E++                  L  
Sbjct: 32  LLFLKFLDG-LEQDKAMEAELEGKKYAFILDLPYRWENWAAPKDND---GKPDHNKALTG 87

Query: 94  TNTRN----NLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIE 144
            + R+     L  Y+  F   A     I       F     ++     L +I  +   + 
Sbjct: 88  DDLRDFVDRELFPYLHGFKQKADGPNTIEYKIGEIFGEIKNKIHSGYNLREIIDHIDELR 147

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                     +S++YE  I+  G        ++ TPR ++     ++           P 
Sbjct: 148 FR-SQTEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAIVQVV----------QPK 195

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGML 260
           +  ++YD   G+ GFL +A +++   G      H I      +G+E +   + + +  M+
Sbjct: 196 IGESIYDGAVGSAGFLCEAFDYLTAQGNLTTGDHNILQTRTFYGKEKKSLAYVIAIMNMI 255

Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +E       + NI   +TL++   D+    R+   L+NPPFG K  K+         
Sbjct: 256 LHGIE-------TPNIIHTNTLAENLADIQDKDRYDIVLANPPFGGKERKEVQQNFPI-- 306

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                       +  + + LFL H    L      GGR  +V+ ++ L N    S    +
Sbjct: 307 ------------RTGETAFLFLQHFIKMLR----AGGRGGVVIKNTFLSNTDNAS--VSL 348

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LLE+  +  I+  P   F    + T +          +    QL          RN 
Sbjct: 349 RKLLLESCNLHTILDCPGGTFQGAGVKTVVLFFEKGAPTRKTWYYQL-------EPGRNM 401

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD--YRTFGYRRIKVLRP------LRMSFI 489
           G K   +ND    + +++  +  +   S  +D          + V  P      +  S  
Sbjct: 402 G-KTNPLNDADLAEFIELQQTNADSPKSWSVDAATIDPATFDLSVKNPNGGEAIIHRSPQ 460

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
                +A L+A+        + ++++ ++    M +   +       K ++      
Sbjct: 461 DIMDEIAALDAERPMC--LEISKNYYQELF---MTEDIRWKQRFENYKLALYQLTLA 512


>gi|149199124|ref|ZP_01876163.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Lentisphaera araneosa
           HTCC2155]
 gi|149137721|gb|EDM26135.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Lentisphaera araneosa
           HTCC2155]
          Length = 494

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/494 (15%), Positives = 173/494 (35%), Gaps = 77/494 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++ L+  L+ T+ A          + +  +   ++   +F       + +L +   +
Sbjct: 35  LLFIKGLDE-LQSTKEATASMLDLPVDAPVYSDDQRELRWSAFKELEAQQMFSLFTRVDD 93

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           +   +  +I +   +  + F  +  +  + +++   +L ++ +    I +          
Sbjct: 94  SNPGIFQFIKNLHGDNDSAFSRY-MTDALFQVQSPKMLQRVVEMLDEIPM----QDRDTK 148

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE+L+ +  +        F TPR ++ L   L+           P    T+ DP  G
Sbjct: 149 GDIYEYLLSKIATSG--TLGQFRTPRHIIDLMVDLM----------RPTPQDTIIDPASG 196

Query: 216 TGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  A N++ +                  + +G +++     +    M++  +E   
Sbjct: 197 SCGFLVSANNYLRNNHKEIFTDGALNHHFNNEMFYGHDMDSTMLRIGAMNMMLHGVE--- 253

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGP 326
               + NI +  +L ++      +   L+NPPF     +E    ++    K         
Sbjct: 254 ----NPNIDRRDSLGEENKDENSYSLILANPPFKGALDFEACSKSLLAMCK--------- 300

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                    +LFL  +   L+     GGR A+++    LF   +     +IR  L+E   
Sbjct: 301 ----TKKTELLFLALMIRSLK----LGGRCAVIVPDGVLF--GSSKAHKQIREQLVEKQN 350

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +E ++++P+ +F     ++T + + +    E    KV   +  +      +   KR  I 
Sbjct: 351 LEGVISMPSGVFKPYAGVSTAILLFTKT-DEGGTDKVWFYDMKNDG---FSLDDKRAPIE 406

Query: 446 DDQRRQILDIYVSRENGK-------FSRMLDYRTF----------GYRRIKVLRPLRMSF 488
                 I+  +  R NG+        S  +                Y+ I          
Sbjct: 407 GSDLPDIIKSFHERNNGQDGQSRTAQSFFVPKEEIIENGYDLSINRYKEIVYEEVQYDEP 466

Query: 489 ILDKTGLARLEADI 502
            +    +  LE DI
Sbjct: 467 EIILDRIDSLEKDI 480


>gi|255261889|ref|ZP_05341231.1| type I restriction-modification system, M subunit [Thalassiobium
           sp. R2A62]
 gi|255104224|gb|EET46898.1| type I restriction-modification system, M subunit [Thalassiobium
           sp. R2A62]
          Length = 512

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 151/428 (35%), Gaps = 71/428 (16%)

Query: 38  FTLLRRLECA--LEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              ++RL+    +E  +S       ++ +   GS+   E +  +    F N     +  +
Sbjct: 35  LLFIKRLDDLHTVEERKSEDLGIPMQRNIFPEGSDDKGEPYDNLRWSRFKNFEAREMMRI 94

Query: 92  GSTNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
              +    L       S    + K       FS+         LL K+ +    I +   
Sbjct: 95  VDEHVFPFLRQMGEEGSSYGTHMKD--ARLGFSN-------PNLLAKVVQLLDDIPME-- 143

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   +++E+++ +     +     F TPR +++L   L+          +P    T
Sbjct: 144 --DRDTKGDVFEYMLGKIA--SAGQNGQFRTPRHIINLMVNLM----------APTPQDT 189

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP  GT GFL  +  ++ D                  + HG + +     +    M +
Sbjct: 190 ICDPAAGTCGFLVQSGEYLRDHHPKMLRDKDQRAHFHNDMFHGFDFDSTMLRIGAMNMTL 249

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E       + ++    +L+++    + R+   L+NPPF    + D  + +       
Sbjct: 250 HGVE-------NPDVAYRDSLAEEHGADEGRYSLILANPPFAGSLDYDTTSKDL------ 296

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + K     +LF+      +      GGRAA+V+    LF   +     +IR+ 
Sbjct: 297 -----LKMVKTKKTELLFMALFLRLMRT----GGRAAVVVPDGVLF--GSSKAHKDIRKM 345

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E+  ++AI+ +P+ +F     ++  + + +          V   +         +   
Sbjct: 346 LVEDHKLDAIIKMPSGVFRPYAGVSCAIVVFTKT-GVGGTDDVWFYDMEADGQ---SLDD 401

Query: 440 KRRIINDD 447
           KR  + DD
Sbjct: 402 KRTPLLDD 409


>gi|158313868|ref|YP_001506376.1| N-6 DNA methylase [Frankia sp. EAN1pec]
 gi|158109273|gb|ABW11470.1| N-6 DNA methylase [Frankia sp. EAN1pec]
          Length = 775

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 130/346 (37%), Gaps = 42/346 (12%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM---SNIYEHLIRRFGSEVSEGAE 175
           D S+ +        L  + +    +E  PD     V      I + L+    +     + 
Sbjct: 179 DMSALLGDTSDVRRLVPLIQILDRLEPVPDAGSGDVAPPAGRIADELLAHAATVGGWRSA 238

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           + +TP  VV  A  L            P     ++DP C  G FL  A +H+   G+   
Sbjct: 239 NVVTPPSVVRTAVRL----------TDPVAGDRVHDPFCRAGEFLVGAADHIRSRGTG-- 286

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHY 294
             P L   GQE+ P    +    +L+  L        +++++ G  LS  D   G  F  
Sbjct: 287 -SPKLTVSGQEINPSLRWLARMNLLLHNL-------GAEDLRAGWALSSPDPQPGGPFEV 338

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPPF     +D D             +  G+P   + +  +L H    L      GG
Sbjct: 339 VLVNPPFNVSGWRDGDQN-------PDSSWRYGVPPGHNANYAWLQHALACLAE----GG 387

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           RA +V+ +       A   ES IR  ++E  +++A+VALP  LF  T+I   LW+L    
Sbjct: 388 RAVVVMPAGA--GSSANLQESAIRAAMVEEGVVDAVVALPPRLFVSTSIPVTLWVLRW-- 443

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                  V  ++A      +      R  + D+    I + Y +R 
Sbjct: 444 PSPGHDDVLFVDAHGAGRIVER---NRSELRDEDVDHIAEAYRNRA 486


>gi|50122044|ref|YP_051211.1| subunit M of type I restriction-modification system [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612570|emb|CAG76020.1| subunit M of type I restriction-modification system [Pectobacterium
           atrosepticum SCRI1043]
          Length = 490

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 87/402 (21%), Positives = 157/402 (39%), Gaps = 56/402 (13%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
              NL + I     N +       FS     ++   LL ++    + I+    +    + 
Sbjct: 89  ILKNLTAPID---KNPRGFVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFS-SSQERHLF 144

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE ++R   S  +  A +F TPR V       +           P +  ++ DP CG
Sbjct: 145 GDIYEQILRDLQSAGN--AGEFYTPRAVTRFMVNRI----------DPKLGESIMDPACG 192

Query: 216 TGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TGGFL  A +HV D     +          +G E +   H +C   ML+  +E       
Sbjct: 193 TGGFLACAFDHVKDNYVITTEDHKTLQKQIYGVEKKQLPHLLCTTNMLLHGIEV------ 246

Query: 273 SKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              I+  +TL+K      ++    ++NPPFG     ++D +EK        R      + 
Sbjct: 247 PVQIRHDNTLNKPLSSWDEQVDVIVTNPPFGG---TEEDGIEKNFPAEMQTR------ET 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +D   LFL  +   L       GRAA+VL    LF        ++I++ L E   +  IV
Sbjct: 298 AD---LFLQLIIEVLADK----GRAAVVLPDGTLFGEGVK---TKIKKLLTEECNLHTIV 347

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            LP  +F  + T+I T +   +  +  +   +V        +        K + +  ++ 
Sbjct: 348 RLPKGVFNPY-TSIKTNILFFTKGQPTK---QVWFYE--HPYPDGVKNYSKTKPMKFEEF 401

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           +  +D + +  +G  SR  + +     ++ +   +  +F LD
Sbjct: 402 QTEIDWWGNEADGFASREENKQA---WKVSIDDIIARNFNLD 440


>gi|146281848|ref|YP_001172001.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
 gi|145570053|gb|ABP79159.1| type I restriction-modification system, M subunit [Pseudomonas
           stutzeri A1501]
          Length = 440

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 138/387 (35%), Gaps = 54/387 (13%)

Query: 98  NNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            NL  Y  + S    +++FE          ++   LL ++                    
Sbjct: 43  QNLHEYSNTPSAFVVRSVFE-----DAYNYMKSGQLLRQVINKIQQGVDFNKAQERHEFG 97

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N+YE L+R    + +  A +F TPR V      ++           P +   + DP CGT
Sbjct: 98  NLYEQLLRDL--QNAGNAGEFYTPRPVTEFMVRMV----------DPKLDEKVMDPACGT 145

Query: 217 GGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GGFLT  + H        +  +       +G E +P  H +    M++  +E        
Sbjct: 146 GGFLTCTIEHKRSRYVKTAEDERTLQASIYGVEKKPLPHLLATTNMILHGIEV------P 199

Query: 274 KNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I+  +TL++        +R    ++NPPFG              ++G    F     +
Sbjct: 200 NQIRHDNTLARPLISWGPKERVDCIVANPPFGGME-----------EDGIETNFPAAF-R 247

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             + + LFL+ + + L+     GGRAA+VL    LF     S    I+  LL    +  I
Sbjct: 248 TRETADLFLVLIMHLLKD----GGRAAVVLPDGFLFGEGIKS---RIKEKLLTECNLHTI 300

Query: 391 VALPTDLF--FRTNIATYLWILSNRKTEERRGKV--QLINATDLWTSIRNEGKKRRIIND 446
           V LP  +F  + T I T L   +     +       Q       ++  R    +   + +
Sbjct: 301 VRLPNGVFNPY-TGIKTNLLFFTKGTPTKEVWFYEHQYPAGVKNYSKTRPMRIEEFAVEE 359

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTF 473
                  D + +R   +F+  +     
Sbjct: 360 AWWGSEADGFAARVENEFAWKVSLDEL 386


>gi|289423012|ref|ZP_06424832.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289156586|gb|EFD05231.1| type I restriction-modification system, M subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 292

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 126/314 (40%), Gaps = 34/314 (10%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L  A   +       +       +GQE+   T+ +C   M +  +  D       
Sbjct: 5   GSGSLLLKAEKIL------GRDKIRNGFYGQEINITTYNLCRINMFLHDIGFDKF----- 53

Query: 275 NIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           NI    TL        + F   +SNPP+  KW  D + +          RF P   L   
Sbjct: 54  NIACEDTLIAPAHWDDEPFELIVSNPPYSIKWAGDNNPL-----LINDPRFSPAGVLAPK 108

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F+MH  + L       G AAIV     ++ G A   E +IR++L++N+ ++ I+
Sbjct: 109 SKADLAFIMHSLSWLAS----NGTAAIVCFPGIMYRGGA---EKKIRKYLIDNNFVDCII 161

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + ++   K +    K   I+A++    + N       +  D   +
Sbjct: 162 QLPPNLFFGTSIATCIMVMKKNKAD---NKTLFIDASNECVKVTN----NNKLTQDNMDK 214

Query: 452 ILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           I++ + +R     FS +  Y         +     +     +  +  ++ +   +++   
Sbjct: 215 IVECFANRSEIAHFSHLATYDEISENDYNLSVSTYVEAEDTREKIDIVKLNAEIKEIVAR 274

Query: 511 HQSFWLDILKPMMQ 524
            Q    +I K + +
Sbjct: 275 EQVLRDEIAKIIAE 288


>gi|288560185|ref|YP_003423671.1| type I restriction-modification system M subunit HsdM
           [Methanobrevibacter ruminantium M1]
 gi|288542895|gb|ADC46779.1| type I restriction-modification system M subunit HsdM
           [Methanobrevibacter ruminantium M1]
          Length = 634

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 152/420 (36%), Gaps = 55/420 (13%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAI--FEDFDF 120
             ++ E         F + S  + S+    N     E Y  +  F D+   +  F+  + 
Sbjct: 194 DALEKELLSDPNKNIFLDDSPLNESSSIPLNEAP-FEEYASMELFLDDIAPVEEFDSMEL 252

Query: 121 ---SSTIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               + +  LE       +                    + + +E+L+ +F    S+ + 
Sbjct: 253 SNKENIVTGLENPNHPNSLVNEGWNDRSYDSYRIQKQYSIGDAFEYLLDKFSLNASK-SA 311

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           DF TP DV  L + L+              I ++YDP CG+   L +   HV        
Sbjct: 312 DFYTPNDVSVLVSKLVATNK--------RAIDSVYDPCCGSSSMLLELNKHV-------- 355

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHY 294
              + +  GQE+    + +    M++  +          +I+QG +L      G  +F  
Sbjct: 356 --SLNLICGQEVNAYYYNISRQNMILHNIHF-----KDFDIKQGDSLDSPHHIGYDKFDV 408

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +S  PF   W   K  +  +            L         F+ H+   L+      G
Sbjct: 409 VVSQIPFNVSWTAKKSFLNDQRFKEYN-----ALAPRVKAEYAFIQHMLYHLDDD----G 459

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNR 413
              ++     LF       E  IR+ ++   + ++A++ LP+++F+ TN    + I   +
Sbjct: 460 IMVVIAPHGVLFRSA---SEESIRKIIVSKMNYLDAVIGLPSNMFYSTNSPACVLIF--K 514

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K       V  I+A+  +    N+ K R  +  +   +I+  YVSR    K+SR +  R 
Sbjct: 515 KNRRYDDDVLFIDASKNF----NKIKLRNNLRKEDINKIVGTYVSRAEVDKYSRRVSLRE 570


>gi|148378678|ref|YP_001253219.1| type I restriction enzyme M subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930941|ref|YP_001383062.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936955|ref|YP_001386611.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. Hall]
 gi|148288162|emb|CAL82230.1| type I restriction enzyme M subunit [Clostridium botulinum A str.
           ATCC 3502]
 gi|152926985|gb|ABS32485.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932869|gb|ABS38368.1| putative type I restriction-modification system, M subunit
           [Clostridium botulinum A str. Hall]
          Length = 485

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/499 (15%), Positives = 180/499 (36%), Gaps = 71/499 (14%)

Query: 38  FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           F  ++ L+    L  + + +    + F G     + +++ +   F N     +  + S  
Sbjct: 35  FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDKQYLRWSK--FKNEPAGEMYRIVSEE 90

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
               ++               D  F     ++    +L KI  +   I ++         
Sbjct: 91  VFPFIKDIHGDEQSAYSKYMSDAMF-----KIPTPLMLSKIVDSIDNINMN----DKDTK 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +           F TPR ++ +   L+           P     + DP  G
Sbjct: 142 GDLYEYLLSKIAQAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMG 189

Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A  ++ +  +         +     + +G +++     +    M++  ++   
Sbjct: 190 TAGFLVGAEEYLRENHNDLFFVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + NI+   +LS+     +++   L+NPPF    + +  + +              +
Sbjct: 247 ----NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADL-----------LKV 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +E
Sbjct: 292 SKTKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLE 345

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           AI+++P+ +F     ++T + I +         KV   +         +   KR  I D+
Sbjct: 346 AIISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDN 401

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
               I++ + + +  +     +   F    + V       + L       +E +    ++
Sbjct: 402 DMPDIIERFSNLDKEEDRNRTEQSFF----VPVEEIRENDYDLSINKYKEIEYE----EV 453

Query: 508 SPLHQSFWLDILKPMMQQI 526
                   L+ +K + ++I
Sbjct: 454 VYDEPKVILERVKKLEKEI 472


>gi|327403690|ref|YP_004344528.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319198|gb|AEA43690.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 510

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 159/447 (35%), Gaps = 75/447 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96
              ++ L+         +R +  +             +    F     + +L  +     
Sbjct: 35  LIFIKDLDET------EIRSELKS--KHGFKYTPIFSIEQQPF----RWKNLKEMDVNAR 82

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIAR-----LEKAGLLYKICKNFSGIELHPDTVP 151
            +   + +       +++ +D    S   R     + K  +L ++ +    I++      
Sbjct: 83  HDVFTNTVDGVFPFIRSLGKDKSLFSVYMRGATFGISKPMVLDQVMEKLGNIDMSNQ--- 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                +IYE+L+ +   E    A  F TPR ++ L   L+           P +  T+ D
Sbjct: 140 -DTKGDIYEYLLSKL--EGGGTAGQFRTPRHIIKLMVELM----------RPTLEDTICD 186

Query: 212 PTCGTGGFLTDAMNHVADCG------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           P+CG+ GFL  A  ++                   + +G E +     +    + +  +E
Sbjct: 187 PSCGSAGFLVGAKEYIDKHNSVTDIDRAAHHINTEMFNGMEFDATMLRIASMNLYLHGVE 246

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                    NI     +SKD      +   L+NPPF  K   DKD++    KN       
Sbjct: 247 -------EPNIIDVDAVSKDNTISDAYTLVLANPPF--KGTIDKDSISAGLKNVTD---- 293

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S   +LFL  +  +L+     GGR A+++    LF   +G     IR  ++ N+
Sbjct: 294 -----TSKTELLFLALMLRQLKS----GGRCAVIVPDGVLF--GSGKAHKSIREEIVANN 342

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            +EA++++P+ +F     ++T + I +          V   +   +    ++   KR ++
Sbjct: 343 KLEAVISMPSGVFKPYAGVSTAIMIFTKT-ETGGTDNVWFYD---MQADGKSLDDKRNVL 398

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYR 471
             ++       + +   G  S  L   
Sbjct: 399 VSEEI------FDAFAFGDVSETLTKE 419


>gi|27365370|ref|NP_760898.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Vibrio vulnificus CMCP6]
 gi|27361517|gb|AAO10425.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Vibrio vulnificus CMCP6]
          Length = 496

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 95/496 (19%), Positives = 179/496 (36%), Gaps = 58/496 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +    E  L      I  +   +         +   L    + +  
Sbjct: 33  LLFLKVFDA-----QEEELEFELDDYREPIPAKYLWRNWAADNQGITGDELLEFINDDLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++  A    N +       FS     ++   LL ++    + I+   D+    +  +
Sbjct: 88  PTLKNLTAPKDTNPRGFVVKEAFSDAFNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +  A +F TPR V       L           P +   + DP CGTG
Sbjct: 147 IYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRL----------DPKLGEQIMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFL  + +HV +     +          HG E +   H +C+  M++  +E         
Sbjct: 195 GFLACSFDHVKENYVTSAADHQTLQKQIHGVEKKQLPHLLCITNMMLHGIEV------PV 248

Query: 275 NIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            I+ G+TL+K         +   +NPPFG     ++D +EK        R      + +D
Sbjct: 249 QIKHGNTLNKPLSSWDSNINVIATNPPFGG---TEEDGIEKNFPAEMQTR------ETAD 299

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              LFL  +   L+      GRA +VL    LF        ++I++ L E   +  IV L
Sbjct: 300 ---LFLQLIVEVLDKE----GRAGVVLPDGTLFGEGVK---TKIKKMLTEECNLHTIVRL 349

Query: 394 PTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P  +F  + T I T +   +  +  +   +V        +        K + +  ++ +Q
Sbjct: 350 PNGVFNPY-TGIKTNILFFTKGQPTK---EVWFYE--HPYPEGVKNYSKTKPMKFEEFQQ 403

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +  +G  SR+   +     ++ +   +  +F LD     + E      +    +
Sbjct: 404 EIDWWGNEADGFASRIETKQA---WKVSIEDIIERNFNLDIKNPYQDEVVSHDPEELLAN 460

Query: 512 QSFWLDILKPMMQQIY 527
                  +K +  Q+ 
Sbjct: 461 YQQQQQDIKALRDQLK 476


>gi|88812208|ref|ZP_01127459.1| Putative restriction modification enzyme M subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790459|gb|EAR21575.1| Putative restriction modification enzyme M subunit [Nitrococcus
           mobilis Nb-231]
          Length = 483

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/443 (18%), Positives = 142/443 (32%), Gaps = 56/443 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      +              I  E   +         +  +L    +    
Sbjct: 33  LLFLKIFDA-----QEEELALRYDDYQPPIPEELLWRSWAADPEGITGEALLEFVNNALF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+   A+   N +       F+     ++   LL ++                 ++ +
Sbjct: 88  PQLKRLRATPQTNPRGFVAREVFADAFNYMKNGTLLRQVVNRIEAGIDFHSAKERHLLGD 147

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V      ++           P +   + DP CGTG
Sbjct: 148 IYEQILKDLQSAGN--AGEFYTPRAVTQFMVDII----------DPQLGEQVMDPACGTG 195

Query: 218 GFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFLT  + H+          +        G E +   H +C   ML+  LE         
Sbjct: 196 GFLTCTVEHIRKHYVQTVAAEATLQEQVQGFEKKQLPHLLCTTNMLLHGLEV------PT 249

Query: 275 NIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            I+  +TL    +D    +R    L+NPPFG              ++G    F     + 
Sbjct: 250 RIRHDNTLARPLRDWGPRERVDAVLTNPPFGGME-----------EDGTELNFPQAT-RT 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LFL  +   L+      GRAAIVL    LF        ++I+  LL    +  IV
Sbjct: 298 RETADLFLQLVIQILKP----NGRAAIVLPDGTLFGEGVK---TKIKEKLLTECNLHTIV 350

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            LP  +F  + T I T L   +  +                +        K + I   + 
Sbjct: 351 RLPNGVFNPY-TGIKTNLLFFTKGEPTTEVWYY-----EHPYPPGYKSYSKTKPIRITEF 404

Query: 450 RQILDIYVSRENGKFSRMLDYRT 472
                 + +R+    +  +    
Sbjct: 405 DAEKAWWHARKENAQAWRVSIDE 427


>gi|313673807|ref|YP_004051918.1| site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940563|gb|ADR19755.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 466

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/537 (18%), Positives = 177/537 (32%), Gaps = 81/537 (15%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            + + N +W     L       D+G  I   T L  +          + ++       N 
Sbjct: 1   MSDIVNKLWGMCHTLR--HDGIDYGDYIEQLTYLLFI---------KMADEKGIELPENC 49

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           D E+    +G    +   + L  L                    K +  D  F+ ++ + 
Sbjct: 50  DWETLKNKSGTELTDHYLWVLQKLRDE-----------------KGLLGDI-FAQSMPKF 91

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
                L KI       +    ++   V +  +E L+ +  SE  +GA  + TPR ++   
Sbjct: 92  NNPVNLKKIITMIDAEDW--SSLGVDVKAQAFEGLLEKAASEGKKGAGQYFTPRVLIQSI 149

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPILV 241
             ++                 + DP CGTGGFL  A   + +           K      
Sbjct: 150 VRVMKP------DPLVNKEMKICDPACGTGGFLVAAYEWLIEKTGGAIPVDEIKRIKENT 203

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQEL      + +  + +  L+          I  G T+ +    G+R+   L+NPPF
Sbjct: 204 YYGQELVARPRRLALMNLFLHGLK--------PTIYLGDTIYEPD-RGERYDIVLTNPPF 254

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G K        +          F       S+  + F+ H+   L+     GGRAAIVL 
Sbjct: 255 GTKGAGQIPTRDD---------FTVAT---SNKQLNFVQHIMTILKK----GGRAAIVLP 298

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
            + LF  +A     E+ + ++E+  +  I+ LP   F    N    +  L      E   
Sbjct: 299 DNCLFEDKA----VEVFKIVMEDCNLHTILRLPRGTFVPYANAQANVVFLQKGIPTE--- 351

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           KV + +      +I +  KK R +  +        Y    NG   R+       +R   +
Sbjct: 352 KVWIYDCRS---NIPSITKKDRPLTAEMFADFEQCYGKDPNGNSPRIDQGPEGRFRAFTI 408

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
                  + LD   L   +  +      P       + +  +   +       + ++
Sbjct: 409 DEIKERGYKLDIKWLK--DDTLDDPNDLPEPSDLIAEAVSELEAVVDELNEINNLLE 463


>gi|78188778|ref|YP_379116.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Chlorobium chlorochromatii CaD3]
 gi|78170977|gb|ABB28073.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Chlorobium chlorochromatii CaD3]
          Length = 486

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 89/449 (19%), Positives = 167/449 (37%), Gaps = 66/449 (14%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGS 93
             LR L+   +    A     + Y             +  K A     + S  + + L  
Sbjct: 33  LFLRYLDELEKEKADAAALQGKTYQFIIDKVFRWNYWAMPKTADGKLDHHSVMTGTDLVQ 92

Query: 94  TNTRNNLESYIASFS----DNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147
                 L  Y+ASF     +N K+I       +S    +++    L +I +    +    
Sbjct: 93  -FVDLQLFPYLASFKLKAIENPKSIEYKIGEIYSELKNKVKSGYNLREIIEMIDTLPFGT 151

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S++YE  I+  G         + TPR ++     ++          +P +  
Sbjct: 152 SK-DKHELSHLYETKIKNMG-NAGRNGGQYYTPRPLIRAIINVV----------NPQIGE 199

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            +YD  CG+ GFL +A +++ +       + K       +G+E +   + + V  M++  
Sbjct: 200 KVYDAACGSAGFLCEAYSYMYERMEKTTTNLKTLQENTFYGKEKKNLAYIIGVMNMILHG 259

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +E       + NI   +TL++   D+    R+H  L+NPPFG K  K+            
Sbjct: 260 IE-------APNIFHTNTLTENIRDIQEKDRYHVILANPPFGGKERKEVQQNFDI----- 307

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K  + + LFL H    L+     GGRA IV+ ++ L N    S    +R+ 
Sbjct: 308 ---------KTGETASLFLQHFIKSLK----AGGRAGIVIKNTFLSNADNAS--VSLRKH 352

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LLE+  +  I+ +P   F    + T +   +  +  ++    QL     +         K
Sbjct: 353 LLESCNLHTILDMPAGTFLGAGVKTVVLFFTKGEPTKKIWYYQLDTGRSMG--------K 404

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLD 469
              +NDD  ++   +  +  +   S  +D
Sbjct: 405 TNPLNDDDMQEFKQLQKTLADSDNSWTVD 433


>gi|198282969|ref|YP_002219290.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666304|ref|YP_002425172.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247490|gb|ACH83083.1| N-6 DNA methylase [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518517|gb|ACK79103.1| type I restriction-modification system, M subunit
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 489

 Score =  177 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 167/468 (35%), Gaps = 71/468 (15%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+  +        LE    +    +L +     + E     A   F N   +  L  
Sbjct: 34  MFFLKIFDDREAELMLLEDDYKSPLPNHLRWRAWATNPEGMTGDALADFVNVQLFPYLKE 93

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
              T       + +       +++FE          ++   L+ ++      I+ +    
Sbjct: 94  RLPTAGAQGKRAQV------VRSVFE-----DAYNYMKSGTLMRQVINKICEIDFNNSG- 141

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 +IYE ++R   S  +  A +F TPR V       +          +P +  T+ 
Sbjct: 142 DRHTFGSIYEQILRDLQSAGN--AGEFYTPRAVTRFIVNRV----------NPRLEETVL 189

Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP CGTGGFLT A++H  +        +   +    G E +   H + V  M++  +++ 
Sbjct: 190 DPACGTGGFLTCAIDHKREHYVKTREDEETLVNTIRGFEKKALPHMLAVTNMILHGIDTP 249

Query: 268 PRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   I+  +TLS   KD     R +  ++NPPFG              ++G    F
Sbjct: 250 TH------IRHDNTLSRPYKDYGNADRVNVIITNPPFGGME-----------EDGIENNF 292

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L +  + + LF+  +   L+      GRAAIVL    LF        + +++ LLE 
Sbjct: 293 PAHL-RTRETADLFMALVIKLLKDQ----GRAAIVLPDGFLFGEGMK---TRLKQILLEE 344

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +  IV LP  +F   T I T L   +  K  E             +        K + 
Sbjct: 345 CNLHTIVRLPNGVFAPYTGIKTNLLFFTKGKPTEHVWYY-----EHPYPEGVKNYNKTKP 399

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
           +  ++    +  +    +G  +R+   +     ++ V   +  ++ LD
Sbjct: 400 MRFEEFETEIAWWGDEADGFKARVQTEQA---WKVPVADIVARNYNLD 444


>gi|10717099|gb|AAG22013.1|AF288037_2 putative HsdM [Streptococcus thermophilus]
          Length = 535

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/542 (16%), Positives = 212/542 (39%), Gaps = 72/542 (13%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAF-GGSNIDLESFVKVAGYSF-Y 81
           +  ++   +L  + L + L          V  +  Y      S  D +  ++  G S  +
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFLYEAQNVDSENTYEHLVSMSEEDYDWLLEDIGTSTAW 85

Query: 82  NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
                 + TL      ++     E+ +   + +   IF      +T  RL    L+  I 
Sbjct: 86  MKPNQFIETLHRKQNESDFYETFENTLNQIAIDNNDIFSVHTDRNTAIRLFDERLITDII 145

Query: 138 KNFSGIELHPDTVPD----------------RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            + S       ++ +                   S I+E++I+ +  +      ++ TP 
Sbjct: 146 PDSSKRNEVAKSIINLLARVKFDEAIFSQGFDFFSTIFEYMIKDYNKDGGGTYAEYYTPH 205

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   +L+  D+       G    +++P              + +  S   +     
Sbjct: 206 SVAKIIADILVGNDNPQNVRIYGTHLLVWEPC-------------LMNLASRIGV-DKAT 251

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            + Q++  ++  +    +++  L+         NI +G+T+ ++    ++  Y +SNPPF
Sbjct: 252 VYSQDISQKSSNLLRFNLILNGLQHSIH-----NIVEGNTILRNRHP-EKMDYIVSNPPF 305

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLELPPNGGG 354
              + + +D VE   +  E  RF  G+P    S  +      LF+ H+   L+      G
Sbjct: 306 KLDFSEWRDQVETLPEASE--RFFAGVPKTPKSKKNSMAIYELFVQHIIYSLKSD----G 359

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL +   F       + +IR+ L++N ++  +V++P+++F  T     +  +  + 
Sbjct: 360 QAAVVLPTG--FITAQNGIDKKIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK- 416

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
               +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E  + FS  + Y   
Sbjct: 417 ---NKGDVVLIDASNLGTKVKESKNQKTVLSPEEEQKIVETFIQKEAVEDFSVTVSYEDI 473

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQIYPY 529
             +   +         +D   +   + +        KLS L Q     + K + +Q+   
Sbjct: 474 KEKNYSLSAGQYFDIKIDYVDITAEDFEAKMTAFQNKLSDLFQQSH-ALEKEIEEQMKGL 532

Query: 530 GW 531
            +
Sbjct: 533 KY 534


>gi|256617125|ref|ZP_05473971.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
 gi|256596652|gb|EEU15828.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
          Length = 304

 Score =  177 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 136/312 (43%), Gaps = 34/312 (10%)

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +  N++         P  +  HGQEL   T+ +    +++  ++++      
Sbjct: 1   MGSGSLMLNVRNYLT-------HPDNVKYHGQELNTTTYNLAKMNLILHGVDAEEM---- 49

Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N++ G TL+KD  T + + +   + NPP+   W  D   ++         R+G  L   
Sbjct: 50  -NLRNGDTLNKDWPTDEPYTFDAVVMNPPYSANWSADTTFLDDSR----FNRYG-KLAPK 103

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++
Sbjct: 104 SKADFAFLLHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVI 156

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +P +LFF T+I T + +L   +       V  I+A+  +      GK +  ++++  ++
Sbjct: 157 GMPANLFFGTSIPTTVIVLKKNRQNR---DVLFIDASREFVK----GKNQNKLSEENIQK 209

Query: 452 ILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           IL+ Y  R++ + ++ +  +         +  P  +    ++  +  +      +K+   
Sbjct: 210 ILENYAERKDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQE 269

Query: 511 HQSFWLDILKPM 522
            Q    ++L+ +
Sbjct: 270 QQVLEKELLEAI 281


>gi|110679502|ref|YP_682509.1| type I restriction enzyme methyltransferase subunit, putative
           [Roseobacter denitrificans OCh 114]
 gi|109455618|gb|ABG31823.1| type I restriction enzyme methyltransferase subunit, putative
           [Roseobacter denitrificans OCh 114]
          Length = 480

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 176/510 (34%), Gaps = 87/510 (17%)

Query: 39  TLLRRLECALEPTRSAVREKYLAF-----------------GGSNIDLESFVKVAGY-SF 80
             L+ L+   +        +   +                      D +  +      +F
Sbjct: 33  LFLKYLDDMEQEREDEAELEGKDYTPTLPNDMRWKSWASPKNPDGTDRKDVLTGEDLITF 92

Query: 81  YNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
            NT  + +L       T  +   Y          I     FS    +      L  + + 
Sbjct: 93  VNTELFPTLKKYREDATSPDTIEY------KIGEI-----FSEITNKFRSGYSLRDVLEI 141

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
             G+E +        +S++YE  I+R G        ++ TPR ++     ++        
Sbjct: 142 VDGLEFNTQEAK-HELSDLYESRIKRMG-NAGRNGGEYYTPRPLIRAMIKVV-------- 191

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCV 256
              P +  T+YD  CG+ GFL +A  H+       S +        +GQE +   + + +
Sbjct: 192 --DPKIGETVYDGACGSAGFLCEAYAHMLTTDISASDYSTLQTRTFYGQEKKSLAYIIGI 249

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
             M++  +        + NI++ +TL++   D+    R    L+NPPFG     +     
Sbjct: 250 MNMILHGI-------TAPNIRRTNTLTENVMDIQEKDRHDVILANPPFGSGERPEVQQNF 302

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                           K  + + LF+ H   KL      GGRAA+V+ ++ L NG A   
Sbjct: 303 PI--------------KSGEMAYLFMQHFIRKLR----AGGRAAVVIKNTFLSNGDA--- 341

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
            + +RR LLE   +  ++  P  +F    + T +      +   +     L         
Sbjct: 342 -AALRRELLETCDLHTVLDCPAKVFQGAGVKTVVLFFEKGRKTRKTWYYAL-------DP 393

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
            R+ G K   + DD+  + L++  ++ +   S  +           +   ++  F  ++ 
Sbjct: 394 GRSLG-KGSPLRDDELAEFLELQKTKADSPKSWTVAREDI--DAETMDMSVKNPFAPEEA 450

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMM 523
            L   E  I          +  L+ ++ M+
Sbjct: 451 PLRSPEEIIEDMLARDKETAAILEDIRGML 480


>gi|189423705|ref|YP_001950882.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189419964|gb|ACD94362.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 545

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 83/485 (17%), Positives = 178/485 (36%), Gaps = 71/485 (14%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85
              +F   I+    L + L          +  K          + +    A         
Sbjct: 29  DGNEFK--IITQVFLYKFLNDKFAFEAKRINPKLAKAENWEQAISTLQPDALEMLQLQMG 86

Query: 86  YSLSTLGSTN------TRNNLESYIASFSDNAKAI-FEDFDF-----------------S 121
              + L   +      +R N   +   F D  + I   + D                  S
Sbjct: 87  ADTARLKPEHFVAHLFSRQNAPEFAKLFDDTLRDIAVSNNDIFAVKTDGGTKVTLFDRVS 146

Query: 122 STIARLEKAGLL-YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
             I  + K       +                    + ++E+LI+ +  +      ++ T
Sbjct: 147 EFITDVSKRDAFCRAVINKLVEFSFERIFTQKYDFYAALFEYLIKDYNKDSGGKYAEYYT 206

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +  A+L+  +            + YDP+ G+G  L +  + + +          
Sbjct: 207 PHAVAKIMAAILVPEEQ----RGTVKNVSCYDPSAGSGTLLMNLAHAIGE--------QR 254

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
                Q++  ++ ++         L  +       NI QG+TL+          K+F Y 
Sbjct: 255 CAIFSQDISQKSSSLLR-----LNLILNNLVHSIPNIIQGNTLTHPYHRNGKALKKFDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LFLMHLANKLEL 348
           +SNPPF   +   ++ ++         RF  G+P I   ++       LFL H+   L+ 
Sbjct: 310 VSNPPFKMDFSDFRNELDA---TEHQERFFAGVPNIPKQAVEKMAIYQLFLQHIIYSLKP 366

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GGRAA+V+ +   F       + +IR  L++  ++  +V++P+++F  T     + 
Sbjct: 367 ----GGRAAVVVPTG--FITAQSGIDRKIREKLVDERMLAGVVSMPSNIFATTGTNVSIL 420

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRM 467
            +        + KV LI+A+ L T +++   ++ ++++++  +I+  + SR+  + FS +
Sbjct: 421 FID----ASNKDKVVLIDASSLGTKVKDGKNQKTLLSEEEEDRIIATFNSRQAVEDFSVV 476

Query: 468 LDYRT 472
           ++Y+ 
Sbjct: 477 VEYQE 481


>gi|320321658|gb|EFW77757.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. glycinea str. B076]
          Length = 494

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 147/460 (31%), Gaps = 72/460 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      R    E       S I      +         +  +L      N  
Sbjct: 33  LLFLKIFDD-----RELEWELMDDNYKSPIPDSCRWRTWAADPEGMTGDALKDFIDNNLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++ +  +S    A      F      ++   LL ++                    N
Sbjct: 88  PQLQN-LHEYSTTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQEGVDFNKAQERHEFGN 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE L+R      +  A +F TPR V     +++           P +   L DP CGTG
Sbjct: 147 LYEQLLRDLQEAGN--AGEFYTPRPVTEFMVSMV----------DPKLDEKLMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFLT  + H        +  +        G E +P  H +    M++  +E         
Sbjct: 195 GFLTCTIEHKRSRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIEV------PS 248

Query: 275 NIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            I+  +TLSK        +R H  ++NPPFG              ++G    F     + 
Sbjct: 249 QIRHDNTLSKPLISWGPSERVHCIVANPPFGGME-----------EDGIETNFPAAF-RT 296

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LFL+ +   L+      GRAA+VL    +F     S    I+  LL    +  IV
Sbjct: 297 RETADLFLVLIMQLLKD----NGRAAVVLPDGFMFGDGIKS---RIKEKLLTECNLHTIV 349

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQ 448
            LP  +F  + T IAT L   +     ++            +      G K        +
Sbjct: 350 RLPKGVFNPY-TPIATNLLFFTKGTPTQQ---------VWFYEHQYPAGVKNYNKTRPMR 399

Query: 449 RRQI----------LDIYVSRENGKFSRMLDYRTFGYRRI 478
             +            D + +R   +F+  +       R  
Sbjct: 400 IEEFAVEEAWWGSEADGFAARVENEFAWKVSIDELQARNW 439


>gi|262067420|ref|ZP_06027032.1| putative type I restriction-modification system, M subunit
           [Fusobacterium periodonticum ATCC 33693]
 gi|291378863|gb|EFE86381.1| putative type I restriction-modification system, M subunit
           [Fusobacterium periodonticum ATCC 33693]
          Length = 498

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 91/507 (17%), Positives = 184/507 (36%), Gaps = 69/507 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+   E  +   ++    FG  +             + N  +           R
Sbjct: 35  LIFMKRLDQE-EQRKEKEQKLGSIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDKVR 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156
           N    +I +  ++  ++F  +   + I ++    +L         I  +P  V D     
Sbjct: 94  NEAFEFIKNLDEDKNSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP CGT
Sbjct: 153 DLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200

Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            GFL  ++ ++               K     + HG + +     +    +L+  ++   
Sbjct: 201 SGFLVSSIEYIKKNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMK--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +  +++  +LS D      +   L+NPPF       K +V++   +  L R    +
Sbjct: 258 ----TPKLKRIDSLSTDYSEENEYTLILANPPF-------KGSVDEALLSNTLTR----V 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LF       L+     GGRAA+++    LF   A +    +R+ L+EN+ +E
Sbjct: 303 AKTKKTELLFNALFLRLLK----IGGRAAVIVPDGVLF--GASNAHRNLRKELIENNQLE 356

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           AI+++P+ +F     ++T + I +    +     V   + T       +   KR  + ++
Sbjct: 357 AIISMPSGVFKPYAGVSTGILIFTKT-GKGGTDNVWFYDMTADGY---SLDDKRNPVEEN 412

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTF----------------GYRRIKVLRPLRMSFILD 491
               I++ + + EN K  +  D   F                 Y+ I   +       + 
Sbjct: 413 DIPDIMERFSNLENEKDRKRTDKSFFVPKQEIIDNDYDLSINKYKEIVYEKVEYEEPKVI 472

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDI 518
              L  L   I   KL  L      DI
Sbjct: 473 LEKLEELSKSID-EKLKELKVMLDEDI 498


>gi|121594953|ref|YP_986849.1| N-6 DNA methylase [Acidovorax sp. JS42]
 gi|120607033|gb|ABM42773.1| N-6 DNA methylase [Acidovorax sp. JS42]
          Length = 492

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 176/502 (35%), Gaps = 69/502 (13%)

Query: 38  FTLLRRLECA---LEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +     LE TR        ++L +     D E     A   F +   +     
Sbjct: 34  LLFLKVFDALEEELELTRDDYQSPMAEHLRWRHWAADAEGMTGEALLDFVDKQLFPALKG 93

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            S + + N   Y+       + +FE          ++   LL ++    + I+       
Sbjct: 94  LSADPQRNPRGYV------VRGVFE-----DAYNYMKSGHLLRQVVNKLNAIDF-NRQAE 141

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
               +++YE ++R   S  +  A +F TPR V      +           +P +  ++ D
Sbjct: 142 RHQFNDLYEKILRDLQSAGN--AGEFYTPRAVTQFMVDM----------TNPQLGESVMD 189

Query: 212 PTCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTGGFL  A+ H+      +  +        G E +   H +CV  +L+  +E    
Sbjct: 190 PATGTGGFLVCAIEHLRKQVHNAEQEAVLQNSIRGVEKKQLPHMLCVTNLLLHGIEV--- 246

Query: 270 RDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 I   +TL    +D     R +  L+NPPFG   E   +A            F  
Sbjct: 247 ---PSQIVHDNTLARPLRDYTAADRVNVILTNPPFGGIEEPGIEAG-----------FPA 292

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + +  + + LFL+ + + L+     GGRAA+VL    LF        + I+  LL++  
Sbjct: 293 DV-RTKETADLFLVLIQHLLKP----GGRAAVVLPDGFLFGEGVK---ARIKEQLLQHCN 344

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  IV LP  +F   T I T L   +  +  +             +        K + I 
Sbjct: 345 LHTIVRLPGGVFAPYTGIKTNLLFFTKGQPTQHIWYY-----EHPYPQGVKTYNKTKPIR 399

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
            D+       + + ++G F+  ++       ++ + +     + LD+      E      
Sbjct: 400 IDEFDAEKAWWGTEQDG-FAARVENE--RAWKVGIDQIKAAGYNLDQKNPHIGEQQSHDP 456

Query: 506 KLSPLHQSFWLDILKPMMQQIY 527
                  +      + +  ++ 
Sbjct: 457 DALLADYARLQAEAQALRDELK 478


>gi|254503222|ref|ZP_05115373.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
 gi|222439293|gb|EEE45972.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
          Length = 511

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 142/407 (34%), Gaps = 62/407 (15%)

Query: 35  ILPFTLLRRLECA--LEPTR----SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           I     +R L+    LE  +        E+ +   G++     +  +    F + +   +
Sbjct: 32  ITYLLFMRGLDDIQTLEERKATRFDKPVERVIFPDGNDPRDRPYSDLRWSRFKDKAPAEM 91

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + S +    L   +A          +   F      +    LL K+    S I +   
Sbjct: 92  FEIVSEHVFPFLRE-LAGNDTAHAEHMKGARF-----TIPTPALLAKVVDLLSEIPME-- 143

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   ++YE+++ +     +     F TPR ++ L   L            P    T
Sbjct: 144 --DRDTKGDLYEYMLAKIA--SAGQNGQFRTPRHIIQLMVEL----------TRPTPKDT 189

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP  GT GFL  A  ++ +            K     + HG + +     +    M +
Sbjct: 190 ICDPAAGTAGFLVAAGEYLREKNPELFRDEDLRKHFHEGMFHGYDFDATMLRIGSMNMQL 249

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E         +I+   +L++D       +   L+NPPF    + +  A +       
Sbjct: 250 HGIEG-------GDIRYKDSLAEDHAGDTDAYSLILANPPFAGSLDYETTAKDL------ 296

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + K     +LF+      L+     GGRAA+++    LF   +     E+RR 
Sbjct: 297 -----LKIVKTKKTELLFMALFLKLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRM 345

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426
           L+E+  ++ I+ LP+ +F     ++T + + +   +      V   +
Sbjct: 346 LVEDHKLDGIIKLPSGVFKPYAGVSTAIVLFTKTNSG-GTHHVWFYD 391


>gi|126031631|pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
           Protein (Np_813429.1) From Bacteroides Thetaiotaomicron
           Vpi-5482 At 2.20 A Resolution
 gi|126031632|pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
           Protein (Np_813429.1) From Bacteroides Thetaiotaomicron
           Vpi-5482 At 2.20 A Resolution
          Length = 445

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 151/465 (32%), Gaps = 78/465 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTD---FGKVILPFTLLRRLECALEPTRSAVREK-Y 59
            + +  SL   +W  A  L           F   I   T L  L    +     V     
Sbjct: 5   NSSTEQSLTKKVWNLATTL-----AGQGIGFTDYITQLTYLLFL----KXDAENVEXFGE 55

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
            +   +       +   G       E +L  L      +NL   I               
Sbjct: 56  ESAIPTGYQWADLIAFDGLDLVKQYEETLKLLSE---LDNLIGTI--------------- 97

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           ++    +++K   L K+       +         V   IYE ++ + G +   GA  + T
Sbjct: 98  YTKAQNKIDKPVYLKKVITXIDEEQWL--IXDGDVKGAIYESILEKNGQDKKSGAGQYFT 155

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-- 237
           PR ++      +          +P    T+ DP CGTGGFL  A ++     +  +    
Sbjct: 156 PRPLIQAXVDCI----------NPQXGETVCDPACGTGGFLLTAYDYXKGQSASKEKRDF 205

Query: 238 -PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 HG +  P    +    + +  + +D        I    +L K+          L
Sbjct: 206 LRDKALHGVDNTPLVVTLASXNLYLHGIGTDRSP-----IVCEDSLEKE--PSTLVDVIL 258

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG +     D    +                 +  + FL H    L+     GGRA
Sbjct: 259 ANPPFGTRPAGSVDINRPDFYVE-----------TKNNQLNFLQHXXLXLKT----GGRA 303

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           A+VL  + LF   A  GE+ IR+ LL++  +  I+ LPT +F+   +   +   S  +  
Sbjct: 304 AVVLPDNVLFEAGA--GET-IRKRLLQDFNLHTILRLPTGIFYAQGVKANVLFFSKGQPT 360

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +   ++   +    + +          +        +  Y +R  
Sbjct: 361 K---EIWFYD----YRTDIKHTLATNKLERHHLDDFVSCYNNRVE 398


>gi|20807981|ref|NP_623152.1| Type I restriction-modification system methyltransferase subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|20516555|gb|AAM24756.1| Type I restriction-modification system methyltransferase subunit
           [Thermoanaerobacter tengcongensis MB4]
          Length = 507

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 168/468 (35%), Gaps = 67/468 (14%)

Query: 6   GSAASLANFIWKNAEDLWGD------FKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
            +  SLAN IW+  + +  D          ++ + +     LR L+   E    A  +  
Sbjct: 5   QTRESLANEIWRACDIMRRDNNCTGIM---EYVEHLAWLLFLRFLDAQ-EEEWEAQAQIA 60

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-AKAIFEDF 118
                  ID E       +  + T ++    L +      L  Y+ S   +  +      
Sbjct: 61  GRPYTPIIDSEY-----RWRHWATKDWPADELLA-FVHGRLIPYLRSLGGDPLRETIRSL 114

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                +        L  + +  + I  H        +S +YE L+RR G   +  A +F 
Sbjct: 115 FSERNVIVCASGYNLKDVIQIVNEINFH-SQDDIFTVSQVYEELLRRLG-NENRLAGEFY 172

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHK 235
           TPR VV     L+           P +   +YDP CGT GFL +A   +         H+
Sbjct: 173 TPRPVVRFVVELV----------DPQIGEAVYDPACGTCGFLVEAYLWMKQKERTIEDHR 222

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHY 294
           I       GQE +P    + +  M++  +           + + +TL ++     +RF  
Sbjct: 223 ILQERTFFGQEKKPVPAFLGLVNMMLHGV-------TVPRVMRRNTLEENIRNVSERFDV 275

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGG 353
            ++NPPFG    +                     P  S+   +LFL H+  KL+     G
Sbjct: 276 VVTNPPFGGTEGRHIQQNF---------------PIQSNATELLFLQHIMKKLKP--RDG 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
            R  +V+    LF G A    +E++R LLE   +  +V+LP   F   +++ T L     
Sbjct: 319 ARCGMVVPEGTLFRGGA---FAEVKRDLLEQFNLHTVVSLPPGTFAPYSDVKTALIFFER 375

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
               +     +L     L   ++    K   I D+   +   ++   +
Sbjct: 376 PGPTKEIWYYEL----PLPEGLKKF-SKGNPIQDEHFEEARKLWRGWD 418


>gi|86130654|ref|ZP_01049254.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819329|gb|EAQ40488.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 544

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 159/450 (35%), Gaps = 77/450 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+     TRS ++++      + +D           F          +   +  
Sbjct: 35  LIFIKNLDEV--ETRSELKKQ-----RTGVDFTPIFNEEQQQF------RWKNIKEMDVN 81

Query: 98  NN---LESYIASFSDNAKAI-FEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTV 150
                    ++      + +  E   F+  +       KA +L  + +    +++     
Sbjct: 82  TRHMLFADTVSGIFPFLRNLGVETSAFAKHMRNASYGMKAQVLDSVIEQLDQLDMD---- 137

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 +I+E+++ +   E    +  F TPR ++ L   L+           P +  T+ 
Sbjct: 138 EQDAKGDIFEYMLSKM--EGGGTSGQFRTPRHIIRLMVELM----------QPTLEDTIC 185

Query: 211 DPTCGTGGFLTDAMNHVADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           DP+ GT GFL  A  ++             +    ++ +G E +     +    + +  +
Sbjct: 186 DPSAGTAGFLVGAKEYIDTHYDVMEREAAKEHIDTMMFNGMEFDATMLRIASMNLFLHGV 245

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E       + NI     +SKD      +   L+NPPF    +K+  A + +         
Sbjct: 246 E-------APNIIDVDAVSKDNDIADAYTLVLANPPFKGTIDKESIASDLK--------- 289

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              +   S   +LFL  +  +++     GGRAA+++    LF   +      IR  ++ N
Sbjct: 290 --TVTSTSKTELLFLALMLRQMK----MGGRAAVIVPDGVLF--GSSKAHKSIREEIVAN 341

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +EA++++P+ +F     ++T + I +   +      V   +   +    ++   KR +
Sbjct: 342 HKLEAVISMPSGVFKPYAGVSTAIMIFTKTGSG-GTDHVWFYD---MLADGKSLDDKRNL 397

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           + D       + + +   G     +     
Sbjct: 398 LVD------AETFDAFSFGDAFTKVTSEEL 421


>gi|47779389|gb|AAT38618.1| predicted HsdM [uncultured gamma proteobacterium eBACHOT4E07]
          Length = 475

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 101/502 (20%), Positives = 173/502 (34%), Gaps = 78/502 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTR 97
             L+ LE   E  ++             +D        G    N  + SL      +   
Sbjct: 34  LFLKYLEDFEEDLKNRAI-LDGKQHTPIMDERYMWSSWGR---NEGKNSLIDDDLISFVS 89

Query: 98  NNLESYIASFSDNAKA----------IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            +L  Y+ +F   +K           IF+   F      +E   +L  +     GIE   
Sbjct: 90  EDLFPYLRNFKTISKDTKSIQYKVGQIFDQIKF-----LVESGNILRDVLDEIDGIEFF- 143

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            +     +S++YE  I++ G      A  + TPR +++     +          +P +  
Sbjct: 144 KSSESDELSDLYEESIKQMG-NSGTSAGQYYTPRPLINSIVKAV----------NPTLGE 192

Query: 208 TLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           T+ DP CG+GGFL     H+ +          I       GQE      A+ +  M++  
Sbjct: 193 TVLDPACGSGGFLISTFEHILNKKELTAKEFNILQKDTVLGQEKIGIPFAIGIMNMIMHG 252

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +E       + NI + +TLS    DL    R    ++NPPFG    ++  +         
Sbjct: 253 IE-------TPNIIRDNTLSTNTLDLQDKDRVDVIVANPPFGGSEREEIKSNFAIQ---- 301

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                      S+ + LF+ +   KL+     GGRA +++ ++ L N  A S    +R+ 
Sbjct: 302 ----------SSETAYLFMQYFLKKLK----IGGRAGLIIKNTFLSNPDAAS----LRQL 343

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL+   +  IV LP  +F  T + T        K  +     QL          RN G K
Sbjct: 344 LLKECNLHTIVDLP-KVFGTTGVQTVALFFEKGKKTKDIFYYQL-------NLDRNIG-K 394

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              +N     +  D++ SR++ K S  +           +  P   +           E 
Sbjct: 395 TNPLNKKDLEEFDDLFQSRKDSKNSWKISINDIDKETWDL-SPTNPNVEDTSEKRTPSEI 453

Query: 501 DITWRKLSPLHQSFWLDILKPM 522
                 L          I + +
Sbjct: 454 IAEIEALDSEAAKAMAAIKELL 475


>gi|237740355|ref|ZP_04570836.1| type I restriction modification system M subunit [Fusobacterium sp.
           2_1_31]
 gi|229422372|gb|EEO37419.1| type I restriction modification system M subunit [Fusobacterium sp.
           2_1_31]
          Length = 498

 Score =  176 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 86/504 (17%), Positives = 186/504 (36%), Gaps = 60/504 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+   E  +   ++    FG  +             + N  +           R
Sbjct: 35  LIFMKRLDQE-EQRKEKEQKLGNIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDKVR 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156
           N    +I +  ++  ++F  +   + I ++    +L         I  +P  V D     
Sbjct: 94  NEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP CGT
Sbjct: 153 DLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200

Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            GFL  ++ ++               K     + HG + +     +    +L+  ++   
Sbjct: 201 SGFLVSSIEYIKRNFKDILATSPEIYKYFSTSMIHGNDTDATMLGISAMNLLLHDMK--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +  +++  +LS D      +   L+NPPF       K +V++   +  L R    +
Sbjct: 258 ----TPKLKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR----V 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LF+      L+     GGR A+++    LF   A +    +R+ L+EN+ +E
Sbjct: 303 VKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQLE 356

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A++++P+ +F     ++T + I +    +     V   + T       +   KR  + ++
Sbjct: 357 AVISMPSGVFKPYAGVSTGILIFTKT-GKGGTDNVWFYDMTADGY---SLDDKRNPVEEN 412

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
               I++ + + EN K  +  D   F         P +     D         +I + K+
Sbjct: 413 DIPDIIERFSNLENEKDRKKTDKSFF--------VPKQEIVDNDYDLSINKYKEIIYEKV 464

Query: 508 SPLHQSFWLDILKPMMQQIYPYGW 531
                   L+ L+ + + I     
Sbjct: 465 EYEEPKVILEKLEELSKSIDEKLK 488


>gi|223983263|ref|ZP_03633456.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM
           12042]
 gi|223964756|gb|EEF69075.1| hypothetical protein HOLDEFILI_00736 [Holdemania filiformis DSM
           12042]
          Length = 500

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 145/392 (36%), Gaps = 54/392 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
              I +L    +L K+  +   I         + +  ++YE+L+ +  +        F T
Sbjct: 120 DDAIFKLPTPLVLSKVIDSLDDIYDSMSKSEKKDIRGDVYEYLLSKIATAG--RNGQFRT 177

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--------VADCG 231
           PR ++ +   L+          +P    T+ DP CGT GFL +A  +        +    
Sbjct: 178 PRHIIEMMVKLV----------NPKPEDTICDPACGTAGFLVEASTYLIDTYKNDILMNK 227

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +       + HG +++     +    M+   +ES         I+   +LS       +
Sbjct: 228 QNRDHYMNHMFHGFDMDRTMLRIGAMNMMTHGVESPF-------IEYRDSLSDQNLDQDK 280

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  + +              + K     +LFL      L+    
Sbjct: 281 YSLVLANPPFKGTLDAESVSSDL-----------LKVAKTKKTELLFLALFIRMLK---- 325

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A ++    LF   + +   +IR+ L+E + +EA++++P+ +F     ++T + I 
Sbjct: 326 IGGRCACIVPDGVLF--GSSNAHVQIRKALIEENRLEAVISMPSGVFKPYAGVSTGILIF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           +         KV   +   +     +   KR I+ ++    I++ + + +     +  D 
Sbjct: 384 TKT-GHGGTDKVWFYD---MKADGFSLDDKRSIVKENDIPDIINRFKNLDKEIDRKRTDQ 439

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
             F    +     +  ++ L       +  + 
Sbjct: 440 SFF----VNKEEIVNNNYDLSINKYKEVVYEK 467


>gi|288917625|ref|ZP_06411989.1| N-6 DNA methylase [Frankia sp. EUN1f]
 gi|288351018|gb|EFC85231.1| N-6 DNA methylase [Frankia sp. EUN1f]
          Length = 761

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 113/304 (37%), Gaps = 39/304 (12%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             I + L+    +     +    TPR VV +A  L           +P     ++DP C 
Sbjct: 214 GPIADELLAHATTAGGRRSGLLTTPRSVVRMAVRL----------TNPVGGERIHDPFCR 263

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            G FLT A +HV     +      L+  G   +     +    +L+  L         +N
Sbjct: 264 AGEFLTAAADHVRSRNPN---TSGLIASGHTSDSSIAGIARMNLLLHDL-------APQN 313

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           ++ G     D    + F   L NPPF   + +D   +           +  G P   + +
Sbjct: 314 LRVGHAGWPDQKPDEMFDLVLVNPPFNDSYWQDTTFLNSF--------WPYGEPPSHNAN 365

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             +L      L       GRAA+V+         A   ES IR  ++    ++A+V+LP 
Sbjct: 366 YAWLQFALTSLAKD----GRAAVVMPVGA--GSSANPRESFIRAAMVSAGAVDAVVSLPP 419

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            LF  T I   LWIL  R+ +  R  V  I+A    T +      R  + D+   +I+  
Sbjct: 420 RLFAHTLIPATLWIL--RRPDHDRDDVLFIDARGAGTPVDRI---RLELRDEDIDRIVAA 474

Query: 456 YVSR 459
           Y  R
Sbjct: 475 YQDR 478


>gi|254491510|ref|ZP_05104689.1| N-6 DNA Methylase family [Methylophaga thiooxidans DMS010]
 gi|224462988|gb|EEF79258.1| N-6 DNA Methylase family [Methylophaga thiooxydans DMS010]
          Length = 488

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/458 (18%), Positives = 160/458 (34%), Gaps = 71/458 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTL 91
              L+ L+  LE  R    E         ID++      +  K A  SF +    +   L
Sbjct: 32  MLFLKYLDD-LEQERKLEAELMGEDYRYIIDVDHRWSSWAAPKDANGSFDHNKALTGLDL 90

Query: 92  GSTNTRNNLESYIASF-----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
                   L  Y+  F     S +         F     +++    L    +    +   
Sbjct: 91  I-DYVDGELFPYLKGFKQRAESPDTIEYKIGEIFGEIRNKIQSGYSLRDAIEKVDELRFR 149

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
              V    +S++YE  I+  G    +   ++ TPR ++     +            P + 
Sbjct: 150 -SQVEKHELSHLYETKIKNMG-NAGKNGGEYYTPRPLIRAMIDV----------TKPKIG 197

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVCVAG 258
            T+YD   G+ GFL +A +++   G   K               + +E +   + + +  
Sbjct: 198 ETIYDGAAGSAGFLCEAYDYLRQGGREKKQLSTNDLKTLQERTFYAKEKKSLAYVIAIMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +E       + N+   +TL++   D+    +    L+NPPFG K  K+       
Sbjct: 258 MILHGIE-------TPNVMHTNTLAENLQDIQPSNQHDIILANPPFGGKERKEVQQNFPI 310

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                         K  + + LFL H    L+     GGRAAIV+ ++ L      +   
Sbjct: 311 --------------KTGETAFLFLQHFMKTLKP----GGRAAIVIKNTFL--SNTDNAAI 350

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            +R+ LLEN  +  ++  P   F    + T +   +  +  ++    QL          R
Sbjct: 351 ALRKELLENHNLHTVLDCPAKTFLGAGVKTVVLFFTKGEPTQKVWNYQL-------DPGR 403

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           + G K   ++D    + + +    E+   S  ++    
Sbjct: 404 SLG-KTNPLHDKDLEEFVTLQKGFEDSDKSWSINVEDL 440


>gi|53715506|ref|YP_101498.1| type I restriction-modification system DNA methylase [Bacteroides
           fragilis YCH46]
 gi|52218371|dbj|BAD50964.1| type I restriction-modification system DNA methylase [Bacteroides
           fragilis YCH46]
          Length = 271

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/278 (23%), Positives = 120/278 (43%), Gaps = 38/278 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           + G+L  +    + I+         ++  +YE  ++ F     +   +F TP  +V L  
Sbjct: 28  EPGVLKSVVDEINKIDPQ-KFNDHDLIGRVYESFLQAFSINADKEEGEFYTPHSIVELIA 86

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           +L+                T+YDP CG+GG    A   +   G + K    +  +GQE E
Sbjct: 87  SLI-----------EPFDGTVYDPCCGSGGMFVQAAIFIEAHGGNTKA---VNVYGQESE 132

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P T+ +    + IR +            +  ST S D     +F   ++NP      +K 
Sbjct: 133 PATYRLAKMNLAIRGISYHLGD------RAVSTFSDDQHKELKFDNTMANP-----LKKY 181

Query: 309 KDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +    E       R+ G G+P  S+ +  +++H+ NKL +     G A  +L++  L +
Sbjct: 182 AEYGGFE----TDPRWQGYGVPPTSNANYAWILHILNKLNVSC---GIAGFLLANGALGD 234

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                    IR+ L+E+D +EAI+  P ++F+ T+I++
Sbjct: 235 NDTQG----IRKQLIESDKVEAIIVSPRNMFYSTDISS 268


>gi|218439053|ref|YP_002377382.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218171781|gb|ACK70514.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 509

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 197/558 (35%), Gaps = 82/558 (14%)

Query: 7   SAASLANFIWKNAEDLWGD------FKHTDFGKVI--LP-FTLLRRLE---CALEPTRSA 54
           S   L N IW+  + L  D       +       I  L     L+ L+            
Sbjct: 2   SKEQLTNDIWRACDILRRDNNCGGIME------YIEHLAWLLFLKFLDEQEDTFALEAEL 55

Query: 55  VREKYLAFGGSNIDLESF------VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
             EKY           ++       K       NT E+   TL     +  L  Y+AS S
Sbjct: 56  RNEKYHYMIEGEYRWSNWVTKGLGKKKKQSDKRNTPEWDADTLMG-FVKEKLIPYLASLS 114

Query: 109 DNA-KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            +  + +        T+   +    L  + +    I+          +S+ YE+L++R G
Sbjct: 115 GSPEREVIAGIFGGRTVILCDSVYNLKDVLEIVDRIDFSNSD-DIYTVSHTYENLLQRLG 173

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           SE ++ A +F TPR V+     ++           P +  T+YDP CGT GFL  A  ++
Sbjct: 174 SE-NKMAGEFYTPRPVIRFMVEVI----------DPKIGETVYDPACGTCGFLVAAYEYM 222

Query: 228 ADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                  +           GQE +P    +    M++  +       L  +IQ+ +TL +
Sbjct: 223 KQWEQTIRDRDILQRHTFFGQEKKPLPALLGTMNMVLHGV-------LVPDIQRKNTLEE 275

Query: 285 D-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHL 342
           D     K++   L+NPPFG    K+   ++K              P  ++   +LFL H+
Sbjct: 276 DTRTAIKKYDIILTNPPFGG---KENKQIQKNF------------PVSANATELLFLEHI 320

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401
             KL+   N   R  +V+    LF   A      ++ WLL +  +  +V+LP   F   +
Sbjct: 321 IKKLKTDDNA--RCGMVVPEGTLFRSGA---FGTVKEWLLNDFNLVMVVSLPPGTFAPYS 375

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE- 460
           ++   L      K      +V       L   ++    K   I+D   RQ+ +I+   + 
Sbjct: 376 DVKAALLFFERGKQG---DEVLYQEVV-LPEELKKF-SKGNPIDDIHFRQVREIWQQMKA 430

Query: 461 ----NGKFSRMLDYRTFGYRRIKVLRPLRMSFI-LDKTGLARLEADITWRKLSPLHQSFW 515
                GK   + ++  F      + R   ++      T   +L            +    
Sbjct: 431 YQQGKGKKPEITEFSWFEKTEDLIKRGFDLAAKNPTTTEREKLPEPSVLLDRIIKNNEKL 490

Query: 516 LDILKPMMQQIYPYGWAE 533
              L  + Q++      +
Sbjct: 491 HQNLLSLKQKLDEGVKWD 508


>gi|170724868|ref|YP_001758894.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908]
 gi|169810215|gb|ACA84799.1| N-6 DNA methylase [Shewanella woodyi ATCC 51908]
          Length = 493

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 164/477 (34%), Gaps = 61/477 (12%)

Query: 10  SLANFIWKNAEDLWGD--FKHTDFGKVILP----FTLLRRLECALEPTRSAVREKYLAFG 63
           S+++ I    + +  D            L        L+  +      +    E  L   
Sbjct: 2   SISSAIKSIQDIMRKDAGVDGDAQR---LGQMSWLLFLKVFDA-----QEEELELELDDY 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              I  +   +         +   L    +      L++  A    N +       FS  
Sbjct: 54  REPIPEQFLWRNWAADNQGITGEELLDFVNDELFPQLKNLTAPIDKNPRGYVVKEAFSDA 113

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
              ++   LL ++    + I+   D+    +  ++YE +++   S  +  A +F TPR +
Sbjct: 114 FNYMKNGTLLRQVINKLNEIDFT-DSKERHLFGDLYEQILKDLQSAGN--AGEFYTPRAI 170

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPIL 240
                A+            P +  ++ DP CGTGGFL  A +HV                
Sbjct: 171 TKFIVAV----------TDPKLGESIMDPACGTGGFLACAFDHVKTNYVKSGEDHKTLQQ 220

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNP 299
              G E +   H +C   M++  +E          I+ G+TL+K       +    ++NP
Sbjct: 221 QIFGVEKKQLPHLLCTTNMMLHGIEV------PVQIKHGNTLNKPLSSWDDQVDVIITNP 274

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG     ++D +EK   +    R      + +D   LFL  +   L       GRAA+V
Sbjct: 275 PFGG---TEEDGIEKNFPSEMQTR------ETAD---LFLQLIIEVLATK----GRAAVV 318

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE 417
           L    LF        ++I++ L E   +  IV LP  +F  + T I T +   +  +  +
Sbjct: 319 LPDGTLFGEGVK---TKIKKLLTEECNLHTIVRLPNGVFNPY-TGIKTNILFFNKGQPTK 374

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI--YVSRENGKFSRMLDYRT 472
                +      +    + +  K      +     ++   + SR   + +  +    
Sbjct: 375 DVWFYEHPYPAGVKNYNKTKPMKFEEFATELSWWGVETDGFASRVENEQAWKVSIDD 431


>gi|330941027|gb|EGH43949.1| type I restriction-modification system, M subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 494

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 146/460 (31%), Gaps = 72/460 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      R    E       S I      +         +  +L      N  
Sbjct: 33  LLFLKIFDD-----RELEWELMDDNYKSPIPDSCRWRTWAADPEGMTGDALKDFIDNNLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++ +  +S    A      F      ++   LL ++                    N
Sbjct: 88  PQLQN-LHEYSTTPSAFVVRSVFEDAYNYMKSGQLLRQVINKIQEGVDFNKAQERHEFGN 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE L+R      +  A +F TPR V      ++           P +   L DP CGTG
Sbjct: 147 LYEQLLRDLQEAGN--AGEFYTPRPVTEFMVRMV----------DPKLDEKLMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFLT  + H        +  +        G E +P  H +    M++  +E         
Sbjct: 195 GFLTCTIEHKRSRYVKTAEDERTLQASIFGVEKKPLPHLLATTNMILHGIEV------PS 248

Query: 275 NIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            I+  +TLSK        +R H  ++NPPFG              ++G    F     + 
Sbjct: 249 QIRHDNTLSKPLISWGPSERVHCIVANPPFGGME-----------EDGIETNFPAAF-RT 296

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LFL+ +   L+      GRAA+VL    +F     S    I+  LL    +  IV
Sbjct: 297 RETADLFLVLIMQLLKD----NGRAAVVLPDGFMFGDGIKS---RIKEKLLTECNLHTIV 349

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQ 448
            LP  +F  + T IAT L   +     ++            +      G K        +
Sbjct: 350 RLPKGVFNPY-TPIATNLLFFTKGTPTQQ---------VWFYEHQYPAGVKNYNKTRPLR 399

Query: 449 RRQI----------LDIYVSRENGKFSRMLDYRTFGYRRI 478
             +            D + +R   +F+  +       R  
Sbjct: 400 IEEFAVEEAWWGSEADGFAARVENEFAWKVSIDELQARNW 439


>gi|294677466|ref|YP_003578081.1| type I restriction-modification system RcaSBIV subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294476286|gb|ADE85674.1| type I restriction-modification system RcaSBIV, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 482

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 173/499 (34%), Gaps = 63/499 (12%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L       R       + Y          + +        ++             
Sbjct: 33  LFLKYLHDLEGERRDRAELEGKTYAPIIDGRYRWDRWAAPKKNGVFDHDTAMTGDDLVRF 92

Query: 96  TRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
               L  ++A F D A     I       F+   ++     +L  + +   G+       
Sbjct: 93  VDGELFPHLALFHDRATGPDTIEYKIGEVFTELRSKFRSGYILRDVLEIVDGLAFKTQA- 151

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               +S +YE  IRR G        ++ TPR ++    A++           P +  T+Y
Sbjct: 152 DKHELSALYETRIRRMG-NAGRNGGEYYTPRPLIRAMIAVV----------DPQIGETIY 200

Query: 211 DPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           D   G+ GFL +A +++       S ++       +GQE +   + + +  M++  +E  
Sbjct: 201 DGAVGSAGFLCEAYDYLRRPDLSASDYETLQRRTFYGQEKKSLAYVIGIMNMVLHGIE-- 258

Query: 268 PRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                + NI   ++L++   D+    R    L+NPPFG     ++  V++          
Sbjct: 259 -----APNIVHTNSLNENVLDIQEKDRHDIVLANPPFGG---GERREVQQNFPI------ 304

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K  + + LFL H   KL      GGRAA+V+ ++ L N    S    +RR LL+ 
Sbjct: 305 -----KSGETAYLFLQHFIRKLR----AGGRAAVVIKNTFLSNTDNAS--VALRRELLDT 353

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
             +  ++  P   F    + T +         ER    QL          R+ G K   +
Sbjct: 354 CNLHTVLDCPQGTFQGAGVKTVVLFFEKGAPTERIWFYQL-------DPGRSLG-KTNAL 405

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           NDD   + +++  +   G  + +++              ++     +   L   E  I  
Sbjct: 406 NDDDMAEFVEMQRTFATGAKAWVVER--TAVDASTCDLSVKNPNAPEAETLRAPEEIIEA 463

Query: 505 RKLSPLHQSFWLDILKPMM 523
                   +  L+ ++ ++
Sbjct: 464 ILARDAETAEILERIRGLL 482


>gi|294782548|ref|ZP_06747874.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
 gi|294481189|gb|EFG28964.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 1_1_41FAA]
          Length = 498

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/507 (17%), Positives = 184/507 (36%), Gaps = 69/507 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+   E  +   ++    FG  +             + N  +           R
Sbjct: 35  LIFMKRLDQE-EQRKEKEQKLGSIFGNFDEKFIFGENHQDIRWSNLIQLGDPKQLYDKVR 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMS 156
           N    +I +  ++  ++F  +   + I ++    +L         I  +P  V D     
Sbjct: 94  NEAFEFIKNLDEDKDSVFSQY-MENAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDTKG 152

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP CGT
Sbjct: 153 DLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPACGT 200

Query: 217 GGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            GFL  ++ ++               K     + HG + +     +    +L+  ++   
Sbjct: 201 SGFLVSSIEYIKKNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK--- 257

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +  +++  +LS D      +   L+NPPF       K +V++   +  L R    +
Sbjct: 258 ----TPKLKRIDSLSTDYSEESDYTLILANPPF-------KGSVDEALLSNTLTR----V 302

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LF+      L+     GGR A+++    LF   A +    +R+ L+EN+ +E
Sbjct: 303 VKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQLE 356

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A++++P+ +F     ++T + I +    +     V   + T       +   KR  + ++
Sbjct: 357 AVISMPSGVFKPYAGVSTGILIFTKT-GKGGTDNVWFYDMTADGY---SLDDKRNPVEEN 412

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTF----------------GYRRIKVLRPLRMSFILD 491
               I++ + + EN K  +  D   F                 Y+ I   +       + 
Sbjct: 413 DIPDIIERFSNLENEKDRKRTDKSFFVPKQEIIDNDYDLSINKYKEIVYEKVEYEEPKVI 472

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDI 518
              L  L   I   KL  L      DI
Sbjct: 473 LEKLEELSKSID-EKLKELKVMLDEDI 498


>gi|218282513|ref|ZP_03488763.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989]
 gi|218216500|gb|EEC90038.1| hypothetical protein EUBIFOR_01345 [Eubacterium biforme DSM 3989]
          Length = 507

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 156/419 (37%), Gaps = 70/419 (16%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
              I ++  A +L K+  +   I    D      +  ++YE+L+ +     +     F T
Sbjct: 120 DDAIFKIPTALVLSKVIDSLDEIYSLMDKTTSMDIRGDVYEYLLSKIA--SAGRNGQFRT 177

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +   L+          +P     + DP CGT GFL  A +++ +   +      
Sbjct: 178 PRHIIRMMVELM----------NPTPQELICDPACGTSGFLVVASDYLMEKYRNDILMNK 227

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                    + +G +++     +    M+   +E       S NI+   +LS       +
Sbjct: 228 QNRDHFMNHMFNGFDMDRTMLRIGAMNMMTHGVE-------SPNIEYRDSLSDQNTDNNK 280

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + D  + +              + K     +LFL      L++   
Sbjct: 281 YSMILANPPFKGSLDYDSVSTDL-----------LKIAKTKKTELLFLALFIRMLKV--- 326

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A ++    LF   +      IR+ +++++ + A++++P+ +F     ++T + I 
Sbjct: 327 -GGRCACIVPDGVLF--GSSKAHKAIRQAIVDDNRLVAVISMPSGVFKPYAGVSTGILIF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKF 464
           +         KV   +   +     +   KR  + +     IL+ + +      R+  + 
Sbjct: 384 TKT-GHGGTDKVWFYD---MKADGFSLDDKRAPVKESDIPDILERFKNLDKEVERKRTEQ 439

Query: 465 SRMLDYRTFG----------YRRI---KVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           S ++D +             Y+ +   KV  P     + D   L R E D    +L  L
Sbjct: 440 SFLVDKQEIIDNDYDLSINKYKEVVYEKVEYPPTSEILADIEALNR-EIDKNLAELKAL 497


>gi|307566324|ref|ZP_07628763.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
 gi|307344901|gb|EFN90299.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
          Length = 301

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 130/345 (37%), Gaps = 55/345 (15%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D  CG+G  L +                I   +GQE    T+ +    ML+  ++   
Sbjct: 1   MLDFACGSGSLLLNVR-------HEMGTNGIGKIYGQEKNITTYNLARMNMLLHGVK--- 50

Query: 269 RRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             D    I  G TL  D              F   ++NPPF  +WE  +       +  +
Sbjct: 51  --DTEFEIHHGDTLVNDWSILNNMNPSKKMEFDAIVANPPFSYRWEPKE-------ETAK 101

Query: 321 LGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             RF   GL   S     FL+H  + L    +G G  AI+L    LF G     E  IR+
Sbjct: 102 DFRFSRYGLAPKSAADFAFLLHGFHYL----SGDGTMAIILPHGVLFRGGK---EETIRK 154

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            LL +D I+A++ LP +LF+ T I   + +L   K   R   +  INA+      +  GK
Sbjct: 155 KLLSDDNIDAVIGLPANLFYSTGIPVCILVL---KKCRRTDDILFINASSEEHYEK--GK 209

Query: 440 KRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           ++ ++      +I++ Y  R E  +++          R++ +       + L+ +    L
Sbjct: 210 RQNLLRPKDINKIVETYQFRIEENRYA----------RKVYMREIKDNGYNLNISRYVNL 259

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
             +     L+ +H+       K    +         F+KE     
Sbjct: 260 SKEEEKIDLAEVHRQLVATEEKIEAARQKH----NEFLKELGLDL 300


>gi|283853809|ref|ZP_06371031.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B]
 gi|283570796|gb|EFC18834.1| N-6 DNA methylase [Desulfovibrio sp. FW1012B]
          Length = 501

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 163/469 (34%), Gaps = 88/469 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTL 91
              LR L+  LE  R+   E         ID        +  K    SF + +  +   L
Sbjct: 32  MLFLRYLDD-LEAERAMEAELLGKDYSYIIDEAHRWSKWAAPKKQDGSFDHDNALTGDDL 90

Query: 92  GSTNTRNNLESYIASF-----SDN-----AKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
            +    + L  Y+  F     S +        IF +       ++ +    L    +   
Sbjct: 91  IAY-VNDVLFPYLRGFKQRASSPDTIEYKIGEIFGEIK-----SKFQSGYSLRDALELVD 144

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +           +S++YE  I+  G        ++ TPR ++     ++          
Sbjct: 145 QLHFR-SQKEKHELSHLYEAKIKNMG-NAGRNGGEYYTPRPLIRAMVRVI---------- 192

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---------------PILVPHGQE 246
            P +  T+YD  CG+ GFL +A +++       +                       G+E
Sbjct: 193 KPKIGETIYDGACGSAGFLCEAFDYLRYGPDGKESENGNGSTLTVDQLRALQTSTFFGKE 252

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGK 303
            +   + + +  M++  +E       + NI   +TL++   D+    R+   L+NPPFG 
Sbjct: 253 KKSLAYVIAIMNMILHGIE-------APNIIHTNTLAENLADVQEKDRYDIILANPPFGG 305

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K   +                     K  + + LFL H    L+     GGRAA+V+ ++
Sbjct: 306 KERGEIQQNFPI--------------KTGETAFLFLQHFIKYLK----AGGRAAVVIKNT 347

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L N    S    +R+ LL++  +  I+  P   F    + T +       +  +     
Sbjct: 348 FLSNSDNAS--RALRQELLQSCNLFTILDCPGGTFLGAGVKTVVLFFQKGASTRKVWYYT 405

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           L          R  G K   +NDD   + + +  +  + + S ++D + 
Sbjct: 406 L-------DPGRKMG-KTTALNDDDLAEFVSLQATFADSEKSWIMDVKD 446


>gi|291458786|ref|ZP_06598176.1| putative type I restriction-modification system, M subunit
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418703|gb|EFE92422.1| putative type I restriction-modification system, M subunit
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 499

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 156/429 (36%), Gaps = 74/429 (17%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
              I ++    +L KI      I    + +    +  ++YE+L+ +           F T
Sbjct: 119 DDAIFKVNTPLMLSKIVDAMDEIYSMMEELHQTDIRGDVYEYLLSKIAQSG--VNGQFRT 176

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++ +   ++           P    ++ DP CGT GFL  + +++ +          
Sbjct: 177 PRHIIRMMVEMM----------DPKPTDSICDPACGTSGFLVASGDYLREKYKKEVLLDK 226

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +       + HG +++     +    M+   +E+         I+   +LS      + 
Sbjct: 227 QNRNHFMNDMFHGYDMDRTMLRIGAMNMMTHGVENPF-------IEYRDSLSDQNPDKEM 279

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + D  + + +            + K     +LFL      L+    
Sbjct: 280 YSLILANPPFKGNLDADTVSTDLQ-----------KVCKTKKTELLFLALFVRMLK---- 324

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A ++    LF   + +    IR+ ++EN  +EA++++P+ +F     ++T + I 
Sbjct: 325 IGGRCACIVPDGVLF--GSSNAHKAIRKEIVENQRLEAVISMPSGVFKPYAGVSTGILIF 382

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           +          V   + T       +   KR  I D+  + I+  + + E  K  +  D 
Sbjct: 383 TKT-GHGGTDDVWFYDMTADG---FSLDDKRTEIKDNDIQDIISRFKNLEAEKGRKRTDK 438

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH--------QSFWLDILKPM 522
                           SF++ K  +A  + D++  K   +          S  +  ++ +
Sbjct: 439 ----------------SFMVSKKEIADNDYDLSINKYKEVEYVAVEYPPTSEIMANIREI 482

Query: 523 MQQIYPYGW 531
            +QI     
Sbjct: 483 EKQIGKEMD 491


>gi|158335391|ref|YP_001516563.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
 gi|158305632|gb|ABW27249.1| type I restriction-modification system, M subunit [Acaryochloris
           marina MBIC11017]
          Length = 486

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 168/478 (35%), Gaps = 61/478 (12%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGG 64
           SL+  I    + +  D          G+  L      +      +    A+ + Y +   
Sbjct: 2   SLSATIKSIQDIMRKDVGVDGDAQRIGQ--LGWMLFFKIFSDQ-DLELEALVDDYESPIP 58

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY----IASFSDNAKAIFEDFDF 120
           + +   ++           +  +L  L        L+      +   +   +       F
Sbjct: 59  AELQWSAWADSEQLGKQALTGEALLDLVDNCLFPALKELDLEDLEGIAQ-GRGALLRSVF 117

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 ++   LL ++    +      ++    +  ++YE L++    + +  A +F TP
Sbjct: 118 EDAYNYMKSGTLLRQVVNKINDNIDFNESKQRDLFGDMYEQLLKDL--QGAGNAGEFYTP 175

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--IPP 238
           R V   A   +          +P +   + DP CGTGGFLT A  H+       +     
Sbjct: 176 RAVTQFAIDRV----------NPQLGERVLDPACGTGGFLTCAFEHLKQQVQGSQDLEQA 225

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYC 295
                G E +P  H +CV  ML+  LE         N++  +TL K   D     +    
Sbjct: 226 KQGVWGVEKKPLPHLLCVTNMLVHGLEV------PTNVRHDNTLRKPLRDYARADQVDVV 279

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           ++NPPFG     ++D +E+        R      + +D   LFL+ +   L+     GGR
Sbjct: 280 VTNPPFGG---MEEDGIERGFPTEFRTR------ETAD---LFLVLVMELLK----AGGR 323

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414
           AAIVL    LF       ++ I+  LL    +  IV LP  +F   T+I T L   +  +
Sbjct: 324 AAIVLPDGTLF---GEGIKTRIKEKLLRECNLHTIVRLPNGVFAPYTSIKTNLLFFTKGE 380

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
             +             +        K + +  ++       +  RE  +F+  +  + 
Sbjct: 381 PTQEIWYY-----EHPYPKGYKSYSKTKPMRIEEFGPEKAWWEQREENEFAWKVSLQE 433


>gi|197119931|ref|YP_002140358.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter bemidjiensis Bem]
 gi|197089291|gb|ACH40562.1| type I restriction-modification system DNA adenine
           N6-methyltransferase [Geobacter bemidjiensis Bem]
          Length = 484

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/455 (18%), Positives = 156/455 (34%), Gaps = 71/455 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESF--------VKVAGYSFYNTSEYSLS 89
              L+ L+  LE  + A+  +      S I  E +            G   +N +  +  
Sbjct: 32  LLFLKYLDG-LEQDK-AMEAELEGKKYSYILDEPYRWETWAAPKGADGQLDHNKA-MTGD 88

Query: 90  TLGSTNTRNNLESYIASFSDNAKA---IFEDFD--FSSTIARLEKAGLLYKICKNFSGIE 144
            L        L  Y+  F   A     I       F     ++     L  I  +   + 
Sbjct: 89  DLR-DFVDRKLFPYLHGFKQKASGPNTIEYKIGEIFGEIKNKIHSGYSLRDIIDHIDELR 147

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                     +S +YE  IR  G        ++ TPR ++     ++           P 
Sbjct: 148 FR-SQSEKHELSQLYEAKIRNMG-NAGRNGGEYYTPRPLIRAIVQVV----------KPE 195

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEPETHAVCVAGML 260
           +   +YD   G+ GFL +A +++        +  K+      +G+E +   + + +  ++
Sbjct: 196 IGERIYDGAVGSAGFLCEAYDYLVAKPNLTTADLKMLQERTFYGKEKKSLAYVIAIMNLI 255

Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +E       + NI   +TL++   D+    RF   L+NPPFG K   +         
Sbjct: 256 LHGIE-------APNIIHTNTLTENLADVQEKDRFDVILANPPFGGKERPEVQQNFPI-- 306

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                       +  + + LFL H    L+     GGRA +V+ ++ L      +    +
Sbjct: 307 ------------RTGETAFLFLQHFIKMLK----AGGRAGVVIKNTFL--SNTDNAAVSL 348

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R+ LLE+  +  I+  P   F    + T +               QL          RN 
Sbjct: 349 RKLLLESCNLHTILDCPGGTFQGAGVKTVVLFFEKGAPTREIWYYQL-------DPGRNM 401

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           G K   +NDD   + +++  +  +   S  ++   
Sbjct: 402 G-KTNPLNDDDLIEFVELRKTLADSPKSWSVNVDD 435


>gi|288573765|ref|ZP_06392122.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569506|gb|EFC91063.1| N-6 DNA methylase [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 237

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 30/256 (11%)

Query: 1   MTEFTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M E   + A+L   N +W  A+ L G    +++  V+L    L+ +  A +   + +   
Sbjct: 1   MAEKKTNGANLGFENQLWAAADKLRGHMDASEYKHVVLGLIFLKYISDAFQSKYAELEAM 60

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNA 111
                      +     A   F+   E     L ++  +  +          I   +   
Sbjct: 61  KE--TDYTDPEDRDEYAAANIFWVPQEARWKRLQNSAKQPTIGKVVDDAMVAIEKENPTL 118

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEV 170
           K +        ++ +      L ++      I L  D      V+  +YE+ + RF +  
Sbjct: 119 KGVLPKDYSRPSLDK----YRLGELIDIIGKIGLGDDESRSKDVLGRVYEYFLGRFAAAE 174

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G  +F TPR VV L   ++                 +YDP CG+GG    +   V + 
Sbjct: 175 GKGGGEFYTPRCVVKLLVGMI-----------EPYKGRVYDPCCGSGGMFVQSERFVEER 223

Query: 231 GSHHKIPPILVPHGQE 246
           G        +  +GQE
Sbjct: 224 GGRLG---DIAIYGQE 236


>gi|126665709|ref|ZP_01736690.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
 gi|126629643|gb|EBA00260.1| type I restriction-modification system, M subunit [Marinobacter sp.
           ELB17]
          Length = 494

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/481 (16%), Positives = 160/481 (33%), Gaps = 67/481 (13%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           S+++ I    + +  D          G+++     L+  +   E       + Y +    
Sbjct: 2   SISSTIKSIQDIMRKDVGVDGDAQRIGQLVW-MLFLKIFDDR-EQEWEVFYDDYKSPLPE 59

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
            +   ++           +   L           L++ +    D+ + +     F     
Sbjct: 60  QLRWRNWAADPEGM----TGDDLKDFIDNTLFTGLQN-LEPAGDDYRGVVIRNVFEDAYN 114

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            ++   L+ ++            +     + ++YE +++   S  +  A +F TPR V  
Sbjct: 115 YMKSGQLMRQVINKLQSGVNFNKSAERHELGDMYEQILKDLQSAGN--AGEFYTPRAVTQ 172

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVP 242
                +           P +   + DP CGTGGFLT  ++H           +       
Sbjct: 173 FMVNRV----------DPKLEEKVMDPACGTGGFLTCTIDHKRTRYVQTPQDEQTLQRTI 222

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNP 299
            G E +P  H +    +++  +E          I+  +TL++        +R    ++NP
Sbjct: 223 IGVEKKPLPHLLATTNLILHGIEV------PDQIKHDNTLARPLISWGPKERVDIIIANP 276

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG              ++G    F     +  + + LF+    + L      GGRAA+V
Sbjct: 277 PFGGME-----------EDGIETNFPAAF-RTRETADLFMTLFIHLLR----NGGRAAVV 320

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418
           L    LF        + ++  LL    +  IV LP  +F   T I T L   +  K  E 
Sbjct: 321 LPDGFLFGEGMK---TRLKEKLLNECNLHTIVRLPNGVFSPYTGIKTNLLFFTKGKPTEN 377

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIIN-DDQRRQI------LDIYVSRENGKFSRMLDYR 471
                       +        K + +  ++ + +I       D + SRE  + +  +   
Sbjct: 378 VWYY-----EHPYPDGVKSYNKTKPMRFEEFQTEINWWGSEADGFTSREETEQAWKVSID 432

Query: 472 T 472
            
Sbjct: 433 D 433


>gi|91217497|ref|ZP_01254456.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Psychroflexus torquis ATCC 700755]
 gi|91184382|gb|EAS70766.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Psychroflexus torquis ATCC 700755]
          Length = 485

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/451 (19%), Positives = 163/451 (36%), Gaps = 65/451 (14%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGS 93
             LR L+              E+Y             +  K A     +    +   L  
Sbjct: 33  LFLRYLDELERDKADEAELKGEEYSFILAEEYRWPNWAMPKDAEGKIDHHVAMTGVDLVQ 92

Query: 94  TNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPD 148
                 L  Y+A F   +DNA  I       FS    +++    L +I +    +     
Sbjct: 93  -FVDGKLFPYLAKFKQEADNANTIEYKIGEIFSELKNKIQSGYNLREILEYADELPFRGS 151

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           T     +S++YE  I+  G         + TPR ++     ++           P +   
Sbjct: 152 T-DKHELSHLYETKIKNMG-NAGRNGGQYYTPRPLIRAMIKVV----------DPQIGEK 199

Query: 209 LYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +YD   G+ GFL +A +++         + K       +G+E +   + + +  M++  +
Sbjct: 200 VYDAAAGSCGFLVEAYDYMYQRMDKTTDNLKTLQEDTLYGKEKKNLAYVIGIMNMILHGI 259

Query: 265 ESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           E       + NI   +TL +   D+    R+H  L+NPPFG K   +             
Sbjct: 260 E-------APNIVHTNTLGENIRDIQEKNRYHVILANPPFGGKERAEVQQNFDI------ 306

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                   K  + + LFL H    L+     GG+AAIV+ ++ L N    S    +R+ L
Sbjct: 307 --------KTGETASLFLQHFIKSLK----IGGKAAIVIKNTFLSNADNASI--SLRKHL 352

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           LE+  +  I+ +P+  F    + T +      +  ++    QL    ++         K 
Sbjct: 353 LESCNLHTILDMPSGTFTGAGVKTVVLFFQKGEPTKKIWYYQLDAGRNMG--------KT 404

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
             +ND+   + + IY  + N + S + +   
Sbjct: 405 NPLNDEDMAEFITIYKEKSNTEKSWIFNVND 435


>gi|57168617|ref|ZP_00367749.1| HsdM [Campylobacter coli RM2228]
 gi|305432345|ref|ZP_07401508.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter coli JV20]
 gi|57019898|gb|EAL56578.1| HsdM [Campylobacter coli RM2228]
 gi|304444693|gb|EFM37343.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter coli JV20]
          Length = 495

 Score =  175 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/547 (18%), Positives = 196/547 (35%), Gaps = 90/547 (16%)

Query: 13  NFIWKNAEDLWGDFK----HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           N I K  + L  D         + + I     L+ L+   E  +        A+      
Sbjct: 3   NKIDKITDILRRD-DGISGAMHYSEQISWILFLKFLDDYEEELKLEAILNDKAYKSI--- 58

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTN----------TRNNLESYIASF--SDNAKAIFE 116
                +   +  +   + S   L   N            N L +Y+ SF  ++N K+I  
Sbjct: 59  ---LEEKFSWRIWAAPKTSEGKLDVKNALSGDDLLSFVNNELFAYLKSFKDNENFKSIEY 115

Query: 117 DFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F     R+     L ++      +           +  +YE L++  GS+    +
Sbjct: 116 KIGGIFEFIDNRIANGHTLREVINLVDELSFS-KESDVFALGEVYEKLLKDMGSDGG-NS 173

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR ++     ++           P     +YDP CG+ GFL ++  H+     + 
Sbjct: 174 GEFYTPRPLIRAMVEVI----------DPKAKERIYDPACGSCGFLVESFLHILYEDRNK 223

Query: 235 KIP-----------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                               G+E  P ++A+ V  M++           S NI + +TL+
Sbjct: 224 NKKANLSVEELEFLQNDALFGKEKTPLSYAMGVMNMILH-------EVKSPNIIKTNTLN 276

Query: 284 K---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFL 339
           K   D+   +++   L+NPPFG    K+K+ ++               P  S+   +LFL
Sbjct: 277 KKITDITQSEKYEVILANPPFGG---KEKEQIQNNF------------PVKSNATELLFL 321

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H+   L    N  GR AI++    LF     +    +++ LLEN  +E +++LP+ +F 
Sbjct: 322 QHILKSL----NNNGRCAIIVPEGVLFQN--SNAFVSVKKDLLENFNLECVLSLPSGVFL 375

Query: 400 R-TNIATYLWILSNRKTEER--RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             + + T +   S  K        KV        +        K + +      + L IY
Sbjct: 376 PYSAVKTNVLFFSKGKRSICGEDDKVYYYELIPPFKLT-----KNKPLEYAHFEEFLKIY 430

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
             R+    S ++  +    R   +    +     ++  L  +E  ++  K +    +  L
Sbjct: 431 KERKITPHSYLVSIKELEERNYDI--SAKNPNSKEEKTLREVEEILSTLKANQEKANELL 488

Query: 517 DILKPMM 523
             ++ ++
Sbjct: 489 QKIQNII 495


>gi|254447352|ref|ZP_05060818.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
 gi|198262695|gb|EDY86974.1| type I restriction-modification system, M subunit [gamma
           proteobacterium HTCC5015]
          Length = 498

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 150/445 (33%), Gaps = 54/445 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      R    E       S I  +   +         +   L         
Sbjct: 33  MLFLKIFDD-----REKEWELMNPDYQSPIPQQLRWRNWAADSEGMTGEKLKDFVDNKLF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+  +    ++ +AI     F      ++   LL ++            T     +  
Sbjct: 88  KQLKE-LTPQGEDRRAIVIRNVFEDAYNYMKSGQLLRQVINKMEEGINFNKTSERHELGT 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE +++   S  +  A +F TPR V       +           P +  T+ DP CGTG
Sbjct: 147 MYEQILKDLQSAGN--AGEFYTPRAVTQFMVNRV----------DPKLEDTVMDPACGTG 194

Query: 218 GFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFLT A+++           +        G E +P  H +    +++  +E         
Sbjct: 195 GFLTCAIDYKRKHYVETPEQEATLQNTIAGVEKKPLPHLLATTNLILHGIEV------PD 248

Query: 275 NIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            I+  +TL    +D    +R    ++NPPFG    +++D +E    +    R        
Sbjct: 249 QIKHDNTLARPLRDWGPKERVDVIVANPPFGG---QEEDGIETNFPSAFRTR-------- 297

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + LF+    + L      GGRAA+VL    LF        + ++  LLE   +  IV
Sbjct: 298 -ETADLFMTLFIHLLRD----GGRAAVVLPDGFLFGEGMK---TRLKEKLLEECNLHTIV 349

Query: 392 ALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            LP  +F  + T I T L   +  K  E     +        +  + +  K      +  
Sbjct: 350 RLPNGVFNPY-TGIKTNLLFFTKGKPTETVWYYEHPYPEGYKSYSKTKPMKFSEFQTEID 408

Query: 450 RQILDI--YVSRENGKFSRMLDYRT 472
               +   + SRE  + +  +    
Sbjct: 409 WWGTEADGFASREETEQAWKMSIDD 433


>gi|229826015|ref|ZP_04452084.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC
           49176]
 gi|229789757|gb|EEP25871.1| hypothetical protein GCWU000182_01379 [Abiotrophia defectiva ATCC
           49176]
          Length = 500

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 133/368 (36%), Gaps = 56/368 (15%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
              I +L    +L K+  +   I    + +    +  ++YE+L+ +           F T
Sbjct: 120 DDAIFKLPTPLVLSKVVDSLDEIYKIMNEIQTIDVRGDVYEYLLSKIAQSG--LNGQFRT 177

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +   L+          +P     + DP CGT GFL  A  ++ +          
Sbjct: 178 PRHIIRMMVELM----------NPSADEVICDPACGTSGFLVAAGEYLKENRKEEIFYNR 227

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +     + +G +++     +    M+   ++       +  I+   +LS       +
Sbjct: 228 QKKEHYMNHMFYGYDMDRTMLRIGAMNMMTHGID-------NPIIEYRDSLSDWNSDKDK 280

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + D  + +              + K     +LFL      L+    
Sbjct: 281 YSLVLANPPFKGSLDADSVSGDL-----------LKVCKTKKTELLFLTLFIRMLK---- 325

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A ++    LF   +     +IR+ ++EN  + A++++P+ +F     ++T + I 
Sbjct: 326 IGGRCACIVPDGVLF--GSSKAHKDIRKEIVENHRLVAVISMPSGVFKPYAGVSTAILIF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464
           +          V   + T       +   KR  ++D+    I   +        R+    
Sbjct: 384 TKT-EHGGTDNVWFYDMTADG---FSLDDKRSPVSDNDIPDITQRFKNLDKESDRKRTDK 439

Query: 465 SRMLDYRT 472
           S M+  + 
Sbjct: 440 SFMVPKKE 447


>gi|282866391|ref|ZP_06275436.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282558787|gb|EFB64344.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 472

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 151/419 (36%), Gaps = 59/419 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             +RRL+  LE  +     +      + I  +    +    F N S  ++ T        
Sbjct: 1   MFIRRLD-ILEQAKENRANRTGRLAENPIYSDDTQVLRWSVFINESPENMLTRVRDGVFP 59

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L +     S  A               +E + LL K     +GI++           ++
Sbjct: 60  WLRALGGEGSTYAH------HMKDARFTIETSNLLTKAVDMINGIDMG----DKDTKGDL 109

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+++ +  +        F TPR ++ L   ++          +P     + DP CGT G
Sbjct: 110 YEYMLSKIATAG--QNGQFRTPRHIIQLMVEMM----------APQPGDEICDPACGTAG 157

Query: 219 FLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           FL  A  +V          P           HG + +     +    ML+  +E      
Sbjct: 158 FLVAAAEYVEQTHREEMFEPAQRQHFNESMFHGFDFDSTMLRIGSMNMLLHSVE------ 211

Query: 272 LSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            + +I+   +L+++      R+   L+NPPF    + D  A + +            + K
Sbjct: 212 -NPDIRYRDSLAQNVAGEADRYSLILANPPFAGSLDHDATAADLQ-----------KVVK 259

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGRAA+++    LF+  +     ++R+ L+E   ++A+
Sbjct: 260 TKQTELLFLALFLRLLKP----GGRAAVIVPGGVLFDSSSN-AYKDMRKLLVEGHKLDAV 314

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           ++LP  +F     ++T + + +   +      V     T       +   KR  + D+ 
Sbjct: 315 ISLPGGVFKPYAGVSTAILVFTKTNSG-GTDNVWFYEVTADGW---SLDNKRSPLLDED 369


>gi|317506901|ref|ZP_07964673.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254829|gb|EFV14127.1| N-6 DNA methylase [Segniliparus rugosus ATCC BAA-974]
          Length = 484

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 153/451 (33%), Gaps = 73/451 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY----SFYNTSEYSLSTLGS 93
              +RRL+         + E      G  I+   F+          F N +   +  + +
Sbjct: 35  LLFIRRLDDV-----QTLAENRARHTGGAIENPVFLPGQSQLRWREFKNAAPVVMHKIVA 89

Query: 94  TNTRNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                 L +      +S++ K     F        +    LL K+      I +      
Sbjct: 90  DEVFPFLRALGDGSTYSEHMKD--ARF-------TIPTPALLSKVVDMLDDIPMT----D 136

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                ++YE+L+ +  +        F TPR ++ L   +            P     + D
Sbjct: 137 RDTNGDLYEYLLSKIAAAG--VNGQFRTPRHIIDLMVKM----------TDPQPKDEICD 184

Query: 212 PTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           P CGT GFL  A  ++ D  +         K     + HG + +     +    ML   +
Sbjct: 185 PACGTAGFLVAASEYIRDTHADALLGEEQRKHFHRSMFHGYDFDSTMLRIGSMNMLQHGI 244

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           E       + +I+   +LS+      +++   L+NPPF          ++ E  + +L R
Sbjct: 245 E-------APDIRYRDSLSEGASEDAEKYTLILANPPFAGS-------LDYEATSKDLQR 290

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K         +            GGRAA+++    LF   +      +R+ L+E
Sbjct: 291 ----VVKTKKTE----LLFLALFLKLLKPGGRAAVIVPDGVLF--GSSKAHKALRQTLVE 340

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +EA+V LP+ +F     ++T +   +   + +  G V   +         +   KR 
Sbjct: 341 EQKLEAVVKLPSGVFRPYAGVSTAILFFTKTDSAD-TGNVWFYDVRADG---FSLDDKRN 396

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            +  +    +L  + + E  +     +   F
Sbjct: 397 PVESNDLPDLLARWKNLEGEEGRSRTEQSFF 427


>gi|227872199|ref|ZP_03990565.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268]
 gi|227841955|gb|EEJ52219.1| type I site-specific deoxyribonuclease [Oribacterium sinus F0268]
          Length = 500

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/470 (15%), Positives = 165/470 (35%), Gaps = 81/470 (17%)

Query: 38  FTLLRRLECA--LEPTRSAVR--------EKYLAFGGSNIDLESFVKVAGYSF------Y 81
              ++ L+    L    +A+          + +  GG  +D         + F       
Sbjct: 34  LMFIKDLDDTDNLRAKEAAMLGLPFQSIFAENVDIGGRVVDGSQLKWSTFHDFPANKMYS 93

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNF 140
              E+    + + +   N     +++S          +    ++++  A   LY + +  
Sbjct: 94  IVQEWVFPFIKNLHGDKN-----SAYSKYMDDAIFKINTPLMLSKIVDAMDELYSMMEEL 148

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
              ++           ++YE+L+ +           F TPR ++ +   L+         
Sbjct: 149 HQTDIR---------GDVYEYLLSKIAQSG--VNGQFRTPRHIIRMMVELM--------- 188

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--------HHKIPPILVPHGQELEPETH 252
             P    ++ DP CGT GFL  + +++ +           +       + HG +++    
Sbjct: 189 -DPNPKDSICDPACGTSGFLVASGDYLRERYKKEVLLDKQNRNHFMNDMFHGYDMDRTML 247

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    M+   +E       + +I+   +LS      + +   L+NPPF    + D  + 
Sbjct: 248 RIGAMNMMTHGVE-------NPSIEYRDSLSDQNPDKELYSLILANPPFKGNLDADTIST 300

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           + +              K     +LF+      L+     GGR A ++    LF   + +
Sbjct: 301 DLQKMC-----------KTKKTELLFIALFVRMLK----IGGRCACIVPDGVLF--GSSN 343

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431
               +R+ ++EN  +EA++++P+ +F     ++T + I +          V   + T   
Sbjct: 344 AHKALRKEIVENQRLEAVISMPSGVFKPYAGVSTGILIFTKT-NHGGTDNVWFYDMTADG 402

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
               +   KR  I D+    I+  + + E  K  +  D   F   + ++ 
Sbjct: 403 ---FSLDDKRSSIKDNDIPDIISRFKNLEQEKDRKRTDKS-FMVSKKEIE 448


>gi|170079467|ref|YP_001736103.1| Type I N6 DNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169887136|gb|ACB00848.1| Type I N6 DNA Methyltransferase [Synechococcus sp. PCC 7002]
          Length = 482

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/467 (17%), Positives = 163/467 (34%), Gaps = 80/467 (17%)

Query: 30  DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
           D+ + I     L+ L+  LE  R +            +D     K   Y      E    
Sbjct: 24  DYAEQISWILFLKYLDD-LETDRESKASLTGEKYEPLLDEPYRWKSWAYPRDEKGEL--- 79

Query: 90  TLGSTNTRNNLESYIAS-----------------FSDNAKAIFEDFDFSSTIARLEKAGL 132
            + +    ++L ++++                  F      I     FS    + +    
Sbjct: 80  -IKTAAVGDDLIAFVSGELFPYFRGFKDYVEPGTFGAKIGEI-----FSGVSNKFQSGYN 133

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++ ++   +           +S++YE  I   G        ++ TPR ++     ++ 
Sbjct: 134 LREVLESIDALRFQT-QQEKHELSDLYETRINNMG-NAGRNGGEYYTPRPLIRAMIRVI- 190

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---KIPPILVPHGQELEP 249
                     P +  T+YD  CG+ GFL +A   +          +       +GQE + 
Sbjct: 191 ---------KPQLGETIYDGACGSAGFLCEAYEFLRPLVKSAAELERLQTATLYGQEKKG 241

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWE 306
             + + V  +++  +E       + NI Q +TL++++       R    L+NPPFG K  
Sbjct: 242 LAYIIGVMNLILHGVE-------APNIIQMNTLTENIQGFQEKDRHDVILANPPFGGKER 294

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           ++                        + + LFL H   +L++    GGRAA+V+ ++ L 
Sbjct: 295 EEIKQNFTIA--------------TGETAFLFLQHFIKRLKV----GGRAAVVIKNTFLS 336

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           N    S    +R+ L  +  +  ++  P   F    + T +         E+    QL  
Sbjct: 337 NADNAS--RALRQELTSSCNLHTVLDCPAKTFLGAGVKTVVLFFEKGTPTEKIWFYQL-- 392

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                   R+ G K   +NDD  ++ ++   +    + S  L  +  
Sbjct: 393 -----DPGRSLG-KTNPLNDDDLKEFVEFQSTFRESERSWFLALKDV 433


>gi|332142754|ref|YP_004428492.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|332142824|ref|YP_004428562.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552776|gb|AEA99494.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552846|gb|AEA99564.1| Type I restriction-modification system methyltransferase subunit
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 548

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 142/439 (32%), Gaps = 69/439 (15%)

Query: 38  FTLLRRLECALEPT-RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
              +RRL+       ++A+  +           +   + +   F N     +  L     
Sbjct: 35  LLFIRRLDEIHTARVKNALVMETEIEKPIFGTEQDSYRWSK--FKNQDPQVMFELVRDKI 92

Query: 97  RNNLESYIAS----FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                  I      F+ + +           I  +  AGLL ++      I++       
Sbjct: 93  FP-FIKTINGEDTTFAKHMRD---------AIFMVPTAGLLDRVVTMIDKIDMD----DR 138

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+++ +   + S     F TPR ++ +   +     D            + DP
Sbjct: 139 DTKGDLYEYMLSKL--QSSGTNGQFRTPRHIIQMMVQMTAPKLDGN------KSDVICDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELE-----PETHAVCVAGMLIRRLE 265
             GT GFL  A  +V +       +       H Q             +    +++  +E
Sbjct: 191 ASGTCGFLMAAEEYVRNTQGGALMRPENSKHFHNQMFNAYDFDQHMLRIGAMNLMLHGVE 250

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDK-------------D 310
                     ++   +LS         +F   L+NPPF      D               
Sbjct: 251 H-------PVVEYRDSLSDQGEHNIKDKFTLILANPPFKGSVSYDDLAPDLLTALGKTPK 303

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               + +  E G             +LFL  +   L+     GGRAA+V+    LF   +
Sbjct: 304 KATAKTETDEEGNKKKKKGPSEKTELLFLALILRMLQP----GGRAAVVVPDGVLF--GS 357

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                EIR+ L+E   +EA+V+LP+ +F     ++T +   +    +     V   +   
Sbjct: 358 TKSHKEIRKTLVEEHKLEAVVSLPSGVFKPYAGVSTAILFFTKT-NDGGTDNVWFYD--- 413

Query: 430 LWTSIRNEGKKRRIINDDQ 448
           +     +   KR  +  +Q
Sbjct: 414 MQADGFSLDDKRTPLIKEQ 432


>gi|322804998|emb|CBZ02558.1| type I restriction-modification system,DNA-methyltransferase
           subunit M [Clostridium botulinum H04402 065]
          Length = 485

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/499 (16%), Positives = 179/499 (35%), Gaps = 71/499 (14%)

Query: 38  FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           F  ++ L+    L  + + +    + F G     + +++ +   F N     +  + S  
Sbjct: 35  FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDKQYLRWSK--FKNEEAGEMYRIVSQE 90

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
               ++               D  F     ++    +L KI      +E+          
Sbjct: 91  VFPFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNLEIE----DKDTK 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YEHL+       +     F TPR ++ +   L+           P     + DP  G
Sbjct: 142 GDLYEHLLS--NISAAGMNGQFRTPRHIIKMMVELM----------KPTPEDIIVDPAMG 189

Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           T GFL     ++ +  S         +     + +G +++     +    M++  ++   
Sbjct: 190 TAGFLVKLEEYLREKHSELFLVQGLKEHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + NI+   +LS+     +++   L+NPPF    + +  + +              +
Sbjct: 247 ----NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADL-----------LKV 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L+     GGR A ++    LF   +  G  +IRR + +N+ +E
Sbjct: 292 SKTKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIADNNKLE 345

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           AI+++P+ +F     ++T + I +         KV   +         +   KR  I D+
Sbjct: 346 AIISMPSGVFKPYAGVSTAIMIFTKT-GTGGTDKVWFYDMKSDGY---SLDDKRNPIEDN 401

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
               I++ + + +  +  +  +   F    + V      ++ L       +E +    ++
Sbjct: 402 DIPDIIERFNNLDKEENRKRTEQSFF----VPVEEIRENNYDLSINKYKEIEYE----EV 453

Query: 508 SPLHQSFWLDILKPMMQQI 526
                   L+ +K + ++I
Sbjct: 454 VYDEPKVILERVKKLEKEI 472


>gi|253578028|ref|ZP_04855300.1| type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850346|gb|EES78304.1| type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. 5_1_39BFAA]
          Length = 510

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 142/420 (33%), Gaps = 56/420 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
              I ++    +L KI      I    +         ++YE+L+ +  +        F T
Sbjct: 129 RDAIFKVPTPLMLDKIVTTMDAIYEQMEQIKSADTRGDVYEYLLSKLATAG--VNGQFRT 186

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
           PR ++ +   ++           P     + DP CGT GFL  A  ++ D          
Sbjct: 187 PRHIIRMMVEMM----------DPKADEIICDPACGTSGFLVAASEYLRDKKKQEVLFNR 236

Query: 233 -HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            + +     + HG +++     +    M+   +E       +  I+   +LS      ++
Sbjct: 237 QNKEHYMNHMFHGYDMDRTMLRIGAMNMMTHGVE-------NPYIEYRDSLSDQNTDKEK 289

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF  K   D D V  +              K     +LFL      L+    
Sbjct: 290 YSLILANPPF--KGSLDYDIVSADLLKVC---------KTKKTELLFLALFIRMLK---- 334

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A ++    LF   + +    IR+ L+E + +EA++++P+ +F     ++T + I 
Sbjct: 335 IGGRCACIVPDGVLF--GSSTAHKAIRKALVEENRLEAVISMPSGVFKPYAGVSTAILIF 392

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464
           +         KV   +   +     +   KR    ++    I++ +        R+    
Sbjct: 393 TKT-GHGGTDKVWFYD---MKADGFSLDDKRTETKENDIPDIIERFRNLDKETDRKRTDQ 448

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S  +           +                  +  +T      +     +  L+ ++ 
Sbjct: 449 SFFVPKEEIAENGYDLSINKYKEIEYVPVEYPSTQEIMTELHEIEMKIGEEMQALEELLG 508


>gi|163785377|ref|ZP_02180005.1| type I restriction-modification system specificity subunit
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879355|gb|EDP73231.1| type I restriction-modification system specificity subunit
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 217

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 37/225 (16%)

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
           FGY +I V RPLR+  +L    L   E  I  +K         L++LK + + +      
Sbjct: 3   FGYYKITVERPLRLKVVLSDENLKSFEEAIKSKKKKKEADYRLLEVLKDISKDLTDEYIY 62

Query: 533 ESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT----------------- 575
           +      +   +     +K +             KD  A PV                  
Sbjct: 63  DFNKFLRLIEKK----GIKINSENKKLIQKYLTEKDENAKPVIKEIYKNKEADRLYGFFE 118

Query: 576 -DVNG-----EWIPDTNLTEYENVPYLE--SIQDYFVREVSPHVPDAYIDKIFIDEKDKE 627
            D++G     E+ PDT+L   ENVP LE   I+ +F REV P+V DA+I+K  I      
Sbjct: 119 IDIDGKKVVVEYEPDTDLRNTENVPLLEEGGIEGFFEREVLPYVTDAWINKDNI------ 172

Query: 628 IGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
             ++GYEI+F ++FY+ +  R+L +I  +LK ++ +   LL+E+ 
Sbjct: 173 --KIGYEISFTKYFYKPEKLRELDEIVLDLKNLQEETEGLLDEIL 215


>gi|270647276|ref|ZP_06222191.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270317229|gb|EFA28814.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 173

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/167 (46%), Positives = 100/167 (59%), Gaps = 16/167 (9%)

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-------------GL 328
           LS   F G  F + LSNPP+GK W KD+  ++  ++     RF                 
Sbjct: 8   LSTISFQGNHFDFMLSNPPYGKNWSKDQAYIKDGNE-VIDSRFKVTLPDYWGNEETLDAT 66

Query: 329 PKISDGSMLFLMHLANKLELPPNG--GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           P+ SDG +LFLM + NK++ P N   G R A V + S LF G AGSGES IRR ++ENDL
Sbjct: 67  PRSSDGQLLFLMEMVNKMKSPKNNKIGSRVASVHNGSSLFTGDAGSGESNIRRHIIENDL 126

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           +EAIV LP +LF+ T I TY+W+LSN K E R+GKVQLI+A  L+  
Sbjct: 127 LEAIVQLPNNLFYNTGITTYIWLLSNNKPEARKGKVQLIDAGLLFRK 173


>gi|260549263|ref|ZP_05823483.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
 gi|260407669|gb|EEX01142.1| N-6 DNA methylase [Acinetobacter sp. RUH2624]
          Length = 492

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 87/453 (19%), Positives = 157/453 (34%), Gaps = 72/453 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+   E  +              +D E              +  ++   +     
Sbjct: 34  LFLKFLDD-YESEKEDESVLSGKDYQPVLDEEHRWSNWACPKNEEGKLDINKARTGDDLT 92

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTI--------ARLEKAGLLYKICKNFSGIEL 145
                 L  Y+  F++ A    +   F+  I         ++     L ++      +  
Sbjct: 93  DYVNEKLFPYLKGFANTAVTGNDKQSFAYKIGAIFQYLDNKVASGHTLREVLDIVDSLNF 152

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                    +S +YE L++  G +    A +F TPR VV      +           P  
Sbjct: 153 Q-SESDLFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMVQAI----------DPKP 200

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETHAVCVAGML 260
             T+YD   G+ GFL +A  H+ D                   G E     + + +  M+
Sbjct: 201 GETIYDAAAGSCGFLVEAFEHLRDKKNQLSTEQWDFIQRDTLFGYEKTSLAYVMGMMNMI 260

Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +E       S N+ +G+TL++   D+    R+   L+NPPFG K +           
Sbjct: 261 LHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKSQIQQNF---- 309

Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                      P  S+   +LFL H    L+     GG+AAIV+    LF  +  S   +
Sbjct: 310 -----------PIQSNATELLFLQHFMKTLKS----GGKAAIVVPEGVLF--QTNSAFKQ 352

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +++ LLEN  +  I++LP  +F   + + T +              V             
Sbjct: 353 VKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSDVWYYECEPEQKLT- 408

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               K + I D+  ++ +++Y SRE  + S  +
Sbjct: 409 ----KNKPITDEHLKEFVELYKSRETTERSWTV 437


>gi|323358027|ref|YP_004224423.1| type I restriction-modification system methyltransferase subunit
           [Microbacterium testaceum StLB037]
 gi|323274398|dbj|BAJ74543.1| type I restriction-modification system methyltransferase subunit
           [Microbacterium testaceum StLB037]
          Length = 494

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 174/512 (33%), Gaps = 80/512 (15%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL-------------ESFVKVAGYSFY 81
           I     ++RL+       +   +K   FG    +                F  +    F 
Sbjct: 32  ITYLLFIKRLD----ELHTKAEQKAARFGDPIQNPIFPDGYDSDLPGRRPFRDLRWSVFT 87

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N S   +  + S +    L    A  S  A+      +       +    LL K+    +
Sbjct: 88  NYSPAEMFDVVSEHVFPWLRRLGAQGSSYAR------NMRDARFTIPTPALLTKVVDLLA 141

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I +           +IYE+++ R  +        F T R ++ L   L          +
Sbjct: 142 EIPME----DRDTKGDIYEYMLLRLSTSG--TNGQFRTARHIIQLMVDL----------Q 185

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAV 254
            P     + DP  GT GFL  A  ++                    +  G + +     +
Sbjct: 186 QPRPDDRIIDPAVGTAGFLITAEEYLRAHHPEIWTDAATRAHFNGPMFTGYDSDASMARI 245

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               ML+  +E       +  I++  +LS+       +   L+NPPF      D + V K
Sbjct: 246 ASMNMLLHGVE-------NPTIERADSLSEGHPGLNEYTLVLANPPFAGSL--DYETVAK 296

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           + +     R            +LFL+ +   L      GGRAA+++    LF   + +  
Sbjct: 297 DLQKVVKTR---------KTELLFLVLMIRMLR----NGGRAAVIVPEGVLF--GSSNAH 341

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +R+ L++   ++A++ LP+  F   T ++T + + +   +      V   +      +
Sbjct: 342 KAVRKMLVDEHKLDAVIKLPSGTFKPYTGVSTAILLFTKT-SSGGTDHVWFYDVRADGMT 400

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
                 KR  I  +    +L  +  R + + +R    ++F   + +++      + L   
Sbjct: 401 ---LDDKRTPIEANDLPDVLARWRER-DAEAARARTDQSFVVPKQEIVDN---DYDLSLN 453

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
               +E +      SPL     LD L+  +Q 
Sbjct: 454 RYKEIEIE-EVEHRSPLKILDELDALEVGIQD 484


>gi|301055839|ref|YP_003794050.1| type I restriction modification system subunit M [Bacillus
           anthracis CI]
 gi|300378008|gb|ADK06912.1| type I restriction modification system M subunit [Bacillus cereus
           biovar anthracis str. CI]
          Length = 484

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/475 (16%), Positives = 162/475 (34%), Gaps = 69/475 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L+   E T+ +      A         +F K   +  +N        L +    
Sbjct: 35  LLFIKGLDEV-EATKES-----EAMFLGIEYEGTFPKEKQHLRWNK----FKNLEAKQMF 84

Query: 98  NNLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           + +   +  F  N     +          I  +    +L KI      IE+         
Sbjct: 85  DVVSKEVFPFIKNLHGKKDSAYAKYMDDAIFMIPTPQMLTKIVDGIDNIEMK----DRDT 140

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TPR ++ +   L+           P     + DP  
Sbjct: 141 KGDLYEYLLLKVATAG--TNGQFRTPRHIIDMIVELM----------KPTPEDIIVDPAA 188

Query: 215 GTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           G+ GFL  +  ++    S         +     + HG +++     +    M++  +E  
Sbjct: 189 GSAGFLVSSGEYLRKNHSDLFLVQGLKQHFNNDMFHGFDMDRTMLRIGAMNMMLHGVE-- 246

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                + NIQ   +LS+      ++   L+NPPF    + +  + +              
Sbjct: 247 -----NPNIQYQDSLSESNKDEDKYTLVLANPPFKGSLDYEAVSADL-----------LK 290

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + K     +LFL      L+     GGR A ++    LF   +     +IR+ ++E   +
Sbjct: 291 VTKTKKTELLFLALFIRMLK----AGGRCASIVPDGVLF--GSTKAHKDIRKEIIEKHKL 344

Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           EAIV++P+ +F     ++T + I +          V   +         +   KR  I+ 
Sbjct: 345 EAIVSMPSGVFKPYAGVSTAIIIFTKT-GVGGTENVWFYDMEADGY---SLDDKRSPIDA 400

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +    ++  + S E  K  +  +   F    + V   +   + L       +E +
Sbjct: 401 NDIPDLVTRFHSLEREKERKRTEQSFF----VPVEEIVENGYDLSINRYKEIEYE 451


>gi|291547735|emb|CBL20843.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 544

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/550 (16%), Positives = 189/550 (34%), Gaps = 81/550 (14%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  +I    L + L          V           +      +      +++   
Sbjct: 30  DGNEYK-IITQVFLYKFLNDKFGYEVKKVSPVLKNAEKWELAYAEMSEDDRLDIFDSLPS 88

Query: 87  SLSTLGSTNTRNNL------ESYIASFSDNAKAIFED-FDFSST----------IARLEK 129
            +  L   +   NL        +   F      I +   D  ST            +L +
Sbjct: 89  DIPLLNPEHLIANLWNQQAKGDFDLIFDSTMTDIADKNIDIFSTQTAQNTKIPLFEKLTQ 148

Query: 130 -----------AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                      A  L     NFS  E            +I+E+LI+ + +       ++ 
Sbjct: 149 YVTDDTARAPFARALVDKLVNFSFEEAFEKHYDFFA--DIFEYLIKDYNTAGGGKYAEYY 206

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL+     L           YDP+ GTG  L    + + +         
Sbjct: 207 TPHAIATIMARLLVGNATDLHSIE------CYDPSAGTGTLLMALAHKIGE--------D 252

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------TGKRF 292
                 Q++   ++ +    +++     +       +  QG TL             + F
Sbjct: 253 KCTIFAQDISQRSNKMLKLNLIL-----NSLVSSLDHAIQGDTLIAPYHKSDNGQELRTF 307

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANK 345
            Y +SNPPF   +   ++ +          RF  G+PK       SM    LF+ H+ N 
Sbjct: 308 DYVVSNPPFKMDFSDTRERIAA-----MPVRFWAGVPKVPAKKKESMAIYTLFIQHVLNS 362

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G+ AIV+ +   F       E +I + +++  ++   +++P+++F  T    
Sbjct: 363 LKST----GKGAIVVPTG--FVTAKSGVEKKILQHIVDEHIVYGCISMPSNVFANTGTNV 416

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            +    N     +  KV LI+A+ L    ++   ++R + D +  +I+D ++++E    F
Sbjct: 417 SVLFFDN---SRKTDKVVLIDASKLGEEYKDGNNQKRRLRDFEIDKIVDTFLNKEAVDDF 473

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKP 521
           S  + Y     ++  +         ++   L++ E +      +   Q ++ +   +   
Sbjct: 474 SVAVTYDEIKEKKYSLAAGQYFDVKIEYVELSQDEFNARMSAYAEKLQEYFAEGDKLKTE 533

Query: 522 MMQQIYPYGW 531
           +M+Q+    +
Sbjct: 534 IMEQLKKVKY 543


>gi|289208799|ref|YP_003460865.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix]
 gi|288944430|gb|ADC72129.1| N-6 DNA methylase [Thioalkalivibrio sp. K90mix]
          Length = 495

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/463 (17%), Positives = 155/463 (33%), Gaps = 76/463 (16%)

Query: 38  FTLLRRLECALEPTRSA---VREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLG 92
              L+ L+            V + Y           ++   K A  +F +    + + L 
Sbjct: 32  MLFLKYLDDLEYERAQEAELVGKSYQYIIDEPYRWSAWAAPKKADGTFDHDEALTGADLI 91

Query: 93  STNTRNNLESYIASFSDNAK--AIFE-DFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147
                ++L  Y+  F   A      E      FS    +      L    +   G+    
Sbjct: 92  G-FVNDDLFPYLQGFRTRATGPDTLEYKIGEIFSEIRNKFSSGYSLRDALELIDGLSFR- 149

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S++YE  IR  G        ++ TPR ++     ++           P +  
Sbjct: 150 SQKEKHELSHLYEAKIRNMG-NAGRNGGEYYTPRPLIRAMIQVV----------KPRIGE 198

Query: 208 TLYDPTCGTGGFLTDAMNHVAD---------------CGSHHKIPPILVPHGQELEPETH 252
            +YD   G+ GFL +A +++                   S          + +E +   +
Sbjct: 199 RIYDAAAGSAGFLCEAHDYLRYGPDGQGDGKRDGSHLSISDLNTLQTRTFYAKEKKSLPY 258

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDK 309
            + +  +++  +E       + N+   ++L++   D+    RF   L+NPPFG K  K+ 
Sbjct: 259 VIGIMNLILHGIE-------APNVIHTNSLTENLSDIQEKDRFDVILANPPFGGKERKEV 311

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                               K  + + LFL H    L+     GGR A+V+ ++ L N  
Sbjct: 312 QQNFPI--------------KTGETAFLFLQHFIKYLK----AGGRTAVVIKNTFLSNSD 353

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
             S    +R+ LL++  +  I+  P   F    + T +          +    QL     
Sbjct: 354 NAS--RALRKELLQSCNLHTILDCPGGTFLGAGVKTVVLFFDKGAPTRKLWYYQL----- 406

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
                R+ G K   +NDD  +  +      ++   S  +D + 
Sbjct: 407 --DPGRSLG-KTNPLNDDDLKDFVARQAGFDDSDNSWTVDVQD 446


>gi|148927363|ref|ZP_01810894.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147887262|gb|EDK72723.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 347

 Score =  174 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 33/299 (11%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V   IYE L  +F S+   GA  + TPR ++   T  L           P   +T+ 
Sbjct: 17  DVDVKGEIYEGLFEKFASDTKTGAGQYFTPRPLIQAMTECL----------RPEPSKTMA 66

Query: 211 DPTCGTGGFLTDAMNHVADC---GSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLES 266
           D   GTGGF     +++A+        K         G E+ P T  +C+  + +  +  
Sbjct: 67  DFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTFTGNEIVPATARLCLMNLFLHNI-- 124

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE--KDKDAVEKEHKNGELGRF 324
               D    I    +L+ D  +GKRF Y L NPPFGKK       +   +  ++    R 
Sbjct: 125 -GDMDSKPPIHLTDSLASD--SGKRFDYILMNPPFGKKSSITVSNEDGTQSKESLTYERQ 181

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  S+  + F+ H+ ++L++     G+AA+++  + LF G A  GE+ IR+ LL+ 
Sbjct: 182 DFWTT-TSNKQLNFVQHICSQLKVD----GKAAVIVPDNVLFEGGA--GET-IRKKLLQT 233

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--RRGKVQLIN--ATDLWTSIRNEGK 439
             I  I+ LPT +F+   +   +    NR   +  +   V + +      +T +  +G+
Sbjct: 234 TEIHTILRLPTGIFYANGVKANVIFFDNRPASKEVQTKDVWVYDMRTNQHFTLLTADGR 292


>gi|91203220|emb|CAJ72859.1| similar to type I restriction modification enzyme M chain
           [Candidatus Kuenenia stuttgartiensis]
          Length = 484

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 87/502 (17%), Positives = 172/502 (34%), Gaps = 71/502 (14%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGST 94
             L+ L+   +  ++A     + Y          E +    G        +         
Sbjct: 33  LFLKYLDDFEKDKKTAAELAGKYYEGIIDKQYKWEVWAVPKGKDGKIDHHKALTGDDLKD 92

Query: 95  NTRNNLESYIASF--SDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
              + L  Y+  F  S  +    E      FS    +++    L ++      +      
Sbjct: 93  FVDHKLFPYLKKFKTSAESADTIEYKVGEIFSELKNKIQSGYNLREVINRIDELRFR-SH 151

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                MS++YE+ I+  G        ++ TPR ++     ++          +P +   +
Sbjct: 152 AEKHEMSHLYENKIKNMG-NAGRNGGEYYTPRPLIKTIVKVV----------APTIGNKV 200

Query: 210 YDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           YD    + GFL +A  ++           +       +G+E +   + +    M++  +E
Sbjct: 201 YDGAVASAGFLAEAFEYLKTSKNLTTKDAETLQKRTFYGKEKKSLAYIIGTMNMILHGIE 260

Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                  + NI   +TL++   D+    R+   L+NPPFG K   +              
Sbjct: 261 -------APNIVHTNTLTENMADIQEKDRYDVILANPPFGGKERTEVQQNFPI------- 306

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  K  + + LFL H    L+     GG+A +V+ ++ L N    S    +R+ LL
Sbjct: 307 -------KTGETAFLFLQHFIKILK----AGGKAGVVIKNTFLSNTDNAS--VSLRKLLL 353

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E+  +  ++ LP   F    + T +         +     QL          R  G K  
Sbjct: 354 ESCNLHTVLDLPGGTFTGAGVKTVVLFFEKGVPTQNVWFYQL-------NLDRKLG-KTN 405

Query: 443 IINDDQRRQILDIYVSRENGKFSR-----MLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
            +N++   + +++  ++ N + S       +D  TFG   + V  P +      +     
Sbjct: 406 PLNENDLAEFVELQKTKANSENSWSVNVADVDKTTFG---LSVKNPHKKDEPALREPGII 462

Query: 498 LEADITWRKLSPLHQSFWLDIL 519
           L+      + S +     L IL
Sbjct: 463 LDEMKALDEESEMIFKNILRIL 484


>gi|331085651|ref|ZP_08334734.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406574|gb|EGG86079.1| hypothetical protein HMPREF0987_01037 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 687

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 144/419 (34%), Gaps = 56/419 (13%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             I ++    +L KI  +   I              ++YE+L+ +  +        F TP
Sbjct: 308 DAIFKVPTPLMLDKIVTSMDSIYEQMAQLKSADTRGDVYEYLLSKLATAG--VNGQFRTP 365

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------ 234
           R ++ +   ++           P     + DP CGT GFL  A  ++ +           
Sbjct: 366 RHIIRMMVEMM----------DPKADEIICDPACGTSGFLVSASEYLKETKKEEVFFNKQ 415

Query: 235 --KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                   + HG +++     +    M+   ++       +  I+   +LS      +++
Sbjct: 416 NKNHYMNHMFHGFDMDRTMLRIGAMNMMTHGVD-------NPYIEYRDSLSDQNSDKEKY 468

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF    + D  + +              + K     +LFL      L+     
Sbjct: 469 SLILANPPFKGSLDYDTVSADL-----------LKVCKTKKTELLFLALFIRMLK----I 513

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411
           GGR A ++    LF   +     +IR+ ++E + +EA++++P+ +F     ++T + I +
Sbjct: 514 GGRCACIVPDGVLF--GSSKAHKDIRKAIVEENRLEAVISMPSGVFKPYAGVSTAILIFT 571

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFS 465
                     V   +   +     +   KR  I ++    I++ +        R+  + S
Sbjct: 572 KT-GHGGTDNVWFYD---MKADGLSLDDKRTEIKENDIPDIIERFRNLDKEVDRKRTEQS 627

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             +  +        +                  +  +T  +   +     +D L+ ++ 
Sbjct: 628 FFVTKQEIADNGYDLSINKYKEIEYVPVEYPSSQEIMTDLRELEMKIGEEMDALEQLLG 686


>gi|295110205|emb|CBL24158.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus obeum A2-162]
          Length = 500

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 132/368 (35%), Gaps = 56/368 (15%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
              I +L    +L K+  +   I +  + +    +  ++YE+L+ +           F T
Sbjct: 120 DDAIFKLPTPLVLSKVVDSLDEIYIMMNEIQTADVRGDVYEYLLSKIAQSG--LNGQFRT 177

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +   ++           P     + DP CGT GFL  A  ++ +          
Sbjct: 178 PRHIIRMMVEMM----------DPSSDEVICDPACGTSGFLVAAGEYLKEKRKEEIFFDK 227

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                    + HG +++     +    M+   +++         I+   +LS       +
Sbjct: 228 QKKDHYMNHMFHGYDMDRTMLRIGAMNMMTHGIDNPF-------IEYRDSLSDQNQDKDK 280

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  + +              + K     +LFL      L+    
Sbjct: 281 YSLILANPPFKGSLDAESVSGDL-----------LKVCKTKKTELLFLALFLRMLK---- 325

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A ++    LF   +      IR+ ++EN  +EA++++P+ +F     ++T + I 
Sbjct: 326 IGGRCACIVPDGVLF--GSSKAHKSIRKEIVENQRLEAVISMPSGVFKPYAGVSTAILIF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464
           +          V   + T       +   KR    ++    I++ +        R+    
Sbjct: 384 TKT-EHGGTDNVWFYDMTADGL---SLDDKRVPTAENDIPDIIERFRNLDKEVDRKRTDK 439

Query: 465 SRMLDYRT 472
           S M+  + 
Sbjct: 440 SFMVPKQD 447


>gi|237653839|ref|YP_002890153.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625086|gb|ACR01776.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 512

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/432 (16%), Positives = 161/432 (37%), Gaps = 71/432 (16%)

Query: 35  ILPFTLLRRLEC--ALEPTRSAVREK----YLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           I     +RRL+    LE +++ + ++     +   G++    ++  +    F N +   +
Sbjct: 32  ITYLLFIRRLDDGHTLEESKATLLKRPMTNRIFPEGTDPKGRAYDDLRWSRFKNFAPAEM 91

Query: 89  STLGSTNTRNNLESYIAS---FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
             +   +    L +       +S + K     F        +   GLL K+      + +
Sbjct: 92  FEVVGEHVFPFLRTRGGDGSTYSHHMKD--ARF-------TIPTPGLLAKVVDMLDHVPM 142

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                      ++YE+++ +  +        F TPR ++ L   L           +P  
Sbjct: 143 E----DRDTKGDLYEYMLGKIAAAG--QNGQFRTPRHIIKLMVEL----------TAPAP 186

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAG 258
              + DP  GT GFL  A  ++ +            +     + HG + +     +    
Sbjct: 187 KDVICDPASGTCGFLVAAGEYLREKHPALFNDAPAREHFHHGMFHGYDFDNTMLRIGSMN 246

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           M +  ++       + +I+   +L++D     +++   L+NPPF    + +  A +    
Sbjct: 247 MALHGVD-------NPDIRYKDSLAQDHAGDEEKYSLILANPPFAGSLDYENTAKDL--- 296

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     L K     +LFL      L+     GGRAA+++    LF   +     E+
Sbjct: 297 --------LALVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKEL 342

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           RR ++E   ++A+++LP+  F     ++T + I +   +     +V   +   +    R+
Sbjct: 343 RRMIVEEQKLDAVISLPSGCFKPYAGVSTAILIFTKTDSG-GTDQVWFYD---MLADGRS 398

Query: 437 EGKKRRIINDDQ 448
              KR+ +  ++
Sbjct: 399 LDDKRQPLLPEE 410


>gi|168178056|ref|ZP_02612720.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC
           2916]
 gi|182670476|gb|EDT82450.1| type I restriction enzyme M subunit [Clostridium botulinum NCTC
           2916]
          Length = 485

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/497 (15%), Positives = 174/497 (35%), Gaps = 67/497 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F  ++ L+       +    + L      +       +    F N     +  + S    
Sbjct: 35  FLFIKDLDE--NEKLAESDAELLGIPFEGMFPSDRQYLRWSKFKNEEAGEMYRIVSQEVF 92

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             ++               D  F     ++    +L KI      +E+           +
Sbjct: 93  PFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNLEI----QDKDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ +   L+           P     + DP  GT 
Sbjct: 144 LYEYLLSKVATAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMGTA 191

Query: 218 GFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           GFL  A  ++ +  S               + +G +++     +    M++  ++     
Sbjct: 192 GFLVGAEEYLREKHSELFLVQGLKDHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD----- 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             + NI+   +LS+     +++   L+NPPF    + +  + +              + K
Sbjct: 247 --NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADL-----------LKVSK 293

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +EAI
Sbjct: 294 TKKTELLFLALFLRILKT----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLEAI 347

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           +++P+ +F     ++T + I +         KV   +         +   KR  I D+  
Sbjct: 348 ISMPSGVFKPYAGVSTAIIIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDNDI 403

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
             I++ + + +  +  +  +   F    + V      ++ L       +E +    ++  
Sbjct: 404 SDIIERFNNLDKEEDRKRTEQSFF----VPVDEIRENNYDLSINKYKEIEYE----EVVY 455

Query: 510 LHQSFWLDILKPMMQQI 526
                 L+ +K + ++I
Sbjct: 456 DEPKVILERVKKLEKEI 472


>gi|301057181|ref|ZP_07198312.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300448739|gb|EFK12373.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 326

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 132/362 (36%), Gaps = 63/362 (17%)

Query: 58  KYLAFGGSN-IDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLE---SYIASFSD 109
           +Y    G+      S + +    FY         L       +    ++     I  +  
Sbjct: 3   QYAKLKGTRREKPVSEIAIEKCGFYLPDHARYDHLLKLPEEQDIAKAIKKAMEAIEEYKP 62

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             K I    ++           +  ++ KNFS I   P+     +   IYE+ +  F   
Sbjct: 63  ELKGILPQDEYFRLTRT--DKSIPMQLLKNFSDI---PEDAAGDMFGQIYEYFLGNFAMA 117

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +G  +F TPR VV L   ++                T++DP CG+GG    +   +  
Sbjct: 118 EGQGGGEFFTPRSVVRLMVEIIEPHRG-----------TVFDPACGSGGMFVQSAKFIRR 166

Query: 230 CGSH-HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      L  +GQE   ET  +    + +  L  D        I+Q +T  +D F 
Sbjct: 167 HRHEMANGNGDLFVYGQEKTLETVKLAKMNLAVNGLRGD--------IRQANTYYEDPFE 218

Query: 289 GK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPK--------------IS 332
              +F Y L+NPPF       K       +     RF   G+P+              + 
Sbjct: 219 SFGQFDYVLTNPPFNVDDVSLK-------RVETDKRFNTYGIPRKKTKAKKKDQGNETVP 271

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + L++   A  L+      GRAA+V+++S      A   E+EIR+ L+ N+LI   + 
Sbjct: 272 NANYLWINLFATSLKPE----GRAALVMANSA---SDARHSEAEIRKTLIRNNLIYGTLT 324

Query: 393 LP 394
           LP
Sbjct: 325 LP 326


>gi|309800154|ref|ZP_07694340.1| type I restriction modification system M subunit [Streptococcus
           infantis SK1302]
 gi|308116201|gb|EFO53691.1| type I restriction modification system M subunit [Streptococcus
           infantis SK1302]
          Length = 485

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/501 (15%), Positives = 171/501 (34%), Gaps = 66/501 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNT 96
              ++ L+       +      +++ G     +   + +          +   L  +   
Sbjct: 35  LLFMKDLDRVELGRENDAEFLGISYEGIFPKDKPEYRWS----------TFKNLGDAQEV 84

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVM 155
              +   I  F  N K   +D  FS  +   + +      + K  + ++  P     + +
Sbjct: 85  YRLMSQEIFPFIKNLKGDTDDTAFSRYMKDAIFQINKPATLQKAIAALDELP--TDIKDI 142

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE+L+ +     +     F TPR ++ +   L+      +            DP  G
Sbjct: 143 GDIYEYLLSKLSQAGA--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMG 190

Query: 216 TGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + GFL  A  ++              K     + HG + +     +    M++  +E   
Sbjct: 191 SAGFLVSASRYLDRRKEEWQTNIDSVKHFHNTMFHGNDTDTTMLRLGAMNMMLHGVE--- 247

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +  I    +LS+D     ++   L+NPPF    + D  + +               
Sbjct: 248 ----NPQISYLDSLSQDNEEADKYTLVLANPPFKGSLDYDSTSGDL-----------LAT 292

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L+     GGRAA+++    LF   +      IR+ ++E+  ++
Sbjct: 293 IKTKKTELLFLALFLRTLKP----GGRAAVIVPDGVLF--GSSKAHKGIRQEIVEHHKLD 346

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A++++P+ +F     ++T + I +         KV   +   +     +   KR+ IN++
Sbjct: 347 AVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPINEN 402

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
               I+  +   E     +  D   F    + V       F L       +E +    + 
Sbjct: 403 DIPDIIQRFHQLEKEVDRKRTDQSFF----VPVDEIKENDFDLSINKYKEIEYEKVEYEP 458

Query: 508 SPLHQSFWLDILKPMMQQIYP 528
           + +      D+ K +   +  
Sbjct: 459 TEVILKKINDLEKEIQAGLAE 479


>gi|295112012|emb|CBL28762.1| Type I restriction-modification system methyltransferase subunit
           [Synergistetes bacterium SGP1]
          Length = 500

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 145/421 (34%), Gaps = 60/421 (14%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             I ++    +L KI     GI      +       ++YE+L+ +  +        F TP
Sbjct: 121 DAIFKVPTPLMLDKIVTAMDGIYEQMAQLNAADTRGDVYEYLLSKIATAG--VNGQFRTP 178

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------- 232
           R ++ +   ++           P     + DP CGT GFL    +++ +           
Sbjct: 179 RHIIRMMVDMM----------EPKADEIVCDPACGTSGFLVAVSDYLKENRKQEVFFNSQ 228

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           +       + HG +++     +    M+   +++         I+   +LS      +++
Sbjct: 229 NKDHYMNHMFHGYDMDRTMLRIGAMNMMAHGVDNPF-------IEYRDSLSDQNPDREKY 281

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF  K   D D V  +       R            +LFL      L++    
Sbjct: 282 TLILANPPF--KGSLDADIVSTDLLKVCKTR---------KTELLFLALFLRMLKV---- 326

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411
           GGR A ++    LF   + +    +R+ L+E + +EA++++P+ +F     ++T + I +
Sbjct: 327 GGRCACIVPDGVLF--GSSTAHKAVRKELIEGNRLEAVISMPSGVFRPYAGVSTAILIFT 384

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFS 465
                    KV   +         +   KR    ++    I+  +        R+  + S
Sbjct: 385 RT-GHGGTDKVWFYDMKADGY---SLDDKRSETKENDVPDIVARFHALDTEQDRKRTEQS 440

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILKPMM 523
             +           +              +          KL  L +     +D L+ ++
Sbjct: 441 FFVPKEEIVGNDYDLSLNKYRQTEY--KAVEYPPTSEIMAKLDELEREIGADMDALRELL 498

Query: 524 Q 524
           +
Sbjct: 499 E 499


>gi|255284466|ref|ZP_05349021.1| putative type I restriction-modification system, M subunit
           [Bryantella formatexigens DSM 14469]
 gi|255264976|gb|EET58181.1| putative type I restriction-modification system, M subunit
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 133/368 (36%), Gaps = 56/368 (15%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
              I +L    +L K+  +   I    + +    +  ++YE+L+ +           F T
Sbjct: 120 DDAIFKLPTPLVLSKVVDSLDEIYKMMNEIQIADVRGDVYEYLLSKIAQSG--RNGQFRT 177

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           PR ++ +   ++           P     + DP CGT GFL  A  ++ +          
Sbjct: 178 PRHIIRMMVEMM----------DPSSDEVICDPACGTSGFLVAAGEYLKENRKEEIFFDK 227

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                    + HG +++     +    M+   +++         I+   +LS       +
Sbjct: 228 QKKDHYMNHMFHGYDMDRTMLRIGAMNMMTHGIDNPF-------IEYRDSLSDQNPDKDK 280

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF    + +  + +              + K     +LFL      L+    
Sbjct: 281 YSLILANPPFKGSLDAESVSGDL-----------LKVCKTKKTELLFLALFLRMLK---- 325

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR A ++    LF   +     +IR+ ++EN  +EA++++P+ +F     ++T + I 
Sbjct: 326 IGGRCACIVPDGVLF--GSSKAHKDIRKEIVENQRLEAVISMPSGVFKPYAGVSTAIIIF 383

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKF 464
           +          V   + T       +   KR  I ++    I+  + +      R+    
Sbjct: 384 TKT-EHGGTDYVWFYDMTADG---FSLDDKRTPIAENDIPDIIGRFKNLDKETERKRTDK 439

Query: 465 SRMLDYRT 472
           S M+  + 
Sbjct: 440 SFMVPKQD 447



 Score = 37.6 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 632 GYEINFNRFF---YQYQPSRKLQDIDAELKGVEAQIATLLEEM 671
           GY+++ N++    Y         +I A+++ +E +I   ++E+
Sbjct: 452 GYDLSINKYKEIEYVPVEYPPTSEIMADIREIEREIGKEMDEL 494


>gi|224419061|ref|ZP_03657067.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253828001|ref|ZP_04870886.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313142569|ref|ZP_07804762.1| HsdM [Helicobacter canadensis MIT 98-5491]
 gi|253511407|gb|EES90066.1| type I restriction-modification system, M subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|313131600|gb|EFR49217.1| HsdM [Helicobacter canadensis MIT 98-5491]
          Length = 499

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 87/462 (18%), Positives = 170/462 (36%), Gaps = 73/462 (15%)

Query: 39  TLLRRLECALEPTRSAVREK---YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L+      +         Y +   S    +S+         +       +     
Sbjct: 32  LFLKFLDDYERELKDEAFLNDVPYASILDSQYAWQSWAAPKKDGKLDVKNALSGSDLLEF 91

Query: 96  TRNNLESYIASFSDN------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
             N L  Y+ SF +N      A  I   F+F     R+     L ++      +      
Sbjct: 92  VNNELFPYLKSFKNNEDFKSIAYKIGGIFEFID--NRIANGHTLREVINLIDELSFS-KE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                + ++YE L++  GS+    + +F TPR +V +   ++          +P     +
Sbjct: 149 SDVFALGDVYEKLLKDMGSDGG-NSGEFYTPRALVKVMVEVI----------NPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAG 258
           YDP CG+ GFL ++  H+                  +        G+E  P ++A+ V  
Sbjct: 198 YDPACGSCGFLVESFLHILYEDRAKGQKANLSVEELEFLQKDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  ++       S NI + +TLSK   D+   +R+   L+NPPFG K ++        
Sbjct: 258 MILHGIK-------SPNIIKTNTLSKRITDITESERYEVILANPPFGGKEKEQIQ----- 305

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                    G  +   +   +LFL H+   L+      GR AI++    LF     +   
Sbjct: 306 ---------GNFIVPSNATELLFLQHILKSLKT----NGRCAIIVPEGVLFQN--SNAFV 350

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT---EERRGKVQLINATDLW 431
           ++++ L+EN  +E +++LP+ +F   + + T +   S       +E+   V        +
Sbjct: 351 KVKQDLIENYNLECVLSLPSGVFLPYSAVKTNVLFFSKGLRGIVDEQDSNVYYYELIPPY 410

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
                   K + +     ++ L+ Y  R+    S ++     
Sbjct: 411 KLT-----KNKPLEYVHFKEFLECYKQRKITPHSYLVSLEEL 447


>gi|260425081|ref|ZP_05734132.2| type I restriction enzyme M protein [Dialister invisus DSM 15470]
 gi|260404084|gb|EEW97631.1| type I restriction enzyme M protein [Dialister invisus DSM 15470]
          Length = 561

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 92/543 (16%), Positives = 191/543 (35%), Gaps = 83/543 (15%)

Query: 28  HTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS-E 85
            +++   I+    L + L            E          DL +    + Y F   S  
Sbjct: 47  SSEYK--IITEVFLYKFLNDKFLYEVRQADEGLKNSTNIEADLSAMDDES-YDFLLASLP 103

Query: 86  YSLSTLGSTN------TRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYKIC 137
            + + L   +       R N + +   F D    I  +F+      +   E    L+   
Sbjct: 104 PTTAQLKKEHFISYLFNRKNTDKFNELFDDTLIDI-ANFNIDVFSVKTGSEDKIRLFDAI 162

Query: 138 KNFSGIELHPDTV-------------------PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             F                                  + ++E+LI+ +  +  +   ++ 
Sbjct: 163 SVFVTETNRRSDFCRAIIDKLVAFSFAEAFAQKYDFFAAVFEYLIKDYNKDFGK-YAEYY 221

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   +++               T+YDP  G+G  +    + + +         
Sbjct: 222 TPHSIASIIAKIMVPDGA--------QNVTVYDPAAGSGTLVLALAHEIGEDN------- 266

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292
               + Q++  +++       L   L  +       N+  G TL +     K      +F
Sbjct: 267 -CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGNVVHGDTLLQPEHLNKQKNGLMKF 320

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGS-----MLFLMHLANK 345
            Y +SNPPF   +  ++D +  E       RF  G+P             +LFL H+   
Sbjct: 321 DYIVSNPPFNMDFSDNRDTLAGE---KYKERFWAGVPNIPKKKKDSMDIYLLFLQHILFS 377

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G+A IV+ +  L    A   + +IR  ++   ++  ++++P+++F  T    
Sbjct: 378 LKDT----GKAGIVVPTGFLTT--ATGIQKKIREKIISEKMLRGVISMPSNIFATTGTNV 431

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYV-SRENGK 463
            +  L  +K +    KV L++A+ +   I+ +GK +R ++ D +  QI+  +    E   
Sbjct: 432 SIMFLDAQKQQ---DKVMLMDASSMGQKIKVDGKNQRTVLRDFEIEQIISTFNCEIETDD 488

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           FS M+        +  +      +F L    ++  E D   ++L  +     LD    + 
Sbjct: 489 FSVMVSLDQISKNKFSLSAGQYFTFKLPYVEISEAEFDKEMQRL-QIELGDELDAGAELN 547

Query: 524 QQI 526
           ++I
Sbjct: 548 KEI 550


>gi|295426377|ref|ZP_06819030.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM
           11664]
 gi|295063936|gb|EFG54891.1| type I restriction enzyme M protein [Lactobacillus amylolyticus DSM
           11664]
          Length = 537

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 186/477 (38%), Gaps = 63/477 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
           +  ++  V   F   + L             +       ++  + +         +++  
Sbjct: 29  EAGEYKLVTQSFL-YKFLNDKFLYEAKKYDSQNDYQHLMDLSDDDYEMTQLSLGTDSAVI 87

Query: 87  SLSTLGSTN-TRNNLESYIASFSDNAKAI-FEDFDF------SSTIARLEKAGLL----- 133
               L  T   + N++ +   F      I  ++ D        +T  RL  A L+     
Sbjct: 88  QRKDLIETIYNQQNVDDFSEVFDSALNDIALDNNDLFSVETAGNTQVRLFDAHLIADNIQ 147

Query: 134 ---------YKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
                     ++ K  +  +       +     S I+E++I+ +         ++ TPR 
Sbjct: 148 DGSQRDHVARELIKLLASTKFDNSIFDEGFDFFSTIFEYMIQDYNKNGGGNYAEYYTPRT 207

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +  +   +L         ++      +YDP  G+G  L +  N +               
Sbjct: 208 ISKIIADIL-------IGKAKPENVKVYDPAAGSGTLLMNVANRI--------GVDKCTV 252

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
           + Q++  ++     + +L   L  +       NI QG+T+  +    ++  Y +SNPPF 
Sbjct: 253 YSQDISQKS-----SNLLRLNLILNNLSHSIHNIVQGNTILNNKHP-EKMDYIVSNPPFK 306

Query: 303 KKWEKDKDAVEK-EHKNGELGRFGPGLPKISDGSM----LFLMHLANKLELPPNGGGRAA 357
             +   +D VE   + +       P +P     SM    LF+ H+ + L       G+A 
Sbjct: 307 LDFSDWRDQVESIPNSSEIYFAGIPKIPNKKKNSMAIYELFIQHIIHSLNDK----GKAG 362

Query: 358 IVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           +V+ +  L    A SG + +IR++L++N +I+ +V++P+++F  T     +   +  K +
Sbjct: 363 VVVPTGFL---TAQSGIDKKIRKFLVDNGMIDKVVSMPSNVFANTGTNVSVIFFNKVKQD 419

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
               +VQLI+A+ L   I+  G +R  ++ +  ++I+D  V R++   FS  +  + 
Sbjct: 420 ---DQVQLIDASKLGKKIKENGLQRTALSVEDIKKIVDTAVERKDVDDFSITVSLKD 473


>gi|146319439|ref|YP_001199151.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
 gi|145690245|gb|ABP90751.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
          Length = 300

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 110/315 (34%), Gaps = 48/315 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-----ALEPT------R 52
            + +  ++ N IW  A +L G+   +++   IL F   R L        +E         
Sbjct: 1   MSKTIQAITNQIWSMANELRGNMDASEYKNYILAFMFYRYLSEHQERFLVEDEIISPAPG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGS-----TNTRNNLESYIAS 106
             V++ Y      N  +E     A +  Y      + + L +         ++ ++    
Sbjct: 61  ETVQDAYAREAVGNDLVEHLENTASHLGYAIEPEDTWARLVAKIDNSEIVASDYQTIFDH 120

Query: 107 FSDNA----------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           F+ N           + +F D +   +    + + +A  L  I K    IE   D   D 
Sbjct: 121 FNANVELNRDAMEDFRGVFNDINLGDSRLGNSTVVRAKSLNSIVKLIDSIEYKNDEGKDI 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +  IYE+LI +F +   +   +F TP  V  +   ++    +           ++YDPT
Sbjct: 181 -LGEIYEYLIGQFAASAGKKGGEFYTPHQVSKILDKIVTLGLE-----KSDTSFSVYDPT 234

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L    N +            +  +GQE+   T+ +    +++ ++        +
Sbjct: 235 MGSGSLLLTVRNELPQ-------GQHIKFYGQEMNTTTYNLARMNLMMHQVGYSNMILNN 287

Query: 274 KNIQQGSTLSKDLFT 288
                  TL  D   
Sbjct: 288 A-----DTLESDWPE 297


>gi|254426343|ref|ZP_05040059.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
 gi|196187757|gb|EDX82723.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
          Length = 494

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/436 (18%), Positives = 150/436 (34%), Gaps = 59/436 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+  LE T+ +   K    G S              +        S       R
Sbjct: 35  LLFIKRLDD-LEVTKES---KARRLGRSVEQPTFAEDEQECRWSYFKNLDDSDKKLEIVR 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +    +I      A            +  +  A LL  +      I +           +
Sbjct: 91  DQAFPFIKQLGGEAADSPYARHMQDAVFLISSAALLDSVVTQIDQIPME----DRDTKGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+++ +  +        F TPR ++ L  AL+          +PG    + DP CGTG
Sbjct: 147 LYEYMLSKLSTAG--TNGQFRTPRHIIKLMVALM----------APGPNEIICDPACGTG 194

Query: 218 GFLTDAMNHVADCGSHHK-----------IPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GFL  A  +V D                      + HG + +     +    +++  +E 
Sbjct: 195 GFLIGAAEYVRDLKDGEGNDVLNAPGNLAHFNDGMFHGFDFDATMLRIGSMNLMLHGIE- 253

Query: 267 DPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                    I+   +LS+D     + F   L+NPPF    EK   A +            
Sbjct: 254 ------QPAIEARDSLSEDHAGVEEAFTMILANPPFKGSVEKSTIAKDL----------- 296

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                     +LF+      L+     GGRAA+++    LF   +      +R+ L+E  
Sbjct: 297 AKAISTKKTELLFMALFLRLLKK----GGRAAVIVPDGVLF--GSSKAHKGLRKLLVEAH 350

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++ ++++P+ +F     ++T + + +    E        +   D+     +   KR+ I
Sbjct: 351 KLDGVISMPSGVFKPYAGVSTAILMFTKVGVESGGSD--FVWFYDMAADGLSLDDKRQPI 408

Query: 445 NDDQRRQILDIYVSRE 460
            ++    IL  + SR+
Sbjct: 409 EENDIPDILARWQSRD 424


>gi|226947934|ref|YP_002803025.1| type I restriction modification system M subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226843533|gb|ACO86199.1| type I restriction modification system M subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 494

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/499 (15%), Positives = 181/499 (36%), Gaps = 71/499 (14%)

Query: 38  FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           F  ++ L+    L  + + +    + F G     + +++ +   F N     +  + S  
Sbjct: 35  FLFIKDLDDNEILAESDAELL--GIPFEGMFPSDKQYLRWSK--FKNEEAGEMYRIVSQE 90

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
               ++               D  F     ++    +L KI      +E+          
Sbjct: 91  VFPFIKDIHGDKQSAYSKYMSDAMF-----KIPTPLMLSKIVDAIDNLEI----QDKDTK 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +  +        F TPR ++ +   L+           P     + DP  G
Sbjct: 142 GDLYEYLLSKVATAG--TNGQFRTPRHIIKMMAELM----------KPTPEDIIVDPAMG 189

Query: 216 TGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A  ++ +  +               + +G +++     +    M++  ++   
Sbjct: 190 TAGFLVGAEEYLREKHNDLFLVQGLKDHFNNKMFNGFDMDRTMLRIGAMNMMLHGVD--- 246

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
               + NI+   +LS+     +++   L+NPPF    + +  + +              +
Sbjct: 247 ----NPNIEYKDSLSETNKDSEKYTLVLANPPFKGSLDYEAVSADI-----------LKV 291

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            K     +LFL      L+     GGR A ++    LF   +  G  +IRR +++N+ +E
Sbjct: 292 SKTKKTELLFLALFLRILKK----GGRCASIVPDGVLF--GSTKGHKDIRREIVDNNKLE 345

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           AI+++P+ +F     ++T + I +         KV   +         +   KR  I D+
Sbjct: 346 AIISMPSGVFKPYAGVSTAIIIFTKT-GTGGTDKVWFYDMKADGY---SLDDKRNPIEDN 401

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
               +++ + + +  +  +  +   F    + V      ++ L       +E +    ++
Sbjct: 402 DIPDMIERFNNLDKEEDRKRTEQSFF----VPVDEIRENNYDLSINKYKEIEYE----EV 453

Query: 508 SPLHQSFWLDILKPMMQQI 526
                   L+ +K + ++I
Sbjct: 454 VYDEPKVILERVKKLEEEI 472


>gi|298375501|ref|ZP_06985458.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19]
 gi|298268001|gb|EFI09657.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_19]
          Length = 558

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 181/491 (36%), Gaps = 80/491 (16%)

Query: 29  TDFGKVILPFTLLRRLECAL--EPTRSAVR-EKYLAFGGSNIDLESFVKVAGYSFYNTSE 85
           +++  ++    L +        E  R  +  E+       + + ++F +      ++   
Sbjct: 31  SEYK-IVTEMFLYKFFNDKFGYEAKRDKMYGERLSKAEKWDAEYDTFTEEEVEDLFSYLP 89

Query: 86  YSLSTLGSTNTRNNLESY--------------IASFSDNAK------------AIFEDFD 119
            S+  L   +T ++L ++              I   + NA              IF    
Sbjct: 90  ASVPRLKPEHTLSHLYNFTGKGDFSTLLDATLIDIANINADTFSVTTSGKSKVNIFSAIT 149

Query: 120 --FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
              +    R E A  L +   +F+   +  +       S I+EHL++ F +       ++
Sbjct: 150 TFVTDQQKRDEFAKSLMRNVASFNFEHVFIEKYDF--FSRIFEHLLKGFNNAGGGKYAEY 207

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR +  +   LL+  +  L         T YDP+ GTG  L    + + +        
Sbjct: 208 YTPRAIAQVMARLLVGDNADL------RGVTCYDPSAGTGTLLMALAHQIGE-------- 253

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRF 292
                + Q++  ++  +    +++     +       N+ QG+TL++   T      K+F
Sbjct: 254 DRCSIYSQDISEKSSEMLRLNLIL-----NSLSASLPNVVQGNTLTEPSHTELSGALKKF 308

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----------SMLFLMHL 342
            + +SNPPF   + + +D +       +  RF  G+P                + FL H+
Sbjct: 309 DFIVSNPPFKLDFPEYRDTLAA-----DTIRFWAGVPNKVKKINPEKPQMGIYLCFLQHV 363

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            N L+        A +V +       R       I + +++  ++   +++PT++F  T 
Sbjct: 364 INSLKDTGKS---AVVVPTGFITSKKRNNVVAYNILQKIVDEHIVCGCISMPTNVFATTG 420

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
               +             KV LI+A+ L    +    ++R + D++   I++ + ++E  
Sbjct: 421 TNVSVIFFDK---SATADKVILIDASKLGEEYKEGNNQKRRLLDNEIDLIVNTFRNKEVV 477

Query: 463 K-FSRMLDYRT 472
           + FS  + Y  
Sbjct: 478 EDFSVAVSYDE 488


>gi|188585422|ref|YP_001916967.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350109|gb|ACB84379.1| N-6 DNA methylase [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 621

 Score =  172 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/472 (19%), Positives = 167/472 (35%), Gaps = 102/472 (21%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            I++  E L G+ +  ++  VI P   ++ +                             
Sbjct: 5   HIFQLCEHLRGELQPEEYLDVIFPVLTIKHIS---------------------------- 36

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
                 +Y   + + + L ++    NL   +      A  + E                L
Sbjct: 37  -ETKSPYYIPEDATWNCLIASGL--NLVKRVEK----AIELIE-----------GNNYRL 78

Query: 134 YKICKNFSGIELHPDTVPDRVMS--------NIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
             +   F G  L    + + ++            + +I  F   + + +  + T   +  
Sbjct: 79  NNVLNIFPGKSLSDVNLYNFMLGIDEIQDHKQFLKTVIDHFSKRIGKASGVWHTSNTLNE 138

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L   L+   D            + YD T G    L +A       G        L  +GQ
Sbjct: 139 LIVRLIAPMDG-----------SFYDGTAGLCNTLIEASEFAEQEGGA------LQLYGQ 181

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPF 301
           E++P+  A+    ++               +++  +L   + T     K F Y   N PF
Sbjct: 182 EIDPKIWALGKINLI-------FNECHDVVLEREDSLRNPMTTEDNNLKTFDYIGMNIPF 234

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
           G      +D   +E +    GRF  G+P    G M F++H    L       G+AAIV+ 
Sbjct: 235 GL-----RDWGVEEARRDLFGRFRYGIPSKQHGDMAFILHALTSLNRS----GKAAIVVP 285

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
              LF G     E++IR  L+ ND+IE +V LP+ L   TNI   + IL+  K EE   K
Sbjct: 286 HGVLFRGGR---EAKIREKLINNDVIEGVVDLPSGLLAGTNIPVSIIILNKLKPEESTEK 342

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           + ++NA       ++   K   +  +    I++ Y+ ++    FS  ++   
Sbjct: 343 IFMVNA-------KDIEHKGFELPREDLDMIIEAYIRKDTIDGFSMWINRED 387


>gi|329955592|ref|ZP_08296500.1| putative type I restriction-modification system, M subunit
           [Bacteroides clarus YIT 12056]
 gi|328525995|gb|EGF53019.1| putative type I restriction-modification system, M subunit
           [Bacteroides clarus YIT 12056]
          Length = 560

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/491 (16%), Positives = 179/491 (36%), Gaps = 83/491 (16%)

Query: 29  TDFGKVILPFTLLRRLECAL--EPTRS-AVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85
           +++  ++    L +        E  R     E+       + + ++F +      ++   
Sbjct: 31  SEYK-IVTEMFLYKFFNDKFGYEAKRDPMYGERLSKAEKWDAEYDTFTEEEVEDLFSYLP 89

Query: 86  YSLSTLGSTNTRNNL------ESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKI- 136
           +S+  L   +T ++L        +          I       FS T +   K  + + + 
Sbjct: 90  HSVPRLKPEHTLSHLYNSATKGDFSTLLDATLVDIASLNAETFSVTTSGKSKVNIFFPLT 149

Query: 137 -------------------CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                                +F+  ++  +       S I+EHL++ F +       ++
Sbjct: 150 TYVTDTQKRDEFAKSLMRNVASFNFEDVFDEKYDF--FSRIFEHLLKGFNNAGGGKYAEY 207

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR +  +   LL+  +  L         T YDP+ GTG  L    + + +        
Sbjct: 208 YTPRAIAQVMARLLVGENTDL------RGVTCYDPSAGTGTLLMALAHQIGE-------- 253

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRF 292
                  Q++  ++  +    +++     +       N+ QG+TL++          ++F
Sbjct: 254 ERCTIFSQDISEKSSEMLRLNLIL-----NNFAASLPNVVQGNTLTEPSHKESNGVLRKF 308

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP----------KISDGSMLFLMHL 342
            + +SNPPF   + + +D +       +  RF  G+P                  F+ H+
Sbjct: 309 DFIVSNPPFKLDFPEYRDTLAS-----DTIRFWAGVPNAVKKVDPMKPKMAIYTCFIQHV 363

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            N L+      G+AAIV+ +   F       E  I + +++   +  ++++P+++F  T 
Sbjct: 364 LNSLKTT----GKAAIVIPTG--FITAKSGVEKRILQRIVDERWVYGVISMPSNVFATTG 417

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN- 461
               +             KV LI+A+ L    +    ++R + D +  QI++ + ++E  
Sbjct: 418 TNVSVIFFDK---SANHDKVILIDASKLGEEYKEGNNQKRRLRDFEIDQIVNTFQNKEAV 474

Query: 462 GKFSRMLDYRT 472
             FS  + Y  
Sbjct: 475 DDFSVAVTYDE 485


>gi|167851733|ref|ZP_02477241.1| N-6 DNA methylase [Burkholderia pseudomallei B7210]
          Length = 489

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 94/503 (18%), Positives = 163/503 (32%), Gaps = 71/503 (14%)

Query: 38  FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+  +     LE      R      L +     D E        +F N   + +L  
Sbjct: 34  LFFLKIFDDQETELELMHDGFRSPLPDRLRWRNWAADPEGITGDELLTFINDDLFPTLKD 93

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L +   R            NA+       F      ++   LL ++    + ++      
Sbjct: 94  LDADQQR------------NARGFVVREVFGDAYNYMKSGQLLRQVVNRINEVDF-NSQS 140

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                +++YE +++   S  +  A +F TPR V       +          +P +   + 
Sbjct: 141 ERHQFNDLYEKILKDLQSAGN--AGEFYTPRAVTQFMVDQV----------NPRLGERVL 188

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           DP CGTGGFL  A+ H+     H +          G E +   H +CV  ML+  ++   
Sbjct: 189 DPACGTGGFLACAIEHLKAQRKHVEDDAVLQNSIFGVEKKQLPHLLCVTNMLLHGIQVPS 248

Query: 269 RRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  I+  +TLS+   D          L+NPPFG   E            G    F 
Sbjct: 249 L------IRHDNTLSRPLVDYSNRDMMDVILTNPPFGGTEEP-----------GIENNFP 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + +  + + LFL+ +   L+      GRAA+VL    LF     S    I+  LL   
Sbjct: 292 ADV-RTRETADLFLVLIIELLKP----NGRAAVVLPDGTLFGEGVKS---RIKERLLAEC 343

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            +  IV LP  +F   T I T L   +           +        +  + +  +    
Sbjct: 344 NLHTIVRLPNGVFAPYTGIKTNLLFFTKGTPTRDIWYYEHPYPAGYKSYSKTKPIRIEEF 403

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
             +        +   E   F+  ++   F   ++ V       + LD+    R E +   
Sbjct: 404 VPE------KAWWGCEEDGFASRVES-EFA-WKVSVDALKASGYNLDQKNPHRAEEESHD 455

Query: 505 RKLSPLHQSFWLDILKPMMQQIY 527
                          + +  Q+ 
Sbjct: 456 PDELLAQYRRLTTEAQVLRDQLK 478


>gi|240047533|ref|YP_002960921.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae
           HRC/581]
 gi|239985105|emb|CAT05098.1| Type I restriction enzyme m protein [Mycoplasma conjunctivae]
          Length = 546

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/555 (16%), Positives = 200/555 (36%), Gaps = 80/555 (14%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  VI    L + +          V  +       +    +  +    S  N  + 
Sbjct: 26  DGNEYK-VITQVFLYKFINDKFGYEIKKVSPELNVADKWDESYANMSEEKRKSLLNRLKA 84

Query: 87  SLSTLGSTNTRNNL------ESYIASFSDNAKAI--------------------FED--F 118
            +  L   +  + L       ++   F    + I                    FE    
Sbjct: 85  DVPLLEPQHLISGLWNQQKKGNFAQIFDSTMEEIAAKNEAIFATETVHKTRIPIFEKLTI 144

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +  I R + A  L     NFS  E   +        +++E+L++ + +       ++ 
Sbjct: 145 YVTDDIKRSDFARALVDKLVNFSFEEALGEHYDFFA--DMFEYLLKDYNTNGGGKYAEYY 202

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ +  +   LL+                +YDP+ GTG  +    + +           
Sbjct: 203 TPQSIAKIMAKLLIGEQKEFNSIE------IYDPSAGTGTLVMALSHSI--------GID 248

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRF 292
               + Q++  +++ +    +++  L         +N  QG TL      S D  + ++F
Sbjct: 249 RCTIYTQDISQKSNKMLKFNLILNGL-----VSSLQNAIQGDTLTSPYHRSDDNKSLRQF 303

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM----LFLMHLANK 345
            + +SNPPF   + +      +E  +    RF  G+P        SM    LF+ H+ N 
Sbjct: 304 DFVVSNPPFKLDFSE-----TREKLSTMPERFWGGVPKVPPTKKDSMAIYTLFIQHVINS 358

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+   N  G+ AIV+ +   F       ES+I + +++  ++   V++P+++F  T    
Sbjct: 359 LK---NETGKGAIVIPTG--FITSKSGVESKILKRIVDEKIVYGCVSMPSNVFANTGTNV 413

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            +    N        KV LI+A+ L    ++   K+R + +     I++ + ++E+   F
Sbjct: 414 TVLFFDN---ARNHDKVILIDASKLGEDYKDGKNKKRRLTEKDIDLIINTFNNKESIADF 470

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKP 521
           S  + Y     +   +         +D   + + E +    K     Q ++ +   + K 
Sbjct: 471 SIAVSYDDIKEKNYSLSAGQYFDIKIDYVEITQEEFEAKMNKYQSELQKYFEEGDKLQKE 530

Query: 522 MMQQIYPYGWAESFV 536
           +M+Q+     ++  +
Sbjct: 531 IMEQLQNLKLSKKNI 545


>gi|237744713|ref|ZP_04575194.1| type I restriction modification system M subunit [Fusobacterium sp.
           7_1]
 gi|229431942|gb|EEO42154.1| type I restriction modification system M subunit [Fusobacterium sp.
           7_1]
          Length = 498

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/505 (17%), Positives = 190/505 (37%), Gaps = 60/505 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+   +  +   +EK LA    NID +            ++   L         
Sbjct: 35  LIFMKRLD---QEEQRKEKEKKLASIFGNIDEKFIFDEKHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  D+ +++F  +   + I ++    +L         I  +P  V D   
Sbjct: 92  IRNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVQDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++               K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKRNFRDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +  +++  +LS D      +   L+NPPF       K ++++   +  L R   
Sbjct: 258 ------TPKLKRIDSLSTDFNEENDYTLVLANPPF-------KGSIDESLLSNTLTR--- 301

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LF+      L+     GGR A+++    LF   A +    +R+ L+EN+ 
Sbjct: 302 -VVKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKNLRKELIENNQ 354

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +EA++++P+ +F     ++T + I +          V   + T       +   KR  I 
Sbjct: 355 LEAVISMPSGVFRPYAGVSTGILIFTKT-GNGGTDNVWFYDMTADGY---SLDDKRNPIE 410

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           ++    I++ + + EN K  +  D   F    +     +   + L       +  +    
Sbjct: 411 ENDIPDIIERFSNLENEKGRKRTDKSFF----VPKQEIVDNDYDLSINKYKEIVYEKVEY 466

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYG 530
           +   +      ++ K + +++    
Sbjct: 467 EEPEVILQKLEELSKSIDEKLKELK 491


>gi|262280000|ref|ZP_06057785.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202]
 gi|262260351|gb|EEY79084.1| N-6 DNA methylase [Acinetobacter calcoaceticus RUH2202]
          Length = 491

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 189/515 (36%), Gaps = 90/515 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTN 95
              L+ ++                      +L +   + G +F      ++      + +
Sbjct: 33  MLFLKVVDD------------------RENELATLALLEGQTFKSPIPEKFRWRNWAAND 74

Query: 96  ---TRNNLESYI-ASFSDNAKAI-FEDFD---------FSSTIARLEKAGLLYKICKNFS 141
              T + L+ +I        + +  E+ D         FS     ++  GL+ KI     
Sbjct: 75  EGMTGDELKDFIDNELFPALQNLAVENDDPRARVVQNVFSDAYNYMKSGGLIRKIINQIQ 134

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                  +       +IYE L+R    + ++ + +F TPR V      ++          
Sbjct: 135 KGFDFNKSKERHAFGDIYEQLLRDL--QAAKNSGEFYTPRAVTTFMAQIV---------- 182

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAG 258
            P +  ++ DP CGTGGFLT A+ H  +     +  +       +G E +P  H +C   
Sbjct: 183 DPQLGESVLDPACGTGGFLTSAIEHKRENYVQTAEDEKILQNSIYGIEKKPLPHLLCTTN 242

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  ++          I++ +TLS       T KR    L+NPPFG     ++  +EK 
Sbjct: 243 MILHGIDV------PVQIRRDNTLSYPLISWGTDKRVDVVLTNPPFGG---TEEQGIEKN 293

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +    R         + + LF++ +   L+      GRAA+VL    +F       ++
Sbjct: 294 FPSKFQTR---------ETADLFMVLIIQLLKAH----GRAAVVLPDGFMF---GEGIKT 337

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV--QLINATDLWT 432
            I+  L+E+  +  IV LP  +F   T+I+T +   +  K  E       QL      + 
Sbjct: 338 AIKEKLMEDCNLHTIVRLPKSVFAPYTSISTNILFFTKGKKTEHVWFYEHQLPQGVKAY- 396

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                  K + +   +   +   +    +G  SR+ + +     ++ +   +  ++ LD 
Sbjct: 397 ------NKTKPLQLKEFDTLKSWWGKESDGFASRIENQQA---WKVSLQDIIDRNYNLDI 447

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
               ++E DI   K            +  + QQ+ 
Sbjct: 448 KNPHQVEEDIKDPKELLAKYESLEAEVAKIRQQLK 482


>gi|254457532|ref|ZP_05070960.1| type I restriction-modification system, M subunit
           [Campylobacterales bacterium GD 1]
 gi|207086324|gb|EDZ63608.1| type I restriction-modification system, M subunit
           [Campylobacterales bacterium GD 1]
          Length = 484

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/507 (17%), Positives = 174/507 (34%), Gaps = 77/507 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+  LE  +    E         I  E       +S + T +     L       
Sbjct: 33  LFLKYLDD-LEKDKKTAAELTGKTYTDIIAPEY-----QWSVWATPKDKDGKLDHHKALS 86

Query: 94  -----TNTRNNLESYIASFSDNAK--AIFE-DFD--FSSTIARLEKAGLLYKICKNFSGI 143
                    + L  Y+  F  +A+     E      FS    R++    L ++      +
Sbjct: 87  GDDLKDFVDHKLFPYLKKFKADAESADTIEYKIGEIFSELKNRIQSGYNLREVINRIDEL 146

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                      MS++YE  I+  G        ++ TPR ++     ++          +P
Sbjct: 147 RFRTHA-EKHEMSHLYEDKIKNMG-NAGRNGGEYYTPRALIKTIVKVV----------AP 194

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGM 259
            +   +YD   G+ GFL +A  ++        +  +I      +G+E +   + +    M
Sbjct: 195 QIGDKIYDGAVGSAGFLVEAFEYLKHSKNLTTADTEILQKKTFYGKEKKSLAYIIGTMNM 254

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           ++  +E       + NI   +TL++   D+    R+   L+NPPFG K   +        
Sbjct: 255 ILHGVE-------APNIIHTNTLAENLADIQDKDRYDVILANPPFGGKERAEVQQNFPI- 306

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                        K  + + LF+ H    L+     GG+A IV+ ++ L N    S    
Sbjct: 307 -------------KTGETASLFIQHFVKILK----AGGKAGIVIKNTFLSNTDNAS--VS 347

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +R+ LLEN  +  ++ LP   F    + T +               QL          RN
Sbjct: 348 LRKLLLENCNLHTVLDLPGGTFTGAGVKTVVLFFEKGVPTRNVWFYQL-------NLDRN 400

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            G K   +N+    + +++  +   G+ S  +D  +    +       +     ++  L 
Sbjct: 401 LG-KTNPLNEKDLAEFVELQKTFATGENSWSVDVASI--DQNTYDLSAKNPNKKEEAALR 457

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMM 523
           + +  +   K      +  L  +  M+
Sbjct: 458 KPQEILEEMKALDEESAEILASILEML 484


>gi|32266922|ref|NP_860954.1| type I restriction-modification system [Helicobacter hepaticus ATCC
           51449]
 gi|32262974|gb|AAP78020.1| type I restriction-modification system [Helicobacter hepaticus ATCC
           51449]
          Length = 475

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/529 (19%), Positives = 192/529 (36%), Gaps = 70/529 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           S  ++   +W  A  L        + + +  L     L+      E  R ++ E   +  
Sbjct: 2   SEKAIVAKVWNFATILRDSGVS--YTEYVAQLSYLLFLKM-----ESERESIGE--HSKI 52

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            ++   E  + + G    +    +L+ L              + S+    +     ++  
Sbjct: 53  PTSCKWERLINLDGLELESAYNAALAQL--------------AKSEGVIGLV----YNDA 94

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             ++++   L K+             +   V   IYE L+ +  +E   GA  + TPR +
Sbjct: 95  QNKIKEPANLKKLFVLMDSETWL--GLNVDVKGAIYEGLLAKNATETKAGAGQYFTPRVL 152

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPIL 240
           +     L+                 + DP CGTGGFL  A   +          K     
Sbjct: 153 IDSIVGLM----------ELKPNMEVCDPACGTGGFLLSAYEAMKAQTKDKEEIKCLRNE 202

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G+++ P   ++C   + +  +  +             +LS+     +RF   L+NPP
Sbjct: 203 RLCGKDITPLVASLCAMNLYLHGIGGEGGIIEIG-----DSLSE--LGNRRFDRVLTNPP 255

Query: 301 FGKKWEKDKDAVEKEHK--NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           FGKK      A   + K    E  R        S+  + FL H+ N L+     GG+AA+
Sbjct: 256 FGKKSATKILAENGKVKSQKDEYNREDFFAT-TSNKQLNFLQHIMNLLK----IGGKAAV 310

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEE 417
           VL  + LF   AG    ++R+ LLE+  +  I+ LPT +F+   +   +        +E+
Sbjct: 311 VLPDNVLFEAGAG---EKVRKKLLEDFNLHTILRLPTGIFYAQGVKANVLFFDKVATSED 367

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFSRMLDYRTFGY 475
              KV + +      +  N       ++ +  R+    +   + EN K S      + G 
Sbjct: 368 STQKVWVYD----MRTNMNLSLVTSPLSAEHLREFESCFCVGAMENRKESERFRSFSIGE 423

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            + +    L + ++ D   L  LE   + + LS        + L+ + Q
Sbjct: 424 IKKRDKMNLDIFWLKD-ESLEDLENLPSPKDLSEQICISLKNALREIEQ 471


>gi|126463982|ref|YP_001045095.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126105793|gb|ABN78323.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 481

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/508 (21%), Positives = 173/508 (34%), Gaps = 87/508 (17%)

Query: 38  FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+ ++    ALE TR          + +     D E        SF N S +  L  
Sbjct: 33  MFFLKIIDDQDEALELTRDEYISPIPADMQWRAWAADPEGMTGDELLSFVNESLFPRLKN 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           L  T  R  +           + +FED ++F      ++   LL ++    +G++   + 
Sbjct: 93  LRPTAPRARV----------IRDVFEDAYNF------MKSGQLLRQVINKINGVDF-NNL 135

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
              +   +IYE L+     + +  A ++ TPR V       +           P     L
Sbjct: 136 TERQHFGDIYEQLLNDL--QNAGNAGEYYTPRAVTAFMVQQI----------DPRPGEIL 183

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT AM H+ D       H+          E +P  H +CV  ML+  +E 
Sbjct: 184 MDPACGTGGFLTCAMRHMRDRHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVEE 243

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    ++  +TL++        +R    L+NPPFG K            ++G    
Sbjct: 244 PHF------VRHDNTLARPLTSWTRDERVDIVLTNPPFGGKE-----------EDGIENN 286

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     +  + + LFL  +   L+     GGRAA+VL    LF       ++ ++  L+ 
Sbjct: 287 FP--TFRTRETADLFLALIIRLLKP----GGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +  IV LP  +F    +I T L                    T  W     EG+K  
Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPTTE---------TWFWEHRVPEGQKAY 388

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD-------KTGL 495
            +    R   L        G  SR          ++         + LD          L
Sbjct: 389 SMTKPIRLDHLAGCADWW-GGASREGRVEGPQAWKVSAEEIKARGYNLDIKNPHAEAEDL 447

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMM 523
              E  +     +    +     LK ++
Sbjct: 448 GDPEHLLAALDEAEAEVARLRAALKAIL 475


>gi|313207213|ref|YP_004046390.1| n-6 DNA methylase [Riemerella anatipestifer DSM 15868]
 gi|312446529|gb|ADQ82884.1| N-6 DNA methylase [Riemerella anatipestifer DSM 15868]
 gi|315022985|gb|EFT36006.1| type I restriction enzyme M protein [Riemerella anatipestifer
           RA-YM]
 gi|325335341|gb|ADZ11615.1| Type I restriction-modification system methyltransferase subunit
           [Riemerella anatipestifer RA-GD]
          Length = 515

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/539 (15%), Positives = 175/539 (32%), Gaps = 84/539 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L++L+      +    E+     G++   + +         N   +S          
Sbjct: 35  LIFLKQLDD-----KQTTIEEEKTLFGASNHKDIYASEQ-----NELRWSFFKDKDPEVM 84

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIAR---------------LEKAGLLYKICKNFSG 142
            ++ +      DN       FDF  T+                 +    LL ++ +    
Sbjct: 85  FDIFTKPNPEIDN----LTAFDFMKTLGAVGGKFSEYMKGATFMIPTPNLLDRVVQQIDK 140

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           + L+          ++YE+++ +           F TPR ++ +   L+           
Sbjct: 141 LPLN----RRDTKGDLYEYMLSKIAEAG--TNGQFRTPRHIIRMMVELM----------Q 184

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVC 255
           P    T+ DP  GT GFL     ++ +            +     + HG E++P    + 
Sbjct: 185 PQQEDTVCDPAMGTAGFLVATGEYLHERHQDWFLDKTFRRHFSEDMFHGIEIDPSMMRIA 244

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              + +  +E       S NI  GS L++      ++   L+NPPF      D+      
Sbjct: 245 SMNLQLHGIE-------SPNITGGSALAESNTITGKYSLILANPPFKGALNYDEVESSL- 296

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                       + K     +LFL  +   L+     GGRAA+++    LF     +   
Sbjct: 297 ----------LQVTKTKKTELLFLSLILRMLK----LGGRAAVIVPDGVLF--GNSTAHK 340

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTS 433
            IR+ L+EN  ++ ++++P+ +F     ++T + + +   T     KV   +  TD ++ 
Sbjct: 341 NIRKELIENHQLQGVISMPSGVFKPYAGVSTAILLFTKTNTG-GTEKVWFYDMTTDGYSL 399

Query: 434 IRNEGKK-RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                 K      +        I            +        ++   R  + SF++ K
Sbjct: 400 DDKRTAKITNEQLEACFDTPEQIQSEVAEHCDIPRILTDWRNIDKVGTDR-TQKSFLVAK 458

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
             +   + D++  +   +    +  I       I          ++       K L  K
Sbjct: 459 ADIVANDYDLSINRYKEI---VYETIAYETPSAIITQIKDLQTQRQQAMEALEKMLNAK 514


>gi|297570526|ref|YP_003691870.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926441|gb|ADH87251.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 498

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 91/539 (16%), Positives = 170/539 (31%), Gaps = 81/539 (15%)

Query: 10  SLANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLEC------ALEPTRSAVREK 58
           +++  I    + +  D          G+  L     L+  +         +    +   +
Sbjct: 2   TISTTIKSIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDDREVEWELFDDHYRSPIPE 59

Query: 59  YLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            L +     D E         F  NT    L  L                 D+ + +   
Sbjct: 60  PLRWRNWAADPEGITGEELKDFIDNTLFPGLQNLQPRG-------------DDYRGVVIR 106

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             F      ++   LL ++                  +  +YE +++   S  +  A +F
Sbjct: 107 SVFEDAYNYMKSGQLLRQVINKLQEGVNFNKAGERHELGGVYEQILKDLQSAGN--AGEF 164

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHH 234
            TPR V       +           P +  T+ DP CGTGGFLT A+ H  +        
Sbjct: 165 YTPRAVTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKRNHYVQTPQD 214

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKR 291
           +        G E +P  H + V  +++  +E          I+  + L++        +R
Sbjct: 215 EAILQRSILGVEKKPLPHLLAVTNLILHGIE------NPDQIKHDNALARPLISWGPKER 268

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               ++NPPFG     ++D +E         R      + +D   LFL    + L+    
Sbjct: 269 VEVIVANPPFGG---MEEDGIETNFPQAFRTR------ETAD---LFLTLFIHLLKPR-- 314

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWI 409
             GRAA+VL    LF        + ++  LL    +  IV LP  +F  + T I T L  
Sbjct: 315 --GRAAVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLF 368

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            +     E             +        K + +   + +  +D +    +G  +R   
Sbjct: 369 FTKGAPTEAVWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFAARRET 423

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
            R     ++   +    ++ LD       E      +            ++ +  Q+  
Sbjct: 424 ERA---WKVPAEQIKARNYNLDIKNPYAAEQQNHDPEQLLARYHQQQSEIQQLRDQLKE 479


>gi|260438000|ref|ZP_05791816.1| type I restriction-modification system, M subunit [Butyrivibrio
           crossotus DSM 2876]
 gi|292809479|gb|EFF68684.1| type I restriction-modification system, M subunit [Butyrivibrio
           crossotus DSM 2876]
          Length = 475

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/467 (16%), Positives = 153/467 (32%), Gaps = 85/467 (18%)

Query: 1   MTEFT-GSAASLANFIWKNAEDLWGDFKHTD--FGKVILPFT---LLRRLECALEPTRSA 54
           MTE    + ++L   +   A             F   I   T    L+      +  +  
Sbjct: 1   MTENQIKTESALIKKVGDIANV----MAAAGVGFTDYITQLTYILFLKM-----DEEKEE 51

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA- 113
           +                     G        Y    L + N  + +E Y     + AK  
Sbjct: 52  M---------------------GLESTIPDGYKWKDLVNLNGTDLIEKYEEILRELAKEE 90

Query: 114 -IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +     F+    +++    L KI +       +   +   +   IYE ++ + G +   
Sbjct: 91  GLIGTI-FTKAANKIDSPVKLAKIIEMVKSENWYM--MEGDLKGAIYESILEKNGQDKKS 147

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
           GA  + TPR ++     +            P +  T+ DP CGT GFL  A  H+     
Sbjct: 148 GAGQYFTPRALIQAMVDV----------TDPQITETVADPACGTAGFLLAAYEHMKKQAK 197

Query: 233 HHK---IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
           +             G +  P    +    + +  +        +  I    +L     + 
Sbjct: 198 NSNQLTNLKNNALFGADNTPLVVTLASMNLYLHDI-----GTHTSPIVCQDSLLD--TSD 250

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K +   L+NPPFG + +   +                   K SD  + FL H+ + ++  
Sbjct: 251 KMYDVILANPPFGTRPQGSGEVSAVRSDFI----------KTSDNQVNFLQHIMSIVKT- 299

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGR A+VL  + L +G A    +++R  LL++  +  I+ LPT +F+   + T +  
Sbjct: 300 ---GGRVAVVLPDNVLTDGNAT---AKVREKLLKDFNLHTILRLPTGIFYANGVKTNVLF 353

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
                  E    + + +    +         ++ +  +     +  Y
Sbjct: 354 FEKGSPTE---DIWVYD----YRIGIKHTLVQKPLTREHLDDFVSCY 393


>gi|197334342|ref|YP_002156837.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
 gi|197315832|gb|ACH65279.1| type I restriction-modification system, M subunit [Vibrio fischeri
           MJ11]
          Length = 485

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 164/473 (34%), Gaps = 82/473 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ L+  LE +R+   E      G  ID +            T E     L   +  
Sbjct: 32  MLFLKYLDD-LEHSRALEAEMLGEQYGYIIDRDFRWSTWAAPKKATGELDDDALTGEDLM 90

Query: 98  N----NLESYIASF-----SDN-----AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                 L  Y+  F     S N        IF +        +++    L    +    +
Sbjct: 91  EFVDGELFPYLKGFKQRAESPNTIEYKIGEIFGEIK-----NKIQSGYSLRDALEKVDNL 145

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                      +S++YE  I+  G        ++ TPR ++     ++           P
Sbjct: 146 RFR-SQEEKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIDVI----------QP 193

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------PILVPHGQELEPETHAVC 255
            + +T+YD   G+ GFL +A +++   G+  K               + +E +   + + 
Sbjct: 194 KIGQTIYDGAAGSAGFLCEAFDYLRKGGAEKKKLTTAELDTLQKRTFYAKEKKSLAYVIA 253

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           +  M++  +E       + N+   +TL++   DL   +R+   L+NPPFG K  K+    
Sbjct: 254 IMNMILHGIE-------APNVVHTNTLAENIKDLQDSQRYDIVLANPPFGGKERKEVQMN 306

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                            K  + + LFL H    L      GG+AAIV+ ++ L N  A  
Sbjct: 307 FPI--------------KTGETAFLFLQHFIKTLRP----GGQAAIVIKNTFLSNSDAT- 347

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
               +R+ LL+   +  ++  P   F    + T +   +  +   +    +L        
Sbjct: 348 ---AVRKELLQTCNLHTVLDCPAKTFLGAGVKTVVLFFTKGEPTTKTWFYEL-------D 397

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRP 483
             R+ G K   +ND    + + +  ++ +   S  +           + V  P
Sbjct: 398 PGRSLG-KTNPLNDKDLAEFVTLQKTKADSDKSWSVTTSELDQTTWDLSVKNP 449


>gi|118466595|ref|YP_884147.1| type I restriction-modification system, M subunit [Mycobacterium
           avium 104]
 gi|118167882|gb|ABK68779.1| type I restriction-modification system, M subunit [Mycobacterium
           avium 104]
          Length = 495

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 166/484 (34%), Gaps = 72/484 (14%)

Query: 5   TGSAASLANFIWKNAEDLW------GDFKHTDFGKVILP----FTLLRRLECALEPTRSA 54
           T   A LA  I    + +       GD          +P       L+  +  LE  R  
Sbjct: 13  TSPQAKLAAVIKSARDYMRKDAGLNGDLDR-------IPQLAWLLFLKAFDG-LEENREI 64

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
             E +     +      +           +  +L T  +      L     + S + + +
Sbjct: 65  TEENFRPAIEAPYRWRDWAADPNGR----TGDALLTFVNNELLPYLRGLSGTGSHDPRDV 120

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F  T  R+    LL  +    + I     +     M+++YE ++R         +
Sbjct: 121 LAAV-FKETYNRMLSGYLLRDVVNKVNEINFA-SSDDIHTMAHLYESMLREMRDAAG-DS 177

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGS 232
            +F TPR ++      +           P +   + DP CGTGGFL +A+ H+      +
Sbjct: 178 GEFYTPRPIIRFIVQQV----------DPRLGEVILDPACGTGGFLVEALEHLSPKVTTT 227

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TG 289
                      G E +P    + +  +++  +          NI +G+ L++ +      
Sbjct: 228 AQLRALHENLRGIEKKPLPFLLGMMNLVLHGV-------GQPNITRGNALAESITQISKA 280

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +R    L+NPPFG +   ++ +++      +           ++ + LFL  +   L+  
Sbjct: 281 RRVDVILTNPPFGGE---EEKSIQANFPADKQ---------TAETAWLFLQLVIRMLKD- 327

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408
              GGR  IV+ +  LF G  G   + I++ LL    +  IV LP   F   T+I + L 
Sbjct: 328 ---GGRCGIVVPNGLLFGGGVG---ARIKKQLLTECNLHTIVRLPDGAFAPYTDIPSNLL 381

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                   +     ++          R +  K + +  ++       + +R   + +  +
Sbjct: 382 FFDKTGRTKEIWYYEISPPEG-----RKKYSKSKPMRFEEFADCQVWWSNRVENERAWRV 436

Query: 469 DYRT 472
               
Sbjct: 437 PIAD 440


>gi|313675493|ref|YP_004053489.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126]
 gi|312942191|gb|ADR21381.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126]
          Length = 524

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/577 (15%), Positives = 199/577 (34%), Gaps = 80/577 (13%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECA--LEPTRSAVR 56
           TG   S  + IW+       A  L    +   +         LRR++    LE  ++ + 
Sbjct: 3   TGELKSQVDKIWESFWTGGIANPL-TVIEQFTY------LLFLRRMDERQQLEERKANMI 55

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDNAKA 113
            + +     + + +         F N    ++  L +  T      +  ++     +   
Sbjct: 56  GEPIENPIYSDEHKELR---WSHFSNVDPNTMFDLFTKTTEKRPLTVFEHMKQIGASV-G 111

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +F +F        +    LL  + +    I++           ++YE+++ +     +  
Sbjct: 112 VFGEF-MKGATFMIPTPKLLDTVVQMIKKIQMD----DRDTKGDLYEYMLSKVA--SAGQ 164

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TPR ++ +   ++           P    T+ DP+CGT GFL  A  ++ D    
Sbjct: 165 NGQFRTPRHIIRMMVDMV----------EPNETDTICDPSCGTAGFLVAAGEYLHDMHPD 214

Query: 234 -------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   +     +  G E +     +    + +  +E +P+     ++ +G++  K  
Sbjct: 215 WFNDKKFREHYNKEMFTGMEFDSTMLRIGAMNLQLHGIE-NPQLIGVDSLSEGNSNIK-- 271

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              ++F   L+NPPF  K   D D V+    N         + K     +LFL  +   L
Sbjct: 272 ---EKFSLVLANPPF--KGSLDYDGVDDALLN---------IVKTKKTELLFLALMLRTL 317

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405
           +     GGR A+++    LF   +     EIR+ ++E + ++A++++P+ +F     ++T
Sbjct: 318 KT----GGRCAVIIPDGVLF--GSSKAHKEIRKEIIEKNKLDAVISMPSGVFKPYAGVST 371

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII--NDDQRRQILDIYVSRENGK 463
            +   +          V   +         +   KR ++   ++  +       + E   
Sbjct: 372 AILFFTKT-GTGGTDNVWFYDMKADGY---SLDDKRSLLVNTEEFEQCFTAPEKAVEKAS 427

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI---TWRKLSPLHQSFWLDILK 520
                D      R   V  P+R           +         + ++        ++  K
Sbjct: 428 IRDKCDIADILLRWDTV-NPMRHEKEASPEKDRKRTDQSFLVPFEEIKANDWDLSINRYK 486

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
            +  +   Y   +  + +  + +  +T  +   K  +
Sbjct: 487 EIEYEEVEYDAPKDIIADIEQLDADRTKALNLLKEVL 523


>gi|218441052|ref|YP_002379381.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218173780|gb|ACK72513.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 503

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 99/545 (18%), Positives = 181/545 (33%), Gaps = 87/545 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHT--DFG---KVILPFTLLRRLEC---ALEPTRSAVRE 57
            +   L ++I    + +          +      IL    L+ L+           AV +
Sbjct: 11  TTQQGLNSYIKNICDIMRRSNCAGALQYVPELSWIL---FLKILDDTEQREAEEAEAVGD 67

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK----- 112
           ++            +    G          +         + +  Y+    D  +     
Sbjct: 68  RFDDSIAEPYRWRDWAAPQGTQRLKLQMGEMGKFIP-FVNDEVIPYLKGLKDKPRATPRQ 126

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            I  +   +    R++    L  I      I+   DT     +S +YE L+ + G + + 
Sbjct: 127 KIISEVMSNVERVRIDSEANLLDILDKVHEIDYI-DTTHIFPISQVYEGLLLKMGEKNN- 184

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TPR++V     ++          +P +   +YDP CGTGGFL  +  ++ D   
Sbjct: 185 DGGQFFTPREIVRAMIKII----------NPKVGEKIYDPACGTGGFLAQSYEYIRDNLG 234

Query: 233 HH------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---- 282
                   +   +   +G+E E   + + +A +++  ++         ++  G+TL    
Sbjct: 235 DDITPEQLEPLKLNTFYGREKENLIYPIALANLVLHGIDL-------PHLWHGNTLNGEV 287

Query: 283 -SKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              DLF      F   L+NPPFG K  K   A            F     K S   +LFL
Sbjct: 288 TYGDLFKDAPPLFDIILTNPPFGGKEHKTVQAQ-----------FDY---KTSATQVLFL 333

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            H+   L      GGR  IVL    LF         + +R LL +  +  I++LP   F 
Sbjct: 334 QHVIKSLAP----GGRCGIVLDEGVLFRTN-EKAFVQTKRKLLNDCNLYCIISLPAGTFK 388

Query: 399 -FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
                +   +   S  +  E   K+   + +D+         KR+ +N     +   ++ 
Sbjct: 389 AAGGGVKANILFFSKGEPTE---KIWYYDLSDI------SVTKRKPLNLSDFEEFFKLFP 439

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           SRE    S  +            +                 E   T ++L  L +S   +
Sbjct: 440 SREESDKSWTITREE--------IEAKNFDLKAVNPNAQSFEDKSTPKELLDLIESKGKE 491

Query: 518 ILKPM 522
           +   +
Sbjct: 492 VAGAL 496


>gi|238810195|dbj|BAH69985.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 560

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 98/606 (16%), Positives = 219/606 (36%), Gaps = 110/606 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG-------DFKHTDFGKVILPFTLL-RRLECALEPTR 52
           MT FT    ++ + I    +DL G            +  ++++    L + L        
Sbjct: 10  MTNFTKLENNIKSII----DDLKGLCSTNGLSNTAGE--EIVVTSVFLYKFLNDKF---- 59

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNLESYIA----- 105
             +          N+  E  +K + Y   FY+     ++        + L  YI      
Sbjct: 60  --ISNLKKFAKELNVPFEEIIKNSNYMDGFYDAYPQDVAFKYEDTI-DYLVGYINEDDFY 116

Query: 106 -SFSDNAKAIF-----EDFD--------------FSSTIARLEKAGLLYKICKNFSG--I 143
             F D    I      E F+               S+ +   ++      +    +    
Sbjct: 117 QKFDDTLIRISDYKQNEAFNVDTAEGTKKPLFVRLSTFVEPSKRNNFTKNVFSYITRDRF 176

Query: 144 ELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +       +    S I+E+LI  +     +   ++ TP+ +      +L+          
Sbjct: 177 DFGEAFNNNYDFFSTIFEYLISDYNIASGK-YAEYFTPQTLSKAIGEILV-----KMSPI 230

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              I  +YDP+ G+G  +     H+A+     K       + Q++  ++       ML+ 
Sbjct: 231 EDKIYEIYDPSAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLN 286

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWEKDKDAVE 313
            L+     +   NI +G TL       K         +F +  SNPPF   +   +D +E
Sbjct: 287 GLK-----ESLDNIIEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIE 341

Query: 314 KEHKNGELGRFGPGLP--KISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
              +N E  RF  G+P    +        +LF+ H+   L+     GG+AAIV+ +   F
Sbjct: 342 LMWQNTE--RFFAGIPKVPKTKKDSMAIYLLFIQHILYSLKE----GGKAAIVVPTG--F 393

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                  E  IR+++++   ++ ++++P+++F  T     +  +         G+V L++
Sbjct: 394 ITAQSGIEKTIRQYIIDRKWLKGVISMPSNIFANTGTNVSVLFIDK---TNTNGEVLLMD 450

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLR 485
           A+ +    + +  ++ ++  D+  +I++ +V+ +    F+            +   +   
Sbjct: 451 ASKMGHKEKVKDLQKTVLTHDELNKIVNDFVNHKVEDDFTI----------SVTYDQIKE 500

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            ++ L       ++ +        + Q  +  ++    +++  +   ++   +   S   
Sbjct: 501 RNYSLSAGQYFEVKIE-----YVDITQEEFDKMIDDFNKELEQF-TKDTEEFQKEMSKTL 554

Query: 546 KTLKVK 551
           K LK+K
Sbjct: 555 KELKLK 560


>gi|291528113|emb|CBK93699.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 545

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 82/539 (15%), Positives = 198/539 (36%), Gaps = 86/539 (15%)

Query: 28  HTDFGKVILPFTLL-RRLECAL--------EPTR--SAVREKYLAFGGSNIDLESFVKVA 76
            +++   I+    L + L            E  +    V +        + ++   +   
Sbjct: 30  SSEYK--IITEIFLYKFLNDKFIYEVQQADEELKNSENVEQALNIMSEDDYEMLMMLLPP 87

Query: 77  -----------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFS------DNAKAIFEDFD 119
                       Y F + ++   + L  +   +   + +  FS      D  + +F+   
Sbjct: 88  ATAKLKREHFISYLFNHKNDEKFNELFDSTLWDISNTNLDVFSVSTGSGDKIR-LFDQNL 146

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFM 178
             +      ++     +                    + I+E+LI+ +  +  +   ++ 
Sbjct: 147 SQNVTESNRRSDFCKAMIDKLVTFSFAEAFSQKYDFFATIFEYLIKDYNKDFGK-YAEYY 205

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   +++               T+YDP  G+G  +    + + +         
Sbjct: 206 TPHSIASIIARIMVPEGV--------QNVTVYDPAAGSGTLVLALAHEIGESN------- 250

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292
               + Q++  +++       L   L  +       ++  G TL       +      +F
Sbjct: 251 -CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGLMKF 304

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANK 345
            Y +SNPPF   +  ++D +     +    RF  G+P + + +        +FL H+   
Sbjct: 305 DYIVSNPPFNVDFSDNRDTL---AGDIYKERFWAGVPNVPNKNKDSMAIYQMFLQHIIFS 361

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++     GGRAA+V+ +  L  G       +IR  ++E+ ++  +V++P+++F  T    
Sbjct: 362 MK---ENGGRAAVVVPTGFLTAGTRI--PKKIRERIVEDRMLRGVVSMPSNIFATTGTNV 416

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRE-NGK 463
            +  L N K  E+     L++A+ L T I+ +GK +R +++ ++   I+D + + E    
Sbjct: 417 SVLFLDNSKKYEQA---ILMDASKLGTKIKVDGKNQRTVLSPEEIENIIDTFNNFETKDD 473

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDILKP 521
           FS ++D     Y +I+  +    +    +  +  +E     ++K    +     ++   
Sbjct: 474 FSVVVD-----YDKIEQKKCSFSAGQYFEVKIEYVELTQEEFQKKMDGYTEKLTELFAE 527


>gi|94267247|ref|ZP_01290823.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93452077|gb|EAT02763.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score =  170 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 88/534 (16%), Positives = 167/534 (31%), Gaps = 73/534 (13%)

Query: 11  LANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGGS 65
           ++  I    + +  D          G+  L     L+  +      R    E +     S
Sbjct: 3   ISTTIKAIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDD-----REVEWEMFDDAYRS 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122
            I      +            +   L      N L   + +      + + +     F  
Sbjct: 56  PIPEPLRWRNWAAD---PEGMTGEKLK-DFIDNTLFPGLQNLQPQGDDYRGVMIRSLFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++                  +  +YE +++   S  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKLQEGINFNKAGERHELGGVYEQILKDLQSAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V       +           P +  T+ DP CGTGGFLT A+ H           +    
Sbjct: 170 VTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKRKHYVKTPQDEATLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +   H + V  +++  +E          I+  + L++        +R    +
Sbjct: 220 RSILGVEKKSLPHLLAVTNLILHGIE------NPDRIKHDNALARPLISWSPKERVEVIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E         R      + +D   LFL    + L+      GRA
Sbjct: 274 ANPPFGG---MEEDGIETNFPQAFRTR------ETAD---LFLTLFIHLLKPR----GRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK 414
           A+VL    LF        + ++  LL    +  IV LP  +F  + T I T L   +   
Sbjct: 318 AVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGA 373

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             E             +        K + +   + +  +D +    +G  +R    +   
Sbjct: 374 PTEAIWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFTARRETEQA-- 426

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             ++ V +    ++ LD       E      +            ++ +  Q+  
Sbjct: 427 -WKVPVEQIKARNYNLDIKNPYAAEQQNHDPEQLLADYHQQQSEIQQLRDQLKE 479


>gi|193212615|ref|YP_001998568.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327]
 gi|193086092|gb|ACF11368.1| N-6 DNA methylase [Chlorobaculum parvum NCIB 8327]
          Length = 488

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 125/307 (40%), Gaps = 42/307 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++            +    + ++IYE L+    S  +  A ++ T
Sbjct: 110 FEDAYNYMKSGTLLRQVINIIEEDVDFNTSGDRHLFNDIYEKLLADLQSAGN--AGEYFT 167

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIP 237
           PR V      +L           P +  +L DP CGTGGFLT A+ H+ +       +  
Sbjct: 168 PRAVTQFMVDML----------DPQLGESLLDPACGTGGFLTCAIEHLNEQVKTVDDREK 217

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHY 294
                HG E +P  H + V  M++  ++         NI+  +TLS   KD     R   
Sbjct: 218 IQESLHGVEKKPLPHMLAVTNMMLHGIDV------PTNIRHDNTLSRPLKDYSPKDRVDL 271

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPPFG     ++D +EK        R      + +D   LF+  + + L+      G
Sbjct: 272 IITNPPFGG---MEEDGIEKNFPRQYQTR------ETAD---LFMALIMHLLKPDT---G 316

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           +AA+VL    LF        + +++ LLE+  +  IV LP  +F   T+IAT +      
Sbjct: 317 KAAVVLPDGFLFGEGVK---TTLKKELLESFDLHTIVRLPKGVFSPYTSIATNILFFKKG 373

Query: 414 KTEERRG 420
              +   
Sbjct: 374 GPTKEVW 380


>gi|118578795|ref|YP_900045.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
 gi|118501505|gb|ABK97987.1| N-6 DNA methylase [Pelobacter propionicus DSM 2379]
          Length = 488

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 82/394 (20%), Positives = 141/394 (35%), Gaps = 57/394 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E         Y +   S     S+ K       N    +   L      
Sbjct: 33  LMFLKIFDDK-EQEWQLTVPGYKSPLPSRFRWSSWAK-------NPEGMTGEELI-DFVN 83

Query: 98  NNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           N+L   +   +  A  +          F      ++   LL ++            +   
Sbjct: 84  NDLFPALKKLATAA-GVSPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDR 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  +  A ++ TPR V      +L           P + +T+ DP
Sbjct: 143 HLFNDIYEKILSDLQSAGN--AGEYYTPRAVTRFMVDML----------DPQLGQTILDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFLT A+ H+         +        G E +P  H + +  M++  ++     
Sbjct: 191 ACGTGGFLTCAIEHLNHQVKTAADRTRLQECIFGVEKKPLPHMLAMTNMMLHGIDV---- 246

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               N++  +TLS   KD     R    ++NPPFG     ++D +E         R    
Sbjct: 247 --PTNVRHDNTLSRPLKDYGPKDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + +D   LF+  + + L+      G+AA+VL    LF        + ++R LLE   +
Sbjct: 298 --ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGTK---TNLKRELLEEFNL 346

Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
             IV LP  +F   T+IAT +             
Sbjct: 347 HTIVRLPKGVFSPYTSIATNILFFEKGGPTREVW 380


>gi|307155044|ref|YP_003890428.1| adenine-specific DNA-methyltransferase [Cyanothece sp. PCC 7822]
 gi|306985272|gb|ADN17153.1| Site-specific DNA-methyltransferase (adenine-specific) [Cyanothece
           sp. PCC 7822]
          Length = 606

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 106/591 (17%), Positives = 196/591 (33%), Gaps = 108/591 (18%)

Query: 3   EFTGSAASLANFIWKNAEDLW------GDFKHTDFGKVILP----FTLLRRLEC---ALE 49
           +   +A  L + I    + +       G+          LP       L+ L+      E
Sbjct: 11  QSQTTAQRLGSVIKSARDIMRKDKGLNGELDR-------LPQLTWIMFLKLLDDMEKVRE 63

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYS--------------FYNTSEYSLSTLGSTN 95
                  + Y +          +VK                   F N  +  L     + 
Sbjct: 64  DEAFLEGKIYQSLLKYPYRWRDWVKQPNQPETTLHLLSGDQFLQFINNEKVILPDGKES- 122

Query: 96  TRNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
             + L +Y+ S   N     + +  +  F     R+    LL  +    + I        
Sbjct: 123 --DGLFAYLRSLQSNTGRERQDLIREV-FRDVNNRMISGALLRDVVNKINDIHFDSSEEV 179

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  +SN YE +++         + +F TPR VV     ++           P +  T++D
Sbjct: 180 NI-LSNFYESMLKEMRDAAG-DSGEFYTPRPVVRFMVKVI----------DPKLGETIHD 227

Query: 212 PTCGTGGFLTDAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           P CGT GFL +   ++       +         G E +P  + +    +L+  +E     
Sbjct: 228 PACGTAGFLIEVYEYLKGQCKADEWAMLQASLSGVEAKPLPYMLAQMNLLLHGVEY---- 283

Query: 271 DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               +++  ++L + L       +    L+NPPFG            E +      F P 
Sbjct: 284 ---PDVEHRNSLGQPLTNLGQKDQVDIILTNPPFG-----------GEEEEKIKNNFPPK 329

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + + S+ ++LF   +   L+  P  G R  IV+ +  LF        ++++  LL    +
Sbjct: 330 M-QTSETALLFFQLIMRLLKKHPKPG-RGGIVVPNGVLFGDGIC---AKVKEQLLTQFNL 384

Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG--KVQLINATDLWTSIRNEGKKRRII 444
             IV LP  +F   T+I T L       + E     +V L      +T       K + +
Sbjct: 385 HTIVRLPNGVFEPYTSIPTNLLFFDASGSTEEIWYYEVALPEGMKKFT-------KTKPM 437

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL--DKTGLARLEADI 502
            D    + L  + +RE    +   +   FG     V    +       D    A   AD 
Sbjct: 438 QDGDFDECLVWWNNREENGQAWRYN---FG----AVYEAAKAKAQPHWDAANEALAMADK 490

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
             +++  L +      +K +      +   E    + +   + K LK K S
Sbjct: 491 CSKQIKQLEEK-----IKVLEVSNLDFTPVEQ---KKLLEKQIKELKGKIS 533


>gi|84616896|emb|CAJ13790.1| type I restriction-modification system, M subunit [Desulfococcus
           multivorans]
          Length = 488

 Score =  170 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 144/394 (36%), Gaps = 57/394 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E         Y +   S     S+ K       N    +   L      
Sbjct: 33  LIFLKIFDDK-EQEWQLTVPGYKSPLPSRFRWSSWAK-------NPEGMTGEELI-DFVN 83

Query: 98  NNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           N+L   +   +  A  +          F      ++   LL ++            +   
Sbjct: 84  NDLFPALKKLATAA-GVSPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDR 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  +  A ++ TPR V      +L           P + +T+ DP
Sbjct: 143 HLFNDIYEKILSDLQSAGN--AGEYYTPRAVTQFMVDML----------DPQLGQTILDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFLT A+ H+       +    L    HG E +P  H + +  M++  ++     
Sbjct: 191 ACGTGGFLTCAIEHLNKQVKTAEDRKRLQECIHGVEKKPLPHMLAMTNMMLHGIDV---- 246

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               N++  +TLS   KD     R    ++NPPFG     ++D +E         R    
Sbjct: 247 --PTNVRHDNTLSRPLKDYGPRDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + +D   LF+  + + L+      G+AA+VL    LF        + ++R LLE   +
Sbjct: 298 --ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGTK---TNLKRELLEEFNL 346

Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
             IV LP  +F   T+IAT +         +   
Sbjct: 347 HTIVRLPKGVFSPYTSIATNILFFEKGGPTKEVW 380


>gi|78773878|gb|ABB51226.1| type I RM system M subunit [Arthrospira platensis]
          Length = 504

 Score =  170 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 161/467 (34%), Gaps = 75/467 (16%)

Query: 38  FTLLRRLECALEPTR----SAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTL 91
              L+ L+  LE  R      + + Y             +  K+        S      L
Sbjct: 32  LLFLKYLDD-LEQERSMEAELMGKSYEFILDETYRWSYWAVPKLPDGQIDRNSALIGDDL 90

Query: 92  GSTNTRNNLESYIASF------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
            +    + L +Y+  F      SD  +    +  F     + +    L    +    +  
Sbjct: 91  INY-VNDVLFTYLKGFKQRATSSDTIEYKIGEI-FGEIKNKFQSGYSLRDALERIDELRF 148

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                    +S++YE  I+  G        ++ TPR ++     ++           P +
Sbjct: 149 QTQD-EKHELSHLYETKIKNMG-NAGRNGGEYYTPRPLIRAMIRVV----------KPKI 196

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP---HGQELEPETHAVCVAGMLIR 262
              +YD  CG+ GFL ++ +++       +    L      G+E +   + + +  M++ 
Sbjct: 197 GDRIYDGACGSAGFLCESYDYLRQDNLTTQQLRQLQTQTLFGKEKKSLAYVIAIMNMILH 256

Query: 263 RLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            ++       + NI   +TL++   D+    RF   L+NPPFG K  K+           
Sbjct: 257 GID-------APNIIHTNTLTENLSDIQDKDRFDVILANPPFGGKERKEVQQNFPI---- 305

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                     K  + + LFL H    L++    GGRAAIV+ ++ L    A +    +R+
Sbjct: 306 ----------KTGETAFLFLQHFIKILKV----GGRAAIVIKNTFL--SNADNAARALRQ 349

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-RRGKVQLINAT---------- 428
            LL +  + +I+  P   F    + T +         +  +G                  
Sbjct: 350 ELLSSCNLHSILDCPGGTFIGAGVKTVVLFFDKSNPTDAVQGMPLFSQGKSPTEELATRK 409

Query: 429 -DLWTSI--RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
              +     RN G K   +NDD  R+ +++  +      S  +D   
Sbjct: 410 IWYYQLDPGRNMG-KTNPLNDDDLREFVELQATFAESDKSWSVDVAD 455


>gi|260579031|ref|ZP_05846931.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
 gi|258602832|gb|EEW16109.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
          Length = 388

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 31/233 (13%)

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCL 296
             +GQE +  T A+    M++   E       + +I+QG TLS   F      + F Y +
Sbjct: 13  SIYGQEKDNATWALSRMNMILHGNE-------THDIRQGDTLSDPKFLKGEQLQTFDYFV 65

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF  K  K          + E GRF G   P   +G   FL+H+   L+      GR
Sbjct: 66  ANPPFSVKTWK-------NGFDKEYGRFDGFAEPPEKNGDYAFLLHMVKSLKSD----GR 114

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A++L    LF G     E+ IR  L+   LI+AI+ LP +LF+ T I   + ++  ++ 
Sbjct: 115 GAVILPHGVLFRGNT---EAAIREELIRRGLIKAIIGLPANLFYGTGIPACIIVIDKKEA 171

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             R G + +I+A+  +     +G K R +     R+I+D Y++ ++ +    +
Sbjct: 172 ANRTG-IFMIDASKGFE---KDGAKNR-LRPRDMRKIIDTYLAGDDVERYARM 219


>gi|297209067|ref|ZP_06925467.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296886338|gb|EFH25271.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 266

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 64/289 (22%), Positives = 117/289 (40%), Gaps = 26/289 (8%)

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    ML+  +     R  + +I+   TL    F G  F   ++NPP+  K
Sbjct: 1   QERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGHTFDAVIANPPYSAK 55

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  D      E  +G        L   S     F+ H+ + L+      G  A+VL    
Sbjct: 56  WTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGV 106

Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V 
Sbjct: 107 LFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQEDYVL 161

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLR 482
            I+A++ +      GK +  + D Q  +I++ Y  +E   K+S     +        +  
Sbjct: 162 FIDASNDFEK----GKNQNHLTDAQVERIINTYKRKETIDKYSYSATLQEIADNDYNLNI 217

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           P R     ++     L+      K      +     +   ++++     
Sbjct: 218 P-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEVEQEINAYLKELGVLKD 265


>gi|171057995|ref|YP_001790344.1| N-6 DNA methylase [Leptothrix cholodnii SP-6]
 gi|170775440|gb|ACB33579.1| N-6 DNA methylase [Leptothrix cholodnii SP-6]
          Length = 489

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 89/456 (19%), Positives = 160/456 (35%), Gaps = 83/456 (18%)

Query: 38  FTLLRRLECA---LEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+  +     LE TR   +    + + +     D E     A  SF +   + +L  
Sbjct: 34  LLFLKVFDALEEELELTRDGYKSPIPERMRWRNWAADAEGITGDALLSFVDNELFVTLKG 93

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L +   R N   Y+       + +FE          ++   LL ++    +GI+      
Sbjct: 94  LSADPLR-NPRGYV------VRGVFE-----DAYNYMKSGQLLRQVVNKLNGIDF-NRQS 140

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                +++YE +++   S  +  A +F TPR V      ++          +P +   ++
Sbjct: 141 ERHQFNDLYEKILKDLQSAGN--AGEFYTPRAVTQFMVDMV----------NPQLGERVF 188

Query: 211 DPTCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           DP  GTGGFL  A+ H+      +  +        G E +   H +CV  +++  +E   
Sbjct: 189 DPATGTGGFLVCAIEHLRRQVHNTEQEAQLQNSILGVEKKQLPHMLCVTNLMLHGIEV-- 246

Query: 269 RRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  ++  +TL    +D     R    L+NPPFG   E   +             F 
Sbjct: 247 ----PSQVRHDNTLARPLRDYGAADRVDVVLTNPPFGGIEEPGIEQG-----------FP 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + +  + + LFL+ +   L+      GRAA+VL    LF        + I+  LL   
Sbjct: 292 ADV-RTKETADLFLVLIKQLLKH----NGRAALVLPDGTLFGEGVK---TRIKEQLLAEC 343

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK-RRI 443
            +  IV LP  +F   T I T L   +     +         A   +      G K    
Sbjct: 344 KLHTIVRLPNGVFAPYTGIKTNLLFFTKGAPTQ---------AIWYYEHPYPAGAKSYNK 394

Query: 444 INDDQRRQI----------LDIYVSRENGKFSRMLD 469
               +  +            D + +R   + +  +D
Sbjct: 395 TRPIRIEEFDAEKAWWGSEADGFAARVENERAWKVD 430


>gi|308190348|ref|YP_003923279.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|319777745|ref|YP_004137396.1| n-6 DNA methylase [Mycoplasma fermentans M64]
 gi|307625090|gb|ADN69395.1| site-specific DNA-methyltransferase (adenine-specific) [Mycoplasma
           fermentans JER]
 gi|318038820|gb|ADV35019.1| N-6 DNA methylase [Mycoplasma fermentans M64]
          Length = 551

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 98/606 (16%), Positives = 219/606 (36%), Gaps = 110/606 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG-------DFKHTDFGKVILPFTLL-RRLECALEPTR 52
           MT FT    ++ + I    +DL G            +  ++++    L + L        
Sbjct: 1   MTNFTKLENNIKSII----DDLKGLCSTNGLSNTAGE--EIVVTSVFLYKFLNDKF---- 50

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNLESYIA----- 105
             +          N+  E  +K + Y   FY+     ++        + L  YI      
Sbjct: 51  --ISNLKKFAKELNVPFEEIIKNSNYMDGFYDAYPQDVAFKYEDTI-DYLVGYINEDDFY 107

Query: 106 -SFSDNAKAIF-----EDFD--------------FSSTIARLEKAGLLYKICKNFSG--I 143
             F D    I      E F+               S+ +   ++      +    +    
Sbjct: 108 QKFDDTLIRISDYKQNEAFNVDTAEGTKKPLFVRLSTFVEPSKRNNFTKNVFSYITRDRF 167

Query: 144 ELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +       +    S I+E+LI  +     +   ++ TP+ +      +L+          
Sbjct: 168 DFGEAFNNNYDFFSTIFEYLISDYNIASGK-YAEYFTPQTLSKAIGEILV-----KMSPI 221

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              I  +YDP+ G+G  +     H+A+     K       + Q++  ++       ML+ 
Sbjct: 222 EDKIYEIYDPSAGSGSLVL----HLANELGEGKFGNKARVYTQDISQKSSRFLRINMLLN 277

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWEKDKDAVE 313
            L+     +   NI +G TL       K         +F +  SNPPF   +   +D +E
Sbjct: 278 GLK-----ESLDNIIEGDTLLTPTHYKKAGDATTGLKQFDFITSNPPFKTDFSSTRDNIE 332

Query: 314 KEHKNGELGRFGPGLP--KISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
              +N E  RF  G+P    +        +LF+ H+   L+     GG+AAIV+ +   F
Sbjct: 333 LMWQNTE--RFFAGIPKVPKTKKDSMAIYLLFIQHILYSLKE----GGKAAIVVPTG--F 384

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                  E  IR+++++   ++ ++++P+++F  T     +  +         G+V L++
Sbjct: 385 ITAQSGIEKTIRQYIIDRKWLKGVISMPSNIFANTGTNVSVLFIDK---TNTNGEVLLMD 441

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLR 485
           A+ +    + +  ++ ++  D+  +I++ +V+ +    F+            +   +   
Sbjct: 442 ASKMGHKEKVKDLQKTVLTHDELNKIVNDFVNHKVEDDFTI----------SVTYDQIKE 491

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            ++ L       ++ +        + Q  +  ++    +++  +   ++   +   S   
Sbjct: 492 RNYSLSAGQYFEVKIE-----YVDITQEEFDKMIDDFNKELEQF-TKDTEEFQKEMSKTL 545

Query: 546 KTLKVK 551
           K LK+K
Sbjct: 546 KELKLK 551


>gi|154244736|ref|YP_001415694.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
 gi|154158821|gb|ABS66037.1| N-6 DNA methylase [Xanthobacter autotrophicus Py2]
          Length = 710

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 98/544 (18%), Positives = 181/544 (33%), Gaps = 86/544 (15%)

Query: 38  FTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAG-------YSFYNTSEYS 87
              L+ ++      E       E Y +          +   +         SF N     
Sbjct: 49  LMFLKFVDDMERVHEDEAVLAGETYRSLIDPPYRWRDWASDSAGITGPDLLSFINGE--- 105

Query: 88  LSTLGSTNT-RNNLESYIASFSDNA-----KAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
             T+ +  T    L +Y+ S   N      + +     F           +L  +    +
Sbjct: 106 -QTVRADGTKGPGLFTYLRSLRGNGEGRQRRDVVSAV-FRDLRNYATSGYVLRDVINLVN 163

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I     T   + +  +YE L+R       +   +F TPR VV     ++          
Sbjct: 164 DIHF-DSTEDIQTLGRMYETLLREMRDAAGQN-GEFYTPRPVVRFMVQVI---------- 211

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            P +  T+ DP CGTGGFL  A +H+    D     +I       G E       +    
Sbjct: 212 DPKLSETVLDPACGTGGFLAAAFDHMKPSADTVEKREILQRSTLRGGEDSSLPFLLAQMN 271

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           +L+  LE       + +I+ G+ L     ++    R    L+NPPFG +   ++  +   
Sbjct: 272 LLLHGLE-------APDIEFGNALRFKLTEIGERDRVEVILTNPPFGGE---EEAGILTN 321

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
             +           + ++ ++LFL  +  +L+    G GRA +V+ +  LF        +
Sbjct: 322 FPDDR---------RTAETALLFLQLIMRRLK--RGGHGRAGVVVPNGILFGDGIA---A 367

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            I+  LLE   +  IV LP   F   T+I T +            G +        W   
Sbjct: 368 RIKADLLEQFNLHTIVRLPEGTFAPYTDIPTNIIFFDTSGP---TGDI------WYWEQP 418

Query: 435 ----RNEGKKRRIINDDQRRQILDIYVSRENGKFSRML-----DYRTFGYRRIKVLRPLR 485
               R +  K + +  ++    L+ + +R+ G  +  +       R    R I V   L+
Sbjct: 419 LPGGRRKYSKTQPLLYEELTDCLEWWSARKEGPQAWKVFGPSLIKRDTEGRTIAVDLDLK 478

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
                     A     +   + +   Q   L +L  +   +  +    S    +   + A
Sbjct: 479 NP----HAKEANHRRPVEIIESAVAKQRELLAVLDELRALVGAFDKITSNSPRAKLGDIA 534

Query: 546 KTLK 549
             ++
Sbjct: 535 PLVR 538


>gi|78357541|ref|YP_388990.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219946|gb|ABB39295.1| type I restriction-modification system, M subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 488

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 144/394 (36%), Gaps = 57/394 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E         Y +   S     S+ K       N    +   L      
Sbjct: 33  LIFLKIFDDK-EQEWQLTVPGYKSPLPSRFRWSSWAK-------NPEGMTGEELI-DFVN 83

Query: 98  NNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           N+L   +   +  A  +          F      ++   LL ++            +   
Sbjct: 84  NDLFPALKKLATAA-GVSPHGKVVGSVFEDAYNYMKSGTLLRQVINTIEEDVDFNKSGDR 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + ++IYE ++    S  +  A ++ TPR V      +L           P + +T+ DP
Sbjct: 143 HLFNDIYEKILSDLQSAGN--AGEYYTPRAVTQFMVDML----------DPQLGQTILDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFLT A+ H+       +    L    HG E +P  H + +  M++  ++     
Sbjct: 191 ACGTGGFLTCAIEHLNKQVKTAEDRKRLQECIHGVEKKPLPHMLAMTNMMLHGIDV---- 246

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               N++  +TLS   KD     R    ++NPPFG     ++D +E         R    
Sbjct: 247 --PTNVRHDNTLSRPLKDYGPRDRVDLIITNPPFGG---MEEDGIENNFPRKYQTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + +D   LF+  + + L+      G+AA+VL    LF        + I+R LLE   +
Sbjct: 298 --ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGVK---TTIKRELLEEFNL 346

Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
             IV LP  +F   T+IAT +         +   
Sbjct: 347 HTIVRLPKGVFSPYTSIATNILFFEKGGPTKEVW 380


>gi|295401869|ref|ZP_06811833.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110990|ref|YP_003989306.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
 gi|294976123|gb|EFG51737.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216091|gb|ADP74695.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 643

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 149/376 (39%), Gaps = 53/376 (14%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY-EHL 162
           + S   +   +F +  F +          LYK+        L      +   + ++ E L
Sbjct: 78  LESIEPSLSGVFLNDTFKNIEET-----TLYKLVVLLERYGLTKTEYQNNEATTVFFETL 132

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I+     ++       TP  +  L    L             +  ++YD T G    L D
Sbjct: 133 IK---ELLASSKGYDFTPDGLSQLMIQAL-----------KPITGSVYDGTAGIANILVD 178

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A  +    G           +GQE+  E + +    + +  +  +       +++ G T+
Sbjct: 179 AYRYAKGKGKDI------SVYGQEINEELYVIGKLNLFVNHILPEQG-----DMKLGDTI 227

Query: 283 SKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSML 337
               +       +F Y + N PFG +    + A+     N    RF    LP  S G   
Sbjct: 228 RDPKWLENGRLMQFDYIMMNFPFGLRDWGYEFAI-----NDPYHRFELYALPSKSQGDYS 282

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H    L       G+AA+++    L  G A   E +IR  LL++D+IE+IV+LP +L
Sbjct: 283 FILHALASLNQE----GKAALIVPFGTLVRGAA---ERKIRSILLKDDVIESIVSLPNNL 335

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F  T I   L +L+  K   ++GKVQ INA   +   R     ++ +     ++I++   
Sbjct: 336 FSGTGIQVALLLLNKHKPSHKKGKVQFINAEGDYERTRT----QKYLTSKHVQKIIETLE 391

Query: 458 SRENGK-FSRMLDYRT 472
           + EN + +SR++    
Sbjct: 392 AYENKEKYSRIVTIDE 407


>gi|78776896|ref|YP_393211.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78777791|ref|YP_394106.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497436|gb|ABB43976.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78498331|gb|ABB44871.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
          Length = 530

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 96/500 (19%), Positives = 194/500 (38%), Gaps = 66/500 (13%)

Query: 9   ASLANFIWKNAEDLWG-DFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNI 67
            SL ++ W  ++ L       + + + I+ F  L+ L          +   +       +
Sbjct: 13  KSLCDYYWAYSDILRDIGINESTYDQRIMAFMALKLLID-----NDKLMFTFEYNNNFGL 67

Query: 68  DLESFVK----VAGYSFYNTSE-----------YSLSTLGSTNTRNNLESYIASFSDNAK 112
           D   F K        +F N  +           ++  +  + +T  N+ +Y+  F     
Sbjct: 68  DHAIFAKYDLGETKKTFLNIIKNIEKLGQNLNYFTQESKYNPDTSKNILTYLNHF----- 122

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
              + F+    I  L     L  +   ++      D  P     ++YE  I R      +
Sbjct: 123 ---KTFELERYIQELP-NNYLENVLDIYTYKANFRD-YPKEQYKDLYEATISRMKKLSGD 177

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                 T + +VHL   +     +   K +      +YDPTCGT   L ++ ++      
Sbjct: 178 LTGQHFTQKSIVHLMCEVSKFEAEGYDKLA------IYDPTCGTASMLMESAHYF----Y 227

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---- 288
           +      +  +GQEL  +T  +    + I  L+   +   +  I  G+TL+   F     
Sbjct: 228 NKNKIENIEVYGQELHGQTWLLAKIFLEISSLDGKSQGIKNT-IAYGNTLTNPAFANGIN 286

Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGRFGPGLPKISDGSMLFLM 340
               F + ++NPPFG  W+ + D +       + +    +  +     PK SDG  LF+ 
Sbjct: 287 GDTSFDFIIANPPFGVDWKHNYDEIVQNMSSKKSDFFVVKDEKNKVVTPKKSDGQFLFMQ 346

Query: 341 HLANKLELPPNGG--GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           H+ N ++          AAI+ SS+ +  G A S ES+IR+ +     + A++  P+ +F
Sbjct: 347 HIINLMKSEKRRNKHAHAAIISSSTLISTGNATSSESKIRKEIFNTGFVSAVLEQPSAMF 406

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-----KKRRIINDDQRRQIL 453
             T+I++++W L      +   K+ ++ A      + +       K +   +    R++ 
Sbjct: 407 TNTDISSHIWFLD----SDPSEKITIVKADTKEEELFSPHLQAKDKMKNSYSQKNIRRLA 462

Query: 454 DIYVSRENGKF-SRMLDYRT 472
            +  S++  K+ S+ +D + 
Sbjct: 463 TLINSKKEFKYKSKFIDSKD 482


>gi|262371154|ref|ZP_06064475.1| type I restriction enzyme, M protein [Acinetobacter johnsonii
           SH046]
 gi|262313884|gb|EEY94930.1| type I restriction enzyme, M protein [Acinetobacter johnsonii
           SH046]
          Length = 504

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/521 (14%), Positives = 169/521 (32%), Gaps = 90/521 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+   + T+     K        I +E  +          S++           
Sbjct: 40  LLFIRRLDEI-QITKEKKANKLSQIKKQTIAVEHPIFTPEQDHLRWSKF----------- 87

Query: 98  NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144
             L      ++  A  +F         D ++    ++ A        LL K+    + + 
Sbjct: 88  ITLGDAATLYNTVANEVFPFIKNLGAEDETTYSHHMKDARFTIPTPALLTKVVDLVADVP 147

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +           +IYE+++ +     +     F TPR ++ +   L+           P 
Sbjct: 148 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------QPK 191

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCV 256
              T+ DP CGT GFL  A  ++ D             K        G + +     +  
Sbjct: 192 PTDTICDPACGTAGFLVAASEYLNDHYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGS 251

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             M++  +E       +  I+   +LS+       ++   L+NPPF    + +  A   +
Sbjct: 252 MNMMLHGVE-------NPRIENRDSLSETHSHIESKYSLILANPPFAGSLDNESCAKNIQ 304

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                       + K         +            GGRAA+++    LF   +     
Sbjct: 305 A-----------VVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSKAHK 347

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           ++R+ ++E   +EAI+++P+ +F     ++T + I +   +     KV   +        
Sbjct: 348 DLRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY-- 404

Query: 435 RNEGKKRRIIND-----DQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRP 483
            +   KR  ++      +    I+  + +      R+  + S M+D          +   
Sbjct: 405 -SLDDKRNELDASKHENNNIPDIIARFKNLEAESTRKATEQSFMVDKADIAANGYDLSIN 463

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                + ++         +   ++        +  LK M++
Sbjct: 464 RYKEVVYEQVEYEAPSKILADLEVLEQDILKGMTTLKEMLK 504


>gi|254777457|ref|ZP_05218973.1| type I restriction-modification system, M subunit [Mycobacterium
           avium subsp. avium ATCC 25291]
          Length = 474

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 76/441 (17%), Positives = 155/441 (35%), Gaps = 55/441 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +  LE  R    E +     +      +           +  +L T  +    
Sbjct: 28  LLFLKAFDG-LEENREITEENFRPAIEAPYRWRDWAADPNGR----TGDALLTFVNNELL 82

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L     + S + + +     F  T  R+    LL  +    + I     +     M++
Sbjct: 83  PYLRGLSGTGSHDPRDVLAAV-FKETYNRMLSGYLLRDVVNKVNEINFA-SSDDIHTMAH 140

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE ++R         + +F TPR ++      +           P +   + DP CGTG
Sbjct: 141 LYESMLREMRDAAG-DSGEFYTPRPIIRFIVQQV----------DPRLGEVILDPACGTG 189

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFL +A+ H+      +           G E +P    + +  +++  +          N
Sbjct: 190 GFLVEALEHLSPKVTTTAQLRALHENLRGIEKKPLPFLLGMMNLVLHGV-------GQPN 242

Query: 276 IQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I +G+ L++ +      +R    L+NPPFG +   ++ +++      +           +
Sbjct: 243 ITRGNALAESITQISKARRVDVILTNPPFGGE---EEKSIQANFPADKQ---------TA 290

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL  +   L+     GGR  IV+ +  LF G  G   + I++ LL    +  IV 
Sbjct: 291 ETAWLFLQLVIRMLKD----GGRCGIVVPNGLLFGGGVG---ARIKKQLLTECNLHTIVR 343

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP   F   T+I + L         +     ++          R +  K + +  ++   
Sbjct: 344 LPDGAFAPYTDIPSNLLFFDKTGRTKEIWYYEISPPEG-----RKKYSKSKPMRFEEFAD 398

Query: 452 ILDIYVSRENGKFSRMLDYRT 472
               + +R   + +  +    
Sbjct: 399 CQVWWSNRVENERAWRVPIAD 419


>gi|146279551|ref|YP_001169709.1| EcoEI R domain-containing protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557792|gb|ABP72404.1| EcoEI R, C-terminal domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 481

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 108/526 (20%), Positives = 188/526 (35%), Gaps = 94/526 (17%)

Query: 38  FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+ ++    ALE TR          L +     D E        SF N S +  L  
Sbjct: 33  MFFLKIIDDQDEALELTRDEYISPIPADLQWRAWAADPEGMTGDELLSFVNESLFPRLKN 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           L  T  R  +           + +FED ++F      ++   LL ++    +G++   + 
Sbjct: 93  LRPTAPRARV----------IRDVFEDAYNF------MKSGQLLRQVINKINGVDF-NNL 135

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
              +   +IYE L+     + +  A ++  PR V       +           P     L
Sbjct: 136 TERQHFGDIYEQLLNDL--QNAGNAGEYYDPRAVTAFMVQQI----------DPRPGEIL 183

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT AM H+ D       H+          E +P  H +CV  ML+  +E 
Sbjct: 184 MDPACGTGGFLTCAMRHMRDRHIRLPEHEDLMQRSLRAVEKKPLPHMLCVTNMLLNGVEE 243

Query: 267 DPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    ++  +TL++ L +    +R    L+NPPFG K            ++G    
Sbjct: 244 PHF------VRHDNTLARPLTSWSRDERVDIVLTNPPFGGKE-----------EDGIENN 286

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     +  + + LFL  +   L+     GGRAA+VL    LF       ++ ++  L+ 
Sbjct: 287 FP--TFRTRETADLFLALIIRLLKP----GGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +  IV LP  +F    +I T L                    T  W     EG+K  
Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPTSE---------TWFWEHRVPEGQKAY 388

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +    R + L        G             R  +V  P   ++ +    +     ++
Sbjct: 389 SMTKPIRLEHLQRCADWWGG-----------ANREGRVEGPE--AWKVSAEEIKGRGYNL 435

Query: 503 TWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
             +   P  ++  L   + ++  +       + ++E++K+   + L
Sbjct: 436 DIKN--PHAEAEDLGDPEHLLAALDGAEAEVTRLREALKAILTEAL 479


>gi|217980300|ref|YP_002364276.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500937|gb|ACK48909.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 492

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 94/515 (18%), Positives = 173/515 (33%), Gaps = 84/515 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLES-------FVKVAGYSFYNTSE--YSLS 89
             L+ L+   E  +              +D E             G    N       L+
Sbjct: 34  LFLKFLDD-YESEKEDEAVLSGKDYQPVLDEEHRWSNWACPKNAEGKLDINQVRTGDDLT 92

Query: 90  TLGSTNTRNNLESYIAS---------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
              +      L+S+  +         F+    AIF+  D      ++     L ++    
Sbjct: 93  DYVNNELFPYLKSFANAAVTGSDPKSFAYKIGAIFQYLD-----NKVASGHTLREVLDII 147

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             +     +     +S +YE L++  G +    A +F TPR VV      +         
Sbjct: 148 DTLNFQ-SSDEMFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMIKAI--------- 196

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETHAVC 255
             P   +T+YD   G+ GFL +   H+                     G E     + + 
Sbjct: 197 -DPQAGQTIYDAAAGSCGFLVEVFEHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAYVMG 255

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           +  M++  +E       S N+ +G+TL++   D+    R+   L+NPPFG K +      
Sbjct: 256 MMNMILHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKDQIQQN 308

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                            + +   +LFL H    L+     GG+AAIV+    LF  +  S
Sbjct: 309 FPI--------------RANATELLFLQHFMKTLKS----GGKAAIVVPEGVLF--QTNS 348

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431
              ++++ LLEN  +  I++LP  +F   + + T +              V         
Sbjct: 349 AFKQVKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSDVWYYECEPE- 404

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF-GYRRIKVLRPLRMSFIL 490
                +  K + I D+  ++ +++Y SRE  + S  +          +    P +     
Sbjct: 405 ----KKLTKNKPITDEHLKEFVELYRSRETTERSWTVSASKLSEDYDLSAKNPAK---QK 457

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           D   LA  +     R    L      +I   + ++
Sbjct: 458 DAEHLAPSDILKQIRIKEKLVSGLLDEIEDLLAEK 492


>gi|94265771|ref|ZP_01289506.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93453706|gb|EAT04087.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/534 (16%), Positives = 167/534 (31%), Gaps = 73/534 (13%)

Query: 11  LANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGGS 65
           ++  I    + +  D          G+  L     L+  +      R    E +     S
Sbjct: 3   ISTTIKAIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDD-----REVEWEMFDDAYRS 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122
            I      +            +   L      N L   + +      + + +     F  
Sbjct: 56  PIPEPLRWRNWAAD---PEGMTGEKLK-DFIDNTLFPGLQNLQPQGDDYRGVMIRSLFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++     G            +  +YE +++   S  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKLQGGINFNKAGERHELGGVYEQILKDLQSAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V       +           P +   + DP CGTGGFLT A+ H           +    
Sbjct: 170 VTRFMVNRV----------DPKLREMVMDPACGTGGFLTCAIEHKRKHYVKTPQDEATLQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +   H + V  +++  +E          I+  + L++        +R    +
Sbjct: 220 RSILGVEKKSLPHLLAVTNLILHGIE------NPDQIKHDNALARPLISWSPKERVEVIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG              ++G    F   L +  + + LFL    + L+      GRA
Sbjct: 274 ANPPFGGME-----------EDGIETNFPQAL-RTRETADLFLTLFIHLLKPR----GRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK 414
           A+VL    LF        + ++  LL    +  IV LP  +F  + T I T L   S   
Sbjct: 318 AVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFSKGA 373

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             E             +        K + +   + +  +D +    +G  +R    R   
Sbjct: 374 PTEAIWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFTARRETERA-- 426

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             ++ V +    ++ LD       E      +          + ++ +  Q+  
Sbjct: 427 -WKVPVEQIKARNYNLDIKNPYAAEQQNHDPEQLLADYHQQQNEIQQLRDQLKE 479


>gi|307720724|ref|YP_003891864.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
 gi|306978817|gb|ADN08852.1| N-6 DNA methylase [Sulfurimonas autotrophica DSM 16294]
          Length = 495

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 180/515 (34%), Gaps = 91/515 (17%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS-- 93
             L+ L    +          ++Y      N    S+            +  L    S  
Sbjct: 32  LFLKFLNDLEDSKADEALLNGQEYTYILDDNYKWSSWACPKDAK----GKLDLINAKSGE 87

Query: 94  ---TNTRNNLESYIASFSDNAKA----------IFEDFDFSSTIARLEKAGLLYKICKNF 140
                    L  Y+  F    +           IFE  D      R+     L ++    
Sbjct: 88  DLLEFVNKELFPYLKGFKSLTQDPKSIKYKIGAIFEYLD-----NRIANGHTLREVLDII 142

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             ++ H +      +S IYE L++  GS+    + +F TPR ++ +   ++         
Sbjct: 143 DELDFH-NQADLFQLSLIYEKLLKDMGSDGG-NSGEFYTPRPLIKVIADVV--------- 191

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-----------ILVPHGQELEP 249
            +P +  T+YDP  G+ GFL +A NH+    +                      G E  P
Sbjct: 192 -NPVIGETVYDPAAGSCGFLIEAYNHIRYINAEENKQRELSTEQLKFLNEDTFFGNEKTP 250

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWE 306
            ++ + V  M++  +E       S NI + +TL+KD   L   +RF   L+NPPFG    
Sbjct: 251 LSYVMGVMNMILHGIE-------SPNIAKTNTLTKDIRGLEEKERFDCILANPPFGG--- 300

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           K+ D++++              P  S+   +LFL H+ N L+      G+  +V+    L
Sbjct: 301 KENDSIQQNF------------PIKSNATELLFLQHMMNYLK----LNGKCGVVIPEGVL 344

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
           F  +       +++ LLE   +  I++LP  +F   + + T +             ++  
Sbjct: 345 F--QTNKAFQAVKQELLERFNVHTILSLPAGIFLPYSGVKTNVIFFDR---AGATSEIFY 399

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
                 +        K + I  +  ++ LD +  R   + S ++         I    P 
Sbjct: 400 YEVNPPYKLT-----KNKPIKYEHFKEFLDTWQERTLTENSWVVHVNNIKDYDISAKNPN 454

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
           +   I  K+ L  +E   T  K           +L
Sbjct: 455 KNEVIEHKSPLELVENIKTNNKEINDLMDEIEAVL 489


>gi|149369905|ref|ZP_01889756.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49]
 gi|149356396|gb|EDM44952.1| hypothetical protein SCB49_02489 [unidentified eubacterium SCB49]
          Length = 541

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 191/517 (36%), Gaps = 84/517 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDL--------WGDFKHTDFGKVILPFTLLRRLECA----- 47
           MT  T         I    +DL         G+    +F  +I    L + L        
Sbjct: 1   MTNTTKFETQTKALI----DDLKSVCANYGLGN-DGNEFK-IITQVFLYKFLNDKYVYEL 54

Query: 48  --LEPTRSAVREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGSTNTRNNL--- 100
             LEP  +   +   A    + D    +  +++  +     +  LS L     + +    
Sbjct: 55  KQLEPDLAKAEDFDAALKKYSDDDLELLTMQISENTARIAPKNLLSRLFEQQNKPDFADT 114

Query: 101 ---------ESYIASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDT 149
                    +  I  FS   +   +   F +       +K      +     G       
Sbjct: 115 FDETLVSVAKDNIDIFSVLTQGGEKVVLFENLSKYVTDKKDDFCKALVNKLVGFSFEHIF 174

Query: 150 VPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                  + I+E+LI+ + S       ++ TP  V  +  A L+  DD           T
Sbjct: 175 TQKFDFFATIFEYLIKDYNSNSGGKYAEYFTPHAVAKIMAACLVTGDDVN-------NVT 227

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            YDP+ G+G  L +  + + +             + Q++  ++ A+         L  + 
Sbjct: 228 CYDPSAGSGTLLMNIAHAIGE--------DKCTIYSQDISQKSSALLR-----LNLILNN 274

Query: 269 RRDLSKNIQQGSTLSKDLFT-----GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                +NI QG+T+            ++F Y +SNPPF   +      ++ +       R
Sbjct: 275 LVHSIQNIIQGNTILNPYHKQDNGQLEQFDYIVSNPPFKLDFSDYSADLDSKANKE---R 331

Query: 324 FGPGLP--KISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           F  G+P             +LF+ H+ + L       G+AAIV+ +   F       + +
Sbjct: 332 FFAGIPKVPAKKKDSMAIYLLFIQHIMHSL----TAKGKAAIVVPTG--FITAQSGIDKK 385

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ L+E+ ++  +V++P+++F  T     +  L           V L++A++L T +++
Sbjct: 386 IRQKLVESKMLAGVVSMPSNIFATTGTNVSILFLDK----TNTKDVVLVDASNLGTKVKD 441

Query: 437 EGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRT 472
              ++ +++ ++ +QI++++ ++E     S ++ Y  
Sbjct: 442 GKNQKTVLSPEEEQQIINVFNAKEAKDDLSVVVSYDD 478


>gi|94266804|ref|ZP_01290468.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
 gi|93452526|gb|EAT03115.1| N-6 DNA methylase [delta proteobacterium MLMS-1]
          Length = 498

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/534 (16%), Positives = 167/534 (31%), Gaps = 73/534 (13%)

Query: 11  LANFIWKNAEDLWGDF----KHTDFGKVILP-FTLLRRLECALEPTRSAVREKYLAFGGS 65
           ++  I    + +  D          G+  L     L+  +      R    E +     S
Sbjct: 3   ISTTIKAIQDIMRKDVGVDGDAQRIGQ--LGWMLFLKIFDD-----REVEWEMFDDAYRS 55

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSS 122
            I      +            +   L      N L   + +      + + +     F  
Sbjct: 56  PIPEPLRWRNWAAD---PEGMTGEKLK-DFIDNTLFPGLQNLQPRGDDYRGVMIRSLFED 111

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL ++                  +  +YE +++   S  +  A +F TPR 
Sbjct: 112 AYNYMKSGQLLRQVINKLQEGINFNKAGERHELGGVYEQILKDLQSAGN--AGEFYTPRA 169

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPI 239
           V       +           P +  T+ DP CGTGGFLT A+ H           +    
Sbjct: 170 VTRFMVNRV----------DPKLRETVMDPACGTGGFLTCAIEHKRKHYVKTPQDEEILQ 219

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCL 296
               G E +   H + V  +++  +E          I+  + L++        +R    +
Sbjct: 220 RSILGVEKKSLPHLLAVTNLILHGIE------TPDRIKHDNALARPLISWSPKERVEVIV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E         R      + +D   LFL    + L+      GRA
Sbjct: 274 ANPPFGG---MEEDGIETNFPQAFRTR------ETAD---LFLTLFIHLLKPR----GRA 317

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRK 414
           A+VL    LF        + ++  LL    +  IV LP  +F  + T I T L   +   
Sbjct: 318 AVVLPDGFLFGEGMK---TRLKEKLLAECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGA 373

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             E             +        K + +   + +  +D +    +G  +R    R   
Sbjct: 374 PTEAIWYY-----EHPYPEGYKSYSKTKPMQFAEFQAEIDWWGEEADGFSARRETERA-- 426

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
             ++ V +    ++ LD       E      +            ++ +  Q+  
Sbjct: 427 -WKVPVEQIKARNYNLDIKNPYAAEQQNHDPEQLLADYHQQQSEIQQLRDQLKE 479


>gi|297207477|ref|ZP_06923913.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887813|gb|EFH26710.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 266

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 115/289 (39%), Gaps = 26/289 (8%)

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           QE    T+ +    ML+  +  +        I+   TL    F G  F   ++NPP+  K
Sbjct: 1   QERNNTTYNLARMNMLLHDVRYENFE-----IRNDDTLENPAFLGNTFDAVIANPPYSAK 55

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           W  D      E  +G        L   S     F+ H+ + L+      G  A+VL    
Sbjct: 56  WTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGV 106

Query: 365 LFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
           LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   +K  ++   V 
Sbjct: 107 LFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVL 161

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLR 482
            I+A++ +      GK +  ++D Q  +I+D Y  +    K+S     +        +  
Sbjct: 162 FIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKATIDKYSYSATLQEIADNDYNLNI 217

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           P R     ++     L+      K      +     +   ++++     
Sbjct: 218 P-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 265


>gi|322517065|ref|ZP_08069950.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124325|gb|EFX95833.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus vestibularis ATCC 49124]
          Length = 534

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/542 (17%), Positives = 211/542 (38%), Gaps = 73/542 (13%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAF-GGSNIDLESFVKVAGYSF-Y 81
           +  ++   +L  + L + L          V  +  Y      S  D +  ++  G S  +
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFLYEAQNVDSENTYEYLVSMSEEDYDWLLEDIGTSTAW 85

Query: 82  NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123
                 + TL      ++     E+ +   + +   IF              E     + 
Sbjct: 86  MKPNQFIETLHRKQNESDFYETFENTLNQIAIDNNDIFSVHTEGDTTVRLFDERLITDNI 145

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               ++  +   I    + ++ + D         S ++E++I+ +  +      ++ TP 
Sbjct: 146 SDSSKRNEVAKAIINLLAKVKFNQDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   +L+  D             +YDP+ G+G  L +  + +              
Sbjct: 206 SVAKIIAEILVGNDK-------PQNVRIYDPSAGSGTLLMNLASRI--------GVDKAT 250

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            + Q++  ++  +         L  +  +    NI +G+T+ ++    ++  Y +SNPPF
Sbjct: 251 VYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVEGNTILRNRHP-EKMDYIVSNPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM----LFLMHLANKLELPPNGGG 354
              + K +D VE   +  E  RF  G+P     S   M    LF+ H+   L+      G
Sbjct: 305 KLDFSKWRDQVETLPEASE--RFFAGVPKTLPKSKDKMAIYELFIQHIIYSLKPD----G 358

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL +   F       + +IR+ L++N ++  +V++P+++F  T     +  +  + 
Sbjct: 359 QAAVVLPTG--FITAQNGIDKKIRQHLVDNQMMAGVVSMPSNIFATTGTKVSILFIDKK- 415

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
               +G V LI+A++L T I+    ++ +++ ++ ++I++ ++ +E  + FS  + Y   
Sbjct: 416 ---NKGDVVLIDASNLGTKIKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYEDI 472

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQIYPY 529
             +   +         +D   +   E +        KLS L Q     + K + +Q+   
Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMAAFQSKLSDLFQQSH-ALEKEIEEQLKGL 531

Query: 530 GW 531
            +
Sbjct: 532 KY 533


>gi|313114695|ref|ZP_07800197.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622920|gb|EFQ06373.1| N-6 DNA Methylase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 510

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/526 (14%), Positives = 163/526 (30%), Gaps = 106/526 (20%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +R L+      +    E +    G  ++       AG S         S     ++R
Sbjct: 35  LMFIRSLD-----EKELATEDFENMAGEKMEHIFPASEAGQS------MRWSRFKDKDSR 83

Query: 98  NNLESYIASFSDNAKAI----FEDFDFSSTI------------------ARLEKAGLLY- 134
               +         K +      DFD +  +                    ++ A  L  
Sbjct: 84  EIFLTMQQRVFPAIKKMKYGRLPDFDANGELVEIVDDPTRPDEGNTAFARYMDDAMFLIP 143

Query: 135 --KICKNFS---GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             ++ +            D     +  ++YE+++ +  +        F TP  ++ +   
Sbjct: 144 TPQVLQKIITGLEDLYTHDIADLDMQGDLYEYMLGKLATAG--RNGQFRTPLHIIDMMVE 201

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------ 243
           L+           P     + DP CGT GFL  +  +V         P            
Sbjct: 202 LV----------QPTPDDFICDPACGTAGFLVSSAKYVRKHYGDDMTPEQWQHFAGPMFT 251

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           G + +     +    +++  +        +  I    ++SK      ++  CL+NPPF  
Sbjct: 252 GFDTDRTMLRISAMNLMLHSI-------TNPEIDYKDSVSKQNSICSKYTVCLANPPF-- 302

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K   D +++  + K          +       +LFL      L+     GGR A ++   
Sbjct: 303 KGTVDAESINDDLK---------AVTNTKKTELLFLALFLRMLKT----GGRCACIVPDG 349

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
            LF   +      IR+ L+EN  + A++++P+ +F     ++T + + +         KV
Sbjct: 350 VLF--GSSKAHQSIRKELIENHQLRAVISMPSGVFKPYAGVSTAVLVFTKT-GAGGTDKV 406

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFSRMLD------- 469
              +   +     +   KR  + ++    I+  +        R+  + S  +        
Sbjct: 407 WFYD---MKADGFSLDDKRTEVKENDIPDIIARFHNLNAEIDRKRTEQSFFVPKEEIAAN 463

Query: 470 ------YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
                  +      + V  P     + D   L  +E      +L  
Sbjct: 464 GYDLSINKYKETEYVPVEYPSTQEILADLHELE-MEITKGLAELEE 508



 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 610 HVPDAYIDKIFIDEK----DKEIGRVGYEINFNRFF---YQYQPSRKLQDIDAELKGVEA 662
           H  +A ID+   ++      +EI   GY+++ N++    Y        Q+I A+L  +E 
Sbjct: 438 HNLNAEIDRKRTEQSFFVPKEEIAANGYDLSINKYKETEYVPVEYPSTQEILADLHELEM 497

Query: 663 QIATLLEEM 671
           +I   L E+
Sbjct: 498 EITKGLAEL 506


>gi|192289909|ref|YP_001990514.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1]
 gi|192283658|gb|ACF00039.1| N-6 DNA methylase [Rhodopseudomonas palustris TIE-1]
          Length = 513

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 146/429 (34%), Gaps = 69/429 (16%)

Query: 35  ILPFTLLRRLECAL--EPTRSAVREK--------YLAFGGSNIDLESFVKVAGYSFYNTS 84
           I     +R L+ A   E  ++   +K            G       ++  +      N  
Sbjct: 32  ITYLLFIRGLDEAHSREENKANRLKKPMARRIFPEGKDGIGKKGGVAYEDLRWSRLKNRD 91

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
             ++  LGS +    L +     + +A               +    LL K+    + I 
Sbjct: 92  PATMFELGSEHVFPFLRNMAEEGTAHAT------HMKGARFTIPTPALLAKVVDLLADIP 145

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +           ++YE+++ +  +        F TPR ++ L   +           +P 
Sbjct: 146 ME----DRDTKGDLYEYMLAKIATAG--QNGQFRTPRHIIALMVEM----------TAPT 189

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVA 257
               + DP CGT GFL  A   + D                  + HG + +     +   
Sbjct: 190 PKDVIVDPACGTCGFLVAAGEFLRDNHPKLFHDAESRDHFNQEMFHGFDFDGTMLRIGSM 249

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEH 316
            M +  +E         +I+   +LS++    + R+   L+NPPF    + +  A +   
Sbjct: 250 NMTLHGVE-------DPDIRYKDSLSQEHAGDEGRYSLVLANPPFAGSLDYETTAKDL-- 300

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                      + K     +LF+      L+     GGRAA+++    LF   + +    
Sbjct: 301 ---------LAVVKTKKTELLFMALFLKLLKP----GGRAAVIVPDGVLF--GSSTAHKT 345

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           IR+ L+EN  ++ IV LP+ +F     ++T + + +   +      V   +         
Sbjct: 346 IRKMLVENHRLDGIVKLPSGVFRPYAGVSTAIVLFTKTNSG-GTDHVWFYDCHADGQ--- 401

Query: 436 NEGKKRRII 444
           +   KR  +
Sbjct: 402 SLDDKRSYL 410



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 632 GYEINFNRF---FYQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           GY+++ NR+    ++    R  ++I AELK +E +IA  L+E+  
Sbjct: 467 GYDLSLNRYKEVVHEAAEHRPPKEIIAELKALEQEIADGLDELEA 511


>gi|327540217|gb|EGF26806.1| type I restriction-modification system, M subunit [Rhodopirellula
           baltica WH47]
          Length = 497

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 165/458 (36%), Gaps = 66/458 (14%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKV--I--LP-FTLLRRLECALEPTRSAVREKYLAFGG 64
           S++  I    + +        +G    I  L     L+ L+      R    E       
Sbjct: 2   SISTTIKSIQDVMRK--DAGTYGDAQRIEQLAWMFFLKILDD-----RETEEELLEDDFK 54

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           S I  +   +         +  +L           L++ +   + N +A+     F    
Sbjct: 55  SPIPNKYRWRNWATDEEGMTGDTLLNFVDNGLLPALKN-LTVSAANPRAVVIRSAFDDAN 113

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             ++   L+ ++    + I+ +       V  ++YE +++   S  +  A +F TPR V 
Sbjct: 114 QYMKNGTLMRQVINKINEIDFNNSK-DRHVFGDVYEQILKDLQSAGN--AGEFYTPRAVT 170

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----HKIPPI 239
                          + +P +   + DP CGTGGFLT  ++++ D         H+    
Sbjct: 171 QFMVQ----------QTAPQLGERVLDPACGTGGFLTAVIDYIRDEAKQVKSPTHEEELQ 220

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCL 296
              HG E +   H +C   +L+  ++          I+  +TLS   +D     R    +
Sbjct: 221 ASIHGVEKKHLPHILCTTNLLLHGIDV------PSQIRHDNTLSRPLRDYGPKDRVDVIV 274

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPFG     ++D +E         R      + +D   LFL+ + + L+     GGR 
Sbjct: 275 TNPPFGG---MEEDGIELNFPKAFQTR------ETAD---LFLVLIMHLLKE----GGRG 318

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNR- 413
           AIVL    LF        + I+  LL+   +  IV LP  +F  + T I T L   +   
Sbjct: 319 AIVLPDGTLFGEGVK---TRIKERLLDECNLHTIVRLPNGVFNPY-TGIKTNLLFFTKGP 374

Query: 414 -KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
              ++    +   +    +        K + I  ++  
Sbjct: 375 TGKKDCTKDIWFYD--HPYPPGAKSYNKTKPIRIEEFD 410


>gi|317405483|gb|EFV85792.1| type I restriction modification enzyme M subunit [Achromobacter
           xylosoxidans C54]
          Length = 492

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 103/546 (18%), Positives = 176/546 (32%), Gaps = 80/546 (14%)

Query: 10  SLANFIWKNAEDLWGDF----KH---TDFGKVILPFTLLRRLECA---LEPTRSAV---R 56
           SLA  I    + +  D          +     I     L+  +      E T+S      
Sbjct: 2   SLATLIKAIQDIMRKDVGVDGDAQRISQ----ICWLLFLKIFDDKEQEWELTQSNYRSPL 57

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNLESYIASFSDNAKAIF 115
           +    +     D E         F N   + SL  L +    +     I S         
Sbjct: 58  QSRFRWSDWAKDPEGMTGEELIDFVNNDLFPSLKQLATKAGVSAQGRVIGSV-------- 109

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
               F      ++   LL ++            +    + ++IYE ++    S  +  A 
Sbjct: 110 ----FEDAYNYMKSGTLLRQVINTIEEDVDFNSSSDRHLFNDIYEKILADLQSAGN--AG 163

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSH 233
           ++ TPR V      +L           P +  ++ DP CGTGGFLT A+ H+        
Sbjct: 164 EYYTPRAVTQFMVDIL----------DPKLGESILDPACGTGGFLTCAIEHLKKQVKTPD 213

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGK 290
                    HG E +P  H + +  M++  ++          I+  +TLS   KD     
Sbjct: 214 DNRLLQENIHGVEKKPLPHMLALTNMMLHGIDV------PTRIRHDNTLSRPFKDYGPRD 267

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           R    ++NPPFG     ++D +EK        R      + +D   LF+  +   L    
Sbjct: 268 RVDIIITNPPFGG---MEEDGIEKNFLAKHQTR------ETAD---LFMALIMYLLRHDT 315

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
              GRAA+VL    LF        + ++R LLE   +  +V LP  +F   T+I T +  
Sbjct: 316 ---GRAAVVLPDGFLFGEGVK---TTLKRELLEEFNLHTVVRLPKGVFAPYTSIVTNILF 369

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD---IYVSRENGKFSR 466
                  +    V                 K   I +    +          R+  + + 
Sbjct: 370 FEKGGPTK---DVWFFEHPYPAGYKSYSRSKPLTIEEFDLEKTWWGGPQRKGRKTTEHAW 426

Query: 467 MLDYRTFGYRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            +  +    R   +    P  ++  L        E     R+L    Q+   ++L  +  
Sbjct: 427 KVSAKDLAARNYNLDCKNPHEVAVELGDPDELMAEYQDITRQLQAAQQALKTELLAALKA 486

Query: 525 QIYPYG 530
                G
Sbjct: 487 TSGEAG 492


>gi|227820720|ref|YP_002824690.1| N-6 DNA methylase [Sinorhizobium fredii NGR234]
 gi|227339719|gb|ACP23937.1| N-6 DNA methylase [Sinorhizobium fredii NGR234]
          Length = 511

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/546 (17%), Positives = 180/546 (32%), Gaps = 84/546 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +A ++   +W+    L        + + +   T L  L+   E  R +            
Sbjct: 2   NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMMAERNRES------GSLPET 53

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLG-----------------STNTRNNLESYIAS--F 107
           +  E  V+  G +       +L TLG                    T +  + Y+ +   
Sbjct: 54  MRWEDLVQANGLAKLELYRRTLVTLGTVSTRLGKDDALVLPPGDNATPDERKRYVDARPL 113

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            D  + I     F +    + +   L  +      ++   +        ++YE L+++  
Sbjct: 114 PDMVQEI-----FDNASTFIREPQNLTTLVTAIDELDWFSE--ERDQFGDLYEGLLQKNA 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E   GA  + TPR ++ +   L+           P     + DP  GTGGFL  A +++
Sbjct: 167 EETKRGAGQYFTPRVLIRVLVRLM----------QPQPGEVIQDPAGGTGGFLIAADHYM 216

Query: 228 ADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                          +       HG E  P T  + +  + +  ++SD       ++  G
Sbjct: 217 RARTDNYFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD-------HVDLG 269

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TLS       R +  L+NPPFG                            +S   + F+
Sbjct: 270 DTLSDKGKGLGRANLILTNPPFGPAGGAPTRDDLSV------------TATVSSYQLPFV 317

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H    L+     GGRAAIV+  + LF    G    ++R+ +++   +  I+ LPT +F+
Sbjct: 318 EHCIRALKP----GGRAAIVVPDNVLFEDGRG---RQLRQMMMDWCDLHTILRLPTGIFY 370

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              + T +  L+  KTE    K   I   DL   +   G K   + +         + + 
Sbjct: 371 AQGVKTNVIFLTRGKTETGNTKATWIY--DLRAQMPKFG-KTTPLTEAHFEGFEKAFGT- 426

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
               + +          R +  R   ++   D   +A L       +            +
Sbjct: 427 --SPYGKERVKDEGEVGRWREFRREEIAARGDNLDIAWLREADDEAEDGLTEPEDIAAAI 484

Query: 520 KPMMQQ 525
              +Q 
Sbjct: 485 LGHLQA 490


>gi|322515486|ref|ZP_08068472.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
 gi|322118453|gb|EFX90704.1| type I restriction-modification system DNA-methyltransferase
           [Actinobacillus ureae ATCC 25976]
          Length = 552

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/590 (14%), Positives = 212/590 (35%), Gaps = 86/590 (14%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLL-RRLECALE------- 49
           MTE  F      L + +    A    G+    +F   I+    L + L            
Sbjct: 1   MTEQLFQQKTKELIDSLKAICANYGLGN-DGNEFK--IITQVFLYKFLNDKFAFEIKQID 57

Query: 50  ---PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
                  +  +       ++  L +  +    +F   +++    +     ++N+ ++   
Sbjct: 58  PSLAKSESWEQALSKMPAADFKLLTMRRNGDTAFLQPNQF----ISHLFNQSNIANFANL 113

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-------------- 152
           F +    I      ++  +   + G    +    S     P                   
Sbjct: 114 FDETLMGIATHTKNANIFSVKTEGGAKINLFDGVSQYIADPSKRDAFCRAVINKLVEFSF 173

Query: 153 --------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                      + I+E+LI+ + +       ++ TP  V  +  A+L+  +     ++  
Sbjct: 174 EHIFNQKFDFYATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILVPENVRGQLQN-- 231

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              + YDP+ G+G  L +  + + +           + + Q++  ++  +         L
Sbjct: 232 --VSCYDPSAGSGTLLMNIAHAIGE--------KKCIIYTQDISQKSSNLLRL-----NL 276

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +       N+ QG+T++          ++F Y +SNPPF   + + ++ +        
Sbjct: 277 ILNNLVASIPNVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREELAMPAHKD- 335

Query: 321 LGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
             RF  G+P +            LF+ H+ + L+      G+AA+VL +   F       
Sbjct: 336 --RFFAGVPNVPKAKKEKMAIYQLFVQHIIHSLKAD----GKAAVVLPTG--FITAQSGI 387

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           + +IR +L+   ++  +V++P+++F  T     +  L        +  V LI+A++L   
Sbjct: 388 DKKIREFLVNEKMLAGVVSMPSNIFATTGTNVSILFLDR----ANKENVVLIDASNLGEK 443

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I+    ++ +++ ++ ++I+D++  ++    FS ++ Y     +   +         +D 
Sbjct: 444 IKEGKNQKTVLSAEEEQRIIDVFNQKKAEDDFSVVVSYADIAAKNHSLSAGQYFDVKIDH 503

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
             +   E +           + + +  K +  QI        F  +++++
Sbjct: 504 IDITAAEFEQKMADFQQNLTALFAES-KVLESQIQQQMATLKFNAQAVEN 552


>gi|253998801|ref|YP_003050864.1| adenine-specific DNA-methyltransferase [Methylovorus sp. SIP3-4]
 gi|253985480|gb|ACT50337.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Methylovorus sp. SIP3-4]
          Length = 497

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 164/471 (34%), Gaps = 71/471 (15%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +        LE    +   ++L +     D E         F N   +   TL
Sbjct: 34  MFFLKIYDDREAEIELLEDDYKSPLPEHLRWRHWAADPEGMTGDELSDFVNLQLF--PTL 91

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            +          +   +     +  +  F      ++   L+ ++      I    +T  
Sbjct: 92  KTKLI-------LIGPTGERAKVIRNV-FEDAYNYMKSGTLMRQVINKICEINF-NNTQD 142

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                +IYE +++   S  +  A +F TPR V       +           P +  ++ D
Sbjct: 143 RHTFGSIYEQILKDLQSAGN--AGEFYTPRAVTKFIVDRV----------DPQLAESVLD 190

Query: 212 PTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGTGGFL   ++H  +     +  +   +   HG E +   H +C   M++  ++   
Sbjct: 191 PACGTGGFLACTIDHKREKYVKNAADEALLVASIHGVEKKALPHMLCTTNMILHGID--- 247

Query: 269 RRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  I+  + LS    KD     R H  ++NPPFG              ++G   +F
Sbjct: 248 ---TPTQIEHDNMLSRRAYKDYGDADRVHVIVTNPPFGGME-----------EDGVENQF 293

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L +  + + LF+  +   L+      GRAA+VL    LF        + +++ LLE 
Sbjct: 294 PATL-RTRETADLFMALVVKLLKPH----GRAAVVLPDGFLFGEGMK---TRLKQMLLEQ 345

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEER--RGKVQLINATDLWTSIRNEGKK 440
             +  IV LP  +F  + T I T +   + +   E     +V        +        K
Sbjct: 346 CHLHTIVRLPNGVFNPY-TGIKTNILFFTKKPEAEWPATKEVWFYE--HPYPEGVTSYNK 402

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
            R +  ++       +    +G  +R    +     ++ +      ++ LD
Sbjct: 403 TRPMQFEEFATECAWWGDEADGFRARKETPQA---WKVSLEDIAARNYNLD 450


>gi|229490946|ref|ZP_04384780.1| N-6 DNA methylase [Rhodococcus erythropolis SK121]
 gi|229322153|gb|EEN87940.1| N-6 DNA methylase [Rhodococcus erythropolis SK121]
          Length = 515

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 153/429 (35%), Gaps = 71/429 (16%)

Query: 38  FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
              ++RL+    L   ++          G  I+   F         + ++   ST+ + +
Sbjct: 35  LLFIKRLDDQQTLALNKANRL-------GRPIEGNPFPVGTDDDGRDYADLRWSTIKNMH 87

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-------GLLYKICKNFSGIELHPD 148
                +          +A+    D S+    ++ A       GLL K+     G+ +   
Sbjct: 88  PDEAFDVVGQRVFPFIRAM--RSDDSTYAHHMKDARLSIPSPGLLMKVIDLLDGVPMEN- 144

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   ++YE+++ +     +     F TPR ++ +   ++          +P     
Sbjct: 145 ---LDTKGDVYEYMLSKIA--SAGQNGQFRTPRHIIQMMVEMM----------APQPGDR 189

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP  GT GFL  A  H+    S         +     + HG + +     +    M++
Sbjct: 190 IVDPASGTCGFLVAASEHMRAHHSEEISSGATREQYHHDMFHGFDFDNTMLRIGSMNMML 249

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E       + +++   +L++        +   L+NPPF    + +  A + +     
Sbjct: 250 HGIE-------NPDVRYRDSLAEANTADAGAYSMILANPPFAGSLDYENTAKDLQ----- 297

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + K     +LF+      L+     GGRAA+++    LF   + +    +R+ 
Sbjct: 298 ------QIVKTKKTELLFMALFLRLLKP----GGRAAVIVPDGVLF--GSSTAHKTLRKM 345

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E+  ++A+V LP+  F     ++T +   +   +      V     T       +   
Sbjct: 346 LVEDHKLDAVVKLPSGAFKPYAGVSTAILFFTRTDSG-GTDNVWFYEVTADGY---SLDD 401

Query: 440 KRRIINDDQ 448
           KR  + DD+
Sbjct: 402 KRTPLLDDE 410


>gi|330999088|ref|ZP_08322811.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
 gi|329575609|gb|EGG57143.1| N-6 DNA Methylase [Parasutterella excrementihominis YIT 11859]
          Length = 473

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/543 (16%), Positives = 178/543 (32%), Gaps = 95/543 (17%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHT-DFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
              +  SL   +WK A+ + G       F   I   T L  L          + ++ +  
Sbjct: 1   MEVTETSLVKKVWKLADVMAG---AGIGFTDYITQLTYLLFL---------KMDQENVDL 48

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFSDNAKAIFEDFDF 120
                                       L      + L  Y  I       + +     F
Sbjct: 49  MDEESK-------------IPEGLRWENLRKETGEDQLSLYERILRTLSKQEGLIGTI-F 94

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +    ++E    L K+       +     +   V   +YE ++++ G +   GA  + TP
Sbjct: 95  TKAQNKIESPVYLSKLISFIDQEQWL--ILKGDVKGALYEAILQKNGQDKKSGAGQYFTP 152

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---IP 237
           R ++     ++          SP +  T+ DP CGT GFL  A N++             
Sbjct: 153 RPLIDAIVDVI----------SPKIGETVIDPACGTAGFLLSAFNYMKGQSMDTDLNIKL 202

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G ++ P    +    + +  +  +        I    +L K+    K++   L+
Sbjct: 203 RNSSLKGYDITPLVVTLGSMNLYLHGVGLNSSP-----IVCQDSLIKE--PDKKYDIVLA 255

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG +     +    +            + +  +  + FL H+ + L+     GGRA 
Sbjct: 256 NPPFGARAAGSVEIHRSDF-----------IKETKNNQINFLQHIMSLLKS----GGRAG 300

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +VL  + LF     SGE E+R+ LL +  +  I+ LPT +F+   + T +     +   +
Sbjct: 301 VVLPDNVLFES---SGE-EVRKKLLTDFNLHTILRLPTGIFYANGVQTNVLFFEKKGKTK 356

Query: 418 RRGKVQLINATDLWTSIRNEGKKR----RIINDDQRRQILDIYVSRENGKFSRMLD---Y 470
                      +LW      G K       +  +     +  + S +  K     +    
Sbjct: 357 -----------ELWVYDYRSGIKHTLATNPLKREDLDDFVSCFSSEDRNKREETYNKDTN 405

Query: 471 RTFGYRRIKVLRPLR-------MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
               +R+  +   L        +S+I + +            KL    +    D +  + 
Sbjct: 406 PNGRWRKFSIEEILEREGTNLDLSWIKNDSDALEEMKIPELLKLLTEKKQNISDAVTELQ 465

Query: 524 QQI 526
           +++
Sbjct: 466 KEL 468


>gi|153838493|ref|ZP_01991160.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|149748116|gb|EDM58975.1| type I restriction-modification system, M subunit [Vibrio
           parahaemolyticus AQ3810]
          Length = 494

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 94/521 (18%), Positives = 176/521 (33%), Gaps = 94/521 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ L+   E  +              +D E                 ++ +    T +
Sbjct: 34  LFLKFLDD-YESEKEDEAVLSGKDYQPVLDEEHRWSNWACPKNADGNLDINKV---RTGD 89

Query: 99  NLESYIA-----------------------SFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
           +L  Y+                        SF+    AIF+  D      ++     L +
Sbjct: 90  DLTDYVNNELFPYLKGFANSAITGSGVDPKSFAYKIGAIFQYLD-----NKVASGHTLRE 144

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +      +     +     +S +YE L++  G +    A +F TPR VV      +    
Sbjct: 145 VLDIIDTLNFQ-SSDEMFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMIKAI---- 198

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPE 250
                  P   +T+YD   G+ GFL +A +H+                     G E    
Sbjct: 199 ------DPQAGQTIYDAAAGSCGFLVEAFDHLKAKKSALSTEQWDFIQRDTFFGFEKTSL 252

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEK 307
            + + +  M++  +E       S N+ +G+TL++   D+    R+   L+NPPFG K ++
Sbjct: 253 AYVMGMMNMILHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKE 305

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                                P  ++   +LF+ H    L+     GG+AA+V+    LF
Sbjct: 306 QIQQNF---------------PIKANATELLFMQHFMKTLKS----GGKAAVVVPEGVLF 346

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI 425
             +  S   ++++ LLEN  +  I++LP  +F   + + T +              V   
Sbjct: 347 --QTNSAFKQVKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSDVWYY 401

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPL 484
                         K + I DD  ++ +++Y SRE  + S  +          +    P 
Sbjct: 402 ECEPEQKLT-----KNKPITDDHLKEFVELYSSRETTERSWTVSANKLAEDYDLSAKNPA 456

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
           +     D   LA  +     R    L      +I   + ++
Sbjct: 457 K---QKDAEHLAPSDILKQIRTKEKLVSGLLDEIEDLLAEK 494


>gi|148654895|ref|YP_001275100.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148567005|gb|ABQ89150.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 534

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/466 (19%), Positives = 169/466 (36%), Gaps = 71/466 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           M    G   +L   +W+  + L       G      + + +     L+  +   E  + A
Sbjct: 1   MQLSLGLNETLGTDLWRACDILRRDNNVGGVM---QYTEHLAWLLFLKFFDQ--EEKKRA 55

Query: 55  VR-----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                  E Y+     ++  +++        +++S   L           L + +   S 
Sbjct: 56  QEAAFRGETYIPVLPPDLAWDAWAGPEALQKWDSSRGQLVAFVRGRLLPGL-ASLNG-SP 113

Query: 110 NAKAIFEDFDFSSTIARLEKAGL--------LYKICKNFSGIELHPDTVPDRVMSNIYEH 161
            A  I   F   S   +     +        L  +    + I+   D      ++  YE 
Sbjct: 114 LANTIARLFSDESIGDQTVVRNVPVCASDYNLKDVLTIINAIDFERDDH-FFTITRFYED 172

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+ R G E ++ A +F TPR ++     ++           P +  T+YDP CG+ GFL 
Sbjct: 173 LLARMGQE-NQIAGEFHTPRPIIRFMVEVI----------DPQIGETVYDPACGSAGFLA 221

Query: 222 DAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            A   +          +       +G+E +     +    +++  +        + NI +
Sbjct: 222 QAHLWMEKNAHTLEDLETLQQRTFYGREKKALAALLGTMNLILHGV-------TTPNIVR 274

Query: 279 GSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            +TL + + TG  +RF   L+NPPFG K  +                F       +   +
Sbjct: 275 ANTLEESVKTGVAERFDIVLTNPPFGGKEGRHIQQN-----------FPV---PGNATEL 320

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LFL H+  KL+   N   RAA+V+    LF   A    +E++R LL++  + A+++LP  
Sbjct: 321 LFLQHIIKKLKPTANA--RAAVVVPEGTLFRSGA---FAEVKRMLLDDFHLFAVISLPPG 375

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
            F   +++ T L      +    R      N T  +      G K+
Sbjct: 376 AFAPYSDVKTALLFFRRTEGSHIRNP-LARNETWYYELPLPAGLKK 420


>gi|319946655|ref|ZP_08020889.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus australis ATCC 700641]
 gi|319746703|gb|EFV98962.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus australis ATCC 700641]
          Length = 457

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 187/467 (40%), Gaps = 73/467 (15%)

Query: 27  KHTDFGKVILPFTLL-RRLEC-------ALEP--TRSAVREKYLA--------------- 61
           +  ++   +L  + L + L          L+   T   +                     
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFLYQAKVLDESNTYENLLAMSEEDYDWLLEDIGTSTAW 85

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +      +    +FY T E +L+ +      NN    + +  D A  +F++   +
Sbjct: 86  LKPDQLIETLHRQQNETTFYETFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLIT 142

Query: 122 STIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFM 178
            TI+   K   + K I    + I+             S ++E++I+ +  +      ++ 
Sbjct: 143 DTISDSSKRNEVAKSIINLLTRIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYY 202

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +   +L+  D             +YDP+ G+G  L +  + +           
Sbjct: 203 TPHSVAKIIADILVGDDK-------PQNVRIYDPSAGSGTLLMNLASRI--------GVD 247

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +         L  +  +    NI QG+T++ +    ++  Y +SN
Sbjct: 248 KTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTITANRHP-EKMDYIVSN 301

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPN 351
           PPF   + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+    
Sbjct: 302 PPFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD-- 357

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     +  + 
Sbjct: 358 --GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFID 413

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            +     +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ 
Sbjct: 414 KK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIK 456


>gi|241668320|ref|ZP_04755898.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876853|ref|ZP_05249563.1| type I restriction-modification system protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254842874|gb|EET21288.1| type I restriction-modification system protein [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 481

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 99/498 (19%), Positives = 174/498 (34%), Gaps = 65/498 (13%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E+Y+          ++    G     +            
Sbjct: 32  LFLKFLNDYENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKGADGKLDVINADSGDDLLE 91

Query: 95  NTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                L  Y+ SF    +N K +       F     R+     L  +      +      
Sbjct: 92  FVNKELFPYLKSFKSIDENVKTLKYKIGAVFEYIDNRVASGHTLRDVINEIDELNF-NKK 150

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +S IYE+L++  GS+    + +F TPR +V     ++          +P   +T+
Sbjct: 151 EDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQTV 199

Query: 210 YDPTCGTGGFLTDAMNHV--ADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLES 266
           YDP  GT GFL DA  H+   +  +            G+E  P ++ + V  M++  +  
Sbjct: 200 YDPAAGTCGFLIDAYEHMYSKELSTTQLAFLNEETFFGKEKTPLSYVMGVMNMILHGI-- 257

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                 S NI + +TL KD   L    R+   L+NPPFG K +                 
Sbjct: 258 -----TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF---------- 302

Query: 324 FGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ LL
Sbjct: 303 -----PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKELL 351

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           EN  +  IV+LP  +F   + + T +        E     +     T  +        K 
Sbjct: 352 ENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEITPPYKLT-----KN 403

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           + I  +   + L+I+ SR+  + S +++        I    P ++  I  K+ L  +   
Sbjct: 404 KPIQFEHFAEFLEIWQSRKLTENSWIINVADIKDYDISAKNPNKIETIEHKSPLELVNEI 463

Query: 502 ITWRKLSPLHQSFWLDIL 519
                      +    IL
Sbjct: 464 KQNTDEIDKLINEIETIL 481


>gi|326778616|ref|ZP_08237881.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658949|gb|EGE43795.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 867

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 147/429 (34%), Gaps = 70/429 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     ++RL+   +  +     +        +  E   ++   +F       +  +   
Sbjct: 32  ITYLLFIKRLDEI-QIRKDNRASRTAKPDPDPLFAEDQQELRWQNFKACDPEVMYRIVEQ 90

Query: 95  NTRNNLESYIAS---FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                L +       +S + +     F        +    LL K+ +    I +      
Sbjct: 91  GVFPYLRAMGGDGSTYSHHMRD--ARF-------TIPGPNLLAKVVELLDSIAME----S 137

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                +IYE+L+ +  +        F TPR ++ L   +            P     + D
Sbjct: 138 SDTAGDIYEYLLAKIATSG--RNGQFRTPRHLIRLMVEM----------TQPKPDDEVCD 185

Query: 212 PTCGTGGFLTDAMNHVADCGSHH--KIPPILVP-----HGQELEPETHAVCVAGMLIRRL 264
           P CGT GFL  + ++V    +     +           HG + +     +    ML+  +
Sbjct: 186 PACGTAGFLVQSASYVKREHAKALLDVEQQAHFNASMFHGFDFDSTMLRIGSMNMLLHGI 245

Query: 265 ESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           E       + +I+   +L +      +R+   L+NPPF    + +  A +          
Sbjct: 246 E-------NPDIRYRDSLVESSAGEAERYSLILANPPFAGSLDYESTAAD---------- 288

Query: 324 FGPGLP--KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
               LP  K     +LFL      L+     GGRAA+++    LF   +     E+RR L
Sbjct: 289 ---LLPVVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSTKAHKELRRTL 339

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +E+  ++ +V LP+ +F     ++T + + +   +      V   +         +   +
Sbjct: 340 VEDHKLDGVVKLPSGVFKPYAGVSTAILLFTRTDSG-GTDNVWFYDVQADG---FSLDDR 395

Query: 441 RRIINDDQR 449
           R  +  + R
Sbjct: 396 RNPLLPEDR 404


>gi|254831874|ref|ZP_05236529.1| N-6 DNA methylase [Listeria monocytogenes 10403S]
          Length = 539

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/555 (16%), Positives = 208/555 (37%), Gaps = 66/555 (11%)

Query: 1   MTEFTGSA-ASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           M E   +    L + +    A    G  +  ++  V   F   + L          +   
Sbjct: 1   MNESYTTIVKQLVDDLKAISANAGLGG-EAGEYNLVTQSFL-YKFLNDKFLFEIKKLHPN 58

Query: 59  YLAFGGSNIDLESFVKVAGYSF-----YNTSEYSLSTLG----STNTRNNLESYIASFSD 109
           Y     +++  + +  +  +       +    + +  L       +     +  +   + 
Sbjct: 59  YDYEKLASLSEDEYTMLLDFELGTNAAHLHPRHLIEDLYKHQNEDDFAKTFDDTLNDIAV 118

Query: 110 NAKAIFE-----DFDFSSTIARLEK---------AGLLYKICKNFS--GIELHPDTVPDR 153
              +IF      + D      RL             +  +I    +    +         
Sbjct: 119 ENNSIFSVHTAGNSDIRLFEERLINDIVRDSSMRNDVAKQIIAKLALVKFDEVIFDQGFD 178

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
             S I+E++I+ +  +      ++ TP  V  + + +L+  D+             YDP+
Sbjct: 179 FFSTIFEYMIKDYNKDGGGKYAEYYTPHSVAKIMSEILIGDDE-------PKSVKAYDPS 231

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  L +  + +            +  + Q++  ++     + +L   L  +      
Sbjct: 232 AGSGTLLMNVASKI--------GTDKVSIYSQDISQKS-----SNLLRLNLILNNLSHSI 278

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI QG+T+ ++    K+  Y +SNPPF   + + ++ +    +     RF  G+P I +
Sbjct: 279 NNIVQGNTIIENRHADKKMDYIVSNPPFKLDFSEWREQITTLPE--FTERFFAGVPNIPN 336

Query: 334 GS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +       +LF+ H+   L    N  G+AA+V+ +   F       E +IR+ L++N  
Sbjct: 337 SAKDKMAIYLLFIQHIIYSL----NNTGKAAVVVPTG--FITAQSGIEKKIRKHLIDNRW 390

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           ++ +V++P+++F  T     +  +      +   KV L++A+ L T +++   ++ +++ 
Sbjct: 391 LKGVVSMPSNIFATTGTNVSVIFIDKTNNTDDA-KVVLVDASKLGTKVKDGKSQKTLLSS 449

Query: 447 DQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +  +QI+  +  +E    FS  + Y     ++  +         ++   L + E +   +
Sbjct: 450 EDEKQIIQAFQMQEARDDFSVTVTYNEIKEKKYSLSASQYFDVKIEYVELTQEEFNNQMK 509

Query: 506 KLSPLHQSFWLDILK 520
           K     QS +L+  K
Sbjct: 510 KFQCTLQSLFLEDNK 524


>gi|118497742|ref|YP_898792.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella tularensis subsp.
           novicida U112]
 gi|194323713|ref|ZP_03057489.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
 gi|118423648|gb|ABK90038.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella novicida U112]
 gi|194322077|gb|EDX19559.1| N-6 DNA Methylase family [Francisella tularensis subsp. novicida
           FTE]
          Length = 482

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E+Y+          ++          +            
Sbjct: 32  LFLKFLNDYENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKDADGKLDVINADTGDDLLE 91

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 92  FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRVASGHTLRDVINEIDELNF-N 148

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S +YE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 149 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 402 KNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVAD 434


>gi|208779806|ref|ZP_03247150.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
 gi|208744261|gb|EDZ90561.1| N-6 DNA Methylase family protein [Francisella novicida FTG]
          Length = 461

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E+Y+          ++          +            
Sbjct: 11  LFLKFLNDYENEKSLETELIGEEYIFVLDEKYRWNTWAAPKDADGKLDVINADTGDDLLE 70

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 71  FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 127

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S +YE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 128 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 176

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 177 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 236

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 237 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 281

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 282 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 328

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 329 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 380

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 381 KNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVAD 413


>gi|254517361|ref|ZP_05129418.1| type I restriction-modification system, M subunit [gamma
           proteobacterium NOR5-3]
 gi|219674199|gb|EED30568.1| type I restriction-modification system, M subunit [gamma
           proteobacterium NOR5-3]
          Length = 489

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 177/516 (34%), Gaps = 77/516 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-----VAGYSFYNTSEYSLSTLG 92
              L+ L+      R A  E       S I      +       G +     ++    L 
Sbjct: 34  MIFLKILDD-----REAELELIEDDFVSPIPEHLRWRNWAANPEGQTGEALLDFVNGVLF 88

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                   +  +   +   ++I     F   +  ++   L+ ++    + I+   +T   
Sbjct: 89  PKLKELQAQGAVGKRAQVVRSI-----FDGALNFMKSGTLMRQVINKINEIDF-NNTENR 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +IYE +++   S  +  A +F TPR V  L    L          +P +   ++DP
Sbjct: 143 HTFGDIYEKILKDLQSAGN--AGEFYTPRAVTRLIIDRL----------NPQLDEIVFDP 190

Query: 213 TCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGFL+ A++H       S  +        G E +     +C+  M++  ++     
Sbjct: 191 ACGTGGFLSCAIDHKQQFVRTSADRETLARTLRGVEKKSMPFNLCITNMILHGID----- 245

Query: 271 DLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                I   +TL+   KD     R H   +NPPFG     ++D +E         R    
Sbjct: 246 -TPTGIAHDNTLARPFKDYGDKDRVHVIATNPPFGG---MEEDGIENNFPAQYRTR---- 297

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
             + +D   LF+  +   L +     GRA ++L    LF     S    I++ L+E   +
Sbjct: 298 --ETAD---LFMALIIKLLRV----NGRAGVILPDGFLFGEGTKSS---IKKDLIETCNL 345

Query: 388 EAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKR 441
             I+ LP  +F  + T I T +   +  +  E             W     EG     K 
Sbjct: 346 HTIIRLPGGVFNPY-TGIKTNILFFTKGQPTEDI---------WFWEQPYPEGVVNYNKG 395

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           R +  ++   + D +   E  KF    +       ++         + LD+      EA+
Sbjct: 396 RPMQFEEFDALRDWWGD-EATKFRTRTENPH--AWKVTADHVATRGYNLDEKNPHVAEAE 452

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           I    +     +     ++ +  ++          K
Sbjct: 453 IHDPDVLLAAYAQSQREVQGLRDRLKAILSDALGKK 488


>gi|313681903|ref|YP_004059641.1| site-specific DNA-methyltransferase (adenine-specific)
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154763|gb|ADR33441.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Sulfuricurvum kujiense DSM 16994]
          Length = 478

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/450 (20%), Positives = 166/450 (36%), Gaps = 79/450 (17%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+  +        L+    +     L +     D E     A   F NT  + +L  
Sbjct: 35  MIFLKIFDDKDIEMELLDDNYVSPIPAELQWRNWASDDEGLTGEALLVFINTELFPTLQK 94

Query: 91  L--GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           L  G+TN R  L           + +FE  +       ++   ++ ++    + +     
Sbjct: 95  LALGTTNKRAIL----------VREVFEGNN-----NYMKSGTIIRQVINKLNEVNF-NS 138

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +    +  +IYE +++    + +  + +F TPR + +  T  +           P +   
Sbjct: 139 SEDRHMFGDIYETILKEL--QSAGDSGEFYTPRAITNFITDRV----------DPKLGEI 186

Query: 209 LYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           ++DP CGTGGFLT A+ H+          ++       G EL+P  H + +  +++  +E
Sbjct: 187 VFDPACGTGGFLTSAIEHIRQKEVKNIDDRLTLQKSIKGVELKPLPHMLALTNLVLHDIE 246

Query: 266 SDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                    NI+    LSK+L       R    L+NPPFG       +            
Sbjct: 247 V-------PNIEYDDALSKELSSITQKDRVDVILANPPFGGNVTDGMEM----------- 288

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
              P + +  + + LFL+ +   L+     GGRA IVL    L        ++ IR+ LL
Sbjct: 289 -NFPMIYRTKESADLFLILIIQYLKD----GGRAGIVLPDGSL---TGEGVKARIRQKLL 340

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV--QLINATDLWTSIRNEGK 439
           E+  +  I+ LP  +F    ++AT L   +  +  +       QL      +        
Sbjct: 341 EDCNLHTIIRLPNSVFQPYASVATNLLFFTKGEPTKEIWYYEHQLPVGQKAY-------N 393

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           K   I   +   I   + +R   + +  +D
Sbjct: 394 KTNPIQLKEFDPIKAWWDNRLESEQAWKVD 423


>gi|332678455|gb|AEE87584.1| type I restriction-modification system, subunit M
           (methyltransferase) [Francisella cf. novicida Fx1]
          Length = 461

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 91/453 (20%), Positives = 161/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E+Y+          ++          +            
Sbjct: 11  LFLKFLNDYENEKSLEAELIGEEYIFVLDEKYRWNTWAAPKDADGKLDVINADTGDDLLE 70

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 71  FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 127

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S +YE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 128 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 176

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 177 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 236

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 237 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 281

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 282 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 328

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 329 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 380

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 381 KNKPIQFEHFDEFLEIWQSRKLTDNSWIVNVAD 413


>gi|296273009|ref|YP_003655640.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299]
 gi|296097183|gb|ADG93133.1| N-6 DNA methylase [Arcobacter nitrofigilis DSM 7299]
          Length = 483

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 180/500 (36%), Gaps = 66/500 (13%)

Query: 39  TLLRRLECALEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
             LR L+  LE  ++ +     E+Y           S+         +  +         
Sbjct: 33  MFLRYLDE-LENEKADIAVLKDEEYTYILDEEFRWNSWAMPKVDGKIDHHKARNGIDLVQ 91

Query: 95  NTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                L  Y+A F   +++A+ I       FS    +++    L +I   ++       +
Sbjct: 92  FVDGKLFPYLAKFKQTAEHAQTIEYKIGEIFSELKNKIQSGYNLREIL-AYADELPFRSS 150

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +S++YE  I+  G         + TPR ++     ++           P +   +
Sbjct: 151 KDKHELSHLYETKIKNMG-NAGRNGGQYYTPRPLIRAMIDVI----------DPQIGEKV 199

Query: 210 YDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           YD   G+ GFL +A +++ +       + KI      +G+E +   + + +  M++  +E
Sbjct: 200 YDGAVGSAGFLCEAYDYMYERMNKNVDNLKILQERTFYGKEKKNLAYVIGIMNMILHGIE 259

Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                  + NI+  +TL +   D+    R+H  L+NPPFG K  K+              
Sbjct: 260 -------APNIKHTNTLGELIRDIQEKDRYHVILANPPFGGKERKEVQQNFDI------- 305

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  K  + + LFL H    L+     GGRAAIV+ ++ L N    S    +R+ LL
Sbjct: 306 -------KTGETAFLFLQHFIKSLK----AGGRAAIVIKNTILSNSDNASI--ALRKHLL 352

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           E+  +  I+ +P   F    + T +   +  +  ++     L    ++         K  
Sbjct: 353 ESCNLHTILDMPAGTFTGAGVKTVVLFFTKGEATKKIWYYSLNPGRNMG--------KTN 404

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +ND        +  ++ + + S  L+              ++  F  ++  L   +  +
Sbjct: 405 PLNDKDMLDFKTLQKTKADSENSWTLNISDI--DETTYDLSIKNPFTPEEAELRTPKKIL 462

Query: 503 TWRKLSPLHQSFWLDILKPM 522
                     +  L  +K +
Sbjct: 463 EDIVNLDKETNEILASIKEL 482


>gi|86141513|ref|ZP_01060059.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Leeuwenhoekiella
           blandensis MED217]
 gi|85832072|gb|EAQ50527.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Leeuwenhoekiella
           blandensis MED217]
          Length = 516

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 162/440 (36%), Gaps = 76/440 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96
              ++ L+     TR+    K L    +              F     + +L  +     
Sbjct: 35  LIFIKDLDET--ETRNERMAKRLDKEFT-----PIFGPDQQDF----RWKNLKEIDVQAR 83

Query: 97  RNNLESYIASFSDNAKAI-FEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVP 151
            +   + +       +++  E   FS+ +      + KA  L ++ +    +++      
Sbjct: 84  HSIFTNSVDGIFPFIRSLGSEKSLFSTYMKDASFGINKAATLDQVMEKLERLDMSNQ--- 140

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  +IYE+L+ +   E    A  F TPR ++ L   ++           P +  T+ D
Sbjct: 141 -DIKGDIYEYLLSKL--EGGGTAGQFRTPRHIIKLMVEMM----------QPKLEDTICD 187

Query: 212 PTCGTGGFLTDAMNH------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           P+ GT GFL  A  +      + +   + +     + +G E +     +    + +  +E
Sbjct: 188 PSAGTAGFLVAAKEYIDKHYDITELDRNKEHINKHMFNGTEFDATMLRIASMNLFLHGVE 247

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                    NI     +SKD      +   L+NPPF    +K+  A    +         
Sbjct: 248 -------EPNIVDVDAVSKDNEVSDAYTLVLANPPFKGTIDKESIAPGLSN--------- 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             + K +   +LFL  +  +L+     GGRAA ++    LF   +G     IR  ++ N 
Sbjct: 292 --VTKTTKTELLFLALMLRQLKK----GGRAAAIVPDGVLF--GSGKAFKSIRSEIVNNH 343

Query: 386 LIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            +EA+++LP+ +F  +   ++T + I +          V   +   +    ++   KR +
Sbjct: 344 KLEAVISLPSGVFKPYS-GVSTAILIFTKT-DNGGTDHVWFYD---MKADGKSLDDKRNL 398

Query: 444 INDDQRRQILDIYVSRENGK 463
           + D+      + + +    K
Sbjct: 399 LVDE------EAFNNFAFSK 412


>gi|306825748|ref|ZP_07459087.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432109|gb|EFM35086.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 534

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 94/543 (17%), Positives = 211/543 (38%), Gaps = 75/543 (13%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGG----SNIDLESFVKVAGYSF- 80
           +  ++   +L  + L + L       ++ V ++   +      +  D +  ++  G S  
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFL-YQAKVLDESNTYENLLAMNEEDYDWLLEDIGTSTA 84

Query: 81  YNTSEYSLSTLGSTNTR----NNLESYIASFSDNAKAIF----------EDFDFSSTIAR 126
           +  S+  + TL             E+ +   + +   IF            FD       
Sbjct: 85  WLKSDQLIETLHRQQNEPTFYETFENTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDT 144

Query: 127 LEK----AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +        +   I    + ++   D         S ++E++I+ +  +      ++ TP
Sbjct: 145 ISDSSKRNEVAKAIINLLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTP 204

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +   +L+  D             +YDP+ G+G  L +  + +             
Sbjct: 205 HSVAKIIADILVGHDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKT 249

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNPP
Sbjct: 250 TVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPP 303

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGG 353
           F   + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+      
Sbjct: 304 FKLDFSEWRDRVEILPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD---- 357

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     +  +  +
Sbjct: 358 GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK 415

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
                +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E  + FS  + Y  
Sbjct: 416 ----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYED 471

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKPMMQQIYP 528
              +   +         +D   +   E D        KLS L Q     + + + +Q+  
Sbjct: 472 IKEKNYSLSAGQYFDIKIDYVDITAEEFDAKMTAFQNKLSDLFQQSH-ALEQEIEEQMKG 530

Query: 529 YGW 531
             +
Sbjct: 531 IKY 533


>gi|254227051|ref|ZP_04920609.1| N-6 DNA Methylase family [Vibrio cholerae V51]
 gi|125620426|gb|EAZ48802.1| N-6 DNA Methylase family [Vibrio cholerae V51]
          Length = 492

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 177/518 (34%), Gaps = 90/518 (17%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ L+   E  +              +D E              +  ++ +    T +
Sbjct: 34  LFLKFLDD-YESEKEDEAVLSGKDYQPVLDEEHRWSNWACPKNAEGKLDINKV---RTGD 89

Query: 99  NLESYIA---------------------SFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
           +L  Y+                      SF+    AIF+  D      ++     L ++ 
Sbjct: 90  DLTEYVNNELFPYLKSFANAAVTGSDPKSFAYKIGAIFQYLD-----NKVASGHTLREVL 144

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
                +     +     +S +YE L++  G +    A +F TPR VV      +      
Sbjct: 145 DIIDTLNFQ-SSDEMFELSLVYEGLLQNMG-DAGGYAGEFYTPRPVVRAMIKAI------ 196

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETH 252
                P   +T+YD   G+ GFL +A +H+                     G E     +
Sbjct: 197 ----DPQAGQTIYDAAAGSCGFLVEAFDHLKAKKSALSTEQWDFIQRDTFFGFEKTSLAY 252

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDK 309
            + +  M++  +E       S N+ +G+TL++   D+    R+   L+NPPFG K +   
Sbjct: 253 VMGMMNMILHGIE-------SPNLFRGNTLTQNIRDIQEKDRYDIILANPPFGGKEKDQI 305

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                         F     K +   +LF+ H    L+     GG+AAIV+    LF  +
Sbjct: 306 QQN-----------FPV---KANATELLFMQHFMKTLKS----GGKAAIVVPEGILF--Q 345

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428
             S   ++++ LLEN  +  I++LP  +F   + + T +             +V      
Sbjct: 346 TNSAFKQVKQELLENFNLHTILSLPAGVFLPYSGVKTNVLFFER---SGGTSEVWYYECE 402

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY-RRIKVLRPLRMS 487
                      K + I DD  ++ +++Y SRE  + S  +          +    P +  
Sbjct: 403 PEQKLT-----KNKPITDDHLKEFVELYSSRETTERSWTVSASKLAEDYDLSAKNPAK-- 455

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
              D   LA  +     R    L      +I   + ++
Sbjct: 456 -QKDAEHLAPSDILKQIRTKEKLVSGLLDEIEGLLAEK 492


>gi|192360754|ref|YP_001981159.1| type I restriction-modification system subunit M [Cellvibrio
           japonicus Ueda107]
 gi|190686919|gb|ACE84597.1| type I restriction-modification system, M subunit [Cellvibrio
           japonicus Ueda107]
          Length = 490

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 145/395 (36%), Gaps = 60/395 (15%)

Query: 38  FTLLRRLECA---LEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +      E T +      +K   +     D E         F N        L
Sbjct: 33  LLFLKIYDDKEQEWELTHADYKSPLQKRFRWSNWAKDPEGMTGEELIDFVN--NNLFPAL 90

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
               T+          S++ + I     F      ++   LL ++            +  
Sbjct: 91  KQLATKA-------GVSEHGRVIGSV--FEDAYNYMKSGTLLRQVINTIEDDVDFNKSND 141

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             + ++IYE ++    S  +  A ++ TPR V       +          +P +  +++D
Sbjct: 142 RHLFNDIYEKILADLQSAGN--AGEYYTPRAVTQFIVDTI----------NPQLGESIFD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P CGTGGFLT A+ H+         K       HG E +P  H + +  M++  +E    
Sbjct: 190 PACGTGGFLTCAIEHLKSQAKTTADKKRLQKSIHGVEKKPLPHMLAITNMMLHGIEV--- 246

Query: 270 RDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 I+  +TLS   KD     R    ++NPPFG     ++D +EK        R   
Sbjct: 247 ---PTQIRHDNTLSRPYKDYGPRDRVDIIITNPPFGG---MEEDGIEKNFLAKHQTR--- 297

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              + +D   LF+  + + L+      GRAA+VL    LF        + ++R LLE+  
Sbjct: 298 ---ETAD---LFMALIMHLLKPT----GRAAVVLPDGFLFGEGVK---TTLKRELLEDFN 344

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
           +  IV LP  +F   T+IAT +         +   
Sbjct: 345 LHTIVRLPKGVFAPYTSIATNILFFEKGGPTKDVW 379


>gi|225376200|ref|ZP_03753421.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM
           16841]
 gi|225211846|gb|EEG94200.1| hypothetical protein ROSEINA2194_01838 [Roseburia inulinivorans DSM
           16841]
          Length = 549

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/542 (15%), Positives = 196/542 (36%), Gaps = 92/542 (16%)

Query: 28  HTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
            +++   I+    L + L          V++       S    ++   ++    Y     
Sbjct: 30  SSEYK--IITEIFLYKFLNDKFL---YEVQQADEKLKNSENMEQALNNMSEDD-YEMLMM 83

Query: 87  SLSTLGSTNTRNNLESYI----------ASFSDNAKAI----FEDFDFSSTIA---RLEK 129
            L    +   R +  SY+            F      I     + F  S+      RL  
Sbjct: 84  LLPPATAKLKREHFISYLFNHKNDEKFNELFDSTLWDISNTNLDVFSVSTGSGDKIRLFD 143

Query: 130 AGLLYKICKNFSGIELHPDTVPD--------------RVMSNIYEHLIRRFGSEVSEGAE 175
             L   + ++    +     +                   + I+E+LI+ +  +  +   
Sbjct: 144 QNLSQNVTESNRRSDFCKAMIDKLVTFSFAEAFSQKYDFFATIFEYLIKDYNKDFGK-YA 202

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           ++ TP  +  +   +++               T+YDP  G+G  +    + + +      
Sbjct: 203 EYYTPHSIASIIARIMVSEGV--------QNVTVYDPAAGSGTLVLALAHEIGESN---- 250

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK----- 290
                  + Q++  +++       L   L  +       ++  G TL       +     
Sbjct: 251 ----CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGL 301

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHL 342
            +F Y +SNPPF   +  ++D +     +    RF  G+P + +          +FL H+
Sbjct: 302 MKFDYIVSNPPFNVDFSDNRDTL---AGDIYKERFWAGVPNVPNKKKDSMAIYQMFLQHI 358

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              ++     GGRAA+V+ +  L  G       +IR  ++E+ ++  +V++P+++F  T 
Sbjct: 359 IFSMK---ENGGRAAVVVPTGFLTAG--TGIPKKIRERIVEDRMLRGVVSMPSNIFATTG 413

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRE- 460
               +  L N K  E+     L++A+ L T ++ +GK +R +++ ++   I++ + + E 
Sbjct: 414 TNVSVLFLDNSKKYEQA---ILMDASKLGTKVKVDGKNQRTVLSPEEIEDIINTFNNFEP 470

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDIL 519
              FS ++D     Y +I   +    +    +  +  +E     +++    +     ++ 
Sbjct: 471 KDDFSVVVD-----YDKIVQKKCSFSAGQYFEVKIEYVELTQEEFQEKMNSYTEKLTELF 525

Query: 520 KP 521
             
Sbjct: 526 AE 527


>gi|242399586|ref|YP_002995011.1| Type I restriction-modification system methyltransferase subunit
           [Thermococcus sibiricus MM 739]
 gi|242265980|gb|ACS90662.1| Type I restriction-modification system methyltransferase subunit
           [Thermococcus sibiricus MM 739]
          Length = 498

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 171/482 (35%), Gaps = 71/482 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              L+ L    E  +     K   +    I  E         F   S   +  + +    
Sbjct: 34  MLFLKILSDREEERKLEAEVKGEKYVPI-IKEEYLFHNWPKRFGVDSLKKVKDVKTFYDF 92

Query: 96  TRNNLESYIASF--SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
             N L  Y++S   +D    I E   FS+   ++     L +I +N   I  H D     
Sbjct: 93  ITNELWPYLSSLGGTDELNKIGEI--FSNVTVKVHDPHNLLEIFQNIEDI--HKDDEDTH 148

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +MS +YE  +   G E    A ++ TPR +V     ++           P + +T++DP 
Sbjct: 149 IMSQLYEETLMLMGREGGA-AGEYYTPRPIVRFMVKVV----------DPRIGQTVFDPF 197

Query: 214 CGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CG+GGFL +A NH+ +     +         +GQEL+ + + +     L+  + +   + 
Sbjct: 198 CGSGGFLVEAYNHMYEQAKTAEDLRKLDKAFYGQELKTQAYLIANMNTLLHNVNAKLVKT 257

Query: 272 LSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                    T S+DL   G+ +   L+NPPFG K ++                    + K
Sbjct: 258 --------DTFSEDLHNPGELYDVILTNPPFGGKIKESNLQNL--------------IVK 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +  L H+  K +     GG+  IVL    L          ++R+ LLE + + AI
Sbjct: 296 TRSTELAALQHVMKKAKP----GGKVGIVLPDGVL--SNVTKAYVKVRKELLEKNNVFAI 349

Query: 391 VALPTDLFFR------TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           V+LP  +F        +   T L      K                +  I   GK     
Sbjct: 350 VSLPQGVFANISPKGGSGPKTSLLFFERGKPTRE---------VWYYELIPPNGKNYTRA 400

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           N  +   + D     E  K     D   +  + +        S+++    +  ++ D++ 
Sbjct: 401 NPIKDEDLSDALKKFEAWKKYLETDDEEWKKKALS-----ENSWVVSVEEIKEMDYDLSA 455

Query: 505 RK 506
           R 
Sbjct: 456 RN 457


>gi|187931566|ref|YP_001891550.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712475|gb|ACD30772.1| type I restriction-modification system, M subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 482

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E Y+           +    G     +            
Sbjct: 32  LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 91

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 92  IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S IYE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGDKEKATIQTNF-------- 302

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 402 KNKPIQFEHFAEFLEIWQSRKLTDNSWIVNVAD 434


>gi|294782728|ref|ZP_06748054.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481369|gb|EFG29144.1| type I restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
          Length = 545

 Score =  167 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/550 (15%), Positives = 192/550 (34%), Gaps = 80/550 (14%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  +I    L + +          + E+        I   +  +       +    
Sbjct: 28  DGNEYK-IITQVFLYKFINDKFGYEIKKINEELKNAEKWEILYSNMNEEDRLYLLDELSA 86

Query: 87  SLSTLGSTNTRNNLESYIAS------FSDNAKAIFEDFD--FSST---------IARL-- 127
            +  L   +  +NL +  +       F      I +  +  F++            +L  
Sbjct: 87  DVPLLEPQHLISNLWNQQSKGDFALIFDQTMVDIAQKNEDIFATQTTLNTKIPIFEKLTI 146

Query: 128 ------EKAGLLYKICKN---FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                 E++     +      FS  E+  +         I+E+LI+ + +       ++ 
Sbjct: 147 YVTDENERSNFARALVDKLVNFSFEEVFGEHYDFFA--AIFEYLIKDYNTNGGGKYAEYY 204

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP+ +  +   LL+                 YDP+ GTG  +    + + +         
Sbjct: 205 TPQSIATIMARLLVGNKKDYHSVE------CYDPSAGTGTLVMALSHQIGE--------D 250

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292
                 Q++   ++ +    +++  L          +  QG TL               F
Sbjct: 251 KCTIFTQDISQRSNKMLKLNLILNGL-----VSSLDHAIQGDTLVYPYHKSDNGEDLRTF 305

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---LPKISDGSM----LFLMHLANK 345
            + +SNPPF   + ++++ +          RF  G   +P     SM    LF+ H+ N 
Sbjct: 306 DFVVSNPPFKMDFSENREKIAA-----MPARFWAGVPNIPAKKKESMAIYTLFIQHVINS 360

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G+ AIV+ +   F       E +I   ++E+ ++   V++P+++F  T    
Sbjct: 361 LKSKT---GKGAIVIPTG--FITAKSGVEKKILEKIVESKIVYGCVSMPSNVFANTGTNV 415

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKF 464
            +    N K      KV LI+A+ L    ++   K+R + ++    I++ +  ++N   F
Sbjct: 416 SVLFFDNAK---NHDKVILIDASKLGEDYQDGKNKKRRLREEDIELIINTFNDKKNVDDF 472

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKP 521
           S  + Y     ++  +         ++   +   E +   ++     Q ++ +   + K 
Sbjct: 473 SIAVSYEEIKEKKYSLSAGQYFDIKIEYIDMTPEEFEAKMKEYQKELQEYFEEGEKLQKE 532

Query: 522 MMQQIYPYGW 531
           +M+Q+    +
Sbjct: 533 IMEQLGKIKY 542


>gi|320352780|ref|YP_004194119.1| adenine-specific DNA-methyltransferase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121282|gb|ADW16828.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Desulfobulbus propionicus DSM 2032]
          Length = 484

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 86/483 (17%), Positives = 158/483 (32%), Gaps = 82/483 (16%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGK----VILP-FTLLRRLECALEPTRSAVREKYL 60
            + ++L          +        +G       L     L+  +   E     +R+ Y 
Sbjct: 2   SNVSTLVK---SIQNIMRK--DAGTYGDAQRLEQLGWMFFLKIFDDR-EKELELLRDDYS 55

Query: 61  AFGGSNI-------DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
           +     +       D E         F N +   L  L +     +  + +       + 
Sbjct: 56  SPLAPELRWCNWAADEEGLTGEGLLDFVNNT--LLPRLKNLAVGADRVAAL------VRT 107

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
            FED +       ++K  L+ ++    +GI+    +    +  +IYE L++   S  +  
Sbjct: 108 AFEDAN-----NYMKKGTLMRQVINKINGIDF-NASDDRHLFGDIYEKLLKDLQSAGN-- 159

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           A +F TPR V       +           P +  T+ DP CGTGGFL   + H+      
Sbjct: 160 AGEFYTPRAVTQFIVEQV----------DPRLGETVLDPACGTGGFLVCTIEHLRRQART 209

Query: 234 HKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFT 288
            +    +     G E +   H +C+  +++  ++          ++  +TL    +D   
Sbjct: 210 AEDERTIQECFTGIEKKHLPHILCMTNLMLHGIDV------PAGVRHDNTLARPLRDWTR 263

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +R    ++NPPFG     ++D +E         R                      L  
Sbjct: 264 QERVDVIVTNPPFGG---MEEDGIEANFPAEFRTRETA-------------DLFLVLLMK 307

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATY 406
               GGRA +VL    LF        + I+  LL    +  IV LP  +F  + T I T 
Sbjct: 308 LLKPGGRAGLVLPDGTLFGEGVK---TRIKETLLTECNLHTIVRLPNGVFNPY-TGIRTN 363

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           L   +  +                +        K + I  ++       +  RE   F+ 
Sbjct: 364 LLFFTKGQPTTEIWYY-----EHPYPPGAKSYNKTKPIRIEEFAPERAWWHKREENAFAW 418

Query: 467 MLD 469
            +D
Sbjct: 419 RVD 421


>gi|305665032|ref|YP_003861319.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Maribacter sp. HTCC2170]
 gi|88709784|gb|EAR02016.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Maribacter sp. HTCC2170]
          Length = 707

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 93/456 (20%), Positives = 166/456 (36%), Gaps = 74/456 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG------ 92
             LR L+  LE  ++   E         +D E       +  +   +     L       
Sbjct: 34  MFLRYLDE-LEQDKADEAELKGEEYKFILDEEY-----RWPIWAMPKDDDGKLDYHKAMT 87

Query: 93  ----STNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGI 143
                      L  Y+A F   +DN K I       FS    +++    L +I +    +
Sbjct: 88  GPDLVQFVDRKLFPYLAEFKQKADNPKTIEYKIGEIFSELKNKIKSGYNLREILEYADEL 147

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                +     +S++YE  I+  G         + TPR ++     ++           P
Sbjct: 148 PFR-ASTDKHELSHLYESKIKNMG-NAGRNGGQYYTPRPLIRAMINVI----------DP 195

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGM 259
            +   +YD   G+ GFL +   ++ +       + K       +G+E +   + + V  M
Sbjct: 196 QIGEKIYDGAAGSCGFLCETYEYMYERMEKTTGNLKTLQEETLYGKEKKNLAYVIGVMNM 255

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           ++  +E       + NI   +TL +   D+    R+H  L+NPPFG K  K+        
Sbjct: 256 ILHGIE-------APNIIHTNTLGENVRDIQEKNRYHVILANPPFGGKERKEVQQNFDI- 307

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                        K  + + LFL H    L+     GGRAAIV+  S L N       S 
Sbjct: 308 -------------KTGETASLFLQHFIKSLKT----GGRAAIVIKDSFLSN-NTEKAYST 349

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +R+ LL +  +  I+ LP   F+   + T +   +     ++    +L          R 
Sbjct: 350 LRKNLLGSCELNCILDLPRGTFYGAGVKTVVLFFTKGAPTKKIWYYKL-------DPKRT 402

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            G K + +ND+  +  L+   ++E GK S ++    
Sbjct: 403 LG-KTKPLNDNDFKDFLEKIRNKEIGKNSWIIKAHE 437


>gi|294850236|ref|ZP_06790971.1| type I restriction-modification system [Staphylococcus aureus
           A9754]
 gi|294822852|gb|EFG39286.1| type I restriction-modification system [Staphylococcus aureus
           A9754]
          Length = 346

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 105/301 (34%), Gaps = 48/301 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 300

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K   +    GQE    T+ +    ML+  +     R  + +I+   T
Sbjct: 301 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDT 345

Query: 282 L 282
           L
Sbjct: 346 L 346


>gi|83647702|ref|YP_436137.1| type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
 gi|83635745|gb|ABC31712.1| Type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
          Length = 539

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 79/527 (14%), Positives = 171/527 (32%), Gaps = 80/527 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGS-NIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
              +RRL+          +    +         E+ ++    +F +     +  +     
Sbjct: 52  LLFIRRLDEIQRNEERKAQATGESLENPIFSSQEAMLRW--NNFKDKDPNEMFDIVQNKV 109

Query: 97  RNNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
              +++  +  SF+++ K           I  +    LL ++ +    I+++        
Sbjct: 110 FPKIKNLQSQGSFAEHMKD---------AIFMIPSPKLLDQVVQMLDNIDMN----DKDT 156

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +     +     F TPR ++ +   L+           P +  T+ DP  
Sbjct: 157 KGDLYEYLLSKLS--SAGVNGQFRTPRHIIKMMVELM----------KPQINDTICDPAA 204

Query: 215 GTGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           GT GFL  ++ ++ +          + K     +    + +     +    ML+  +E  
Sbjct: 205 GTCGFLMSSVEYIREHYQAELTKADNRKHFNNGLFTAYDFDRHMLRIGAMNMLLHGIE-- 262

Query: 268 PRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--- 322
                +  +    +L    D    + +   L+NPPF    + D  A +     G+     
Sbjct: 263 -----NPAVYYRDSLQDHNDANISEAYSLMLANPPFKGSVDFDIVASDLLRALGKNPAAK 317

Query: 323 -----------RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                                   +LFL  +   L+     GGRAA+++    LF   + 
Sbjct: 318 KARVKEEEDEDGKKKKKGPTEKSELLFLALILRMLKT----GGRAAVIVPDGVLF--GST 371

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
                IR+ L++   ++A+++LP+ +F     ++T + I +   +     KV   +    
Sbjct: 372 KSHKSIRQKLVKEQKLQAVISLPSGVFKPYAGVSTAILIFTKTNSG-GTDKVWFYDMQAD 430

Query: 431 WTSIRNEGKKRRIINDD---------QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
                +   KR  +  D             IL  Y S E    +     RT     + + 
Sbjct: 431 GY---SLDDKRTKLFKDGEEPSHEQSNIADILARYASIEEEDSTEAHRKRTEQSFMVPLK 487

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 + L       +  +        +      D+ K M   +  
Sbjct: 488 DIEANDYDLSLNRYKEVVYEEVEYDEPKVILQRIKDLQKKMADGVKE 534


>gi|21229249|ref|NP_635171.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
 gi|20907823|gb|AAM32843.1| type I restriction-modification system specificity subunit
           [Methanosarcina mazei Go1]
          Length = 504

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 155/457 (33%), Gaps = 93/457 (20%)

Query: 38  FTLLRRLEC--ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
              ++RLE    LE  R+    K                  G+     SE+      +  
Sbjct: 36  LIFMKRLEDMDVLEQRRANATGKA-----------YISIFEGHEECRWSEW--KHKSAEE 82

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVP 151
              ++   +  F  N     E   FS  +      + K  L+ +       +++      
Sbjct: 83  MLKHVRDVVFPFIKNIHD-GEKTLFSQHMKDAVFIIPKPSLVQEAVGIIDELDI--SGQT 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V  +IYE+L+ +  +        F TPR ++ +   L+           P +   + D
Sbjct: 140 SDVQGDIYEYLLSQLATAGK--NGQFRTPRHIIRMIVELV----------DPDVNDRICD 187

Query: 212 PTCGTGGFLTDAMNHVA----------------------DCGSHHKIPPILV---PHGQE 246
           P CGT GFL  A  ++                       D  +       L     +G +
Sbjct: 188 PACGTAGFLFTAYRYILKKYTSPDMVTEDEEGDWHGLIGDHITEQNAWDKLHQDTFYGFD 247

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +     + +  M++  ++       + +I+   TLS      + F   L+NPPF     
Sbjct: 248 FDSTMVRIALMNMVLHGIK-------APHIESTDTLSNQYSGEEAFTVILANPPFKGSI- 299

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                     KN    R   G  K     +LF+  +   L      GG+  +++    LF
Sbjct: 300 ---------DKNDINDRLTLGTTKT---ELLFVEKMYRML----EIGGKCGVIVPDGVLF 343

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI 425
              + +   ++R+ LLE   +E IV++P+ +F     ++T + I +N    E   KV   
Sbjct: 344 --GSSNAHRDLRKLLLEKCQLEGIVSMPSGVFKPYAGVSTAVLIFTNGGNTE---KVWFY 398

Query: 426 NATDLWTSIRNEGKKRRIIN-DDQRRQILDIYVSREN 461
           +         +   KR  ++       I++ + +R  
Sbjct: 399 DMEADGY---SLDDKRTPLDRKGDIPDIIERFRNRRE 432


>gi|194336313|ref|YP_002018107.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308790|gb|ACF43490.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 544

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 78/486 (16%), Positives = 170/486 (34%), Gaps = 73/486 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              +F  +I    L + L          +  +          L                 
Sbjct: 29  DGNEFK-IITQVFLYKFLNDKFAFEAKRIDSRLSGSESWEQALTLLTADELEMLQLQMGP 87

Query: 87  SLSTLGSTNT------RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
             + L   +         N   +   F D  + I      +   A     G    +    
Sbjct: 88  DTARLKPDHFIAHLFRNQNAPQFAKLFDDTLRDI--AITNNDIFAVKTDGGAKVTLFDRL 145

Query: 141 SGIELHPDTVPD----------------------RVMSNIYEHLIRRFGSEVSEGAEDFM 178
           S          D                         ++++E+LI+ +  +      ++ 
Sbjct: 146 SEYITDESKRDDFCRAIINTLVDFSFERIFTQKYDFYASLFEYLIKDYNKDSGGKYAEYY 205

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +  ++L+               + YDP+ G+G  L +  + + +         
Sbjct: 206 TPHAVAKIMASILVPEVQ----RGKVTNASCYDPSSGSGTLLMNLAHAIGE--------Q 253

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHY 294
               + Q++  ++ ++         L  +       NI QG+TL           K+F Y
Sbjct: 254 RCTIYSQDISQKSSSLLR-----LNLILNNLVHSIPNIIQGNTLLHPYHKEGKALKKFDY 308

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLE 347
            +SNPPF   +   ++ ++   ++    RF  G+P +   +        LFL H+   L+
Sbjct: 309 IVSNPPFKMDFSDFRNELDTREQHE---RFFAGIPNVPKQATDKMAIYQLFLQHIIYSLK 365

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GG+AA+V+ +   F       + +IR  L++  ++  +V++P+++F  T     +
Sbjct: 366 P----GGKAAVVVPTG--FITAQSGIDRKIRERLVDGKMLAGVVSMPSNIFATTGTNVSI 419

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSR 466
             +     +  +  V LI+A+ L T ++    ++ ++++D+   I+  + S+E    FS 
Sbjct: 420 LFID----DGNKDDVVLIDASSLGTKVKEGKNQKTVLSEDEEDWIITTFNSKEAEEDFSV 475

Query: 467 MLDYRT 472
           +++Y  
Sbjct: 476 VVNYDE 481


>gi|296876905|ref|ZP_06900951.1| type I restriction enzyme M protein [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432097|gb|EFH17898.1| type I restriction enzyme M protein [Streptococcus parasanguinis
           ATCC 15912]
          Length = 534

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 99/550 (18%), Positives = 216/550 (39%), Gaps = 89/550 (16%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGG----SNIDLESFVKVAG---- 77
           +  ++   +L  + L + L       ++ V ++   +      S  D +  ++  G    
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFL-YQAKVLDESNTYENLLAMSEEDYDWLLEDIGTSTA 84

Query: 78  -----------------YSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIF 115
                             +FY T E +L+ +   N        + ++ I  F +  + I 
Sbjct: 85  WLKPDQLIGTLHRQQNEATFYETFENTLNQIAIDNNDIFSVHTDGDTAIRLFDE--RLIT 142

Query: 116 EDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +    SS    + KA   LL ++   F               S ++E++I+ +  +    
Sbjct: 143 DTISDSSKRNEVAKAIINLLARV--KFDETIFS---QGFDFFSTLFEYMIKDYNKDGGGK 197

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  V  +   +L+  D             +YDP+ G+G  L +  + +      
Sbjct: 198 YAEYYTPHSVAKIIADILVGDDK-------PQNVRIYDPSAGSGTLLMNLASRI------ 244

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    + Q++  ++  +         L  +  +    NI QG+T+  +    ++  
Sbjct: 245 --GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMD 296

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKL 346
           Y +SNPPF   + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L
Sbjct: 297 YIVSNPPFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSL 354

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     
Sbjct: 355 KPD----GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVS 408

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FS 465
           +  +  +     +G V LI+A++L T ++    ++ +++ ++ ++I+  ++ +E  + FS
Sbjct: 409 ILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVGTFIKKEAVEDFS 464

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR----KLSPLHQSFWLDILKP 521
             + Y     +   +         +D   +   E +        KLS L Q     + + 
Sbjct: 465 VTVSYEDIKEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQNKLSDLFQQSH-ALEQE 523

Query: 522 MMQQIYPYGW 531
           + +Q+    +
Sbjct: 524 IEKQMKGLKY 533


>gi|163858307|ref|YP_001632605.1| type I restriction modification enzyme M subunit [Bordetella petrii
           DSM 12804]
 gi|163262035|emb|CAP44337.1| type I restriction modification enzyme M subunit [Bordetella
           petrii]
          Length = 492

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 91/436 (20%), Positives = 150/436 (34%), Gaps = 73/436 (16%)

Query: 10  SLANFIWKNAEDLWGDF----KH---TDFGKVILPFTLLRRLECA---LEPTRSAV---R 56
           SLA  I    + +  D          +     I     L+  +      E T+S+     
Sbjct: 2   SLATLIKAIQDIMRKDVGVDGDAQRISQ----ICWLLFLKIFDDKEQEWELTQSSYRSPL 57

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           +    +     D E         F N        L    T+          S   + I  
Sbjct: 58  QSRFRWSNWAKDPEGMTGEELIDFVN--NDLFPALKQLATKA-------GVSAQGRVIGS 108

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
              F      ++   LL ++            +    + +++YE ++    S  +  A +
Sbjct: 109 V--FEDAYNYMKSGTLLRQVINTIEEDVDFNSSSDRHLFNDVYEKILSDLQSAGN--AGE 164

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHH 234
           + TPR V      +L           P +  ++ DP CGTGGFLT A+ H+         
Sbjct: 165 YYTPRAVTQFIVDIL----------DPKLGESILDPACGTGGFLTCAIEHLKKQVKTPDD 214

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKR 291
                   HG E +P  H + +  M++  ++          I+  +TLS   KD     R
Sbjct: 215 NRLLQENIHGVEKKPLPHMLAMTNMMLHGIDV------PTRIRHDNTLSRPFKDYGPRDR 268

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               ++NPPFG     ++D +EK        R      + +D   LF+  + + L+    
Sbjct: 269 VDIIITNPPFGG---MEEDGIEKNFLAKHQTR------ETAD---LFMALITHLLKHDT- 315

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
             GRAA+VL    LF        + ++R LLE   +  IV LP  +F   T+IAT +   
Sbjct: 316 --GRAAVVLPDGFLFGEGVK---TTLKRELLEEFNLHTIVRLPKGVFAPYTSIATNILFF 370

Query: 411 SNRKTEERRGKVQLIN 426
                      V    
Sbjct: 371 EKGGP---TQDVWFFE 383


>gi|17231112|ref|NP_487660.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
 gi|17132753|dbj|BAB75319.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
          Length = 484

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 177/499 (35%), Gaps = 58/499 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E     + + Y +     +   ++   +       +   L         
Sbjct: 33  MIFLKVFDAR-EEEYELLEDNYKSPIPEGLRWRNWAADSEG----ITGDGLLDFVDNALF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +D    +     F      ++   L+ ++    + ++ +         S 
Sbjct: 88  KTLKELRTTATDARGQMIGKV-FEDAYNYMKNGTLIRQVINKLNEVDFNKKDQKK-QFSE 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A ++ TPR V       +           P +   ++DP CGTG
Sbjct: 146 IYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPACGTG 193

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A++++        +P        G E +P  + +C+  +++  ++          
Sbjct: 194 GFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPYNLCITNLILHGIDVPEA------ 247

Query: 276 IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  +TL    +D    +R    ++NPPFG     ++D +E            P   +  
Sbjct: 248 -EHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL+ +A+ L+     GGR AIVL    LF        + I+  LL++  +  IV 
Sbjct: 295 ETADLFLVLIAHLLKE----GGRGAIVLPDGTLFGEGVK---TRIKEKLLQDCNLHTIVR 347

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T L   +  +  E             + +      K + I  ++   
Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTETIWYY-----EHPYPAGYKSYSKTKPIRFEEFAP 402

Query: 452 ILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
             + + +RE  +F+  +           + +  P ++            +      +L  
Sbjct: 403 EQEWWDNREENEFAWKVSIADLKANNYNLDIKNPHKVDVEHADLDEMLADHQKLMAELGE 462

Query: 510 LHQSFWLDILKPMMQQIYP 528
           +      ++++ +  Q+  
Sbjct: 463 VRSKLKFELIEALNDQVDK 481


>gi|53729078|ref|ZP_00348313.1| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|126208662|ref|YP_001053887.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae L20]
 gi|126097454|gb|ABN74282.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 550

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 91/590 (15%), Positives = 213/590 (36%), Gaps = 88/590 (14%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLL-RRLECALEPTRSAVR 56
           MTE  F      L + +    A    G+    +F   I+    L + L          ++
Sbjct: 1   MTEQLFQQKTKELIDSLKAICANYGLGN-DGNEFK--IITQVFLYKFLNDKFAF---EIK 54

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT------------RNNLESYI 104
           +   +    +   ++  +++   F      +++  G T              ++N+ ++ 
Sbjct: 55  QIKPSLAEHDSWEQALGEMSAEDF---DFLTMNMNGDTAILRPNQFISHLFNQSNIANFA 111

Query: 105 ASFSDNAKAI-----------------FEDFD-FSSTIARLEKAGLL-YKICKNFSGIEL 145
             F +    I                    FD  S  IA   K       +         
Sbjct: 112 NLFDETLMDIAAQNADIFSVKTEGGAKINLFDRVSQYIADPSKRDAFCRAVINKLVEFSF 171

Query: 146 HPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                      + I+E+LI+ + +       ++ TP  V  +  A+L+  +     ++  
Sbjct: 172 EHIFNQKFDFYATIFEYLIKDYNTNSGGKYAEYYTPHAVARIMAAILVPENVRGQLQN-- 229

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              + YDP+ G+G  L +  + + +             + Q++  ++  +         L
Sbjct: 230 --VSCYDPSAGSGTLLMNIAHAIGE--------KKCTIYTQDISQKSSNLLRL-----NL 274

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +       N+ QG+T++          ++F Y +SNPPF   + + ++ +    +   
Sbjct: 275 ILNNLVASIPNVVQGNTMTHPYHKSGDQLRQFDYIVSNPPFKMDFSEVREEL---AETAH 331

Query: 321 LGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
             RF  G+P +           +LF+ H+ + L+      G+AA+VL +   F       
Sbjct: 332 KARFFAGVPNVPKAKKEGMKIYLLFVQHIIHSLKAD----GKAAVVLPTG--FITDQSKI 385

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           + +IR +L+   ++  +V++P+++F  T     +  L     E     V LI+A++L   
Sbjct: 386 DKKIREFLVNEKMLAGVVSMPSNIFATTGTNVSILFLDRANQEN----VVLIDASNLGEK 441

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I+    ++ +++ ++ ++I+D++  ++    FS ++ Y     +   +          D 
Sbjct: 442 IKEGKNQKTVLSAEEEQRIIDVFNQKKAEEDFSVVVSYANIEAKNYSLSAGQYFDVKTDH 501

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
             +   E +           + + +  K +  QI        F  + +++
Sbjct: 502 IDITAAEFEQKMADFQQNLTALFAES-KALESQIQQQMATLKFNAQVVEN 550


>gi|315918351|ref|ZP_07914591.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692226|gb|EFS29061.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 322

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 33/253 (13%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L        +              GQE+      +    M +  +  +     + 
Sbjct: 32  GSGSLLLQMKKQFEEHIIEEG------FFGQEINMTNFNLARMNMSLHNINYN-----NF 80

Query: 275 NIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKI 331
           +I++G TL   L   ++ F   +SNPP+  KW  D D            RF P   L   
Sbjct: 81  SIKRGDTLLNPLHNEEKPFDAIVSNPPYSIKWVGDADPT-----LINDERFAPAGKLAPK 135

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F+MH  + L       GRAAIV      +   A   E  IR++L++N+ ++ ++
Sbjct: 136 SYADYAFIMHSLSYLSSK----GRAAIVCFPGIFYRKGA---ERTIRKYLVDNNFVDCVI 188

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            LP +LFF T+IAT + +++  KTE    +V  I+A+  +    N      I+ +     
Sbjct: 189 QLPDNLFFGTSIATCILVMAKNKTE---NRVLFIDASKEFKKETN----NNILEEKNINT 241

Query: 452 ILDIYVSRENGKF 464
           I++ + +RE  ++
Sbjct: 242 IVEEFRNREEKEY 254


>gi|293609931|ref|ZP_06692233.1| type I restriction enzyme [Acinetobacter sp. SH024]
 gi|292828383|gb|EFF86746.1| type I restriction enzyme [Acinetobacter sp. SH024]
          Length = 498

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/521 (14%), Positives = 162/521 (31%), Gaps = 96/521 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+                            K   +  +   +  L         
Sbjct: 40  LLFIRRLD--------------EIQITKEKKANRLKKPVEHPIFTPEQDHLRWSK----F 81

Query: 98  NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144
             L      +S  A  +F         D ++    ++ A        LL K+    + + 
Sbjct: 82  ITLGDAATLYSTVANEVFPFIKNLGAEDETTYSHHMKDARFTIPTPALLTKVVDLVADVP 141

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +           +IYE+++ +     +     F TPR ++ +   L+           P 
Sbjct: 142 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------QPK 185

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCV 256
              T+ DP CGT GFL  A  ++ D             K        G + +     +  
Sbjct: 186 PTDTICDPACGTAGFLVAASEYLNDHYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGS 245

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             M++  +E       +  I+   +LS+       ++   L+NPPF    + +  A   +
Sbjct: 246 MNMMLHGVE-------NPRIENRDSLSETHSHIESKYSLILANPPFAGSLDNESCAKNIQ 298

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                       + K         +            GGRAA+++    LF   + +   
Sbjct: 299 A-----------VVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHK 341

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +R+ ++E   +EAI+++P+ +F     ++T + I +   +     KV   +        
Sbjct: 342 ALRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY-- 398

Query: 435 RNEGKKRRIIND-----DQRRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRP 483
            +   KR  ++      +    I+  +        R+  + S M+D          +   
Sbjct: 399 -SLDDKRNELDASKHENNNIPDIIARFKNLDGEKDRKATEQSFMVDKADIAANGYDLSIN 457

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                + ++         +   ++        +  LK M++
Sbjct: 458 RYKEVVYEQVEYEAPSKILADLEVLEQDILKGMATLKEMLK 498


>gi|56708241|ref|YP_170137.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110670712|ref|YP_667269.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           FSC198]
 gi|56604733|emb|CAG45804.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|110321045|emb|CAL09187.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           FSC198]
          Length = 488

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E Y+           +    G     +            
Sbjct: 38  LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 97

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 98  IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 154

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S IYE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 155 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 203

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 204 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 263

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 264 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 308

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 309 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 355

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 356 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 407

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 408 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTD 440


>gi|167628749|ref|YP_001679248.1| type i restriction-modification system, m subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167591489|gb|ABZ83237.1| type i restriction-modification system, m subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 478

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 161/473 (34%), Gaps = 84/473 (17%)

Query: 20  EDLWGDFKHT-----DFGKVILPFTLLRRLECA-----LEPTRSAVREKYLAFGGSNIDL 69
           + +             + + I     L+  +       LE     V  +   +     D 
Sbjct: 12  DIMR--IDAGINGDAQYIEQIAWLLFLKAFDYKEQEWELEDDYVPVIPEQYRWRNWAEDD 69

Query: 70  ESFVKVAGYSFYNTSEYSLSTLGSTNTRN-NLESYIASFSDNAKAIFEDFDFSSTIARLE 128
           E      G +     E    TL + +  + +   ++       + + E  +       ++
Sbjct: 70  EGI---TGDALIEHVENMFRTLRNLDVSDGDPRKFL------VRDVMEGVN-----NFMK 115

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              LL ++    +      +     + + IYE +++    + +  A +F TPR V     
Sbjct: 116 SGTLLRQVINKINADINFDEVKTAHLFNGIYESMLKDL--QSAGKAGEFYTPRPVTRFIV 173

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
                      K +P +   + DP CGTGGFLT  ++      +           G E +
Sbjct: 174 D----------KVNPQLGEIVLDPACGTGGFLTSVIDRFDIKTADEYRTLQKTIRGIEKK 223

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPF-GKK 304
           P    +CV  ++   ++          I+  +TL           +    ++NPPF G +
Sbjct: 224 PFPFLLCVTNLIAHGIDVPL-------IRHDNTLRTPTTDYSLADKVDVIVTNPPFGGAE 276

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            +    +V  E +N E              + LFL+H+   L+     GGR  +VL    
Sbjct: 277 EKAISQSVPAELRNTE-------------TADLFLVHIMALLKD----GGRCGMVLPDGF 319

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423
           LF        + I++ LLE + +  IV LP D+F   TNI T L   +  K  +      
Sbjct: 320 LFGTGVK---AAIKKKLLEENNLHTIVRLPKDVFAPYTNINTNLLFFTKGKPTQ------ 370

Query: 424 LINATDLWTSIRNEG----KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
                  +     +G     K + +  +    +   + +R+    S+ +    
Sbjct: 371 ---GVWFYRLEMPQGYKHFSKTKPMLYEHFAPVRAWWNNRKESDVSQYVPVED 420


>gi|254415510|ref|ZP_05029270.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177691|gb|EDX72695.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 513

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 180/483 (37%), Gaps = 78/483 (16%)

Query: 7   SAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLE---CALEPTRSAVRE 57
           S   L N IW+  + L       G     ++ + +     L+ L+    A E    +   
Sbjct: 2   SREQLTNDIWRACDILRRDNNCGGVM---EYVEHLSWLLFLKFLDGQEDAFEQEAKSANR 58

Query: 58  KYLAFGGSNIDLESFVKVA------GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           KY           ++V  A               +    L     R  L  ++AS S + 
Sbjct: 59  KYTRVISRQYRWSNWVTKALGKKGGKKGRRTIPAWDDHQLM-EFVRGELIPHLASLSGSP 117

Query: 112 -KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            + +         +   +    L  + K    I+L  +      +S+IYE L++R GSE 
Sbjct: 118 EREVIAGIFRDRNVIICDSPDNLKDVLKIVDQIDLT-NPDDIYTVSHIYEDLLKRLGSE- 175

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           ++ A +F TPR V+     ++           P +  T+YDP CGT GFL +A  H    
Sbjct: 176 NKMAGEFYTPRSVIRFMVEVI----------DPQIGETVYDPACGTCGFLLEAFLHTQKQ 225

Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-- 285
                  +I       GQE +P    +    M++  +       L  +I++ +TL++D  
Sbjct: 226 EKTAKDREILQRHTFVGQEKKPLPALLGTMNMVLHGV-------LVPDIRRRNTLAEDIR 278

Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMH 341
                  + F   L+NPPFG K               E  R     P  ++   +LFL H
Sbjct: 279 DGSGLFDETFDVILTNPPFGGK---------------ENARIQKNFPVKANATELLFLQH 323

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
           +  KL+     G R  IV+    LF G A    + +++ LL +  +  +V+LP   F   
Sbjct: 324 VMKKLKP--KQGARCGIVVPEGTLFRGGA---FATVKKELLHDFNLFMVVSLPPGTFAPY 378

Query: 401 TNIATYLWILSNRKTEERR--GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +++   L      + ++     ++ L +    +        K   I+D+   +   ++  
Sbjct: 379 SDVKAALLFFERGEQQKEVLYQEIALPDDLKKF-------SKVNSISDEHFAEARQVWQQ 431

Query: 459 REN 461
            ++
Sbjct: 432 MKD 434


>gi|224457359|ref|ZP_03665832.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159467|gb|ADA78858.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 482

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E Y+           +    G     +            
Sbjct: 32  LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 91

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 92  IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S IYE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 402 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTD 434


>gi|254370728|ref|ZP_04986733.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875062|ref|ZP_05247772.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|151568971|gb|EDN34625.1| hypothetical protein FTBG_00529 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254841061|gb|EET19497.1| DNA-methyltransferase [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 487

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E Y+           +    G     +            
Sbjct: 37  LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 96

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 97  IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 153

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S IYE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 154 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 202

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 203 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 262

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 263 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 307

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 308 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 354

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 355 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 406

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 407 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVTD 439


>gi|254435715|ref|ZP_05049222.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
 gi|207088826|gb|EDZ66098.1| N-6 DNA Methylase family [Nitrosococcus oceani AFC27]
          Length = 398

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 142/399 (35%), Gaps = 82/399 (20%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +                      + E  + V GY     S +  ST       
Sbjct: 33  LIFLKIFDDK--------------------EQEWQLTVPGYKSPLPSRFRWSTWAKNPEG 72

Query: 98  NNLESYIASFSDNAKAIFEDFD------------------FSSTIARLEKAGLLYKICKN 139
              E  I  F +N   +F                      F      ++   LL ++   
Sbjct: 73  ITGEELID-FVNN--DLFPALKKLATTAGVSPHGKVVGSVFEDAYNYMKSGTLLRQVINT 129

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                    +    + ++IYE ++    S  +  A ++ TPR V      +L        
Sbjct: 130 IEENVDFNKSGDRHLFNDIYEKILADLQSAGN--AGEYYTPRAVTQFMVDIL-------- 179

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVA 257
              P + +++ DP CGTGGFLT A+ H+      +  +       HG E +P  H + + 
Sbjct: 180 --DPQLGQSILDPACGTGGFLTCAIEHLNKQVKNNDDRQRLQDSIHGVEKKPLPHMLAMT 237

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            +++  ++         NI+  +TLS+ L      +R    ++NPPFG     ++D +E 
Sbjct: 238 NVMLHGIDV------PTNIRHDNTLSRPLKNYSPKERVDIIITNPPFGG---MEEDGIEN 288

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                   R      + +D   LF+  + + L+      G+AA+VL    LF        
Sbjct: 289 NFPRKYQTR------ETAD---LFMALIMHLLKHDT---GKAAVVLPDGFLFGEGTK--- 333

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           + ++R LLE   +  IV LP  +F        ++ L  +
Sbjct: 334 TTLKRELLEEFNLHTIVRLPKGVFAPYTSIATIFCLLKK 372


>gi|134302158|ref|YP_001122127.1| N-6 DNA methylase family [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049935|gb|ABO47006.1| N-6 DNA Methylase family [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 482

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E Y+           +    G     +            
Sbjct: 32  LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKGADGKLDVINADTGDDLLE 91

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 92  IVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S IYE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+    S +++   
Sbjct: 402 KNKPIQFEHFAEFLEIWQSRKLTYNSWIVNVAD 434


>gi|75909478|ref|YP_323774.1| putative RNA methylase [Anabaena variabilis ATCC 29413]
 gi|75703203|gb|ABA22879.1| Putative RNA methylase [Anabaena variabilis ATCC 29413]
          Length = 479

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/496 (16%), Positives = 174/496 (35%), Gaps = 58/496 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E     + + Y +     +   ++   +       +   L         
Sbjct: 33  MIFLKVFDAR-EEEYELLEDNYKSPIPEGLRWRNWAADSEG----ITGDGLLDFVDNALF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +D    +     F      ++   L+ ++    + ++ +         S 
Sbjct: 88  QTLKELRTTATDARGQMIGKV-FEDAYNYMKNGTLIRQVINKLNEVDFNKKDQKK-QFSE 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A ++ TPR V       +           P +   ++DP CGTG
Sbjct: 146 IYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPACGTG 193

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A++++        +P        G E +P    +CV  +++  ++         +
Sbjct: 194 GFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILHGIDV-------PS 246

Query: 276 IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  +TL    +D    +R    ++NPPFG     ++D +E            P   +  
Sbjct: 247 AEHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL+ +A+ L+     GGR AIVL    LF        + I+  LL++  +  IV 
Sbjct: 295 ETADLFLVLIAHLLKE----GGRGAIVLPDGTLFGEGVK---TRIKEKLLQDCNLHTIVR 347

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T L   +  +  E             + +      K + I  ++   
Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTETIWYY-----EHPYPAGYKSYSKTKPICFEEFAP 402

Query: 452 ILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
             + + +RE  +F+  +           + +  P ++                   +L  
Sbjct: 403 EQEWWDNREENEFAWQVSIADLKANNYNLDIKNPHKVDVEHADLDEMLAAHQKLMAELGE 462

Query: 510 LHQSFWLDILKPMMQQ 525
           +      ++++ +   
Sbjct: 463 VRSKLKFELMEALEGN 478


>gi|332184236|gb|AEE26490.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Francisella cf. novicida 3523]
          Length = 482

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/453 (20%), Positives = 160/453 (35%), Gaps = 69/453 (15%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L               E Y+          ++    G     +            
Sbjct: 32  LFLKFLNDYENEKSLEAELTGEDYIFVLDEKYRWNTWAAPKGADGKLDVINADSGDDLLE 91

Query: 95  NTRNNLESYIASF---SDNAK----AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K     I   F+F     R+     L  +      +    
Sbjct: 92  FVNKELFPYLKSFKSIDEDVKSLKYKIGAIFEFLD--NRIASGHTLRDVINEIDELNF-N 148

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S +YE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 149 KKEDLYQLSQVYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI 257

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   S NI + +TL KD   L    R+   L+NPPFG K +               
Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYDIILANPPFGGKEKATIQTNF-------- 302

Query: 322 GRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  P  S+   +LFL H+   L+     GGR  +V+    LF  +  +    +++ 
Sbjct: 303 -------PIKSNATELLFLQHIYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKE 349

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LLEN  +  IV+LP  +F   + + T +        E     +        +        
Sbjct: 350 LLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGSTTDIFYYEVNPPYKLT----- 401

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K + I  +   + L+I+ SR+  + S ++    
Sbjct: 402 KNKPIQFEHFDEFLEIWQSRKLTENSWIVKVED 434


>gi|146294608|ref|YP_001185032.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
 gi|145566298|gb|ABP77233.1| N-6 DNA methylase [Shewanella putrefaciens CN-32]
          Length = 549

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 189/517 (36%), Gaps = 83/517 (16%)

Query: 3   EFTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLL-RRLECALEPTRSAVREKYL 60
           EF     +L + +    A    G+    +F   I+  T L + L          + +   
Sbjct: 5   EFQQKTKTLIDSLKSICANYGLGN-DGNEFK--IITQTFLYKFLNDKFAFEAKKLDDNIA 61

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------TRNNLESYIASFSDNAKAI 114
                   L +  +              + L   +      ++ N   +   F D    I
Sbjct: 62  KADKWEEVLAAMSEGDLDMLQLQMGGDTARLKPQHFISHLFSQQNAPDFAKLFDDTLIDI 121

Query: 115 --------------------FEDFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTVPDR 153
                               F+    S  IA   K       I                 
Sbjct: 122 AITNNDVFAVKTDGGAKVVLFDRI--SQYIADESKRDAFCRAIINKLVEFSFERIFTQKF 179

Query: 154 VM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
              + I+E+LI+ + S       ++ TP  V  +   +L+       +       + YDP
Sbjct: 180 DFYATIFEYLIKDYNSNAGGKYAEYFTPHAVARIMAEILVP----KAQRGTVRNVSCYDP 235

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + G+G  L +  + + +             + Q++  ++  +         L  +     
Sbjct: 236 SAGSGTLLMNVAHAIGEN--------RCSIYTQDISQKSSNLLR-----LNLILNNLVHS 282

Query: 273 SKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             N+ QG+T+        +KD    KRF Y +SNPPF   +   +D ++ +  N    RF
Sbjct: 283 IPNVIQGNTIQHPYHVESTKDGKALKRFDYIVSNPPFKLDFSDYRDELDSKANNE---RF 339

Query: 325 GPGLP--KISDGSM-----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             G+P     D        LFL H+   L+      G+AA+V+ +   F       + +I
Sbjct: 340 FAGIPKAPPKDKDKMAIYSLFLQHIIASLKP----NGKAAVVVPTG--FITAQSGIDKKI 393

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L++N ++  +V++P+++F  T     +  +        +GKV LI+A++L   I++ 
Sbjct: 394 REHLVKNKMLAGVVSMPSNIFATTGTNVSILFIDAN----NKGKVVLIDASNLGEKIKDG 449

Query: 438 GKKRRIINDDQRRQILDIYVSRENGK--FSRMLDYRT 472
             ++ +++ ++ ++I+D++ + ++ +  FS  +DY  
Sbjct: 450 KNQKTVLSYEEEQRIIDVF-NFKDAEEGFSVAVDYDD 485


>gi|315038773|ref|YP_004032341.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|312276906|gb|ADQ59546.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1112]
          Length = 522

 Score =  165 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 146/431 (33%), Gaps = 71/431 (16%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVM--------------SNIYEHLIRRFGSEVS 171
           ++  A LL K   +   I    D V    +               ++YE+L+ +  +   
Sbjct: 132 KIPSAELLSKAVDSLDSIYETMDKVQKDELAQENKDRNDKPDVQGDLYEYLLSKLSTAG- 190

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                F TPR ++ +   L+          +P     + DP CGT GFL  A  ++ +  
Sbjct: 191 -RNGQFRTPRHIIKMMVKLM----------NPTPDDKIADPACGTSGFLVAAAEYLKNNP 239

Query: 232 SHHKI----------PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              K               +  G +++     +    M+   +        + NIQ   +
Sbjct: 240 ETEKEIFFNREKRNYYKSDMFTGYDMDGTMLRIGAMNMMTHGI-------TNPNIQYRDS 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           LS        +   L+NPPF  K   D D V                 K     +LFL  
Sbjct: 293 LSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLLKVC---------KTKKTELLFLAL 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
               L++    GGR A ++    LF   +      IR+ L+E + +EA++++P+ +F   
Sbjct: 342 FLRMLKV----GGRCACIVPDGVLF--GSSRAHKAIRKQLVEENRLEAVISMPSGVFKPY 395

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--- 457
             ++T + I +         KV   + T       +   KR  +++D    I++ +    
Sbjct: 396 AGVSTAILIFTKT-NHGGTDKVWFYDMTADGY---SLDDKRTKVDEDDIPDIIERFNNLD 451

Query: 458 ---SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               R+  + S  +D +        +                  E  +          + 
Sbjct: 452 EETDRKRTEKSFFVDKKEIVDNGYDLSINRYKEIEYVPVKYPPTEDILAEIMKLDDEANK 511

Query: 515 WLDILKPMMQQ 525
            L  LK M+++
Sbjct: 512 NLQELKNMLEK 522


>gi|323143494|ref|ZP_08078177.1| putative type I restriction-modification system, M subunit
           [Succinatimonas hippei YIT 12066]
 gi|322416779|gb|EFY07430.1| putative type I restriction-modification system, M subunit
           [Succinatimonas hippei YIT 12066]
          Length = 545

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/547 (14%), Positives = 187/547 (34%), Gaps = 87/547 (15%)

Query: 29  TDFGKVILPFTLL-RRLECAL-EPTRSAVREKYLAFGG--------SNIDLESFVK-VAG 77
            ++  V++    L + L        +  + E               S+ + E     +  
Sbjct: 32  NEY--VVIVQIFLYKFLNDKFIYSAKKEMPELVEDGKDIYDSLSAMSDDEYEELCDLMED 89

Query: 78  YSFYNTS---EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST-------IARL 127
               N      +        N    L+S +   +   + +F   +   +       I+ L
Sbjct: 90  TVILNREHLIPFVSQRRNDDNFAKILDSTMEGIASLNQEVFYIVNEDDSRVPIIHPISDL 149

Query: 128 ------EKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180
                 +K      +  + S               S I+E+L++ + S       ++ TP
Sbjct: 150 ISGGATKKNAFCKSLIDDISSFSFETIFDAGYDFFSTIFEYLLKDYNSNGGGTYAEYYTP 209

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V ++   LL+D               +YDP  GTG  L    + + +           
Sbjct: 210 HSVANIMARLLVDDGKD------YRSMKIYDPAAGTGTLLIALAHAIGE--------RKC 255

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-----RFHYC 295
             + Q++  ++  + +  +++  +      +   ++ +G+T++      +     +F + 
Sbjct: 256 AVYTQDISEKSSTMLMLNLILNGM-----AESLTHVIKGNTMTHPFHKDENGKLKQFDFV 310

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLEL 348
           +SNPPF   +   ++ ++    N    RF  G+PKI +         + F  H+   +  
Sbjct: 311 VSNPPFKLDFSDYQNQLKT---NDPFKRFFAGVPKIPNKKKESMEIYLCFFQHVIASIRD 367

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSG-ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                GR AIV+ +  L    A SG   +IR++L++N  ++ +V++P+++F  T     +
Sbjct: 368 A----GRGAIVVPTGFL---TAQSGIPLKIRQYLVDNKFLKGVVSMPSNIFANTGTNVSV 420

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------- 460
             +              I+A+ L   I++   K+ ++ +    +I+  +   +       
Sbjct: 421 VFIDKAGVNNP----IFIDASKLGDEIKDGKNKKTVLKNVDIEKIVSTFHDAKAVDELSV 476

Query: 461 ----NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
               +   S    +    Y  +K+          ++      E   T        ++   
Sbjct: 477 LPSLDDIKSNNYSFSAGQYFEVKIEHIDITEEEFNQKIKEYTETLDTLFAEGKELEANIK 536

Query: 517 DILKPMM 523
             LK + 
Sbjct: 537 TALKRLK 543


>gi|227511525|ref|ZP_03941574.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085259|gb|EEI20571.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
          Length = 343

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 117/293 (39%), Gaps = 45/293 (15%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY-----LAFGGSNIDL 69
           +W  A DL G+   ++F   IL     R L   ++   + + +        A+   +   
Sbjct: 19  LWAIANDLRGNMDASEFRNYILGLIFYRFLSERVQMYANQLLQNDSYTFSEAYQDEDYRD 78

Query: 70  ESFVKV-AGYSFYNTSEYSLSTLGSTNTRNNLE-------------SYIASFSD-NAKAI 114
           +   ++ +   F+   +    ++       N +             S I   S+ + K +
Sbjct: 79  DLVAEIKSSLGFFIEPKALFDSMIQHIQAGNFDIEMLQDSINEVQSSTIGQESEDDFKGL 138

Query: 115 FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           FED D +S  +RL     E++ L+ K+  N + I+ H + +   V+ + YE+LI +F + 
Sbjct: 139 FEDMDLAS--SRLGSTVAERSELIAKVMMNLADIDFHENELKIDVLGDAYEYLIGQFAAT 196

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + A +  TP+ V  + + L+    +         +RT+YDPT G+G  L    ++   
Sbjct: 197 AGKKAGELYTPQQVSKVLSQLVTLNREE--------VRTVYDPTMGSGSLLLRVGDYAK- 247

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                    +   +GQEL   T+ +    ML+  +         + + +  + 
Sbjct: 248 ---------VAEYYGQELNGTTYNLARMNMLMHGINYSRFDLRQEILWKMISF 291


>gi|325686956|gb|EGD28980.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK72]
          Length = 534

 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 180/435 (41%), Gaps = 55/435 (12%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASF 107
             +                  K    +FY   E +L+ +   N        + ++ I  F
Sbjct: 77  EDIGTATAQLKPEQFIETLHRKQNEDNFYEIFEATLNQIAIDNNDIFSVHTDGDTAIRLF 136

Query: 108 SDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            +  + I ++   SS   ++ +A   LL +I   F               S ++E++I+ 
Sbjct: 137 DE--RLITDNISDSSKRNQVARAIINLLARI--KFDETIFS---QGFDFFSTLFEYMIKD 189

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +  +      ++ TP  V  +   +L+  D             +YDP+ G+G  L +  +
Sbjct: 190 YNKDGGGKYAEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLAS 242

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +               + Q++  ++     + +L   L  +  +    NI QG+T+  +
Sbjct: 243 RI--------GVDKTTVYSQDISQKS-----SNLLRLNLILNGLQHSIHNIVQGNTIIAN 289

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LF 338
               ++  Y +SNPPF   + + +D V  E       RF  G+PK    S   M    LF
Sbjct: 290 RHP-EKMDYIVSNPPFKLDFSEWRDQV--ETLLDASERFFAGVPKVPAKSKDKMAIYELF 346

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+   L+      G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F
Sbjct: 347 VQHIIYSLKSD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIF 400

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T     +  +  +     +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ 
Sbjct: 401 ATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIK 456

Query: 459 RENGK-FSRMLDYRT 472
           +E  + FS  + Y  
Sbjct: 457 KEAVEDFSVTVSYDD 471


>gi|226952351|ref|ZP_03822815.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244]
 gi|226836903|gb|EEH69286.1| type I restriction enzyme, M protein [Acinetobacter sp. ATCC 27244]
          Length = 493

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/519 (15%), Positives = 173/519 (33%), Gaps = 92/519 (17%)

Query: 38  FTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGY-------SFYNT-SEYSL 88
              +RRL+   +   + A R K           +  ++ + +       + YNT      
Sbjct: 35  LLFIRRLDEIQITKEKKANRLKREVEQPIFTPEQDNLRWSKFITLGDAATLYNTMGNKVF 94

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + S  T +N      ++S + K     F        +    LL K+    + + +   
Sbjct: 95  PFIKSLGTEDN-----TTYSHHMKD--ARF-------TIPTPALLTKVVDLIAAVPMD-- 138

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   +IYE+++ +     +     F TPR ++ +   L+          SP    T
Sbjct: 139 --DKDTKGDIYEYMLGKIA--SAGRNGQFRTPRHIIKMIVELM----------SPKPTDT 184

Query: 209 LYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGML 260
           + DP CGT GFL  A  ++ D             K        G + +     +    M+
Sbjct: 185 ICDPACGTAGFLVAASEYLNDHYSTEIFANPEAAKRFSEETFFGYDFDSTMLRIGSMNMM 244

Query: 261 IRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHK 317
           +  +E       +  I+   +LS+       ++   L+NPPF      E     ++   K
Sbjct: 245 LHGVE-------NPRIENRDSLSEVHSHIESKYSLILANPPFAGSLDNESCAKNIQAVIK 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             +                   +            GGRAA+++    LF   + +    +
Sbjct: 298 TKKTE-----------------LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHKAL 338

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R+ ++E   +EAI+++P+ +F     ++T + I +   +     KV   +         +
Sbjct: 339 RQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY---S 394

Query: 437 EGKKRRIIND-----DQRRQILDIYVS------RENGKFSRMLDYRTFGYRRIKVLRPLR 485
              KR  ++      +    I+  + +      R+  + S ++D          +     
Sbjct: 395 LDDKRNELDSSKHENNNIPDIIARFHNLASESGRKATEQSFLVDKIDIAANGYDLSINRY 454

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              + ++         +   +L        ++ LK M++
Sbjct: 455 KEVVYEQVEYEAPSKILADLELLEQDILKGMNELKEMLK 493


>gi|304311154|ref|YP_003810752.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301796887|emb|CBL45099.1| Type I restriction-modification system methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 475

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/483 (18%), Positives = 170/483 (35%), Gaps = 90/483 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILP---FTLLRRLECALEPTRSAVRE 57
           M + TG+ +          ++L            IL       L+         +    E
Sbjct: 15  MRQDTGTGS----------DELR-----------ILQLGWMLFLKIFSD-----KDEELE 48

Query: 58  KYLAFGGSNIDLESFV-----KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
                  S I  E           G +     ++    L    +  +L +       N +
Sbjct: 49  LLDDSYRSPIPAELRWVEWAGDDEGMTGDELLQFVDRKLFPALSNIDLST------GNRR 102

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           A+     F++    ++    L ++    + I+    +    +   IYE  +     + + 
Sbjct: 103 AVLVHEVFANNYNYMKSGIHLRQVINKLNKIDF-NSSKDLHLFGQIYETFLSEL--QSAG 159

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
              +F TPR +    T ++          +P    T+ DP CGTGGF+T  + H+    S
Sbjct: 160 TLGEFYTPRAITQFMTEMV----------APKQGETVLDPACGTGGFITAVIEHLKASAS 209

Query: 233 H--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288
               +        G E +P  + +    +++  +       ++ +IQ G +L + L    
Sbjct: 210 SVAEREAIGHNVRGWEYKPLPYMLANTNLILHDI-------ITPSIQFGDSLQRPLSEYS 262

Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              R    ++NPPFG         V   ++N     +     +  + + LFL+ + + ++
Sbjct: 263 RKDRVDVIIANPPFG-------GVVSNNNENNFPQSY-----RTKESADLFLILMMHLMK 310

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406
                GGRAAIVL    L  G     +  IR+ LLE+  +  IV LP  +F    ++AT 
Sbjct: 311 D----GGRAAIVLPDGSL-TGD--GVKQRIRQKLLEDCNLHTIVRLPNSVFQPYASVATN 363

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           L   +  +  +           + + +      K + I   +   +   +V RE    + 
Sbjct: 364 LLFFTKGEPTKNIWYY-EHKLPEGYKAY----SKTKPIQLAEFDTLKQWWVKREESDQAW 418

Query: 467 MLD 469
            +D
Sbjct: 419 QVD 421


>gi|296448296|ref|ZP_06890189.1| N-6 DNA methylase [Methylosinus trichosporium OB3b]
 gi|296254211|gb|EFH01345.1| N-6 DNA methylase [Methylosinus trichosporium OB3b]
          Length = 512

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 138/408 (33%), Gaps = 70/408 (17%)

Query: 38  FTLLRRLECALEPTRSAV------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              ++RL+   E             E+ +   G++   E +  +    F + +   +  +
Sbjct: 35  LIFIKRLDEMQENEERKATTLRRKLERRIFPEGADARGEPYENLRWSRFKHFAGPEMFRI 94

Query: 92  GSTNTRNNLESYIAS----FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
              +        +      ++ + +     F   S       A LL K+    S IE+  
Sbjct: 95  VDEHVFP-FIRALNGDGGAYARHMRD--ARFQIPS-------AQLLAKVVDKLSQIEMG- 143

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    ++YE+++ +     +     F TPR ++ L   L+           P    
Sbjct: 144 ---DRDTKGDVYEYMLVKIA--SAGQNGQFRTPRHIIALMVELM----------QPRPED 188

Query: 208 TLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILV---PHGQELEPETHAVCVAGML 260
            + DP  GT GFL  A  ++           K+         +G + +P    +    M 
Sbjct: 189 AICDPAAGTCGFLVAAGEYLRKHHSGLFRDAKLRAHFHERLFNGFDFDPTMLRIGAMNMA 248

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +  +E       + N+    +L++D      R+   L+NPPF    + +  A        
Sbjct: 249 LHGVE-------NANVAYRDSLAEDHSEDAGRYSLVLANPPFAGSLDYETTAA------- 294

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              R      K         +            GGRAA+++    LF   +     ++RR
Sbjct: 295 -DLRQIVKTKKTE-------LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSKAHKDLRR 344

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426
            L+E + +EA+V LP+ +F     ++T + + +          V   +
Sbjct: 345 LLVEENKLEAVVKLPSGVFRPYAGVSTAILVFTRT-GVGGTDHVWFYD 391


>gi|315612674|ref|ZP_07887586.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
 gi|315315261|gb|EFU63301.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis ATCC 49296]
          Length = 534

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 180/426 (42%), Gaps = 55/426 (12%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFE 116
                +      +    +FY T E +L+ +   N        + ++ I  F +  + I +
Sbjct: 86  LKPDQLIETLHRQQNETTFYETFENTLNQIAIDNNDIFSVHTDGDTAIRLFDE--RLITD 143

Query: 117 DFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               SS    + KA   LL ++   F               S ++E++I+ +  +     
Sbjct: 144 TISDSSKRNEVAKAIINLLARV--KFDETIFS---QGFDFFSTLFEYMIKDYNKDGGGKY 198

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP  V  +   +L+  D             +YDP+ G+G  L +  + +       
Sbjct: 199 AEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI------- 244

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   + Q++  ++     + +L   L  +  +    NI QG+T+  +    ++  Y
Sbjct: 245 -GVDKTTVYSQDISQKS-----SNLLRLNLILNGLQHSIHNIVQGNTIIANRHP-EKMDY 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLE 347
            +SNPPF   + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+
Sbjct: 298 IVSNPPFKLDFSEWRDQVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLK 355

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     +
Sbjct: 356 PD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSI 409

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
             +  +     +  V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E  + FS 
Sbjct: 410 LFIDKK----NKDDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSV 465

Query: 467 MLDYRT 472
            + Y  
Sbjct: 466 TVSYED 471


>gi|332366399|gb|EGJ44150.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK355]
          Length = 534

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/431 (19%), Positives = 179/431 (41%), Gaps = 47/431 (10%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             +                  K     FY T E +L+ +      NN    + +  D A 
Sbjct: 77  EDIGTATAQLKPEQFIETLHRKQNEDDFYETFENTLNQI---AIDNNDIFSVHTDGDTAI 133

Query: 113 AIFEDFDFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSE 169
            +F++   + TI+   K   + K I    + ++   D         S ++E++I+ +  +
Sbjct: 134 RLFDERLITDTISDSSKRNEVAKSIINLLARVKFDEDIFSQGFDFFSTLFEYMIKDYNKD 193

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                 ++ TP  V  +   +L+  D             +YDP+ G+G  L +  + +  
Sbjct: 194 GGGKYAEYYTPHSVAKIIADILVGHDQ-------PSNVRIYDPSAGSGTLLMNLASRI-- 244

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        + Q++  ++  +         L  +  +    NI QG+T++ +    
Sbjct: 245 ------GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTITANRHP- 292

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHL 342
           ++  Y +SNPPF   + + +D V  E       RF  G+PK    S   M    LF+ H+
Sbjct: 293 EKMDYIVSNPPFKLDFSEWRDRV--EALPEASERFFAGVPKVPAKSKDKMAIYELFVQHI 350

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T 
Sbjct: 351 IYSLKDD----GQAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTG 404

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
               +  +  +     +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E  
Sbjct: 405 TNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIIETFIQKEAV 460

Query: 463 K-FSRMLDYRT 472
           + FS  + Y  
Sbjct: 461 EDFSVTVSYED 471


>gi|295101714|emb|CBK99259.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 510

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 133/405 (32%), Gaps = 54/405 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +L KI      +    D     +  ++YE+++ +  +        F TP+ +  +   L+
Sbjct: 147 VLQKIITELDDL-YEHDIADLDMQGDLYEYMLGKLATAG--QNGQFRTPKHIREMMVELV 203

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQ 245
                      P    T+ DP CGT GFL  A  ++ +                    G 
Sbjct: 204 ----------QPTPDDTICDPACGTAGFLVSAAEYIRNHYEDTMTSEQWEHFAGDAFTGF 253

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + +     +    +++  +           I    ++SK      +F  CL+NPPF  K 
Sbjct: 254 DTDRTMLRISAMNLMLHSI-------SHPEIDYKDSVSKQNQISDKFTMCLANPPF--KG 304

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             D +++    K          +       +LFL      L+      G+ A ++    L
Sbjct: 305 TVDAESINDNLK---------AVTNTKKTELLFLALFLRMLKKS----GQCACIVPDGVL 351

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
           F   +      IR+ L+EN  + A++++P+ +F     ++T + + +          V  
Sbjct: 352 F--GSSKAHKAIRKELVENHQLRAVISMPSGVFKPYAGVSTAVLVFTKT-GAGGTENVWF 408

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRI 478
            +   + +   +   KR  + ++    I+  +        R+  + S  +  +       
Sbjct: 409 YD---MKSDGFSLDDKRSEVAENDIPDIIKRFHHLDQEADRKRTEQSFFVPKQEIADNDY 465

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            +                     +       L  +  L  L+ M+
Sbjct: 466 DLSINKYKKVEYVPVEYPSTAELMADLHELELEITAGLAELEEML 510


>gi|298674148|ref|YP_003725898.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287136|gb|ADI73102.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 482

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/450 (19%), Positives = 173/450 (38%), Gaps = 59/450 (13%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFS-STIARLEKAGLLYK-ICKNFSGIELHPDTVPD 152
           N  NN    +   +   K +F+  DF  + +  +     ++K I  + S IEL+     +
Sbjct: 81  NLLNNAFEELEMKNPEIKGVFDSLDFESNELGNVHHKNEIWKSIIDSLSSIELYN---EN 137

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
              +  +E L             D  TPR + +L   LL    D           T+Y+P
Sbjct: 138 LEPNYDFERLF------------DVFTPRKLAYLVVKLLNIDKD----------MTVYEP 175

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            C  G FL  + N++ +C            +GQ    E + +    + +   +    +  
Sbjct: 176 FCTLGTFLVRSGNYIKECTGE---FDEPYLYGQSPNKE-YRLTTM-LNLYFNDFFKAQVK 230

Query: 273 SKN-IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           S N I     L++D    ++F   L + P  K W  +        K     RF  G+P  
Sbjct: 231 SGNLIFNPQFLTEDGDGVRKFDRVLGSYPIIKDWGYEF------AKYDPYRRFSYGVPPQ 284

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAI 390
             G   ++ H+   L+      G   +++ ++ L        E++I++ +L+ +DLIE++
Sbjct: 285 KKGDYAYIEHMVASLKKD----GMMGVLVPNNSLSR--TNEKETKIKQLMLKRDDLIESV 338

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           ++LP  +   T  +  L I++  K EERR +V  I+A+  +   R     R +I      
Sbjct: 339 ISLPPKVLRSTATSYSLLIINKNKREERRNQVLFIDASREYRP-RKTEVTRNVIKYKHID 397

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL---ARLEADITWRKL 507
            I+  Y S ++      +         + + +  + +F LD +       +E+D+     
Sbjct: 398 NIVSTYQSFKDEDNFSSV---------VPIEKIEKHNFSLDVSSYILPEPIESDVINPND 448

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           +        +    ++  I+    A +  K
Sbjct: 449 ALSRLREIQNDKNELINNIHDTYSALNLDK 478


>gi|161870101|ref|YP_001599271.1| hypothetical protein NMCC_1140 [Neisseria meningitidis 053442]
 gi|161595654|gb|ABX73314.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 533

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/561 (17%), Positives = 205/561 (36%), Gaps = 66/561 (11%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQTKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        I+++     + +K      Y +        + L      +        FS 
Sbjct: 59  ENPDEPIEFINMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E E       RF  G+PKI        
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR  L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREHLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDKVVLIDASGLGEKIKDGKNQKTVLSREEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            + +  ++  + FS ++     GY  IK       +    +  +  ++      K     
Sbjct: 449 CNTFTHKQAVEDFSVVV-----GYDEIKAKNYSLSAGQYFEVKIDYVDISAEEFKQRMAG 503

Query: 512 QSFWLDILKPMMQQIYPYGWA 532
            S  LD L     ++      
Sbjct: 504 FSADLDKLFAESAKLEKEIKD 524


>gi|158520840|ref|YP_001528710.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158509666|gb|ABW66633.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 493

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/524 (17%), Positives = 174/524 (33%), Gaps = 83/524 (15%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +        LE    +    +L +     D E         F N   +     
Sbjct: 34  MFFLKIFDDREAELELLEDDYQSPLPDHLRWRAWAKDPEGMTGEELADFVNAQLFP---- 89

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
              + ++ L+  I         +  +  F      ++   L+ ++      I+       
Sbjct: 90  ---HLKDKLK--IQGLQGKRAMVIRNV-FEDAYNYMKSGTLMRQVINKICEIDF-NTQKD 142

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                +IYE +++   S  +  A +F TPR V       +           P +  T+ D
Sbjct: 143 RHTFGHIYEQILKDLQSAGN--AGEFYTPRAVTQFIVNRV----------DPKLSETVLD 190

Query: 212 PTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGTGGFLT  + H  D     +  +        G E +   H +CV  M++  ++   
Sbjct: 191 PACGTGGFLTGTIKHKRDHYVKTTEDEKILQASISGVEKKALPHMLCVTNMILNGVD--- 247

Query: 269 RRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                 +I+  +TLS   KD     R +  ++NPPFG     ++D +E            
Sbjct: 248 ---TPVSIRHDNTLSRPYKDYGEKDRVNVIVTNPPFGG---MEEDGIENNF--------- 292

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
           P   +  + + LFL  +   L+     GGRAAIVL    LF        + ++  LL   
Sbjct: 293 PATFRTRETADLFLALIIKLLKK----GGRAAIVLPDGFLFGEGMK---TRLKETLLAEC 345

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            +  IV LP  +F   T I T L   +     E+            +        K + +
Sbjct: 346 NLHTIVRLPNGVFNPYTGIKTNLLFFTKGTPTEQIWYY-----EHPYPEGAKSYNKTKPM 400

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
                     ++   E        + + F  R+         ++ +    +     ++  
Sbjct: 401 ----------LFEEFEPEIKWWGSEAKNFKTRKETAQ-----AWKVSAEDIVARNYNLDI 445

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
           +   P          + ++ Q        + +++ +K+  A  L
Sbjct: 446 KN--PHVAEQEDRDPQKLLAQYQAQQKEIADLQDQLKAILADAL 487


>gi|327183905|gb|AEA32352.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 522

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/431 (17%), Positives = 145/431 (33%), Gaps = 71/431 (16%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVM--------------SNIYEHLIRRFGSEVS 171
           ++  A LL K   +   I    D V    +               ++YE+L+ +  +   
Sbjct: 132 KIPSAELLSKAVDSLDSIYETMDKVQKDELAQENKDRNDKPDVQGDLYEYLLSKLSTAG- 190

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230
                F TPR ++ +   L+          +P     + DP CGT GFL  A  ++ +  
Sbjct: 191 -RNGQFRTPRHIIKMMVKLM----------NPTPDDKIADPACGTSGFLVAAAEYLKNNP 239

Query: 231 ---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                              +  G +++     +    M+   +        + NIQ   +
Sbjct: 240 ETEKEIFFNKEKRNYYKSDMFTGYDMDGTMLRIGAMNMMTHGI-------TNPNIQYRDS 292

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           LS        +   L+NPPF  K   D D V                 K     +LFL  
Sbjct: 293 LSDKNADHDEYSLILANPPF--KGSLDYDTVSDSLLKVC---------KTKKTELLFLAL 341

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
               L++    GGR A ++    LF   +      IR+ L+E + +EA++++P+ +F   
Sbjct: 342 FLRMLKV----GGRCACIVPDGVLF--GSSRAHKAIRKQLVEENRLEAVISMPSGVFKPY 395

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV--- 457
             ++T + I +         KV   + T       +   KR  +++D    I++ +    
Sbjct: 396 AGVSTAILIFTKT-NHGGTDKVWFYDMTADGY---SLDDKRTKVDEDDIPDIIERFNNLD 451

Query: 458 ---SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
               R+  + S  +D +        +                  E  +          + 
Sbjct: 452 KEIDRKRTEKSFFVDKKEIVDNGYDLSINRYKEIEYVPVKYPPTEDILAEIMKLDDEANK 511

Query: 515 WLDILKPMMQQ 525
            L  LK M+++
Sbjct: 512 NLQELKNMLEK 522


>gi|294676867|ref|YP_003577482.1| type I restriction-modification system RcaSBIIIP subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294475687|gb|ADE85075.1| type I restriction-modification system RcaSBIIIP, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 481

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 106/528 (20%), Positives = 175/528 (33%), Gaps = 98/528 (18%)

Query: 38  FTLLRRLEC---ALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LST 90
              L+ ++    ALE TR          L +     D E        SF N   +  L  
Sbjct: 33  MFFLKIVDDQDEALELTRDDYTSPIPADLQWRAWAADPEGMTGDQLLSFVNEELFPGLKG 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           L     R              + +FED ++F      ++   LL ++    + I+   + 
Sbjct: 93  LRPATPRA----------RTIRDVFEDAYNF------MKSGQLLRQVINKINEIDF-NNL 135

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
              +   +IYE L+     + +  A ++ TPR V       +           P     +
Sbjct: 136 SERQHFGDIYEQLLNDL--QNAGNAGEYYTPRAVTAFMVERI----------DPRPGEIV 183

Query: 210 YDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            DP CGTGGFLT AM H+         H+          E +P  H +CV  ML+  +E 
Sbjct: 184 MDPACGTGGFLTCAMRHMRARHIRLPEHEDAMQRSLRAVEKKPLPHMLCVTNMLLNGIEE 243

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                    ++  +TL++        +R    L+NPPFG K            ++G    
Sbjct: 244 PHF------VRHDNTLARPLTSWTRDERVDIVLTNPPFGGKE-----------EDGIENN 286

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F     +  + + LFL  +   L+     GGRAA+VL    LF       ++ ++  L+ 
Sbjct: 287 FP--TFRTRETADLFLALIIRLLKP----GGRAAVVLPDGSLF---GEGIKTRLKEHLMA 337

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +  IV LP  +F    +I T L                    T  W     EG+K  
Sbjct: 338 ECNLHTIVRLPNSVFKPYASIGTNLLFFEKGTPTTE---------TWFWEHRVPEGQKAY 388

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR----L 498
            +    R   L        G             R  +V  P   ++ +    +      L
Sbjct: 389 SMTKPIRLDHLAGCADWWGG-----------ATREGRVEGP--QAWKVSAEEIKARGYNL 435

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
           +      +   L     L  L  + +         + +KE +    A+
Sbjct: 436 DIKNPHAEAEDLGDPEHL--LAALDEAEAEVTRLRAALKEILTEALAR 481


>gi|227889875|ref|ZP_04007680.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849739|gb|EEJ59825.1| type I site-specific deoxyribonuclease [Lactobacillus johnsonii
           ATCC 33200]
          Length = 517

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 141/388 (36%), Gaps = 55/388 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V  ++YE+L+ +  +        F TPR ++ +   L+          +P +   + DP
Sbjct: 170 DVRGDVYEYLLGKLSTAG--RNGQFRTPRHIIKMMVELM----------NPQVTDKICDP 217

Query: 213 TCGTGGFLTDAMNHVADCGSHH---KIPPILVPH-----GQELEPETHAVCVAGMLIRRL 264
             GT GFL +A   + D        +       H     G + +     +    ML   +
Sbjct: 218 AAGTAGFLVEAAEFLQDKRKEEIFYRKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGV 277

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           +       + NI+   +LS+       +   ++NPPF  K   D D+V K+         
Sbjct: 278 D-------NPNIEYQDSLSEQNTDRDEYSLIMANPPF--KGSLDYDSVSKDLLK------ 322

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              + K     +LF+      L++    GGR A ++    LF   +      IR+ ++EN
Sbjct: 323 ---ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVLF--GSSKAHKSIRKEIIEN 373

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + +EA++++P+ +F     ++T + I +         KV   + T       +   KR  
Sbjct: 374 NNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYDMTADG---FSLDDKRTP 429

Query: 444 INDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           + ++    I++ +        R+    S M+D +        +                 
Sbjct: 430 VKENDIPDIIERFNHLDKEVDRKKTDKSFMVDKKDIVDNDYDLSINRYKEIEYKPVEYPP 489

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ 525
            E  I   +      +  L  LK +++ 
Sbjct: 490 TEEIIAEIEKLDKEANDALQELKALLKD 517


>gi|126665400|ref|ZP_01736382.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
 gi|126630028|gb|EBA00644.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
          Length = 317

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 112/315 (35%), Gaps = 51/315 (16%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--KYLAFG 63
              A+L   IW  A D+ G     DF + +L     R +         A  +   Y A  
Sbjct: 5   QQRAALQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFALYIEAGDDSINYAALS 64

Query: 64  GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------- 107
              I     +  ++  GY  Y  S+   +   + N+  +L + +A+              
Sbjct: 65  DEVITPDIKDDAIRTKGYFIY-PSQMFANVAKNANSNESLNTDLAAIFAAIEASASGYPS 123

Query: 108 SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV------MS 156
            D+ K +F   DF +T  RL     +K   L  + K  +G++   +              
Sbjct: 124 EDDIKGLFA--DFDTTSNRLGNTVKDKNLRLAAVLKGVAGLDFGHNFYEKSDAAQIDLFG 181

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + YE LI  + +   +   +F TP+ V  L   L +    ++ K        +YDP CG+
Sbjct: 182 DAYEFLISNYAANAGKSGGEFFTPQHVSKLIAQLAMHKQTSVNK--------IYDPACGS 233

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A  HV                GQE+   T+ +    M +  +  D       NI
Sbjct: 234 GSLLLQATKHVGPHFIEEG------FFGQEINHTTYNLARMNMFLHNINYDKF-----NI 282

Query: 277 QQGSTLSKDLFTGKR 291
           Q G+TL    F   +
Sbjct: 283 QLGNTLIDPHFLDDK 297


>gi|261404907|ref|YP_003241148.1| N-6 DNA methylase [Paenibacillus sp. Y412MC10]
 gi|261281370|gb|ACX63341.1| N-6 DNA methylase [Paenibacillus sp. Y412MC10]
          Length = 489

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 154/455 (33%), Gaps = 64/455 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS-----FYNTSEYSLSTLG 92
              +R L+      +    E   A  G  +     +   G S     F N     +  + 
Sbjct: 35  LMFIRSLD-----EKDLESEMTEALTGETMPKVFPLDEEGQSMRWSKFKNKDPREIFNIV 89

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
            T     +++ +   ++ A   F  +     +  +    +L KI      +    D    
Sbjct: 90  GTKVFPYIKN-LNGTNETA---FSRY-MQDAMFLIPTPQVLQKIITGLDEL-YEHDIKDL 143

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE+++ +  +        F TP+ +  +   LL          +P     + DP
Sbjct: 144 DMQGDLYEYMLGKLATSG--QNGQFRTPKHIRDMMVRLL----------APTPDDKICDP 191

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQELEPETHAVCVAGMLIRRLES 266
            CGT GFL  +  ++ +                    G + +     +    +++  +  
Sbjct: 192 ACGTAGFLISSAEYIREKYEAEMTSEQWEHFAGEMFSGFDTDRTMLRLSAMNLMLHSIN- 250

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   NI    ++SK   T   +   L+NPPF      D +++    K         
Sbjct: 251 ------QPNIDYVDSVSKQNETASEYDIVLANPPFTGTV--DAESIHDNLKT-------- 294

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +       +LF+      L+     GGR A ++    LF          +R+ L+EN  
Sbjct: 295 -ICNTKKTELLFVALFLRILQK----GGRCACIVPDGVLF--GTTKAHKSLRKELVENHQ 347

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++A++++P+ +F     ++T + I +         KV   +         +   KR  I 
Sbjct: 348 LQAVISMPSGVFKPYAGVSTAILIFTKT-DAGGTDKVWFYDMQADGY---SLDDKRSPIE 403

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
            +    IL+ + +  + +  R    ++F   +  +
Sbjct: 404 ANDIPDILNRFHN-IDAEADRKPTEQSFLVEKSVI 437


>gi|148927925|ref|ZP_01811332.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147886728|gb|EDK72291.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 339

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 145/383 (37%), Gaps = 59/383 (15%)

Query: 10  SLANFIWKNAEDLWGDFKHTDFGKV---ILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           SL   +W     L  D     +G     I     L+  +   +P             G++
Sbjct: 5   SLVQKVWNYCNLLRDDGLS--YGDYLEQITYLLFLKMADEYSKP---------PFNRGTH 53

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
           I  +   +            SL  L  +N   +    + +       +     F +   R
Sbjct: 54  IPTDINWQ------------SLRNLTGSNLEAHYIEVLQNLGKQP-GMLGQIYFKAQ-NR 99

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           ++    L+++     G       +   V   IYE L+ +F S+   GA  + TPR ++  
Sbjct: 100 IQNPAQLHRLVGLIDGETWV--GLDVDVKGEIYEGLLEKFASDTKTGAGQYFTPRPLIQA 157

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPIL-VP 242
            T  L           P   +T+ D   GTGGF     +++A+        K        
Sbjct: 158 MTECL----------RPEPSKTMADFAAGTGGFFLAFYDYIAEHYDLNKDQKDFLKYKTF 207

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G E+ P T  +C+  + +  +      D    I    +L+ D  +GKRF Y L NPPFG
Sbjct: 208 TGNEIVPATARLCLMNLFLHNI---GDMDSKPPIHLTDSLASD--SGKRFDYILMNPPFG 262

Query: 303 KKWE--KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           KK       +   +  ++    R        S+  + F+ H+ ++L++     G+AA+++
Sbjct: 263 KKSSITVSNEDGTQSKESLTYERQDFWTT-TSNKQLNFVQHICSQLKVD----GKAAVIV 317

Query: 361 SSSPLFNGRAGSGESEIRRWLLE 383
             + LF G A  GE+ IR+ LL+
Sbjct: 318 PDNVLFEGGA--GET-IRKKLLQ 337


>gi|311109506|ref|YP_003982359.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans
           A8]
 gi|310764195|gb|ADP19644.1| N-6 adenine-specific DNA methylase 3 [Achromobacter xylosoxidans
           A8]
          Length = 492

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 83/464 (17%), Positives = 164/464 (35%), Gaps = 87/464 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLG 92
              ++RL+        +VREK  A  G  I+   F        ++  +      +L  L 
Sbjct: 35  LLFIKRLDEIH-----SVREKKAARLGKPIEEPVFSPEQQNLRWSVFKQLGDAATLYDLV 89

Query: 93  STNT---RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           +         L    ++++ + K     F        +    LL K+      I +    
Sbjct: 90  ANQVFPFIKTLGEADSTYATHMKD--ARF-------TIPSPALLAKVVDMLDAIPMD--- 137

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +     +     F TPR ++ L   ++          +P    T+
Sbjct: 138 -DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIKLMVEMM----------APKPADTI 184

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCVAGMLI 261
            DP CGT GFL  A  ++     +         K       HG + +     V    ML+
Sbjct: 185 CDPACGTAGFLVAAAEYLQHHHRNEIYTDQASAKRFNHDTFHGFDFDSTMLRVGSMNMLL 244

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E       +  I+   +LS+     + +F   L+NPPF    + +  A + +     
Sbjct: 245 HGVE-------NPAIENRDSLSESHAGVEGQFSLILANPPFAGSLDYESTAQDLQRMV-- 295

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    K     +LFL      L+     GGRAA+++    LF   +      +R+ 
Sbjct: 296 ---------KTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKTLRQM 340

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E   ++AI+++P+ +F     ++T + + +   +     +V   +         +   
Sbjct: 341 LVEEQKLDAIISMPSGVFRPYAGVSTAVMLFTKTNSG-GTDRVWFYDMRADGY---SLDD 396

Query: 440 KRRIIND-----DQRRQILDIYVS------RENGKFSRMLDYRT 472
           KR  ++      D    IL  + +      RE  + S ++    
Sbjct: 397 KRNELDHAKHENDNLPDILSRWQNQSREAGRERTEQSFLVPKDE 440


>gi|327490536|gb|EGF22317.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1058]
 gi|332362946|gb|EGJ40735.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK49]
          Length = 534

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 94/542 (17%), Positives = 207/542 (38%), Gaps = 73/542 (13%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAFGGSNIDL--ESFVKVAGYSFY 81
           +  ++   +L  + L + L         AV  K  Y      ++D        +   +  
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQ 85

Query: 82  NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123
              E  + TL      +N     E+ +   + +   IF              E     + 
Sbjct: 86  LKPEQFIETLHRKQNEDNFYEIFETTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDNI 145

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               ++  +   I    + I+             S ++E++I+ +  +      ++ TP 
Sbjct: 146 SDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   +L+  D             +YDP+ G+G  L +  + +              
Sbjct: 206 SVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKTT 250

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNPPF
Sbjct: 251 VYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGGG 354
              + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+      G
Sbjct: 305 KLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD----G 358

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     +  +  + 
Sbjct: 359 QAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK- 415

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
               +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E  + FS  + Y   
Sbjct: 416 ---NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTVSYDDI 472

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQQIYPY 529
             +   +         +D   +   E +        KLS L Q     + + + +Q+   
Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQSH-ALEQEIEEQMKGL 531

Query: 530 GW 531
            +
Sbjct: 532 KY 533


>gi|126179042|ref|YP_001047007.1| N-6 DNA methylase [Methanoculleus marisnigri JR1]
 gi|125861836|gb|ABN57025.1| N-6 DNA methylase [Methanoculleus marisnigri JR1]
          Length = 505

 Score =  164 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/520 (15%), Positives = 176/520 (33%), Gaps = 85/520 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RLE      ++  R + + +     + E   + + +  Y   +  +      + R
Sbjct: 36  LIFMKRLEDMDGVEQNRARARGVPYTSVFEEHEE-CRWSSWKHYPAEQMLV------HVR 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           + +  +I S  +  K +F        +  + K  LL +       + +           +
Sbjct: 89  DKVFPFIQSLHNGEKTLFAQ-QMRDAVFMIPKPSLLQEAVALIDEMNIT--AQNRDTQGD 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE+L+ +  +        F TPR ++ +   L+           P +   + DP CGT 
Sbjct: 146 IYEYLLSQLSTAGK--NGQFRTPRHIIRMIVELV----------DPDITDRICDPACGTA 193

Query: 218 GFLTDAMNHVADCG-------------------------SHHKIPPILVPHGQELEPETH 252
           GFL ++  H+                              H +       +G + +    
Sbjct: 194 GFLINSYEHIIRKYTSPDLLEVDDEGEYHNLIGDNITDQKHWEKLWSDTFYGFDFDSTMT 253

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            + +  +++  ++       + +I+   TLSK     +R+   L+NPPF           
Sbjct: 254 RISLMNLMLHGIK-------APHIELKDTLSKRYTEEERYTVVLANPPFKGSI------- 299

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
               K+        G  K     +L +  +   L      GG+  +++    LF   +  
Sbjct: 300 ---DKSDINDSLSLGTTKT---ELLLVERMIQLL----TIGGKCGVIVPDGVLF--GSSR 347

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431
              E+RR LLE + +E IV++P+ +F     ++T + I        + GKV   +     
Sbjct: 348 AHKELRRMLLEENQLEGIVSMPSGIFKPYAGVSTAVLIFVKG---GKTGKVWFYDMEADG 404

Query: 432 TSIRNEGKKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
               +   KR  I+       I++ +  R +       D +   +  + V      ++ L
Sbjct: 405 Y---SLDDKRTFIDGKGDIPDIIERFRERRDT---NPTDRKAKCFY-VPVEEIQANNYDL 457

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             +    +E +    +   +       +   + Q +    
Sbjct: 458 SISRYKEIEYEEVEYEPPEVIIDKIQALESQIQQNLEELK 497


>gi|32477069|ref|NP_870063.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
 gi|32447617|emb|CAD79218.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
          Length = 552

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 153/431 (35%), Gaps = 65/431 (15%)

Query: 35  ILPFTLLRRLECA--LEPTRS----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           I     ++RL+    LE  ++       E  +   G +    S+  +    F +     +
Sbjct: 72  ITYLLFIKRLDDLHTLEENKANRTKKPMENRIFPEGKDEKKRSYEDLRWSRFKHFEPKEM 131

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + + +    L +     S   K              +    LL ++      + +   
Sbjct: 132 FDVVNEHVFPFLRTLGGDGSTYTK------HMKDARFTIPTPALLARVVDMIDQVPME-- 183

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   ++YE+++ +     +     F TPR ++ L   L +          P     
Sbjct: 184 --DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIELMVELTV----------PTPTDV 229

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP CGT GFL  A  ++ +            K     + HG + +     +    ML+
Sbjct: 230 ICDPACGTAGFLVVAGEYLREKHPEVLRDAKLKKHFHGDMFHGFDFDSTMLRIGSMNMLL 289

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E       + +I    +L+++     +R+   L+NPPF    + +  A +       
Sbjct: 290 HGVE-------NPDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAKDL------ 336

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + K     +LFL      L+     GGRAAI++    LF   +      +R+ 
Sbjct: 337 -----LQIVKTKKTELLFLTLFLRLLKP----GGRAAIIVPDGVLF--GSSKAHKTLRKM 385

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E+  ++ I+++P  +F     ++T + + +   +   +  V   +   +    ++   
Sbjct: 386 LVEDQKLDGIISMPGGVFKPYAGVSTAIVLFTKTNSGGTK-HVWFYD---MQADGKSLDD 441

Query: 440 KRRIINDDQRR 450
           KR  +   +++
Sbjct: 442 KRTELLPPEKQ 452


>gi|257437917|ref|ZP_05613672.1| putative type I restriction-modification system, M subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257199577|gb|EEU97861.1| putative type I restriction-modification system, M subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 510

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 152/477 (31%), Gaps = 94/477 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +R L+      +    E +    G  ++       AG S         S     ++R
Sbjct: 35  LMFIRSLD-----EKELATEDFENMAGEKMEHIFPASAAGQS------MRWSRFKDKDSR 83

Query: 98  NNLESYIASFSDNAKAI----FEDFDFSSTIARLEKA----------------------- 130
               +         K +      DFD +  +  +E                         
Sbjct: 84  EIFLTMQQRVFPAIKKMKYGRLPDFDANGELVEIEDDPTRPDEGNTAFARYMDDAMFLIP 143

Query: 131 --GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
              +L KI      +    D     +  ++YE+++ +     +     F TP+ +  +  
Sbjct: 144 TPQVLQKIITGLEDL-YTHDIADLDMQGDLYEYMLLKLS--SAGRNGQFRTPKHIRDMMV 200

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH----- 243
            L+           P     + DP CGT GFL  +  ++                     
Sbjct: 201 ELV----------QPTPDDFICDPACGTAGFLVSSAQYLRAHYEDSMTSEQWQHFAGPMF 250

Query: 244 -GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G +++     +    +++  +        +  I    ++SK      ++  CL+NPPF 
Sbjct: 251 TGFDMDRTMLRISAMNLMLHSI-------TNPEIDYKDSVSKQNSICSKYTICLANPPF- 302

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K   D +++  + K          +       +LFL      L+     GGR A ++  
Sbjct: 303 -KGTVDAESINDDLK---------AVTNTKKTELLFLALFLRMLKT----GGRCACIVPD 348

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421
             LF   +      IR+ L+EN  + A++++P+ +F     ++T + + +         K
Sbjct: 349 GVLF--GSSKAHQSIRKELIENHQLRAVISMPSGVFKPYAGVSTAVLVFTKT-GAGGTDK 405

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY------VSRENGKFSRMLDYRT 472
           V   +   +     +   KR  + ++    I+  +        R+  + S  +    
Sbjct: 406 VWFYD---MKADGFSLDDKRTEVKENDIPDIIARFQNLDAETDRKCTEQSFFVPKEE 459


>gi|148976555|ref|ZP_01813251.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3]
 gi|145964131|gb|EDK29388.1| hypothetical protein VSWAT3_11336 [Vibrionales bacterium SWAT-3]
          Length = 542

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 178/471 (37%), Gaps = 74/471 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
             ++F  +I    L + L          +  K  +         +               
Sbjct: 29  DASEFK-IITQVFLYKLLNDKFTYETKQIEPKLASSDNWEQAFIALSDDEREMLAMQLPA 87

Query: 87  SLSTLGSTN------TRNNLESYIASFSDNAKAI--------------------FEDFDF 120
             + L   +       + N   +   F D  + I                    FE    
Sbjct: 88  DAAELKQEHFISTLFAKQNEADFAKLFDDTLRDISMLNSDTFSVMTDSGEKVALFESISE 147

Query: 121 SSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             T+++ +     +      FS   +         +  I+E+LI+ + S       ++ T
Sbjct: 148 YVTVSKRDDFCRAIINSLAEFSFERIFTQKYDFYAV--IFEYLIKDYNSNSGGKYAEYYT 205

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V  +   +L+  +     +      + YDP+ G+G  L +  + + +          
Sbjct: 206 PHAVARIMANILVPEEQ----QGKISNVSCYDPSAGSGTLLMNVAHAIGE--------SR 253

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYC 295
                Q++  ++  +         L  +       N+ +G T+           K+F Y 
Sbjct: 254 CSIFTQDISKKSSNLLR-----LNLILNNLVHSIPNVIEGDTMRHPHHKDGAALKQFDYI 308

Query: 296 LSNPPFGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLE 347
           +SNPPF   + +  + +E KEHK     RF  G+PK+   +        LFL H+ + L+
Sbjct: 309 VSNPPFKLDFSEIHEELEGKEHKK----RFFAGVPKVPAKAKDKMAIYQLFLQHIIHSLK 364

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+AA+V+ +  +    A S + +IR+ L++N ++  +V++P+++F  T     +
Sbjct: 365 E----NGKAAVVVPTGFI---TAKSIDMKIRKHLIDNKMLAGVVSMPSNIFATTGTNVSI 417

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             +        +G V L++A++L T I+    ++ +++D + +QI++++ +
Sbjct: 418 LFID----ACNKGDVVLVDASNLGTKIKEGKNQKTVLSDLEEQQIIEVFNN 464


>gi|312278102|gb|ADQ62759.1| Putative HsdM [Streptococcus thermophilus ND03]
          Length = 534

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 98/512 (19%), Positives = 203/512 (39%), Gaps = 64/512 (12%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFV----KVAGYSFYNTSEYSLSTLGSTN--- 95
           RL    E     + E            +       K     FY T E +L+ +   N   
Sbjct: 63  RLVSMSEEDYDWLLEDIGTSTAWMKPNQFIETLHRKQNESDFYETFENTLNQIAIDNNDI 122

Query: 96  --TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVP 151
                + ++ I  F +  + I +    SS    + KA   LL ++   F           
Sbjct: 123 FSVHTDGDTAIRLFDE--RLITDTISDSSKRNEVAKAIINLLARV--KFDETIFS---QG 175

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
               S ++E++I+ +  +      ++ TP  V  +   +L+  D             +YD
Sbjct: 176 FDFFSTLFEYMIKDYNKDGGGKYAEYYTPHSVAKIIADILVGNDQ-------PSNVRIYD 228

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ G+G  L +  + +               + Q++  ++  +         L  +  + 
Sbjct: 229 PSAGSGTLLMNLASRI--------GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQH 275

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK- 330
              NI QG+T+  +    ++  Y +SNPPF   + + +D VE   +  E  RF  G+PK 
Sbjct: 276 SIHNIVQGNTIIANRHP-EKMDYIVSNPPFKLDFSEWRDQVETLPEASE--RFFAGVPKV 332

Query: 331 --ISDGSM----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              S   M    LF+ H+   L+      G+AA+VL +   F       + +IR+ L++N
Sbjct: 333 PAKSKDKMAIYELFVQHIIYSLKPE----GQAAVVLPTG--FITAQSGIDKKIRQHLVDN 386

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++  +V++P+++F  T     +  +  +     +G V LI+A++L T ++    ++ ++
Sbjct: 387 QMLAGVVSMPSNIFATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVL 442

Query: 445 NDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           + ++ ++I++ ++ +E  + FS  + Y     +   +         +D   +   E D  
Sbjct: 443 SPEEEQKIVETFIKKEAIEDFSVTVSYEDIKEKNYSLSAGQYFDIKIDYVDITAEEFDAK 502

Query: 504 W----RKLSPLHQSFWLDILKPMMQQIYPYGW 531
                 KLS L Q     + + + +Q+    +
Sbjct: 503 MTAFQDKLSDLFQQSH-ALEQEIEEQMKGLKY 533


>gi|218690008|ref|YP_002398220.1| putative HsdM; type I restriction modification enzyme methylase
           subunit [Escherichia coli ED1a]
 gi|330000674|ref|ZP_08303787.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3]
 gi|218427572|emb|CAR08468.2| putative HsdM; type I restriction modification enzyme methylase
           subunit [Escherichia coli ED1a]
 gi|328537910|gb|EGF64096.1| N-6 DNA Methylase [Klebsiella sp. MS 92-3]
          Length = 557

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 87/551 (15%), Positives = 181/551 (32%), Gaps = 100/551 (18%)

Query: 35  ILPFTLLRRLECA---LEPTRSAVREKY-LAFGGSNIDLESFVKVAGYSFYN---TSEYS 87
           I     ++RL+      +       EKY   F G+ I  E   +           T  +S
Sbjct: 34  ITYLLFMKRLDELDHKRQDEGETSGEKYISKFAGTWIPPEERNRPVAEQHPIDKRTLRWS 93

Query: 88  -LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIE 144
               L       ++   +  F  +      +F     + +  + K+ LL +  K    I 
Sbjct: 94  EFKKLQPEEMLQHVRDKVFPFLKDLNGAESNFTHHMKNAVFIIPKSALLVEAVKAIDEIF 153

Query: 145 LHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
                           +  ++YE L+    +        F TPR ++ L   L+      
Sbjct: 154 EMMKRDSQEKGQAFQDIQGDVYEFLLSEIATAGK--NGQFRTPRHIIKLMADLV------ 205

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVA----------------------------- 228
                P + + + DP CGTGGFL  A  ++                              
Sbjct: 206 ----QPQLGQRIADPACGTGGFLLGAYQYILTQLSLSQNLKRDNSKGSTHDEDGFFRTSV 261

Query: 229 --DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   +I      +G +++     + +  +++  ++         +I    TLSK  
Sbjct: 262 TAALTKKARILLQESLYGYDIDATMVRLGLMNLMMHGID-------EPHIDYQDTLSKSY 314

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               ++   L+NPPF      D+  + +  K              +   +LF+ ++   L
Sbjct: 315 SEETKYDIVLANPPFTGSI--DRGDINENLKL-----------STTKTELLFVENIYRLL 361

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405
           +     GG A +++    LF   +G    E+R+ L+E   ++A++ LP+ +F     ++T
Sbjct: 362 KK----GGTACVIVPQGVLF--GSGKAFKELRQTLVERCDLKAVITLPSGVFKPYAGVST 415

Query: 406 YLWILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIIN-DDQRRQILDIYVS 458
            + + S       + ++     V     +       +   KR  +      + I+  Y S
Sbjct: 416 AILLFSKVFGPGDKISKPATDYVWFYEMSSDGY---SLDDKRNKLEGYGDLQDIIQKYHS 472

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           R+    +       F   RI +             +     ++ +     L  L Q+   
Sbjct: 473 RDEASDTDRTAKC-FMVPRIDIEAENYDLSLSRYKEEIFEEVQYEQPEAILERLIQAEVG 531

Query: 517 DILKPMMQQIY 527
           ++ K ++ ++ 
Sbjct: 532 NVDKKVLNKVQ 542


>gi|311113527|ref|YP_003984749.1| type I restriction-modification system DNA-methyltransferase
           [Rothia dentocariosa ATCC 17931]
 gi|310945021|gb|ADP41315.1| type I restriction-modification system DNA-methyltransferase
           [Rothia dentocariosa ATCC 17931]
          Length = 502

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/519 (15%), Positives = 171/519 (32%), Gaps = 77/519 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSN-IDLESFVKVAG-----YSFYNTSEYSL 88
           I     +R L+   E  R       +     N +  +   +        ++F N S  ++
Sbjct: 32  ITYLLFVRFLDD--EQLRQEEMANSIRVHDPNYVLEDPVFRPEDENLRWHNFKNESPAAM 89

Query: 89  STLGSTNT---RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
               +         L + +   S +      +  F      +    LL K+    S I +
Sbjct: 90  YETVANGVFPFIKGLGARLGGESSSYTQHMREARF-----TIPTPALLAKVVDPLSAIPM 144

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                      +IYE+++ +  +        F TPR ++HL   ++          +P  
Sbjct: 145 D----DRDTNGDIYEYMLSKIAASG--TNGQFRTPRHIIHLMVDMV----------APTA 188

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAG 258
             T+ DP CGT GFL  A  +V +            +     + HG + +     +    
Sbjct: 189 ADTICDPACGTAGFLVAANEYVREHSVQELTNTVALRHYHNDMFHGFDFDSTMLRIASMN 248

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +L+  +++         ++   +LS+      +++   L+NPPF    + ++ A      
Sbjct: 249 LLMHGVKNPL-------VEYRDSLSEGAAGESEKYSLILANPPFTGSIDYEQTA------ 295

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                R      K     +LFL      L+     GGRAA ++    LF   + +   ++
Sbjct: 296 -----RDLQSTVKTKKTELLFLALFLRLLKP----GGRAAAIVPDGVLF--GSSTAHKKL 344

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN--ATDLWTSI 434
           R+ L+E+  ++A+V+LP+ +F     ++T +   +   +      V   +  A       
Sbjct: 345 RKMLVEDQKLDAVVSLPSGVFKPYAGVSTAILFFTKTNSG-GTDDVWFYDVQADGFSLDD 403

Query: 435 RNEGKKRRIINDDQR---------RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           +    K   + D  +          Q       R   + S  +       +   +     
Sbjct: 404 KRAPVKANDLPDVLKRWTALRGDDEQAAKAEHERARTEQSFCVPKSEIAEQGYDLSLNRY 463

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                ++         I   +         +  LK +++
Sbjct: 464 KEIQYEEVEYRSPTEIIAELENLDEQIRVSMAELKELLK 502


>gi|322386251|ref|ZP_08059883.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus cristatus ATCC 51100]
 gi|321269713|gb|EFX52641.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus cristatus ATCC 51100]
          Length = 536

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 179/426 (42%), Gaps = 55/426 (12%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASFSDNAKAIFE 116
                +      +    +FY   E +L+ +   N        + ++ I  F +  + I +
Sbjct: 86  LKPDQLIESLHRQQNEATFYEIFENTLNQIAIDNNDIFSVHTDGDTAIRLFDE--RLITD 143

Query: 117 DFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               SS    + KA   LL ++   F               S ++E++I+ +  +     
Sbjct: 144 TISDSSKRNEVAKAIINLLTRV--KFDETIFS---QGFDFFSTLFEYMIKDYNKDGGGKY 198

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP  V  +   +L+  D             +YDP+ G+G  L +  + +       
Sbjct: 199 AEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI------- 244

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   + Q++  ++  +         L  +  +    NI QG+T+  +    ++ +Y
Sbjct: 245 -GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMNY 297

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLE 347
            +SNPPF   + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+
Sbjct: 298 IVSNPPFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLK 355

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     +
Sbjct: 356 SD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIFATTGTNVSI 409

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
             +  +     +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E  + FS 
Sbjct: 410 LFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSV 465

Query: 467 MLDYRT 472
            + Y  
Sbjct: 466 TISYED 471


>gi|281177459|dbj|BAI53789.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 545

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 81/509 (15%), Positives = 179/509 (35%), Gaps = 71/509 (13%)

Query: 3   EFTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---RSAVREK 58
           EF     +L + +    A    G+    +F  +I    L + L          +      
Sbjct: 5   EFRDKTKALIDSLKSICANYGLGN-DGNEFK-IITQAFLYKFLNDKFAFEAKQKDKSIAS 62

Query: 59  YLAFGG----------SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
             ++              +        A    ++   Y  +   + +     +  +   +
Sbjct: 63  AESWEDALSAMSEDQLKKLQQRMAPDTARLKPHHFIRYLYNRQNAADFARTFDDTLMDIA 122

Query: 109 DNAKAIF--------EDFDFSSTIARLEK----AGLLYKICKNFSGIELHPDTVPDRVM- 155
                +F        +   F      +            I    +               
Sbjct: 123 ATNNDVFAVKTDGGAKVVLFERLSQYIADESKRDDFCRAIINKLADFSFERIFTQKFDFY 182

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + I+E+LI+ + S       ++ TP  V  +   +L+         +     + YDP+ G
Sbjct: 183 ATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMAEILVPKAQQGVVRN----VSCYDPSAG 238

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L +  + + +               Q++  ++ ++         L  +       N
Sbjct: 239 SGTLLMNVAHAIGE--------DRCSIFAQDISQKSSSLLR-----LNLILNNLVHSIPN 285

Query: 276 IQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           + QG+T+           KRF Y +SNPPF   +   +DA++ +       RF  G+PKI
Sbjct: 286 VIQGNTILHPFHKDGGALKRFDYIVSNPPFKMDFSDFRDALDSKENQQ---RFFAGIPKI 342

Query: 332 SDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              +        LFL H+   L+     GG+AA+V+ +   F       +  IR  L++N
Sbjct: 343 KAKARDKMEIYQLFLQHIIFSLKP----GGKAAVVVPTG--FITAQSGIDKGIREHLVQN 396

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++  +V++P+++F  T     +  +        + KV LI+A++L   +++   ++ ++
Sbjct: 397 KMLAGVVSMPSNIFATTGTNVSILFID----ASNKEKVVLIDASNLGEKVKDGKNQKTVL 452

Query: 445 NDDQRRQILDIYVS-RENGKFSRMLDYRT 472
            + + ++I + + +      FS ++ Y  
Sbjct: 453 TECEEKRICEAFNNKWSEEDFSVVVSYDD 481


>gi|294676509|ref|YP_003577124.1| type I restriction-modification system RcaSBIP subunit M
           [Rhodobacter capsulatus SB 1003]
 gi|294475329|gb|ADE84717.1| type I restriction-modification system RcaSBIP, M subunit
           [Rhodobacter capsulatus SB 1003]
          Length = 489

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 93/490 (18%), Positives = 160/490 (32%), Gaps = 80/490 (16%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           K       N+      ++ G          L  LG+++ + N            K +F D
Sbjct: 52  KLEERLPPNLRWGELKRLEGEQRLIRYRAMLLELGTSD-KFNF--------PLVKQVFTD 102

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                    L KA  L  +      ++ +     +  + ++YE L+ R  SE    A  +
Sbjct: 103 AK-----TSLTKATALTSLITTIDTVDWY--AAEEDGLGDLYEGLLERTTSERKSKAGQY 155

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++     L+           P +   + DP  GTGGFL  A   +          
Sbjct: 156 FTPRPLIETIIHLM----------KPKVGEVIQDPAAGTGGFLIAAHRAIMRDTDDLTTV 205

Query: 238 PILVPHGQE--------LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
           P  V   Q         L   TH +    +L+  ++          I     L+ D    
Sbjct: 206 PKDVAFAQRNGKYQGAELITGTHRLNTMNLLLHGIDQP--------IDPIDALTSDAKKF 257

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
                 L+NPPF    +  +     +       R          G + F+ H+   L++ 
Sbjct: 258 DPADLILTNPPFN---KFPESVARDDFVITAEAR---------KGPLPFVEHVIRGLKV- 304

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GGRAAIV+  + LF     S   ++R W+++   +  I+ LPT +F+   + T +  
Sbjct: 305 ---GGRAAIVVPDNTLFE---DSMGRDLRNWMMDLCDLHTILRLPTGIFYAQGVKTNVIF 358

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD--------------- 454
           L+  K+EER G  + +   DL   + N GK R +   D    I                 
Sbjct: 359 LTK-KSEERVGATKAVWFYDLRAQMPNFGKTRTLTTADFEPFIAAYGDDPHGKSPRIDEG 417

Query: 455 ---IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
               +      + S+  D     + R  V          D    A +       +     
Sbjct: 418 EAGRFRKFTRDEISKRNDNLDVTWLRDDVEVVEEGLTEPDDIASAIIGHLRAALEEIEAV 477

Query: 512 QSFWLDILKP 521
                ++ + 
Sbjct: 478 ADELAEVAEA 487


>gi|32477086|ref|NP_870080.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1]
 gi|32447634|emb|CAD79235.1| type I restriction enzym, M protein [Rhodopirellula baltica SH 1]
          Length = 552

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 152/431 (35%), Gaps = 65/431 (15%)

Query: 35  ILPFTLLRRLECA--LEPTRS----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           I     ++RL+    LE  ++       E  +   G +    S+  +    F +     +
Sbjct: 72  ITYLLFIKRLDDLHTLEENKADRTKKPMENRIFPEGKDEKKRSYEDLRWSRFKHFEPKEM 131

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + + +    L +     S   K              +    LL ++      + +   
Sbjct: 132 FDVVNEHVFPFLRTLGGDGSTYTK------HMKDARFTIPTPALLARVVDMIDQVPME-- 183

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   ++YE+++ +     +     F TPR ++ L   L           +P     
Sbjct: 184 --DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIELMVEL----------TAPTPTDV 229

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP CGT GFL  A  ++ +            K     + HG + +     +    ML+
Sbjct: 230 ICDPACGTAGFLVVAGEYLREKHPEVLRDAKLKKHFHGDMFHGFDFDSTMLRIGSMNMLL 289

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E       + +I    +L+++     +R+   L+NPPF    + +  A +       
Sbjct: 290 HGVE-------NPDIVYRDSLAQEHGAEEERYSLVLANPPFAGSLDYESCAKDL------ 336

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + K     +LFL      L+     GGRAAI++    LF   +      +R+ 
Sbjct: 337 -----LQVVKTKKTELLFLTLFLRLLKP----GGRAAIIVPDGVLF--GSSKAHKTLRKM 385

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E+  ++ I+++P  +F     ++T + + +   +      V   +   +    ++   
Sbjct: 386 LVEDQKLDGIISMPGGVFKPYAGVSTAIVLFTKTNSG-GTEHVWFYD---MQADGKSLDD 441

Query: 440 KRRIINDDQRR 450
           KR  +   +++
Sbjct: 442 KRTELLPPEKQ 452


>gi|218440827|ref|YP_002379156.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218173555|gb|ACK72288.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 356

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 124/367 (33%), Gaps = 52/367 (14%)

Query: 6   GSAASLANFIWKNAEDLWGD--FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
               ++   +W+ A+ L  +  +   ++   ++    LR         +  + +     G
Sbjct: 5   EQIEAIERRLWEAADTLRSNSNYASNEYFIPVMGLIFLRHAYSRFLKVKEEIEKNLPKRG 64

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTL----GSTNTRNNLESYIASFSDN---AKAIFE 116
           G    L         + +   E     L       +    L + + S  ++    + I  
Sbjct: 65  GKTRPLTKEDFSQKTAIFLKPEAQFDYLVSLKQDEDHSQALITAMESIEEDYQSLQGILP 124

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             ++           +L K+ +  +            +   IYE+ + +F +  +    +
Sbjct: 125 KAEYQDL-----DNEVLAKLLRTLN--PDELKVADGDIFGRIYEYFLTQFANLKAHDNGE 177

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V L   +L                 ++DP CG+GG    + + V      HK 
Sbjct: 178 FFTPISLVTLIANILEPDQG-----------IIFDPACGSGGMFVQSAHFVE---KQHKN 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYC 295
           P +L   G E  P T  +    + +  LE D        IQ+  T  +D F  + +  Y 
Sbjct: 224 PQMLTFRGLEKNPTTIRLAKMNLAVHGLEGD--------IQKAITYYEDPFQMEGKADYV 275

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP------KISDGSMLFLMHLANKLELP 349
           ++NPPF               K  +  R   GLP      K+S+G+ L++ +  + L   
Sbjct: 276 MANPPFNVDE-------VDADKVKKDSRLPFGLPGTNKNKKVSNGNYLWISYFYSYLNER 328

Query: 350 PNGGGRA 356
              G   
Sbjct: 329 GKAGFVM 335


>gi|313682025|ref|YP_004059763.1| n-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313154885|gb|ADR33563.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 495

 Score =  163 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 100/541 (18%), Positives = 187/541 (34%), Gaps = 87/541 (16%)

Query: 12  ANFIWKNAEDLWGDFK----HTDFGKVILPFTLLRRLECALEPTRSAVR---EKYLAFGG 64
            + I +  + L  D         + + I     L+ L    +          + Y     
Sbjct: 2   ESKINRITDILRRD-DGISGAMHYTEQISWILFLKFLNDLEDSKADEALLIGKDYNYILD 60

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA----------I 114
                 ++         +                 L SY+  F +  +           I
Sbjct: 61  DKFKWSNWAVPKVNGKIDLINAKSGADLLDFVNKELFSYLKGFKNITEDPKSIKYKIGAI 120

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           FE  D      R+     + +I      ++ H +      +S IYE L++  GS+    +
Sbjct: 121 FEYLD-----NRIANGHTIREILDIIDELDFH-NQSDLFQLSIIYEKLLKDMGSDGG-NS 173

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            +F TPR ++ + T ++          +P + +T+YDP  G+ GFL +A NH+    +  
Sbjct: 174 GEFYTPRPLIKVMTDVV----------NPQVGQTIYDPAVGSCGFLIEAYNHIRYLDAKE 223

Query: 235 KIPPI-----------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                               G E  P ++ + V  M++  +E       S NI + +TL+
Sbjct: 224 NKQRDISVNQLKFLSEDTFFGNEKTPLSYVMGVMNMILHGIE-------SPNISKTNTLT 276

Query: 284 KD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFL 339
           KD   L    R+   L+NPPFG K ++                     P  S+   +LFL
Sbjct: 277 KDIRGLEEKDRYDIILANPPFGGKEKEQIQQNF---------------PIKSNATELLFL 321

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H+ N L++     GR  +V+    LF  +  +    +++ LLE   +  I++LP+ +F 
Sbjct: 322 QHMMNSLKV----NGRCGVVIPEGVLF--QTNNAFQAVKQELLERFNVHTILSLPSGVFL 375

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             + + T +       +      +       L         K + I  D   + L ++  
Sbjct: 376 PYSGVKTNVIFFDRNGS---TSDIFYYEVNPLSKLT-----KNKPITYDHFTEFLAVWKE 427

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           R+    S +++        I    P R   I  K+ +  +E      +      +    I
Sbjct: 428 RKITDNSWIVNINDIKDFDISAKNPNRNETIDHKSPIELVENIKLNNEEINDLMNEIEAI 487

Query: 519 L 519
           L
Sbjct: 488 L 488


>gi|260906089|ref|ZP_05914411.1| N-6 DNA methylase [Brevibacterium linens BL2]
          Length = 490

 Score =  163 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 80/458 (17%), Positives = 155/458 (33%), Gaps = 66/458 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKY---LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
           I     +RRL+     T++  R  +        +    E   + +     N     +  +
Sbjct: 36  ITYLLFIRRLDEL--ETQAESRASFTGKAVENPTFGPREQDFRWSRLR--NLEPEVMYDV 91

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            S      L   +            D  F      +  A LL K+    S I +      
Sbjct: 92  VSDGVFPFLRK-LGGDGSTYGEHMRDARF-----TVPSAHLLSKVVDLLSDIPMDKRDTN 145

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                ++YE+L+ +  S        F TPR ++ L   +           +P     + D
Sbjct: 146 ----GDLYEYLLSQISSSG--TNGQFRTPRHIIDLMVKM----------SAPRPDDEICD 189

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRL 264
           P CGT GFL  A   + +                    HG + +     +    ML+  +
Sbjct: 190 PACGTAGFLVAASEQLRESHPEVFTNKEQRHFFHNSMFHGYDFDSTMLRIGSMNMLLHGI 249

Query: 265 ESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           E         +I+   +LS++     +++   L+NPPF          ++ E  + +L R
Sbjct: 250 E-------QPDIRYRDSLSENVSAEAEKYTLILANPPFAGS-------LDYEATSQDLQR 295

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               + K         +            GGRAA+++    LF   +     E+RR L+E
Sbjct: 296 ----VVKTKKTE----LLFLALFLKLLKPGGRAAVIVPDGVLF--GSSKAHKELRRMLVE 345

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              ++ +V LP+ +F     ++T +   +   +      V   +         +   KR 
Sbjct: 346 EQKLDGVVKLPSGVFKPYAGVSTAILFFTKTNSG-GTENVWFYDVRADG---FSLDDKRN 401

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
            I  +   Q+L+ +  R+  +  R    ++F   + ++
Sbjct: 402 PIEANDLPQVLERWTERDGTEKDRARTEKSFTVPKSEI 439


>gi|116250871|ref|YP_766709.1| type I restriction enzyme modification methylase subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255519|emb|CAK06596.1| putative type I restriction enzyme modification methylase subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 411

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 152/443 (34%), Gaps = 84/443 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFG 63
           +A ++   +W+    L        + + +  L     L+ +         A R +     
Sbjct: 2   NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMM---------AERNRETGSL 50

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLG-----------------STNTRNNLESYIAS 106
             ++     V+  G +       +L TLG                    T +  + Y  +
Sbjct: 51  PRSMRWADLVQANGLAKLELYRKTLVTLGTVSTRLGKDDALVLPPGENATPDERKRYADA 110

Query: 107 --FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
               +  + I     F +    + +   L  +      ++   +        ++YE L++
Sbjct: 111 RPLPEMVQEI-----FDNASTFIREPQNLTTLVTAIDELDWFSE--DRDQFGDLYEGLLQ 163

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +   E   GA  + TPR ++ L   L+           P     + DP  GTGGFL  A 
Sbjct: 164 KNAEETKRGAGQYFTPRVLIELLVRLM----------QPKPGEVIQDPAAGTGGFLIAAD 213

Query: 225 NHVADC--------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            ++               +       HG E  P T  + +  + +  ++SD       ++
Sbjct: 214 RYMRAVTDNYFDLGRKQQEFQKRHAFHGMENVPGTLRLLLMNLYLHNIDSD-------HV 266

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             G TLS       R +  L+NPPFG                            +S   +
Sbjct: 267 DLGDTLSDKGKGLGRANLILTNPPFGPAGGAPTRDDLSV------------TATVSSYQL 314

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F+ H    L+     GGRAAIV+  + LF    G    ++R+ +++   +  I+ LPT 
Sbjct: 315 PFVEHCIRALQP----GGRAAIVVPDNVLFEDGRG---RQLRQMMMDWCDVHTILRLPTG 367

Query: 397 LFFRTNIATYLWILSNRKTEERR 419
           +F+   + T +  L+  KTE   
Sbjct: 368 IFYAQGVKTNVIFLTRAKTETGT 390


>gi|302035529|ref|YP_003795851.1| type I restriction endonuclease, M subunit [Candidatus Nitrospira
           defluvii]
 gi|300603593|emb|CBK39923.1| Type I restriction endonuclease, M subunit (modular protein)
           [Candidatus Nitrospira defluvii]
          Length = 647

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 107/638 (16%), Positives = 203/638 (31%), Gaps = 110/638 (17%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHT--DFG---KVILPFTLLRRLECALEPTRSAVRE--- 57
            S  SL+ F+    + +      +   +      IL    LR L+      + A      
Sbjct: 15  ASTQSLSAFVKSICDVMRRSNCASALQYVPELTWIL---FLRILDAQEARDQEAAEAVGA 71

Query: 58  ----------------------KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
                                 +    G               + +   +  L    + +
Sbjct: 72  SFAPALRSPYRWQDWAAPPPKNEADKPGHPKTPEGKLFGWKRQALFAAGDGKLFDFINKD 131

Query: 96  TRNNLESYIASFSDNA--------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-H 146
              +L S       N         + I      +    R++    L  I      I + H
Sbjct: 132 LLPHLHSLDLDPRTNLPRSGATPKQRIIGRIMTAVERVRVDSESNLRDILDKVDEISIDH 191

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D      +S +YE L+ + G   +     F TPR+V+      +           P + 
Sbjct: 192 LDDQHFFTLSQVYEDLLLKMGE-KNSDGGQFFTPREVIRAMVHTV----------DPSLG 240

Query: 207 RTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           +T+YDP CGTGGFL  A  H+          +           G+E E     + +A ++
Sbjct: 241 QTVYDPCCGTGGFLAIAYEHIARKLGKRANSTDLDTLKHDTFFGREKENLVFPIALANLV 300

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +  ++         N+  G+ L+K            ++F   L+NPPFG K  KD     
Sbjct: 301 LHGID-------RPNLWHGNALTKRATYAALFEQAPRQFDVILTNPPFGGKEGKDAQKNF 353

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                             S   +LFL  +  +L       G  A+VL    LF     S 
Sbjct: 354 AFE--------------TSATQVLFLQDILAELAP----NGTCAMVLDEGLLFRTN-ESA 394

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E +R L++   + AIV+LP  +F      + T L   +  K   +  ++   + + + 
Sbjct: 395 FVETKRKLVDECDLWAIVSLPGGVFSTAGAGVKTNLLFFTKGK---KTQRIWYYDLSSVK 451

Query: 432 TSIRN--------EGKKRRIINDDQR-RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
              +               +++D      ++  + + E+   +R   Y     +R     
Sbjct: 452 VGKKTPLTLAHFGFAPNGTLLDDAALPASLVAEWRADESNSGTRFPSYARLLPQRGTPKG 511

Query: 483 PLRMSFILD-KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES-- 539
             R S+ +D     A+   ++             +  LK  ++++  +   E  +     
Sbjct: 512 ESRYSWTVDFAARRAKAREEMQPLMDGAAKIKAEVMDLKERLKRLRKHKAGEEALAALEV 571

Query: 540 -IKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTD 576
            I+  +     +++  + I A +      +P A  V D
Sbjct: 572 QIREKDKAARDLESQAAAIDAAVFDLKAVNPNAVTVVD 609


>gi|325697669|gb|EGD39554.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK160]
          Length = 534

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 95/542 (17%), Positives = 208/542 (38%), Gaps = 73/542 (13%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAFGGSNIDL--ESFVKVAGYSFY 81
           +  ++   +L  + L + L         AV  K  Y      ++D        +   +  
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQ 85

Query: 82  NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123
              E  + TL      +N     E+ +   + +   IF              E     + 
Sbjct: 86  LKPEQFIETLHRKQNEDNFYEIFETTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDNI 145

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               ++  +   I    + I+             S ++E++I+ +  +      ++ TP 
Sbjct: 146 SDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   +L+  D             +YDP+ G+G  L +  + +              
Sbjct: 206 SVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKTT 250

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SNPPF
Sbjct: 251 VYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGGG 354
              + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+      G
Sbjct: 305 KLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSD----G 358

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     +  +  + 
Sbjct: 359 QAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLGGVVSMPSNIFATTGTNVSILFIDKK- 415

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
               +G V LI+A++L T ++    ++ +++ ++ ++I+D ++ +E  + FS  + Y   
Sbjct: 416 ---NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVDTFIKKEAVEDFSVTVSYEDI 472

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQQIYPY 529
             +   +         +D   +   E +        KLS L Q   + + + + +Q+   
Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQSHV-LEQEIEEQMKGL 531

Query: 530 GW 531
            +
Sbjct: 532 KY 533


>gi|205356615|ref|ZP_03223377.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345472|gb|EDZ32113.1| putative Type I RM HdsM [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 473

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 182/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 11  LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 68

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 69  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 127

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 128 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 176

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 177 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 236

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+    ++   L+NPPFG K ++        
Sbjct: 237 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 287

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 288 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 328

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 329 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 383

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 384 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 441

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 442 KILRTSEEILNSLEENLKTQQEYLNELKSILK 473


>gi|54024730|ref|YP_118972.1| putative restriction-modification system methyltransferase
           [Nocardia farcinica IFM 10152]
 gi|54016238|dbj|BAD57608.1| putative restriction-modification system methyltransferase
           [Nocardia farcinica IFM 10152]
          Length = 514

 Score =  163 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/435 (17%), Positives = 156/435 (35%), Gaps = 62/435 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGS 93
           I     +RRL+   E TR+  R   LA               G   YN   +S      +
Sbjct: 32  ITYLLFIRRLDD--EQTRALERANLLAQPLEGNPFPEGNDPDGRP-YNDLRWSVFRDRHA 88

Query: 94  TNTRNNLESYIASFSDNAKA---IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
               + + + +  F    +     +  F        +   G+L ++      + +     
Sbjct: 89  EEMFDIVANRVFPFIKEMRGEDSTYAHF-MKDARLTIPNPGMLQRVVDRLDKVPMEN--- 144

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 +IYE+L+ +     +     F TPR ++ L   ++          +P    T+ 
Sbjct: 145 -RDTKGDIYEYLLAKIA--SAGQNGQFRTPRHIIELMVHMM----------APKPGDTIV 191

Query: 211 DPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
           DP  GT GFL  A  ++    +               + HG + +     +    ML+  
Sbjct: 192 DPASGTCGFLVAASEYMRAHHADAINSGAGRHHYHHKMFHGFDFDNTMLRIGSMNMLLHG 251

Query: 264 LESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +E         +I+   +L++ +    + +   L+NPPF    + +  A + +       
Sbjct: 252 IE-------QPDIRYRDSLAEANTGDAEAYSLVLANPPFAGSLDYENTAKDLQ------- 297

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                + K     +LFL      L+     GGRAA+++    LF   +     E+RR L+
Sbjct: 298 ----QIAKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRILV 347

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E   ++A+V LP+ +F     ++T +   +   +      V   +         +   KR
Sbjct: 348 EEQKLDAVVKLPSGVFKPYAGVSTAILFFTKTNSG-GTDNVWFYDVRAEGY---SLDDKR 403

Query: 442 R-IINDDQRRQILDI 455
             ++++D+   + ++
Sbjct: 404 SALLSEDKIGALAEL 418


>gi|332662758|ref|YP_004445546.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331572|gb|AEE48673.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 511

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 88/527 (16%), Positives = 175/527 (33%), Gaps = 90/527 (17%)

Query: 39  TLLRRLECALEPTRSAVREK----YLAFGGSNIDLESFVKVA----------GYSFYNTS 84
             L+ L+  LE  ++   E     Y           ++              G S     
Sbjct: 33  LFLKYLDD-LEQDKATAAELTGKPYKNIISPEFQWATWAAPKKAKAGSASEVGRSVSEVE 91

Query: 85  EYSLSTLGSTNTRN----NLESYIASF-----SDNAKAIFEDFDFSSTIARLEKAGLLYK 135
                 L   +  +     L  Y+  F     S +         FS    R++    L +
Sbjct: 92  LDHQRALTGDDLADFVNIQLFPYLKKFKTEAESPDTIEYKIGEIFSELKNRIQSGYNLRE 151

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +      +           MS++YE  I+  G        ++ TPR ++     ++    
Sbjct: 152 VINRIDELRFRTHA-EKHEMSHLYEDKIKNMG-NAGRNGGEYYTPRPLIKTIVKVV---- 205

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---------PILVPHGQE 246
                 +P + +T+YD   G+ GFL +A  ++ + G+  +                +G+E
Sbjct: 206 ------APKIGQTIYDGAVGSAGFLVEAFEYLKNGGADGRPNLSTKDVETLQKRTFYGKE 259

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGK 303
            +   + + +  M++  +E       + NI   +TL++   D+    R+   L+NPPFG 
Sbjct: 260 KKSLAYIIGIMNMILHGVE-------APNIVHTNTLAENLSDIQEKDRYDIILANPPFGG 312

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K   +                     K  + + LFL H    L+     GG+A +V+ ++
Sbjct: 313 KERAEVQQNFPI--------------KTGETASLFLQHFIKILK----AGGKAGVVIKNT 354

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L N    S    +R+ LLE   +  ++ LP   F    + T +         ++    Q
Sbjct: 355 FLSNTDNASI--SLRKLLLETCNLHTVLDLPGGTFTGAGVKTVVLFFEKGAPTQKVWFYQ 412

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE------NGKFSRMLDYRTFGYRR 477
           L          RN G K   +N+    + + +   R         + S  L  R      
Sbjct: 413 L-------NLERNLG-KTNALNEKDLAEFVALQKLRAGQVEGPETENSWNLSVRDALSGS 464

Query: 478 -IKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
                   +     +++ L + E  +   +      +  L+ +  ++
Sbjct: 465 PNTYDLSAKNPNKKEESALRQPEEILAEMRALDEESADILNAIMELI 511


>gi|262373387|ref|ZP_06066666.1| N-6 DNA methylase [Acinetobacter junii SH205]
 gi|262313412|gb|EEY94497.1| N-6 DNA methylase [Acinetobacter junii SH205]
          Length = 491

 Score =  163 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 93/503 (18%), Positives = 173/503 (34%), Gaps = 67/503 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ ++        A           +   E F      +  N    +   L      
Sbjct: 33  MLFLKVVDDR--ENELATLALLEGITFKSPIPEKFRWRNWAA--NDEGMTGDELKDFIDN 88

Query: 98  NNLESYIASFSDN-------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
               +      +N        + +     F+     ++  GL+ K+            + 
Sbjct: 89  ELFPALQNLAVENDDPRARVVQNV-----FADAYNYMKSGGLIRKVINQIQRGFDFNKSK 143

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 +IYE L+R    + ++ + +F TPR V      ++           P +  ++ 
Sbjct: 144 ERHAFGDIYEQLLRDL--QAAKNSGEFYTPRAVTTFMAQMI----------DPQLGESVL 191

Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP CGTGGFLT A+ H  +     +  +       +G E +P  H +C   M++  ++  
Sbjct: 192 DPACGTGGFLTSAIEHKRENYVQTAEDEKILQNSIYGIEKKPLPHLLCTTNMILHGIDV- 250

Query: 268 PRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   I + +TLS         KR    L+NPPFG     ++  +EK   +    R 
Sbjct: 251 -----PVKIIRDNTLSYSLNHWVKEKRVDVVLTNPPFGG---TEEQGIEKNFPSKFQTR- 301

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                   + + LF++ +   L+      GRAA+VL    +F       ++ I+  L+E+
Sbjct: 302 --------ETADLFMVLIIQLLKAH----GRAAVVLPDGFMF---GEGIKTAIKEKLMED 346

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV--QLINATDLWTSIRNEGKKR 441
             +  IV LP  +F   T+I+T +   +  K  E       QL      +   +    K 
Sbjct: 347 CNLHTIVRLPKSVFAPYTSISTNILFFTKGKKTEEVWFYEHQLPQGVKAYNKTKPLQLKE 406

Query: 442 RIINDDQRRQILDIYVSRENGKFSRML---DYRTFGYR-RIKVLRPLRMSFILDKTGLAR 497
                    +  D +  R   + +  +   D    GY   IK    +       +  LA+
Sbjct: 407 FDGLKAWWDKESDGFAGRVVNEQAWKVSLQDIIDRGYNLDIKNPHQVEEDVKDPEELLAK 466

Query: 498 LEA-DITWRKLSPLHQSFWLDIL 519
            E  +    K+    ++   + L
Sbjct: 467 YENLEAEVAKIRQQLKAILDEAL 489


>gi|293398988|ref|ZP_06643153.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62]
 gi|291610402|gb|EFF39512.1| type I restriction enzyme M protein [Neisseria gonorrhoeae F62]
          Length = 533

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 91/501 (18%), Positives = 192/501 (38%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E +       RF  G+PKI        
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKDKDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSDIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
            + + +++  + FS ++ Y  
Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469


>gi|157415771|ref|YP_001483027.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|19881217|gb|AAM00831.1|AF486546_5 HsdM [Campylobacter jejuni]
 gi|19881257|gb|AAM00864.1|AF486553_5 HsdM [Campylobacter jejuni]
 gi|157386735|gb|ABV53050.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|315931059|gb|EFV10034.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 494

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 182/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+    ++   L+NPPFG K ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILRTSEEILNSLEENLKTQQEYLNELKSILK 494


>gi|307708292|ref|ZP_07644759.1| type I restriction enzyme [Streptococcus mitis NCTC 12261]
 gi|307615738|gb|EFN94944.1| type I restriction enzyme [Streptococcus mitis NCTC 12261]
          Length = 534

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 81/422 (19%), Positives = 179/422 (42%), Gaps = 47/422 (11%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                +      +    +FY + E +L+ +      NN    + +  D A  +F++   +
Sbjct: 86  LKPDQLIETLHRQQNEATFYESFENTLNQI---AIDNNDIFSVHTDGDTAIRLFDERLIT 142

Query: 122 STIARLEKAGLLYK-ICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFM 178
            TI+   K   + K I    + ++             S ++E++I+ +  +      ++ 
Sbjct: 143 DTISDSSKRNEVAKAIINLLARVKFDESIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYY 202

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +   +L+  D             +YDP+ G+G  L +  + +           
Sbjct: 203 TPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVD 247

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               + Q++  ++  +         L  +  +    NI QG+T+  +    ++  Y +SN
Sbjct: 248 KTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSN 301

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPN 351
           PPF   + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+    
Sbjct: 302 PPFKLDFSEWRDRVESLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKPD-- 357

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+AA+VL +   F       +  IR+ L+++ ++  +V++P+++F  T     +  + 
Sbjct: 358 --GQAAVVLPTG--FITAQSGIDKAIRQHLVDHQMLAGVVSMPSNIFATTGTNVSILFID 413

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDY 470
            +     +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ +E  + FS    Y
Sbjct: 414 KK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIKKEAVEDFSVTASY 469

Query: 471 RT 472
             
Sbjct: 470 EE 471


>gi|298369796|ref|ZP_06981112.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281256|gb|EFI22745.1| type I restriction enzyme M protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 432

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 163/422 (38%), Gaps = 53/422 (12%)

Query: 136 ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +    +G              + I+E+LI+ + S       ++ TP  V  +   +L+  
Sbjct: 40  LISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGTYGEYYTPHAVARIMADILVPA 99

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
           +      S      +YDP+ G+G  L +  + + +           + + Q++  ++  +
Sbjct: 100 EVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSSNL 147

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDK 309
                    L  +       N+  G+T+            K+F + +SNPPF   +   +
Sbjct: 148 LR-----LNLILNNLVHSLNNVVHGNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSAYR 202

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGS---------------MLFLMHLANKLELPPNGGG 354
           D +E E       RF  G+PK  +                 +LF+ H+   L+      G
Sbjct: 203 DQLEGEENRE---RFFAGIPKTPNHEDKIKEKESRKKMPIFLLFIQHILFSLKE----NG 255

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AAIVL +   F       +  IR +L+EN ++  +V++P+++F  T     +  +    
Sbjct: 256 KAAIVLPTG--FITAQSGIDKRIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK-- 311

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF 473
               + +V LI+A+ L   I++   ++ +++  + ++I + +  ++  + FS ++ Y   
Sbjct: 312 --ANKDEVVLIDASGLGEKIKDGKNQKTVLSRAEEQKICNTFTHKQAVEDFSVVVGYDEI 369

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
             +   +         +D   ++  E      + S      + +  + + ++I       
Sbjct: 370 KAKNYSLSAGQYFEVKIDYVDISADEFAQKMAEFSADLDKLFTESAE-LEKEIKEKLQTL 428

Query: 534 SF 535
            F
Sbjct: 429 KF 430


>gi|294675505|ref|YP_003576121.1| type I restriction-modification system subunit M [Prevotella
           ruminicola 23]
 gi|294472887|gb|ADE82276.1| type I restriction-modification system, M subunit [Prevotella
           ruminicola 23]
          Length = 509

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 76/506 (15%), Positives = 157/506 (31%), Gaps = 88/506 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK--------VAGYSFYNTSEYS-L 88
              ++ L+      +    E      G  ++   F K              Y    +S  
Sbjct: 45  LFFIKLLDD-----KQRREESNAIEFGYELEDPLFKKGQKWTNPETNQEVPYEELRWSVF 99

Query: 89  STLGSTN----TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
            +  + N     RNN+  +I      + + +  +     +  + KA +L  +  +     
Sbjct: 100 KSFSAQNMLHHVRNNVFVFIKGIGKESGSAYSRY-MQDAVFSIPKADVLQSVVDDID--- 155

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              D      M ++YE+++ R           F TPR ++ +   +     D +      
Sbjct: 156 -LLDMEDADTMGDVYEYMLARMSE--KGQNGQFRTPRHIIRMIITMAEPKIDDVI----- 207

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELE-----PETHAVCV 256
                 DP  G+ GF+ +A   + D                +               +  
Sbjct: 208 -----CDPAMGSAGFIMEAAKQIYDQNRAVIQSNEDVRKRYYSTMFNGFDTDQTMLRIGA 262

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             ML+  +        S NI+   +LS+D     R+  C++NPPF  K            
Sbjct: 263 MNMLLHGI-------PSPNIKYQDSLSEDNTDQSRYTLCVANPPFSGKV----------- 304

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             G + +    +   +   +LF+      L++    GGR   V+    LF          
Sbjct: 305 LKGTISKSLLSIANTNATELLFVALFVRSLKV----GGRCFSVVPDGVLF--GNDKAHMA 358

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           IR+ L++   + A++++P  +F   + ++T + + +         KV      ++     
Sbjct: 359 IRKELVDKQCLRAVISMPAGVFQPYSGVSTAILVFTKT-DAGGTDKVWFY---EMRGDGF 414

Query: 436 NEGKKRRIINDDQRRQILDIY------VSRENGKFSRMLDYRTFG----------YRRIK 479
               KR   +DD    +L  +        R     S ++                Y+ + 
Sbjct: 415 TLNAKRTPCSDDDIPDLLQRWQHLDAETDRTRKDQSFLVPVDEIRQNDYDLTFNKYKEVV 474

Query: 480 VLRPLRMSFILDKTGLARLEADITWR 505
             + +          +  LE     +
Sbjct: 475 REKVVYDDPKDVFARIEALETQFAAK 500


>gi|20091245|ref|NP_617320.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
 gi|19916364|gb|AAM05800.1| site-specific DNA-methyltransferase (adenine-specific), subunit M
           [Methanosarcina acetivorans C2A]
          Length = 420

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 44/267 (16%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             +     F TPR V+ L   L           SP     + DP CGT GFL  A  H+ 
Sbjct: 68  ATAGQNGQFRTPRHVIRLMVEL----------TSPQPTDIICDPACGTAGFLVCAGEHLR 117

Query: 229 DCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +   +        +     + HG + +     +    ML+  +E       + +I+   +
Sbjct: 118 EHHPNILHDEKLKQHFHRGMFHGFDFDNTMLRIGSMNMLLHGVE-------NPDIRYRDS 170

Query: 282 LSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           L++D  + +  +   L+NPPF      D ++  KE            + K     +LF+ 
Sbjct: 171 LAQDYASDEEAYTLVLANPPFAGSL--DYESTSKELLK---------VVKTKKTELLFVA 219

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L+     GGRAA+++    LF   +     E+RR L+E   ++AIV+LP  +F  
Sbjct: 220 LFMRLLKP----GGRAAVIVPDGVLF--GSSKAHKELRRMLVEEQKLDAIVSLPGGVFKP 273

Query: 401 -TNIATYLWILSNRKTEERRGKVQLIN 426
              ++T + + +   +      V   +
Sbjct: 274 YAGVSTAILLFTKTNSG-GTDHVWFYD 299


>gi|121608004|ref|YP_995811.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121552644|gb|ABM56793.1| N-6 DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 485

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 157/477 (32%), Gaps = 67/477 (14%)

Query: 8   AASLANFIWKNAEDLW--GDFKH-----TDFGKVILP-FTLLRRLECALEPTRSAVREKY 59
            ++L + I    + +             +      L     L+  +   E       E  
Sbjct: 1   MSNLTSVIKSIQDIMRQDSGVDGDAQRISQ-----LTWLLFLKVFDALEEE-----LELT 50

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                S I      +         +  +L           L++  A    N +       
Sbjct: 51  RGAYHSPIPEPMRWRHWAADVEGMTGDALLDFVDNQLFVVLKNLSADPLRNPRGYVVRSV 110

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++    +GI+           +++YE +++   S  +  A +F T
Sbjct: 111 FEDAYNCMKSGHLLRQVVNKINGIDF-NRQSERHQFNDLYEKILKDLQSAGN--AGEFYT 167

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIP 237
           PR V      +           +P +   + DP  GTGGFL  A+ H+     +   ++ 
Sbjct: 168 PRAVTQFMVDIC----------NPRLGEVVLDPATGTGGFLVCAIEHLRKQVRNIADEVM 217

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHY 294
                 G E +   H +CV  +L+  +E          I   + L    +D  T  R   
Sbjct: 218 LQSSIRGVEKKHLPHILCVTNLLLHGIEV------PSQIVHDNALMRPLRDYTTADRVDL 271

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             +NPPFG   E D    +                +  + + LFL+ + + L+     GG
Sbjct: 272 VFTNPPFGGMEECDGYPADL---------------RTKETADLFLVLIKHILKP----GG 312

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           RAA+VL    LF   A      I+  LL    +  IV LP  +F   T I T L   +  
Sbjct: 313 RAALVLPDGVLFGEGAK---VRIKEQLLAECNLHTIVRLPHGVFSPYTGIKTNLLFFTKG 369

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR--RQILDIYVSRENGKFSRML 468
                    + +    +    + +  + +  + ++       D + +R   + +  +
Sbjct: 370 TPTTHVWYYEHLYPPGVKNYSKTQPIRIQEFDHEKAWWGNEADGFAARVENEHAWKV 426


>gi|182414826|ref|YP_001819892.1| N-6 DNA methylase [Opitutus terrae PB90-1]
 gi|177842040|gb|ACB76292.1| N-6 DNA methylase [Opitutus terrae PB90-1]
          Length = 563

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/431 (17%), Positives = 147/431 (34%), Gaps = 72/431 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGS 93
           I     L+RL+          +   L        +    K A    Y    +S    L +
Sbjct: 32  ITYLLFLKRLDDL--QKNEENKAARLKLKKLERRIFPAAKDAKGRPYEDCRWSRFQHLEA 89

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-------LLYKICKNFSGIELH 146
                 +  ++  F           D S+    ++ A        LL K+      I + 
Sbjct: 90  KEMFTVVSEHVFPFLRTLGG-----DDSTYAHHMKDARFTIPTPALLAKVVDLIDQIPME 144

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                     ++YE+++ +     +     F TPR ++ L   L           +P   
Sbjct: 145 ----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIQLMVEL----------TAPTAK 188

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGM 259
             + DP CGT GFL  A  ++              +     + HG + +     +    M
Sbjct: 189 DVICDPACGTAGFLVAAGEYLRTRHPEILRDTKLRQHFHHHLFHGFDFDNTMLRIGSMNM 248

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPF--GKKWEKDKDAVEKEH 316
           L+  +E       + +I+   +L++D     ++F   L+NPPF     +E     +++  
Sbjct: 249 LLHGVE-------NPDIRYRDSLAQDHAGEEEKFTLLLANPPFAGSLDYENCAKDLQQ-- 299

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                      + K     +LFL      L+     GGRAA+++    LF   + +    
Sbjct: 300 -----------IVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSNAHRT 342

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +R+ L+E+  ++A+++LP  +F     ++T + + +   +      V             
Sbjct: 343 LRKLLVEDQKLDAVISLPGGVFKPYAGVSTAILLFTKTNSG-GTDHVWFYKVEADGM--- 398

Query: 436 NEGKKRRIIND 446
           +   KR  +  
Sbjct: 399 SLDDKRTELLP 409


>gi|240080598|ref|ZP_04725141.1| hypothetical protein NgonF_04687 [Neisseria gonorrhoeae FA19]
 gi|240118085|ref|ZP_04732147.1| hypothetical protein NgonPID_06446 [Neisseria gonorrhoeae PID1]
 gi|240123639|ref|ZP_04736595.1| hypothetical protein NgonP_06824 [Neisseria gonorrhoeae PID332]
 gi|268596723|ref|ZP_06130890.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19]
 gi|268603800|ref|ZP_06137967.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268682268|ref|ZP_06149130.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
 gi|268550511|gb|EEZ45530.1| N-6 DNA methylase [Neisseria gonorrhoeae FA19]
 gi|268587931|gb|EEZ52607.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268622552|gb|EEZ54952.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
          Length = 533

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/501 (18%), Positives = 192/501 (38%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        I+++     + +K      Y +        + L      +        FS 
Sbjct: 59  ENPDEAIEFINMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E +       RF  G+PKI        
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKDKDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSDIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
            + + +++  + FS ++ Y  
Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469


>gi|19881281|gb|AAM00884.1|AF486557_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 181/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+    ++   L+NPPFG   ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGXEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILRTSEEILNSLEENLKTQQEYLNELKSILK 494


>gi|86152925|ref|ZP_01071130.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|19881263|gb|AAM00869.1|AF486554_5 HsdM [Campylobacter jejuni]
 gi|85843810|gb|EAQ61020.1| type I restriction enzyme EcoEI M protein [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 494

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 182/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+    ++   L+NPPFG K ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILRTSEEILNSLEENLKTQQKYLNELKSILK 494


>gi|327472745|gb|EGF18172.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK408]
          Length = 534

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 179/435 (41%), Gaps = 55/435 (12%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-----TRNNLESYIASF 107
             +                  K    +FY   E +L+ +   N        + ++ I  F
Sbjct: 77  EDIGTATAQLKPEQFIETLHRKQNEDNFYEVFETTLNQIAIDNNDIFSVHTDGDTAIRLF 136

Query: 108 SDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
            +  + I ++   SS   ++ +A   LL ++   F               S ++E++I+ 
Sbjct: 137 DE--RLITDNISDSSKRNQVARAIINLLARV--KFDETIFS---QGFDFFSTLFEYMIKD 189

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +  +      ++ TP  V  +   +L+  D             +YDP+ G+G  L +  +
Sbjct: 190 YNKDGGGKYAEYYTPHSVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLAS 242

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +               + Q++  ++  +         L  +  +    NI QG+T+  +
Sbjct: 243 RI--------GVDKTTVYSQDISQKSSNLLR-----LNLILNGLQHSIHNIVQGNTIIAN 289

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LF 338
               ++  Y +SNPPF   + + +D VE   +  E  RF  G+PK    S   M    LF
Sbjct: 290 RHP-EKMDYIVSNPPFKLDFSEWRDRVETLPEASE--RFFAGVPKVPAKSKDKMAIYELF 346

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H+   L+      G+AA+VL +   F       +  IR+ L++N ++  +V++P+++F
Sbjct: 347 VQHIIYSLKSD----GQAAVVLPTG--FITAQSGIDKAIRQHLVDNQMLAGVVSMPSNIF 400

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T     +  +  +     +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ 
Sbjct: 401 ATTGTNVSILFIDKK----NKGDVVLIDASNLGTKVKEGKNQKTVLSPEEEQKIVETFIK 456

Query: 459 RE-NGKFSRMLDYRT 472
           +E    FS  + Y  
Sbjct: 457 KEVVDDFSVTVSYED 471


>gi|332524592|ref|ZP_08400795.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2]
 gi|332107904|gb|EGJ09128.1| N-6 DNA methylase [Rubrivivax benzoatilyticus JA2]
          Length = 613

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/467 (20%), Positives = 167/467 (35%), Gaps = 74/467 (15%)

Query: 36  LPFT----LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST- 90
           LP       L+ L+  LE       E         I+     +         S   L   
Sbjct: 55  LPLLTWVMFLKFLDD-LEIVHEEEAELDGKRYEPIIEAPYRWRDWAAREDGISGDELLAF 113

Query: 91  LGSTNTRNN-------LESYIA-----SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +G   TR         L +Y+          + + +  +  F     R+    LL  I  
Sbjct: 114 IGQEQTRRADGSAGPGLFAYLRSLGSRGAKGSQREVIANV-FKGVQNRMVSGYLLRDILN 172

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +GI           +S++YE ++R         + +F TPR VV              
Sbjct: 173 KINGIHFSASE-EIHTLSHLYESMLREMRDAAG-DSGEFYTPRPVVRFMVQ--------- 221

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVC 255
               P +  T+ DP CGTGGFL +A +H+A    +    +        GQE +P  + + 
Sbjct: 222 -AMDPQLGETVLDPACGTGGFLVEAFHHMAGQVKNPDQRRTLQRSSLFGQEAKPLPYMLA 280

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
              +L+  LE       +  I  G+TL     ++   +R    L+NPPFG          
Sbjct: 281 QMNLLLHGLE-------APQIAYGNTLERRINEIGHSERVDVILTNPPFG---------- 323

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP---------NGGGRAAIVLSSS 363
             E + G    F P + + ++ ++LFL ++  KL +             GGRAA+V+ + 
Sbjct: 324 -GEEEAGIKNNFPPNM-QTAETALLFLQYIMRKLRVAGAPVAGGKAAARGGRAAVVVPNG 381

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
            LF        + I++ +L+   +  IV LP  +F   T+I   L         +     
Sbjct: 382 TLFGDGIC---AVIKQEMLKEFRLHTIVKLPQGVFAPYTDIPANLLFFERGGPTDTIWYY 438

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +L          R +  K   +  ++       + +RE G  +  +D
Sbjct: 439 ELPLPEG-----RKKYSKTAPLQFEEFTAAQAWWTAREEGPQAWKVD 480


>gi|307268426|ref|ZP_07549804.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|306515233|gb|EFM83770.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 284

 Score =  162 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 112/300 (37%), Gaps = 47/300 (15%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
           A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3   AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65  SNIDLESFVKVAG------------YSFYNTSEYSLSTLGSTNTR-----NNLESYIASF 107
                +  +K                S+    +Y  S+L     +     ++L+      
Sbjct: 63  QTELYKELLKDEDSRQDLVDTLVDTLSYDIEPDYLFSSLAEQAKQNVFQLDDLKKAFVYL 122

Query: 108 SDNAK---AIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           S N K    +F+D D  S        ++   + ++ K  + I++        V+ + YE 
Sbjct: 123 SSNYKQFNGLFDDVDLQSKKLGSDDQQRNVTITEVLKKLNDIDVT--AHEGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI +F SE  + A +F TP  V  +   ++    +         + +++DPT G+G  + 
Sbjct: 181 LISQFASEAGKKAGEFYTPHQVSDMMARIVALGQED------KKLFSVFDPTMGSGSLML 234

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  N++         P  +  HGQEL   T  +    +++  +E++       N++ G T
Sbjct: 235 NVRNYL-------NYPKSVKYHGQELNTTTFNLAKMNLILHGVEAEDM-----NLRNGDT 282


>gi|302520832|ref|ZP_07273174.1| type I restriction enzyme [Streptomyces sp. SPB78]
 gi|302429727|gb|EFL01543.1| type I restriction enzyme [Streptomyces sp. SPB78]
          Length = 506

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 142/424 (33%), Gaps = 60/424 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     ++RL+   +  +            S    +    +   +F       +  + + 
Sbjct: 32  ITYLLFVKRLDEI-QTRKDRKARATGKPDPSPFFTDEQQDLRWQNFKVKDPEIMYGIVAD 90

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                L       S  A               +    LL K+     GI +         
Sbjct: 91  GLFPYLRGMGGDDSTYAH------HMKDARFTIPNPNLLAKVVDLLDGISMDAS----DT 140

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             +IYE+++ +  +        F TPR ++ L   +            PG    + DP C
Sbjct: 141 KGDIYEYMLAKIATSG--QNGQFRTPRHIIDLMVEM----------TRPGPRDVICDPAC 188

Query: 215 GTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           GT GFL  A +++            H       + HG + +     +    ML+  +E  
Sbjct: 189 GTAGFLVQAASYMRRVHREELLEAEHRGHFNDKMFHGFDFDTTMLRIGSMNMLLHGVE-- 246

Query: 268 PRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                + +I+   +L +      +++   L+NPPF    + +  AV+ +           
Sbjct: 247 -----NPDIRYRDSLGESAAGEAEQYSLILANPPFAGSLDYESTAVDLQL---------- 291

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + K     +LFL      +      GGRAA+++    LF   +     E+RR L+E+  
Sbjct: 292 -IAKTKKTELLFLALFLRLM----QTGGRAAVIVPDGVLF--GSTKAHKELRRMLVEDQQ 344

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++A+V LP+ +F     ++T +       +      V   +         +   KR  + 
Sbjct: 345 LQAVVKLPSGVFKPYAGVSTAILFFQKTDSG-GTDHVWFYDVQADGL---SLDDKRNDLL 400

Query: 446 DDQR 449
            + R
Sbjct: 401 PEDR 404


>gi|226951290|ref|ZP_03821754.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244]
 gi|226837963|gb|EEH70346.1| type I restriction enzym, M protein [Acinetobacter sp. ATCC 27244]
          Length = 493

 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/521 (14%), Positives = 163/521 (31%), Gaps = 96/521 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+                                +  +   +  L         
Sbjct: 35  LLFIRRLD--------------EIQITKEKKANRLKTAVEHPIFTPEQDHLRWSK----F 76

Query: 98  NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144
             L      ++  A  +F         D ++    ++ A        LL K+    + + 
Sbjct: 77  ITLGDAATLYNTVANEVFPFIKNLGAEDETTYSHHMKDARFTIPTPALLTKVVDLVADVP 136

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +           +IYE+++ +     +     F TPR ++ +   L+           P 
Sbjct: 137 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHIIKMIVELM----------KPR 180

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETHAVCV 256
              T+ DP CGT GFL  A  ++ D  S          K        G + +     +  
Sbjct: 181 PTDTICDPACGTAGFLVAASEYLNDHYSTEIFANPAAAKRFSEETFFGYDFDSTMLRIGS 240

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             M++  +E       +  I+   +LS+      +++   L+NPPF    + +  A   +
Sbjct: 241 MNMMLHGVE-------NPRIENRDSLSETHSHIAEKYSLILANPPFAGSLDNESCAKNIQ 293

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                       + K         +            GGRAA+++    LF   + +   
Sbjct: 294 A-----------VVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHK 336

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +R+ ++E   +EAI+++P+ +F     ++T + I +   +     KV   +        
Sbjct: 337 ALRQKIVEEQKLEAIISMPSGVFKPYAGVSTAIMIFTKTMSG-GTDKVWFYDMQADGY-- 393

Query: 435 RNEGKKRRIIND-----DQRRQILDIY------VSRENGKFSRMLDYRTFGYRRIKVLRP 483
            +   KR  ++      +    ++  +        R+  + S M+D          +   
Sbjct: 394 -SLDDKRNELDASKHENNNIPDLIARFKNLEGEKDRKATEQSFMVDKADIAANGYDLSIN 452

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                + ++         +   ++        +  LK +++
Sbjct: 453 RYKEVVYEQVEYETPSKILADLEVLEQDILKGMATLKELLK 493


>gi|159897811|ref|YP_001544058.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890850|gb|ABX03930.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 481

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 163/450 (36%), Gaps = 75/450 (16%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+  +        ++P   +   + LA+    I+ E        +F N   +  L  
Sbjct: 33  LLFLKIFDDREQELALIDPHYRSPMPEGLAWHQWAINREGITGEELLNFVNNQLFPQLKN 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L +TN    +   +               F      ++   LL ++    + I+ +    
Sbjct: 93  LAATNQAKAMIQSV---------------FEDAYNYMKNGTLLRQVINKINEIDFNRSA- 136

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              + +++YE L+    +  +  A ++ TPR V      +L           P +  +L 
Sbjct: 137 DRHLFNDVYEKLLSDLQAAGN--AGEYYTPRTVTQFMIEML----------KPRLGESLL 184

Query: 211 DPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP  GTGGFL  A+ ++                   G E +P  H + +  +++  +   
Sbjct: 185 DPAAGTGGFLVSAVEYIRRNDVHTPSDLETLQANIRGIEKKPLPHLLGITNLILHGINL- 243

Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  N+Q  +TL++   +     +     +NPPFG    +++D +E         R 
Sbjct: 244 ------PNLQHANTLARSYSSYGVDDQVDIIATNPPFGG---QEEDGIENNFPELFRTR- 293

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                + +D   LFL+ +   L+      GRAA++L    LF       ++ I+  LL+N
Sbjct: 294 -----ETAD---LFLVLIMRLLKP----NGRAALILPDGTLF---GEGIKTRIKEELLKN 338

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             +  IV LP  +F  + T I T L      +  +             + +      K +
Sbjct: 339 CNLHTIVRLPNGVFNPY-TGIKTNLLFFEKGQPTQEIWYY-----EHPYPAGYKSYSKTK 392

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            I  ++       +++R+  +F+  +D   
Sbjct: 393 PIRLEEFEPERAWWINRQTNQFAWKVDIAD 422


>gi|17230967|ref|NP_487515.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
 gi|17132608|dbj|BAB75174.1| type I restriction modification enzyme M subunit [Nostoc sp. PCC
           7120]
          Length = 480

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/496 (16%), Positives = 176/496 (35%), Gaps = 58/496 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +   E     + + Y +     +   ++   +       +   L         
Sbjct: 33  MIFLKVFDAR-EEEYELLEDNYKSPIPEGLRWRNWAADSEG----ITGDGLLDFVDNALF 87

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +D    +     F      ++   L+ ++    + ++ +         S 
Sbjct: 88  KTLKELRTTATDARGQMIGKV-FEDAYNYMKNGTLIRQVINKLNEVDFNKKDQKK-QFSE 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A ++ TPR V       +           P +   ++DP CGTG
Sbjct: 146 IYEKILKDLQSAGN--AGEYYTPRAVTKFIVDRI----------KPQLGEIVFDPACGTG 193

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A++++        +P        G E +P    +CV  +++  ++         +
Sbjct: 194 GFLTAAIDYIRQHFQSADVPEILQRTIRGTEKKPLPFNLCVTNLILNGIDV-------PS 246

Query: 276 IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +  +TL    +D    +R    ++NPPFG     ++D +E            P   +  
Sbjct: 247 AEHDNTLARPLRDYSPHERVDVIITNPPFGG---MEEDGIEDNF---------PATFRTR 294

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL+ +A+ L+     GGR AIVL    LF        + I+  LL++  +  IV 
Sbjct: 295 ETADLFLVLIAHLLKE----GGRGAIVLPDGTLFGEGVK---TRIKEKLLQDCNLHTIVR 347

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T L   +  +  E             + +      K + I  ++   
Sbjct: 348 LPNGVFNPYTGIKTNLLFFTKGEPTETIWYY-----EHPYPAGYKSYSKTKPIRFEEFAP 402

Query: 452 ILDIYVSRENGKFSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
             + + +RE  +F+  +           + +  P ++            +      +L  
Sbjct: 403 EQEWWDNREENEFAWKVSIADLKANNYNLDIKNPHKVDVEHADLDEMLADHQKLMAELGE 462

Query: 510 LHQSFWLDILKPMMQQ 525
           +      ++++ + + 
Sbjct: 463 VRSKLKFELMEALERD 478


>gi|240016476|ref|ZP_04723016.1| hypothetical protein NgonFA_04779 [Neisseria gonorrhoeae FA6140]
          Length = 533

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336
                     K+F + +SNPPF   +   +D +E +  +    RF  G+P         M
Sbjct: 282 PAHKDASGCLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338

Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
            + + +++  + FS ++ Y  
Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469


>gi|59801126|ref|YP_207838.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090]
 gi|254493837|ref|ZP_05107008.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291]
 gi|59718021|gb|AAW89426.1| hypothetical protein NGO0702 [Neisseria gonorrhoeae FA 1090]
 gi|226512877|gb|EEH62222.1| N-6 DNA methylase [Neisseria gonorrhoeae 1291]
          Length = 533

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336
                     K+F + +SNPPF   +   +D +E +  +    RF  G+P         M
Sbjct: 282 PAHKDASGCLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338

Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
            + + +++  + FS ++ Y  
Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469


>gi|257092509|ref|YP_003166150.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
 gi|257045033|gb|ACV34221.1| N-6 DNA methylase [Candidatus Accumulibacter phosphatis clade IIA
           str. UW-1]
          Length = 516

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 125/332 (37%), Gaps = 53/332 (15%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +  A LL K+      + +           ++YE+++ +     +     F TPR ++ 
Sbjct: 127 TIPSAALLAKVVDLLDAVPME----DRDTKGDVYEYMLGKIA--SAGQNGQFRTPRHIIR 180

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPP 238
           L   L           +P     + DP CGT GFL  A   +     +        +   
Sbjct: 181 LMVEL----------TAPQPSDVICDPACGTAGFLVTAGEVLRQRHPNLLHDAGRREHFH 230

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLS 297
             + HG + +     +    ML+  +E       + +I+   +L++D     +++   L+
Sbjct: 231 HRMFHGFDFDNTMLRIGSMNMLLHGVE-------NPDIRYRDSLAQDHAGEEEKYTLLLA 283

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF    + +  A           R    + K     +LFL      L+     GGRAA
Sbjct: 284 NPPFAGSLDYENTA-----------RDLLQIVKTKKTELLFLALFLRLLKP----GGRAA 328

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
           +++    LF   + +   ++RR L+E+  ++A+V LP  +F     ++T + + +   + 
Sbjct: 329 VIVPDGVLF--GSSTAHKQLRRMLVEDQKLDAVVKLPGGVFKPYAGVSTAILLFTKTNSG 386

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
               +V   +         +   KR  +  + 
Sbjct: 387 -GTDQVWFYDVQADGW---SLDDKRTPLLPED 414



 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 632 GYEINFNRFFYQ-----YQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           GY+++ NR  Y+         R  ++I A+L  +E +I   ++++  
Sbjct: 469 GYDLSLNR--YKEVVHDAVEHRAPKEILADLAKLEEEIQRGMKDLEG 513


>gi|148925705|ref|ZP_01809393.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845715|gb|EDK22806.1| putative type I restriction enzyme M protein [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 494

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 183/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+      +             +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDYEINLKD--LAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+   +++   L+NPPFG K ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILKTSEEILNSLEENLKIQQEYLNELKSILK 494


>gi|329729351|gb|EGG65758.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 277

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 99/288 (34%), Gaps = 43/288 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  L 
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSLLL 239

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                        K   +    GQE    T+ +    ML+  +  +  
Sbjct: 240 RVG----------KETQVYRYFGQERNNTTYNLARMNMLLHDVRYENF 277


>gi|19881269|gb|AAM00874.1|AF486555_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 182/510 (35%), Gaps = 71/510 (13%)

Query: 39  TLLRRLECALEPTRSAVR---EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L+ L+      +       + Y +          +         +    S  +     
Sbjct: 32  LFLKFLDDYETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNASSGSDLLEF 91

Query: 96  TRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
               L  Y+ +F  +D+ K+I       F     R+     L ++      I        
Sbjct: 92  VNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKEDE 150

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              +  +YE L++  GS+    + +F TPR ++     ++           P     +YD
Sbjct: 151 VFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERIYD 199

Query: 212 PTCGTGGFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAGML 260
           P+CG+ GFL ++  H+                  +        G+E  P ++A+ V  M+
Sbjct: 200 PSCGSCGFLVESFLHILYKDRTKSKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMI 259

Query: 261 IRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  +        S NI + +TLSK   D+    ++   L+NPPFG K ++          
Sbjct: 260 LHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF---- 308

Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                      P  S+   +LFL H+   L+      GR AI++    LF     +    
Sbjct: 309 -----------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAFVS 351

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  I 
Sbjct: 352 VKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYELIP 406

Query: 436 NEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
                K + +     ++ L  Y  R+    S ++  +    R        +   + ++  
Sbjct: 407 PYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEEKI 464

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           L   E  +   + +   Q  +L+ LK +++
Sbjct: 465 LRTSEEILNSLEENLKTQQKYLNELKSILK 494


>gi|148262629|ref|YP_001229335.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146396129|gb|ABQ24762.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 541

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 173/481 (35%), Gaps = 85/481 (17%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              +F  +I    L + +          V+E       + I  +   K +   +    E 
Sbjct: 29  DGNEFK-IITQVFLYKFMNDKF---GYEVKEMEPKLKKAAIWEQEIAKYSDKDY----EM 80

Query: 87  SLSTLGST-------------NTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAG 131
            L  +                + R N   +   F D  + I  F +  FS       K  
Sbjct: 81  LLLKMSPDSARLKREHFLPRLHNRQNEGEFAKLFDDTLRDIAIFNNDIFSVKTGTGAKVT 140

Query: 132 LLYKICKNFSGIELHPD------------------TVPDRVMSNIYEHLIRRFGSEVSEG 173
           L  ++    +      D                         S I+E+LI+ +  +    
Sbjct: 141 LFDELSNFITDSSRRDDFCRAIITQLIPFSFEKIFHQKLDFFSTIFEYLIKDYNKDGGGK 200

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  V  +  A+L+D         P    T YDP+ G+G  L +  + + +    
Sbjct: 201 YAEYYTPHAVSKIMAAILVD--------KPVKNVTCYDPSAGSGTLLMNLAHAIGE---- 248

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---- 289
                    + Q++  ++       ML   L  +      +NI QG+T+           
Sbjct: 249 ----DRCTIYSQDISQKS-----TSMLRLNLILNNLVHSIQNIIQGNTMLTPYHKSGDKL 299

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHL 342
             F Y +SNPPF   +   ++ +E +       RF  G+PKI +         +LF+ H+
Sbjct: 300 MTFDYVVSNPPFKLDFSDFRNDLETKQNRD---RFFAGIPKIPNKDKDKMAIYLLFIQHI 356

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L    +  G+AAIV+ +   F       E +IR  L+   ++  +V++P+++F  T 
Sbjct: 357 MFSL----SAKGKAAIVVPTG--FITAQSGIEKKIREKLVVAKMLRGVVSMPSNIFATTG 410

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
               +  L        +G + L++A+ L T+++    ++ +++  +   I+  +   +  
Sbjct: 411 TNVSVLFLDK---TNTKGDIVLMDASKLGTTVKEGKNQKTVLSVAEEELIIKTFNDHKAV 467

Query: 463 K 463
           +
Sbjct: 468 E 468


>gi|240014036|ref|ZP_04720949.1| hypothetical protein NgonD_05208 [Neisseria gonorrhoeae DGI18]
 gi|240121602|ref|ZP_04734564.1| hypothetical protein NgonPI_07528 [Neisseria gonorrhoeae PID24-1]
          Length = 533

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEDVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336
                     K+F + +SNPPF   +   +D +E +  +    RF  G+P         M
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338

Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
            + + +++  + FS ++ Y  
Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469


>gi|114798203|ref|YP_761235.1| type I restriction-modification system, M subunit [Hyphomonas
           neptunium ATCC 15444]
 gi|114738377|gb|ABI76502.1| type I restriction-modification system, M subunit [Hyphomonas
           neptunium ATCC 15444]
          Length = 513

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/428 (16%), Positives = 143/428 (33%), Gaps = 71/428 (16%)

Query: 35  ILPFTLLRRLECA--LEPTRSAVR----EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           I     ++RL+    LE  ++A      E+ +   G +     +  +    F N    ++
Sbjct: 32  ITYLLFIKRLDDLHTLEENKAANLGIKMERRIFPDGKDDQGRDWSDLRWSRFKNFEARAM 91

Query: 89  STLGSTNTRNNLESYIA---SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
             + +      L        S+ ++ +       FS+       A LL K       I +
Sbjct: 92  MDVVAERVFPFLRQMGEEGSSYGEHMRD--ARLGFSN-------AALLAKAVDLLDKIPM 142

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                      ++YE+++ +     +     F TPR ++ L   +            P  
Sbjct: 143 D----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIQLMVEM----------TQPTP 186

Query: 206 IRTLYDPTCGTGGFLTDAMNHVAD-------CGSHHKIPPILVPHGQELEPETHAVCVAG 258
              + DP  GT GFL  A  ++ +                  + HG + +P    +    
Sbjct: 187 QDVICDPAAGTCGFLVAAGEYLREKHASLFRHEKQRTHFHNGMFHGFDFDPTMLRIGSMN 246

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           M++  +E       + ++    +L+++      R+   L+NPPF    + D  A + +  
Sbjct: 247 MVLHGVE-------NPDVSYRDSLAQEHDADAGRYSLILANPPFAGSLDYDTTAKDLQ-- 297

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     + K         +            GGRAA+++    LF   + +    +
Sbjct: 298 ---------QIVKTKKTE----LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSTAHKTL 342

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R  L+E   +EA++ LP+ +F     ++T +   +          V   +         +
Sbjct: 343 REMLVEKHKLEAVLKLPSGVFRPYAGVSTAILFFTKT-GVGGTDHVWFYDLQADGQ---S 398

Query: 437 EGKKRRII 444
              KR  +
Sbjct: 399 LDDKRTEL 406


>gi|331006857|ref|ZP_08330112.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
 gi|330419332|gb|EGG93743.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [gamma proteobacterium IMCC1989]
          Length = 493

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 167/458 (36%), Gaps = 58/458 (12%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            + N   +L++  A    N +       FS     ++   LL ++    + I+    +  
Sbjct: 82  INNNLIPDLKTLTAPIDSNPRGYVVKEAFSDAFNYMKNGTLLRQVVNKLNEIDFT-SSEE 140

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  ++YE +++   S  +  A +F TPR V      ++          +P +  ++ D
Sbjct: 141 RHLFGDLYEQILKDLQSAGN--AGEFYTPRAVTRFIVQMI----------NPQLGESVLD 188

Query: 212 PTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGTGGFL  + + ++D     +           G E +   H +C   M++  +E   
Sbjct: 189 PACGTGGFLACSADLLSDQVGGDTDKYNLFQESLRGVEKKQLPHLLCTTNMMLHGIEV-- 246

Query: 269 RRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                KNI+ G+TLSK L       +    +SNPPFG     ++D +EK        R  
Sbjct: 247 ----PKNIRHGNTLSKQLSSIDEDDQVDVVVSNPPFGG---MEEDGIEKFFPAEMQTR-- 297

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
               + +D   LFL ++   L       GRAA+VL    LF        ++I++ LLE  
Sbjct: 298 ----ETAD---LFLQYIVEILNEK----GRAAVVLPDGTLFGEGVK---TKIKKMLLEEC 343

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG--KVQLINATDLWTSIRNEGKKRR 442
            +  +V LP  +F   T+I T +      K  +     +V L      +        K +
Sbjct: 344 NLHTLVRLPNSVFAPYTSIKTNILFFEKGKPTKEIWYYEVPLPEGVKAF-------NKTK 396

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDY---RTFGYRRIKVLRPLRMSFILDKTGLARLE 499
            +  +      + +   +N K            F   ++ +   +  ++ LD       E
Sbjct: 397 PMKLEDFAACTEWWGEGKNIKAKTKRKNRVENEFA-WKVDIQTIIDRNYNLDIKNPHVGE 455

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
                 +            ++ +  Q+          K
Sbjct: 456 QINHDPEELLADYDKQQQDIQRLRNQLKGILSEALTQK 493


>gi|315637034|ref|ZP_07892257.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
 gi|315478570|gb|EFU69280.1| type I restriction-modification system DNA-methyltransferase
           [Arcobacter butzleri JV22]
          Length = 494

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 109/512 (21%), Positives = 197/512 (38%), Gaps = 82/512 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLE------SFVKVAGYSFYNTSEYSLSTLG 92
             L+ L   LE ++S   E         ID +      + +KV G      S+     L 
Sbjct: 32  LFLKFLAD-LEESKSEDAELDGEIYTYIIDEKYRWQNWAVLKVDGKKDIINSKSGDDLL- 89

Query: 93  STNTRNNLESYIASF---SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHP 147
                  L  Y+  F   ++N K+I       F     R+     L +I      ++ H 
Sbjct: 90  -DFVNKELFPYLKGFKSITENPKSIKYKIGAIFEFLDNRIANGHTLREILDIIDEMDFH- 147

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +      +S IYE L++  GS+    + +F TPR ++ + T ++          +P + +
Sbjct: 148 NQSDLFQLSLIYEKLLKDMGSDGG-NSGEFYTPRPLIKVITDVV----------NPTIGQ 196

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCV 256
           T+YDP  G+ GFL +A NH+      +                    G E  P ++ + V
Sbjct: 197 TIYDPAVGSCGFLIEAYNHIRYADVQNNKQRDLSTDQLKFLNEDTFFGNEKTPLSYVMGV 256

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
             M++  +E       S NI + +TL+KD   L    RF   L+NPPFG K ++      
Sbjct: 257 MNMILHGIE-------SPNIAKSNTLTKDIRGLEEKDRFDCILANPPFGGKEKEQIQQNF 309

Query: 314 KEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                          P  S+   +LFL H+ N L+     GG+  +V+    LF  +  +
Sbjct: 310 ---------------PIKSNATELLFLQHMMNHLK----LGGKCGVVIPEGVLF--QTNN 348

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431
               +++ LLE   +  I++LP+ +F   + + T +              +        +
Sbjct: 349 AFQSVKKDLLERFNVHTILSLPSGVFLPYSAVKTNVVFFDR---VGSTNDIYYYEVNPPY 405

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
                   K + IN D   + LD + SR+  + S +++        I    P +   I  
Sbjct: 406 KLT-----KNKPINIDHFAEFLDSWESRKISENSWIVNVNDIKDFDISAKNPNKNETIEH 460

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           K+ +  +E      KL+    +  +D ++ ++
Sbjct: 461 KSPIELVENI----KLNNAEINDLMDEIETIL 488


>gi|240115789|ref|ZP_04729851.1| hypothetical protein NgonPID1_06019 [Neisseria gonorrhoeae PID18]
 gi|260440393|ref|ZP_05794209.1| hypothetical protein NgonDG_04771 [Neisseria gonorrhoeae DGI2]
 gi|268601467|ref|ZP_06135634.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|291043690|ref|ZP_06569406.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268585598|gb|EEZ50274.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|291012153|gb|EFE04142.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 533

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 90/501 (17%), Positives = 192/501 (38%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAHNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HVIGE--------DKCMIYTQDISQKSSNLLR-----LNLSLNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E +       RF  G+PKI        
Sbjct: 282 PYHKDASDRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKDKDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
            + + +++  + FS ++ Y  
Sbjct: 449 CNTFTNKQAVEDFSVVVGYDE 469


>gi|189467553|ref|ZP_03016338.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM
           17393]
 gi|189435817|gb|EDV04802.1| hypothetical protein BACINT_03943 [Bacteroides intestinalis DSM
           17393]
          Length = 498

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 77/525 (14%), Positives = 178/525 (33%), Gaps = 77/525 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK----VAGYSFYNTSEYSLST 90
           I     ++ L+   +  + A+         +    E   +         ++    +    
Sbjct: 32  ITYLLFMKMLDDK-QREKEAIANLTGDVLLNPTFPEGVWRNPSTDKDVPYHEMRWHVFKE 90

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPD 148
           +  T   + + + +  F  +       +      T+ ++  A LL ++ ++   I     
Sbjct: 91  MEPTKMLDRVRNDVFIFLRHVGKEGSAYRKAMEDTVFQITNARLLSRVIESIENIT---- 146

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +    +M ++YE+++    +        F TPR ++ +   L+           P +  T
Sbjct: 147 SDGADMMGDVYEYMLGIMAASG--TNGQFRTPRHIIRMMVELM----------RPTLNDT 194

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP  G+ GF+ +A   + +  S               + HG + +     +    M++
Sbjct: 195 ICDPAMGSAGFIMEAAKFITEHQSDDLLNIGEGDRFRKEIFHGSDSDASMLRIGCMNMML 254

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             ++         N+   ++LS +     R+  CL+NPPF    + D  A   +      
Sbjct: 255 HDVD-------EPNLYYRNSLSDENNDTNRYTLCLANPPFAGSLDTDDIAHTLKAAV--- 304

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                   K     +LFL  +   L      GGR A ++  + L  G A      IR  L
Sbjct: 305 --------KTKKTELLFLALMMRML----QSGGRCASIVPDTVL-TGDAQ-AYKTIRSAL 350

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           ++   ++A++ +P+ +F   + ++T + I +         KV   +      S+  +   
Sbjct: 351 VDKHCMQAVITMPSGVFQPYSGVSTAIIIFTKT-GTGGTDKVWFYDMRADGFSLTTQRTP 409

Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           +   ND     I+  + + E     SR                    SF +    +    
Sbjct: 410 QPEQND--IPDIISRFHNLEAETDRSRK-----------------EQSFFVTADEIRANG 450

Query: 500 ADITWRKLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSN 543
            D+++++   + +     +  + ++ ++     A        K  
Sbjct: 451 YDLSYKRYHEVEREVIEYEAPETIIARMEERQKAIDAAFAEFKKL 495


>gi|57238568|ref|YP_179699.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni RM1221]
 gi|19881230|gb|AAM00841.1|AF486549_3 HsdM [Campylobacter jejuni]
 gi|57167372|gb|AAW36151.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni RM1221]
 gi|315059002|gb|ADT73331.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Campylobacter jejuni subsp. jejuni S3]
          Length = 494

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 182/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++           S NI + +TL+K   D+   +++   L+NPPFG K ++        
Sbjct: 258 MILH-------EVKSPNIIKTNTLNKKITDITQSEKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILKTSEEILNSLEENLKIQQEYLNELKSILK 494


>gi|187939950|gb|ACD39086.1| type I restriction-modification system methyltransferase subunit
           [Pseudomonas aeruginosa]
          Length = 527

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 137/423 (32%), Gaps = 89/423 (21%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V  +IYE+L+ +  +        F TPR ++     L+          +P     + 
Sbjct: 147 QSDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMIELI----------APQPTEVIC 194

Query: 211 DPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILVPHGQELE 248
           DP CGT GFL   M ++                           + +     +  G + +
Sbjct: 195 DPACGTAGFLARTMEYLNRVHSSPEGTFSDEDGNRHYSGDLLEPYRQHINSQMFWGFDFD 254

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFG 302
                V    M++  +          NI+   +LSK             F   L+NPPF 
Sbjct: 255 TTMLRVSSMNMMLHGVNG-------ANIRYQDSLSKSIKEHYPRQEQNFFDVVLANPPF- 306

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                       E           GL K     +LF+ H+   L+     GGR+A+++  
Sbjct: 307 -------KGSLDETNTNPD---VLGLVKTKKTELLFVAHILRSLK----LGGRSAVIVPD 352

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421
             +F   +     ++R+ LL+N+ +E IV+LP+ +F     ++T + I +   T E   +
Sbjct: 353 GVVF--GSSKAHQQLRQELLDNNQLEGIVSLPSGVFKPYAGVSTAILIFTKGGTTE---R 407

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDI------YVSRENGKFSRMLDYRTFGY 475
           V   +         +   KR  +  +    + D       Y     G  S       FG 
Sbjct: 408 VWFYDLQADGY---SLDDKRTELKGEGCNDLPDAIAQWRKYRQMVEGNISASTINTLFGD 464

Query: 476 RR-----IKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILKPMM 523
           +R     + V   +   + L       +E             K     +   L  L  + 
Sbjct: 465 KRKKAFVVPVEEIVANKYDLSINRYKEVEYQQEQYEEPKVILKRLKGLEQEILADLDELE 524

Query: 524 QQI 526
             +
Sbjct: 525 GML 527


>gi|261401230|ref|ZP_05987355.1| type I restriction enzyme M protein [Neisseria lactamica ATCC
           23970]
 gi|269208818|gb|EEZ75273.1| type I restriction enzyme M protein [Neisseria lactamica ATCC
           23970]
          Length = 533

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 93/564 (16%), Positives = 206/564 (36%), Gaps = 62/564 (10%)

Query: 1   MTE--FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    +L + +         G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQTKALIDSLKTICAHCGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNAELFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D +E E       RF  G+PKI        
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        +  V LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDNVVLIDASGLGKKIKDGKNQKTVLSREEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            + +  ++  + FS ++ Y     +   +         +D   ++  E +      S   
Sbjct: 449 CNTFTHKQAVEDFSVVVGYDEIKAKNYSLSAGQYFEVKIDYVDISAEEFEQKMAGFSADL 508

Query: 512 QSFWLDILKPMMQQIYPYGWAESF 535
              + +  + + ++I        F
Sbjct: 509 DKLFAESAE-LEKEIKDRLAMLKF 531


>gi|327459321|gb|EGF05667.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus sanguinis SK1]
          Length = 534

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 94/542 (17%), Positives = 208/542 (38%), Gaps = 73/542 (13%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREK--YLAFGGSNIDL--ESFVKVAGYSFY 81
           +  ++   +L  + L + L         AV  K  Y      ++D        +   +  
Sbjct: 28  EAGEYK--LLTQSFLYKFLNDKFLYEAKAVDTKNIYEELVKMSLDDYRWLLEDIGTATAQ 85

Query: 82  NTSEYSLSTLGSTNTRNNL----ESYIASFSDNAKAIF--------------EDFDFSST 123
              E  + TL      +N     E+ +   + +   IF              E     + 
Sbjct: 86  LKPEQFIETLHRKQNEDNFYEIFETTLNQIAIDNNDIFSVHTDGDTAIRLFDERLITDNI 145

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
               ++  +   I    + I+             S ++E++I+ +  +      ++ TP 
Sbjct: 146 SDSSKRNQVARAIINLLARIKFDETIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 205

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   +L+  D             +YDP+ G+G  L +  + +              
Sbjct: 206 SVAKIIADILVGNDQ-------PSNVRIYDPSAGSGTLLMNLASRI--------GVDKTT 250

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            + Q++  ++     + +L   L  +  +    NI QG+T+  +    ++  Y +SNPPF
Sbjct: 251 VYSQDISQKS-----SNLLRLNLILNGLQHSIHNIVQGNTIIANRHP-EKMDYIVSNPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSM----LFLMHLANKLELPPNGGG 354
              + + +D VE   +  E  RF  G+PK    S   M    LF+ H+   L+      G
Sbjct: 305 KLDFSEWRDRVETLPEASE--RFFAGVPKVPAKSKDKMAIYELFVQHIIYSLKSD----G 358

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           +AA+VL +   F       +  IR+ L++N ++  +V++P+++F  T     +  +  + 
Sbjct: 359 QAAVVLPTG--FITAQSGIDKTIRQHLVDNQMLAGVVSMPSNIFATTGTNVSILFIDKK- 415

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTF 473
               +G V LI+A++L T ++    ++ +++ ++ ++I++ ++ ++    FS  + Y   
Sbjct: 416 ---NKGDVVLIDASNLGTKVKEGKNQKTVLSSEEEQKIVETFIKKKAVDDFSVTVSYEDI 472

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITW----RKLSPLHQSFWLDILKPMMQQIYPY 529
             +   +         +D   +   E +        KLS L Q     + + + +Q+   
Sbjct: 473 KEKNYSLSAGQYFDIKIDYVDITAEEFEAKMTAFQDKLSDLFQQSH-ALEQEIEEQMKGL 531

Query: 530 GW 531
            +
Sbjct: 532 KY 533


>gi|297587005|ref|ZP_06945650.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
 gi|297574986|gb|EFH93705.1| site-specific DNA-methyltransferase (adenine-specific) [Finegoldia
           magna ATCC 53516]
          Length = 489

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 140/366 (38%), Gaps = 49/366 (13%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F      ++   LL ++      I+   D        +IYE +++    + +  + +F T
Sbjct: 114 FEDANNYMKDGVLLRQVINVIDEIDFS-DYEESHAFGDIYESILKEL--QSAGSSGEFYT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKIP 237
           PR V  L   ++           P +   + D  CGTGGFLT  +  +         +  
Sbjct: 171 PRAVTDLMAIMI----------KPKIGEKMADFACGTGGFLTSWLKELKKQVKTVADEEA 220

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294
                +G E +   + +C+  MLI  L+         NI   ++L KD        +F  
Sbjct: 221 YSNSIYGIEKKQFPYMLCITNMLIHDLDV-------PNIYHDNSLLKDILDYTDEDKFDV 273

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPP+G   ++D      +                S+ + LF+  +  +L+      G
Sbjct: 274 ILMNPPYGGSEKEDVKNHFPQDLA------------SSETADLFMSVIMYRLKE----NG 317

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           RAA++L    LF   + + +  I++ L+    +  I+ +P  +F   T+I T +    N 
Sbjct: 318 RAAVILPDGFLF--GSDNAKINIKKNLINKFNLHTIIRMPNSVFAPYTSITTNILFFDNT 375

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +     ++    D+    +N   K + +  +   +++D + +RE  +       + F
Sbjct: 376 GKTKETWYYRM----DMPEGYKNF-SKTKPMKLEHFDKVVDWWNNREEIEIDGFYKSKKF 430

Query: 474 GYRRIK 479
             + I 
Sbjct: 431 TAQEIV 436


>gi|210610695|ref|ZP_03288576.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787]
 gi|210152328|gb|EEA83334.1| hypothetical protein CLONEX_00766 [Clostridium nexile DSM 1787]
          Length = 545

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/539 (14%), Positives = 193/539 (35%), Gaps = 86/539 (15%)

Query: 28  HTDFGKVILPFTLL-RRLECAL--------EPTRSAVREKYLAFGGSNIDLESFV----- 73
            +++   I+    L + L            E  + +   +      S  D E  +     
Sbjct: 30  SSEYK--IITEIFLYKFLNDKFLYEVQQAEESLKDSDNVEQALNDMSEDDYEMLMMLLPP 87

Query: 74  ---KVAGYSF----YNTSEYS-LSTLGSTNTRNNLESYIASFS------DNAKAIFEDFD 119
              K+    F    +N       + L  +   +   + +  FS      D  + +F++  
Sbjct: 88  ATAKLKKEHFISCLFNHKNDDKFNELFDSTLWDISNTNLDVFSVSTGSGDKIR-LFDEHL 146

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFM 178
             +      ++     +                    + I+E+LI+ +  +  +   ++ 
Sbjct: 147 SQNVTESNRRSDFCKAMIDKLVTFSFADAFSQKYDFFATIFEYLIKDYNKDFGK-YAEYY 205

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   +++               T+YDP  G+G  +    + + +         
Sbjct: 206 TPHSIASIIARIMVPEG--------TQNVTVYDPAAGSGTLVLALAHEIGESN------- 250

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RF 292
               + Q++  +++           L  +       ++  G TL       +      +F
Sbjct: 251 -CTIYTQDISQKSNEFLR-----LNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGLMKF 304

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANK 345
            Y +SNPPF   +  ++D +     +    RF  G+P I +          +FL H+   
Sbjct: 305 DYIVSNPPFNVDFSDNRDTL---AGDIYKERFWAGVPNIPNKKKDSMAIYQMFLQHIIFS 361

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++     G +AA+V+ +  L  G       +IR  +++  ++  +V++P+++F  T    
Sbjct: 362 MK---ENGCKAAVVVPTGFLTAG--TGIPKKIRERIVKERMLRGVVSMPSNIFATTGTNV 416

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQILDIYVSRE-NGK 463
            +  L N K  E+     L++A+ L T ++ +GK +R +++ ++   I+  + + E    
Sbjct: 417 SVVFLDNTKKYEQA---ILMDASKLGTKVKIDGKNQRTVLSPEEIEDIIHTFNNFESKDD 473

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLHQSFWLDILKP 521
           FS ++D     Y +I+  +    +    +  +  +E     ++     +     ++   
Sbjct: 474 FSVVVD-----YEKIEQKKCSFSAGQYFEVKIEYVELTQEEFKAKMDEYTEKLTELFAE 527


>gi|19881275|gb|AAM00879.1|AF486556_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 181/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F   D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNDDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+    ++   L+NPPFG K ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 MSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILRTSEEILNSLEENLKIQQEYLNELKSILK 494


>gi|189424479|ref|YP_001951656.1| N-6 DNA methylase [Geobacter lovleyi SZ]
 gi|189420738|gb|ACD95136.1| N-6 DNA methylase [Geobacter lovleyi SZ]
          Length = 477

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 85/441 (19%), Positives = 159/441 (36%), Gaps = 61/441 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ L+      +    E       S I      +         +   L         
Sbjct: 34  MITLKILDD-----KDKELEILQEAYASPIPSAVQWRAWAADAEGMTGDELKEFIDLKLF 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++ +   + N +A+     F  T   ++   ++ ++    + I+    +    +  +
Sbjct: 89  PALKN-LDISTGNKRALIIREIFEGTNNYMKNGTVIRQVLNELNQIDF-NSSDDRHIFGD 146

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE ++R   S  +    +F TPR +    TA++          +P +   + DP CGTG
Sbjct: 147 IYETILRDLQSAGN--YGEFYTPRALTEFMTAII----------NPRLGEKVLDPACGTG 194

Query: 218 GFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GFLT A+ ++                  HG E +P    + V  M++  +E         
Sbjct: 195 GFLTCAIENIRRQDVKNVEDLQTLQSTIHGMEFKPLPFMLSVTNMILHDIEV-------P 247

Query: 275 NIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           N+    +L+++        R    L+NPPFG       D VE                + 
Sbjct: 248 NVDYTDSLNREYTSIGAKDRVDVILANPPFGASVT---DGVETNFPLNY---------RT 295

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           ++ + LFL+ +   L+     GGRAAIVL    L  G     +  IR+  LE   +  IV
Sbjct: 296 TESADLFLLLMIRYLKD----GGRAAIVLPDGSL-TGD--GVKQRIRQHWLEGCNLHTIV 348

Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            LP  +F    ++AT L   +  +  +     + QL      +        K + I   +
Sbjct: 349 RLPNSVFQPYASVATNLLFFTKGEPTKEIWYWEHQLPEGVKSY-------SKTKPIQSAE 401

Query: 449 RRQILDIYVSRENGKFSRMLD 469
             ++ + + +R+    +  + 
Sbjct: 402 FNRLKEWWNNRQESDQAWRVS 422


>gi|19881250|gb|AAM00858.1|AF486552_4 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  160 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 182/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++           S NI + +TL+K   D+   +++   L+NPPFG K ++        
Sbjct: 258 MILH-------EVKSPNIIKTNTLNKKITDITQSEKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILRTSEEILNSLEENLKIQQEYLNELKSILK 494


>gi|19881226|gb|AAM00838.1|AF486548_5 HsdM [Campylobacter jejuni]
          Length = 494

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 181/512 (35%), Gaps = 75/512 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILEEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L +       I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREAINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKTMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+    ++   L+NPPFG K ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEKDKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILKSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +    +  
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGVYYYEL 404

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           I      K + +     ++ L  Y  R+    S ++  +    R        +   + ++
Sbjct: 405 IPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNPNVKEE 462

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
             L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 KILRTSEEILNSLEENLKTQQEYLNELKSILK 494


>gi|317505570|ref|ZP_07963481.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella salivae DSM 15606]
 gi|315663318|gb|EFV03074.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella salivae DSM 15606]
          Length = 505

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 89/443 (20%), Positives = 162/443 (36%), Gaps = 65/443 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +    E T      K      S I  E   +       + S  +   L      
Sbjct: 33  MFFLK-VYDTQEETWEYKAAKEKKEFKSIIPEELRWRNWAIDEKDGSALT-GDLLLNFIN 90

Query: 98  NNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L   + + +            K +FED +       ++   LL ++    + IE   D
Sbjct: 91  DKLFPTLKNLAVTHETPRSKSIVKEVFEDLN-----QYMKNGILLRQVINIINEIEF-DD 144

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                +  +IYE +++   S  +  A +F TPR +       L          +P +  T
Sbjct: 145 ADDRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------NPKLGET 192

Query: 209 LYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + D T GTGGFLT A+N++       +          GQE +P  + + +  +L+  +E 
Sbjct: 193 VGDFTSGTGGFLTSALNYLNKQIKTTNDGRLFQNAAVGQEWKPLPYLLSITNLLLHDVE- 251

Query: 267 DPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                 S NI+   +LS    D     +      NPP+G   +    +            
Sbjct: 252 ------SPNIRHCDSLSTKMSDFKESDKVDVIAMNPPYGGSTDASVKSNFPMAF------ 299

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 + S+ + LF++ +  +L+      GRAA+++    LF   A   +  I+  LL+
Sbjct: 300 ------RSSETADLFMVLIMYRLKKD----GRAAVIVPDGFLF--GADGAKLAIKSELLK 347

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG---- 438
              +  I+ LP  +F   T+IAT +   +N K  +   +         +     EG    
Sbjct: 348 KFNLHTIIRLPGSIFAPYTSIATNILFFNNEK-ADGAEEGLSTKDIWFYRMDMPEGYKHF 406

Query: 439 KKRRIINDDQRRQILDIYVSREN 461
            K R +  +  + I+D +  R+ 
Sbjct: 407 SKTRSMKLEHCQPIIDWWNDRKE 429


>gi|255527615|ref|ZP_05394477.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296187658|ref|ZP_06856052.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
 gi|255508687|gb|EET85065.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296047615|gb|EFG87055.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
          Length = 498

 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 159/455 (34%), Gaps = 89/455 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+   + T      +      S    E                +   L      
Sbjct: 35  LLFIKRLDDI-DNTNEKRANRIGKAFTSVFPEELMKWS-----------NFKHLDVNEMF 82

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVPDR 153
           + +   +  F        E+  F++ +      + K  LL +  +   GI +        
Sbjct: 83  DIVAQKVFPFIKTMGG--ENSSFTTEMKDAVFMIPKPSLLQESVRIIDGINME----DAD 136

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE+L+ +    VS     F TPR ++ +   L+          +P     + DP 
Sbjct: 137 TKGDLYEYLLSKLA--VSGVNGQFRTPRHIIRMMVELM----------NPCAEDKICDPA 184

Query: 214 CGTGGFLTDAMNHVADCG------------------------SHHKIPPILVPHGQELEP 249
           CGT GFL  ++ ++ +                             +     + +G + +P
Sbjct: 185 CGTAGFLVSSLEYILEKYTKPESIFTDEEGVVHNKIGDMMSSEEWEHFRTSMFYGFDFDP 244

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
               +    +++  ++       + N+ Q  TLSK      ++   L+NPPF        
Sbjct: 245 SMVRIASMNLMLHSID-------NPNMVQNDTLSKRYEEENKYTLVLANPPFKGSI---- 293

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                    G++ +        +   +LF+  +   L    + GGR A+++    LF   
Sbjct: 294 -------DKGDISKSLAAGASTTKTELLFMKLINRIL----DLGGRCAVIVPDGVLF--G 340

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428
           +     +IR+ L+EN+ +E ++++P+ +F     ++T + + +     E   KV   + T
Sbjct: 341 STKAHKDIRKNLIENNALEGVISMPSGVFKPYAGVSTAVLMFTKGGETE---KVWFYDMT 397

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                  +   KR  I+D     I++ +   +  K
Sbjct: 398 ADG---FSLDDKRNPIDDSDIPNIIESWKKVKKDK 429


>gi|258546308|ref|ZP_05706542.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC
           15826]
 gi|258518452|gb|EEV87311.1| type I restriction enzyme M protein [Cardiobacterium hominis ATCC
           15826]
          Length = 536

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 97/566 (17%), Positives = 205/566 (36%), Gaps = 66/566 (11%)

Query: 1   MTE--FTGSAASLANFIWKNA-EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    +L + +         G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQTKALIDSLKTICVNYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           K        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  KKPDELIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118

Query: 110 NAKA-----IFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             +      +FE      +    R +    L      FS   +            I+E+L
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEVIFAQKFDFFA--TIFEYL 176

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I+ + S       ++ TP  V  +   +L+                +YDP+ G+G  L +
Sbjct: 177 IKDYNSNSGGKYAEYYTPHAVARIMADILVPE----AVRGQIRSVDVYDPSAGSGTLLMN 232

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + + +           + + Q++  ++  +         L  +       N+ QG+T+
Sbjct: 233 VAHAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTI 279

Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-- 335
                       K+F + +SNPPF   +   +D +E E       RF  G+PKI      
Sbjct: 280 LSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTD 336

Query: 336 -----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                 LF+ H+   L+      G+AAIVL +   F       + +IR  L+EN ++  +
Sbjct: 337 KMEIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREHLVENKMLAGV 390

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           V++P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++  + +
Sbjct: 391 VSMPSNIFATTGTNVSILFIDK----ANKNKVVLIDASGLGEKIKDGKNQKTVLSRAEEQ 446

Query: 451 QILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I + +  ++  + FS ++ Y     +   +         +D   ++  E      + S 
Sbjct: 447 KICNTFTHKQVVEDFSVVVSYDEIKAKNYSLSAGQYFEVKIDYVDISADEFAQKMAEFSA 506

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESF 535
                + +  + + ++I        F
Sbjct: 507 DLDKLFTESAE-LEREIKDKLQRLQF 531


>gi|261867041|ref|YP_003254963.1| hypothetical protein D11S_0333 [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412373|gb|ACX81744.1| hypothetical protein D11S_0333 [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 534

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 85/501 (16%), Positives = 185/501 (36%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    +L + +         G+    +F  +I    L + L    +     + E
Sbjct: 1   MTELYFTEQTKTLIDSLKTICAHYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKILE 58

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-- 115
           +        +D+E   K A     ++  Y        +     +  +   + +   +F  
Sbjct: 59  EKPGEPMEFVDMEIQSKTAVLKPEHSIRYLSQRQNDADFAKLFDDTLIDIAAHNAEVFAV 118

Query: 116 ------EDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
                 +   F      +            +    +               + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYIADENRRDDFCRALISKLADFSFEAVFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  D      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPQDVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLVLNNLVHSLNNVIQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                     K+F + +SNPPF   +   +D ++         RF  G+PKI        
Sbjct: 282 PYHKDKVGRLKKFDFIVSNPPFKLDFSDFRDQLDSAENRE---RFFAGIPKIKAKDKDKM 338

Query: 336 ---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+A+IVL +   F       + +IR +L+EN +   +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKASIVLPTG--FITAQSGIDRKIREYLVENKMFAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + +V LI+A+ L   I++   ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----ANKDQVVLIDASGLGEKIKDGKNQKTVLSREEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
              +  ++  + FS ++ Y  
Sbjct: 449 CQTFTDKQVVENFSVVVGYDE 469


>gi|217975327|ref|YP_002360078.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217500462|gb|ACK48655.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 540

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 145/422 (34%), Gaps = 73/422 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+  L+ T     +       + I       +    F +     +  +      
Sbjct: 35  LLFIRRLDE-LQRTAERRAQATGIPVANPIFGPDEQALRWSHFKDKDPDVMMDIVQNQVF 93

Query: 98  NNLESYIA--SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
             +++     SF+++ K       F     +L     L ++ +  S I +          
Sbjct: 94  PKIKNLHDEGSFAEHMKDAI----FMIPSPKL-----LDQVVQLLSAINMD----DKDTK 140

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+ +           F TPR+++ +   L+           P +  T+ DP  G
Sbjct: 141 GDLYEYLLSKLQQSG--VNGQFRTPRNIIQMMVELM----------QPKLGDTICDPASG 188

Query: 216 TGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           T GFL  A+ +V +          + +     +  G + +     +    ML+  +E   
Sbjct: 189 TCGFLMAALEYVENRYKQEVNKPANRQHFNNAMFTGFDFDKSMLRIGAMNMLLHGIE--- 245

Query: 269 RRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               +  +    +L    D    + +   L+NPPF    + D  A +     G+      
Sbjct: 246 ----NPTVLYRDSLQDQGDANIREAYSLILANPPFKGSVDFDIIAPDLLRALGKNPTAKK 301

Query: 327 GLP---------------------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             P                           +LFL  +   L++    GGRAA+++    L
Sbjct: 302 VAPKYKTEIDADGVETQVEVKAKGPTEKSELLFLALILRMLKV----GGRAAVIVPDGVL 357

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
           F   +      IR  L+    +EA+++LP+ +F     ++T + I +   +     KV  
Sbjct: 358 F--GSTKSHKSIREKLINEQKLEAVISLPSGVFKPYAGVSTAILIFTKTNSG-GTDKVWF 414

Query: 425 IN 426
            +
Sbjct: 415 YD 416


>gi|288573654|ref|ZP_06392011.1| type I restriction-modification system, M subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569395|gb|EFC90952.1| type I restriction-modification system, M subunit
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 248

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 21/232 (9%)

Query: 1   MTEFTGSAA-------SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           M+    +         +L+  +W+ A  L G     DF   I P    +RL    +   +
Sbjct: 1   MSSKNENNNSVDLDIGTLSGHLWETANILRGPVDAADFKTYIFPLLFFKRLSDVYDEEYT 60

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFS 108
              E+      S+ D+E       + F          +   S N  + L+     I   +
Sbjct: 61  VALEE------SDGDVEFAQFPENHRFQVPEGCHWKDVRAKSANIGHALQKAMRCIEQAN 114

Query: 109 DN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            +    IF D  +++   RL  A LL  + ++FS + L  +     ++   YE+LI++F 
Sbjct: 115 PDTLHGIFGDAQWTNK-DRLSDA-LLKDLIEHFSSLNLGNEHCKADILGQAYEYLIKKFA 172

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
              ++ A +F TPR VV L   +L          +P         T    G 
Sbjct: 173 DLTNKKAGEFYTPRSVVALMVRILAPKAGETIPAAPRTSCCRNTWTTSIAGT 224


>gi|295837452|ref|ZP_06824385.1| type I restriction-modification system, M subunit [Streptomyces sp.
           SPB74]
 gi|197699692|gb|EDY46625.1| type I restriction-modification system, M subunit [Streptomyces sp.
           SPB74]
          Length = 507

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 77/430 (17%), Positives = 140/430 (32%), Gaps = 72/430 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY------SFYNTSEYSL 88
           I     ++RL+     TR     K      +     S    AG       +F       +
Sbjct: 32  ITYLLFVKRLDEI--QTR-----KDRKARATGTPDPSPFFTAGQQDLRWQNFKVKDPEIM 84

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + +      L       S  A               +   GLL K+     GI +   
Sbjct: 85  YGIVADGLFPYLRRMGGDASTYAH------HMKDARFTIPGPGLLAKVVDLLDGISMDAS 138

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   +IYE+++ +  +        F TPR ++ L   +            PG    
Sbjct: 139 ----DTKGDIYEYMLAKIATSG--QNGQFRTPRHIIDLMVEM----------TRPGPRDV 182

Query: 209 LYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP CGT GFL  A +++            H       + HG + +     +    ML+
Sbjct: 183 ICDPACGTAGFLVQAASYLRRVHREDLLEAEHRGHFNEKMFHGFDFDTTMLRIGSMNMLL 242

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             +E       + +I+   +L +      +R+   L+NPPF    + D  A + +     
Sbjct: 243 HGVE-------NPDIRYRDSLGESAAGEAERYSLILANPPFAGSLDHDSTAADLQR---- 291

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                  + +         +            GGRAA+++    LF   A     E+RR 
Sbjct: 292 -------IARTKKTE----LLFLALFLRLLKSGGRAAVIVPDGVLF--GATKAHRELRRV 338

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L+E+  ++A+V LP+ +F     ++T + +     +      V   +         +   
Sbjct: 339 LVEDQQLQAVVKLPSGVFKPYAGVSTAILLFQRTDSG-GTDHVWFYDVRADGL---SLDD 394

Query: 440 KRRIINDDQR 449
           KR  +    R
Sbjct: 395 KRNDLLPADR 404


>gi|282883061|ref|ZP_06291662.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281297118|gb|EFA89613.1| type I restriction enzyme EcoprrI M protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 280

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 127/292 (43%), Gaps = 33/292 (11%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300
             GQE+      +C   M +  +  +     + +I++G TL   L   ++ F   +SNPP
Sbjct: 14  FFGQEINMTNFNLCRMNMFLHNVNYN-----NFSIKRGDTLLAPLHNDEKPFDAIVSNPP 68

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           +  KW  D D            RF P   L   +     F++H  + L       GRAAI
Sbjct: 69  YSIKWVGDNDPT-----LINDIRFAPAGKLAPKNYADFAFILHALSYLSSK----GRAAI 119

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V      +   A   E  IR++L++N  ++A++ LP +LFF T+IAT + +++  KTE  
Sbjct: 120 VCFPGIFYRKGA---EKTIRKYLVDNSFVDAVIQLPENLFFGTSIATCVLVMAKNKTE-- 174

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF-SRMLDYRTFGYRR 477
             KV  I+A++ +  + N      I+ ++   +I+D +  R+  ++ SR +         
Sbjct: 175 -NKVLFIDASNEFKKVTN----NNILEEENINKIVDEFRDRKEIEYFSRYVSRDEIAEND 229

Query: 478 IKVLRPLRMSFILDKTGLA----RLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             +     +     +  +       E + T  K++ L ++    I++ +  +
Sbjct: 230 YNLSVSTYVEKEDTREKIDIKVLNKEIEETVEKINKL-RASINQIVRELEDE 280


>gi|194364814|ref|YP_002027424.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3]
 gi|194347618|gb|ACF50741.1| N-6 DNA methylase [Stenotrophomonas maltophilia R551-3]
          Length = 527

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 90/533 (16%), Positives = 173/533 (32%), Gaps = 102/533 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLG 92
               R L+      +  V E+     G  ++        G      +F N S   L    
Sbjct: 35  LMFARMLD-----MQEDVVERKAKRTGKPVERLFPASREGQLLRWKNFRNLSGKELHK-- 87

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK---ICKNFSGIELHPDT 149
             + + N+  +  S S                  ++ A L  K   +      +      
Sbjct: 88  --HLKKNVYPFFTSLSTAGDKGGSGAALGHIGEYMQDADLEIKNESVLVAAVEMVNELPL 145

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               V  +IYE+L+ +  +        F TPR ++     ++          +P     +
Sbjct: 146 TQTDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMVEVV----------APQPYEVV 193

Query: 210 YDPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILVPHGQEL 247
            DP+CGT GFL   M ++                          ++ K     +  G + 
Sbjct: 194 CDPSCGTAGFLARTMEYLNRTHSSEAGTLTDEDGNSSYTGDLLDAYRKHINSQMFWGFDF 253

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPF 301
           +     V    ML+  +          NI    TL+K             F   L+NPPF
Sbjct: 254 DTTMLRVSSMNMLLHGV-------SGANINYQDTLNKSIKEHFPRQEENFFDVVLANPPF 306

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                        E            L       +LF+ H+   L+     GGRAA+++ 
Sbjct: 307 --------KGSLDEANVNPD---VLALVATKKTELLFVAHILRSLK----LGGRAAVIVP 351

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
              LF   +     ++RR LLEN+ +E +++LP+ +F     ++T + + +     E   
Sbjct: 352 DGVLF--GSSKAHQQLRRELLENNQLEGVISLPSGVFRPYAGVSTAILLFTKGGQTE--- 406

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILD------IYVSRENGKFSRMLDYRTFG 474
           +V   +         +   KR  +  +    + D       Y         +    + FG
Sbjct: 407 RVWFYDLRADGY---SLDDKRTPLKGEGSNDLPDAIAQWAAYRKLVERNARKQTINKQFG 463

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-LHQSFWLDILKPMMQQI 526
            R+       + +F++    +A  + D++  +     HQ    +  + ++Q++
Sbjct: 464 DRK-------QKAFVVPAEAIAANKYDLSINRYKEVEHQQVQYEDPRQILQRL 509


>gi|148544649|ref|YP_001272019.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|184154002|ref|YP_001842343.1| type I restriction-modification system M subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227363771|ref|ZP_03847878.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|325682982|ref|ZP_08162498.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
 gi|148531683|gb|ABQ83682.1| N-6 DNA methylase [Lactobacillus reuteri DSM 20016]
 gi|183225346|dbj|BAG25863.1| type I restriction-modification system M subunit [Lactobacillus
           reuteri JCM 1112]
 gi|227071128|gb|EEI09444.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM2-3]
 gi|324977332|gb|EGC14283.1| type I site-specific deoxyribonuclease [Lactobacillus reuteri
           MM4-1A]
          Length = 517

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 140/388 (36%), Gaps = 55/388 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V  ++YE+L+ +  +        F TPR ++ +   L+          +P +   + DP
Sbjct: 170 DVRGDVYEYLLGKLSTAG--RNGQFRTPRHIIKMIVELM----------NPQVTDKICDP 217

Query: 213 TCGTGGFLTDAMNHVADCGSHH---KIPPILVPH-----GQELEPETHAVCVAGMLIRRL 264
             GT GFL ++   + D                H     G + +     +    ML   +
Sbjct: 218 AAGTAGFLVESAEFLQDKKKEEIFYNKENRHYFHNEMFTGYDTDQTMLRIGAMNMLSHGV 277

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           +       + N++   +LS+       +   ++NPPF  K   D ++V K+         
Sbjct: 278 D-------NPNVEYQDSLSEQNTDRDEYSLIMANPPF--KGSLDYNSVSKDLLK------ 322

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              + K     +LF+      L++    GGR A ++    LF   +      IR+ ++EN
Sbjct: 323 ---ICKTKKTELLFVTLFLQMLKV----GGRCACIVPDGVLF--GSSKAHKSIRKEIIEN 373

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + +EA++++P+ +F     ++T + I +         KV   + T       +   KR  
Sbjct: 374 NNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYDMTADG---FSLDDKRTP 429

Query: 444 INDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
           + ++    I++ +        R+    S M+D +        +                 
Sbjct: 430 VKENDIPDIIERFNHLDKEVDRKKTNKSFMVDKKDIVDNDYDLSINRYKEIEYKPVKYPP 489

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ 525
            E  I   +      +  L  LK +++ 
Sbjct: 490 TEEIIAEIEKLDKEANDALQELKALLKD 517


>gi|238809498|dbj|BAH69288.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 503

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 163/442 (36%), Gaps = 63/442 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96
              L+ +  A E     + + Y +   + +   +      +S    +   L  L +    
Sbjct: 36  MFFLK-VYDAKEREWEFIDKDYKSLIPNELKWST-WATDDHSNNVITGEKLLDLVNNKLF 93

Query: 97  ---------RNNLESYIASFSDN--AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
                     +N E      +++   K     F F      ++   LL ++    + ++ 
Sbjct: 94  PFLKGETVTLSNGEQAFYGINEHTILKQKIARFVFEDAQNYMKDGVLLRQVINVINELDF 153

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D         IYE +++    + +  A +F TPR V      ++          +P +
Sbjct: 154 A-DYKEKHEFGTIYETILK--SLQSAGNAGEFYTPRAVTDFMVKMI----------NPKL 200

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
              + D  CGTGGFLT ++ H+ D       +       +G E +P  + +C+  MLI  
Sbjct: 201 GEKIADFACGTGGFLTSSLKHLEDQKKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHD 260

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++          I   ++L K   D     +F   L NPP+G   ++             
Sbjct: 261 VD-------EPKIFHDNSLEKRVQDYTEADKFDIILMNPPYGGSEKEAVK---------- 303

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
              F   L + S+ + LF+  +  +L+      GR A++L    LF   A + +  I+  
Sbjct: 304 -NNFPADL-RSSETADLFMNVIMYRLKKK----GRCAVILPDGFLF--GADNAKVAIKTK 355

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LL+   +  I+ +P  +F   T+I T +    +    E     ++    D+    +N   
Sbjct: 356 LLKEFNLHTIIRMPHSVFAPYTSITTNILFFDHTHPTEEVWFYRM----DMPEGYKNF-S 410

Query: 440 KRRIINDDQRRQILDIYVSREN 461
           K + I  +   Q++  + +RE 
Sbjct: 411 KTKPIQLEHFDQVIKWWDNREE 432


>gi|91217329|ref|ZP_01254289.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
 gi|91184437|gb|EAS70820.1| type I restriction-modification system, M subunit [Psychroflexus
           torquis ATCC 700755]
          Length = 479

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 174/495 (35%), Gaps = 64/495 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++      E       + Y +    N+  +++           +  +L     T+  
Sbjct: 34  MLFMKIFADK-EEEWEITIDNYESPIPENLKWQNWAADDEG----LTGDALMDFIETDLF 88

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++   + S  A+ I     F  T   ++   L  ++    + I+ +  T    + ++
Sbjct: 89  PALKNLDITISPQAR-IIRAV-FDDTYNYMKNGTLFRQVINVINEIDFNNST-DSHLFND 145

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE +++    + +  + ++ TPR V      ++          +P +  ++ DP CGTG
Sbjct: 146 LYETILKEL--QSAGSSGEYYTPRAVTQFMVDMV----------NPQLGESVLDPACGTG 193

Query: 218 GFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  ++HV         +        G E +P  H +C   +++   +          
Sbjct: 194 GFLTCTIDHVRAQVKDATDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDL-------PV 246

Query: 276 IQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +++ + LSK   D  T  +    LSNPPFG              ++G    F     +  
Sbjct: 247 VRRDNLLSKPYADWGTKDKLDIILSNPPFGGVE-----------EDGTETNFPAKF-RTK 294

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LFL  +   L+      GR AIVL    LF        + ++  LL+   +  IV 
Sbjct: 295 ETADLFLALIIKLLKNK----GRCAIVLPDGTLFGEGMK---TRLKEELLDKCNLHTIVR 347

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T L         +             +        K + I+  +   
Sbjct: 348 LPNGVFNPYTGIKTNLLFFEKGTPTKEVWYY-----EHPYPKGAVSYNKTKPIHIKEFDV 402

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
               + +RE+ KFS+          ++ +    +  + LD     +    +   ++    
Sbjct: 403 EKAWWNNREDEKFSKNA-------WKVSIEEIKKRGYNLDIKNPHQEVDTLASPEVLLEK 455

Query: 512 QSFWLDILKPMMQQI 526
            +     +  +  +I
Sbjct: 456 YTATEQKISTIQDKI 470


>gi|327191125|gb|EGE58171.1| N-6 DNA methylase [Rhizobium etli CNPAF512]
          Length = 484

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 152/458 (33%), Gaps = 81/458 (17%)

Query: 38  FTLLRRLEC---ALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+ ++     LE TR        +   +     D E     A  +F N   +    L
Sbjct: 33  MFFLKIMDDQDQELELTRDDYVSPIPEKFQWRSWAADPEGITGEALLTFVNIELF--PAL 90

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            +                  + +FE          ++   L+ ++    S ++       
Sbjct: 91  KALPVSAQPGDR----RRVVRDLFE-----DAYNYMKSGQLIRQVVNKISDVDF-NSLTE 140

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            +    IYE ++    S  +  A ++ TPR +       +           P    TL+D
Sbjct: 141 RQHFGEIYEQILNDLQSAGN--AGEYYTPRALTSFMVDRI----------DPTPGETLFD 188

Query: 212 PTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGTGGFL+ A+ H+          +          E +P  H +CV  ML+  +E   
Sbjct: 189 PACGTGGFLSCAIRHMERNHVRTPEQRERMQAGLRAVEKKPLPHMLCVTNMLLHGIEDPS 248

Query: 269 RRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  ++  +TL++        +R    L+NPPFG              ++G    F 
Sbjct: 249 F------VRHDNTLARPLISWGKDERVDIILTNPPFG-----------GREEDGIENNFP 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
               +  + + LFL  +   L+     GGRAA+VL    LF        + ++  LL   
Sbjct: 292 --TFRTKETADLFLALIVRLLKP----GGRAAVVLPDGSLFGEGTK---TRLKEHLLGEC 342

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---- 440
            +  IV LP  +F    +I T L         +             W     EG+K    
Sbjct: 343 NLHTIVRLPNSVFKPYASIGTNLLFFEKGTPTKDI---------WYWEHRVPEGQKAYSM 393

Query: 441 RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTF 473
            + I  +  +  +D +       R+ G  +  +     
Sbjct: 394 TKPIRREHLQDCVDWWGGRERKDRQEGPQAWRVKLEEV 431


>gi|319777321|ref|YP_004136972.1| type i restriction-modification system, m subunit [Mycoplasma
           fermentans M64]
 gi|318038396|gb|ADV34595.1| Type I restriction-modification system, M subunit [Mycoplasma
           fermentans M64]
          Length = 500

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 163/442 (36%), Gaps = 63/442 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT- 96
              L+ +  A E     + + Y +   + +   +      +S    +   L  L +    
Sbjct: 33  MFFLK-VYDAKEREWEFIDKDYKSLIPNELKWST-WATDDHSNNVITGEKLLDLVNNKLF 90

Query: 97  ---------RNNLESYIASFSDN--AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
                     +N E      +++   K     F F      ++   LL ++    + ++ 
Sbjct: 91  PFLKGETVTLSNGEQAFYGINEHTILKQKIARFVFEDAQNYMKDGVLLRQVINVINELDF 150

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D         IYE +++    + +  A +F TPR V      ++          +P +
Sbjct: 151 A-DYKEKHEFGTIYETILK--SLQSAGNAGEFYTPRAVTDFMVKMI----------NPKL 197

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
              + D  CGTGGFLT ++ H+ D       +       +G E +P  + +C+  MLI  
Sbjct: 198 GEKIADFACGTGGFLTSSLKHLEDQKKTVEDENLYDNSVYGIEKKPLPYLLCITNMLIHD 257

Query: 264 LESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++          I   ++L K   D     +F   L NPP+G   ++             
Sbjct: 258 VD-------EPKIFHDNSLEKRVQDYTEADKFDIILMNPPYGGSEKEAVK---------- 300

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
              F   L + S+ + LF+  +  +L+      GR A++L    LF   A + +  I+  
Sbjct: 301 -NNFPADL-RSSETADLFMNVIMYRLKKK----GRCAVILPDGFLF--GADNAKVAIKTK 352

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           LL+   +  I+ +P  +F   T+I T +    +    E     ++    D+    +N   
Sbjct: 353 LLKEFNLHTIIRMPHSVFAPYTSITTNILFFDHTHPTEEVWFYRM----DMPEGYKNF-S 407

Query: 440 KRRIINDDQRRQILDIYVSREN 461
           K + I  +   Q++  + +RE 
Sbjct: 408 KTKPIQLEHFDQVIKWWDNREE 429


>gi|261417778|ref|YP_003251460.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|319767409|ref|YP_004132910.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
 gi|261374235|gb|ACX76978.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|317112275|gb|ADU94767.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
          Length = 634

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 150/410 (36%), Gaps = 54/410 (13%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTN--TRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            F+++    +    E SL  +          +++ +     +   +   ++FS    RL 
Sbjct: 36  KFLELDKERYSLPDELSLGVILKEGAFLAEKVKAVLNEIEAHVPFLKGVYEFSDLFGRLS 95

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               LY +           +     +     E L    G+       + +TP  V  L  
Sbjct: 96  -NNTLYHLLSRIHSFAFTKEQWKQWI-----ESLFVYAGNMAGVEGVELITPAGVNELGI 149

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            LL                  YD   G  G L  A  +             +  +GQE+ 
Sbjct: 150 RLLNMEGGE-----------FYDGASGLSGTLCAASEYARRHHCE------VALYGQEIN 192

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKK 304
               A+    +L               + +G TL++  F      K+F Y + N PFG +
Sbjct: 193 QRAWALGKLRLLFH-------DRTDARLAKGDTLTEPAFVEGNKLKKFDYIMMNFPFGMR 245

Query: 305 WEKDKDAVEKEHKNGELGRFGPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
               +  +   +      RF  G LP+ S   M F++H  + L+      G+A +V+++ 
Sbjct: 246 INSYEQLMNDRYD-----RFVYGRLPRTS-ADMAFILHALSSLKE----NGKAVLVVTNG 295

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            LF G     E+ IR  LL  DLIE+++ALP+ L     I   L +L+  K+ ER G + 
Sbjct: 296 TLFRGGP---EAVIREHLLAADLIESVIALPSSLLDGAAIQINLLVLNKNKSAEREGNIL 352

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
            INA + +   R   +    +  +   +I+ IY       + S+ +  R 
Sbjct: 353 FINAENYYGERRRGRR---YLRQEDIERIVAIYHEGLEIDEVSKFVSVRE 399


>gi|291613558|ref|YP_003523715.1| restriction modification system DNA specificity domain protein
           [Sideroxydans lithotrophicus ES-1]
 gi|291583670|gb|ADE11328.1| restriction modification system DNA specificity domain protein
           [Sideroxydans lithotrophicus ES-1]
          Length = 815

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 168/495 (33%), Gaps = 71/495 (14%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           Y      + + E        SF+    + Y  + L + N        +A +S+    + E
Sbjct: 37  YKFMDDMDAEAEEL--GGKRSFFAGEYARYGWAKLMAPNMGG--FDVLALYSEAIGKMNE 92

Query: 117 DFDFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
           +    +    + K   L     +  + F     +        + + +E+L+   GS+   
Sbjct: 93  NPGIPTLFRDIFKNAYLPYRDPETLRIFLKEINYFTYDHSEKLGDAFEYLLSVLGSQG-- 150

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG- 231
            A  F TPR ++     ++           P     + DP CGT GFL  A  H+     
Sbjct: 151 DAGQFRTPRHIIDFMVEIV----------DPQKGERILDPACGTAGFLISAWKHILKHNT 200

Query: 232 ---------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +       HG ++ P+   + +  + +             ++ +  TL
Sbjct: 201 KKNLGDQLTPEQRAYIAANVHGYDISPDMVRLSLVNLYLHGF-------TDPHVVEYDTL 253

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           + +    +     L+NPPF    +      +         RF     +     +LF+ ++
Sbjct: 254 TSEEKWNETADVILANPPF-MSPKGGIKPHK---------RFSVQATRS---EVLFVDYI 300

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FR 400
           A  L       GRAAI++    +F     S   ++R+ L++N L+ A+++LP+ +F  + 
Sbjct: 301 AEHLSP----NGRAAIIVPEGIIFQSG--SAYKQLRQMLVKNSLV-AVISLPSGVFNPYS 353

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR- 459
             + T + +L      +R  +V  +   +      N G +RR +           Y++  
Sbjct: 354 -GVKTSILLLDKW-LAKRTSEVLFVKVENDG---FNLGAQRRAMAGSGLPDAAAAYLAFR 408

Query: 460 --ENGKFSRMLDYRTFGYRRIKVLRPLRMS--FILDKTGLARLEADITWRKLSPLHQSFW 515
             +      + D   F    +     L  +  + L        EA  +   L P      
Sbjct: 409 HSQEDVTPTIFDSSQFRNAHVVEKTRLGENGDWNLSGERYRIDEARTSSFNLMPFESVCT 468

Query: 516 LDILKPMMQQIYPYG 530
           L+    + +     G
Sbjct: 469 LEYGSSLPKSERRDG 483


>gi|313668371|ref|YP_004048655.1| Type I restriction-modification system DNA methylase [Neisseria
           lactamica ST-640]
 gi|313005833|emb|CBN87288.1| putative Type I restriction-modification system DNA methylase
           [Neisseria lactamica 020-06]
          Length = 533

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/535 (16%), Positives = 195/535 (36%), Gaps = 58/535 (10%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-----SFVKVAGYSFY 81
              +F  +I    L + L    +     +RE+        ++++     + +K      Y
Sbjct: 29  DGNEFK-IISQAFLYKFLNDKYDFEVKQIREEKPDEPIEFVNMDIEGKTAVLKPEHSIKY 87

Query: 82  NTSE---YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL----LY 134
            +        + L      +        FS   +   +   F      +   G       
Sbjct: 88  LSERQNGADFAKLFDDTLTDIAACNAELFSVKTEGGAKIVLFERISQYITDEGRRDDFCR 147

Query: 135 KICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            +    +G              + I+E+LI+ + S       ++ TP  V  +   +L+ 
Sbjct: 148 ALISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVP 207

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
            +      S      +YDP+ G+G  L +  + + +           + + Q++  ++  
Sbjct: 208 EEVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSSN 255

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKD 308
           +         L  +       N+ QG+T+            K+F + +SNPPF   +   
Sbjct: 256 LLR-----LNLILNNLVHSLNNVVQGNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSDF 310

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLS 361
           +D +E E       RF  G+PKI            LF+ H+   L+      G+AAIVL 
Sbjct: 311 RDQLEGEENRE---RFFAGIPKIKAKDTDKMEIYQLFIQHILFSLKE----NGKAAIVLP 363

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +   F       + +IR +L+EN ++  +V++P+++F  T     +  +        +  
Sbjct: 364 TG--FITAQSGIDKKIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK----ANKDN 417

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKV 480
           V LI+A+ L   I++   ++ +++ ++ ++I + +  ++  + FS ++ Y     +   +
Sbjct: 418 VVLIDASGLGKKIKDGKNQKTVLSREEEQKICNTFTHKQAVEDFSVVVGYDEIKAKNYSL 477

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
                    +D   ++  E +      S      + +  + + ++I        F
Sbjct: 478 SAGQYFEVKIDYVDISAEEFEQKMAGFSADLDKLFAESAE-LEKEIKDRLAMLKF 531


>gi|153815628|ref|ZP_01968296.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756]
 gi|145847059|gb|EDK23977.1| hypothetical protein RUMTOR_01864 [Ruminococcus torques ATCC 27756]
          Length = 489

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/451 (15%), Positives = 162/451 (35%), Gaps = 67/451 (14%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEY-------SLSTLGSTNTRN 98
            +E     +  K +    ++I++   +     S  +  S         +   + +     
Sbjct: 28  VIEQLTYLMFAKQIDEREADIEMAELLSGEKQSHIFGESREEQALRWRNFKGMEARALHK 87

Query: 99  NLES----YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +       ++ + + N  + F  +       ++ +   L K+      +    D     +
Sbjct: 88  HFVDRVFIFLINLNSNENSAFSRY-LKHATFKINEPLALQKVVAGLEDL-FENDIKDLDM 145

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+++ +     +     F TP+ +  +   L++          P     + DP C
Sbjct: 146 QGDLYEYMLGKLN--SAGRLGAFRTPKHIRDMMVKLMM----------PTPDMKICDPAC 193

Query: 215 GTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           GT GFL  +  ++     +       +        G + +     +    +++  +    
Sbjct: 194 GTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDETMCRLSCMNLMLHSV---- 249

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              ++  + +  ++SKD      +   L+NPPF       K  + KE+ N  L      +
Sbjct: 250 ---INPQLNKQDSVSKDYQVKDAYDLILANPPF-------KGTINKENINESL----LAI 295

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              +   +LF+      L +    GGR A ++    LF   +      +R+ L+EN  +E
Sbjct: 296 TNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLF--GSSKAHKNLRKELIENQYLE 349

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A++++P+ +F     ++T + I +         KV   +         +   KR+ + ++
Sbjct: 350 AVISMPSGVFKPYAGVSTAILIFTKT-NGTGTDKVWFYDMKADGY---SLDDKRQPVQEN 405

Query: 448 QRRQILDIYV------SRENGKFSRMLDYRT 472
               I++ +        RE  + S M+D + 
Sbjct: 406 DIPDIIERFHKKENEEDRERTEQSFMVDKQE 436


>gi|224543620|ref|ZP_03684159.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523446|gb|EEF92551.1| hypothetical protein CATMIT_02830 [Catenibacterium mitsuokai DSM
           15897]
          Length = 494

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/511 (15%), Positives = 175/511 (34%), Gaps = 77/511 (15%)

Query: 33  KVILPFTLLRRLECALE-PTRSAV--REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
            VI  FT L  ++   E  T+         L + G     + +++           +   
Sbjct: 35  DVIEQFTYLMYMKQLDEAETKEEADCLLYGLEYDGLFPKDKPYLRW----------HHFK 84

Query: 90  TLG-STNTRNNLESYIASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIEL 145
            +G +      +   +  F  N K   E          I ++    LL K+     G+  
Sbjct: 85  DIGSADKMYQIMNDELFPFIKNLKGDGESSYARFMRDAIFKIPTPNLLQKVVTGIEGL-- 142

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             +T    +  ++YE+L+ +  +        F TPR ++++   L+           P  
Sbjct: 143 --NTEEADIKGDLYEYLLNKLNNSG--TNGQFRTPRHIINMMVNLV----------KPVP 188

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAG 258
             T+ DP  GT GFL  A  ++ +            +     + +G +++     +    
Sbjct: 189 TDTICDPAMGTAGFLIGAEEYLREKHEELFLDDKLKEHFNNKMFNGFDMDSTMLRIGAMN 248

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ++   ++       +  I+   +LS+      ++   L+NPPF    + +  A       
Sbjct: 249 LISHYVD-------NPQIEYRDSLSQQNIDENKYSLILANPPFKGSLDYEVVAENL---- 297

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                    + K     +LF+      L      GGR A ++    LF   +      IR
Sbjct: 298 -------LSVCKTKKTELLFIALFLRSL----QVGGRCACIVPDGVLF--GSSKAHKSIR 344

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           + L+EN+ + A++++P+ +F     ++T + + +   T      V   +   +     + 
Sbjct: 345 KELVENNQLHAVISMPSGVFKPYAGVSTAILVFTKT-TTGGTDNVWFYD---MKADGLSL 400

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             KR  + ++    I+  Y   +  K  +  +   F    +         + L       
Sbjct: 401 DDKRSPVEENDIPDIIHRYEHLDEEKDRKRTEQSFF----VPKEEIAENDYDLSINKY-- 454

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
              +I + K+        L  ++ + ++I  
Sbjct: 455 --KEIVYEKVEYRPTHEILGDIEALNKEIEE 483


>gi|134046196|ref|YP_001097681.1| N-6 DNA methylase [Methanococcus maripaludis C5]
 gi|132663821|gb|ABO35467.1| N-6 DNA methylase [Methanococcus maripaludis C5]
          Length = 499

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/519 (15%), Positives = 174/519 (33%), Gaps = 89/519 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++R+E           ++  +   S     S  K      +  S+++         +
Sbjct: 35  LIFMKRMED-------EDIKREQSSRLSGETHVSIFKDNENMKW--SKWTNMEGKEMLNH 85

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            R+N+  ++ S  +  K    +   ++ +  +  A LL +  K    + +          
Sbjct: 86  VRDNVFPFLRSLGE--KDSLYNTYMNNAVFAIPNASLLVEAVKIVENLHI--KEQNRDAK 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++YE+L+    +        F TPR ++ +   L            P +   + DP CG
Sbjct: 142 GDLYEYLLSELKTAGK--NGQFRTPRHIIKMMVEL----------TDPDVGDKICDPACG 189

Query: 216 TGGFLTDAMNHVADCG------------------------SHHKIPPILVPHGQELEPET 251
           T GFL  A  ++                              H        +G E +   
Sbjct: 190 TAGFLIAAYEYLLKKHSSAEFIKIDEDGNEYGYKGDKLDSKGHDFLRNETFYGSEFDQTM 249

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             + +  +++  +E       + NI Q ++L +       ++  L+NPPF    +K +  
Sbjct: 250 VRIALMNLMMHGIE-------NPNIFQKNSLVECDKYKGHYNVILANPPFKGSVDKSEIE 302

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                   +               +LFL  + N L      GGR A+++    LF     
Sbjct: 303 GNFTTTTTKT-------------ELLFLELMYNLL----TIGGRCAVIIPDGVLF--GNS 343

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
               +IR  +L+N  ++A++++P+ +F     ++T + I +  +  +   K+   +   +
Sbjct: 344 KAHKQIRERILKNCRLDAVISMPSGVFKPYAGVSTGILIFTKGEPTK---KIWFYD---M 397

Query: 431 WTSIRNEGKKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
                    KR  I+       I++ + +R N           F    + V    +  F 
Sbjct: 398 QADGFTLDDKRNKIDGKGDIPDIIERFKNRFNEPNDDKTKKHFF----VPVEEIFKNDFD 453

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
           L  +   ++  +        + Q+  L +   + +    
Sbjct: 454 LSLSKYKKINYEEVEYDDPKVIQNRILKLELGIQKNFEE 492


>gi|301059619|ref|ZP_07200528.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300446265|gb|EFK10121.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 601

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 157/427 (36%), Gaps = 78/427 (18%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES---------FVKVAGYSFYNTSE 85
           I     +R+L  AL+  R A  ++ +   G +   ++           +   +   N + 
Sbjct: 32  ITYLLFIRQL-KALDRARVAGEKESIYHKGPDDPEDADFEKCRWSYIRQNPSFQLLNDTV 90

Query: 86  YSLSTLGSTNTR--NNLESYIASFSDNAKA---IFEDFDFSSTIARLEKAGLLYKICKNF 140
           +              N ++ +   S        I +     +    L++A  L      F
Sbjct: 91  FPWLRSLEDRIGSGQNGDTTLGRISGRLSDAYFILD----VNKAETLKRAVSLID--DLF 144

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             ++    +V   +M +I+E+L+             F TPR V+     LL         
Sbjct: 145 RQLDTR--SVNSDIMGDIFEYLLEEVKESGK--NGQFRTPRHVIRFMVQLL--------- 191

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI----------------------PP 238
             P + +T+ DP CG+GGFL +++ H     +   +                        
Sbjct: 192 -EPELGKTILDPACGSGGFLLNSLLHWKAANTDEGVLRLEWDGAPHDTFPVWPQGKQYNF 250

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCL 296
                G + +     +    +++  LE       +  + Q  +LSK L   +   + Y L
Sbjct: 251 SSFFRGYDNDRTMVRIAWMNLILHDLE-------APEVHQLDSLSKRLSDDESGAYDYIL 303

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPKISDGSMLFLMHLANKLELPPNGGGR 355
           +NPPF    ++D  +   +       R G G +P  +   +LF+  + + L      GGR
Sbjct: 304 ANPPFTGNVDRDDLSENWQR----FPRSGKGAVPLTTKSELLFVWLMLDLL----INGGR 355

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414
           AA+++    LF   +     E+RR LL  + +EA+V+LP ++F   + + T + +     
Sbjct: 356 AAVIVPDGVLF--GSTKAHRELRRQLLFENTLEAVVSLPPNMFQPYSGVKTSILLFQKAG 413

Query: 415 TEERRGK 421
               R +
Sbjct: 414 EPAARSQ 420


>gi|302879962|ref|YP_003848526.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2]
 gi|302582751|gb|ADL56762.1| N-6 DNA methylase [Gallionella capsiferriformans ES-2]
          Length = 540

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 168/471 (35%), Gaps = 88/471 (18%)

Query: 36  LPFTLLRRLECALEPT---RSAVREK-YLAFGGSNIDLESFVKV--AGYSFYNTSEYSL- 88
           L F     L   ++     ++ V ++ Y +       L + +    +       S +   
Sbjct: 33  LSFLFFFYLIEGIDAENTMKAKVMKQPYESLFAGEWTLRNPLNAPESDSKTITKSRFKWS 92

Query: 89  ---STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIE 144
                L   +    +   +  F          F+F +     +++  +L ++     G+ 
Sbjct: 93  VWAKGLSGESLVRFVRDEVFPFFAEVAE-RSAFNFMNGARLTIDEPTVLTQVVNLVDGL- 150

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              D        +++EH++R+           F TPR V+     +L           P 
Sbjct: 151 -RLDQADADTKGDLFEHVLRQIKQAG--ELGQFRTPRHVIRAIVEML----------DPK 197

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCG--------------------------SHHKIPP 238
           +  T+YDP  GT GFL  A NH+                              +   +  
Sbjct: 198 IGETIYDPAAGTAGFLAAAYNHIRLANSSPSGISDAESDGKLQKRGIGDKLSAAQVSVLQ 257

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-------LFTGKR 291
               +G +++P+   +    + +R L +         ++ G T ++D           + 
Sbjct: 258 NSTFYGNDVDPKMVRLATMNLTLRGLPNVRI-----QLRNGLTTTQDNERKAELGLPLEG 312

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +H  L+NPPF  +   DKD +  E K G            +   +LFL ++ + L     
Sbjct: 313 YHVVLANPPFSGRV--DKDRIVDEVKVGT----------STATEILFLKYMMDCLRP--- 357

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GGR  +++    LF   +     E+RR L+EN+ +EA+++LP  +F   + + T +   
Sbjct: 358 -GGRCGVIIPEGVLF--GSTGAHKELRRQLIENNTVEAVLSLPGGVFQPYSGVKTSVLFF 414

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              K      KV  ++A +    +  +      I  D    + D Y+SR+ 
Sbjct: 415 ---KKGGTTDKVMFLHADNDGYKM--DANHDTPIAADDLPMLADAYLSRKE 460


>gi|317502417|ref|ZP_07960581.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090322|ref|ZP_08339206.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896155|gb|EFV18262.1| N-6 DNA methylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330401457|gb|EGG81042.1| hypothetical protein HMPREF1025_02789 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 489

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/510 (14%), Positives = 182/510 (35%), Gaps = 80/510 (15%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEY-------SLSTLGSTNTRN 98
            +E     +  K +    ++I++   +     S  +  S         +   + +     
Sbjct: 28  VIEQLTYLMFAKQIDEREADIEMAELLSGEKQSHIFGESREEQALRWRNFKGMEARALHK 87

Query: 99  NLES----YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
           +       ++ + + N  + F  +       ++ +   L K+      +    D     +
Sbjct: 88  HFVDRVFIFLINLNSNENSAFSRY-LKHATFKINEPLALQKVVAGLEDL-FENDIKDLDM 145

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+++ +     +     F TP+ +  +   L++          P     + DP C
Sbjct: 146 QGDLYEYMLGKLN--SAGRLGAFRTPKHIRDMMVKLMM----------PTPDMKICDPAC 193

Query: 215 GTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           GT GFL  +  ++     +       +        G + +     +    +++  +    
Sbjct: 194 GTAGFLISSAEYIRSEYGNKMTAEQWEKYGSETFTGFDTDETMCRLSCMNLMLHSV---- 249

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              ++  + +  ++SKD      +   L+NPPF       K  + KE+ N  L      +
Sbjct: 250 ---INPQLNKQDSVSKDYQVKDAYDLILANPPF-------KGTINKENINESL----LAI 295

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              +   +LF+      L +    GGR A ++    LF   +      +R+ L+EN  +E
Sbjct: 296 TNTTKTELLFVALFIRLLRV----GGRCACIVPDGVLF--GSSKAHKNLRKELIENQYLE 349

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A++++P+ +F     ++T + I +         KV   +         +   KR+ + ++
Sbjct: 350 AVISMPSGVFKPYAGVSTAILIFTKT-NGTGTDKVWFYDMKADGY---SLDDKRQPVQEN 405

Query: 448 QRRQILDIYV------SRENGKFSRMLDYRTF---GY----RRIKVLRPLRMSFILDKTG 494
               I++ +        RE  + S M+D +     GY     + K +  + + +   +  
Sbjct: 406 DIPDIIERFHKKENEEDRERTEQSFMVDKQEIIDNGYDLSINKYKKIEYVPVEYPPTEEI 465

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           LA +E      KL+        ++   + +
Sbjct: 466 LAEIE------KLNEEITKETAELRALLRK 489


>gi|190150799|ref|YP_001969324.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307264082|ref|ZP_07545679.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915930|gb|ACE62182.1| type I restriction-modification system, M subunit [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306870560|gb|EFN02307.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 489

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/433 (17%), Positives = 160/433 (36%), Gaps = 53/433 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +  A E     + + Y +     +  +++ K         +   L    +     
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91

Query: 99  NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            L++  I++ +   + I     F      ++   LL ++      I             +
Sbjct: 92  ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE++++    + +  A +F TPR V      ++           P +   + D  CGTG
Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+  +                 +G E +   H +C+  +L+  ++       + N
Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250

Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   +TL    KD     +F   L NPP+G    +                F   L + S
Sbjct: 251 VHHDNTLEKPVKDYTENDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKMAIKQKLMSEMNLHTVIR 352

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L    D+    +N   K + +  +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPQGYKNF-SKTKPMKLEHFNE 407

Query: 452 ILDIYVSRENGKF 464
           +++ + +R+  + 
Sbjct: 408 VMEWWHNRQAIEI 420


>gi|319955096|ref|YP_004166363.1| site-specific DNA-methyltransferase (adenine-specific)
           [Cellulophaga algicola DSM 14237]
 gi|319423756|gb|ADV50865.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Cellulophaga algicola DSM 14237]
          Length = 476

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/447 (18%), Positives = 153/447 (34%), Gaps = 69/447 (15%)

Query: 38  FTLLRRLECALEP------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              ++      E          +   ++L +     D E     A   F  T  +     
Sbjct: 34  MLFMKIFADKEEEWEITIDDYQSPIPEHLKWQNWAADDEGLTGDALMEFIETELF----- 88

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                   L+    + S  AK I     F  T   ++   L  ++    + I+   D+  
Sbjct: 89  ------PALKELDITLSPQAK-IIRSV-FDDTYNFMKNGTLFRQVINVINQIDF-NDSKE 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V +++YE +++    + +  + ++ TPR V      ++          +P +  ++ D
Sbjct: 140 SHVFNDLYETILKDL--QSAGSSGEYYTPRAVTQFMVDII----------NPQLGESVLD 187

Query: 212 PTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P CGTGGFLT  ++HV +       +        G E +P  H +C   +++   +    
Sbjct: 188 PACGTGGFLTCTIDHVRNQVKDYTQRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDL--- 244

Query: 270 RDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ + LSK   D     +    LSNPPFG     ++D  E             
Sbjct: 245 ----PVVRRDNLLSKPYADWGAKDKLDIILSNPPFGG---VEEDGTETNFPKKF------ 291

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              +  + + LFL  +   L+      GR AIVL    LF        + ++  LL+   
Sbjct: 292 ---RTKETADLFLALIIKLLKDK----GRCAIVLPDGTLFGEGMK---TRLKEELLDKCN 341

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  IV LP  +F   T+I T L         +             +        K + IN
Sbjct: 342 LHTIVRLPNGVFNPYTSIKTNLLFFEKGTPTKDVWYY-----EHQYPKGAKSYNKTKPIN 396

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRT 472
             +       +  R   +++  +    
Sbjct: 397 IKEFDVEKKWWNKRVENEYAWKVSIED 423


>gi|254467344|ref|ZP_05080755.1| subunit M of type I restriction-modification system
           [Rhodobacterales bacterium Y4I]
 gi|206688252|gb|EDZ48734.1| subunit M of type I restriction-modification system
           [Rhodobacterales bacterium Y4I]
          Length = 481

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 88/398 (22%), Positives = 142/398 (35%), Gaps = 68/398 (17%)

Query: 38  FTLLRRLEC---ALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+ ++     LE TR        ++L +     D E         F NT  + +L  
Sbjct: 33  MFFLKIIDDQDEELEFTRDDYTSPIPEHLQWRAWAADPEGITGDELQDFVNTQLFPTLKE 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L  T +R  +           +++FE          ++   L+ ++    S ++      
Sbjct: 93  LPPTTSRARV----------VRSVFE-----DAYNYMKSGQLMRQVINKISEVDF-NSLS 136

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             +   ++YE L+     + +  A ++ TPR V       L           P     L 
Sbjct: 137 ERQHFGDVYEQLLNDL--QNAGNAGEYYTPRAVTAFMVQQL----------DPQPGEILM 184

Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP CGTGGFLT AM H+ D        +          E +P  H +C   ML+  +E  
Sbjct: 185 DPACGTGGFLTCAMRHMRDRYVKRPEDEAKMQASLRAVEKKPLPHMLCTTNMLLHNIE-- 242

Query: 268 PRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   ++  +TL++        +R    LSNPPFG K E   +    + K  E    
Sbjct: 243 ----EPSWVKHDNTLARPLISWTKDERVDIILSNPPFGGKEEDGIENNFPQFKTRE---- 294

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  +D   LFL  +   L+      GRAA+VL    LF       ++ ++  LL  
Sbjct: 295 ------TAD---LFLALIIRLLKK----NGRAAVVLPDGSLF---GEGIKTRLKEHLLTE 338

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421
             +  IV LP  +F    +I T L         +    
Sbjct: 339 CNLHTIVRLPNSVFKPYASIGTNLLFFEKGSPTQEVWY 376


>gi|254478539|ref|ZP_05091914.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM
           12653]
 gi|214035547|gb|EEB76246.1| N-6 DNA Methylase family protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 476

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/430 (20%), Positives = 154/430 (35%), Gaps = 58/430 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              LR L+   E    A  +         ID E       +  + T ++    L +    
Sbjct: 20  LLFLRFLDAQ-EEEWEAQAQIAGRPYTPIIDSEY-----RWRHWATKDWPADELLA-FVH 72

Query: 98  NNLESYIASFSDN-AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             L  Y+ S   +  +           +        L  + +  + I  H        +S
Sbjct: 73  GRLIPYLRSLGGDPLRETIRSLFSERNVIVCASGYNLKDVIQIVNEINFH-SQDDIFTVS 131

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            +YE L+RR G   +  A +F TPR VV     L+           P +   +YDP CGT
Sbjct: 132 QVYEELLRRLG-NENRLAGEFYTPRPVVRFVVELV----------DPQIGEAVYDPACGT 180

Query: 217 GGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            GFL +A   +         H+I       GQE +P    + +  M++  +         
Sbjct: 181 CGFLVEAYLWMKQKERTIEDHRILQERTFFGQEKKPVPAFLGLVNMVLHGV-------TV 233

Query: 274 KNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             + + +TL ++     +RF   ++NPPFG    +                     P  S
Sbjct: 234 PRVMRRNTLEENIRNVSERFDVVVTNPPFGGTEGRHIQQNF---------------PIQS 278

Query: 333 DG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           +   +LFL H+  KL+     G R  +V+    LF G A    +E++R LLE   +  +V
Sbjct: 279 NATELLFLQHIMKKLKP--RDGARCGMVVPEGTLFRGGA---FAEVKRDLLEQFNLHTVV 333

Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           +LP   F   +++ T L         +     +L     L   ++    K + I D+   
Sbjct: 334 SLPPGTFAPYSDVKTALIFFERPGPTKEIWYYEL----PLPEGLKKF-SKGKPIQDEHFE 388

Query: 451 QILDIYVSRE 460
           +   ++   +
Sbjct: 389 EARKLWRGWD 398


>gi|292656397|ref|YP_003536294.1| type I restriction-modification system methylation subunit
           [Haloferax volcanii DS2]
 gi|291370225|gb|ADE02452.1| type I restriction-modification system methylation subunit
           [Haloferax volcanii DS2]
          Length = 464

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 88/544 (16%), Positives = 161/544 (29%), Gaps = 99/544 (18%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW-GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M+   G    +   IW     L         + + +     L+ ++            + 
Sbjct: 1   MSRNNGKL-DVEQKIWDICGILREDGMHIGTYVEQVTVLLFLKMMD------------ER 47

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAK 112
             FG  +I+                +   S L   +    LE Y       +        
Sbjct: 48  EQFGSESIE-------------IPEDCQWSVLKEKDGEELLEHYNRVVLPTLGDQDGIVG 94

Query: 113 AIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            IF   +  F + +        L +  +    +E     +   V    YE L++R+  E 
Sbjct: 95  DIFARVNSQFRTPVN-------LREAIREIDEVEW--SAIEVDVKGTAYEALLQRYAEEA 145

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +GA  + TPR  +      +    D    +             GTGGFL  A  H+ + 
Sbjct: 146 -KGAGQYFTPRPAIKAIVKAVDPDHDDDIHDP----------AAGTGGFLIHAFEHILEK 194

Query: 231 --------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       +        G EL PET  + +  + +  L         +N + G +L
Sbjct: 195 TNEGLDLSRDERRELMTENLSGMELVPETRRLGLMNLALHDL-------QPQNFEVGDSL 247

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           S    T + +   L+NPP+G   +K       +                    + F+ H 
Sbjct: 248 SLGPHTDESYDVILTNPPYGGNQKK--KRARDDFMVDTRS-----------PELNFVQHN 294

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401
            + L+     GG   +V+    LF   A      IR  L E+  +  ++ LP   F   T
Sbjct: 295 MSLLKQ----GGECGMVVPDGTLFQSGAAQ---RIRENLFEDFNVHTVLVLPIGAFQPYT 347

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           N+AT +         +   KV   +       I+        + ++     L+ + SRE 
Sbjct: 348 NVATNVIFFEKG---DSTEKVWFYDLRTEMEKIKKS----NPLTEEHFEDFLENFDSREE 400

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
            +    +           +       F          E     + L    +     I+  
Sbjct: 401 SEHYFSVSIEEIEENEHTLSYKQYKEFDDGDEVAPPEELLTELQSLQDTVRENTEAIMDE 460

Query: 522 MMQQ 525
           +  +
Sbjct: 461 LEDE 464


>gi|167767091|ref|ZP_02439144.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1]
 gi|167711066|gb|EDS21645.1| hypothetical protein CLOSS21_01609 [Clostridium sp. SS2/1]
 gi|291559574|emb|CBL38374.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 547

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/490 (17%), Positives = 194/490 (39%), Gaps = 68/490 (13%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRNNLESYIASFS 108
            T    R+ ++++  ++ + E F ++   + ++ S  +L     ST + + +  +    S
Sbjct: 88  ETAQLKRKHFISYLFNHKNDEKFNELFDSTLWDISNINLDVFSVSTGSGDKIRLFDEHLS 147

Query: 109 DNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            N        DF  + I +L            FS  E+            I+E+LI+ + 
Sbjct: 148 QNVTESNRRSDFCKAMIDKLVT----------FSFSEVFSQKYDFFA--TIFEYLIKDYN 195

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +   ++ TP  +  +   +++               T+YDP  GTG  +    + +
Sbjct: 196 KDFGK-YAEYYTPHSIASIIARIMVP--------KGTQNVTVYDPAAGTGTLVLALAHEI 246

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +             + Q++  +++       L   L  +       ++  G TL     
Sbjct: 247 GENN--------CTIYTQDISQKSN-----EFLRLNLILNNLVHSLGHVVHGDTLLSPQH 293

Query: 288 TG------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS------ 335
                    +F Y +SNPPF   +  ++D +  ++      RF  G+P + +        
Sbjct: 294 LNHQKNGLMKFDYIVSNPPFNVDFSDNRDTLAGDN---YKERFWAGVPNVPNKKKDSMAI 350

Query: 336 -MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             +FL H+   ++      GRAAIV+ +  L    A      IR ++++  ++  +V++P
Sbjct: 351 YQMFLQHIIFSMKENS---GRAAIVVPTGFL--TAATGIPKRIREYIVKERMLRGVVSMP 405

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR-IINDDQRRQIL 453
           +++F  T     +  L N K      K  L++A+ L T ++ +GK +R I++ ++   I+
Sbjct: 406 SNIFATTGTNVSVIFLDNSKKY---DKAILMDASKLGTKVKVDGKNQRTILSFEEIENII 462

Query: 454 DIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE-ADITWRKLSPLH 511
           + + + EN + FS ++D     Y +I+  +    +    +  +  +E     ++     +
Sbjct: 463 NTFNNLENKEDFSVVVD-----YDKIEQKKYSFSAGQYFEVKIKYIELTQEEFKTKMTEY 517

Query: 512 QSFWLDILKP 521
                ++   
Sbjct: 518 TEKLTELFAE 527


>gi|114566063|ref|YP_753217.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336998|gb|ABI67846.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 489

 Score =  158 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/496 (15%), Positives = 156/496 (31%), Gaps = 79/496 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNT 96
              +R L+      +    E   A  G  +        AG        +S   T  S   
Sbjct: 35  LMFIRSLD-----EKELEMESVEALSGEEMPKIFPQDKAGQDM----RWSKFKTKDSRAI 85

Query: 97  RNNLESYIASFSDNAKA----IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
            + + S +  F           F  +     +  +    +L KI      +    D    
Sbjct: 86  YDIVGSKVFPFIKAMNGKNTSAFSRY-MQDAMFLIPTPQVLQKIITGLDEL-YEHDIKDL 143

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE+++ +  +        F TP+ +  +   LL           P     + DP
Sbjct: 144 DMQGDVYEYMLGKLSTAG--QNGQFRTPKQIRDMMVRLL----------DPAPDNKVCDP 191

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG------QELEPETHAVCVAGMLIRRLES 266
            CGT GFL     ++ +       P      G       + +     +    +++  +  
Sbjct: 192 ACGTAGFLVSIAEYIREKYETEMTPEQWEHFGGAMFTGFDTDRTMLRISAMNLMLHSI-- 249

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                    I+   ++SK       +   L+NPPF      D +++    K         
Sbjct: 250 -----TQPRIEYVDSVSKQNSISSAYDIILANPPFTGTI--DTESINDNLK--------- 293

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            +       +LF+      L      GGR + ++    LF          +R+ L+EN  
Sbjct: 294 AVCSSKKTELLFVALFLRMLRK----GGRCSCIVPDGVLF--GTTRAHKALRKELVENHQ 347

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           ++ ++++P+ +F     ++T + + +         KV   +         +   KR  I 
Sbjct: 348 LQTVISMPSGVFKPYAGVSTAILVFTKT-GAGGTDKVWFYDMRADGY---SLDDKRTPIE 403

Query: 446 DDQRRQILDIYV------SRENGKFSRMLDYRTF----------GYRRIKVLRPLRMSFI 489
           D+    I+  +        R+  + S  ++               Y+ I   + +  +  
Sbjct: 404 DNDIPDIIARFHNPEGEADRKPTEQSFFVEKSAIVANDYDLSINRYKEIVYEKVVYDAPA 463

Query: 490 LDKTGLARLEADITWR 505
           +    L +L  DI  +
Sbjct: 464 VIMDRLDKLNLDIAAK 479


>gi|269966770|ref|ZP_06180845.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269828630|gb|EEZ82889.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 452

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/439 (17%), Positives = 160/439 (36%), Gaps = 70/439 (15%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A LL ++ +  S I+++          ++YE+L+ +           F TPR+++ +   
Sbjct: 36  AKLLDQVVQLLSAIDMN----DKDTKGDLYEYLLSKLQQSG--VNGQFRTPRNIIQMMVE 89

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVP 242
           L+           P +  T+ DP+ GT GFL  A+ +V +          + K     + 
Sbjct: 90  LM----------QPKVGDTICDPSSGTCGFLMAAVEYVEEHHAKEVNKPDNRKHFNNEMF 139

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPP 300
            G + +     +    ML+  +E       + ++    +L    D    + ++  L+NPP
Sbjct: 140 TGFDFDKHMLRIGAMNMLLHGIE-------NPSVHYRDSLQDQGDENISEAYNLILANPP 192

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLP---------------------KISDGSMLFL 339
           F    + D  A +     G+        P                           +LFL
Sbjct: 193 FKGSVDFDIVAPDLLRALGKNPVVKKTAPKFKTEIDEDGNEVQVEVKKKKPTEKSELLFL 252

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
             +   L++    GGRAA+++    LF   +      IR+ ++++  +EA+++LP+ +F 
Sbjct: 253 ALILRMLKV----GGRAAVIIPDGVLF--GSTKAHKTIRQKIVQDQKLEAVISLPSGVFK 306

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRNEGKKRRIINDDQRRQILDI 455
               ++T + I +   +      V   +           R +  K       ++  I DI
Sbjct: 307 PYAGVSTAILIFTKTNSG-GTDNVWFYDMQADGYSLDDKRTQLFKDGETATHEQSNIADI 365

Query: 456 YVSRENGKFSRMLDYRTF-GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-LHQS 513
               +               Y+R K  +    SF++    +   + D++  +    +++ 
Sbjct: 366 IARFKTLTNEDSTPNSDSPEYKRNKTEQ----SFMVPVADITNNDFDLSINRYKEVVYEE 421

Query: 514 FWLDILKPMMQQIYPYGWA 532
              D  K ++++I      
Sbjct: 422 VQYDAPKEILKRIKDLQNK 440


>gi|257467221|ref|ZP_05631532.1| type I restriction-modification system M protein [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 283

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 27/226 (11%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300
             GQE+      +    M +  +  +     + +I++G TL   L   ++ F   +SNPP
Sbjct: 14  FFGQEINMTNFNLARMNMSLHNINYN-----NFSIKRGDTLLNPLHNEEKPFDAIVSNPP 68

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           +  KW  D D            RF P   L   S     F+MH  + L       GRAAI
Sbjct: 69  YSIKWVGDADPT-----LINDERFAPAGKLAPKSYADYAFIMHSLSYLSSK----GRAAI 119

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V      +   A   E  IR++L++N+ ++ ++ LP +LFF T+IAT + +++  KTE  
Sbjct: 120 VCFPGIFYRKGA---ERTIRKYLVDNNFVDCVIQLPDNLFFGTSIATCILVMAKNKTE-- 174

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             +V  I+A+  +    N      I+ +     I++ + +RE  ++
Sbjct: 175 -NRVLFIDASKEFKKETN----NNILEEKNINTIVEEFRNREEKEY 215


>gi|282932148|ref|ZP_06337601.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281303727|gb|EFA95876.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 203

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 32/234 (13%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-PDTVPDRVMSNIY 159
              I   +++ + I      +     L+++  L  +    S I +   +     ++  +Y
Sbjct: 1   MESIEKDNESLRGILSK---NYESPDLDRS-RLGGVVDLISDINVGGKEAKERDILGRVY 56

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+ +++F S   +   +F TPR VV     ++                T+YDP CG+GG 
Sbjct: 57  EYFLQKFASNEKKNGGEFYTPRSVVKTLVEMV-----------EPFKGTVYDPCCGSGGM 105

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
              +   V +          L  +GQE  P T  +    + IR ++++     +      
Sbjct: 106 FVQSEQFVQEHQGQI---ADLSVYGQESNPTTWKLAKLNLAIRGIDNNFGAHQA------ 156

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            T + DL  G  F Y L+NPPF  K    +       K  +  R+  G+P   +
Sbjct: 157 DTFTNDLHKGTHFDYILANPPFNVKKWGGE-------KLKDDPRWKYGIPPEGN 203


>gi|330971618|gb|EGH71684.1| type I restriction-modification system, M subunit, putative
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 136

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
            + +  A F+W  A+ L GDFK + +G++ILPFTLLRR+EC L PT+  V ++       
Sbjct: 4   ENHSQTAAFLWSIADLLRGDFKQSQYGRIILPFTLLRRMECVLTPTKDEVIKQTFAQEGR 63

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +     ++ AG  F+N S  +L TL  T T  +L SY+ SFS +A+ IFE F F   
Sbjct: 64  PDTVREMILLRAAGQQFFNASPLTLGTLSDTQTAADLMSYVQSFSKDAREIFEHFHFEDF 123

Query: 124 IARLEKAGLLYKI 136
           + +L  A LLY++
Sbjct: 124 VQQLATANLLYQV 136


>gi|293570791|ref|ZP_06681840.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E980]
 gi|291609144|gb|EFF38417.1| type I restriction-modification system, M subunit [Enterococcus
           faecium E980]
          Length = 489

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 165/496 (33%), Gaps = 86/496 (17%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +  A E T   + + Y +     +             +         L      +
Sbjct: 34  LFLK-IYDAKEETWELLNDNYTSIIPEGLKWRD---------WAVDRKDGEALTGDALLD 83

Query: 99  NLESYIASFSDNAK--------AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
            + + +     N +         +   + F       +   LL ++      I+   +  
Sbjct: 84  FVNNTLFPTLKNLEIDETTPMSQVIVRYAFEDANNYQKDGVLLRQVVNIIDEIDFT-EYK 142

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                  IYE  ++   S  +  A +F TPR V       +           P +   + 
Sbjct: 143 ERHEFGAIYESFLKDLQSAGN--AGEFYTPRAVTDFMVKAV----------KPVLGDKIG 190

Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           D  CGTGGFLT A+N +     +   ++       +G E +   H +CV  MLI  ++  
Sbjct: 191 DFACGTGGFLTSALNELDKQVGNSLENREIYNKSVYGIEKKSLPHMLCVTNMLIHDID-- 248

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  NI  G+ L  D    ++   F   L NPP+G   +                  
Sbjct: 249 -----DPNILHGNALETDYKELRKMEPFDVVLMNPPYGGSEKDSVKVNFPTEL------- 296

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                + S+ + LF+  +  +L+      GRAA++L    LF     +G+  I++ L   
Sbjct: 297 -----RSSETADLFMNVIMYRLKK----NGRAAVILPDGFLF--GTDNGKFNIKKKLFSE 345

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             +  +V +P  +F   T I T +    N +  +           D+    +N   K R 
Sbjct: 346 FNLHTVVRMPHSVFAPYTPIRTNILFFDNTEPTKETW----FYRVDMPEGYKNF-SKTRP 400

Query: 444 INDDQRRQILDIYVSRENGKF-----------------SRMLDYRTFGYRRIKVLRPLRM 486
           +  +     L+ + +RE  +                  S  +D   F +    +L P+ +
Sbjct: 401 MKLEHFNDALNWWENREEIEVDGFPKAKRYMIDEIIERSYNIDLCGFPHEEEVILEPMDL 460

Query: 487 SFILDKTGLARLEADI 502
                +   A L A+I
Sbjct: 461 IQEY-QEKRASLNAEI 475


>gi|332877499|ref|ZP_08445246.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684605|gb|EGJ57455.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 498

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/525 (14%), Positives = 175/525 (33%), Gaps = 77/525 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK---VAGYSFYNTSEYS-LST 90
           I     ++ L+   +  + A+         +    +             YN   +     
Sbjct: 32  ITYLLFMKMLDDK-QLEKEAIANLIGDLLLNPTFPDGMWHNPTTDQDVPYNEMRWHVFKE 90

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPD 148
           +  T   N + + +  F          +      T+ ++  A  L ++ +    I     
Sbjct: 91  MEPTKMLNRVRNDVFIFLRYVGKEGSAYSKAMEDTVFQITDARFLSRVIEGIDEI----S 146

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           +    +M ++YE+++    +        F TPR ++ +   L+    D           T
Sbjct: 147 SDGADMMGDVYEYMLGIMAASG--TNGQFRTPRHIIRMMVELMRPTLDD----------T 194

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP  G+ GF+ +A  ++ +  S         +     + HG + +     +    M++
Sbjct: 195 ICDPAMGSAGFIMEAAKYITEHQSDELLNIEEKERFRKEIFHGSDSDASMLRIGCMNMML 254

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             ++         N+   ++LS +     R+  CL+NPPF    + D  A   +      
Sbjct: 255 HDVD-------EPNLYYRNSLSDENDDTNRYTLCLANPPFAGSLDTDDIAHTLKAAV--- 304

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                   K     +LFL  +   L      GGR A ++  + L  G +      IR  L
Sbjct: 305 --------KTKKTELLFLALMMRML----QSGGRCASIVPDTVL-TGDSK-AYKTIRSAL 350

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           ++N  ++A++ +P+ +F   + ++T + I +         KV   +      S+  +   
Sbjct: 351 VDNHCMQAVITMPSGVFQPYSGVSTAIIIFTKT-GAGGTDKVWFYDMRADGFSLTTQRTP 409

Query: 441 RRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
           +   ND     ++  + + E     SR                    SF +    +    
Sbjct: 410 QPEQND--IPDVISRFHNLEAETDRSRK-----------------EQSFFVTADEIRANG 450

Query: 500 ADITWRKLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSN 543
            D+++++   + +     +  + ++ ++              K  
Sbjct: 451 YDLSYKRYHEVEREAVEYEAPETIIARMEKRQKTIDAAFAEFKKL 495


>gi|207092295|ref|ZP_03240082.1| type I restriction enzyme M protein [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 543

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 89/549 (16%), Positives = 185/549 (33%), Gaps = 92/549 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83
              ++  +I    L + L    E        +      +  D + F K     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNKEEKEDFFITLTD 85

Query: 84  -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127
                   +  LS L   +  +N     L++     S N   +F       T   L    
Sbjct: 86  KRLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESI 145

Query: 128 -----EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173
                E++        L    K F+  +   +          + I+E+L++ + S+    
Sbjct: 146 SQYINEESKRANFTRSLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGK 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL++         P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++     +      KN  +G+TL+    +     
Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKDYKG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           +  Y +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  
Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AI++ +   F       E++I R L++  L+  ++ +P+ +F  T  
Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVICMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
              +       +E    +V LI+A+ L         K+  +       IL+ + ++    
Sbjct: 414 NVSIIFFQKTPSE---DEVVLIDASKLGEEYTENKNKKTRLRTSDIGLILETFQNKTPKA 470

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFW 515
            F  ++ +     +   +              +++ E +            L    QS  
Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530

Query: 516 LDILKPMMQ 524
            +IL+ +  
Sbjct: 531 QEILETLKG 539


>gi|197104449|ref|YP_002129826.1| type I restriction-modification system, M subunit [Phenylobacterium
           zucineum HLK1]
 gi|196477869|gb|ACG77397.1| type I restriction-modification system, M subunit [Phenylobacterium
           zucineum HLK1]
          Length = 485

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 101/499 (20%), Positives = 171/499 (34%), Gaps = 95/499 (19%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIAS----FSDNA------ 111
            + D E  +   GY      E+      +     T + L S+I +       N       
Sbjct: 40  DDQDQELELVQPGYESPVPDEFQWRNWAADREGMTGDALLSFINNELFPALKNLPITGPR 99

Query: 112 --KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             +AI     F      ++    L K+      ++   D    +   +IYE L+    S 
Sbjct: 100 RHRAIVVRSVFEDAYNYMKSGHQLRKVVNKIDDVDF-NDLSERQHFGDIYEQLLNDLQSA 158

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A ++ TPR V    T  +           P     L+DP CGTGGFLT AM H+ +
Sbjct: 159 GN--AGEYYTPRAVTAFMTDRI----------DPKPGEILFDPACGTGGFLTCAMRHMRE 206

Query: 230 CG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285
                   +          E +P  H + V  ML+  +E          ++  +TL++  
Sbjct: 207 RYVKRPEDEALMQASLRAVEKKPLPHMLAVTNMLLHGVEDPSF------LRHDNTLARPY 260

Query: 286 --LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  R    L+NPPFG    +++D +E         R      + +D   LFL  + 
Sbjct: 261 ISWGQSDRVDIVLTNPPFGG---QEEDGIETNFPAHFRTR------ETAD---LFLALIV 308

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TN 402
             L+     GGRAA+VL    LF        + ++  L+E   +  IV LP  +F    +
Sbjct: 309 RLLKP----GGRAAVVLPDGTLFGEGMK---TRLKEHLMEECNLHTIVRLPNSVFKPYAS 361

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND----DQRRQILDIYV- 457
           I T L      +  E          T  W     EG+K   +      +     +  +  
Sbjct: 362 IGTNLLFFEKGQPTEE---------TWYWEHRVPEGQKAYSMTKPIRLEHFADCVAWWGG 412

Query: 458 ----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRK 506
               +R+ G  +           R+        ++ LD      +E D       +   +
Sbjct: 413 TAREARQEGPQA----------WRVTAEAVKARNYNLDIKNPHTVEEDHGDPAELLAELR 462

Query: 507 LSPLHQSFWLDILKPMMQQ 525
            +    +   D LK ++ +
Sbjct: 463 AAEAKAAGLRDQLKSILAE 481


>gi|309810115|ref|ZP_07703961.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D]
 gi|308169614|gb|EFO71661.1| N-6 DNA Methylase [Lactobacillus iners SPIN 2503V10-D]
          Length = 462

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 144/412 (34%), Gaps = 43/412 (10%)

Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
             +               +    + I+E+LI+ + +       ++ TP  +  +   LL+
Sbjct: 79  RALVDKLVNFSFEAAFNENYDFFAAIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLV 138

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
             +  L          +YDP+ GTG  L    + +                 Q++   ++
Sbjct: 139 GDNTDLHDIE------VYDPSAGTGTLLIALSHQI--------GQDRCTIFAQDISQRSN 184

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +++  L          +  QG TL      S D    ++F Y +SNPPF   + 
Sbjct: 185 KMLKLNLILNGL-----VSSLDHAVQGDTLTHPYHKSNDGKELRQFDYVVSNPPFKMDFS 239

Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                  +E       RF  G+PK        M         +       G+ AIV+ + 
Sbjct: 240 D-----NREELASMPVRFWGGVPKIPAKKKEKMAIYTLFIQHVINSIKSNGKGAIVVPTG 294

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L        E+++  ++++  +I   +++P+++F  T     +         +   KV 
Sbjct: 295 FL--TVKKGVENKVLHYMVDKKIIRGAISMPSNVFANTGTNVSVLFFDK---SQEHDKVV 349

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLR 482
           LI+A+ +    ++   ++  +  ++  QI+  +   +    FS ++ Y     ++  +  
Sbjct: 350 LIDASKMGEEYKDGNNQKCRLRPNEIDQIVHAFRDNKAIDNFSVVVSYDEIKEKKYSLAA 409

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMMQQIYPYGW 531
                  ++   L   E     +      Q  + +   +   +M+Q+    +
Sbjct: 410 GQYFDVKIEYVDLTPEEFQEKMQNYQNTLQELFNEGDKLKNDIMEQLKKVKY 461


>gi|298248251|ref|ZP_06972056.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
 gi|297550910|gb|EFH84776.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 164/477 (34%), Gaps = 93/477 (19%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           EK G+L +       I  +  +  + +M +I+E+L+     E S     F TPR ++   
Sbjct: 167 EKGGMLERALIQVDNIFKYIGSANEDIMGDIFEYLLSEI--EASGKNGQFRTPRHIIRFM 224

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------- 240
             LL           P     + DP  G+GGFL +++ HV    S   +           
Sbjct: 225 IELL----------DPQFNELICDPAAGSGGFLINSIQHVLKKYSEDTVIYEWNGTPHRI 274

Query: 241 ------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          G + +     +    M++  +E       +  +     LS+ +  
Sbjct: 275 YGVPPKPYPTPESCTGYDNDRTMVRIGWMNMILHGIE-------NPRMILRDALSQRMED 327

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             R+   L+NPPF  +   D   V  +       R  P +   SD  +LFL      L+ 
Sbjct: 328 QDRYDVVLANPPFAGQV--DVGDVHPDLPRHPNNRHRP-ITDKSD--LLFLWQTLRILK- 381

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GGRAA++L    LF   + +   E+RR LL  ++++ +++LP  +F   T + T +
Sbjct: 382 ---NGGRAAVILPEGVLF--GSTNAHKELRRQLLLENIVDGVISLPAGVFSPYTGVKTSI 436

Query: 408 WILSNRKTEERRGK------VQLINAT-----------------DLWTSIRNEGKK---- 440
            I    K E R G+      V   + +                 DLW ++    ++    
Sbjct: 437 LIFHKHKGEYRAGQEPVTKSVWFYDVSIEGYSRDAKRRERPEENDLWDAMEKWSRQIIED 496

Query: 441 -----------RRIINDDQRRQILDIYVSRENGK--FSRMLDYRTFGYRRIKVLRPLRMS 487
                      R  + D++  +I   Y      +   S  L      +  +    P  + 
Sbjct: 497 TKYSKPEIETVRWRLVDEEMLKIFPEYRESLEPELDKSWGLHELFKEFADLPSHHPESLK 556

Query: 488 FIL---DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
             +    +  + +L         + L         K + + I       + V ++ K
Sbjct: 557 AYVQERTRPRIEQLYTQALAICEASLRVQERSSSEKVITENITRAVRDLNRVFDAAK 613


>gi|307748413|gb|ADN91683.1| HsdM [Campylobacter jejuni subsp. jejuni M1]
          Length = 496

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 92/514 (17%), Positives = 181/514 (35%), Gaps = 77/514 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+   +++   L+NPPFG K ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        P  S+   +LFL H+   L+      GR AI++    LF     +  
Sbjct: 309 -------------PIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLFQN--SNAF 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT---EERRGKVQLINATDL 430
             +++ LL++  +E +++LP+ +F   + + T +   S       +    KV        
Sbjct: 350 VSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGLNSILKANDDKVYYYELIPP 409

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
           +        K + +      + L  Y  R+    S ++  +    R        +   + 
Sbjct: 410 YKLT-----KNKPLEYAHFNEFLKYYKERKITANSWLVSKKELEERNY--DLSAKNPNVK 462

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           ++  L   E  +   + +   Q  +L+ LK +++
Sbjct: 463 EEKILRTSEEILNSLEENLKTQQEYLNELKSILK 496


>gi|330907935|gb|EGH36454.1| type 1 restriction-modification system, DNA-methyltransferase
           subunit M [Escherichia coli AA86]
          Length = 544

 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQHDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 ATAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|139438844|ref|ZP_01772304.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC
           25986]
 gi|133775555|gb|EBA39375.1| Hypothetical protein COLAER_01308 [Collinsella aerofaciens ATCC
           25986]
          Length = 492

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 168/501 (33%), Gaps = 66/501 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  A E       + Y +     +   S+   A       +   L    + +  
Sbjct: 33  LFFLK-IYDAKEQEWEFHDDSYQSIIPERLRWYSWAHDAK-DGKALTGDELLDFVNNDLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             LES   +     + +     F+     ++   LL ++           +         
Sbjct: 91  KTLESLELAPDAPLRHVVVKAAFTDANNYMKDGILLRQVINEIDESVDFTEYKERHAFGE 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +  A +F TPR V       L          +P +  T+ D  CGTG
Sbjct: 151 IYETILKDLQSAGN--AGEFYTPRAVTDFMAQAL----------APKLGETVADFACGTG 198

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+  +         +       +G E +   + +CV  ML+  ++       +  
Sbjct: 199 GFLTSALKILDSQVQTPADRELYARSVYGIEKKQLPYLLCVTNMLLHDID-------NPE 251

Query: 276 IQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           +   ++L KD          +F   L NPP+G                     F   L +
Sbjct: 252 VFHDNSLEKDVREWKHKPDGQFDVVLMNPPYGGSESASVQ-----------NNFPVAL-R 299

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LFL  +  +L+     GGRAA+++    LF     S ++EI+R LLE+  +  +
Sbjct: 300 SSETADLFLGLILYRLK----RGGRAAVIIPDGFLF--GQDSAKTEIKRRLLEDMNLHTV 353

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIIN 445
           + LP  +F   T+I T +    N    E             +     EG     K + I 
Sbjct: 354 LRLPQSVFAPYTSITTNVLFFDNTGASE---------GVWFYRMDMPEGYKHFSKTKPIR 404

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI---LDKTGLARLEADI 502
            +    + + + +R + +           Y  +  LR    +F            L  D 
Sbjct: 405 IEHFAPVKEWWENRRDIE---EDGNPKAKYYTVDELRDGGFNFDVCGYPHEEEEILPPDE 461

Query: 503 TWRKLSPLHQSFWLDILKPMM 523
             R           +I + + 
Sbjct: 462 LIRNYKEERAKLDAEIDQKLA 482


>gi|325911636|ref|ZP_08174044.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 143-D]
 gi|325476622|gb|EGC79780.1| putative type I restriction-modification system, M subunit
           [Lactobacillus iners UPII 143-D]
          Length = 542

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 78/545 (14%), Positives = 175/545 (32%), Gaps = 71/545 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECAL--EPTR--------SAVREKYLAFGGSNI----DLESF 72
              ++  +I    L + L      E  +            + Y +     I    D  S 
Sbjct: 28  DGNEYK-IITQVFLYKFLNDKFGYEIKKINPVIAQAEKWEKAYASLSEDEITDLLDELSP 86

Query: 73  VKVAGYSFYNTSEY-------SLSTLGSTNTRNNLESYIASFSDNAKA-----IFEDFDF 120
              +    Y  S             +  +  ++     +  FS          +FE    
Sbjct: 87  DIPSLRPEYLISNLWNQQTKGDFDLIFDSTMKSIANDNLEIFSTQTTEKTKIPLFEKLT- 145

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
                  ++A     +               +    + I+E+LI+ + +       ++ T
Sbjct: 146 PYVTDDAQRAPFARALVDKLVNFSFEAAFNENYDFFAAIFEYLIKDYNTAGGGKYAEYYT 205

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +  +   LL+  +  L          +YDP+ GTG  L    + +            
Sbjct: 206 PHAIATIMARLLVGDNTDLHDIE------VYDPSAGTGTLLIALSHQI--------GQDR 251

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFH 293
                Q++   ++ +    +++  L          +  QG TL      S D    ++F 
Sbjct: 252 CTIFAQDISQRSNKMLKLNLILNGL-----VSSLDHAVQGDTLTHPYHKSNDGKELRQFD 306

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSMLFLMHLANKLELPP 350
           Y +SNPPF   +        +E       RF  G+PK        M         +    
Sbjct: 307 YVVSNPPFKMDFSD-----NREELASMPVRFWGGVPKIPAKKKEKMAIYTLFIQHVINSI 361

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+ AIV+ +  L        E+++  ++++  +I   +++P+++F  T     +   
Sbjct: 362 KSNGKGAIVVPTGFL--TVKKGVENKVLHYMVDKKIIRGAISMPSNVFANTGTNVSVLFF 419

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLD 469
                 +   KV LI+A+ +    ++   ++  +  ++  QI+  +   +    FS ++ 
Sbjct: 420 DK---SQEHDKVVLIDASKMGEEYKDGNNQKCRLRPNEIDQIVHAFRDNKAIDNFSVVVS 476

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD---ILKPMMQQI 526
           Y     ++  +         ++   L   E     +      Q  + +   +   +M+Q+
Sbjct: 477 YDEIKEKKYSLAAGQYFDVKIEYVDLTPEEFQEKMQNYQNTLQELFNEGDKLKNDIMEQL 536

Query: 527 YPYGW 531
               +
Sbjct: 537 KKVKY 541


>gi|26554276|ref|NP_758210.1| type I restriction-modification system M subunit [Mycoplasma
           penetrans HF-2]
 gi|26454285|dbj|BAC44614.1| type I restriction-modification system M subunit [Mycoplasma
           penetrans HF-2]
          Length = 490

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 170/477 (35%), Gaps = 68/477 (14%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +        L     ++  ++L +    ID  S   + G          L  L
Sbjct: 33  MFFLKVYDSKEQEWKILSKDYQSIIPEHLQWRNWAIDNRSNNVLTG--------DDLLKL 84

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            + +    L++   S     +     + F      ++    L ++    + I+       
Sbjct: 85  VNNDLFPTLKNLQISTETPLRQKIVKYVFEDAANYMKDGIFLRQVINVINEIDFT-KYKE 143

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                 IYE +++    + +  A +F TPR +      ++           P +   + D
Sbjct: 144 RHEFGEIYETILK--SLQSAGNAGEFYTPRALTDFIVKMI----------DPKLGERVAD 191

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
             CGTGGFLT A+NH+       +         +G E +P  + +C+  +L+  ++    
Sbjct: 192 FACGTGGFLTSALNHLEKNSKTTEDNVMYNNSIYGIEKKPLPYLLCITNVLLHDVD---- 247

Query: 270 RDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 I   ++L K   D     +F   L NPP+G   ++                  P
Sbjct: 248 ---EPKIFHTNSLEKNVRDYKESDKFEIILMNPPYGGSEKEAIKN------------NFP 292

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              + S+ + LF++ +  +L+      GR A ++    LF     + +  I+  LL    
Sbjct: 293 STLRSSETADLFIILMMYRLKK----NGRCAAIIPDGFLF--DTSNAKVAIKEKLLNEFN 346

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  ++ LP  +F   T I T +    N K  E     ++    D+    +N   K + I 
Sbjct: 347 LHTVIRLPHSVFSPYTTINTNILFFENTKPTEETWFYRM----DMPEGYKNF-SKTKPIK 401

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +    +++ + +RE  +         F  ++       + ++ L+     ++E +I
Sbjct: 402 IEHFNPVIEWWNNREEIEV-----DGNFKAKKYTKEELKKRNYDLNLCSFPQIEEEI 453


>gi|108562863|ref|YP_627179.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107836636|gb|ABF84505.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 543

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/552 (15%), Positives = 189/552 (34%), Gaps = 85/552 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83
              ++  +I    L + L    E        +      +  D + F K     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNKEEKEDFFITLTD 85

Query: 84  -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA- 130
                   +  LS L   +  +N     L++     S N   +F       T   L ++ 
Sbjct: 86  KRLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESV 145

Query: 131 --------------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173
                          +L    K F+  +   +          + I+E+L++ + +  +  
Sbjct: 146 SQYINEESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGK 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL++         P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++     +      KN  +G+TL+    + +   
Sbjct: 252 --GTNSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKECHG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           +  + +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  
Sbjct: 305 KMDFIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AI++ +   F       E++I R L++  L+  +V +P+ +F  T  
Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVVCMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
              +       + +   +V LI+A+ L         K+  +       IL+ + ++ +  
Sbjct: 414 NVSIIFFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRTSDIGLILETFQNKTQKA 470

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F  ++ +     +   +      +       +++ E +   ++ S    S + +     
Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530

Query: 523 MQQIYPYGWAES 534
            + +   G    
Sbjct: 531 QEILETLGNLNY 542


>gi|75675446|ref|YP_317867.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
 gi|74420316|gb|ABA04515.1| N-6 DNA methylase [Nitrobacter winogradskyi Nb-255]
          Length = 484

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 167/510 (32%), Gaps = 84/510 (16%)

Query: 38  FTLLRRLEC---ALEPTRSAV---REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+ ++     LE T+        K L +     D E     A   F N        L
Sbjct: 33  LFFLKIIDDQDQELELTKDGYHSPIPKKLQWRTWAADPEGITGQALLDFVNDE------L 86

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                   +           + +FE          ++   LL ++    + ++   +   
Sbjct: 87  FPALKGLQVSDRPGDRRRVVRDVFE-----DAYNYMKSGQLLRQVVNKITQVDF-NNLDE 140

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            R     YE L+    S  +  A ++ TPR V      ++           P     L+D
Sbjct: 141 RRHFGEFYEQLLNDLQSAGN--AGEYYTPRAVTAFMVQMI----------DPHPGEILFD 188

Query: 212 PTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGTGGFL+ A+NH+          +          E +   H +CV  ML+  +E   
Sbjct: 189 PACGTGGFLSCAINHMEANYVRTPKQREKMQGGLRAVEKKQLPHMLCVTNMLLHGIEDPS 248

Query: 269 RRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  ++  +TL++        +R    ++NPPFG K            ++G    F 
Sbjct: 249 F------VKHDNTLARPLISWSKDERVDIVVTNPPFGGKE-----------EDGIENNFP 291

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
               +  + + LFL  +   L+      GRAA+VL    LF        + ++  L+E  
Sbjct: 292 --TFRTKETADLFLALIVRLLKPD----GRAAVVLPDGTLFGEGVK---TRLKEHLMEEC 342

Query: 386 LIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---- 440
            +  IV LP  +F    +I T L         +             +     EG+K    
Sbjct: 343 NLHTIVRLPNSVFKPYASIGTNLLFFEKGAPTKDI---------WFYEHRVPEGQKAYSM 393

Query: 441 RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            R I  +     +D +       R+    +  +       R   +      +   D    
Sbjct: 394 TRPIRLEHFHGCIDWWGGKARKGRKETPQAWKVSAEEIKARGYNLDIKNPHAVADDHGDP 453

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             L AD+     +    + + D LK ++ +
Sbjct: 454 ETLLADLA---RAEAETATYRDQLKAILAE 480


>gi|254425432|ref|ZP_05039150.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
 gi|196192921|gb|EDX87885.1| N-6 DNA Methylase family [Synechococcus sp. PCC 7335]
          Length = 524

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/483 (14%), Positives = 165/483 (34%), Gaps = 68/483 (14%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              +F  +I    L + L          +     +       +    +            
Sbjct: 29  DGNEFK-IITQVFLYKFLNDKFAYEVKQIDADIDSTESWEQAINQLSEDDFELLQMQLSA 87

Query: 87  SLSTLGSTNTRNNLESYIAS------FSDNAKAI-FEDFDF-----------------SS 122
             + L   +  ++L +   +      F D  + I   + D                  S 
Sbjct: 88  DTAKLKPEHFISHLFAQQNAPEFAKLFDDTLRDIAITNNDIFSVKTDRGGKVTLFDRVSE 147

Query: 123 TIARLEKAGLL-YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTP 180
            I  L +       I                    + I+E+LI+ +  +      ++ TP
Sbjct: 148 FITDLSRRDEFCRAIINKLVAFSFERIFTEKYDFYATIFEYLIKDYNKDSGGKYAEYYTP 207

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V  +  A+L+               + YDP+ G+G  L +  + + +           
Sbjct: 208 HAVAKIMAAILVPEHQ----RGKIQNVSCYDPSAGSGTLLMNIAHAIGE--------ERC 255

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHYCL 296
               Q++  ++ ++         L  +      +N+ QG+TL +      +    F Y +
Sbjct: 256 SIFPQDISQKSSSLLR-----LNLILNNLVHSIQNVIQGNTLLQPYHKDGKKLKLFDYIV 310

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-------LFLMHLANKLELP 349
           SNPPF   +   +D ++ +       RF  G+P +   ++       LFL H+   L+  
Sbjct: 311 SNPPFKMDFSDFRDDLDSDKNKK---RFFAGIPNVPKKAVNKMAIYQLFLQHIIFSLKPE 367

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G+AA+V+ +  L        + +IR  L++  ++  +V++P+++F  T     +  
Sbjct: 368 ----GKAAVVVPTGFL--TAQAGIDKKIRMKLIDEKMLAGVVSMPSNIFATTGTNVSIVF 421

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           +        +  V LI+A+ L  + +    ++ ++ + +  +I+  +  +E      ++ 
Sbjct: 422 IDK----ANKEDVVLIDASGLGETAKEGKNQKTVLTETEEEKIIATFNEKEVVDDFAVVT 477

Query: 470 YRT 472
              
Sbjct: 478 TYD 480


>gi|303250875|ref|ZP_07337068.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307246972|ref|ZP_07529036.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253061|ref|ZP_07534945.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255980|ref|ZP_07537776.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259760|ref|ZP_07541480.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307262530|ref|ZP_07544172.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302650290|gb|EFL80453.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306852114|gb|EFM84355.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306859472|gb|EFM91501.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861070|gb|EFM93068.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866150|gb|EFM98018.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306867765|gb|EFM99599.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 489

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 159/433 (36%), Gaps = 53/433 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +  A E     + + Y +     +  +++ K         +   L    +     
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91

Query: 99  NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            L++  I++ +   + I     F      ++   LL ++      I             +
Sbjct: 92  ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE++++    + +  A +F TPR V      ++           P +   + D  CGTG
Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+  +                 +G E +   H +C+  +L+  ++       + N
Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250

Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   + L    KD     +F   L NPP+G    +                F   L + S
Sbjct: 251 VHHDNALEKPVKDYTENDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKMAIKQKLMSEMNLHTVIR 352

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L    D+    +N   K + +  +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPQGYKNF-SKTKPMKLEHFNE 407

Query: 452 ILDIYVSRENGKF 464
           +++ + +R+  + 
Sbjct: 408 VMEWWHNRQAIEI 420


>gi|83648373|ref|YP_436808.1| type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
 gi|83636416|gb|ABC32383.1| Type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
          Length = 250

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 90/254 (35%), Gaps = 29/254 (11%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
                S    +W  A+ L G  + +++  V+L    L+ +    E  R  + E+      
Sbjct: 11  NKKQRSFEQTLWDTADKLRGSVESSEYKHVVLSLIFLKFISDKFEERRKELIEEGHGGYV 70

Query: 65  SNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLESYI---ASFSDNAKAIFED 117
             +D           FY   E             +    +++ +      + + +    D
Sbjct: 71  DMVD----FYTMKNVFYLPEESRWEFISKNAKQDDIAVKIDTALHTVEKNNKSLRGALPD 126

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             FS     + K   L  +  + + I+   D     V+  +YE+ + +F +   +G  +F
Sbjct: 127 NYFSRLGLDVSK---LAALIDSINNIDTVEDNET-DVVGRVYEYFLGKFAATEGKGGGEF 182

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ VV L   ++                 +YDP CG+GG    ++  V +   + K  
Sbjct: 183 YTPKCVVKLIAEMI-----------EPYHGKIYDPCCGSGGMFVQSVKFVENHRGNKK-- 229

Query: 238 PILVPHGQELEPET 251
             +  +GQE    T
Sbjct: 230 -DISIYGQEQTSTT 242


>gi|154488697|ref|ZP_02029546.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis
           L2-32]
 gi|154082834|gb|EDN81879.1| hypothetical protein BIFADO_02004 [Bifidobacterium adolescentis
           L2-32]
          Length = 492

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 81/492 (16%), Positives = 167/492 (33%), Gaps = 85/492 (17%)

Query: 38  FTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVK-------VAGYSFYNTSEYSLS 89
              ++ L+   LE     +            +    ++        A   F   S+ +  
Sbjct: 35  LMFMKSLDDKELEAENMEMLGMTAKHVFPQTEEGQAIRWSRFKDLPAEQMFDVVSQKAFP 94

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            + + ++         +F+++ +     F F +    LEKA          SGI+     
Sbjct: 95  FIKTMHSD-------NAFAESMED--AAFGF-NKPKTLEKA---------VSGIDELLSN 135

Query: 150 V--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  + ++YE+++ +  +        F TP+ + ++  AL            P   +
Sbjct: 136 YVQDADDLGDLYEYMLSKLNTAG--TNGQFRTPQHIRNMMVAL----------AGPKPGQ 183

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLI 261
            + DP CGT GFL  A   +                      G + +     +    +L+
Sbjct: 184 LICDPACGTAGFLISAAESIRKNHGQEMTEEQWKTFSGEQFTGFDTDQTMVRISAMNLLL 243

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             ++         +I+   +LS+      +F   L+NPPF      D + ++   K    
Sbjct: 244 HSIDH-------PDIRNQDSLSRLNTIRDKFDLILANPPFTGSV--DVEDIDDSLK---- 290

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                 + +     +LF+      L+     GGR   ++ +  LF   +     ++R  L
Sbjct: 291 -----AVVETKQTELLFVALFLRMLK----LGGRCVCIVPNGVLFRSNSK-AYRQLRAEL 340

Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLW---TSIRN 436
           ++N  +EAI+ +P+ +F  +   ++T + + +         KV L N           R+
Sbjct: 341 VDNQRLEAIIYMPSGVFKPYS-GVSTAILVFTKT-DAGGTDKVWLYNMEGDGYTLDDKRD 398

Query: 437 EGKKRRIINDDQRRQ-ILDIYVSRENGKFSRMLDY-------RTFGYRRIKVLRPLRMSF 488
             +K   I D   R   LD    R     S ++           F + +    +  R+ +
Sbjct: 399 PDEKHNDIPDILERWGNLDAEEQRARTDKSFLVPKSEIAENDYDFSFNKYAETKYERIEY 458

Query: 489 ILDKTGLARLEA 500
              +  LA L+ 
Sbjct: 459 PPTEEILADLDD 470


>gi|315608531|ref|ZP_07883516.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella buccae ATCC 33574]
 gi|315249779|gb|EFU29783.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella buccae ATCC 33574]
          Length = 505

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 159/447 (35%), Gaps = 73/447 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ +    E T       Y A     I      +   +  +   E     +      
Sbjct: 33  MFFLK-VYDTQEETWE-----YKASKDRTIFESIIPEELRWRNWAIDEKDGDAMTGDALL 86

Query: 96  --TRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
               + L   +                K +FED +       ++   LL ++    + IE
Sbjct: 87  SFINDKLFPTLKGLEVTRDTPRSKAIVKEVFEDLN-----QYMKNGILLRQVVNVINEIE 141

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              D     +  +IYE +++   S  +  A +F TPR +       L          SP 
Sbjct: 142 F-DDAADRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------SPV 188

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           +  T+ D T GTGGFLT A+N++                  GQE +P  + + +  +L+ 
Sbjct: 189 LGETVGDFTSGTGGFLTSALNYLHKQVKTTDDGRLYQQAVIGQEWKPLPYLLSITNLLLH 248

Query: 263 RLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            +E       S NI+   +L     D     + +    NPP+G   +    +        
Sbjct: 249 DVE-------SPNIRHCDSLGTKMSDFKEEDKVNVIAMNPPYGGSTDAASKSNFPMEL-- 299

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                     + S+ + LF++ +  +L+      GRAA+++    LF       +  I++
Sbjct: 300 ----------RSSETADLFMVLIMYRLK----ANGRAAVIVPDGFLF--GTDGAKLAIKQ 343

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L +  +  I+ LP  +F   T+IAT +   +N +  E   +    + T  +     EG
Sbjct: 344 KMLRDFNLHTIIRLPGSIFAPYTSIATNILFFNNER-AEGAEEGFSTDKTWFYRLDMPEG 402

Query: 439 ----KKRRIINDDQRRQILDIYVSREN 461
                K + +  +  + I D +  R+ 
Sbjct: 403 YKHFSKTKSMKLEHCQPICDWWNDRKE 429


>gi|317488606|ref|ZP_07947149.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325831646|ref|ZP_08164863.1| N-6 DNA Methylase [Eggerthella sp. HGA1]
 gi|316912258|gb|EFV33824.1| N-6 DNA methylase [Eggerthella sp. 1_3_56FAA]
 gi|325486517|gb|EGC88966.1| N-6 DNA Methylase [Eggerthella sp. HGA1]
          Length = 495

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/442 (18%), Positives = 154/442 (34%), Gaps = 68/442 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  A E       + Y +     +   S+   A     + S  +   L      
Sbjct: 33  LFFLK-IYDAKEEEWEFHDDSYESIIPDRLRWHSWAPDAK----DGSALTGDELL-DFVN 86

Query: 98  NNLESYIASF----SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N+L   +A      +   + +     F+     ++   LL ++           +     
Sbjct: 87  NDLFKTLAGLELDQNAPLRQVVVQAAFTDANNYMKDGILLRQVVNAIDESVDFTEYKERH 146

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
               IYE +++   S  +  A +F TPR V      +L          +P +  ++ D  
Sbjct: 147 AFGEIYEIILKDLQSAGN--AGEFYTPRAVTDFMAEML----------APKLGESVADFA 194

Query: 214 CGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           CGTGGFLT A+  +A        +       +G E +   + +C+  ML+  ++      
Sbjct: 195 CGTGGFLTSALKLLAKQVNTPSDQELYSKSIYGIEKKQLPYLLCITNMLLHDID------ 248

Query: 272 LSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
            +  +   ++L  D        G +F   L NPP+G   +                 F  
Sbjct: 249 -NPQVFHDNSLEHDVRDYRHKEGGQFDVVLMNPPYGGSEKAS-----------IQNNFPT 296

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            L + S+ + LFL  +  +L+      GR A+++    LF   A   E + R  LL++  
Sbjct: 297 AL-RSSETADLFLALILYRLKK----NGRVAVIIPDGFLFGQDAAKVEIKRR--LLKDMN 349

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKR 441
           +  +V +P  +F   T I T +    N    E             +     EG     K 
Sbjct: 350 LHTVVRMPQSVFAPYTPITTNILFFDNTGKSE---------GVWFYRMGMPEGYKHFSKT 400

Query: 442 RIINDDQRRQILDIYVSRENGK 463
           + I  +   ++ + +  R+  +
Sbjct: 401 KPIKSEHFNEVREWWNDRKEIE 422


>gi|295092360|emb|CBK78467.1| Type I restriction-modification system methyltransferase subunit
           [Clostridium cf. saccharolyticum K10]
          Length = 493

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/495 (16%), Positives = 167/495 (33%), Gaps = 56/495 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  A E       E+Y++         +   V  ++    +   L    +    
Sbjct: 34  MLFLK-VYDAKEQDWEWDDEEYVSIIPEECRWRN-WAVDDHTGTALTGDKLLNFVNNTLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+      S   K       F+     ++   LL ++     G++   D         
Sbjct: 92  PTLKKLPVDVSTPIKKAIVQTTFADANQYMKDGVLLRQVINVIDGLDFG-DYEESHAFGE 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++    + +  + +F TPR V      ++          +P +   + D  CGTG
Sbjct: 151 IYETILKEL--QSAGSSGEFYTPRAVTDFMAKMI----------NPQIGEQVADFACGTG 198

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +  +       +         +G E +   + +C+  ML+  ++          
Sbjct: 199 GFLTSWLKELETKIETTEDQAAYDRSIYGIEKKQFPYMLCITNMLLHGIDV-------PK 251

Query: 276 IQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I   ++L KD+       +F   L NPP+G   + +               F   L    
Sbjct: 252 IYHDNSLLKDVLDYTMDDQFDVILMNPPYGGNEKTEVKNH-----------FPADLASSE 300

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + F+  +  +L+      GRAA++L    LF     + +  I++ L     +  ++ 
Sbjct: 301 TADL-FMSVIMYRLKK----NGRAAVILPDGFLF--GTDNAKVAIKKKLFSEFNLHTVIR 353

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +P  +F   T+I T +    + K  E     +L    D+    +N   K + +       
Sbjct: 354 MPHSVFAPYTSITTNILFFDHTKPTEETWFYRL----DMPEGYKNF-SKTKPMELKHFAP 408

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +D + +RE       +D      ++         ++ +D  G    E +I   K     
Sbjct: 409 AMDWWNNREE----ITVDGFDKA-KKFTAEEIAARNYNIDLCGYPHEEEEILPPKELIQQ 463

Query: 512 QSFWLDILKPMMQQI 526
                  L   + +I
Sbjct: 464 YQEKRASLNADIDRI 478


>gi|254362757|ref|ZP_04978840.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153094385|gb|EDN75236.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 489

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 157/439 (35%), Gaps = 73/439 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG----------YSFYNTSEY-S 87
             L+ +  A E       ++Y +   + +  +++ +              SF N   + +
Sbjct: 34  LFLK-IYDAKEQEWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPT 92

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L  L            I++ +   + I     F      ++   LL ++      I+   
Sbjct: 93  LKNL-----------PISADTPMNQRIIRAA-FEDNNNYMKNGVLLRQVINIIDEIDFA- 139

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    +IYE++++    + +  A +F TPR V       +           P +  
Sbjct: 140 HYQERHAFGDIYENILK--SLQSAGNAGEFYTPRAVTDFMVQAI----------KPKLGE 187

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            + D  CGTGGFLT A+  +         +       +G E +   H +C+  +L+  ++
Sbjct: 188 RIADFACGTGGFLTSALKVLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID 247

Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                  + N+   + L K   D     +F   L NPP+G    +               
Sbjct: 248 -------NPNVHHDNALEKSVKDYTENDKFDVILMNPPYGGSEIEQIKKNFPTALQ---- 296

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S+ + LF+  +  +L+      GRAA+VL    LF     + +  I++ LL
Sbjct: 297 --------SSETADLFMSVIMYRLKQ----NGRAAVVLPDGFLF--GTDNAKVAIKKKLL 342

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E   +  I+ LP  +F   T+I T +      +          +   D+    +N   K 
Sbjct: 343 EEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETW----VYRLDMPQGYKNF-SKT 397

Query: 442 RIINDDQRRQILDIYVSRE 460
           + +  +   ++++ + +R+
Sbjct: 398 KPMKLEHFNEVVEWWGNRQ 416


>gi|261492692|ref|ZP_05989241.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495869|ref|ZP_05992299.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308461|gb|EEY09734.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311658|gb|EEY12812.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 489

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 157/439 (35%), Gaps = 73/439 (16%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG----------YSFYNTSEY-S 87
             L+ +  A E       ++Y +   + +  +++ +              SF N   + +
Sbjct: 34  LFLK-IYDAKEQEWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPT 92

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L  L            I++ +   + I     F      ++   LL ++      I+   
Sbjct: 93  LKNL-----------PISADTPMNQRIIRAA-FEDNNNYMKNGVLLRQVINIIDEIDFA- 139

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    +IYE++++    + +  A +F TPR V       +           P +  
Sbjct: 140 HYQERHAFGDIYENILK--SLQSAGNAGEFYTPRAVTDFMVQAI----------KPKLGE 187

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            + D  CGTGGFLT A+  +         +       +G E +   H +C+  +L+  ++
Sbjct: 188 RIADFACGTGGFLTSALKVLESQIQTLSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID 247

Query: 266 SDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                  + N+   + L K   D     +F   L NPP+G    +               
Sbjct: 248 -------NPNVHHDNALEKSVKDYTENDKFDVILMNPPYGGSEIEQIKKNFPTALQ---- 296

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                    S+ + LF+  +  +L+      GRAA+VL    LF     + +  I++ LL
Sbjct: 297 --------SSETADLFMSVIMYRLKQ----NGRAAVVLPDGFLF--GTDNAKVAIKKKLL 342

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E   +  I+ LP  +F   T+I T +      +          +   D+    +N   K 
Sbjct: 343 EEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETW----VYRLDMPQGYKNF-SKT 397

Query: 442 RIINDDQRRQILDIYVSRE 460
           + +  +   ++++ + +R+
Sbjct: 398 KPMKLEHFNEVVEWWGNRQ 416


>gi|110834691|ref|YP_693550.1| type I restriction-modification system, M subunit [Alcanivorax
           borkumensis SK2]
 gi|110647802|emb|CAL17278.1| type I restriction-modification system, M subunit [Alcanivorax
           borkumensis SK2]
          Length = 533

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 93/541 (17%), Positives = 165/541 (30%), Gaps = 105/541 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLG 92
               R L+      +  V E+  A      D        G      +F N S   L    
Sbjct: 35  LMFARMLD-----MQEEVAERKAARSKKEFDRLFPNTPEGQLLRWKNFKNLSGKELHKHL 89

Query: 93  STNTRNNLESYIASFSDN-------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
                    S      +        A             A LE       +      ++ 
Sbjct: 90  KNAVYPYFASLGQHAEEEGLGSEGSATQALGHIGEYMQDADLEIKNE-SVLVSAVEMVDN 148

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            P      V  +IYE+L+ +  +        F TPR ++     L+           P  
Sbjct: 149 LP-LTQSDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMVELI----------DPQP 195

Query: 206 IRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILVPH 243
              + DP CGT GFL  AM ++                           + +     +  
Sbjct: 196 TDVICDPACGTAGFLARAMEYLNRVHSSEAGTFEDEDGNKHYTGDLLEPYREHINKQMFW 255

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLS 297
           G + +     V    M++  +          NI    +L+K             F   L+
Sbjct: 256 GFDFDTTMLRVSSMNMMLHGVNG-------ANILYQDSLNKSVKENYPEQEEDFFDIILA 308

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF             E           GL K     +LF+ H+   L+     GGRAA
Sbjct: 309 NPPF--------KGSLDETNTNPD---VLGLVKTKKTELLFVAHILRALK----LGGRAA 353

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
           +++    LF   +     ++R  L+EN+ +E IV+LP+ +F     ++T + + +   + 
Sbjct: 354 VIVPDGVLF--GSSKAHQQLRTELIENNQLEGIVSLPSGVFKPYAGVSTAILLFTKGGST 411

Query: 417 ERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQILDI--YVSRENGKFSRMLDYRTF 473
           E   +V   +   D ++        +    DD    I     Y        S     + F
Sbjct: 412 E---RVWFYDLQADGYSLDDKRTPLKGEGGDDLPDAIAKWKQYRELVEANASEKKIEKAF 468

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS--------PLHQSFWLDILKPMMQQ 525
           G +        + +F+++   +A  + D++  +                 L  L  + ++
Sbjct: 469 GDKT-------QKAFVVNAADIASNKYDLSINRYKEVVYEEEEYEDPKVILKQLMALEEE 521

Query: 526 I 526
           I
Sbjct: 522 I 522


>gi|187732102|ref|YP_001882946.1| N-6 DNA methylase [Shigella boydii CDC 3083-94]
 gi|187429094|gb|ACD08368.1| N-6 DNA methylase [Shigella boydii CDC 3083-94]
 gi|320177258|gb|EFW52265.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella dysenteriae CDC 74-1112]
          Length = 544

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  ++       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVD-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|313159760|gb|EFR59117.1| N-6 DNA Methylase [Alistipes sp. HGB5]
          Length = 502

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 169/463 (36%), Gaps = 79/463 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDL----------ESFVKVAGYSFYNTSEY- 86
              L+ +    E T     E Y +    ++            E+    A  SF N   + 
Sbjct: 33  MFFLK-VYDTQEETWEYKDENYKSIIPEDLRWRKWAVDEKDGEALTGEALLSFVNEKLFP 91

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           +L  L            I + +  AK+I ++  F+     ++   LL ++    + IE  
Sbjct: 92  TLKNL-----------PIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF- 138

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D        +IYE +++   S  +  A +F TPR +      +L           P + 
Sbjct: 139 DDADDRHTFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLG 186

Query: 207 RTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            T  D T GTGGFLT A+N+V+     +           GQE +P  + + +  +L+  +
Sbjct: 187 ETFGDFTSGTGGFLTSALNYVSKSVSSAEDGEKLQNAVVGQEWKPLPYLLSITNLLLHDI 246

Query: 265 ESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           E       + NI    +L     D     +      NPP+G      +D+V+        
Sbjct: 247 E-------APNIANCDSLGTNITDFKESDKVDVIGMNPPYGGST---EDSVKSNFPMQY- 295

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                   + S+ + LF+  +  +L+     GGR  +++    LF       +  ++  L
Sbjct: 296 --------RSSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENL 341

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-- 438
           L    +  I+ LP  +F   T+IAT +   +N + E  +        T  +     EG  
Sbjct: 342 LRKFNLHTIIRLPGSIFSPYTSIATNILFFNNEEAEGCKEG-FKTKETWFYRLDMPEGYK 400

Query: 439 --KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473
              K + +  +    I + +  R+       G+ SR+   +  
Sbjct: 401 HFSKTKPMKVEHTLPIQEWWKDRKEIISDEVGEKSRVFTAQQL 443


>gi|260910278|ref|ZP_05916954.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260635602|gb|EEX53616.1| type I restriction-modification system [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 505

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 166/465 (35%), Gaps = 79/465 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ +    E T       Y A            +   +  +   E   + L      
Sbjct: 33  MFFLK-VYDTQEETWE-----YKASKDHKPFDSIIPEELRWRNWAIDEKDGNALTGDALL 86

Query: 96  --TRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
               + L   + +              K +FED +       ++   LL ++    + IE
Sbjct: 87  TFINDKLFPTLKALEVTRETPRSKAIVKEVFEDLN-----QYMKNGILLRQVINVINEIE 141

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              D     +  +IYE +++   S  +  A +F TPR +       L          +P 
Sbjct: 142 F-DDAEDRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------NPV 188

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           +  T+ D T GTGGFLT A+N++      ++          GQE +P  + + +  +L+ 
Sbjct: 189 LGETVGDFTSGTGGFLTSALNYLQKQVQTTNAGRLYQQSVVGQEWKPLPYLLSITNLLLH 248

Query: 263 RLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            +E       + NI+   +L     D     R +    NPP+G   +    +        
Sbjct: 249 DVE-------APNIRHCDSLGTKMSDFKETDRVNVIAMNPPYGGSTDAAAKSNFPMEF-- 299

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                     + S+ + LF++ +  +L+      GRAA+++    LF       +  I++
Sbjct: 300 ----------RSSETADLFMVLIMYRLKRD----GRAAVIVPDGFLF--GMDGAKLAIKQ 343

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L    +  I+ LP  +F   T+IAT +   +N +  +   +    + T  +     EG
Sbjct: 344 KMLREFNLHTIIRLPGSIFSPYTSIATNILFFNNER-VDGAEEGFSTDKTWFFRLDMPEG 402

Query: 439 ----KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473
                K + +  +  + I D +  R+       G+ SR    +  
Sbjct: 403 YKHFSKTKSMRLEHCQPICDWWNDRKEISSDELGEKSRCFSAKEL 447


>gi|300925836|ref|ZP_07141684.1| N-6 DNA Methylase [Escherichia coli MS 182-1]
 gi|300418088|gb|EFK01399.1| N-6 DNA Methylase [Escherichia coli MS 182-1]
          Length = 544

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|317180666|dbj|BAJ58452.1| Type I restriction enzyme M protein [Helicobacter pylori F32]
          Length = 543

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/544 (15%), Positives = 184/544 (33%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68
              ++  +I    L + L    E               +    E+   F  + ID     
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFSEEEKEDFFLTLIDKRLPK 90

Query: 69  --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121
              +  +       +N ++  L   +      +N      + S +   I  FE      +
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R      L    KNF   +   +          + I+E+L++ + S+      ++ 
Sbjct: 151 EESKRANFTRALLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTN 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    + +   +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLNN 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAIVVPTG--FISAKSGIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                K      +V LI+A+ L         K+  + +     IL+ + ++ +   F  +
Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRESDIDLILETFQNKTQKADFCTL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI-------TWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFEKLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|268686736|ref|ZP_06153598.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627020|gb|EEZ59420.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 495

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 149/353 (42%), Gaps = 44/353 (12%)

Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
             +    +G              + I+E+LI+ + S       ++ TP  V  +   +L+
Sbjct: 109 RALISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILV 168

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
             +      S      +YDP+ G+G  L +  + + +           + + Q++  ++ 
Sbjct: 169 PEEVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSS 216

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEK 307
            +         L  +       N+ QG+T+            K+F + +SNPPF   +  
Sbjct: 217 NLLR-----LNLILNNLVHSLNNVVQGNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSD 271

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVL 360
            +D +E +       RF  G+PKI            LF+ H+   L+      G+AAIVL
Sbjct: 272 FRDQLESDENRE---RFFAGIPKIKAKDKDKMEIYQLFIQHILFSLKE----NGKAAIVL 324

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
            +   F       + +IR +L+EN ++  +V++P+++F  T     +  +        + 
Sbjct: 325 PTG--FITAQSDIDKKIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK----TNKD 378

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           KV LI+A+ L   I++   ++ +++ ++ ++I + + +++  + FS ++ Y  
Sbjct: 379 KVVLIDASGLGEKIKDGKNQKTVLSCEEEQKICNTFTNKQAVEDFSVVVGYDE 431


>gi|82546467|ref|YP_410414.1| type I restriction enzyme M protein [Shigella boydii Sb227]
 gi|81247878|gb|ABB68586.1| putative type I restriction enzyme M protein [Shigella boydii
           Sb227]
 gi|320185254|gb|EFW60031.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Shigella flexneri CDC 796-83]
 gi|332087071|gb|EGI92205.1| N-6 DNA Methylase family protein [Shigella boydii 3594-74]
          Length = 544

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 150/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  ++       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVD-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +E ++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLETVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|213964709|ref|ZP_03392909.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium amycolatum SK46]
 gi|213952902|gb|EEB64284.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium amycolatum SK46]
          Length = 531

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 120/329 (36%), Gaps = 53/329 (16%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +E    L  +    + ++L         M ++YE+++ +    VS     F T + ++ L
Sbjct: 125 IENPNTLKSVMTLINKLDLRNKDF----MGDLYEYMLSKLS--VSGTNGQFRTSQLIIDL 178

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPI 239
              L+           P     + DP CGT GFL +A   + D  S              
Sbjct: 179 MVELM----------RPSPSERIIDPACGTAGFLVNASEWIRDYHSDELMKKSVRDQFEA 228

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSN 298
               G + +     +    M +           S NI    +L +      + F   L+N
Sbjct: 229 HGLTGYDFDSTMVRISAMNMFMHGFN-------SPNIAYRDSLGTIPDEDKESFDLILAN 281

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF      D+  ++KE  +         L K     +LF+    + L      GGRAA+
Sbjct: 282 PPFAGSV--DESNLDKELTS---------LGKTKKTELLFINRFLSLLR----IGGRAAV 326

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++    LF   +      IR+ L+EN  ++AI+ LP+  F   T ++T +   +   + +
Sbjct: 327 IVPEGVLF--GSTKAHKAIRKELVENQKLDAIIKLPSGAFKPYTGVSTAILCFTRTDS-K 383

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIIND 446
               V      ++    R+   KR  +  
Sbjct: 384 ANDDVWFY---EVLADGRSLDDKRTELLP 409


>gi|167917015|ref|ZP_02504106.1| N-6 DNA methylase [Burkholderia pseudomallei BCC215]
          Length = 485

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 95/464 (20%), Positives = 162/464 (34%), Gaps = 82/464 (17%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+ ++        ++    +   K L +     D E     A  +F NT  +  L  
Sbjct: 33  MFFLKIIDDQDQQLEVMQDGYRSPIPKALQWRTWAADPEGITGDALIAFINTELFPQLKE 92

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L  T    N        S   + +FE          ++   L+ ++    SG++   D  
Sbjct: 93  LPVTGKNANR-------SRVVRGVFE-----DAYNYMKSGQLMRQVVNKISGVDF-NDLA 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             +   +IYE L+    S  +  A ++ TPR V       +           P     L+
Sbjct: 140 ERKHFGDIYEQLLNDLQSAGN--AGEYYTPRAVTAFMVDRI----------DPKPGEILF 187

Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP+ GTGGFLT ++ H+ D        +          E +   H +CV  ML+  +E  
Sbjct: 188 DPSVGTGGFLTCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLPHMLCVTNMLLHGIEDP 247

Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   ++  +TL++   +     R    L+NPPFG K            ++G    F
Sbjct: 248 SF------VRHDNTLARPYISYGQADRVDIILTNPPFGGKE-----------EDGIESNF 290

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L +  + + LFL      L+     GGRA IVL    LF        + ++  LLE 
Sbjct: 291 PAHL-RTKETADLFLALFIRLLKP----GGRAGIVLPDGSLFGEGVK---TRLKAQLLEE 342

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK--- 440
             +  IV LP  +F    +I T L      +  +             +     EG+K   
Sbjct: 343 CNLHTIVRLPNSVFKPYASIGTNLLFFDKGEPTKD---------VWFYEHRVPEGQKAYS 393

Query: 441 -RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTFGYRRI 478
             R I  +  +  ++ +       R+  + +  +       RR 
Sbjct: 394 MTRPIRLEHLQDCVEWWGGAARKGRQETEQAWKVSLADIKARRY 437


>gi|328947486|ref|YP_004364823.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
 gi|328447810|gb|AEB13526.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
          Length = 500

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 160/470 (34%), Gaps = 63/470 (13%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGK-----VILPFTLLRRLECALEPTRSAVREKYLAF 62
            ++L++F+ +  + +         G       I     L+ +  A E       EKY + 
Sbjct: 1   MSNLSSFVKRIRDVMRN--DAGINGDAQRIEQIAWMLFLK-VYDAKEEDWEFEDEKYESI 57

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
               +   ++           +   L    +      L++   S     +       F  
Sbjct: 58  IPEELRWRNWAHTENQG-DGLTGDKLLNFVNNKLFPTLKNLEISPDTPIRQSIVRTTFED 116

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
               ++   LL +I      ++             IYE +++    + +  A +F TPR 
Sbjct: 117 ANNYMKDGVLLRQIVNIIDELDFG-SYEETHAFGEIYETILKEL--QSAGSAGEFYTPRA 173

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHK 235
           V      ++           P +  T+ D  CGTGGFL+  +  + +             
Sbjct: 174 VTQFMAKMI----------KPQIGETMADFACGTGGFLSSWIKELEEVKDAKGSISNEES 223

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRF 292
                  +  E +   + +CV  ML+  L+       S  +  G++L     D      F
Sbjct: 224 EKIYNSIYAVEKKQFPYMLCVTNMLLHGLD-------SPKVYHGNSLIYKLLDYTQKDAF 276

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L NPP+G   + D               F   L + S+ + LF+  +  +L+     
Sbjct: 277 DVILMNPPYGGSEKDDIKQN-----------FPADL-RSSETADLFMAVIMYRLKK---- 320

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411
            GRAA+++    LF     + ++ +++ LL +  +  IV LP  +F   T+I T +   +
Sbjct: 321 NGRAAVIVPDGFLF--GNDNAKNNLKKKLLTDFNLHTIVRLPGSVFSPYTSITTNILFFN 378

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           N   EE  GK           S R    K + +        +  +  R+ 
Sbjct: 379 N---EEPTGKTWFY--RVDIPSDRKHFSKTKPMELKHFDDCIAWWNDRKE 423


>gi|167892258|ref|ZP_02479660.1| N-6 DNA methylase [Burkholderia pseudomallei 7894]
          Length = 472

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 95/464 (20%), Positives = 162/464 (34%), Gaps = 82/464 (17%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+ ++        ++    +   K L +     D E     A  +F NT  +  L  
Sbjct: 20  MFFLKIIDDQDQQLEVMQDGYRSPIPKALQWRTWAADPEGITGDALIAFINTELFPQLKE 79

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L  T    N        S   + +FE          ++   L+ ++    SG++   D  
Sbjct: 80  LPVTGKNANR-------SRVVRGVFE-----DAYNYMKSGQLMRQVVNKISGVDF-NDLA 126

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             +   +IYE L+    S  +  A ++ TPR V       +           P     L+
Sbjct: 127 ERKHFGDIYEQLLNDLQSAGN--AGEYYTPRAVTAFMVDRI----------DPKPGEILF 174

Query: 211 DPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP+ GTGGFLT ++ H+ D        +          E +   H +CV  ML+  +E  
Sbjct: 175 DPSVGTGGFLTCSIRHMRDRYVRTVEDEQALQAGLRAVEKKQLPHMLCVTNMLLHGIEDP 234

Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   ++  +TL++   +     R    L+NPPFG K            ++G    F
Sbjct: 235 SF------VRHDNTLARPYISYGQADRVDIILTNPPFGGKE-----------EDGIESNF 277

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L +  + + LFL      L+     GGRA IVL    LF        + ++  LLE 
Sbjct: 278 PAHL-RTKETADLFLALFIRLLKP----GGRAGIVLPDGSLFGEGVK---TRLKAQLLEE 329

Query: 385 DLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK--- 440
             +  IV LP  +F    +I T L      +  +             +     EG+K   
Sbjct: 330 CNLHTIVRLPNSVFKPYASIGTNLLFFDKGEPTKD---------VWFYEHRVPEGQKAYS 380

Query: 441 -RRIINDDQRRQILDIYV-----SRENGKFSRMLDYRTFGYRRI 478
             R I  +  +  ++ +       R+  + +  +       RR 
Sbjct: 381 MTRPIRLEHLQDCVEWWGGAARKGRQETEQAWKVSLADIKARRY 424


>gi|307312949|ref|ZP_07592577.1| N-6 DNA methylase [Escherichia coli W]
 gi|306907117|gb|EFN37624.1| N-6 DNA methylase [Escherichia coli W]
 gi|315063582|gb|ADT77909.1| N-6 DNA methylase [Escherichia coli W]
 gi|323380337|gb|ADX52605.1| N-6 DNA methylase [Escherichia coli KO11]
          Length = 544

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFTPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|323340689|ref|ZP_08080941.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091812|gb|EFZ34432.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 160/459 (34%), Gaps = 70/459 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLG 92
              L+  +      +    E       S I  E   + + ++  + S       +L    
Sbjct: 34  MLFLKVYDA-----KEQEWEFDDDDYMSIIPEE--CRWSNWAHDDKSGTAMTGDTLLNFV 86

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           +      L++         K       F+     ++   LL+++      ++L  D    
Sbjct: 87  NNTLFPTLKTLPVDAKTPIKKAIVQTTFADANNYMKDGVLLHQVINVIDELDLS-DYEES 145

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                IYE +++    + +  + +F TPR V      ++           P +   + D 
Sbjct: 146 HAFGEIYETILKEL--QSAGSSGEFYTPRAVTDFMAQMI----------RPQIGEKMADF 193

Query: 213 TCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CGTGGF+T  +  + +       +       +G E +   + +C+  ML+  L+     
Sbjct: 194 ACGTGGFITSWLKELHNQTKNVDDEEAYASSIYGIEKKQFPYMLCITNMLLHDLDV---- 249

Query: 271 DLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +  G++L +   D     +F+  L NPP+G   + D               F   
Sbjct: 250 ---PQVYHGNSLLRDVLDYTEDDQFNVILMNPPYGGSEKADVKNH-----------FPAD 295

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           L       + F+  +  +L+      GRAA++L    LF     + +  I++ LL    +
Sbjct: 296 LASSETADL-FMSVIMYRLKQD----GRAAVILPDGFLF--GTDNAKISIKKKLLSEFNL 348

Query: 388 EAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
             I+ +P+ +F   T+I T +         E     ++    D+    ++   K + +  
Sbjct: 349 HTIIRMPSSVFSPYTSITTNILFFDRTHPTEEIWFYRM----DMPEGYKHF-SKTKPMKL 403

Query: 447 DQRRQILDIYVSREN---------GKFSRMLDYRTFGYR 476
           +    +++ + +R+           K++       FGY 
Sbjct: 404 EHFAPVIEWWNNRQEINVDGFDKAKKYTVQQLTEDFGYN 442


>gi|89899860|ref|YP_522331.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
 gi|89344597|gb|ABD68800.1| N-6 DNA methylase [Rhodoferax ferrireducens T118]
          Length = 516

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 113/304 (37%), Gaps = 50/304 (16%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL K+      + +           ++YE+++       +     F TPR ++ L   + 
Sbjct: 129 LLAKVVDLLDHVPME----DRDTKGDLYEYMLSNIA--SAGQNGQFRTPRHIIRLMVEM- 181

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHG 244
                     +P     + DP  GT GFL     ++ +            +     + HG
Sbjct: 182 ---------TAPTAKDVICDPASGTCGFLVATGEYLREKHPEILRNPASREHFHHGMFHG 232

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGK 303
            + +     +    M +  ++       + +I+   +L++D    + R+   L+NPPF  
Sbjct: 233 FDFDNTMLRIGSMNMALHGVD-------NPDIRYQDSLAQDHAGDEGRYSLILANPPFAG 285

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             + +  A +              + K     +LFL      L+     GGRAA+++   
Sbjct: 286 SLDYENTAKDL-----------LAIVKTKKTELLFLALFLRLLKP----GGRAAVIVPDG 330

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
            LF   +     E+RR ++E   ++A+++LP+  F     ++T + + +   +      V
Sbjct: 331 VLF--GSSKAHKELRRMIVEEQKLDAVISLPSGAFKPYAGVSTAILLFTKTNSG-GTDNV 387

Query: 423 QLIN 426
              +
Sbjct: 388 WFYD 391


>gi|331678991|ref|ZP_08379663.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
 gi|331073056|gb|EGI44379.1| type I restriction-modification system, M subunit [Escherichia coli
           H591]
          Length = 544

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|253689249|ref|YP_003018439.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755827|gb|ACT13903.1| N-6 DNA methylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 544

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/454 (16%), Positives = 153/454 (33%), Gaps = 86/454 (18%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      S
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFASEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQS 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 GASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKSLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSHHK------------------------------IPPILVPHGQELEPETHAVCV 256
           + +  S  +                                   + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRDHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSINFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL+ +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDPSLLATV-KTKKTELLFLVRILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA+V LP+ +F     +AT + I +      +   V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVVNLPSGVFKPYAGVATAILIFTKG---GQTDNVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                 +   KR  I D+    ++  +      K
Sbjct: 419 DGY---SLDDKRNQIKDNDLPHLIASWKCYRQSK 449


>gi|328947974|ref|YP_004365311.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
 gi|328448298|gb|AEB14014.1| N-6 DNA methylase [Treponema succinifaciens DSM 2489]
          Length = 508

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/521 (15%), Positives = 180/521 (34%), Gaps = 84/521 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTS---------- 84
           I     ++ L+         +     A    N++    +   G  FY             
Sbjct: 32  ITYLIFIKMLDDNQIKIERKINSLVAAGVEVNLEDYDLIFKDG--FYIDEEDKINCSYAD 89

Query: 85  -EYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDF-DFSSTIAR----LEKAGLLYKI 136
             +S+ +    N +  +NL++ +  F  N     +    F+  + +    +    +L K+
Sbjct: 90  LRWSVFSTWGDNGKKFDNLKNNVFPFIKNLHG--DKVTSFAKYMEKAEFAISNPYILGKM 147

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +  S  +L  +     +M + YE+L+ +  +        F TPR ++ +   +      
Sbjct: 148 IEALSDPDLGFNKTD--IMGDCYEYLLSKMATSG--DNGQFRTPRHIIDMMVEI------ 197

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEP----- 249
                 PG+  T+ DP  GT GFL+++  ++ +  +            H +         
Sbjct: 198 ----AKPGLTDTIIDPAMGTAGFLSESAKYIKEHFAKELTNKTNNQHFHNKMFTGFDTDT 253

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           +   +    M +  +E       +  I+  ++L +D          L+NPPF    +   
Sbjct: 254 DMLRIGCMNMTLHGVE-------NPVIKYNNSLGEDYEEKDSHTLILANPPFSGSLDPST 306

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
            A      +G       G  K         +   +        GGR   ++    L N  
Sbjct: 307 VAKSLNQISG-------GTKKTE-------LLFLSLFLRLLKTGGRCVSIIPVGVLNNTN 352

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428
                +++R+ L+EN  +E ++ +P  +F+  + + T + I +         KV + N  
Sbjct: 353 -DKAYTKLRKELVENQKLEGVIFMPGGVFYPYSGVQTGILIFTKT-NAGGTDKVWMYNME 410

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG------KFSRMLDYRT-------FGY 475
           +      +  +KR  I  +    I++ + +R+        + S ++D +        F +
Sbjct: 411 NDGY---SLDQKRDAIEANDIPDIINRWNNRDKEAERTHYEKSFLVDKQEIVDNDYVFSF 467

Query: 476 RRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSFW 515
            + +     +  +   K   A + E +  + K+    Q   
Sbjct: 468 NKYQKKEVEKKEYRPVKEIFASINELEKQFAKVMKELQGEI 508


>gi|60680961|ref|YP_211105.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC
           9343]
 gi|60492395|emb|CAH07164.1| putative type I RM modification enzyme [Bacteroides fragilis NCTC
           9343]
          Length = 506

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/461 (19%), Positives = 162/461 (35%), Gaps = 71/461 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +    E T       Y A   S        K   +  +   E     L      
Sbjct: 33  MIFLK-VYDTQEETWE-----YKASRESKTYQSIIPKDLRWRNWAVDEKDGEALTGEALL 86

Query: 98  NNLESYI---------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + +   +          + +  AK+I ++  F+     ++   LL ++    + IE   D
Sbjct: 87  SFVNEKLFPALKNLPVDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF-DD 144

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   +IYE +++   S  +  A +F TPR +      +L           P +  T
Sbjct: 145 ADDRHTFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGET 192

Query: 209 LYDPTCGTGGFLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             D T GTGGFLT A+N++      +           GQE +P  + + +  +L+  +E 
Sbjct: 193 FGDFTSGTGGFLTSALNYMGKSVRSAEDGEKLQNAVVGQEWKPLPYLLSITNLLLHDIE- 251

Query: 267 DPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                 + NI    +L     D     +      NPP+G          E   KN    R
Sbjct: 252 ------APNIANCDSLGTNVTDFKETDKVDVIGMNPPYGGS-------TEDSVKNNFPLR 298

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +     + S+ + LF+  +  +L+     GGR  +++    LF       +  ++  LL 
Sbjct: 299 Y-----RSSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENLLR 347

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG---- 438
              +  I+ LP  +F   T+IAT +   +N + E           T  +     EG    
Sbjct: 348 KFNLHTIIRLPGSIFSPYTSIATNILFFNNEEAEGCEEG-FKTKETWFYRLDMPEGYKHF 406

Query: 439 KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473
            K + +  +    I + +  R+       G+ SR+   +  
Sbjct: 407 SKNKPMKVEHTLPIQEWWNDRKEIVSSETGEKSRVFTAQQL 447


>gi|194451585|ref|YP_002048347.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194409889|gb|ACF70108.1| N-6 DNA methylase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
          Length = 544

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|309704073|emb|CBJ03419.1| DNA methylase M [Escherichia coli ETEC H10407]
          Length = 544

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 150/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +     F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFTPEQQELRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLVPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I ++    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKENDLPHLLASWKHY 445


>gi|240125823|ref|ZP_04738709.1| hypothetical protein NgonSK_06352 [Neisseria gonorrhoeae SK-92-679]
 gi|268684422|ref|ZP_06151284.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268624706|gb|EEZ57106.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
          Length = 533

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/501 (17%), Positives = 188/501 (37%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336
                     K+F + +SNPPF   +   +D +E +  +    RF  G+P         M
Sbjct: 282 PAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLESDENHE---RFFAGIPKIKPTKKEKM 338

Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I     ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----VNKDKVVLIDASGLGEKISINDNQKTVLSHEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
              +  ++  + FS ++ Y  
Sbjct: 449 CHTFTHKQAVEDFSVVVGYDE 469


>gi|228288746|ref|YP_002841998.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51]
 gi|228014316|gb|ACP50076.1| N-6 DNA methylase [Sulfolobus islandicus Y.N.15.51]
          Length = 521

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 105/564 (18%), Positives = 185/564 (32%), Gaps = 100/564 (17%)

Query: 15  IWKNAEDLWGDF-KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
           +W  A     D  K T++ +       LR  +   E  +  + ++      S I  E   
Sbjct: 16  LWNIANIFRSDIVKPTEYLEEFSYLFFLRLFDEQ-EIYQENIAKELGEDYKSTIPSE--- 71

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTR-------------NNLESYIASFSDNAKAIFEDFDF 120
               Y F+N +    +   S   +              NL        D  ++I +   F
Sbjct: 72  ----YRFFNWACDPRNYARSKGFKTVTEFLDKMFLDLANLPDTGDPKIDEDRSIIKKI-F 126

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPD-TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           S+   R++    + ++      ++L  D       +   YE L+ + G + +     F T
Sbjct: 127 SNKTRRMQNDNTVIQVIDRLRLLKLPGDEGRKFDALGRGYEFLMYKLGQQGN--YGQFFT 184

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP- 238
           PR++V     ++           P     + DP  GTGGFL  A  +V            
Sbjct: 185 PRNIVSFMVRII----------DPNPGEVILDPAAGTGGFLVKAFEYVKQKIERQITNEA 234

Query: 239 ---------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLF 287
                        +G E  P+   + +  + +         D S N +    LS      
Sbjct: 235 DKEIKIRELKHNLYGIEKAPDVFKLGLMNLRLHG-------DGSSNFENLDALSGSVQGA 287

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             ++     +NPPFG                   G F     +       F+  + + ++
Sbjct: 288 YKEKADVITTNPPFG------------PFSGEPTGNFKYKFKRFETY---FIQAIMDMVK 332

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406
                GGR A V+    LFN         IRR L++   IEA+ +LP  +F   +   T 
Sbjct: 333 P----GGRVATVMLEGLLFNENYEG----IRRDLVDKFKIEAVFSLPAGVFLPYSAAKTD 384

Query: 407 LWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR-QI---------LDI 455
           + +     K E+   KV   N       ++     R+ I D  ++  I         L+I
Sbjct: 385 ILVFRRPNKGEKTTDKVLFFNIESDGYELK---PTRKPIGDCDKKGDIDGCGDLPLALEI 441

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD--KTGLARLEADITWRK-LSPLHQ 512
           Y   + G+    +      Y  + V    +  + LD       RLE +    K L  L +
Sbjct: 442 YQKFKRGE---EIPQTE-QYFVVDVEEIRKHDYRLDINVYRKVRLEEENADPKQLIELME 497

Query: 513 SFWLDILKPMMQQIYPYGWAESFV 536
           +   D +K + +     G  +   
Sbjct: 498 TNLSDAMKRLNELKKILGIGDENE 521


>gi|261392483|emb|CAX50032.1| putative type I restriction-modification system M protein
           [Neisseria meningitidis 8013]
          Length = 533

 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 178/472 (37%), Gaps = 57/472 (12%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE-----SFVKVAGYSFY 81
              +F  +I    L + L    +     VR++        ++++     + +K      Y
Sbjct: 29  DGNEFK-IISQAFLYKFLNDKYDFEVKKVRKENPNDPIEFVNMDIEGKTAVLKPEHSIKY 87

Query: 82  NTSE---YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL----LY 134
            +        + L      +        FS   +   +   F      +   G       
Sbjct: 88  LSERQNGADFAKLFDDTLTDIAACNAELFSVKTEGGAKIVLFERISQYITDEGRRDDFCR 147

Query: 135 KICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            +    +G              + I+E+LI+ + S       ++ TP  V  +   +L+ 
Sbjct: 148 ALISKLAGFSFEAIFAQKFDFFATIFEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVP 207

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
            D      S      +YDP+ G+G  L +  + + +           + + Q++  ++  
Sbjct: 208 EDVRGQIRS----VDVYDPSAGSGTLLMNVAHAIGE--------DKCMIYTQDISQKSSN 255

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKD 308
           +         L  +       N+ QG+T+            K+F + +SNPPF   +   
Sbjct: 256 LLR-----LNLILNNLVHSLNNVVQGNTILSPAHKDASGCLKKFDFIVSNPPFKLDFSDF 310

Query: 309 KDAVEKEHKNGELGRFGPGLP---KISDGSM----LFLMHLANKLELPPNGGGRAAIVLS 361
           +D +E +  +    RF  G+P         M    LF+ H+   L+      G+AAIVL 
Sbjct: 311 RDRLESDENHE---RFFAGIPKIKPTKKEKMEIYQLFIQHILFSLKE----NGKAAIVLP 363

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           +   F       + +IR +L+EN ++  +V++P+++F  T     +  +        + K
Sbjct: 364 TG--FITAKSGIDKKIREYLVENKMLAGVVSMPSNIFATTGTNVSILFIDK----VNKDK 417

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           V LI+A+ L   I     ++ +++ ++ ++I + + +++  + FS ++ Y  
Sbjct: 418 VVLIDASGLGEKISINDNQKTVLSCEEEQKICNTFTNKQAVEDFSVVIGYDE 469


>gi|312965802|ref|ZP_07780028.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75]
 gi|312289045|gb|EFR16939.1| N-6 DNA Methylase family protein [Escherichia coli 2362-75]
          Length = 544

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/450 (15%), Positives = 151/450 (33%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E       + +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSKNFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDIDSTLSAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTDEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    +L  +   
Sbjct: 419 DGY---SLDDKRNPIKDNDLPHLLASWKHY 445


>gi|256810223|ref|YP_003127592.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793423|gb|ACV24092.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 502

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 92/495 (18%), Positives = 174/495 (35%), Gaps = 82/495 (16%)

Query: 11  LANFIWKNAEDLW---GDFKHTDFGKVILPFTLLRRLECAL-----------EPTRSAVR 56
           + + I    + L    G    TD+ + +     L+  E              E     + 
Sbjct: 8   IRSEIKTACDILRTDDGTSGATDYIEQLSWLLFLKVFEGVEEELEEIAILNGEEYIPVID 67

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STNTRNNLESYIASFSDNAKAI 114
           +KY     +  D     K     F +  +     +        + + + +  +  N    
Sbjct: 68  KKYRWSNWAKRDWIGKPKECLKEFVDDVDEEFKKIDKPENAIIHFINNILFPYLRNLSGT 127

Query: 115 FEDFDFSSTI-----ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            E    +         +++    L  + +    I+   +    +V+S IYE ++   GSE
Sbjct: 128 PEREKVAQIFMEISGNKMKSPYNLMDVIEKIDKIDPR-NYEDTQVLSQIYEEILLNMGSE 186

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
               + +F TPR V+     ++           P +   ++DP  G+ GFL +A  ++ D
Sbjct: 187 AG-WSGEFYTPRPVIRFIVKII----------KPKVGEKIFDPFGGSAGFLVEAYKYIKD 235

Query: 230 CGSH------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                      +I      +G E +P  + +    M++  +       L+ N  + ++L 
Sbjct: 236 KLGDKITVQEEEILQRETFYGHEKKPLPYLLGTMNMILHGI-------LTPNYYRRNSLM 288

Query: 284 KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +D+      +++   ++NPPFG K  K                F      +     L L 
Sbjct: 289 EDVHNVPEHEKYDVIMTNPPFGGKENKIVQ-----------NNFPY---PVQATEALALQ 334

Query: 341 HLANKLELPPNGGGRAAIVLS-SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
           ++  KL+     GGRAA++L     +F G       EIRR LLE   + AIV+LP  +F 
Sbjct: 335 YIMRKLKD----GGRAAVILPEGQIMFGGGK---FKEIRRELLEKFNVFAIVSLPQGVFS 387

Query: 399 -FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
                + T +      K+ E   ++        +T       K+  I D      L  + 
Sbjct: 388 QMGAGVKTNIVFF--EKSGEPTKEIWYYELEGKFT-------KKNKIKDKDFEDALKKFE 438

Query: 458 SRENGKFSRMLDYRT 472
            RE  + S ++    
Sbjct: 439 KREISENSWIVSIEE 453


>gi|270296273|ref|ZP_06202473.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273677|gb|EFA19539.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 502

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/454 (19%), Positives = 165/454 (36%), Gaps = 61/454 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN 95
              L+ +    E T     EKY +    ++     +  K  G +    +  S        
Sbjct: 33  MFFLK-VYDTQEETWEWKDEKYKSIIPEDLRWRNWAIDKKDGEALTGEALLSFVNEKLFP 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           T  NL   I + +  AK+I ++  F+     ++   LL ++    + IE   D       
Sbjct: 92  TLKNL--PIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF-DDADDRHTF 147

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE +++   S  +  A +F TPR +      +L           P +  T  D T G
Sbjct: 148 GDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETFGDFTSG 195

Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT A+ ++                  GQE +P  + + +  +L+  +E       +
Sbjct: 196 TGGFLTSALKYMGRNIGSAADGEKLQNAVVGQEWKPLPYLLSITNLLLHDIE-------A 248

Query: 274 KNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            NI    +L     D     +      NPP+G      +D+V+                +
Sbjct: 249 PNITNCDSLGTNVTDFKESDKVDVIGMNPPYGGST---EDSVKSNFPVQY---------R 296

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+     GGR  +++    LF       +  ++  LL    +  I
Sbjct: 297 SSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENLLRKFNLHTI 350

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIIN 445
           + LP  +F   T+IAT +   +N + E           T  +     EG     K + + 
Sbjct: 351 IRLPGSIFSPYTSIATNILFFNNEEAEGCEEG-FKTKETWFYRLDMPEGYKHFSKTKPMK 409

Query: 446 DDQRRQILDIYVSREN------GKFSRMLDYRTF 473
            +    I + +  R+       G+ SR+   +  
Sbjct: 410 VEHTLPIQEWWKDRKEIISDEVGEKSRVFTAQQL 443


>gi|163756220|ref|ZP_02163335.1| type I restriction-modification system, M subunit [Kordia algicida
           OT-1]
 gi|161323832|gb|EDP95166.1| type I restriction-modification system, M subunit [Kordia algicida
           OT-1]
          Length = 476

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/491 (18%), Positives = 159/491 (32%), Gaps = 83/491 (16%)

Query: 38  FTLLRRLECALEP------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              ++      E          +   ++L +     D E         F         TL
Sbjct: 34  MLFMKIFADKEEEWEITIDNYESPIPEHLKWQNWAADDEGLTGDPLMEF--IENELFPTL 91

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
              +            S  AK I     F  T   ++   L  ++    + I+    T  
Sbjct: 92  KELDIT---------ISPQAK-IIRSV-FEDTYNYMKNGTLFRQVINVINEIDF-NSTTE 139

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             + ++IYE +++    + +  + ++ TPR V      ++          +P +  ++ D
Sbjct: 140 RHLFNDIYETILKDL--QSAGSSGEYYTPRAVTQFMVDMV----------NPQLGESVLD 187

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P CGTGGFLT  ++ V +     K          G E +P  H +C   +++   +    
Sbjct: 188 PACGTGGFLTCTIDAVRNQVKTPKDRDVLQKSIRGIEKKPLPHLLCTTNLMLHGFDL--- 244

Query: 270 RDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                 +++ + LSK   D     +    LSNPPFG     ++D  E             
Sbjct: 245 ----PVVRRDNLLSKPYADWGAKDKLDIILSNPPFGG---VEEDGTETNFPKKF------ 291

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
              +  + + LFL  +   L+      GR AIVL    LF        + ++  LL    
Sbjct: 292 ---RTKETADLFLALIIKLLKDK----GRCAIVLPDGTLFGEGMK---TRLKEELLHKCN 341

Query: 387 IEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           +  IV LP  +F   T I T L         +             +        K + IN
Sbjct: 342 LHTIVRLPNGVFNPYTGIKTNLLFFEKGTPTKEVWYY-----EHQYPKGAKSYNKTKPIN 396

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI------------KVLRP--LRMSFILD 491
             +       +  R   KF+  +       R               +  P  L   F   
Sbjct: 397 IKEFEVEKKWWHQRVENKFAWKVSIDEIKKRNYNLDIKNPHQEADTLESPEILLEKFRTT 456

Query: 492 KTGLARLEADI 502
           +T ++ ++ +I
Sbjct: 457 ETKISSIQDEI 467


>gi|317009085|gb|ADU79665.1| type I restriction enzyme M protein [Helicobacter pylori India7]
          Length = 544

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/552 (15%), Positives = 189/552 (34%), Gaps = 84/552 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83
              ++  +I    L + L       +     +      +  D + F K     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCD-----KFEFFFEQEFPNKTIRDYKDFKKEEKEDFFLTLSD 85

Query: 84  -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA- 130
                   +  LS L   +  +N     L++     S N   +F       T   L ++ 
Sbjct: 86  KKLPKLAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESV 145

Query: 131 --------------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173
                          +L    KNF+  +   +          + I+E+LI+ + +     
Sbjct: 146 SQYINEESKRANFTRVLLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLIKDYNNNSGGT 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL+          P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLV--------SVPTQSVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++     +      KN  +G+TL+    +     
Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKDFKG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           +  Y +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  
Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AI++ +   F       E++I R L++  L+  +V +P+ +F  T  
Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGIENKIVRHLVDEKLVYGVVCMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
              +     +KT     +V LI+A+ L         K+  +  +    IL+ + ++ +  
Sbjct: 414 NVSIIFF--KKTPSENEEVILIDASKLGEEYTENKNKKTRLRKNDIDLILETFQNKTQKA 471

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F  ++ +     +   +      +       +++ E +   ++ S    S + +     
Sbjct: 472 DFCALVSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 531

Query: 523 MQQIYPYGWAES 534
            + +   G    
Sbjct: 532 QEILETLGNLNY 543


>gi|116629553|ref|YP_814725.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri ATCC 33323]
 gi|238854088|ref|ZP_04644437.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri 202-4]
 gi|311110804|ref|ZP_07712201.1| type I restriction-modification system, M subunit [Lactobacillus
           gasseri MV-22]
 gi|116095135|gb|ABJ60287.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri ATCC 33323]
 gi|238833295|gb|EEQ25583.1| type I restriction-modification system methyltransferase subunit
           [Lactobacillus gasseri 202-4]
 gi|311065958|gb|EFQ46298.1| type I restriction-modification system, M subunit [Lactobacillus
           gasseri MV-22]
          Length = 504

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/514 (14%), Positives = 164/514 (31%), Gaps = 64/514 (12%)

Query: 35  ILPFTLLRRLECALEPT-RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           I     ++ L+ +     +         +                        +      
Sbjct: 32  ITYLMFIKDLDDSDNRRRKDNAFLGLNDYKSIFDGEVQIDDDVVVDGDELRWSTFKDFAP 91

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDT 149
                 +++ +  F  N K   ED  F+  +      +   GLL K+ ++   I    D 
Sbjct: 92  EKMFTVVQTEVFPFIKNLKN-GEDSSFARHMKDATFLIPTPGLLSKVVESLDEIYRLMDA 150

Query: 150 VPD---RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +  ++YE+L+ +  +        F TPR ++ +   L+          +P   
Sbjct: 151 DVSKRADIRGDVYEYLLGKLSTAG--RNGQFRTPRHIIKMMVELM----------NPQAN 198

Query: 207 RTLYDPTCGTGGFLTDAMNHVA--------DCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            ++ DP  GT GFL +A  ++         D           +  G + +P    +    
Sbjct: 199 DSICDPAAGTAGFLVEAAEYLQTKKSAEIYDSKESKDYFHNQLFTGYDTDPTMLRIGAMN 258

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML   ++       +  I+   +LS       ++   ++NPPF  K   D D+V  +   
Sbjct: 259 MLTHGVD-------NPKIEYQDSLSDQNNDRDKYSLIMANPPF--KGSLDYDSVSDDLLK 309

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                      K         +            GGR A ++    LF   +      IR
Sbjct: 310 ---------TCKTKKTE----LLFLTLFLKMLRVGGRCACIVPDGVLF--GSSKAHKSIR 354

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           + L+E++ +EA++++P+ +F     ++T + I +         KV   + T       + 
Sbjct: 355 KVLVEDNNLEAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTDKVWFYDMTADG---FSL 410

Query: 438 GKKRRIINDDQRRQILDIYV------SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
             KR  + ++    I++ +        R+  + S M+  +        +           
Sbjct: 411 DDKRTPVKENDIPDIIERFKHLDKEIDRKKTEKSFMVGKKDIVANDYDLSINRYKEIEYK 470

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
                  +  I   +      +  L  LK +++ 
Sbjct: 471 PVEYPPTKDIIAEIEKLDKEANDALQELKALLKD 504


>gi|255690851|ref|ZP_05414526.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260623483|gb|EEX46354.1| type I restriction-modification system, M subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 505

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 163/461 (35%), Gaps = 71/461 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  A E T      +      S I  E   +      +         L      
Sbjct: 33  LFFLK-VYDAQEETWEYKSRREKKEFKSIIPEELRWRN-----WAVDNADGEALTGDALL 86

Query: 98  NNLESYI---------ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + + +            +   K I ++  FS     ++   LL ++      I+   D
Sbjct: 87  EFVNARLFPTLKALPVNEDTPRGKTIVKEI-FSDLNQYMKNGILLRQVVNVIDEIDFS-D 144

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   +IYE +++   S  +  A +F TPR +      +L          +P +  +
Sbjct: 145 VEDRHTFGDIYEGILKDLQSAGN--AGEFYTPRALTDFMVEIL----------NPQLGES 192

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             D T GTGGFLT A+NH+                  GQE +P  + + +  +L+  +E 
Sbjct: 193 FGDFTSGTGGFLTSALNHLYKQVKTTNDVKLFQTAVIGQEWKPLPYLLSITNLLVHDIE- 251

Query: 267 DPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                 + NI    +L     D     + +    NPP+G      + +V+    +     
Sbjct: 252 ------APNIIHCDSLGTRVGDFKECDKVNVIAMNPPYGGST---EASVKNNFPSDM--- 299

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                 + S+ + LF++ +  +L+      GRAA+++    LF       +  I+  LL+
Sbjct: 300 ------RSSETADLFMVLIMYRLK----ANGRAAVIVPDGFLF--GVDGAKLAIKTKLLK 347

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG---- 438
           +  +  I+ LP  +F   T+IAT +   +N + E+          T  +     +G    
Sbjct: 348 DFNLHTIIRLPGSIFSPYTSIATNILFFNNERVEDAPDGY-STKETWFYRLDMPDGYKHF 406

Query: 439 KKRRIINDDQRRQILDIYVSREN------GKFSRMLDYRTF 473
            K + +  +  + I + +  R+        + SR    +  
Sbjct: 407 SKTKPMKLEHCQPIKEWWNDRKEIVSQDGNEKSRCFSVQDL 447


>gi|260592886|ref|ZP_05858344.1| type I restriction-modification system, M subunit [Prevotella
           veroralis F0319]
 gi|260535175|gb|EEX17792.1| type I restriction-modification system, M subunit [Prevotella
           veroralis F0319]
          Length = 508

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 159/447 (35%), Gaps = 73/447 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-- 95
              L+ +    E T       Y A            +   +  +   E     +      
Sbjct: 33  MFFLK-VYDTQEETWE-----YKASKERTTFESIIPEKLRWRNWAIDEKDGDAMTGDALL 86

Query: 96  --TRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
               + L   +                K +FED +       ++   LL ++    + IE
Sbjct: 87  SFINDKLFPTLKGLEVTRETPRSKAIVKEVFEDLN-----QYMKNGILLRQVVNVINEIE 141

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              D     +  +IYE +++   S  +  A +F TPR +       L          SP 
Sbjct: 142 F-DDATDRHMFGDIYEGILKDLQSAGN--AGEFYTPRALTDFIIQQL----------SPV 188

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           +  T+ D T GTGGFLT A+N++         +        G E +P  + + +  +L+ 
Sbjct: 189 LGETVGDFTSGTGGFLTSALNYLQKQVKTTDDRRLFQKAVIGHEWKPLPYLLSITNLLLH 248

Query: 263 RLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            +E       S NI+   +L     D   G + +    NPP+G   +    +        
Sbjct: 249 DVE-------SPNIRHCDSLGTKMSDFKEGDKVNVIAMNPPYGGSTDAASKSNFPMEF-- 299

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                     + S+ + LF++ +  +L+      GRAA+++    LF       +  I++
Sbjct: 300 ----------RSSETADLFMVLIMYRLK----ANGRAAVIVPDGFLF--GTDGAKLAIKQ 343

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L +  +  I+ LP  +F   T+IAT +   +N +  E   +    N T  +     EG
Sbjct: 344 KMLRDFNLHTIIRLPGSIFAPYTSIATNILFFNNER-AEGADEGFSTNKTWFYRLDMPEG 402

Query: 439 ----KKRRIINDDQRRQILDIYVSREN 461
                K + +  +  + I D +  R+ 
Sbjct: 403 YKHFSKTKSMRLEHCQPICDWWNDRKE 429


>gi|325685548|gb|EGD27637.1| type I restriction-modification system DNA-methyltransferase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 491

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 140/405 (34%), Gaps = 57/405 (14%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K       F      ++   LL ++       +   D     + ++IYE ++++  S  
Sbjct: 106 IKQAIVKDAFIDANNYMKNGVLLRQVINVIDEQDFT-DPQDRHMFNDIYEGILKQLQSAG 164

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR +       L           P +   + D  CGTGGFL   +N + + 
Sbjct: 165 NS--GEFYTPRALTDFIAETL----------QPKLGEKMADFACGTGGFLISTLNVLKEQ 212

Query: 231 GS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KD 285
                 +        G E + + + + V  +L+  +        + +I  G++L     +
Sbjct: 213 IKSVEDQEKYNNSVFGIEKKGQPYILAVTNLLLHDV-------SNPDIVHGNSLEKKVDE 265

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F   + NPPFG                             S+ + LF+  +  +
Sbjct: 266 YTEKDKFDIIMMNPPFGGSELPVIKQNFPTDLQ------------SSETADLFMALIMYR 313

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404
           L+     GGR  ++L    LF       +  +++ LL +  +  I+ LPT +F   T+IA
Sbjct: 314 LKE----GGRVGLILPDGFLF--GDDGSKLSLKKRLLTDFNLHTIIRLPTSIFAPYTSIA 367

Query: 405 TYLWILSNRKTEERRGKVQLINAT-------------DLWTSIRNEGKKRRIINDDQRRQ 451
           T +      K  E+    +L                 + +  +R    +R+ I D     
Sbjct: 368 TNILFFDKTKPTEKTWFYRLDMPEGYKHFSKTRPMKLEHFDPVREWWNERQEIQDKDGNY 427

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
               Y ++E  +    LD   F  +  +VL P ++          
Sbjct: 428 KSRAYTAKEIEENGYSLDLCGFPTKVEEVLPPEKLMAKYTAEREE 472


>gi|303253792|ref|ZP_07339927.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307248452|ref|ZP_07530472.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302647376|gb|EFL77597.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306855020|gb|EFM87203.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 489

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 159/433 (36%), Gaps = 53/433 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +  A E     + + Y +     +  +++ K         +   L    +     
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91

Query: 99  NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            L++  I++ +   + I     F      ++   LL ++      I             +
Sbjct: 92  ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE++++    + +  A +F TPR V      ++           P +   + D  CGTG
Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+  +                 +G E +   H +C+  +L+  ++       + N
Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250

Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   + L    KD     +F   L NPP+G    +                F   L + S
Sbjct: 251 VHHDNALEKPVKDYTDSDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKVAIKQKLMTEMNLHTVIR 352

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L    D+    +N   K + +  +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKDTWFYRL----DMPEGYKNF-SKTKPMKLEHFNE 407

Query: 452 ILDIYVSRENGKF 464
           +++ + +R+  + 
Sbjct: 408 VMEWWHNRQAIEI 420


>gi|257451972|ref|ZP_05617271.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|317058521|ref|ZP_07923006.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
 gi|313684197|gb|EFS21032.1| type I restriction-modification system DNA methylase [Fusobacterium
           sp. 3_1_5R]
          Length = 256

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 30/265 (11%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPP 300
             GQE+      +    M +  +  +     + +I++G TL   L   ++ F   +SN P
Sbjct: 14  FFGQEINMTNFNLARMNMFLHNVNYN-----NFSIKRGDTLLNPLHNEEKPFDAIVSNRP 68

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           +  KW  D D            RF P   L   S     F+MH  + L       GRAAI
Sbjct: 69  YSIKWVGDADPT-----LINDERFAPAGKLAPKSYADYAFIMHSLSYLSSK----GRAAI 119

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V      +   A   E  IR++L++N+ ++ ++ LP +LFF T+IAT + +++  KTE  
Sbjct: 120 VCFPGIFYRKGA---ERTIRKYLVDNNFVDCVIQLPDNLFFGTSIATCILVMAKNKTE-- 174

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
             +V  I+A+  +    N      I+ +     I++ + +RE  + +R +       + I
Sbjct: 175 -NRVLFIDASKEFKKETN----NNILEEKNINTIIEEFRNREEKEDTREIIDIKVLNQEI 229

Query: 479 --KVLRPLRMSFILDKTGLARLEAD 501
              V +   +   ++   + +LE +
Sbjct: 230 EETVRKIDSLRASIN-EIIKKLEEE 253


>gi|109947644|ref|YP_664872.1| type I restriction enzyme M protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109714865|emb|CAJ99873.1| type I restriction enzyme M protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 543

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 78/485 (16%), Positives = 165/485 (34%), Gaps = 75/485 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77
              ++  +I    L + L    E          T    ++             S  K+  
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDVTEEEKEDFFLTLSDKKLPK 90

Query: 78  YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA------ 130
            S+     +      + N     L++   + S N  A+F       T   L ++      
Sbjct: 91  LSYDELLNHLFDKHFNDNDLHIKLDAIFNNISSNNAALFNTISTDKTTIALFESISQHIN 150

Query: 131 ---------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
                     +L    KNF+      +          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTKVLLDKLKNFNFKNAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P   + +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVNE--------PVKSKKIYDPSAGTGTLLIALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      KN  +G+TL+    +     +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKNAIEGNTLTNPYHSKDYKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   +     +     F  G+P    +D S      LF  H  + L  
Sbjct: 310 VSNPPFKLDFSNEHATISNNKSD-----FSLGVPNIPKNDKSKMPIYTLFFQHCLSMLNP 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
              G    AIV+ +   F        ++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 KSKG----AIVVPTG--FISAKSGVANKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVI 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 +E    +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFQKTPSE---NEVILIDASKLGEEYTENKNKKTRLRTSDMDLILETFKNKTQKSDFCAV 475

Query: 468 LDYRT 472
           + +  
Sbjct: 476 VSFDE 480


>gi|165976839|ref|YP_001652432.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876940|gb|ABY69988.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 489

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 159/433 (36%), Gaps = 53/433 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +  A E     + + Y +     +  +++ K         +   L    +     
Sbjct: 34  LFLK-IYDAKEQEWEQIDDNYHSILPDFLRWQNWAKDNK-DGKAMTGDELLNFVNNELFP 91

Query: 99  NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            L++  I++ +   + I     F      ++   LL ++      I             +
Sbjct: 92  ALKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE++++    + +  A +F TPR V      ++           P +   + D  CGTG
Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAKMI----------KPRLGEKIADFACGTG 197

Query: 218 GFLTDAMNHVADCGSHHKIPP--ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+  +                 +G E +   H +C+  +L+  ++       + N
Sbjct: 198 GFLTSALKELDKQNDSINDKNLLSNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250

Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   + L    KD     +F   L NPP+G    +                F   L + S
Sbjct: 251 VHHDNALEKPVKDYTENDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKMAIKQKLMSEMNLHTVIR 352

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L    D+    +N   K + +  +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPQGYKNF-SKTKPMKLEHFNE 407

Query: 452 ILDIYVSRENGKF 464
           +++ + +R+  + 
Sbjct: 408 VMEWWYNRQAIEI 420


>gi|194098760|ref|YP_002001822.1| hypothetical protein NGK_1197 [Neisseria gonorrhoeae NCCP11945]
 gi|239999053|ref|ZP_04718977.1| hypothetical protein Ngon3_06190 [Neisseria gonorrhoeae 35/02]
 gi|268594897|ref|ZP_06129064.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02]
 gi|193934050|gb|ACF29874.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268548286|gb|EEZ43704.1| N-6 DNA methylase [Neisseria gonorrhoeae 35/02]
 gi|317164346|gb|ADV07887.1| hypothetical protein NGTW08_0919 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 533

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 89/501 (17%), Positives = 188/501 (37%), Gaps = 61/501 (12%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    SL + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQIKSLIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKKIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIDGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAACNADLFSV 118

Query: 110 NAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIR 164
             +   +   F      +   G        +    +G              + I+E+LI+
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFATIFEYLIK 178

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L +  
Sbjct: 179 DYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLLMNVA 234

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + +           + + Q++  ++  +         L  +       N+ QG+T+  
Sbjct: 235 HVIGE--------DKCMIYTQDISQKSSNLLR-----LNLSLNNLVHSLNNVVQGNTILS 281

Query: 285 DLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSM 336
                     K+F + +SNPPF   +   +D +E +  +    RF  G+P         M
Sbjct: 282 PAHKDASGCLKKFDFIVSNPPFKLDFSDFRDRLESDENHE---RFFAGIPKIKPTKKEKM 338

Query: 337 ----LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +V+
Sbjct: 339 EIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAKSGIDKKIREYLVENKMLAGVVS 392

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           +P+++F  T     +  +        + KV LI+A+ L   I     ++ +++ ++ ++I
Sbjct: 393 MPSNIFATTGTNVSILFIDK----VNKDKVVLIDASGLGEKISINDNQKTVLSHEEEQKI 448

Query: 453 LDIYVSRENGK-FSRMLDYRT 472
              +  ++  + FS ++ Y  
Sbjct: 449 CHTFTHKQAVEDFSVVVGYDE 469


>gi|325680372|ref|ZP_08159929.1| hypothetical protein CUS_4297 [Ruminococcus albus 8]
 gi|324107932|gb|EGC02191.1| hypothetical protein CUS_4297 [Ruminococcus albus 8]
          Length = 216

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/195 (23%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 486 MSFILDKTGLARLE--ADITWRKLSPLH-----QSFWLDILKPMMQQIYPYGWAESFVKE 538
           +S + D   +A LE   ++T ++L  L      +  +  I++ +   I    +       
Sbjct: 24  LSSLYDPAKVAELENSEELTGKELKKLENFQNNKPVYDAIIEALNNSIDDKIYLSVKEFM 83

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLES 598
            + +    T      K  +    +     D  A+   D  G  I D    + E V + ES
Sbjct: 84  PVLTKILST--ATTDKKLLDKIADGLSVMDKSAEIQRDKKGNIIYDKETKDTEIVKFDES 141

Query: 599 IQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELK 658
           I+DY  REV PHVPDA         K   + R G EI F R+FY+YQ  +  ++++    
Sbjct: 142 IEDYMAREVLPHVPDAQWFFEEDLSKKSPVIRTGAEIPFTRYFYKYQQPKPSEELEQRFM 201

Query: 659 GVEAQIATLLEEMAT 673
            +E  ++  +  +  
Sbjct: 202 ELEKSVSERIARLFG 216


>gi|254481842|ref|ZP_05095085.1| N-6 DNA Methylase family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214037971|gb|EEB78635.1| N-6 DNA Methylase family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 521

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 87/529 (16%), Positives = 182/529 (34%), Gaps = 99/529 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F +  RL    E +     E+           E          +  S   L  +      
Sbjct: 34  FLMYARLLDMNETSDEKRAERSGKTFNRRFTDEQQHLRWQNFRHIESADELLRVVRDELF 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              ++     S     +F +F   + +  ++K  LL K     + + L           +
Sbjct: 94  PFFKTTSGEGS-----LFAEFMKDAQLM-IQKPALLRKAIDMVNDLPLS----QGDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++     ++           P     + DP CGT 
Sbjct: 144 LYEYLLSKLTTAG--INGQFRTPRHIIRAMVDMM----------DPKATDRICDPACGTA 191

Query: 218 GFLTDAMNHVAD------------------------------CGSHHKIPPILVPHGQEL 247
           GFL+     + +                                 H +     + HG + 
Sbjct: 192 GFLSTTYEFMLEKYSSKDGTIREMVVDENGEEQEQVIYTGDLLADHREHVDRDMFHGFDF 251

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPF 301
           +     +    +++  +          +I    TLS+           + F   L+NPPF
Sbjct: 252 DATMLRIAAMNLVMHGV-------TEPDIHYQDTLSQGFIERFPQSAREGFDLVLANPPF 304

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             K   D++ V+ E              K     +LF+  +   L++    GGRAA+++ 
Sbjct: 305 --KGSLDEEDVDPEILR---------TVKTKKTELLFIALILRMLKV----GGRAAVIVP 349

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
              LF   +     ++R+ ++E++ +EAIV+LP+ +F     ++T + I +      +  
Sbjct: 350 DGVLF--GSSKAHQQLRKSMIEDNQLEAIVSLPSGVFKPYAGVSTAVMIFTKG---GQTD 404

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +V   +         +   KR  ++ +    + D+        +S +      G    + 
Sbjct: 405 RVWFYDLQADG---FSLDDKRTPLSGEGSDDLPDLVEQWAE--YSHL---AAVGKSVEQW 456

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW-----LDILKPMMQ 524
                 +F+++KT +A  + D++ ++   +          L+ILK +M+
Sbjct: 457 NDKTAKAFLVEKTEIASNKYDLSIKRYKEVPYEKEDYEPPLEILKRLME 505


>gi|325287952|ref|YP_004263742.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489]
 gi|324323406|gb|ADY30871.1| N-6 DNA methylase [Cellulophaga lytica DSM 7489]
          Length = 499

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 162/452 (35%), Gaps = 91/452 (20%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST--NT 96
             L+ L    E  ++       AF           K   +  +   +     L     N+
Sbjct: 34  LFLKFLND-YEDNKAD-----EAFLEGTDYNYVLRKDLRWHQWACPKDENGKLDVKRANS 87

Query: 97  RNNLESYIA--------SFSDNAKA----------IFEDFDFSSTIARLEKAGLLYKICK 138
            ++L  Y+         +F                IFE  D      R+     L ++  
Sbjct: 88  GDDLIEYVNNTLFPYLKAFKSTTNDPKTLTYKIGAIFEYLD-----NRIASGHTLREVLD 142

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
               ++    +     +S +YE+L++  GS+    + +F TPR ++              
Sbjct: 143 IIDALDFQ-SSDELFELSQVYENLLKSMGSDGG-NSGEFYTPRAIIKAMVE--------- 191

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-------CGSHHKIPPILVPHGQELEPET 251
                 +  T+YD   G+GGFL +A + +              +        GQE     
Sbjct: 192 -TTDIKVGDTIYDGAVGSGGFLVEAFDFLTAGDKKEKLSAKDWETIQNDTFFGQEKTSLG 250

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKD 308
           + + +  M++  +E       S N+ +G+TL++   D     R    L+NPPFG K +K 
Sbjct: 251 YVMGMMNMILHGIE-------SPNVYKGNTLTQNIRDYQEKDRHDVILANPPFGGKEKKQ 303

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                               P  S+   +LF+ H    L+L     GRAAIV+    LF 
Sbjct: 304 IQQNF---------------PVESNATEILFMQHFMKMLKLE----GRAAIVVPEGVLF- 343

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426
            +  +  +++++ LLEN  +  IV+LP+ +F   + + T +     +        +   +
Sbjct: 344 -QTNNAFTKVKQTLLENFNVHTIVSLPSGVFLPYSGVKTNIIYFDRKGA---TSDIWYYD 399

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            T  +        K + I  +  ++ + ++ +
Sbjct: 400 VTPPYKLT-----KNKPIAYEHIKEFVHLFHN 426


>gi|308184243|ref|YP_003928376.1| type I restriction enzyme M protein [Helicobacter pylori SJM180]
 gi|308060163|gb|ADO02059.1| type I restriction enzyme M protein [Helicobacter pylori SJM180]
          Length = 543

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/544 (15%), Positives = 182/544 (33%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68
              ++  +I    L + L    E               +    E+   F  + ID     
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFLITLIDKRLPK 90

Query: 69  --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121
              +  +       +N ++  L   +      +N      + S +   I  FE      +
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R     +L    KNF   +   +          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL+          P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVSE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++  L    R        +G+TL+    +     +  + 
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHSKDHKGKMDFI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSP 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AIV+ +   F       E++I R L++  L+  +V +P+ +F  T     + 
Sbjct: 365 K----GKGAIVVPTG--FISAKSGVENKIVRHLVDERLVYGVVCMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 + +   +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTKKSDFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    Q+   +IL+
Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEAISQEEFENLMQQYSSELTSLFNESQNLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|198277094|ref|ZP_03209625.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135]
 gi|198269592|gb|EDY93862.1| hypothetical protein BACPLE_03302 [Bacteroides plebeius DSM 17135]
          Length = 502

 Score =  154 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 165/454 (36%), Gaps = 61/454 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--SFVKVAGYSFYNTSEYSLSTLGSTN 95
              L+ +    E T     EKY +    ++     +  K  G +    +  S        
Sbjct: 33  MFFLK-VYDTQEETWEWKDEKYKSIIPEDLRWRNWAIDKKDGKALTGEALLSFVNEKLFP 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           T  NL   I + +  AK+I ++  F+     ++   LL ++    + IE   D       
Sbjct: 92  TLKNL--PIDANTPRAKSIVQE-TFADLNQYMKNGTLLRQVVNIVNEIEF-DDADDRHTF 147

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +IYE +++   S  +  A +F TPR +      +L           P +  T  D T G
Sbjct: 148 GDIYEGILKDLQSAGN--AGEFYTPRALTDFIVMML----------DPKLGETFGDFTSG 195

Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT A+ H+                  GQE +P  + + +  +L+  +E       +
Sbjct: 196 TGGFLTSALKHMGRNIGSAADGEKLQNAVVGQEWKPLPYLLSITNLLLHDIE-------A 248

Query: 274 KNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            NI    +L     D     +      NPP+G      +D+V+                +
Sbjct: 249 PNITNCDSLGTNVTDFKESDKVDVIGMNPPYGGST---EDSVKSNFPVQY---------R 296

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            S+ + LF+  +  +L+     GGR  +++    LF       +  ++  LL    +  I
Sbjct: 297 SSETADLFIALIMYRLK----AGGRCGVIIPDGFLF--GTDGAKLALKENLLRKFNLHTI 350

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIIN 445
           + LP  +F   T+IAT +   +N + E           T  +     EG     K + + 
Sbjct: 351 IRLPGSIFSPYTSIATNILFFNNEEAEGCEEG-FKTKETWFYRLDMPEGYKHFSKTKPMK 409

Query: 446 DDQRRQILDIYVSREN------GKFSRMLDYRTF 473
            +    I + +  R+       G+ SR+   +  
Sbjct: 410 VEHTLPIQEWWKDRKEIISDEVGEKSRVFTAQQL 443


>gi|317012278|gb|ADU82886.1| type I restriction enzyme M protein [Helicobacter pylori
           Lithuania75]
          Length = 543

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 85/549 (15%), Positives = 181/549 (32%), Gaps = 92/549 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  +I    L + L    E        +      +  D +   +     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIRDYKDLNEEEKEDFFLTLND 85

Query: 87  S----------LSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA- 130
                      LS L   +  +N     L++     S N   +F       T   L ++ 
Sbjct: 86  KRLPKLAYDELLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTTSTDKTTIALFESI 145

Query: 131 --------------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173
                          +L    K F+  +   +          + I+E+L++ + +     
Sbjct: 146 SQYINEESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGK 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL++         P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTKSVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++     +      KN  +G+TL     +     
Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKNAIEGNTLINPYHSKDYHG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           +  Y +SNPPF   +  +   + + + +     F  G+P    +D S      LF  H  
Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNNND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AI++ +   F       E++I R L++  L+  +V +P+ +F  T  
Sbjct: 360 NMLSDK----GKGAIIVPTG--FISAKSGIENKIIRHLVDERLVYGVVCMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NG 462
              +       +     +V LI+A+ L         K+  +       IL+ + ++    
Sbjct: 414 NVSIIFFQKTPSA---NEVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTPKA 470

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFW 515
            F  ++ +     +   +              +++ E +            L    QS  
Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530

Query: 516 LDILKPMMQ 524
            +IL+ +  
Sbjct: 531 QEILETLKG 539


>gi|300702437|ref|YP_003744037.1| type I restriction enzyme (hsdm) [Ralstonia solanacearum CFBP2957]
 gi|299070098|emb|CBJ41385.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           CFBP2957]
          Length = 481

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 109/312 (34%), Gaps = 50/312 (16%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L    LL K+ +    I L        V   +Y+ L+ R           F TPR +V 
Sbjct: 119 TLPTPALLDKVVQQLDAIPL----HRRDVRGAVYDALLGRIPQAG--QGGQFHTPRHIVR 172

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPP 238
              AL            P    TL DP  GTGGFL  A  ++                  
Sbjct: 173 FMVAL----------TRPAPSDTLCDPAAGTGGFLAAAGEYLRREHPGLLHDTQQAAHFH 222

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297
             + HG E++     +    +L+  +E         N++    L+  D      +   L+
Sbjct: 223 HGMFHGYEIDRTMLRIGSMNLLLHGVEG-------PNLRDHDALAPTDTNEAGAYSLVLA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           +PPF    +      +  H+            +     +LFL    + L      GGRAA
Sbjct: 276 HPPFTGDVDHGSVDPDLLHRV-----------RTRKAELLFLARCLHLLRP----GGRAA 320

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
           +++    LF   +G     +RR L+EN  +E ++ LP  +F     I T + + +   T 
Sbjct: 321 VIVPDGVLF--GSGIAHRTLRRMLVENHQLEGVIKLPAGVFRPYAGIGTAILLFTRTDTG 378

Query: 417 ERRGKVQLINAT 428
              G V   +  
Sbjct: 379 -GTGHVWFYDLR 389


>gi|329115887|ref|ZP_08244604.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020]
 gi|326906292|gb|EGE53206.1| N-6 DNA Methylase [Streptococcus parauberis NCFD 2020]
          Length = 202

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 29/229 (12%)

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G+G  + +   ++ +          +  HGQ+L   T  +    +++  ++ +      
Sbjct: 1   MGSGSLMLNIRRYLINPN-------QVHYHGQKLNTTTFNLARMNLILHVVDKERM---- 49

Query: 274 KNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            N+  G TL  D  + + + +   + NPP+  KW      +          RFG  L   
Sbjct: 50  -NLNNGDTLDADWPSEEPYQFDSVVMNPPYSAKWSAADKFLSDPR----FERFG-KLAPK 103

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     FL+H    L+      G   IVL    LF G A   E  IR+ LLE   I+A++
Sbjct: 104 SKADFAFLLHGFYHLKES----GTMGIVLPHGVLFRGAA---EGTIRQALLEMGAIDAVI 156

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            LP ++FF T+I + +  L   ++      V  I+A+  WT+++    K
Sbjct: 157 GLPANIFFGTSIPSTVINLKKNRSRR---DVLFIDASQDWTNVKYLDTK 202


>gi|315225317|ref|ZP_07867133.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga ochracea F0287]
 gi|314944726|gb|EFS96759.1| type I restriction-modification system DNA-methyltransferase
           [Capnocytophaga ochracea F0287]
          Length = 499

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 163/464 (35%), Gaps = 80/464 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSN----------IDLESFVKVAGYSFYNTSEY- 86
              L+ +    E       + Y +F               D  +    A   F N + + 
Sbjct: 33  MLFLK-IYDVKEEDWEFNEDSYQSFIPEECRWRSWATDKGDGNALTADALLDFVNNTLFP 91

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           +L +L  T     + S I         +F  F  ++    ++   LL ++      +   
Sbjct: 92  TLKSLEVT-PDTPIHSSI---------VFTTFQDANQY--MKDGVLLRQVVNVIDQLNFS 139

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D         IYE +++    + +  A +F TPR +      ++           P + 
Sbjct: 140 -DYEESHAFGEIYEAILKEM--QSAGSAGEFYTPRALTDFMAEII----------EPQIG 186

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRL 264
             + D  CGTGGF+T  +N +    +  +         +G E +   + +CV  +L+  +
Sbjct: 187 EKMADFACGTGGFITSWLNTLDKKATTAEAKEAWAQSIYGIEKKQFPYMLCVTNLLLHNI 246

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +       +  +   ++L+KD        +F   L NPP+G   + D             
Sbjct: 247 D-------APAVVHDNSLTKDVLNYTDDDKFDVVLMNPPYGGSEKNDIKQHFPSDL---- 295

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     S+ + LF++ +  +L+      GRAA++L    LF   A + +  I+  L
Sbjct: 296 --------SSSETADLFMVLIMYRLKQ----NGRAAVILPDGFLF--GADNAKFAIKERL 341

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG-- 438
           L    +  I+ LP  +F   T+IAT +    N    E   +    + T  +     EG  
Sbjct: 342 LRKFNLHTIIRLPGSVFSPYTSIATNILFFDNV-QAEGAEEGFCTHKTWFYRLDMPEGYK 400

Query: 439 --KKRRIINDDQRRQILDIYVSREN-------GKFSRMLDYRTF 473
              K + +     + I D + +R          + SR+   +  
Sbjct: 401 HFSKTKPMQAVHCQPIKDWWHNRVEIVSEDGKDEKSRVFTAQEL 444


>gi|294668323|ref|ZP_06733426.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309641|gb|EFE50884.1| hypothetical protein NEIELOOT_00235 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 457

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 179/481 (37%), Gaps = 65/481 (13%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    +L + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQHFTEQTKALIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KYLAFGGSNIDLE-----SFVKVAGYSFYNTSE---YSLSTLGSTNTRNNLESYIASFSD 109
           +        ++++     + +K      Y +        + L      +        FS 
Sbjct: 59  EKPDEPIEFVNMDIEGKTAVLKPEHSIKYLSERQNGADFAKLFDDTLTDIAAQNAELFSV 118

Query: 110 NAKA-----IFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
             +      +FE      +    R +    L      FS   +            I+E+L
Sbjct: 119 KTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEVIFAQKFDFFA--TIFEYL 176

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I+ + S       ++ TP  V  +   +L+                +YDP+ G+G  L +
Sbjct: 177 IKDYNSNSGGKYAEYYTPHAVARIMADILVPEGV----RGKIRSVDVYDPSAGSGTLLMN 232

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + + +           + + Q++  ++  +         L  +       N+ QG+T+
Sbjct: 233 VAHAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQGNTI 279

Query: 283 SKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-- 335
                       K+F + +SNPPF   +   +D +E E       RF  G+PKI      
Sbjct: 280 LSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEGEENRE---RFFAGIPKIKAKDTD 336

Query: 336 -----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                 LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++  +
Sbjct: 337 KMEIYQLFIQHILFSLKEK----GKAAIVLPTG--FITAQSGIDKKIREYLVENKMLAGV 390

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           V++P+++F  T     +  +        + KV LI+A+ L   I+ +GK ++  +  Q+ 
Sbjct: 391 VSMPSNIFATTGTNVSILFIDK----ANKDKVVLIDASGLGEKIK-DGKNQKPYSPAQKS 445

Query: 451 Q 451
           +
Sbjct: 446 K 446


>gi|15645091|ref|NP_207261.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
 gi|2313567|gb|AAD07525.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           26695]
          Length = 487

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/485 (14%), Positives = 163/485 (33%), Gaps = 75/485 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE--------------------PTRSAVREKYLAFGGSN 66
              ++  +I    L + L    E                      +              
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNKEEKEEFFITLTDKRLPK 90

Query: 67  IDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121
           +  +  +       +N ++  L   +      +N      + S +   I  FE      +
Sbjct: 91  LAYDDLLNYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDKTTIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R     +L    K F+  +   +          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRVLLDKLKKFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTRNVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      +N  +G+TL+    +     +  Y 
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLRNAIEGNTLTNPYHSKDFKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    ++ S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNNKSKMPIYTLFFQHCLNMLSN 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AI++ +   F       E++I R L++  L+  +V +P+ +F  T     + 
Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIIRHLVDERLVYGVVCMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 + +   +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRPSDIDLILETFQNKTKKSDFCAL 475

Query: 468 LDYRT 472
           + +  
Sbjct: 476 VSFDE 480


>gi|255658632|ref|ZP_05404041.1| type I restriction-modification system, M subunit [Mitsuokella
           multacida DSM 20544]
 gi|260849006|gb|EEX69013.1| type I restriction-modification system, M subunit [Mitsuokella
           multacida DSM 20544]
          Length = 490

 Score =  153 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 130/348 (37%), Gaps = 49/348 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F  T   ++   LL ++      I+L         + +IYE +++    + +  A +F T
Sbjct: 114 FEETNQYMKDGVLLRQVINVIDDIDL-ESYDNMHALGDIYETILKEL--QSAGRAGEFYT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIP 237
           PR V       +           P +   + D  CGTGGFL   +  +         +  
Sbjct: 171 PRAVTDFMADRI----------EPHLGERMADFACGTGGFLVSWLRELEKQIAAPDDRAL 220

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHY 294
                +G E +   + + +  +L+  ++       + +I  G++L     D     +F  
Sbjct: 221 WNHSVYGIEKKQFPYMLAITNLLLHGVD-------NPDIDHGNSLLHDVLDYTEKDKFDK 273

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPP+G   +KD  +   +                S+ + LF+  +  +L+     GG
Sbjct: 274 ILMNPPYGGSEKKDVMSHFPDDLAD------------SETADLFMSVILYRLKQ----GG 317

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           RAA+VL    LF     + +  I++ L+    +  IV LP  +F   T+I T +      
Sbjct: 318 RAAVVLPDGFLF--GTDNTKVNIKKKLMAECDLHTIVRLPGSVFAPYTSITTNILFFDRT 375

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              E   K+      D+    ++   K + +  +    +   +  R+ 
Sbjct: 376 HPTE---KIWFY-RLDMPEGYKHF-SKTKPMRLEHFDPVKAWWDDRQE 418


>gi|119356950|ref|YP_911594.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354299|gb|ABL65170.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 553

 Score =  153 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 81/556 (14%), Positives = 179/556 (32%), Gaps = 96/556 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSF-YNTSEYS--- 87
           I     ++R++   +  + A  E   +        + +    +    SF Y   + +   
Sbjct: 34  ITYLLFMKRMDDQ-DQEKQASAEWAGETYTSKFKGVWIPQEYRGKSNSFNYAIDKSTLRW 92

Query: 88  --LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143
                + +     ++++ +  +  +       F     + +  + K  LL +  K    I
Sbjct: 93  SEFKHMQAEEMLTHVQTKVFPYLKDLNGAESQFSHHMKNAVFIIPKPSLLVEAVKTVDEI 152

Query: 144 ELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
               +   +        +  ++YE L+       +     F TPR ++ +   L+     
Sbjct: 153 FEVMEKDSNEKGQAFQDIQGDVYEFLLSEIA--SAGKNGQFRTPRHIIKMMADLV----- 205

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------ADC 230
                 P +  T+ DP CGTGGFL  A  ++                          A  
Sbjct: 206 -----EPKLGHTIADPACGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSAGL 260

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K        G +++     + +  +++  ++          I    TLSK      
Sbjct: 261 TEQAKNILGRTLFGYDIDSTMVRLALMNLMMHGID-------EPEIDYKDTLSKSFTEES 313

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   ++NPPF               K+     F     K     +LF+ ++   L+   
Sbjct: 314 CYDIIMANPPFTGSI----------DKSDINESFTLSTTKT---ELLFVENIYRLLKK-- 358

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
             GG A +++    LF   +G     +R+ L+E   ++A++ +P+ +F     ++T + +
Sbjct: 359 --GGTACVIVPQGVLF--GSGGAFKALRKLLVERCDLKAVITMPSGVFKPYAGVSTSILL 414

Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +       + T+    +V   +      S+ ++  K+    D     I++ Y  R   +
Sbjct: 415 FTKVWGPLDKVTKPATEQVWFYDMQSDGYSLDDKRSKQDGFGD--LLDIVEKYKQRS-VE 471

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWLDILK 520
                  + F   R ++         L +      E    +     L  L  +   +I +
Sbjct: 472 HDTDRTRKFFFVPRSEIESEGGYDLSLSRYKTDVFEEVVYESPSVILGKLIAAEVGEIDE 531

Query: 521 PMMQQIYPYGWAESFV 536
             +  I      E   
Sbjct: 532 TELANIQSGIVRELLE 547


>gi|99078516|ref|YP_611774.1| N-6 DNA methylase [Ruegeria sp. TM1040]
 gi|99035654|gb|ABF62512.1| Type I restriction enzyme EcoEI M protein [Ruegeria sp. TM1040]
          Length = 524

 Score =  153 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/438 (15%), Positives = 147/438 (33%), Gaps = 75/438 (17%)

Query: 35  ILPFTLLRRLECAL--EPTRSAVR-EKYL-----------AFGGSNIDLESFVKVAGYSF 80
           I     ++RL+     E  ++ +   +                    D E+  +      
Sbjct: 32  ITYLLFIKRLDEIHTREEAKANMLGSEMERRIFPEGTFTYKVSDDPKDDETIERPYD--- 88

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK---IC 137
               +     L +   R  ++          + + E  + ++    ++ A L +    + 
Sbjct: 89  ----DLRWQRLINFENREKMKLMDQHVFPFMRTMAE--EGTAFATHMKDARLGFSSPALL 142

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
                +             ++YE+++ +     +     F TPR ++ L   L+      
Sbjct: 143 DKVMRLLDVIQMDDRDTKGDVYEYMLGKIA--SAGQNGQFRTPRHIIELMVRLM------ 194

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPE 250
               +P    T+ DP  GT GFL  A   + +            +     + HG + +P 
Sbjct: 195 ----APTPKDTICDPAAGTCGFLVTAGEFLRETHPEMLRNPEQRQHFHNSMFHGFDFDPT 250

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDK 309
              +    M++  +E       + ++    +L+++       +   L+NPPF    + D 
Sbjct: 251 MLRIGSMNMVLHGVE-------NADVAYRDSLAEEHGADTGTYSLILANPPFAGSLDYDA 303

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
            A + +            + K     +LFL      +      GGRAA+V+    LF   
Sbjct: 304 TAKDLQ-----------KVVKTKKTELLFLALFLRLMRT----GGRAAVVVPEGVLF--G 346

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428
           +     +IRR ++E+  ++AI+ LP+ +F     ++T + I +          V   +  
Sbjct: 347 SSKAHKDIRRIIVEDQKLDAIIKLPSGVFRPYAGVSTAIMIFTKT-ESGGTDNVWFYDME 405

Query: 429 DLWTSIRNEGKKRRIIND 446
                  +   KR  +  
Sbjct: 406 ADGL---SLDDKRTDLLP 420


>gi|227487583|ref|ZP_03917899.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092401|gb|EEI27713.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 533

 Score =  153 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 136/426 (31%), Gaps = 68/426 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96
              L+ L+          +++   +     D E               +  L  L     
Sbjct: 35  LLFLKHLD--------KQQDEIEKWRLLGQDREDIFPAGAIEAGVPLRWRDLLALKDKKR 86

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVPD 152
               E+++  F    +       F + + R    ++    L  + +    +E        
Sbjct: 87  VEAFENHVFPFLTAQEDYPYKSPFGNFLKRAQFQIDNPATLASVMQRIDDLEFTNK---- 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ ++YE+++ +  ++       F TP  ++ L   L+           P     + DP
Sbjct: 143 DMLGDLYEYVLSKLATQG--TNGQFRTPTHIIDLMVKLI----------QPKPTEKIIDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             GT GFL  A   + D                     G + +     +    + +   +
Sbjct: 191 AAGTAGFLVGANEWIKDHHKSDLRDERIRNKFKEEGLTGHDSDATMVRLAAMNLFLHGFD 250

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  + NI    +L   +      F   L+NPPF      D +++++E       + 
Sbjct: 251 -------NPNISYQDSLQPLENTPTGVFDVVLANPPFSGSV--DANSIDQELTTLFTTKK 301

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                      +LF+      L      GGRAA+++    LF+         +R+ L+++
Sbjct: 302 T---------ELLFVARFLTLLR----LGGRAAVIVPEGVLFSS--TKAHKALRKELVDH 346

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             ++A++ LP+  F  +   ++T +   +    +     V             +   KR 
Sbjct: 347 QSLDAVIKLPSGTFKPYS-GVSTAILCFTRA-DDAATDSVWFYEVRADGY---SLDDKRT 401

Query: 443 IINDDQ 448
            + D+ 
Sbjct: 402 PLLDEN 407


>gi|307250669|ref|ZP_07532606.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306857277|gb|EFM89396.1| Type I restriction-modification system M subunit [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 489

 Score =  153 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/433 (17%), Positives = 163/433 (37%), Gaps = 53/433 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+ +  A E     + + Y +   + +  +++ K         +   L    + +   
Sbjct: 34  LFLK-IYDAKEQEWELINDDYQSILPNFLRWQNWAKDNK-DGKAMTGDELLNFVNNDLFP 91

Query: 99  NLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            L++  I++ +   + I     F      ++   LL ++      I             +
Sbjct: 92  TLKNLPISAETPMNQKIIRAA-FEDNNNYMKNGILLRQVINIIDEINF-EQYQERHAFGD 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE++++    + +  A +F TPR V      ++          +P +   + D  CGTG
Sbjct: 150 IYENILK--SLQSAGNAGEFYTPRAVTDFMAQMI----------APKLGERIADFACGTG 197

Query: 218 GFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT A+  +         +       +G E +   H +C+  +L+  ++       + N
Sbjct: 198 GFLTSALKVLEKQIQSVSDRTLFNNSVYGIEKKALPHLLCITNLLLHDID-------NPN 250

Query: 276 IQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   + L    KD     +F   L NPP+G    +                F   L + S
Sbjct: 251 VHHDNALEKPVKDYTDSDKFDVILMNPPYGGSEIEQIKTN-----------FPSAL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR AIVL    LF     + +  I++ L+    +  ++ 
Sbjct: 299 ETADLFMSVIMYRLKK----NGRVAIVLPDGFLF--GTDNAKVAIKQKLMTEMNLHTVIR 352

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T+I T +    N +  +     +L    D+    +N   K + +  +   +
Sbjct: 353 LPHSVFAPYTSITTNILFFDNTEPTKETWFYRL----DMPEGYKNF-SKTKPMKLEHFNE 407

Query: 452 ILDIYVSRENGKF 464
           +++ + +R+  + 
Sbjct: 408 VMEWWHNRQAIEI 420


>gi|308061791|gb|ADO03679.1| type I restriction enzyme M protein [Helicobacter pylori Cuz20]
          Length = 543

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 84/544 (15%), Positives = 183/544 (33%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68
              ++  +I    L + L    E               +    E+   F  + ID     
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFMTLIDKRLPK 90

Query: 69  --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDFD--FS 121
              +  +       +N ++  L   +      +N      + S +   I  FE      +
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNTELFNTKSTDETNIALFESISQCIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R     +L    KNF   +   +          + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIARIIAKLLINE--------PTKSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    +     +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKDLKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AI++ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                K      +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 VSFNEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|188527247|ref|YP_001909934.1| type I restriction enzyme M protein [Helicobacter pylori Shi470]
 gi|188143487|gb|ACD47904.1| type I restriction enzyme M protein [Helicobacter pylori Shi470]
          Length = 543

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 85/544 (15%), Positives = 182/544 (33%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68
              ++  +I    L + L    E               +    E+   F  + ID     
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFLITLIDKRLPK 90

Query: 69  --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121
              +  +       +N ++  L   +      +N      + S +   I  FE      +
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R     +L    KNF   +   +          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    +     +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKDLKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                K      +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|160914344|ref|ZP_02076563.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991]
 gi|158433817|gb|EDP12106.1| hypothetical protein EUBDOL_00352 [Eubacterium dolichum DSM 3991]
          Length = 494

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/544 (15%), Positives = 173/544 (31%), Gaps = 63/544 (11%)

Query: 8   AASLANFIWKNAEDLWGDFKHTDFGK-----VILPFTLLRRLECALEPTRSAVREKYLAF 62
            ++L+ F+    + +         G       I     L+ +  A E       + Y++ 
Sbjct: 1   MSNLSGFVKSIRDIMRN--DAGINGDAQRIEQIAWMLFLK-VYDAKEQDWEMDEDDYISI 57

Query: 63  GGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
                   ++    G     T         +       NLE  +   +   K       F
Sbjct: 58  IPDQFKWSNWAHDDGSGKAITGDELLDFVNIELFPALKNLE--VNKETP-IKKSIVKTTF 114

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                 ++   LL ++      ++L  D         IYE +++    + +  + +F TP
Sbjct: 115 EDANNYMKDGVLLRQVINVIDKLDLG-DYEESHAFGEIYESILKEL--QSAGSSGEFYTP 171

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--CGSHHKIPP 238
           R V      ++           P +  T+ D  CGTGGFLT  +  + +    +  +   
Sbjct: 172 RAVTDFMAKMI----------EPKIGETMADFACGTGGFLTSWIKELENKIQTNEDRRKF 221

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYC 295
               +G E +   + +C+  ML+  ++          I+  ++L     D     +F   
Sbjct: 222 DSSIYGIEKKQFPYMLCITNMLLHGIDI-------PRIEHDNSLLYDVLDYTDDDKFDVI 274

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L NPP+G   + D                       S+ + LF+  +  +L+      GR
Sbjct: 275 LMNPPYGGNEKSDVKNHFPSDLA------------SSETADLFMSVIMYRLKE----NGR 318

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414
            A++L    LF     + +  I++ LL    +  IV +P  +F   T+I T +       
Sbjct: 319 VAVILPDGFLF--GTDNAKVSIKKKLLNEFNLHTIVRMPHSVFSPYTSITTNILFFDKTG 376

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             +     +L    D+    +N   K + +  +     +  + +RE        D     
Sbjct: 377 KTKETWFYRL----DMPEGYKNF-SKTKPMKLEHFDPAIKWWNNREEISI-DGFDKAKKY 430

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            +     +   +           +       K     +      +  ++ QI      + 
Sbjct: 431 SKAELEEKNYNLDLCGYPHEEEEILPPKDLIKEYQEKRKSLNADIDRILGQISEILGFDF 490

Query: 535 FVKE 538
             +E
Sbjct: 491 EEEE 494


>gi|289644883|ref|ZP_06476931.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata]
 gi|289505312|gb|EFD26363.1| N-6 DNA methylase [Frankia symbiont of Datisca glomerata]
          Length = 564

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/301 (21%), Positives = 112/301 (37%), Gaps = 35/301 (11%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +  +       +F TP  V  +   LL           P     + DP CG+G  
Sbjct: 218 QFLLEQLAAVQGRRGTEFFTPPSVTRVIMELL----------DPRPDARICDPCCGSGEL 267

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L  A          H      V HG  L+ ++  +      +  L +D      + ++  
Sbjct: 268 LAAAGTRARS--RRHSTESAQVLHGYALDQQSWRLAQLTAALHGLPADLGEYPVEPLRLH 325

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                      R+     NPPF      D D   + H       +  G P   + +  +L
Sbjct: 326 H------QRTTRYDVVAMNPPFNMSGWSDGDPAHRPH-------WRYGPPPRHNANFAWL 372

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            + A  L    + GG A +++  S          E  IR  ++E+ ++E +VALP+ LF 
Sbjct: 373 QYAALLL----DDGGSAVVIMPHSAATTDNP--AEVTIRTNMIEDGVMECVVALPSRLFR 426

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+    LW+L    + + R  V  ++AT + T I  +    RI+ DD   +I   Y   
Sbjct: 427 ETSAPATLWVLRRP-SRDSRRDVLFVDATAVGTVIDRD---YRILTDDDVARITGAYQDW 482

Query: 460 E 460
           +
Sbjct: 483 K 483


>gi|225022499|ref|ZP_03711691.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944738|gb|EEG25947.1| hypothetical protein CORMATOL_02539 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 500

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 138/428 (32%), Gaps = 73/428 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL----GS 93
              +R+L+      R    ++    G    D E              +     L      
Sbjct: 10  LLFIRQLD-----ERQNELDQKKLLGVPVHDEEIIFTTEQ------EDLRWKNLMQIGDP 58

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           T     + + +  F            F      +     L+K  +  + +++    +   
Sbjct: 59  TELHETMATRVFPFLKTMGTGTLAVLFRDASFGISSPSTLWKTMELINDLDIKNRDIT-- 116

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              ++YE+++ +  +        F TP+ ++ L   L+          +P +   + DP 
Sbjct: 117 --GDLYEYMLSKLATSG--TNGQFRTPQHIIDLLVELM----------APKLGERIIDPA 162

Query: 214 CGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           CGT GFL +A   +              +        G + +     +      +   E 
Sbjct: 163 CGTAGFLINASEWMKRTYREDLYNTNERERFYRDTFTGYDFDRSMVRIAAMNSYMHGFE- 221

Query: 267 DPRRDLSKNIQQGSTLSK----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                   NI    +L +        G  +   L+NPPF    + ++             
Sbjct: 222 ------KPNISYRDSLGEFPEMSGGGGDLYDVILANPPFSGSLDAERVDPVIR------- 268

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                L       +LFL      L++    GGRAA+++    LF   +      +R+ L+
Sbjct: 269 ----KLANTKKTELLFLARFLTLLKV----GGRAAVIVPEGVLF--GSTKAHKVLRKELV 318

Query: 383 ENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           EN  ++A++ LP+ +F  +   ++T +   +   +     +V   +   +    R+   K
Sbjct: 319 ENQKLDAVIKLPSGVFKPYS-GVSTAVLCFTKTDSG-GTDEVWFYD---MLADGRSLDDK 373

Query: 441 RRIINDDQ 448
           R  +  + 
Sbjct: 374 RTPLLPEN 381


>gi|257058611|ref|YP_003136499.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
 gi|256588777|gb|ACU99663.1| type III restriction protein res subunit [Cyanothece sp. PCC 8802]
          Length = 1005

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/444 (15%), Positives = 148/444 (33%), Gaps = 77/444 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D     V  ++YE+L+ +           F TPR ++ L   ++           P    
Sbjct: 571 DEQNQDVKGDLYEYLLGKLNISG--RNGQFRTPRHIIRLMVEMV----------DPKPNE 618

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHK------------------------IPPILVPH 243
            + D   GT GFL ++  ++ +  +  +                               +
Sbjct: 619 RIGDLAAGTCGFLVNSYQYILEKFTSPEILLDEMGNKHPIGDLLTPEESEFLEKEAFTAY 678

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
             +       +    +++  ++               TLSK+    K     L NPPF  
Sbjct: 679 DNDSGMTMLRIGSMNLMLHGIKYPRFFYQ-------DTLSKEFKDEKSLDVALMNPPF-- 729

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K + D+  +                 K     +LFL  +   L      GGR  +++   
Sbjct: 730 KGKMDEKDIN-----------PYLPTKCKKTELLFLYQILRVL----EMGGRCGVIVPDG 774

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
            LF   +     +IR+ L+E + ++ +V++P+ +F     ++T + + +         ++
Sbjct: 775 VLF--GSSKQHQDIRQKLIEENRLDGVVSMPSGVFKPYAGVSTAILLFTKG---ATTDRI 829

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
              +   +     +   KR+ I ++    ILD + +R +  FS + +           L+
Sbjct: 830 WFYD---MEHDGFSLDDKRQPIEENDIPDILDCWRNRFDNGFSALRESMKAELSAK--LQ 884

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWL----DILKPMMQQIYPY-GWAESFVK 537
           PL+   +  +  + RL  +              L    + LK + ++I P  G      +
Sbjct: 885 PLKEKRLQLQEEIHRLRFEDAIASEDEETPRQVLESAEETLKVLEEEIKPLQGQINRLSR 944

Query: 538 ESIKSNE-AKTLKVKASKSFIVAF 560
           +     +  K  K   S S     
Sbjct: 945 QFWVDKQVVKGNKYDLSASRYRHI 968


>gi|297379660|gb|ADI34547.1| type I restriction enzyme M protein [Helicobacter pylori v225d]
          Length = 543

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/544 (14%), Positives = 178/544 (32%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +   + Y  F     +    + +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKNFNEEEKEDFFIILIDKRLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFE-------DFDFSSTI----- 124
              +  LS L   +  +N     L+      S N   +F        +     +I     
Sbjct: 91  LAHDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 125 ARLEKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPSSIARIIAKLLVNE--------PTKSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    + +   +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLND 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
              G    AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 KCKG----AIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                K      +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FF---KKMPSVNEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
             +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 ASFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFEDLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|94995116|ref|YP_603214.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
 gi|94548624|gb|ABF38670.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
          Length = 267

 Score =  152 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 30/223 (13%)

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDA 311
           +    M++  +        ++++    TL  D  T +  ++   L NPP+  KW      
Sbjct: 1   MARMNMMLHGV-----AIENQHLSNADTLDADWPTDEPTNFDGVLMNPPYSLKWSATAGF 55

Query: 312 VEKEHKNGELGRFG-PG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           +          RF   G L   S     FL+H    L+      G  AIVL    LF G 
Sbjct: 56  LT-------DPRFSSYGVLAPKSKADFAFLLHGFYHLKNT----GTMAIVLPHGVLFRGA 104

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           A   E +IR+ LLE   I+ I+ LP+++F+ T+I T + IL   +T +    V  I+A+ 
Sbjct: 105 A---EGKIRQKLLEQGAIDTIIGLPSNIFYNTSIPTTIIILKKNRTNK---DVFFIDASK 158

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            +      GK +  + D   ++ILD Y SR+N      L    
Sbjct: 159 EFDK----GKNQNTMTDSHIKKILDAYKSRDNSDKFSYLASFD 197


>gi|315222592|ref|ZP_07864481.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211]
 gi|315188278|gb|EFU22004.1| ADP-ribosylglycohydrolase [Streptococcus anginosus F0211]
          Length = 548

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 74/222 (33%), Gaps = 23/222 (10%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
                ++  L   +++    L G     +F   + P    +R+    +       E    
Sbjct: 309 ENEETTSQKLFAHLYEACNILRGPINQDEFKDYVTPILFFKRISDVYDEETQEALEL--- 365

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDN----AKAIF 115
              S  D E       +SF          L +   +    +   +             +F
Sbjct: 366 ---SGGDEEFAAFDENHSFVIPEGCHWKDLRNASQDVGKIIVKAMNGIERANPGTLSGVF 422

Query: 116 EDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             FD  +   + +     L  + ++ S +++        VM + YE+LI++F     + A
Sbjct: 423 SSFDDVTWTDKTKLTDERLKDLIEHMSSLKVGNKNYSADVMGDAYEYLIKKFADLSKKNA 482

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++ TPR +V L   L+           P    T+YDP CG 
Sbjct: 483 GEYYTPRTIVKLMVMLM----------DPKPGDTVYDPACGF 514


>gi|330978665|gb|EGH77946.1| N-6 DNA methylase [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 328

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 132/371 (35%), Gaps = 62/371 (16%)

Query: 31  FGKVI--LP-FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
           +G  +  L     L+     L    +              D        G         +
Sbjct: 8   YGDYLEQLTYLLFLK-----LAHEYAQEPYSRDTHIPKGYDWAGLTSKVGEPLEAHYLAT 62

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L  LG               S    AIF  F   + I    K   L ++    S I L  
Sbjct: 63  LHKLGQQ-------------SGMLGAIF--FKAQNKIQDPAKLSRLVQLIDAESWISLGA 107

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D        ++YE L+++   +   GA  + TPR ++    A +           P  ++
Sbjct: 108 D-----TKGDLYEGLLQKNAEDTKSGAGQYFTPRALIETIVACV----------RPEPMK 152

Query: 208 TLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
            + DP CGTGGF   A N +         +  +       HG E+   T  +C+  + + 
Sbjct: 153 IIADPACGTGGFFLGAYNWLTRPGATLNKAQKEFLRDKTFHGNEIVSNTRRMCLMNLFLH 212

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK----WEKDKDAVEKEHKN 318
            +      D    + +   L  +     +  Y L+NPPFGKK       ++   +KE   
Sbjct: 213 NV---GELDGEPLVARSDALITE--PKLKVDYVLANPPFGKKSSMTISNEEGDEDKEALT 267

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            E   F       S+  + FL H+ + L++     G+AA+VL  + LF G AG    +IR
Sbjct: 268 YERQDFWETT---SNKQLNFLQHIVSMLKVD----GKAAVVLPDNVLFEGGAG---EKIR 317

Query: 379 RWLLENDLIEA 389
           R LL+N  +  
Sbjct: 318 RKLLDNCDVHT 328


>gi|322379880|ref|ZP_08054167.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5]
 gi|321147715|gb|EFX42328.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS5]
          Length = 303

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 100/299 (33%), Gaps = 45/299 (15%)

Query: 3   EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVR 56
             T +   L   IW  A+ L G     DF + +L   L R L   L         +    
Sbjct: 11  NSTANRNHLFKAIWNIADKLRGAVDGWDFKQFVLGMILYRYLSENLANYINETEQKRDAS 70

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST--------LGSTNTRNNLESY---IA 105
             Y        +L   + +    FY                 L +      L      I 
Sbjct: 71  FNYAKLKDEKANLAKEMLLEEKGFYIPPSGLFENVIENLGPLLKAGKLNTTLNDIFKNIE 130

Query: 106 SFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153
           + S      +N K +F D D +S   +L      K   + ++ +  + +++         
Sbjct: 131 ASSLQSEAQENFKGLFADLDMNS--DKLGNGVKSKNENIARLLEGVASMQISHYQKNGID 188

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V  + YE L+  + S   +   +F TP +V  L T L++    ++ K        +YDP 
Sbjct: 189 VFGDAYEFLMGMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKSINK--------VYDPC 240

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+G  L      +                GQE+   T+ +C A ML+  ++ D     
Sbjct: 241 CGSGSLLLQFAKILGVENIKQG------FFGQEINQTTYNLCRANMLLHNVDYDKFHIN 293


>gi|332829957|gb|EGK02585.1| hypothetical protein HMPREF9455_00835 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 478

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 174/495 (35%), Gaps = 58/495 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK-VAGYSFYNTSEYSLSTLGSTNT 96
              L+ ++      +    E       S I  +   +  A  S   T E  L  + ST+ 
Sbjct: 34  MLFLKIIDD-----KDKELEILKDDYISVIPEKFQWRNWAANSEGITGEELLGFIDSTSH 88

Query: 97  RN-NLESYIASFSDNA---KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
            +  L + +   S      +A      F  +   ++    + K+    + I+ +      
Sbjct: 89  HDLGLFATLRCLSSKTNPKRAAIVKEVFDGSNNYMKSGFEMRKVINKLNEIDFNRSD-DK 147

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  +IYE +++      ++   ++ TPR +  L T +            P +   + DP
Sbjct: 148 HIFGDIYESILQELRDAGNK--GEYYTPRAITQLMTQM----------TDPKLGEKILDP 195

Query: 213 TCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
             GTGGFLT A+ H  D       ++        G EL+P  + + +  +++  ++    
Sbjct: 196 AAGTGGFLTAAIEHKRDHYVKTVDNEATLQSTITGWELKPVAYVLGLTNLILHGIDIPDY 255

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + +    ++ +++ K      +    L+NPPFG       D VE         R      
Sbjct: 256 QYIDSLKKEYNSIDK----KDQVDVILANPPFGASIA---DGVETNFPAMYRCRESAD-- 306

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                  LF++ +   L+      GRAAIVL    +      S    IR  LL +  +  
Sbjct: 307 -------LFVILMLQMLKPT----GRAAIVLPDGSITGEGVKS---RIREKLLTDCNLHT 352

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV LP   FF   ++T L         +                 +    K + I  ++ 
Sbjct: 353 IVRLPQSTFFPATVSTNLLFFEKGAPTKEIWYY-----EHRLPEGQKSYSKTKPIKFEEF 407

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           + +++ + +R   + +  +  +      + +    + S  + +         I   K S 
Sbjct: 408 KPLIEWWNNRVENEVAWKVKVKDLNNWDLDI----KNSNTVTEDITLSTTDAILKLKESI 463

Query: 510 LHQSFWLDILKPMMQ 524
              +  +D L+ +++
Sbjct: 464 NKSNSIIDELENLLK 478


>gi|290474453|ref|YP_003467333.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii
           SS-2004]
 gi|289173766|emb|CBJ80546.1| putative type I restriction enzyme M protein [Xenorhabdus bovienii
           SS-2004]
          Length = 534

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 94/549 (17%), Positives = 170/549 (30%), Gaps = 112/549 (20%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY-----SFYNTSEYSLSTLG 92
               R L+      +  + E+     G + D        G      +F N S   L    
Sbjct: 35  LMFARMLD-----MQEDMAERKANRTGKDFDRLFPNTPEGQLLRWKNFKNLSGKELHKHL 89

Query: 93  STNTRNNLESYIASFSDN---------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
             N      + +   SD          A             A LE       +      +
Sbjct: 90  KQNVFPYF-AKLGKKSDEQDGLGNDGSAIEALGHIGEYMQDADLEIKNE-SVLVSAVEMV 147

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +  P      V  +IYE+L+ +  +        F TPR ++     L+          +P
Sbjct: 148 DELP-LTQSDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMIELI----------NP 194

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSHHKIPPILV 241
               T+ DP CGT GFLT  M ++                           +       +
Sbjct: 195 QPTDTVCDPACGTAGFLTRIMEYLNRVHSSEFGILEDDDGNKHYTGDLLEPYRDHINKKM 254

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYC 295
             G + +     V    M +  +          NI    +LSK             F   
Sbjct: 255 FWGFDFDTTMLRVSSMNMALHGVNG-------ANILYQDSLSKSIKENFPQQEENFFDVI 307

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L+NPPF             E           GL K     +LF+ H+   L+     GGR
Sbjct: 308 LANPPF--------KGSLDETNTNPD---VLGLVKTKKTELLFVAHILRALK----LGGR 352

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414
           AA+++    LF   +     ++R+ L+EN+ +E IV+LP+ +F   T ++T + + +   
Sbjct: 353 AAVIVPDGVLF--GSSKAHQQLRQELIENNQLEGIVSLPSGVFKPYTGVSTAILMFTKGG 410

Query: 415 TEERRGKVQLINA-TDLWTSIRNE----GKKRRIINDDQ---------------RRQILD 454
           + E   +V   +  TD ++         G+    + +                  + I  
Sbjct: 411 STE---RVWFYDLQTDSYSLDDKRTPLKGEGSNDLPEAIAKWKQYIALVERNALAKDINK 467

Query: 455 IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            +  +    F  ++D +     +  +        + ++      +  +   K        
Sbjct: 468 AFGDKTQKAF--VVDAKDIVDNKFDLSINRYKEVVYEEEAFEDPKTILNKLKTLESEIMA 525

Query: 515 WLDILKPMM 523
            LD L+ M+
Sbjct: 526 DLDALEGML 534


>gi|332673287|gb|AEE70104.1| type I restriction enzyme M protein [Helicobacter pylori 83]
          Length = 487

 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 167/490 (34%), Gaps = 85/490 (17%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83
              ++  +I    L + L    E        +      +  D + F +     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNEEEKEDFFITLID 85

Query: 84  -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127
                   +  LS L   +  +N     L++     S N   +F       T   L    
Sbjct: 86  KRLPKLAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNATSTDETTIALFESI 145

Query: 128 --------EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEG 173
                   ++A     +       +         +       + I+E+L++ + +   + 
Sbjct: 146 SQYINEESKRANFTRALLNKLRNFDFKQAFLNLQNQQGYDFFAPIFEYLLKSYNNASGDT 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL++         P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLVNE--------PTQNVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++     +      K   +G+TL+    + +   
Sbjct: 252 --GTNSCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           R  Y +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  
Sbjct: 305 RMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T  
Sbjct: 360 NMLNNK----GKGAIVVPTG--FISAKSGIENKIVRHLVDKRLVYGVICMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
              +      K      +V LI+A+ L         K+  +       IL+ + ++ +  
Sbjct: 414 NVSVIFF---KKTPSVNEVVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKA 470

Query: 463 KFSRMLDYRT 472
            F  ++ +  
Sbjct: 471 DFCTLVSFDE 480


>gi|58616450|ref|YP_195579.1| Type I restriction-modification system (specificity subunit)
           [Azoarcus sp. EbN1]
 gi|56315912|emb|CAI10555.1| Type I restriction-modification system (specificity subunit)
           [Aromatoleum aromaticum EbN1]
          Length = 540

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 167/508 (32%), Gaps = 112/508 (22%)

Query: 22  LWGDFKHTDFGKVILP--------------FTLLRRLE---CALEPTRSAVREK-YLAFG 63
           +    +       +                F     L     A    R+ V +  Y +  
Sbjct: 7   MRRSIE--QIRDYLFGGGYPDPVSNAEQLSFLFFFYLVEGIDAENEARAKVLKTPYESLF 64

Query: 64  GSNIDLESFVKV--AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF--- 118
            S+  L + +     G +      +  S   +  +   L  ++         +F  F   
Sbjct: 65  KSSWTLRNPLNALAKGETTIPRDRFRWSVWATALSGEPLVRFLRD------EVFAFFTEM 118

Query: 119 ------DFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
                 +F       +++  +L ++     G+  H D        +++EH++R+      
Sbjct: 119 AGNGAVNFMHGARLVIDEPTVLNQVVTLVDGL--HLDRADADTKGDLFEHVLRQIKQAG- 175

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--- 228
                F TPR ++     ++           P +  T+YDP  GT GFL  A NH+    
Sbjct: 176 -ELGQFRTPRHIIRAIVEII----------DPKIGETIYDPAAGTAGFLVAAYNHIRLAN 224

Query: 229 ---------DCGSHHKIP--------------PILVPHGQELEPETHAVCVAGMLIRRLE 265
                    +     +                      G +++P+   +    + +R L 
Sbjct: 225 SSPAGIQSVELDGKMQTRGLGDKLSTAQLSALQSKTFFGNDVDPKMVRLATMNLTLRGLP 284

Query: 266 S------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +      +       N ++           + +H  L+NPPF  +   DKD +  + K G
Sbjct: 285 NVHILLRNVLTTTLDNERKADLC----LPQEGYHVVLANPPFSGRV--DKDRIVDDVKIG 338

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                       +   +LFL ++ + L      GGR  +++    LF   +     E+RR
Sbjct: 339 T----------TTATELLFLKYMMDSLRP----GGRCGVIVPEGVLF--GSTGAHKELRR 382

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            L+EN+ +EA+++LP  +F   + + T +         E    V  ++  +     + + 
Sbjct: 383 QLIENNRVEAVMSLPGGVFQPYSGVKTSVLFFRKGGRTE---NVLFLHVDN--DGYKLDA 437

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSR 466
                I  D    ++  Y  RE  + + 
Sbjct: 438 NHDTPIEADDLPGLVAAYRDREANREAW 465


>gi|189499173|ref|YP_001958643.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
 gi|189494614|gb|ACE03162.1| N-6 DNA methylase [Chlorobium phaeobacteroides BS1]
          Length = 775

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 158/461 (34%), Gaps = 68/461 (14%)

Query: 65  SNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
            ++D  +       SF+      Y+ + L      N  +  +  +S+      +      
Sbjct: 40  DDMDQAAIKAGGSPSFFVDDLENYAWTRLMDQRIGN--QERMNLYSEALIKFSQAKQLPE 97

Query: 123 TIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
               + K+  L     +    F     + D      + N YE+L+    S+    A  F 
Sbjct: 98  LFRGIFKSAFLPYRSPETLGLFLKEIDYFDYSHPEELGNAYEYLLSIMSSQG--DAGQFR 155

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231
           TPR ++     ++          +P     + DP CGTGGFL  +  H+ +         
Sbjct: 156 TPRHIIDFIVDVV----------NPTKADKVLDPACGTGGFLVSSYKHILEQHDGKDDPK 205

Query: 232 -------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     +   +    G +++P    +    M +        +  +  I Q  +LS 
Sbjct: 206 KKEKPLTPDERKKLMTNFEGYDIDPTMVRIAQVNMYLH-------QFKNPKIFQYDSLSS 258

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +     +F   L+NPPF    +       K         F       S   +LF+ ++ N
Sbjct: 259 EERWNDKFDVILANPPF-MSPKGGIKPHSK---------FSI---PSSRSEVLFVDYIMN 305

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
            L       GRA I++    +F         ++R+ L+E D + A+V+LP+ +F   + +
Sbjct: 306 HLRPK----GRAGIIVPEGIIFQSGT--AHKQLRKNLVE-DGLYAVVSLPSGVFAPYSGV 358

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            T + + +N    +   ++  +          + G  +R I+ +     LDI      G+
Sbjct: 359 KTSILLFNNE-LAKTSTEILFVKIE---QDGFDLGATKRPISKNDLPTALDILNKWNTGE 414

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
                +       + K+      +   D+  +A    +  W
Sbjct: 415 KVE--NKLAVYVEKSKIAENGDYNLSGDRYRVATDYTNAKW 453


>gi|159901787|ref|YP_001548032.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894826|gb|ABX07904.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 571

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 152/432 (35%), Gaps = 72/432 (16%)

Query: 6   GSAASLANFIWKNAEDLW------GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
            +  +L + +W+  + L       G      + + +     LR ++  +E  R       
Sbjct: 10  STNETLRSNMWRACDILRRDNNVGGVM---QYTEHLAWLLFLRFMD--MEEKRRVDLALL 64

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-----SDNAKAI 114
                  +          + F+ + E           +      +        S  A+ I
Sbjct: 65  NEMPYHPVLHGDL----SWDFWASPEALERRSAPELIQFVRGRLLPGLATLTGSSLARTI 120

Query: 115 FEDFDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
              F   ST  +              L  + +  + I    D+     +S  YE L+ R 
Sbjct: 121 AGIFSDESTGDQNVVRAVPVCASGYNLKDVLEIINSIHFELDS-DLFTISLFYEDLLERM 179

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            SE +  A +F TPR V+     L+          +P +  T+YDP  G+ GFL  A   
Sbjct: 180 SSE-NRTAGEFHTPRAVIRFMVELM----------APQIGETVYDPAYGSAGFLVQAFLF 228

Query: 227 VADCGSHHKIPPILV---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL- 282
           +       +    L      G E +  +  +    M++  +        +  + + +TL 
Sbjct: 229 MQPFARTIEEHTSLHEQTFFGIEKKALSALLGTMNMVLHGVN-------APKLLRANTLE 281

Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            S    +G+R+   L+NPPFG                     F     K +   +LFL H
Sbjct: 282 ESMQGDSGQRYDVVLTNPPFGGTEGAHIQQN-----------FAV---KANATELLFLQH 327

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
           +  KL+  PN   RAAIV+    LF   A    +E+++ LL+   + A+ +LP   F   
Sbjct: 328 IIKKLKRTPNA--RAAIVVPEGTLFRSGA---FAEVKQDLLQQFHLFAVFSLPPGTFAPY 382

Query: 401 TNIATYLWILSN 412
           +++ T +  L  
Sbjct: 383 SDVKTAILFLKR 394


>gi|289706682|ref|ZP_06503030.1| N-6 DNA Methylase [Micrococcus luteus SK58]
 gi|289556602|gb|EFD49945.1| N-6 DNA Methylase [Micrococcus luteus SK58]
          Length = 490

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/508 (15%), Positives = 162/508 (31%), Gaps = 76/508 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           I     LRRL+ A     +  R        +  D +             S+   + +   
Sbjct: 32  ITYLLFLRRLDEAQTQAEAKARRTNQPVETTIFDADHQHLRWHQLKNVASDELFARMDRE 91

Query: 95  ------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                      +    ++++ + +     F        +  A +L         + L   
Sbjct: 92  VFPFLRRLGQQIGGEDSTYAHHMRD--ARF-------TIPNARMLATAVDLIDKLPLTN- 141

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   ++YE+L+ +  +        F TPR ++ L   +           +P     
Sbjct: 142 ---RDTTGDLYEYLLSKLSTAG--RNGQFRTPRHIIDLMVRM----------TAPTPEDV 186

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP CGT GFL  A  ++ +                  + HG + +     +    ML+
Sbjct: 187 IVDPACGTAGFLVGASEYLREEHPELFFDMNQRLHFNRRMFHGYDFDSTMLRIASMNMLM 246

Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             +E       S +I    +L++   D   G ++   L+NPPF    + +  + + +   
Sbjct: 247 HGVE-------SPDIAYRDSLAQGASDGDAG-KYSLILANPPFAGSLDAEGVSSDLQR-- 296

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                    + K         +            GGRAA+++    LF   +     ++R
Sbjct: 297 ---------VVKTKKTE----LLFLALFLRLLQPGGRAAVIVPEGVLF--GSSKAHKDLR 341

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R L+E+  ++A+V LP  +F     ++T +    N         V   +         + 
Sbjct: 342 RMLVEDHHLQAVVKLPAGVFKPYAGVSTAILFFRNDGPGS-TDDVWFYDVRADG---FSL 397

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             KR  +  +    ++  + +   G+  R    ++F   +  ++      + L       
Sbjct: 398 DDKRTPVEANDLPDLVQRWQNPA-GEKDRPRTAQSFLVPKADIVE---QGYDLSLNRYKE 453

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQ 525
           LE +       PL     L+ L   +  
Sbjct: 454 LEIE-EVEHRDPLEILVDLEQLDAEIAA 480


>gi|268599116|ref|ZP_06133283.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11]
 gi|268583247|gb|EEZ47923.1| LOW QUALITY PROTEIN: N-6 DNA methylase [Neisseria gonorrhoeae MS11]
          Length = 359

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/325 (20%), Positives = 142/325 (43%), Gaps = 43/325 (13%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI+ + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G  L
Sbjct: 1   YLIKDYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGTLL 56

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +  + + +           + + Q++  ++  +         L  +       N+ QG+
Sbjct: 57  MNVAHVIGE--------DKCMIYTQDISQKSSNLLR-----LNLSLNNLVHSLNNVVQGN 103

Query: 281 TLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           T+            K+F + +SNPPF   +   +D +E +       RF  G+PKI    
Sbjct: 104 TILSPYHKDASDRLKKFDFIVSNPPFKLDFSDFRDQLESDENRE---RFFAGIPKIKAKD 160

Query: 336 -------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                   LF+ H+   L+      G+AAIVL +   F       + +IR +L+EN ++ 
Sbjct: 161 KDKMEIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREYLVENKMLA 214

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            +V++P+++F  T     +  +        + KV LI+A+ L   I++   ++ +++ ++
Sbjct: 215 GVVSMPSNIFATTGTNVSILFIDK----TNKDKVVLIDASGLGEKIKDGKNQKTVLSCEE 270

Query: 449 RRQILDIYVSRENGK-FSRMLDYRT 472
            ++I + + +++  + FS ++ Y  
Sbjct: 271 EQKICNTFTNKQAVEDFSVVVGYDE 295


>gi|194336531|ref|YP_002018325.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309008|gb|ACF43708.1| N-6 DNA methylase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 553

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/556 (14%), Positives = 178/556 (32%), Gaps = 96/556 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVRE---KYLAFGGSNIDLESFVKVAGYSF-YNTSEYS--- 87
           I     ++R++   +  + A  E   +        + +    +    SF Y   + +   
Sbjct: 34  ITYLLFMKRMDDQ-DQEKQASAEWAGEPYTSKFKGVWIPQEYRGKSNSFNYAIDKSTLRW 92

Query: 88  --LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143
                + +     ++++ +  +  +       F     + +  + K  LL +  K    I
Sbjct: 93  SEFKHMQAEEMLTHVQTKVFPYLKDMNGAESQFSHHMKNAVFIIPKPSLLVEAVKTVDEI 152

Query: 144 ELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
               +   +        +  ++YE L+       +     F TPR ++ +   L+     
Sbjct: 153 FEVMEKDSNEKGQAFQDIQGDVYEFLLSEIA--SAGKNGQFRTPRHIIKMMADLV----- 205

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------------C 230
                 P +  T+ DP CGTGGFL  A  ++                             
Sbjct: 206 -----EPKLGHTIADPACGTGGFLLGAYQYIVTQLAIRAGNKDLVADEDGFLRTSVSVGL 260

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K        G +++     + +  +++  ++          I    TLSK      
Sbjct: 261 TEQAKSILGKTLFGYDIDSTMVRLALMNLMMHGID-------EPEIDYKDTLSKSFTEES 313

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   ++NPPF               K      F     K     +LF+ ++   L+   
Sbjct: 314 CYDIIMANPPFTGSI----------DKGDINESFTLSTTKT---ELLFVENIYRLLKK-- 358

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
             GG A +++    LF   +G     +R+ L++   ++A++ +P+ +F     ++T + +
Sbjct: 359 --GGTACVIVPQGVLF--GSGGAFKALRKLLVDRCDLKAVITMPSGVFKPYAGVSTSILL 414

Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +       + T+     V   +      S+ ++  K+    D     I++ Y  R + +
Sbjct: 415 FTKVWGPLDKVTKPATEHVWFYDMQSDGYSLDDKRSKQEGFGD--LLDIVENY-KRRSVE 471

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA---DITWRKLSPLHQSFWLDILK 520
                  + F   RI++         L +      E    +     L  L  +   +I +
Sbjct: 472 HDTDRTQKFFFVPRIEIEGEGGYDLSLSRYKTDVFEEVVYESPSVILDKLIAAEVGEIDE 531

Query: 521 PMMQQIYPYGWAESFV 536
             +  I      E   
Sbjct: 532 AELTNIQSGIVRELLE 547


>gi|117920472|ref|YP_869664.1| N-6 DNA methylase [Shewanella sp. ANA-3]
 gi|117612804|gb|ABK48258.1| N-6 DNA methylase [Shewanella sp. ANA-3]
          Length = 513

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/504 (16%), Positives = 176/504 (34%), Gaps = 114/504 (22%)

Query: 5   TGSAASLANFIWK------NAEDLWGDFKHTDFGKVI--LPFTLLRRLECALEPTRSAVR 56
           TG   S  N +W+       A  L           VI  + F +  RL    E  R   R
Sbjct: 3   TGKLKSDINKLWEEFWTGGIANPL----------TVIEQITFLMYARLLDLHEQ-RDEKR 51

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
            K           ++   +  + F +  + ++  L       + ++     S     +F 
Sbjct: 52  AKLRGIDFKRRFNDNQQHIRWHRFIHQDKDTMLKLVRDEVFPHFKNASGEGS-----LFG 106

Query: 117 DFDFSSTIARLEKAGLLYK---ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +F        ++ A  + +   + ++   +             ++YE+L+ +  +     
Sbjct: 107 EF--------MKDAQCMIQKPTLMESAVEMIDKLPLEDSDTKGDLYEYLLSKLTTAG--I 156

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-- 231
              F TPR ++     +L           P +   + DP+CGT GFLT A  ++ +    
Sbjct: 157 NGQFRTPRHIIRAMVEML----------DPTVEDRIVDPSCGTAGFLTVAYEYLLEKYTS 206

Query: 232 ----------------------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                                        H       + HG + +     +    +++  
Sbjct: 207 PEGVHTETVVGDNGEAQQVKIYSGDLLVEHRDYVNTDMFHGFDFDATMLRIAAMNLVMHG 266

Query: 264 LESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +          ++    TLS          +   +  C++NPPF       K ++++E  
Sbjct: 267 V-------TEPDVHYQDTLSGSFTERFPNQSKDAYTLCIANPPF-------KGSLDEEDV 312

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           +  + R    + K     +LF+  +   L+     GG+ AI++    LF   + +   ++
Sbjct: 313 DPAILR----MVKTKKTELLFVAQILRLLK----NGGKTAIIVPDGVLF--GSSNAHQQL 362

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           R+ ++EN+ ++A+V+LP+ +F     ++T +  ++      R   V   +         +
Sbjct: 363 RQHIIENNELQAVVSLPSGVFKPYAGVSTAILFITKG---SRTDHVWFYDVQADGM---S 416

Query: 437 EGKKRRIINDDQRRQILDIYVSRE 460
              KR  I D+    ++  + +R+
Sbjct: 417 LDDKRTPIKDNDLPDLVAKFKARD 440


>gi|317051876|ref|YP_004112992.1| N-6 DNA methylase [Desulfurispirillum indicum S5]
 gi|316946960|gb|ADU66436.1| N-6 DNA methylase [Desulfurispirillum indicum S5]
          Length = 554

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/558 (14%), Positives = 182/558 (32%), Gaps = 99/558 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYSFYNTSEYS--- 87
           I     ++RL+  L+  + A  E     Y +          +    G   Y   + +   
Sbjct: 34  ITYLLFMKRLDE-LDQKKQADAEWTGEPYTSKFAGQWIPPEYRDKEGADNYAVDKRTLRW 92

Query: 88  --LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI 143
                + +     +++S +  F  +      +F     + +  + K  LL +  K    I
Sbjct: 93  SEFKRMQAEEMLQHVQSKVFPFLKDMNGAESNFTHHMKNAVFIIPKPALLVEAVKTIDEI 152

Query: 144 ELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
               +            +  ++YE L+    +        F TPR ++ L   L+     
Sbjct: 153 FEIMEKDSQEKGQAFQDIQGDVYEMLLSEIATAGK--NGQFRTPRHIIKLMADLV----- 205

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------ADC 230
                 P +   + DP CG+GGFL  A  ++                          A  
Sbjct: 206 -----RPQLGHRIADPACGSGGFLLGAYQYIVTELAKKAGAKDLQSDEDGFVRTSVAAGL 260

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +        G +++     + +  +++  ++         NI    TLSK      
Sbjct: 261 TEKAQAILQASLFGYDIDATMVRLGLMNLMMHGID-------EPNIDYKDTLSKSYLEEA 313

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   ++NPPF      DK  + +                 +   +LF+ ++   L+   
Sbjct: 314 EYDIVMANPPFTGSI--DKGDINENLSL-----------STTKTELLFVENIYRLLKK-- 358

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
             GG A +++    LF   +G     +R+ L+E   ++A++ +P+ +F     ++T + +
Sbjct: 359 --GGTACVIVPQGVLF--GSGGAFKTLRQMLVERCDLKAVITMPSGVFKPYAGVSTAILL 414

Query: 410 LSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +       + T+     V          S+ ++  K+    D   + I+  + +R N +
Sbjct: 415 FTKVWGPKDKVTQPATEHVWFYEMQADGYSLDDKRSKQEGYGD--LQDIVAKFHAR-NPE 471

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILD-----KTGLARLEADITWRKLSPLHQSFWLDI 518
                  + F   R ++    + ++ L      +     +  D     L  L ++   + 
Sbjct: 472 TDIDRTAKWFCVSRSEIAD-EKNNYDLSLSRYKEDVFEDVVYDKPADILKRLIEAEVGEA 530

Query: 519 LKPMMQQIYPYGWAESFV 536
               + ++      E   
Sbjct: 531 DDAQLAKVQSGIVRELLE 548


>gi|297520536|ref|ZP_06938922.1| Site-specific DNA-methyltransferase (adenine-specific) [Escherichia
           coli OP50]
          Length = 304

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 120/357 (33%), Gaps = 67/357 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVI--L-PFTLLRRLECALEPTRSAVREKYLAFG 63
           +   L   +WK  ++L        +   +  L     L+      + T      +YL  G
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVS--YQNYVNELASLLFLKMC----KETGQE--AEYLPEG 53

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
               DL+S +      FY      L  LG+ N +              +A+F++ +    
Sbjct: 54  YRWDDLKSRIGQEQLQFY---RNLLVHLGADNQKL------------VQAVFQNVN---- 94

Query: 124 IARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
              + +   L ++  N   ++ +            ++YE L+++  +E   GA  + TPR
Sbjct: 95  -TTITQPKQLTELVSNMDSLDWYNGAHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPR 153

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
            ++     LL           P     + DP  GT GFL +A  +V    +         
Sbjct: 154 PLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDT 203

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                     G EL P T  + +   L+  +E +     +  I+ G+TL  D     + H
Sbjct: 204 QDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPKAH 261

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
              +NPPFG     +                   +   S+  + F+ H+   L    
Sbjct: 262 IVATNPPFGSAAGTNITRTL--------------VHPTSNKQLCFMQHVIETLHPGG 304


>gi|253991410|ref|YP_003042766.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782860|emb|CAQ86025.1| type I restriction enzyme, modification subunit [Photorhabdus
           asymbiotica]
          Length = 544

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/450 (15%), Positives = 148/450 (32%), Gaps = 86/450 (19%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +           + F + S      +  +       +      +
Sbjct: 42  DTQEQKDEKRKQITGIDFKPRFVPVQQEFRFSHYSNLGADEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
             +    +  +F   + +  + K  LL K       + L           ++YE+L+ + 
Sbjct: 102 EGEQI-TLLGNFMKDARLE-IIKPSLLTKAVDMIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETVCDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESVHSEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKD 310
             +++  +E         +I    T+S+         +   F+  L+NPPF         
Sbjct: 266 MNLIMHGVE-------EPDIHYQDTMSQSFSANFPQASKNAFNLILANPPFTGSL----- 313

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 +          + K     +LFL  +   L++    GGR+A ++    LF   +
Sbjct: 314 -----DEEDTDPTLLAMV-KTKKTELLFLARILQMLKV----GGRSATIVPQGVLF--GS 361

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E++ +EA++ LP+ +F     +AT + I +      +  +V   +  +
Sbjct: 362 SKAHQSLRKILVEDNQLEAVINLPSGVFKPYAGVATAILIFTKG---GQTNEVWFYDLQN 418

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                 +   KR  I D+    ++  +   
Sbjct: 419 DGY---SLDDKRHPIKDNDLPHLIASWKHY 445


>gi|315187185|gb|EFU20942.1| N-6 DNA methylase [Spirochaeta thermophila DSM 6578]
          Length = 552

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 95/563 (16%), Positives = 193/563 (34%), Gaps = 99/563 (17%)

Query: 15  IWKNAEDLWGD-FKHTDFGKVILPFTLLRRLEC-ALEPTR-------SAVREKYLAFGGS 65
           +W+ A     D    T+  +    F  L+  +  ALE                   +   
Sbjct: 14  LWEIANVFRDDALHATERLETFSLFLFLKLWDEMALEQEEALGRSLNDEELAIPNKYRFH 73

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
               +       + F ++ ++         TR  ++ Y    + + + +     F  T+ 
Sbjct: 74  KWASDPDGYAKQHGFEDSVDFCRRMFDDLATRKVVDQYGKDITFDVRRL-----FGGTVF 128

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPD--------RVMSNIYEHLIRRFGSEVSEGAEDF 177
           RL     +  +    + + L    +           +    YE+L+++FG   ++   ++
Sbjct: 129 RLRYTTTIRALVSKLNELNLREIMMRGVGEPGERYDIFGRAYEYLLQKFGQ--NKEFAEY 186

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234
            TPR +V     ++           P +  T+YDP CGTGGF+  A   V          
Sbjct: 187 FTPRHIVDRMVQII----------DPEIGETIYDPACGTGGFIVRAFEWVRAKIERKTIS 236

Query: 235 --------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-- 284
                   +        G E  P    + +  M++        +D S  +Q   +LS   
Sbjct: 237 AAEKERLLRNLKEKHLIGVEHVPIVFKLALMNMILH-------KDGSSLLQNDDSLSNKA 289

Query: 285 -DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D+    ++   L+NPPFG   ++     E   K  E                LF+ H+ 
Sbjct: 290 QDIHKN-KYDVILANPPFGPTKQERLAQFEYHIKLYEA---------------LFIQHMM 333

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRT 401
           N L      GGRAA+VL    LF+ +     +  R+ L+E   + A+++LP  +F  +  
Sbjct: 334 NALRP----GGRAAVVLKEGLLFDSKKML-RAICRK-LVEQFEVLAVISLPNGVFNPYS- 386

Query: 402 NIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKKRRII----NDDQRRQILDI 455
              T + +      + + R  KV       + +  R+ G  RR +     D     ++ +
Sbjct: 387 GAKTSIVVFRKPLGRDDVRTSKVWFY---RVESDGRDLGATRRPLPDFETDGDLEHMVSL 443

Query: 456 Y----VSRENGKFSRMLDYRT---FGYRRI---KVLRPLRMSFILDKTGLARLEADITWR 505
           +       ++G    +L       F   +     + +     + L        +A+    
Sbjct: 444 FPYTWRHEKDGGVRAILKADDLKQFESEKSWWATIEQIRATDYNLTAGRYCPHQAEAVEH 503

Query: 506 KLSPLHQSFWLDILKPMMQQIYP 528
           +   +  +  L++ + + + +  
Sbjct: 504 EKPEVLINRLLELEEEITKDLQD 526


>gi|304409997|ref|ZP_07391616.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|307302290|ref|ZP_07582048.1| N-6 DNA methylase [Shewanella baltica BA175]
 gi|304351406|gb|EFM15805.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|306914328|gb|EFN44749.1| N-6 DNA methylase [Shewanella baltica BA175]
          Length = 640

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 159/501 (31%), Gaps = 129/501 (25%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHT--DFG---KVILPFTLLRRLECALEPTRSAVREKYL 60
            S  SL++F+    + +      +   +      IL    LR     L+   +   E+  
Sbjct: 15  ASTQSLSSFVKSICDVMRRSNCASALQYVPELTWIL---FLR----ILDAQEAKAHEEAE 67

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESYIAS--FSDNAKA 113
             G S     +            S Y           + N + N  +      F    + 
Sbjct: 68  VLGASFTPALN------------SPYRWRDWAAPFPKNDNEKENHPTTSEGKPFGWKRQE 115

Query: 114 IFED-----FDFSST--IARLEKAGL---------------------------------- 132
           +F       FDF +   +  L    +                                  
Sbjct: 116 LFAAGDGKLFDFINKELLPHLHSLDVDPQTGLPNPAANRKQRIMGRTMTAVERVRVDSEA 175

Query: 133 -LYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            L  I      I +   D      +S +YE L+ + G   +     F TPR+V+      
Sbjct: 176 NLRDILDKVHEINIDHVDDQHFFTLSQVYEDLLLKMGE-KNSDGGQFFTPREVIRAMVHT 234

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------GSHHKIPPILVPHG 244
           +           P + +T+YDP CGTGGFL  A  H+A         +           G
Sbjct: 235 V----------KPELGQTVYDPCCGTGGFLAIAYEHIARQLGQSPTSTDLDTLKHDTFFG 284

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------FTGKRFHYCLS 297
           +E E     + +A +++  ++         N+  G++L++             +F   L+
Sbjct: 285 REKENLVFPIALANLVLHGID-------QPNLWHGNSLTRRATYAGLFEQAPTQFDVILT 337

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG K  KD                       S   +LF+  +  +L       G  A
Sbjct: 338 NPPFGGKEGKDAQKNFAFE--------------TSSTQVLFVQDILAELAPK----GTCA 379

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
           IVL    LF     S   E +R L++   + AI++LP  +F      + T L   +  K 
Sbjct: 380 IVLDEGLLFRTN-ESAFVETKRKLVDECDLWAILSLPGGVFSTAGAGVKTNLLFFTKGKK 438

Query: 416 EERRGKVQLINATDLWTSIRN 436
            E   K+   + + +    + 
Sbjct: 439 TE---KIWYYDLSHVKVGKKT 456


>gi|229523506|ref|ZP_04412911.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae bv. albensis VL426]
 gi|229337087|gb|EEO02104.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio cholerae bv. albensis VL426]
          Length = 512

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 145/426 (34%), Gaps = 82/426 (19%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + +    +          V  +IYE+L+ +     +     F TPR ++ +   +L    
Sbjct: 123 VLRAAVDMVNDLPLDKSDVKGDIYEYLLSKLS--SAGINGQFRTPRHIIDMMVEML---- 176

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-------------------- 235
                        + DP CGT GFL+ +M ++    +  +                    
Sbjct: 177 ------DVQPTDVICDPACGTAGFLSRSMEYLMRIHTSAESIYQDEDDNPVYTGDLLHEY 230

Query: 236 --IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTG 289
                  +  G + +     V    ML+  +        + NI    +L+K         
Sbjct: 231 QDHINTKMFWGFDFDNTMLRVSAMNMLLHGV-------SAANITYQDSLNKSFLGQPQEE 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   L+NPPF  K   D+ +V  +            + K     +LF+  +   L+  
Sbjct: 284 NFFDKILANPPF--KGSLDEQSVNPK---------VLSMVKTKKTELLFVALILRMLK-- 330

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408
              GGR+A ++    LF   + S   ++R+ L++++ +EAI++LP+ +F     ++T + 
Sbjct: 331 --LGGRSATIVPDGVLF--GSSSAHQDLRKTLIDHNQLEAIISLPSGVFKPYAGVSTGIL 386

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           I +   +      V   + T       +   KR  I D+     L  +        +  L
Sbjct: 387 IFTKGGS---TDNVLFYDMTADGY---SLDDKRNPIKDNDIPDALAKWKRYNALYQANDL 440

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP--------LHQSFWLDILK 520
                 +         + +F++    +   + D++  +                 L  LK
Sbjct: 441 QALKAEFGDKT-----QKAFMVSADDIKAQKYDLSINRYKEVVYQEESYEDPKVILAKLK 495

Query: 521 PMMQQI 526
            +  +I
Sbjct: 496 ALENEI 501


>gi|227541296|ref|ZP_03971345.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182847|gb|EEI63819.1| type I site-specific deoxyribonuclease [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 533

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/426 (14%), Positives = 137/426 (32%), Gaps = 68/426 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNT 96
              L+ L+          +++   +     D E               +  L  L     
Sbjct: 35  LLFLKHLD--------KQQDEIEKWRLLGQDREDIFPAGAIEAGVPLRWRDLLALKDKKR 86

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLLYKICKNFSGIELHPDTVPD 152
               E+++  F    +       F + + R    ++    L  + +   G+E        
Sbjct: 87  VEAFENHVFPFLTANEDYPYKSPFGNFLKRAQFQIDNPATLASVMQRIDGLEFTNK---- 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ ++YE+++ +  ++       F TP  ++ L   L+           P     + DP
Sbjct: 143 DMLGDLYEYVLSKLATQG--TNGQFRTPTHIIDLMVKLI----------QPKPTEKIIDP 190

Query: 213 TCGTGGFLTDAMNHVADCGSHH-------KIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             GT GFL  A   + D                     G + +     +    + +   +
Sbjct: 191 AAGTAGFLVGANEWIKDHHKSDLRDERIRNKFKEEGLTGHDSDATMVRLAAMNLFLHGFD 250

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  + +I    +L   +      F   L+NPPF      D +++++E       + 
Sbjct: 251 -------NPSISYQDSLQPLENTPTGVFDVVLANPPFSGSV--DANSIDQELTTLFTTKK 301

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                      +LF+      L      GGRAA+++    LF+         +R+ L+++
Sbjct: 302 T---------ELLFVARFLTLLR----LGGRAAVIVPEGVLFSS--TKAHKALRKELVDH 346

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             ++A++ LP+  F  +   ++T +   +    +     V             +   KR 
Sbjct: 347 QSLDAVIKLPSGTFKPYS-GVSTAILCFTRA-DDAATDSVWFYEVRADGY---SLDDKRT 401

Query: 443 IINDDQ 448
            + D+ 
Sbjct: 402 PLLDEN 407


>gi|158522735|ref|YP_001530605.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511561|gb|ABW68528.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 554

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 90/557 (16%), Positives = 185/557 (33%), Gaps = 97/557 (17%)

Query: 35  ILPFTLLRRLECALEPTRSA----VREKY-LAFGGSNIDLESFVKVAGY--SFYN---TS 84
           I     ++RL+  L+  + A      EKY   F G+ I  E   K       F     T 
Sbjct: 34  ITYLLFMKRLDE-LDQKKQADGEWAGEKYTSKFAGTWIPPEHRDKPEKEQKPFAVKRHTL 92

Query: 85  EYS-LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFS 141
            +S    + +     ++++ +  F  +      +F     + +  + K  LL +  K   
Sbjct: 93  RWSEFKRMQAEEMLQHVQTKVFPFLRDMNGAESNFTHHMKNAVFIIPKPALLVEAVKTID 152

Query: 142 GIELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
            I    +            +  ++YE L+       +     F TPR ++ +   L+   
Sbjct: 153 EIFEIMEKDSQEKGQAFQDIQGDVYEMLLSEIA--SAGKNGQFRTPRHIIKMMAELV--- 207

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------A 228
                   P +   + DP CGTGGFL  A  H+                          A
Sbjct: 208 -------QPQLGHRIADPACGTGGFLLGAYQHIVTQLAKKAGKKDLQPDEDGFVRTSVAA 260

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +       +G +++     + +  +++  ++          I    TLSK    
Sbjct: 261 GLTEKAQAILQSSLYGYDIDSTMVRLGLMNLMMHGID-------EPQIDYKDTLSKGYLE 313

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              +   ++NPPF      DK  + +                 +   +LF+ ++   L+ 
Sbjct: 314 EAEYDVVMANPPFTGSI--DKGDINENLTL-----------STTKTELLFVENIYRLLKK 360

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GG A +++    LF   +G     +R+ L+E   ++A+V +P+ +F     ++T +
Sbjct: 361 ----GGTACVIVPQGVLF--GSGKAFKNLRQLLVERCELKAVVTMPSGVFKPYAGVSTAV 414

Query: 408 WILSNRKTEERRGKV-QLINATDLWTSIRNEG----KKRRIIN-DDQRRQILDIYVSREN 461
            + +  K    + KV Q       +  +  +G     KR  +      + I+  Y +R N
Sbjct: 415 LLFT--KAWGPKDKVTQPATEHVWFYEMAADGYSLDDKRTKLAGYGDLQDIITKYHAR-N 471

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
            +       + F   R  +             +     ++ +   + L  L +S   +  
Sbjct: 472 PETDTDRTQKGFVVPRADIEAKGYDLSLSRYKEDVFEEIQYEAPAKILDKLLKSEVGEAG 531

Query: 520 KPMMQQIYPYGWAESFV 536
              + ++      E   
Sbjct: 532 DDDLAKVQRGIVRELLE 548


>gi|308179092|ref|YP_003918498.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307746555|emb|CBT77527.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 506

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 87/497 (17%), Positives = 175/497 (35%), Gaps = 69/497 (13%)

Query: 35  ILPFTLLRRLEC--ALEPTRS----AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           I     L+RL+        ++       E  +   G +    S+  +    F N  +  +
Sbjct: 32  ITYLLFLKRLDDNQIAAERKASRIGKPLENPVFPEGVDKFGRSYQDMRWSKFKNFDKSEM 91

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + + +    L   +   SD + + +           + K  LL K       I +   
Sbjct: 92  FAVFNESIFPFLREELTRQSDGSDSSYTH-HMKDARFTITKDHLLQKAVDLIDEIPMD-- 148

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                   ++YE+++ +  +        F TPR ++ L  A+           +P  +  
Sbjct: 149 --DRDTKGDLYEYMLSKIATAG--TNGQFRTPRHIIELLVAM----------RNPQPMEA 194

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLI 261
           + DP  GT GFL  +  ++ D                    HG + +     +    +L+
Sbjct: 195 ICDPASGTCGFLMASGEYLRDNNPELMFDPEQRAFFNNQQFHGFDFDSTMLRIGAMNLLL 254

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
             +E       +  I+   +L+ DL +   +++   L+NPPF      D + V KE    
Sbjct: 255 HGIE-------NPVIENRDSLA-DLHSADEEKYDVILANPPFAGSL--DSENVSKELLK- 303

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                     K     +LFL      L+     GGRAA+++    LF   +     ++R+
Sbjct: 304 --------TVKTKKTELLFLALFLRLLKP----GGRAAVIVPDGVLF--GSSKAHKDLRK 349

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            L+E+  +EA+V LP+ +F     ++T +   +   +      V   + T       +  
Sbjct: 350 QLVEDQQLEAVVKLPSGVFKPYAGVSTAVLFFTRTNSG-GTENVWFYDVTADG---FSLD 405

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
            KR  +       +L+ + +   G+ S           R +  R    SF++ K+ +A  
Sbjct: 406 DKRNPLESSDLPDVLERWKA-VRGELSEERAAAELE--RARTER----SFVVPKSEIAEN 458

Query: 499 EADITWRKLSPLHQSFW 515
             D++  +   +     
Sbjct: 459 GYDLSINRYKEIEYEEV 475



 Score = 37.6 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 632 GYEINFNRFF---YQYQPSRKLQDIDAELKGVEAQIATLLEEMAT 673
           GY+++ NR+    Y+    R   +I A+++ ++A IAT L E+  
Sbjct: 459 GYDLSINRYKEIEYEEVEHRTPAEIIADIEQLDADIATGLAELKG 503


>gi|160914349|ref|ZP_02076568.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991]
 gi|158433822|gb|EDP12111.1| hypothetical protein EUBDOL_00357 [Eubacterium dolichum DSM 3991]
          Length = 435

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 144/434 (33%), Gaps = 50/434 (11%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            K       F      ++   LL ++      ++L  D         IYE +++    + 
Sbjct: 46  IKKSIVKTTFEDANNYMKDGVLLRQVINVIDKLDLG-DYEESHAFGEIYESILKEL--QS 102

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD- 229
           +  + +F TPR V      ++           P +  T+ D  CGTGGFLT  +  + + 
Sbjct: 103 AGSSGEFYTPRAVTDFMAKMI----------EPKIGETMADFACGTGGFLTSWIKELENK 152

Query: 230 -CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285
              +  +       +G E +   + +C+  ML+  ++          I+  ++L     D
Sbjct: 153 IQTNEDRRKFDSSIYGIEKKQFPYMLCITNMLLHGIDI-------PRIEHDNSLLYDVLD 205

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                +F   L NPP+G   + D                       S+ + LF+  +  +
Sbjct: 206 YTDDDKFDVILMNPPYGGNEKSDVKNHFPSDLA------------SSETADLFMSVIMYR 253

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404
           L+      GR A++L    LF     + +  I++ LL    +  IV +P  +F   T+I 
Sbjct: 254 LKE----NGRVAVILPDGFLF--GTDNAKVSIKKKLLNEFNLHTIVRMPHSVFSPYTSIT 307

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           T +         +     +L    D+    +N   K + +  +     +  + +RE    
Sbjct: 308 TNILFFDKTGKTKETWFYRL----DMPEGYKNF-SKTKPMKLEHFDPAIKWWNNREEISI 362

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
               D      +     +   +           +       K     +      +  ++ 
Sbjct: 363 -DGFDKAKKYSKAELEEKNYNLDLCGYPHEEEEILPPKDLIKEYQEKRKSLNADIDRILG 421

Query: 525 QIYPYGWAESFVKE 538
           QI      +   +E
Sbjct: 422 QISEILGFDFEEEE 435


>gi|220932854|ref|YP_002509762.1| N-6 DNA methylase [Halothermothrix orenii H 168]
 gi|219994164|gb|ACL70767.1| N-6 DNA methylase [Halothermothrix orenii H 168]
          Length = 484

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 173/505 (34%), Gaps = 73/505 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +          +E+       + DL+       Y + N +    +   S++  
Sbjct: 33  MLFLKIFDT---------KEQEEWAFEDDYDLKGPFVPEKYQWGNWAGVRKADRMSSDEL 83

Query: 98  NNLESYIASFSDNA--------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 +     N         + I     F  +   ++   LL+++    + I+   D 
Sbjct: 84  IEFVEELFKELKNLSVDEHTDRRKILVRDVFEDSNNYMKSGVLLWQVIDKINEIDFG-DY 142

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                 ++IYE +++   S  +  A ++ TPR V       L          +P +   +
Sbjct: 143 KERHAFNDIYETILKDLQSAGN--AGEYYTPRAVTDFVIDRL----------NPQIGEKV 190

Query: 210 YDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            D  CGTGGFL  A+ H+        +          HG E +P  H +C   M++  ++
Sbjct: 191 ADFACGTGGFLISALEHMKASKENLTTEESETIKNSLHGIEKKPMPHLLCCTNMILHDID 250

Query: 266 SDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                    +I   ++L+   +D    K++     NPPFG     +++ ++         
Sbjct: 251 F-------PDILHQNSLATNVRDYPEEKKYDVIAMNPPFGG---TEEEGIKMNFPAEY-- 298

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  + S+ + LF+  + ++++     GGR  IVL    LF     + +  I++ LL
Sbjct: 299 -------RTSETADLFMTLILHRIKK----GGRVGIVLPDGFLF--GNDNAKIVIKKKLL 345

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
               +  IV LP  +F   T+I T L             +V            +    K 
Sbjct: 346 NEFNLHTIVRLPNGVFAPYTDINTNLLFFDYN--GTGTEEVWYYEHQLPEGYKKYTKTKP 403

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             + + +  Q  + +  RE  +F+  +           + R   + F         L+  
Sbjct: 404 IRMEEFKAEQ--EWWDKREENEFAWKVSKEE------IIERDYNLDFKNRNVEEEDLDHP 455

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQI 526
               K          +I + ++ ++
Sbjct: 456 EVILKKYNEAVKEVEEIQEKIIAEL 480


>gi|284037968|ref|YP_003387898.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma
           linguale DSM 74]
 gi|283817261|gb|ADB39099.1| Site-specific DNA-methyltransferase (adenine- specific) [Spirosoma
           linguale DSM 74]
          Length = 502

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 150/393 (38%), Gaps = 68/393 (17%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLST 90
              L+  +        L     +       +     D E         F + + + +L  
Sbjct: 35  MLFLKIFDDKDIEMELLADDYQSPIPTDCQWRNWAADNEGITGDELQQFVDLTLFPTLKN 94

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L   +   N  + +       + +FE  +       ++    + KIC   + I+    + 
Sbjct: 95  LPVKD--GNRRALL------IREVFEGNN-----NYMKSGINIRKICNKLNEIDF-NSSE 140

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +  ++YE +++    + +  + +F TPR V    T ++          +P +   ++
Sbjct: 141 DRHLFGDLYEGILKEL--QSAGDSGEFYTPRAVTQFMTEMV----------NPRLGEIIF 188

Query: 211 DPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP CGTGGFL +A+ H+          ++       G E +P  + + +  +++  +E  
Sbjct: 189 DPACGTGGFLVNAIEHIRQREVNSVDDRLTLQKTIRGCEYKPLPYELALTNLILHDIEV- 247

Query: 268 PRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  NI+ G +L ++  +     R    L+NPPFG               NG  G F
Sbjct: 248 ------PNIEYGDSLGREYSSIRDRDRVDVILANPPFGGTVA-----------NGNEGNF 290

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                +  + + LFL+ + N L       GRAA+VL    L        +  +R+ LLE+
Sbjct: 291 PANF-RTRESADLFLVLIVNLLRT----NGRAALVLPDGSL---TGEGVKQRVRQKLLED 342

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKT 415
             +  IV LP  +F  + T +AT L     ++T
Sbjct: 343 CDLHTIVRLPNSVFQPYAT-VATNLLFFEKKRT 374


>gi|172039949|ref|YP_001799663.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
 gi|171851253|emb|CAQ04229.1| type I restriction-modification system, methyltransferase subunit
           [Corynebacterium urealyticum DSM 7109]
          Length = 524

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 111/332 (33%), Gaps = 55/332 (16%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +E    L ++ +    +E     +      ++YE+++ +  S        F T   ++ L
Sbjct: 117 IENPATLLRVMEQVDALEFTNRDMS----GDLYEYMLSKLASSG--TNGQFRTTSHIIDL 170

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------KIPPI 239
              L+           P     + DP CGT GFL  A        +              
Sbjct: 171 MVELM----------RPAPKHRVIDPACGTAGFLVGAREWTRHHHADEFMDRRVSDWYTQ 220

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSN 298
               G + +     +    M +   E         NI    +L +      + F   L+N
Sbjct: 221 RALTGFDFDSSMVRIAAMNMFMHGFE-------DPNISYRDSLQQVPEADREAFDIILAN 273

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF      D+ +++ E  N         L       +LFL      L+     GGRAA+
Sbjct: 274 PPFAGSI--DESSLDPELAN---------LISSKRTELLFLARFLTLLKP----GGRAAV 318

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTE 416
           ++    LF   +     EIR+ L++   ++A++ LP+  F  +   ++T +   +     
Sbjct: 319 IVPEGVLF--GSTKAHREIRKHLIDEQRLDAVIKLPSGTFKPYS-GVSTAILCFTRT-DR 374

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
                V     T       +   KR  + D  
Sbjct: 375 GSTDDVWFYEVTADGY---SLDDKRTPLLDAN 403


>gi|319951808|ref|YP_004163075.1| n-6 DNA methylase [Cellulophaga algicola DSM 14237]
 gi|319420468|gb|ADV47577.1| N-6 DNA methylase [Cellulophaga algicola DSM 14237]
          Length = 552

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 93/603 (15%), Positives = 187/603 (31%), Gaps = 126/603 (20%)

Query: 1   MTEFTGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           M +      +L   +W        A  L    +       I     ++RL+  LE  R  
Sbjct: 1   MLQNNSKLKALIVSLWNTFWSGGIANPL-TAIEQ------ITYLLFVKRLDE-LESKRER 52

Query: 55  VREKYLAFGGSNID-------LESFVKV-------AGYSFYNTS------------EYSL 88
             E       S  D        ES  +             YN              ++S 
Sbjct: 53  DAEFTSEAYESKFDGEYTPWIDESLYRPKPEVTETEKARLYNKREKALTPRPKKELKWSF 112

Query: 89  -STLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGI-- 143
              + + +   +  + +     +       F     + +  +EK  LL +  K    I  
Sbjct: 113 FKAMPADDMLVHFRNNVFPHIKDLNDETSSFTKYMKNAVFIIEKPSLLVEAIKKVDEIFL 172

Query: 144 ELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           E+  D          +  ++YE L++   +        F TPR ++ L   L        
Sbjct: 173 EIAEDAKDGKQSFQDIQGDVYEMLLKEIATAGK--NGQFRTPRHLIKLLAEL-------- 222

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------------CGS 232
               P +   + DP CGTGGFL  A  ++                               
Sbjct: 223 --TEPKLGHKIADPACGTGGFLLGAYQYILSDLVRQKEPDLLVADEDGFERASISSVLDK 280

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
            +K       +G +++     + +  +++  ++       + +I+   +LSK+      +
Sbjct: 281 KNKQILNDSFYGFDIDTTMVRLGLMNLMMHGID-------NPHIEYKDSLSKNYNETGDY 333

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              L+NPPF  K     D  +     G                +LFL  ++  L      
Sbjct: 334 DIVLANPPFTGKL----DKGDVNPDLGID---------TGSTELLFLARISKMLR----A 376

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411
           GG+AA+++    LF G         R  LL+++ +EA+++LP   F   T + T + + +
Sbjct: 377 GGKAAVIIPEGVLFGGSKAQ--KATREILLKDNQLEAVISLPAGAFKPYTGVKTAILVFT 434

Query: 412 NRKTEE---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             + +       KV      +      +    RR + ++    +   Y +R+  ++    
Sbjct: 435 KVEEDSKTWHTDKVWFYALENDGY---SLDDNRRKLEENPLPVVKSEYTARKTSEYPDR- 490

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
               F    + +         L        E      +      +  +++ K ++  +  
Sbjct: 491 KNHFF----VPLAEIQENDLDLSYNRYKEYEYTEQTYEPPKEILAKLMEMEKGILADMQE 546

Query: 529 YGW 531
              
Sbjct: 547 LND 549


>gi|317177250|dbj|BAJ55039.1| Type I restriction enzyme M protein [Helicobacter pylori F16]
          Length = 543

 Score =  150 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/552 (15%), Positives = 185/552 (33%), Gaps = 85/552 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83
              ++  +I    L + L    E        +      +  D + F +     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFE-----FLFEQEFPNQTIQDYKDFNEEEKEDFFITLID 85

Query: 84  -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFE--------------- 116
                   +  LS L   +  +N     L+      S N   +F                
Sbjct: 86  KRLPKLAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDETTIALFESV 145

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173
               +    R     +L    KNF   +   +          + I+E+L++ + +  +  
Sbjct: 146 SQYINEESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGK 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL++         P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++     +      K   +G+TL+    + +   
Sbjct: 252 --GTDSCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           +  Y +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  
Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T  
Sbjct: 360 NMLSNK----GKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
              +       +E+    V LI+A+ L         K+  +       IL+ + ++ +  
Sbjct: 414 NVSIIFFKKTPSEDG---VVLIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKA 470

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F  ++ +     +   +      +       +++ E +   ++ S    S + +     
Sbjct: 471 DFCALVSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530

Query: 523 MQQIYPYGWAES 534
            + +   G    
Sbjct: 531 QEILETLGNLNY 542


>gi|217033265|ref|ZP_03438696.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10]
 gi|216944206|gb|EEC23631.1| hypothetical protein HP9810_9g18 [Helicobacter pylori 98-10]
          Length = 543

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/549 (15%), Positives = 189/549 (34%), Gaps = 76/549 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNIDL---- 69
              ++  +I    L + L    E               +    E+   F  + ID     
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFSEEEKEDFFLTLIDERLPK 90

Query: 70  ---ESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121
              +  +       +N ++  L   +      +N      + S +   I  FE      +
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDETTIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R     +L    KNF   +   +          + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    + +   +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNSYHSKECKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLNN 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ A+V+ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAMVVPTG--FISAKSGIENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSVI 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 +E    +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFKKTPSE---DEVILIDASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           + +     +   +      +       +++ E +   ++ S    S + +  + + Q+I 
Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDES-QSLQQEIL 534

Query: 528 PYGWAESFV 536
                  F 
Sbjct: 535 ETLKRVRFE 543


>gi|17548113|ref|NP_521515.1| type I restriction enzyme M protein [Ralstonia solanacearum
           GMI1000]
 gi|17430420|emb|CAD16893.1| probable typeIrestriction enzyme m protein [Ralstonia solanacearum
           GMI1000]
          Length = 481

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 148/446 (33%), Gaps = 79/446 (17%)

Query: 4   FTGSAASLANFIWK------NAEDLWGDFKHTDFGKVI--LP-FTLLRRLEC--ALEPTR 52
            T     L + IW        A+ +          ++I  L     L+RL+    L    
Sbjct: 2   MTADLQRLVDRIWDAFHTEGIADPV----------EIIEQLTCLLCLKRLDDLHVLARHL 51

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           +    +  A G      E    +    F   S  ++  + ST         +      A 
Sbjct: 52  ARRSRQPAASGARLPFREDQDDLRWSVFRTLSPQAMFDVVSTR-GIPFLQALGDNDPAAG 110

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
              ED  F      L    LL +I +    I L        V   +YE L+ R    ++ 
Sbjct: 111 RHMEDIRF-----TLTTPALLARIVQLLDAIPL----HRRDVRGAVYESLLGRIA--LTR 159

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            +  F TPR +V     L            P    TL DP  GT GFL  A  ++     
Sbjct: 160 RSGAFHTPRHIVRFMVEL----------TRPDPSDTLCDPAAGTCGFLAAAGEYLRREHP 209

Query: 233 HHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                            HG E++     +    +L+  +E          ++ G  L+  
Sbjct: 210 GLLHDARQSAHFHHGMFHGHEIDRAMLRIGSMNLLLHGVEG-------AGLRHGDALAG- 261

Query: 286 LFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               +   Y   L++PPF          V++   + +L R    L +     +LFL    
Sbjct: 262 AHADETGAYSLILTHPPFTGD-------VDRGGADPDLLR----LVRTRKTELLFLARCL 310

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TN 402
             L      GGRAA+++    LF   +G     +RR L+E+  +E ++ LP  +F     
Sbjct: 311 RLLRP----GGRAAVIVPDGVLF--GSGIAHRTLRRMLVEDHRLEGVIKLPGGVFRPYAG 364

Query: 403 IATYLWILSNRKTEERRGKVQLINAT 428
           I T + + +   T    G V   +  
Sbjct: 365 IGTAILLFTRTDTG-GTGHVWFYDLR 389


>gi|227506257|ref|ZP_03936306.1| type I site-specific deoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
 gi|227197158|gb|EEI77206.1| type I site-specific deoxyribonuclease [Corynebacterium striatum
           ATCC 6940]
          Length = 532

 Score =  150 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 141/423 (33%), Gaps = 72/423 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NT 96
              ++ L+      R    +K  A G      +     +              L    + 
Sbjct: 44  LLFIKDLD-----ERQVQIDKRRALGDPTATED-IFDASQQD------LRWRNLIEDRDI 91

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIA----RLEKAGLLYKICKNFSGIELHPDTVPD 152
                + I       K       F   +A     +E    L ++ +    +         
Sbjct: 92  ARRKATIITKVFPFIKE-MGGTGFQEHMANASFEIESEATLSRVMELIDQLHFSNK---- 146

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE+++ +  +        F TP  ++ L  AL+           P   + + DP
Sbjct: 147 DMKGDLYEYMLDKLSTSG--TNGQFRTPSHIIELIVALM----------EPTPQQRIIDP 194

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLE 265
            CGT GFL  A + +A                      G + +     +    M +   E
Sbjct: 195 ACGTAGFLVAANDWIALHHREDLFNKETRTTFTDEGLTGFDFDKTMVRIAAMNMFMHGFE 254

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                    NI    +L K   T + F   L+NPPF      DKDA++ + K+       
Sbjct: 255 -------DPNISHHDSLQKLPTTFEDFDLVLANPPFAGSL--DKDAIDPKLKS------- 298

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
             +       +LF+      L+     GGRAA+++    LF   +      +R+ L+E+ 
Sbjct: 299 --VTTAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVEDQ 350

Query: 386 LIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
            ++A++ LP+ +F  +   ++T +   +   +     +V   + T       +   KR  
Sbjct: 351 RLDAVIKLPSGVFKPYS-GVSTAVLCFTRTDSG-GTDEVWFYDVTADGY---SLDDKRTP 405

Query: 444 IND 446
           + +
Sbjct: 406 LLE 408


>gi|227834296|ref|YP_002836003.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455312|gb|ACP34065.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 590

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 73/424 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NT 96
              ++ L+      R    +K  A G      +     +              L    + 
Sbjct: 101 LLFIKDLD-----ERQVQIDKRRALGDPTATED-IFDASQQD------LRWRNLIEDRDI 148

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIA----RLEKAGLLYKICKNFSGIELHPDTVPD 152
                + I       K       F   +A     +E    L ++ +    +         
Sbjct: 149 ARRKATIINKVFPFIKE-MGGTGFQEHMANASFEIESEATLSRVMELIDQLHFSNK---- 203

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE+++ +  +        F T   ++ L  AL+           P   + + DP
Sbjct: 204 DMKGDLYEYMLDKLSTSG--TNGQFRTTSHIIELLVALM----------EPTPQQRIIDP 251

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLE 265
            CGT GFL  A + +A                      G + +     +    M +   E
Sbjct: 252 ACGTAGFLVAANDWIAHHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFE 311

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                    NI    +L +      + F   L+NPPF      DKDAV+ + K+      
Sbjct: 312 -------EPNISYRDSLQQLPTTFDEAFDLVLANPPFAGSL--DKDAVDPKLKS------ 356

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              +       +LF+      L+     GGRAA+++    LF   +      +R+ L+E+
Sbjct: 357 ---VTTAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVED 407

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             ++A++ LP+ +F  +   ++T +   +   +     +V   + T       +   KR 
Sbjct: 408 QRLDAVIKLPSGVFKPYS-GVSTAVLCFTRTDSG-GTDEVWFYDVTADGY---SLDDKRT 462

Query: 443 IIND 446
            + D
Sbjct: 463 PLLD 466


>gi|15611483|ref|NP_223134.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           J99]
 gi|4154948|gb|AAD05994.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 543

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 68/469 (14%), Positives = 162/469 (34%), Gaps = 80/469 (17%)

Query: 82  NTSEYSLSTLGSTNTR--NNLESYIA------SFSDNAKAIFEDFDFSSTIARLEKAGLL 133
           N   ++  +   T      ++  YI       +F+ +     ++F+F      L+     
Sbjct: 125 NAELFNTKSTDETTIALFESVSQYINEGSKRANFTRSLLDKLKNFNFKQAFLNLQN---- 180

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
                                 + I+E+L++ + +       ++ TP  +  +   LL+ 
Sbjct: 181 ---------------QQGYDFFAPIFEYLLKDYNNNSGGTYAEYYTPLSIASIIAKLLV- 224

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
                    P     +YDP+ GTG  L    + +               + Q++  ++  
Sbjct: 225 -------NKPTQSVKIYDPSAGTGTLLMALAHQI--------GTDSCTLYAQDISQKSLR 269

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKD 310
           +    +++     +      ++  +G+TL+    +     +  + +SNPPF   +  +  
Sbjct: 270 MLKLNLIL-----NDLTHSLRHAIEGNTLTNPYHSKDHKGKMDFIVSNPPFKLDFSNEHA 324

Query: 311 AVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLELPPNGGGRAAIVLSSS 363
            + +   +     F  G+P    +D S      LF  H  N L       G+ AI++ + 
Sbjct: 325 EISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSPK----GKGAIIVPTG 375

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
             F       E++I R L++  L+  ++ +P+ +F  T     +       + +   +V 
Sbjct: 376 --FISAKSGVENKIVRHLVDERLVYGVICMPSQVFANTGTNVSIIFFQKTPSAK---EVI 430

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGYRRIKVLR 482
           LI+A+ L         K+  +       IL+ + ++     F  ++ +     +   +  
Sbjct: 431 LIDASKLGEEYTENKNKKTRLRPSDMDLILETFQNKAPKSDFCALVSFDEITEKNYSLNP 490

Query: 483 PLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILKPMMQ 524
               +       +++ E +            L    Q+   +IL+ +  
Sbjct: 491 GQYFTIEDTSETISQAEFENLMQQYSSELASLFDESQNLQQEILETLKG 539


>gi|208434384|ref|YP_002266050.1| type I restriction enzyme M protein [Helicobacter pylori G27]
 gi|208432313|gb|ACI27184.1| type I restriction enzyme M protein [Helicobacter pylori G27]
          Length = 537

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 78/494 (15%), Positives = 171/494 (34%), Gaps = 65/494 (13%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           + A  E        + +           F   S  +     + +T     +   S S   
Sbjct: 84  KLAYDELLSYLFEKHFNDNDLYLKLDAIFNRISSNNAELFNTKSTDKTTIALFESISPYI 143

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGS 168
               +  +F+  +  L+K        KNF+  +   +          + I+E+L++ + +
Sbjct: 144 NEESKRANFTRAL--LDK-------LKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNN 194

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                  ++ TP  +  +   LL+D         P     +YDP+ GTG  L    + + 
Sbjct: 195 AGGGKYAEYYTPLSIASIIAKLLIDE--------PTQNVKIYDPSAGTGTLLMALAHQI- 245

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                         + Q++  ++  +    +++  L    R        +G+TL+    +
Sbjct: 246 -------GTNSCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHS 293

Query: 289 GK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LF 338
            +   +  + +SNPPF   +  +   + +   +     F  G+P    +D S      LF
Sbjct: 294 KECHGKMDFIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLF 348

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             H  N L       G+ AI++ +   F       E++I R L++  L+  +V +P+ +F
Sbjct: 349 FQHCLNMLSNK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVVCMPSQVF 402

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T     +       + +   +V LI+A+ L         K+  +       IL+ + +
Sbjct: 403 ANTGTNVSIIFFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRTSDIDLILETFHN 459

Query: 459 RE-NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPL 510
           +     F  ++ +     +   +      +       +++ E +            L   
Sbjct: 460 KTPKADFCALVSFDEITEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDE 519

Query: 511 HQSFWLDILKPMMQ 524
            QS   +IL+ +  
Sbjct: 520 SQSLQQEILETLKG 533


>gi|207722056|ref|YP_002252494.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2]
 gi|206587230|emb|CAQ17814.1| typeIrestriction enzyme m protein [Ralstonia solanacearum MolK2]
          Length = 481

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 108/312 (34%), Gaps = 50/312 (16%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +    LL K+ +    I L        V   +Y+ L+ R           F TPR +V 
Sbjct: 119 TMPTPALLAKVVQQLDAIPL----HRRDVRGAVYDALLGRIPLVG--QGGRFHTPRHIVR 172

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV 241
               L            P    TL DP  GTG FL  A  ++           +      
Sbjct: 173 FMVEL----------TRPDPSDTLCDPAAGTGSFLAAAGEYLRREHPGLLHDARQSVHFH 222

Query: 242 ---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297
               HG E++     +    +L+  +E         +++    L+  D      +   L+
Sbjct: 223 HGMFHGYEIDRAMLRIGSMNLLLHGVEG-------PDLRDHDALAPTDANEAGAYSLVLA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           +PPF    +      +  H+            +     +LFL    + L+     GGRAA
Sbjct: 276 HPPFTGDVDHGSVDPDLLHRV-----------RTRKAELLFLARCLHLLKP----GGRAA 320

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
           +++    LF   +G     +RR L+EN  +E ++ LP  +F     I T + + +   T 
Sbjct: 321 VIVPDGVLF--GSGLAHRTLRRMLVENHRLEGVIKLPAGVFRPYAGIGTAILLFTRTDTG 378

Query: 417 ERRGKVQLINAT 428
              G V   +  
Sbjct: 379 -GTGHVWFYDLR 389


>gi|83746140|ref|ZP_00943194.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum UW551]
 gi|207741830|ref|YP_002258222.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609]
 gi|83727106|gb|EAP74230.1| Type I restriction-modification system methylation subunit
           [Ralstonia solanacearum UW551]
 gi|206593214|emb|CAQ60141.1| typeIrestriction enzyme m protein [Ralstonia solanacearum IPO1609]
          Length = 481

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 108/312 (34%), Gaps = 50/312 (16%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +    LL K+ +    I L        V   +Y+ L+ R           F TPR +V 
Sbjct: 119 TMPTPALLAKVVQQLDAIPL----HRRDVRGAVYDALLGRIPLVG--QGGRFHTPRHIVR 172

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV 241
               L            P    TL DP  GTG FL  A  ++           +      
Sbjct: 173 FMVEL----------TRPDPSDTLCDPAAGTGSFLAAAGEYLRREHPGLLHDARQSVHFH 222

Query: 242 ---PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLS 297
               HG E++     +    +L+  +E         +++    L+  D      +   L+
Sbjct: 223 HGMFHGYEIDRAMLRIGSMNLLLHGVEG-------PDLRDHDALAPTDANEAGAYSLVLA 275

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           +PPF    +      +  H+            +     +LFL    + L+     GGRAA
Sbjct: 276 HPPFTGDVDHGSVDPDLLHRV-----------RTRKAELLFLARCLHLLKP----GGRAA 320

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
           +++    LF   +G     +RR L+EN  +E ++ LP  +F     I T + + +   T 
Sbjct: 321 VIVPDGVLF--GSGLAHRTLRRMLVENHRLEGVIKLPAGVFRPYAGIGTAILLFTRTDTG 378

Query: 417 ERRGKVQLINAT 428
              G V   +  
Sbjct: 379 -GTGHVWFYDLR 389


>gi|329730505|gb|EGG66894.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 240

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 59/258 (22%), Positives = 106/258 (41%), Gaps = 21/258 (8%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 1   IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKAD 55

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 56  FAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 108

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D
Sbjct: 109 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIID 162

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y  +E   K+S     +        +  P R     ++     L+      K      +
Sbjct: 163 TYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIA 221

Query: 514 FWLDILKPMMQQIYPYGW 531
                +   ++++     
Sbjct: 222 EIEQEINAYLKELGVLKD 239


>gi|308182610|ref|YP_003926737.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4]
 gi|308064795|gb|ADO06687.1| Type I restriction enzyme M protein [Helicobacter pylori PeCan4]
          Length = 543

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/549 (15%), Positives = 186/549 (33%), Gaps = 92/549 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
              ++  +I    L + L       +     +      +  D + F K     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCD-----KFEFFFEQEFPNQTIRDYKDFKKEEREDFFITLSD 85

Query: 87  S----------LSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127
           +          L+ L   +  +N     L++     S N   +F       T   L    
Sbjct: 86  NKLPKLAYDELLNYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTTSTDKTTIALFESV 145

Query: 128 -----EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173
                E++        L    KNF+  +   +          + I+E+LI+ + +     
Sbjct: 146 SQYVNEESKRANFTRALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLIKDYNNAGGGK 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL+          P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLVSE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++     +      K   +G+TL+    + +   
Sbjct: 252 --GTDSCTLYAQDISQKSLRMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKEFKG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           +  + +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  
Sbjct: 305 KMDFIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AIV+ +   F       E++I R L++  L+  +V +P+ +F  T  
Sbjct: 360 NMLSDK----GKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVVCMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
              +       + +   +V LI+A+ L         K+  +       IL+ + ++ +  
Sbjct: 414 NVSIIFFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRPSDMDLILETFQNKTKKA 470

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFW 515
            F  ++ +     +   +      +       +++ E +            L    QS  
Sbjct: 471 DFCTLVSFDEIIEKNYSLNPGQYFTIEDTSETISQAEFENLMQQYSSELTSLFDESQSLQ 530

Query: 516 LDILKPMMQ 524
            +IL+ +  
Sbjct: 531 QEILETLKG 539


>gi|300689755|ref|YP_003750750.1| typeI restriction enzyme (hsdM) [Ralstonia solanacearum PSI07]
 gi|299076815|emb|CBJ49425.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           PSI07]
          Length = 481

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/307 (20%), Positives = 105/307 (34%), Gaps = 52/307 (16%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL ++ +    I L        V   +YE L+ R           F TPR +V     L 
Sbjct: 125 LLARVVQLLDAIPL----HRRDVKGAVYESLLGRIALAAQGRP--FHTPRHIVRFMVEL- 177

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILV---PHG 244
                      P    TL DP  GTGGFL  A  ++           +          HG
Sbjct: 178 ---------TRPDPSDTLCDPAAGTGGFLAAAGEYLRREHPGLLHDARQSAHFHHGMFHG 228

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPFG 302
            E++     +    +L+  +E         +++    L+      +   Y   L++PPF 
Sbjct: 229 YEIDRAMLRIGSMNLLLHGVEG-------ADLRDCDALAA-RHADEAGAYSLILTHPPFT 280

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              +      +              L +     +LFL    + L      GGRAA+++  
Sbjct: 281 GDVDHGSADPDLLR-----------LVRTRKAELLFLARCLHLLRP----GGRAAVIVPD 325

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421
             LF      G   +RR L+E+  +E ++ LP  +F     I T + + +   T    G 
Sbjct: 326 GVLFGSGIARG--TLRRMLVEDHKLEGVIKLPGGVFRPYAGIGTAILLFTRTDTG-GTGH 382

Query: 422 VQLINAT 428
           V   +  
Sbjct: 383 VWFYDLR 389


>gi|227892723|ref|ZP_04010528.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
 gi|227865500|gb|EEJ72921.1| type I site-specific deoxyribonuclease [Lactobacillus ultunensis
           DSM 16047]
          Length = 516

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 146/447 (32%), Gaps = 77/447 (17%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVM---------------SNIYEHLIRRF 166
             I +L     L K+      I    D +    +                ++YE+L+ + 
Sbjct: 121 DAIFKLPTPEFLAKVVDELDDIYATMDKIRKNEIQSTGKNERFDKSDVQGDLYEYLLSKL 180

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++ +   L+          +P     + DP CGT GFL  A  +
Sbjct: 181 STAG--RNGQFRTPRHIIKMMVELM----------NPTPDDKIADPACGTSGFLVTAAEY 228

Query: 227 VADCGSHHKI----------PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           + +     K               +  G +++     +    M+   +          NI
Sbjct: 229 LKNDREKEKAIFYSKEKKAYYKSSMFTGYDMDRTMLRIGAMNMMTHGI-------TDPNI 281

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           Q   +LS        +   L+NPPF  K   D D V                 K      
Sbjct: 282 QYKDSLSDQNIDADEYSLVLANPPF--KGSLDYDTVSDSLLKVC---------KTKKTE- 329

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              +            GGR A ++    LF   +      IR+ L+E + +EA++++P+ 
Sbjct: 330 ---LLFLTLFLRMLKIGGRCACIVPDGVLF--GSSRAHKTIRKQLVEGNRLEAVISMPSG 384

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +F     ++T + I +         KV   + T       +   KR  +++D    I++ 
Sbjct: 385 VFKPYAGVSTAVLIFTKT-NHGGTDKVWFYDMTADGY---SLDDKRTKVDEDDIPDIINR 440

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           + + +  K  +  D   F  ++  V      ++ L       +       K  P+     
Sbjct: 441 FKNLDKEKDRKRTDKSFFVDKKEIVD----NNYDLSINRYKEI-------KYVPVKYPPT 489

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKS 542
            DIL  +M+           +K  ++ 
Sbjct: 490 KDILAEIMKLDEEANKDLQELKNMLEK 516


>gi|223938811|ref|ZP_03630699.1| N-6 DNA methylase [bacterium Ellin514]
 gi|223892509|gb|EEF58982.1| N-6 DNA methylase [bacterium Ellin514]
          Length = 811

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 135/400 (33%), Gaps = 69/400 (17%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + IF++               L    K                + + +E+L+   GS+  
Sbjct: 101 REIFKNAYLP-----YRDPETLKAFLKIIDEFTYDHSER----LGDAFEYLLSVLGSQG- 150

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A  F TPR ++    +++           P    T+ DP CGT GFL  +  H+    
Sbjct: 151 -DAGQFRTPRHIIDFIVSVV----------DPKKNETVLDPACGTAGFLISSYKHILRAN 199

Query: 232 SHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +  +    L             G ++ P+   + +  + +             +I +  T
Sbjct: 200 TDARGNSKLTPDDRGRLAKNFKGYDISPDMVRLSLVNLYLHGF-------TDPHIYEYDT 252

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L+ +    +     L+NPPF    +      +         RF       +   +LF+ +
Sbjct: 253 LTSEERWNEFADVILANPPF-MSPKGGIKPHK---------RFSV---PSNRSEVLFVDY 299

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
           +   L       GRA I++    +F          +R  LL+  LI  I++LP+ +F   
Sbjct: 300 MLEHL----TAHGRAGIIVPEGIIFQSGT--AYRRLREVLLKESLI-GIISLPSGVFQPY 352

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           + + T + IL  R   + R  V   +   +     + G KR +   +    ++  Y +  
Sbjct: 353 SGVKTSILILDKR-VAKSRPHVLFSDIRAIGV---SLGVKRTVTERNDLPFVVQDYAAYH 408

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            G     L   +F   R  +       +I        +EA
Sbjct: 409 EG---TELSRHSFLVERNAI---AANDYIFSAERYRPVEA 442


>gi|293372411|ref|ZP_06618795.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CMC 3f]
 gi|292632594|gb|EFF51188.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CMC 3f]
          Length = 553

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 166/491 (33%), Gaps = 79/491 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
              ++  +I    L + L       L+ T+S + +K +         E+          +
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNTKSDIAKKLIGDVKWETAYENLSDDERMLIQS 85

Query: 83  TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135
                +  L   +   NL        +   F      I E + D  ST         L++
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQSKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145

Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176
                             +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDTAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 252

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------ 290
                   Q++   ++ +         L  +       N  QG TL              
Sbjct: 253 -DRCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVNPYHKSDGGQQLR 306

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343
           +F + +SNPPF   +   ++ +          RF  G+P        SM     F+ H+ 
Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L+      G+ AIV+ +   F       E++I   ++++ ++   V++P+++F  T  
Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKIVYGCVSMPSNVFANTGT 415

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSREN- 461
              +             KV LI+A+ L    ++  G K+  +ND++  +I+  +  +E  
Sbjct: 416 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAV 472

Query: 462 GKFSRMLDYRT 472
             FS  + Y  
Sbjct: 473 DDFSVAVTYDE 483


>gi|308063301|gb|ADO05188.1| type I restriction enzyme M protein [Helicobacter pylori Sat464]
          Length = 543

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/544 (15%), Positives = 184/544 (33%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-------------PTRSAVREKYLAFGGSNID----- 68
              ++  +I    L + L    E               +    E+   F  + ID     
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEDFFITLIDKRLPK 90

Query: 69  --LESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKAI--FEDF--DFS 121
              +  +       +N ++  L   +      +N      + S +   I  FE      +
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTKSTDETNIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R     +L    KNF   +   +          + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  + ++   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIANIIAKLLVNE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    +     +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKDLKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AI++ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSVI 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                K      KV LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FF---KKTPSANKVVLIDASKLGEECTENKNKKTRLRGSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|254390385|ref|ZP_05005602.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197704089|gb|EDY49901.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 814

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 123/355 (34%), Gaps = 47/355 (13%)

Query: 109 DNAKAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF- 166
           +  +     FDF+  I    E A L        +              + +++ L+  + 
Sbjct: 201 EAYQEALGLFDFAPRIAGHRETADL--------ADFVFQQVPARREECAAVFDLLLDHYR 252

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            ++      +F TPR V      LL          +      ++DP C  G  LT     
Sbjct: 253 STQGRRDGGEFFTPRSVARTMARLLAA--------AGHPPERVHDPFCRAGEVLTAL--- 301

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+  +  +        G +      A+    + +   E    R     ++     +   
Sbjct: 302 LAELPAQAEPLVTGSAPGVD----ALALARMNLTLHGAEEAALRHR---MEIEDPFAGPG 354

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             G    +  +NPPFG K   +             GR  P  P  S G + +L H+   L
Sbjct: 355 -EGHGADWVATNPPFGFKLSDEA--------RERWGRPWPYGPPGSRGDLAWLQHVVESL 405

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GGRAA+V+ +   F G        +R  ++ + ++E ++ LP  LF  T I   
Sbjct: 406 AP----GGRAAVVMPNGAGFAGGRAQ---TVRARMVHDGVVECVMELPPHLFSDTAIPVS 458

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +W+L+  +   RR  V  ++ + L       G   R   D     ++  Y +  N
Sbjct: 459 IWMLTRPRPGTRRRDVLFVDGSALGAMT---GPASREFTDADIAALVGAYSTWRN 510


>gi|294813863|ref|ZP_06772506.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|326442281|ref|ZP_08217015.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294326462|gb|EFG08105.1| N-6 DNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 752

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 123/355 (34%), Gaps = 47/355 (13%)

Query: 109 DNAKAIFEDFDFSSTI-ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF- 166
           +  +     FDF+  I    E A L        +              + +++ L+  + 
Sbjct: 139 EAYQEALGLFDFAPRIAGHRETADL--------ADFVFQQVPARREECAAVFDLLLDHYR 190

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            ++      +F TPR V      LL          +      ++DP C  G  LT     
Sbjct: 191 STQGRRDGGEFFTPRSVARTMARLLAA--------AGHPPERVHDPFCRAGEVLTAL--- 239

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +A+  +  +        G +      A+    + +   E    R     ++     +   
Sbjct: 240 LAELPAQAEPLVTGSAPGVD----ALALARMNLTLHGAEEAALRHR---MEIEDPFAGPG 292

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             G    +  +NPPFG K   +             GR  P  P  S G + +L H+   L
Sbjct: 293 -EGHGADWVATNPPFGFKLSDEA--------RERWGRPWPYGPPGSRGDLAWLQHVVESL 343

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 GGRAA+V+ +   F G        +R  ++ + ++E ++ LP  LF  T I   
Sbjct: 344 AP----GGRAAVVMPNGAGFAGGRAQ---TVRARMVHDGVVECVMELPPHLFSDTAIPVS 396

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +W+L+  +   RR  V  ++ + L       G   R   D     ++  Y +  N
Sbjct: 397 IWMLTRPRPGTRRRDVLFVDGSALGAMT---GPASREFTDADIAALVGAYSTWRN 448


>gi|257784006|ref|YP_003179223.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
 gi|257472513|gb|ACV50632.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
          Length = 506

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/499 (14%), Positives = 161/499 (32%), Gaps = 85/499 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +R L+      +    E+        I  E              E    ++ +    
Sbjct: 35  LMFIRSLDD-----KELESERMEEL---GIPQEYLFPQTSEG----QEMRWCSIKNMAPE 82

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPDTVPDR--V 154
             LE+         K + +D  F+ ++            + K  SGI+   +   +    
Sbjct: 83  KMLEAIRDKVFPFIKTLHDDTPFARSMRDATFGINNPRTLQKAVSGIDSLMNDFENDMDD 142

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + ++YE+++ +  +        F TP+ +  +  A++           P     + DP  
Sbjct: 143 LGDLYEYMLSKLSTAG--TNGQFRTPKHIRDMMVAMV----------DPRPGERICDPAM 190

Query: 215 GTGGFLTDAMNHV--------------------ADCGSHHKIPPILVPHGQELEPETHAV 254
           GT GFL  A +H+                     D   +          G E +     +
Sbjct: 191 GTAGFLISAADHLRNDSAMKDDDWTVFAGEAAEKDADGNVVAEGRHQFSGGETDQTMFRI 250

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               +++  +          +I+   ++SK   T  ++   L+NPPF    + +  A   
Sbjct: 251 SAMNLMLHGI-------SQPDIKLVDSVSKQNTTSDKYDLVLANPPFTGSVDTEDIAPSL 303

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           +            +       +LF+      L++    GGR A ++ +  LF   +    
Sbjct: 304 KA-----------ICNSKQTELLFVALFLRMLKV----GGRCACIVPNGVLFRTNSK-AY 347

Query: 375 SEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLW- 431
            ++R+ L++N  + AI+ +P+ +F  +   ++T + + +         KV L N      
Sbjct: 348 RQLRQELVDNQQLRAIIYMPSGVFKPYS-GVSTAVLVFTKT-NAGGTDKVWLYNMEGDGY 405

Query: 432 --TSIRNEGKKRRIIND--------DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
                R+       + D        +   +      S    K   + +   F + +    
Sbjct: 406 TLDDKRDIDDAHNDVPDILERWAHLESEEKRDRKQKSFLVSKQDIIDNDYDFSFNKYVET 465

Query: 482 RPLRMSFILDKTGLARLEA 500
              R+ +   +  +A L+ 
Sbjct: 466 EYERIEYPPTEQIVAELDE 484


>gi|77413781|ref|ZP_00789961.1| N-6 DNA Methylase family [Streptococcus agalactiae 515]
 gi|77160143|gb|EAO71274.1| N-6 DNA Methylase family [Streptococcus agalactiae 515]
          Length = 487

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 148/430 (34%), Gaps = 52/430 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       + Y +    ++   ++           +   L    +    
Sbjct: 33  LLFLK-IYDSRELVWELEEDDYESIIPEDLKWRNWAHAEKGE-QVLTGDDLLDFVNNRLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITPNMPIRKSIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   S  +    +F TPR        +L           P +  T+ D  CGTG
Sbjct: 150 IYEKILKDIQSAGNS--GEFYTPRAATDFIAEML----------DPKLGETMADLACGTG 197

Query: 218 GFLTDAMNHVADCGSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N+++      +          G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNYLSKQRKTSEDIQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG               +     F   L + S
Sbjct: 251 IIHGNTLEKNVREYTDDEKFDLIMMNPPFGGSE-----------LDTIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + ++  L+E   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKEKLVEEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E+    +L    D+    +N   K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEQTWFYRL----DMPEGYKNF-SKTKPMKSEHFNP 406

Query: 452 ILDIYVSREN 461
           + + + SRE 
Sbjct: 407 VREWWTSREE 416


>gi|317179168|dbj|BAJ56956.1| Type I restriction enzyme M protein [Helicobacter pylori F30]
          Length = 543

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/544 (15%), Positives = 181/544 (33%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77
              ++  +I    L + L    E          T    ++                ++  
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQKFPNQTIQDYKDFNEEEKEDFFLTLIDKRLPK 90

Query: 78  YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA------ 130
            ++ +   Y      + N     L+      S N   +F       T   L K+      
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDIIFNRISSNNAELFNTTSTDKTTIALFKSVSQYIN 150

Query: 131 ---------GLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
                     +L    KNF   +   +          + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    + +   +  Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAIVVPTG--FISAKSGIENKIVRHLVDKKLVYGVICMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 +E+    V LINA+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFKKTPSEDG---VVLINASKLGEEYTENKNKKTRLRGSDIDLILETFQNKTQKAGFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|270643375|ref|ZP_06222163.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270317275|gb|EFA28841.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 189

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 24/200 (12%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M IR ++ D  +  +       + ++     K+  + ++NPPF               
Sbjct: 1   MNMAIRGIDYDFGKHNA------DSFTQPQHIDKKMDFIMANPPFNIS-------DWWSE 47

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
              +  R+  G P   + +  +L H+   L       G+ A++L++  +      + E E
Sbjct: 48  SLADDPRWAYGTPPKGNANFAWLQHMIYHLSP----NGKMALLLANGSM--NSQTNNEGE 101

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ ++  DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A  +      
Sbjct: 102 IRKGIINADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDARQIGYMKDR 159

Query: 437 EGKKRRIINDDQRRQILDIY 456
                R    D   +IL  +
Sbjct: 160 V---LRDFTADDIAKILYRF 176


>gi|262403985|ref|ZP_06080540.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC586]
 gi|262349017|gb|EEY98155.1| type I restriction-modification system DNA-methyltransferase
           subunit M [Vibrio sp. RC586]
          Length = 512

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 146/420 (34%), Gaps = 75/420 (17%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + +    +          V  +IYE+L+ +     +     F TPR ++ +   ++    
Sbjct: 123 VLRAAVDMVNDLPLDKSDVKGDIYEYLLSKLS--SAGINGQFRTPRHIIDMMVEMI---- 176

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSH 233
                        + DP CGT GFL+ +M ++                           +
Sbjct: 177 ------DVQPTDVICDPACGTAGFLSRSMEYLTRTHTSAESIYQDEDGNPVYTGDLLHEY 230

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTG 289
                  +  G + +     V    ML+  +        + NI    +L+K         
Sbjct: 231 QDHINTKMFWGFDFDNTMLRVSAMNMLLHGV-------SAANITYQDSLNKSFLGQPQEE 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   L+NPPF  K   D+ +V  +            + K     +LF+  +   L+  
Sbjct: 284 NFFDKILANPPF--KGSLDEQSVNPK---------VLSMVKTKKTELLFVALILRMLK-- 330

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408
              GGR+A ++    LF   + S   ++R+ L++++ +EA+++LP+ +F     ++T + 
Sbjct: 331 --LGGRSATIVPDGVLF--GSSSAHQDLRKTLIDHNQLEAMISLPSGVFKPYAGVSTGIL 386

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           I +   +      V   + T       +   KR  I D+     L  +        +   
Sbjct: 387 IFTKGGS---TDNVLFYDMTADGY---SLDDKRNPIKDNDIPDALAKWKRYNALYQANDQ 440

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP-LHQSFWLDILKPMMQQIY 527
                 +         + +F++    +   + D++  +    ++Q    +  K ++ ++ 
Sbjct: 441 QALKAEFGDKT-----QKAFMVSADEIKAQKYDLSINRYKEVVYQEESYEDPKVILGKLK 495


>gi|322379268|ref|ZP_08053654.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
 gi|321148305|gb|EFX42819.1| type I restriction enzyme M protein (hsdM) [Helicobacter suis HS1]
          Length = 301

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 101/300 (33%), Gaps = 46/300 (15%)

Query: 3   EFTGSAAS-LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAV 55
           + + +    L   IW  A+ L G     DF + +L   L R L   L         +   
Sbjct: 8   QTSSTHRDHLFKAIWNIADKLRGAVDGWDFKQFVLGMILYRYLSENLANYINETEQKRDA 67

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST--------LGSTNTRNNLESY---I 104
              Y        +L   + +    FY                 L +      L      I
Sbjct: 68  SFNYAKLKDEKANLAKEMLLEEKGFYIPPSGLFENVIENLGPLLKAGKLNTTLNDIFKNI 127

Query: 105 ASFS------DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD- 152
            + S      +N K +F D D +S   +L      K   + ++ +  + +++        
Sbjct: 128 EASSLQSEAQENFKGLFADLDMNS--DKLGNGVKSKNENIARLLEGVASMQISHYQKNGI 185

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V  + YE L+  + S   +   +F TP +V  L T L++    ++ K        +YDP
Sbjct: 186 DVFGDAYEFLMGMYASTAGKSGGEFFTPPEVSKLLTTLVIHKQKSINK--------VYDP 237

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L      +                GQE+   T+ +C A ML+  ++ D     
Sbjct: 238 CCGSGSLLLQFAKILGVENIKQG------FFGQEINQTTYNLCRANMLLHNVDYDKFHIN 291


>gi|167627756|ref|YP_001678256.1| N-6 DNA methylase family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597757|gb|ABZ87755.1| N-6 DNA methylase family [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 315

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 123/312 (39%), Gaps = 54/312 (17%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                + +F TPR +V     ++          +P   +T+YDP  GT GFL DA  H+ 
Sbjct: 3   SDGGNSGEFYTPRPLVKAIVDVV----------NPQTGQTVYDPAAGTCGFLIDAYEHMY 52

Query: 229 DC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                 +  K        G+E  P ++ + V  M++  +        S NI + +TL KD
Sbjct: 53  SKELSTTQLKFLNEETFFGKEKTPLSYVMGVMNMILHGI-------TSPNINKANTLVKD 105

Query: 286 ---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMH 341
              L    R+   L+NPPFG K +                      P  S+   +LFL H
Sbjct: 106 IRSLEEKDRYDIILANPPFGGKEKATIQTNF---------------PIKSNATELLFLQH 150

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
           +   L+     GGR  +V+    LF  +  +    +++ LLEN  +  IV+LP  +F   
Sbjct: 151 IYKSLK----LGGRCGVVVPEGVLF--QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPY 204

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           + + T +        E     +     T  +        K + I  +   + L+I+ SR+
Sbjct: 205 SGVKTNVIFFDR---EGSTTDIFYYEITPPYKLT-----KNKPIQFEHFAEFLEIWQSRK 256

Query: 461 NGKFSRMLDYRT 472
             + S +++   
Sbjct: 257 LTENSWIVNVAD 268


>gi|329724457|gb|EGG60965.1| N-6 DNA Methylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 240

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 21/258 (8%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+   TL    F G  F   ++NPP+  KW  D      E  +G        L   S   
Sbjct: 1   IRNDDTLENPAFLGNTFDAVIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKAD 55

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALP 394
             F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP
Sbjct: 56  FAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLP 108

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            ++F+ T+I T + +   +K  ++   V  I+A++ +      GK +  ++D Q  +I+D
Sbjct: 109 ANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIID 162

Query: 455 IYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
            Y  +    K+S     +        +  P R     ++     L+      K      +
Sbjct: 163 TYKRKATIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIA 221

Query: 514 FWLDILKPMMQQIYPYGW 531
                +   ++++     
Sbjct: 222 EIEQEINAYLKELGVLKD 239


>gi|317181780|dbj|BAJ59564.1| Type I restriction enzyme M protein [Helicobacter pylori F57]
          Length = 543

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/544 (15%), Positives = 178/544 (32%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77
              ++  +I    L + L    E          T    ++                ++  
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFKQEFPNQTIQDYKDFNEEEKEDFFLTLIDKRLPK 90

Query: 78  YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
            ++ +   Y      + N     L++     S N   +F       T   L         
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTKSTDETTIALFESVSQYIN 150

Query: 128 ---EKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              ++A     +       +         +       + I+E+L++ + S+      ++ 
Sbjct: 151 EESKRANFTRALLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTN 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++       ML   L  +      K   +G+TL+    + +   +  Y 
Sbjct: 255 SCTLYAQDISQKSLK-----MLKLNLILNNLTHSLKYAIEGNTLTNPYHSKECKGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNML-- 362

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             +  G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 363 --SDNGKGAIVVPTG--FISAKSGIENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVI 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                K      +V LI+A+ L         K+  + +     IL  + ++ +   F  +
Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKTRLRESDIDLILKTFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|261837872|gb|ACX97638.1| type I restriction enzyme M protein [Helicobacter pylori 51]
          Length = 543

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/544 (15%), Positives = 177/544 (32%), Gaps = 82/544 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALE---------PTRSAVREKYLAFGGSNIDLESFVKVAG 77
              ++  +I    L + L    E          T    ++                ++  
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPNQTIQDYKDFNEEEKEGFFLKLIDKRLPK 90

Query: 78  YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFE---------------DFDFS 121
            ++ +   Y      + N     L++     S N   +F                    +
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTKSTDETTIALFESISQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R     +L    KNF   +   +          + I+E+L++ + S+      ++ 
Sbjct: 151 EESKRANFTRVLLDKLKNFDFKQAFLNLQNQQGYDFFAPIFEYLLKDYNSDKGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    + +      Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKECKGEMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSD 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T       
Sbjct: 365 E----GKGAIVVPTG--FISAKSGIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSAI 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 +E    +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFKKTPSE---DEVILIDASKLGEEYTENKNKKTRLKGSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +              +++ E +            L    QS   +IL+
Sbjct: 476 VSFDEIIEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PMMQ 524
            +  
Sbjct: 536 TLKG 539


>gi|325958864|ref|YP_004290330.1| N-6 DNA methylase [Methanobacterium sp. AL-21]
 gi|325330296|gb|ADZ09358.1| N-6 DNA methylase [Methanobacterium sp. AL-21]
          Length = 505

 Score =  148 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/524 (16%), Positives = 172/524 (32%), Gaps = 93/524 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++RL+          R K      S  + ES        F + S+   S   +    
Sbjct: 35  LIYMKRLDD-------DERAKEQNAKFSEEEYESL-------FKDCSDCRWSKWNNMAAD 80

Query: 98  NNLESYIASFSDNAKAIFEDFDF-----SSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             L           + + ++           +  +    LL +       + +    +  
Sbjct: 81  EMLIHVREKVFPFLRDLGDENSLYRRYMKDAVFAIPTGSLLVETTSIIDEMHIKEQNLD- 139

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +IYE+L+    +        F TPR ++ +   ++           P +   + DP
Sbjct: 140 -TKGDIYEYLLSELKTSGK--NGQFRTPRHIIQMMVKIV----------DPKVNEIICDP 186

Query: 213 TCGTGGFLTDAMNHVADCGSHHK------------------------IPPILVPHGQELE 248
            CGT GFL ++  H+    +  +                                G + +
Sbjct: 187 ACGTAGFLVNSYRHILKANTSQELIKIDDEGQEYNFKGDKLSKSEYLALKNNSLFGFDFD 246

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
                + +  +++  +        +  I Q +T+S        F   L+NPPF     KD
Sbjct: 247 QTMVRISLMNLMMHGI-------SNPQIDQINTISMRYNQNPNFDVVLANPPFKGSINKD 299

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +   +          F     K     +LFL  + N L    N GGR A+++    LF  
Sbjct: 300 ELNDD----------FSINTTKT---EILFLELMYNIL----NIGGRCAVIVPQGVLF-- 340

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINA 427
                   IR+ LLE+  ++A++++P+ +F     ++T + I +  +      KV   + 
Sbjct: 341 GNSRAHKSIRKKLLEDCRLDAVISMPSGVFRPYAGVSTGILIFTKGEP---TAKVGFYDM 397

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
                +      KR  I  D +  I DI    +N +     D +   +  +         
Sbjct: 398 EADGYT---LDDKRTFI--DGKGDIPDIIEKFKNSEPELFQDRKAKHFY-VPYEEIKEND 451

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
           + L  +    +E D    +   + +   L++ K +++ +    +
Sbjct: 452 YSLSISNYKEIEYDEIEYESPDVIKEKILELEKKIIKGLEELDF 495


>gi|315586430|gb|ADU40811.1| type I restriction enzyme M protein [Helicobacter pylori 35A]
          Length = 543

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/547 (15%), Positives = 182/547 (33%), Gaps = 75/547 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECALE-----PTRSAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E            + Y  F     +      +      
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFLFEQEFPDQKIQDYKDFNEEEKEDFFLTLIDERLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARLEKA------ 130
              +  LS L   +  +N     L++     S N   +F       T   L ++      
Sbjct: 91  LAYDDLLSYLFEKHFNDNDLHLKLDTIFNRISSNNAELFNTTSTDETTIALFESISQYIN 150

Query: 131 ---------GLLYKICKNFSGIELHPD---TVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                     +L    KNF   +   +          + I+E+L++ + +  +    ++ 
Sbjct: 151 EESKRANFTRVLLGKLKNFDFKQAFLNLQNQQSYDFFAPIFEYLLKDYNNAGTGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQNVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++     +      K   +G+TL+    + K      Y 
Sbjct: 255 SCTLYAQDISQKSLKMLKLNLIL-----NDLTHSLKYAIEGNTLTNPYHSKKCKGEMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLNN 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AIV+ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAIVVPTG--FISAKSGVENKIVRHLVDEKLVYGVICMPSQVFANTGTNVSVI 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                K      +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FF---KKTPSANEVVLIDASKLGEEYTENKNKKMRLRGSDIDLILETFQNKTQKAGFCTL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           + +     +   +      +       +++ E +   ++ S    S + +      + + 
Sbjct: 476 VSFDEIIEKNYSLNPGQYFTIEDTNEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 528 PYGWAES 534
             G    
Sbjct: 536 TLGNLNY 542


>gi|294792926|ref|ZP_06758072.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
 gi|294455871|gb|EFG24235.1| type I restriction-modification system, M subunit [Veillonella sp.
           6_1_27]
          Length = 492

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 131/350 (37%), Gaps = 49/350 (14%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+     ++   LL ++      I+   D        +IYE +++    + +  + +F T
Sbjct: 114 FADANNYMKDGVLLRQVINVIDDIDFS-DYDESHAFGDIYETILKEL--QSAGSSGEFYT 170

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--HKIP 237
           PR V     A++          +P +   + D  CGTGGFL   +  +         +  
Sbjct: 171 PRAVTDFMAAMI----------NPQVGEVMADFACGTGGFLISWLKELHKKVETVADEEA 220

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHY 294
                +G E +   + + +  +L+  ++       +  I   ++L KD        +F  
Sbjct: 221 YSSSIYGIEKKQFPYMLAITNLLLHDVD-------TPRIFHDNSLVKDVLDYTDKDKFDV 273

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPP+G   + D  +            F   L       + F+  +  +L+      G
Sbjct: 274 ILMNPPYGGSEKNDVKSH-----------FPADLASSETADL-FMSVIMYRLKNQ----G 317

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           RAA++L    LF     + +  I++ LL    +  I+ LP+ +F   T+I T +    N 
Sbjct: 318 RAAVILPDGFLF--GTDNAKVNIKKKLLNEFNLHTIIRLPSSVFSPYTSITTNVLFFDNT 375

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              +       I   D+    ++   K + +  +    +++ + +R   +
Sbjct: 376 GETKETW----IYRLDMPEGYKHF-SKTKPMKLEHFEPVINWWNNRTEIE 420


>gi|217031669|ref|ZP_03437174.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128]
 gi|298736617|ref|YP_003729143.1| type I restriction enzyme M protein [Helicobacter pylori B8]
 gi|216946869|gb|EEC25465.1| hypothetical protein HPB128_21g227 [Helicobacter pylori B128]
 gi|298355807|emb|CBI66679.1| type I restriction enzyme M protein [Helicobacter pylori B8]
          Length = 543

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/546 (14%), Positives = 177/546 (32%), Gaps = 75/546 (13%)

Query: 27  KHTDFGKVILPFTLLRRLECAL---------EPTRSAVREKYLAFGGSNIDLESFVKVAG 77
              ++  +I    L + L               T    ++                K+  
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFFFETKFPNKTIQDYKDFNEEEKEIFFTDLYDNKLPK 90

Query: 78  YSFYNTSEYSLSTLGSTN-TRNNLESYIASFSDNAKAIFED----------FD-----FS 121
            ++     Y      + N     L++     S N   +F            F+      +
Sbjct: 91  LAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESVSQYIN 150

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
               R      L    KNF+  +   +          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTKALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL+          P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVSE--------PTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++  L    R        +G+TL     + +   +  + 
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLINPYHSKECHGKMDFI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSN 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AI++ +   F       E++I R L+   L+  +V +P+ +F  T     + 
Sbjct: 365 K----GKGAIIVPTG--FISAKSGVENKIIRHLVNERLVYGVVCMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 + +   +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRTSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           + +     +   +      +       +++ E +   ++ S    S + +      + + 
Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSEKISQEEFENLMQQYSSELTSLFDESQNLQQEILE 535

Query: 528 PYGWAE 533
             G   
Sbjct: 536 TLGNLN 541


>gi|114568715|ref|YP_755395.1| N-6 DNA methylase [Maricaulis maris MCS10]
 gi|114339177|gb|ABI64457.1| N-6 DNA methylase [Maricaulis maris MCS10]
          Length = 508

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 122/337 (36%), Gaps = 76/337 (22%)

Query: 127 LEKAGLLYK---ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           ++ A L+ +   +      I             ++YE+L+ +  +        F TPR +
Sbjct: 109 MKDAQLMIQKPSLLVKAVSIVNDLPLTEGDTKGDLYEYLLSKLTTAG--INGQFRTPRHI 166

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--------------- 228
           + L   +L           P     + DP+CGTGGFL + M ++                
Sbjct: 167 IKLMVDML----------EPKPTDRISDPSCGTGGFLVNVMEYLLRAYTSPEAVIKETDP 216

Query: 229 ------------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
                           H       + HG + +     +    +++  ++       + +I
Sbjct: 217 ETGKTETLYPGDQLEGHWDHIKGDMFHGFDFDASMLRIAAMNLMLHGVD-------NPDI 269

Query: 277 QQGSTLS---KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               TLS    D F     + F   L+NPPF  K   D + V     +           K
Sbjct: 270 HYQDTLSGSFTDNFQASATEGFDVILANPPF--KGSLDYEDVHPNLLSAV---------K 318

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL+ +   L+     GGR+A ++    LF   + +  + +R+ L++ + +EA+
Sbjct: 319 TKKTELLFLVLILRMLKP----GGRSATIVPDGVLF--GSSTAHTALRKKLIDQNQLEAV 372

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN 426
           ++LP+ +F     ++T + + S          V   +
Sbjct: 373 ISLPSGVFKPYAGVSTGILVFSKGGETR---DVFFYD 406


>gi|323698910|ref|ZP_08110822.1| N-6 DNA methylase [Desulfovibrio sp. ND132]
 gi|323458842|gb|EGB14707.1| N-6 DNA methylase [Desulfovibrio desulfuricans ND132]
          Length = 554

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/588 (14%), Positives = 179/588 (30%), Gaps = 106/588 (18%)

Query: 3   EFTGSAASLANFIWK--NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--- 57
           E     + L N  W    +  L    +       I     ++RL+  L+  + A  E   
Sbjct: 7   ELKSKISQLWNKFWAGGISNPL-TAIEQ------ITYLLFMKRLDD-LDQKKQADAEWTG 58

Query: 58  -KYLAFGGSNIDLESFVKVAGYSFYNTSEYS-----LSTLGSTNTRNNLESYIASFSDNA 111
             Y +          F        Y    ++        + +     ++++ +  F  + 
Sbjct: 59  EPYTSKFEGLWIPPEFRGKEDEDKYAVDRHTLRWREFKHMQAEEMLQHVQTRVFLFLKDM 118

Query: 112 KAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHL 162
                +F     + +  + K  LL +  K    I    +            +  ++YE L
Sbjct: 119 NGATSNFTRHMENAVFIIPKPALLVEAVKTIDEIFEIMEKDSQEKGQAFQDIQGDVYEML 178

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +    +        F TPR ++ L   L+           P +   + DP CG+GGFL  
Sbjct: 179 LSEIATAGK--NGQFRTPRHIIKLMADLV----------RPQLGHRIADPACGSGGFLLG 226

Query: 223 AMNHV--------------------------ADCGSHHKIPPILVPHGQELEPETHAVCV 256
           A  ++                          A      +        G +++     + +
Sbjct: 227 AYQYIVTELAKKAGAKDLQPDEDGFVRTSVAAGLTEKAQAILQASLFGYDIDVTMVRLGL 286

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +++  ++         NI    TLSK       +   ++NPPF               
Sbjct: 287 MNLMMHGID-------EPNIDYKDTLSKSYLEEGEYDIVMANPPFTGSI----------D 329

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           K            K     +LF+ +    L+     GG A +++    LF   +G     
Sbjct: 330 KGDINENLTVATTKT---ELLFVDNFYRLLKK----GGTACVIVPQGVLF--GSGKAFKA 380

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN------RKTEERRGKVQLINATD 429
           +R  L++   ++A++ +P+ +F     ++T + + +       + T+     V       
Sbjct: 381 LREILVDRCDLKAVITMPSGVFKPYAGVSTAILLFTKVWGPKEKVTQAATEHVWFYEMQA 440

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR---- 485
              S+ ++  K+    D     I+  +  R N +       + F   R ++         
Sbjct: 441 DGYSLDDKRSKQEGYGD--LLDIVARFHER-NTEKDIDRTAKWFMVPRAEIADEKNGYDL 497

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
                 K     ++ D     L  L +    ++    + ++      E
Sbjct: 498 SMSRYKKEVFEEVKYDAPGVILKRLLKEEVGEVEDESLGKVKSGIVRE 545


>gi|283782192|ref|YP_003372947.1| N-6 DNA methylase [Pirellula staleyi DSM 6068]
 gi|283440645|gb|ADB19087.1| N-6 DNA methylase [Pirellula staleyi DSM 6068]
          Length = 554

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 141/405 (34%), Gaps = 82/405 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE L+       +     F TPR ++ L + L+          +P +   + DP
Sbjct: 193 DIQGDVYEMLLNEIS--SAGKNGQFRTPRHIIKLISELV----------NPQLGHRICDP 240

Query: 213 TCGTGGFLTDAMNHV---------------------------ADCGSHHKIPPILVPHGQ 245
            CGT GFL DA  ++                                + K       +G 
Sbjct: 241 ACGTAGFLLDAYQYIVTQLARKKVKKQKFEPDEDGFIRTSVSGQLDQNKKDILEQSLYGF 300

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + +     + +  +++  ++       + ++    TLSK       +   ++NPPF    
Sbjct: 301 DFDSTMVRLALMNLMMHGID-------NPHVDYQDTLSKSFTEEMEYDIVMANPPFTGSI 353

Query: 306 EKDKDAVEKEHKNGELGRFGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
             DK  + +            GL  K +   +LF   +   L+     GG A I++    
Sbjct: 354 --DKGDINE------------GLTLKTTKTELLFTERIFTLLKK----GGTAGIIVPQGV 395

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423
           LF   A     E R+ L+E   ++A+++LP+ +F     +AT + + +        GK Q
Sbjct: 396 LF--GAAGAFVEARKKLVEEAELKAVISLPSGVFKPYAGVATAILVFTR------SGKTQ 447

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483
                +L         +R  ++  +   +++ + +R   +         F    + V   
Sbjct: 448 HTWFYNLANDGMTLDDRRTRVDGSELPDVVEKWNARNPKEKGDRKSNCFF----VPVEEI 503

Query: 484 LRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
              ++ L       +E D T  +         L  LK +  +I  
Sbjct: 504 REKTYDLSFNRYGEVEHDETEHE----DPKSLLQQLKALEDKIQQ 544


>gi|330902769|gb|EGH33773.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 200

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 78/214 (36%), Gaps = 28/214 (13%)

Query: 80  FYNTSEYSLSTLGST---NTRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGL- 132
           F+  S      L +    N  N L   +    +N      + E  DF+  + + +   L 
Sbjct: 7   FWVPSSSRFKHLLNEAHTNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQSKIPDLK 66

Query: 133 LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L ++  +F  + L         +    YE+LI  F     +   +F TPR VV L   LL
Sbjct: 67  LRQLISHFGQVRLRNSDFEFPDLLGAAYEYLIGEFADSAGKKGGEFYTPRSVVRLMVRLL 126

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P +   +YDP CG+GG L  A   + + G   +        GQE     
Sbjct: 127 ----------RPELKHDIYDPCCGSGGMLIAAKEFIDEHGEDGRK---ANLFGQEFNGTV 173

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            ++    ML+  +        + ++Q   TLS  
Sbjct: 174 WSIAKMNMLLHGI-------STADLQNDDTLSDP 200


>gi|146319106|ref|YP_001198818.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 05ZYH33]
 gi|145689912|gb|ABP90418.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 05ZYH33]
          Length = 487

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 129/369 (34%), Gaps = 50/369 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +       F      ++   LL ++      ++           ++IYE +++   S  
Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAG 162

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR        +L          +P +  T+ D  CGTGGFLT  +NH+   
Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLGQQ 210

Query: 231 GSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285
               +          G E +   H + V  + +  ++          I  G+TL K   D
Sbjct: 211 RKTSEDVQKYTQAVFGIEKKAFPHLLAVTNLFLHEID-------DPKIIHGNTLEKNVRD 263

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               ++F   + NPPFG                     F   L + S+ + LF+  +  +
Sbjct: 264 YTEDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSSETADLFMAVIMYR 311

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404
           L+      GR  ++L    LF        + +++ L+E   +  I+ LP  +F   T I 
Sbjct: 312 LKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIH 364

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           T +      K  E     +L +  + + +       R     D    + + + +R+    
Sbjct: 365 TNILFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQEILE 419

Query: 465 SRMLDYRTF 473
                 ++F
Sbjct: 420 GNFYKSKSF 428


>gi|294809017|ref|ZP_06767739.1| putative type I restriction-modification system, M subunit
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294443742|gb|EFG12487.1| putative type I restriction-modification system, M subunit
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 553

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 86/491 (17%), Positives = 169/491 (34%), Gaps = 79/491 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
              ++  +I    L + L       L+  +S + +K           E+          +
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 85

Query: 83  TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135
                +  L   +   NL        +   F      I E + D  ST   +     L++
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTVNTKIPLFE 145

Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176
                             +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 252

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290
                   Q++   ++ +         L  +       N  QG TL      S D    +
Sbjct: 253 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 306

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343
           +F + +SNPPF   +   ++ +          RF  G+P        SM     F+ H+ 
Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L+      G+ AIV+ +   F       E++I   ++++ ++   V++P+++F  T  
Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 415

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462
              +             KV LI+A+ L    ++  G K+  +NDD+  +I+  +  +E  
Sbjct: 416 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAV 472

Query: 463 K-FSRMLDYRT 472
           + FS  + Y  
Sbjct: 473 EDFSVAVSYDE 483


>gi|264677645|ref|YP_003277551.1| type I restriction-modification system subunit M [Comamonas
           testosteroni CNB-2]
 gi|262208157|gb|ACY32255.1| type I restriction-modification system, M subunit, putative
           [Comamonas testosteroni CNB-2]
          Length = 142

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 7/132 (5%)

Query: 8   AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
              + +FIW  A+D L   F    +  VILP  +LRRL+C LEP++ AV E+        
Sbjct: 6   QNKIVSFIWSIADDCLRDVFVRGKYRDVILPMFVLRRLDCLLEPSKEAVLEEVRFQREDA 65

Query: 63  GGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDFDF 120
             +++D     + +GY FYNTS ++L +L    +    NL++Y+  FSDN K I E FD 
Sbjct: 66  EMADLDPHGLREASGYVFYNTSRFTLKSLLGNPSQLEANLKNYLGGFSDNVKEIVEKFDL 125

Query: 121 SSTIARLEKAGL 132
            + I ++ + G 
Sbjct: 126 RNQIRKMVQHGR 137


>gi|262183026|ref|ZP_06042447.1| type I restriction enzyme M protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 533

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 73/424 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST-NT 96
              ++ L+      R    +K  A G      +     +              L    + 
Sbjct: 44  LLFIKDLD-----ERQVQIDKRRALGDPTATED-IFDASQQD------LRWRNLIEDRDI 91

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIA----RLEKAGLLYKICKNFSGIELHPDTVPD 152
                + I       K       F   +A     +E    L ++ +    +         
Sbjct: 92  ARRKATIINKVFPFIKE-MGGTGFQEHMANASFEIESEATLSRVMELIDQLHFSNK---- 146

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE+++ +  +        F T   ++ L  AL+           P   + + DP
Sbjct: 147 DMKGDLYEYMLDKLSTSG--TNGQFRTTSHIIELLVALM----------EPTPQQRIIDP 194

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLE 265
            CGT GFL  A + +A                      G + +     +    M +   E
Sbjct: 195 ACGTAGFLVAANDWIAHHHRADLFNKDTRTTFTNEGLTGFDFDKTMVRIAAMNMFMHGFE 254

Query: 266 SDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                    NI    +L +      + F   L+NPPF      DKDAV+ + K+      
Sbjct: 255 -------EPNISYRDSLQQLPTTFDEAFDLVLANPPFAGSL--DKDAVDPKLKS------ 299

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              +       +LF+      L+     GGRAA+++    LF   +      +R+ L+E+
Sbjct: 300 ---VTTAKKTEILFVHRFLQLLKP----GGRAAVIVPEGVLF--GSTKAHKALRKTLVED 350

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             ++A++ LP+ +F  +   ++T +   +   +     +V   + T       +   KR 
Sbjct: 351 QRLDAVIKLPSGVFKPYS-GVSTAVLCFTRTDSG-GTDEVWFYDVTADGY---SLDDKRT 405

Query: 443 IIND 446
            + D
Sbjct: 406 PLLD 409


>gi|224368579|ref|YP_002602742.1| HsdM1 [Desulfobacterium autotrophicum HRM2]
 gi|223691295|gb|ACN14578.1| HsdM1 [Desulfobacterium autotrophicum HRM2]
          Length = 503

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 138/408 (33%), Gaps = 78/408 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+L+ +  +        F TPR ++ +   +L           P    T+ DP
Sbjct: 138 DTKGDLYEYLLGKLTTAG--INGQFRTPRHIIRMMVDIL----------DPKPDETVADP 185

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL-----------------------VPHGQELEP 249
            CGT GFL   M ++ +  +  +                            + HG + + 
Sbjct: 186 ACGTAGFLVSVMEYLLENYTSKEAVITHDTGEKTFPGDKLEAHQWKHITHGMFHGFDFDI 245

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGK 303
               + V  +L+  ++       S  I    TLS         F    F   L+NPPF  
Sbjct: 246 TMLRISVMNLLLHGID-------SPTIHYQDTLSNNFPEKFPNFAEDGFDVILANPPFKG 298

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             + +        K            K     +LF+  +   L+     GGR+A ++   
Sbjct: 299 SLDFEDVHPSLLSKV-----------KTKKTELLFVTLILKMLK----LGGRSATIVPDG 343

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
            LF   +      +R+ L+E + +E +++LP+ +F     ++T + I +      +   V
Sbjct: 344 VLF--GSSKAHVALRKALVEENQLEGVISLPSGVFKPYAGVSTAILIFTKG---GKTDDV 398

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR------ 476
              + T       +   KR  +  +    +++ + +++  K +       F  +      
Sbjct: 399 FYYDLTADG---FSLDDKRVKVEKNDIPDVIERWKNKDPQKDTDKTQKFFFVSKDEIKAN 455

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           +  +        + ++      +  +   K         +D L+ M+ 
Sbjct: 456 KYDLSINRYKEIVYEEDEYEPPKDILARMKDLEKEILADMDELEGMLG 503


>gi|302553244|ref|ZP_07305586.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302470862|gb|EFL33955.1| N-6 DNA methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 374

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/361 (19%), Positives = 132/361 (36%), Gaps = 45/361 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR ++      +           P    T+ DP CGTGGFL  A  ++     +   P
Sbjct: 20  FTPRPLIQAIIDCV----------RPTADDTITDPACGTGGFLLAAAEYILHEYGNQLTP 69

Query: 238 PILV------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G EL   T  +    + +  +    +      ++    L+      KR
Sbjct: 70  EQRQDLSSGGIWGTELVRNTARLAAMNLFLHGI---GQPTGPALVRTKDALAAP--PDKR 124

Query: 292 FHYCLSNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               L+NPPFGKK       D  +  +E    E   F        +  + F+ H+A+ LE
Sbjct: 125 ASLVLANPPFGKKSSITVYGDDGSAAREAIAYERRDFWVTTT---NKQLNFVQHIASLLE 181

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           +     GRAA+V+  + LF G A  GE+ IRR LL+   +  ++ LPT +F+   +   +
Sbjct: 182 IH----GRAAVVVPDNVLFEGGA--GET-IRRRLLKEYDVHTLLRLPTGIFYAGGVKANV 234

Query: 408 WILSNRKT---EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
                ++         K+ + +    + + ++   K+  +        +  Y  R +   
Sbjct: 235 LFFERKQARPERPWTEKLWVYD----FRTAQHFTLKQNPLTRAALEDFVQCY--RPDEDR 288

Query: 465 SRMLDYRTF-GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           S+ ++   F  Y   +++   + +  +       L+          L      D+   + 
Sbjct: 289 SKRVETERFKAYTYEELIARDKANLDITWLRDPSLDDADNLPAPEVLAAEIVEDLQAALE 348

Query: 524 Q 524
           +
Sbjct: 349 E 349


>gi|149203431|ref|ZP_01880401.1| putative type I restriction enzyme M protein [Roseovarius sp.
           TM1035]
 gi|149143264|gb|EDM31303.1| putative type I restriction enzyme M protein [Roseovarius sp.
           TM1035]
          Length = 510

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 85/532 (15%), Positives = 168/532 (31%), Gaps = 94/532 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           F +  RL    E       ++           E    +    F +     +  L      
Sbjct: 34  FLMFARLLDINETRDENRLKRAGKRDNPPRFKEDEQHLRWSHFRHLGADEMLPLIRDEVF 93

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            +      S S  A       +F      + +   L  + K  + I+  P         +
Sbjct: 94  PHFRKSSTSGSAFA-------EFMKDAQLMIQKPSL--LVKAVNMIDKLP-LTEGDTKGD 143

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +YE+L+ +  +        F TPR ++ L   LL          +P     + DP+ GTG
Sbjct: 144 LYEYLLSKLTTAG--INGQFRTPRHIIKLMIELL----------APQPNEIIGDPSAGTG 191

Query: 218 GFLTDAMNHVAD---------------------------CGSHHKIPPILVPHGQELEPE 250
           GFL + M ++                                H +     + HG + +  
Sbjct: 192 GFLVETMQYLMKEHTSEEGIDEVTDPETGKTEKIYTGDLLEDHREHIRSKMFHGFDFDAT 251

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKK 304
              +    +++  ++         +I    TLS              F   L+NPPF   
Sbjct: 252 MLRIAAMNLMLHGVD-------DPDIHYQDTLSTSFSDKYPQSASDGFDVILANPPFKGT 304

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            + +        K            K     +LFL+ +   L+      GR+A ++    
Sbjct: 305 LDFEDVHPGLLRKV-----------KTKKTELLFLVLILRMLKDNS---GRSATIVPDGV 350

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423
           LF   + +    +RR L++++ +EA+++LP+ +F     ++T + +        R   V 
Sbjct: 351 LF--GSSTAHVALRRMLIDDNQLEAVISLPSGVFKPYAGVSTGILVFRKG---GRTDDVF 405

Query: 424 LINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
                           KR    D D     ++ + +R+  + +       F    +    
Sbjct: 406 FFEVE---HDGFTLDDKRDPTPDKDDLPGCVEAWKNRDAQRLTDRTQKAFF----VPAEE 458

Query: 483 PLRMSFILD----KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             + ++ L     K  L + EA     ++    +S   DI + + +     G
Sbjct: 459 IRQSNYDLSLSKYKERLYKEEAYDPPAEILARMKSLNDDIARDLAELEGMLG 510


>gi|294647362|ref|ZP_06724955.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CC 2a]
 gi|292637321|gb|EFF55746.1| putative type I restriction-modification system, M subunit
           [Bacteroides ovatus SD CC 2a]
          Length = 530

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 86/491 (17%), Positives = 169/491 (34%), Gaps = 79/491 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
              ++  +I    L + L       L+  +S + +K           E+          +
Sbjct: 4   DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 62

Query: 83  TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135
                +  L   +   NL        +   F      I E + D  ST   +     L++
Sbjct: 63  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTVNTKIPLFE 122

Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176
                             +               +    S+I+E+LI+ + +       +
Sbjct: 123 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 182

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 183 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 229

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290
                   Q++   ++ +         L  +       N  QG TL      S D    +
Sbjct: 230 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 283

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343
           +F + +SNPPF   +   ++ +          RF  G+P        SM     F+ H+ 
Sbjct: 284 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 338

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L+      G+ AIV+ +   F       E++I   ++++ ++   V++P+++F  T  
Sbjct: 339 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 392

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462
              +             KV LI+A+ L    ++  G K+  +NDD+  +I+  +  +E  
Sbjct: 393 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAV 449

Query: 463 K-FSRMLDYRT 472
           + FS  + Y  
Sbjct: 450 EDFSVAVSYDE 460


>gi|299144864|ref|ZP_07037932.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23]
 gi|298515355|gb|EFI39236.1| type I restriction enzyme M protein [Bacteroides sp. 3_1_23]
          Length = 553

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 131/355 (36%), Gaps = 49/355 (13%)

Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
             +               +    S+I+E+LI+ + +       ++ TP  +  +   LL+
Sbjct: 162 RALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLV 221

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
             +  L           YDP+ GTG  L    + + +               Q++   ++
Sbjct: 222 GDNADLHS------MECYDPSAGTGTLLMALSHQIGE--------DRCTIFSQDISQRSN 267

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFGKKWE 306
            +         L  +       N  QG TL              +F + +SNPPF   + 
Sbjct: 268 KMLK-----LNLLLNGLVSSLDNAIQGDTLVNPYHKSDDGQQLRQFDFVVSNPPFKMDFS 322

Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLANKLELPPNGGGRAAIV 359
             ++ +          RF  G+P        SM     F+ H+ N L+      G+ AIV
Sbjct: 323 DTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKT----GKGAIV 373

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           + +   F       E++I   ++++ ++   V++P+++F  T     +            
Sbjct: 374 IPTG--FITAKSGIENKILHKIVDDKIVYGCVSMPSNVFANTGTNVSVLFFDK---SATT 428

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
            KV LI+A+ L    ++  G K+  +ND++  +I+  +  +E    FS  + Y  
Sbjct: 429 DKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAVDDFSVAVTYDE 483


>gi|78189485|ref|YP_379823.1| type I restriction modification enzyme methylase subunit
           [Chlorobium chlorochromatii CaD3]
 gi|78171684|gb|ABB28780.1| type I restriction modification enzyme methylase subunit
           [Chlorobium chlorochromatii CaD3]
          Length = 579

 Score =  147 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/572 (14%), Positives = 186/572 (32%), Gaps = 120/572 (20%)

Query: 35  ILPFTLLRRLECALEPTRSAVRE-----------------KY-LAFGGSNIDLESFVKVA 76
           I     ++RL+  L+  + A  E                 +Y       +   E   K A
Sbjct: 34  ITYLLFMKRLDE-LDLKKQADAEWTGEPYISRFAGEWIPPEYRAKLSEQDTVEEQQKKQA 92

Query: 77  GYSFYNTSEYS-----LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEK 129
             + +  ++ +        + +     +++S +  F  +      +F     + +  + K
Sbjct: 93  EATKFAIAKQTLRWSEFKHMQAEEMLLHVQSKVFPFLKDMNGAESNFTHHMKNAVFIIPK 152

Query: 130 AGLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
             L+ +  K    I    +            +  ++YE L+             F TPR 
Sbjct: 153 PSLMVEAVKTVDEIFEIMEKDSQEKGQAFQDIQGDVYEMLLSEIAQAGK--NGQFRTPRH 210

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------- 227
           ++ L T L+           P + + + DP CGT GFL  A  ++               
Sbjct: 211 IIKLMTELV----------QPQLAQRIGDPACGTAGFLLGAYQYIVTQLAIKTSDHFRGV 260

Query: 228 ------------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                                   +      +       +G +++     + +  +++  
Sbjct: 261 TNMTDRGAHTFQPDEDGFVRTSVASGLTETAQAILQSSLYGYDIDSTMVRLGLMNLMMHG 320

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           ++         NI    TLSK       +H  ++NPPF      DK  + +         
Sbjct: 321 ID-------EPNIDYKDTLSKSYNEEAEYHIVMANPPFTGSI--DKGDINENLTL----- 366

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   +   +LF+ ++   L+     GG A +++    LF   +G+    +R+ L+E
Sbjct: 367 ------STTKTELLFVENIYRLLK----RGGTACVIVPQGVLF--GSGTAFKNLRQLLVE 414

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV-QLINATDLWTSIRNEG--- 438
              ++A++ +P+ +F     ++T + + +  K  E + KV Q       +  ++++G   
Sbjct: 415 RCELKAVITMPSGVFKPYAGVSTAILLFT--KVYESKEKVRQPATHQVWFYDMQSDGYSL 472

Query: 439 -KKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTF-GYRRIKVLRPLRMSFILDKTGL 495
             KR  +      ++I+  + +R     S       F  Y  ++            +   
Sbjct: 473 DDKRTKLEGYGDLQEIVAKFHARNPATNSDRTQKCFFVPYADLEAEGYDLSISRYKEDVF 532

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
             +  +     L  L  +   +     +  I+
Sbjct: 533 EEVHYEAPSAILHQLLAAEVGETANAHLANIH 564


>gi|253755915|ref|YP_003029055.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
 gi|251818379|emb|CAZ56207.1| type I restriction-modification system M protein [Streptococcus
           suis BM407]
          Length = 487

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 130/369 (35%), Gaps = 50/369 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +       F      ++   LL ++      ++           ++IYE +++   S  
Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAG 162

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR        +L          +P +  T+ D  CGTGGFLT  +NH++  
Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLSQQ 210

Query: 231 GSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285
               +          G E +   H + V  + +  ++          I  G+TL K   D
Sbjct: 211 RKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-------DPKIIHGNTLEKNVRD 263

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               ++F   + NPPFG                     F   L + S+ + LF+  +  +
Sbjct: 264 YTEDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSSETADLFMAVIMYR 311

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404
           L+      GR  ++L    LF        + +++ L+E   +  I+ LP  +F   T I 
Sbjct: 312 LKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIH 364

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           T +      K  E     +L +  + + +       R     D    + + + +R+    
Sbjct: 365 TNILFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQEILE 419

Query: 465 SRMLDYRTF 473
                 ++F
Sbjct: 420 GNFYKSKSF 428


>gi|158333869|ref|YP_001515041.1| type I restriction modification system M subunit [Acaryochloris
           marina MBIC11017]
 gi|158304110|gb|ABW25727.1| type I restriction modification system M subunit, putative
           [Acaryochloris marina MBIC11017]
          Length = 381

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 137/407 (33%), Gaps = 74/407 (18%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A +L  +      IE+           ++YE+++ +     +     F TPR ++ L
Sbjct: 8   MPTARVLANVVDQLDAIEMA----DRDTKGDLYEYMLGKIA--SAGQNGQFRTPRHIIKL 61

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPP 238
              L           +P     + DP CGT GFL  A  ++ D  S          +   
Sbjct: 62  MVEL----------TAPTPKDVICDPACGTAGFLIAASEYLMDHHSDVIYKDAESRRRFN 111

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----FHY 294
                G + +     +    ML+  +E         +I+   +L++           +  
Sbjct: 112 EETFSGYDFDSTMLRIGSMNMLLHGVE-------KPDIRYKDSLAEADAAAGDDEEAYSL 164

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF    + +  A +              + K         +            GG
Sbjct: 165 ILANPPFAGSLDYETTAKDL-----------LKVVKTKKTE----LLFLTLFLRVLQTGG 209

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           RAA+++    LF   +      +R+ L+E+  ++ I+++P+ +F     ++T + + +  
Sbjct: 210 RAAVIVPDGVLF--GSSKAHKALRKMLVEDQKLDGIISMPSGVFKPYAGVSTAIVLFTKT 267

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRE------NGKFSR 466
            +     +V   +   + T   +   KR    D      IL  + +RE        + S 
Sbjct: 268 NSG-GTDQVWFYD---MQTDGFSLDDKRTEQPDKSDLPDILTRWQAREAEAERKRTEQSF 323

Query: 467 MLDYRTF----------GYRRIKVLRPLRMSFILDKTGLARLEADIT 503
           ++                Y+ +           +    LA+LE +I 
Sbjct: 324 LVPREEIVENDYDLSINRYKEVVYEAVEYDPPGVILKRLAKLEKEIA 370


>gi|291540211|emb|CBL13322.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 269

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 115/289 (39%), Gaps = 45/289 (15%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           FS  E             I+E+LI+ +  +  +   ++ TP  +  +   +++       
Sbjct: 8   FSFAEAFSQKYDFFA--TIFEYLIKDYNKDFGK-YAEYYTPHSIASIIARIMVPEGVQNV 64

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                   T+YDP  G+G  +    + + +             + Q++  +++       
Sbjct: 65  --------TVYDPAAGSGTLVLALAHEIGESN--------CTIYTQDISQKSN-----EF 103

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFGKKWEKDKDAVE 313
           L   L  +       ++  G TL       +      +F Y +SNPPF   +  ++D + 
Sbjct: 104 LRLNLILNNLVHSLGHVVHGDTLLSPQHLNRQKNGLMKFDYIVSNPPFNVDFSDNRDTL- 162

Query: 314 KEHKNGELGRFGPGLPKISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +    RF  G+P + + +        +FL H+   ++     GGRAA+V+ +  L 
Sbjct: 163 --AGDIYKERFWAGVPNVPNKNKDSMAIYQMFLQHIIFSMK---ENGGRAAVVVPTGFLT 217

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            G       +IR  ++E+ ++  +V++P+++F  T     +  L N K+
Sbjct: 218 AGTRI--PKKIRERIVEDRMLRGVVSMPSNIFATTGTNVSVLFLDNSKS 264


>gi|210134633|ref|YP_002301072.1| type I R-M system M protein [Helicobacter pylori P12]
 gi|210132601|gb|ACJ07592.1| type I R-M system M protein [Helicobacter pylori P12]
          Length = 543

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 85/542 (15%), Positives = 181/542 (33%), Gaps = 82/542 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECAL---------EPTRSAVREKYLAFGGSNIDLESFVKVAG 77
              ++  +I    L + L               T    ++             S  K+  
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFFFEQEFPNQTIRDYKDFKKEEKEDFFLTLSDKKLPK 90

Query: 78  YSFYNTSEYSLST-LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
            ++     Y         +    L++     S+N   +F       T   L         
Sbjct: 91  LAYDELLNYLFEKHFYDNDLHLKLDAIFNRISNNNAELFNTTSTDKTTIALFESVSQYIN 150

Query: 128 EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
           E++        L    KNF+  +   +          + I+E+LI+ +     E   ++ 
Sbjct: 151 EESKRANFTRSLLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLIKDYNKAGGETYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL++         P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLINE--------PTQSVKIYDPSTGTGTLLMALAHQI--------GTT 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++  L    R        +G+TL+    + +   +  Y 
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHSKECHGKMDYI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSN 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AI++ +   F       E++I R L++  L+  +V +P+ +F  T     + 
Sbjct: 365 K----GKGAIIVPTG--FISTKSGVENKIVRHLVDGRLVYGVVCMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRM 467
                 + +   +V LI+A+ L         K+  +       IL+ + ++ +   F  +
Sbjct: 419 FFQKTPSAK---EVVLIDASKLGEEYTENKNKKTHLRPSDIDLILETFQNKTQKADFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-------ITWRKLSPLHQSFWLDILK 520
           + +     +   +      +       +++ E +            L    QS   +IL+
Sbjct: 476 VSFDEIIGKNYSLNPGQYFTIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQQEILE 535

Query: 521 PM 522
            +
Sbjct: 536 TL 537


>gi|251791791|ref|YP_003006512.1| N-6 DNA methylase [Dickeya zeae Ech1591]
 gi|247540412|gb|ACT09033.1| N-6 DNA methylase [Dickeya zeae Ech1591]
          Length = 570

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 84/572 (14%), Positives = 181/572 (31%), Gaps = 111/572 (19%)

Query: 35  ILPFTLLRRLECA-------LEPTRSAVREKYL----------AFGGSNIDLESFVKVAG 77
           I     ++RL+          E T      K+                + D E   K+  
Sbjct: 34  ITYLLFMKRLDELDQKRQADAEFTGEKYTSKFEGSWIPPEYRARREAKDTDAEWAKKLED 93

Query: 78  YSFYNTSEYS-----LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKA 130
              Y   + +        + +     +++  +  F  +      +F     + +  + K 
Sbjct: 94  EKRYQIEKRTLRWSEFKRMQAEEMLQHVQGKVFPFLKDLNGAESNFTHHMKNAVFIIPKP 153

Query: 131 GLLYKICKNFSGIELHPDTVPD-------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            LL +  K    I    +            +  ++YE L+    +        F TPR +
Sbjct: 154 ALLVEAVKTIDDIFEIMERDSREKGQAFQDIQGDVYEFLLSEIATAGK--NGQFRTPRHI 211

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----------ADCGSH 233
           + L   L+           P + + + DP CGTGGFL  A  ++           D    
Sbjct: 212 IKLIADLV----------RPQLGQRIVDPACGTGGFLLGAYQYIVTQLAIKDGKQDLSPD 261

Query: 234 HKIPPILV----------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                                    +G +++     + +  +++  ++         +I 
Sbjct: 262 EDGFARTSVAAGLTRKTQLILQESLYGYDIDATMVRLGLMNLMMHGID-------EPHID 314

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              TLSK       +   L+NPPF      DK  + +  +              +   +L
Sbjct: 315 YQDTLSKGYNEEASYDIVLANPPFTGSI--DKGDINENLQL-----------ATTKTELL 361

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ ++   L+     GG A +++    LF+        ++R+ L+E   ++A++ +P+ +
Sbjct: 362 FVENIYRLLKK----GGTAGVIVPQGVLFSSAK--AFRDLRQTLVERCDLKAVITVPSGV 415

Query: 398 FFR-TNIATYLWILSN------RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           F     ++T + + +       + T    G V          S+ ++  K+    D   +
Sbjct: 416 FKPYAGVSTAILLFTKVWGPKDKVTAPATGHVWFYEMAADGYSLDDKRTKQEGYGD--LQ 473

Query: 451 QILDIYVSRE----NGKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITW 504
            I+  Y +R+        S       F   R ++             +     ++ D   
Sbjct: 474 DIITSYHARDVAAIPDDKSDRTARC-FMVPRTEIEAESYDLSLSRYKQDVFEEVQYDKPS 532

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
             L  L Q+   D+ +  + ++      E   
Sbjct: 533 VILERLIQAEVGDVKEADLTKVQSGIVRELLE 564


>gi|113476047|ref|YP_722108.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
 gi|110167095|gb|ABG51635.1| N-6 DNA methylase [Trichodesmium erythraeum IMS101]
          Length = 493

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/456 (14%), Positives = 142/456 (31%), Gaps = 76/456 (16%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +++L+      +    ++  A     +  +     A  S         S      T 
Sbjct: 35  LLFIKQLD------QQEAVKEKKARRLKKVKEKLIFSEASQS------CRWSHFKELATD 82

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-------GLLYKICKNFSGIELHPDTV 150
              E+         K +    + ++    ++ A        LL  + +    + L     
Sbjct: 83  KMFEAVRDEAFPFIKTLGGTLENNAYSRHMKDAVFMIGSPALLANVVQQIDSLPLD---- 138

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                 ++YE+++ +  +        F TPR ++ +   L+           P     + 
Sbjct: 139 DRDTKGDLYEYMLSKLNTAG--QNGQFRTPRHIIKMIVDLMT----------PQPNDVVC 186

Query: 211 DPTCGTGGFLTDAMNHVADCG-----------SHHKIPPILVPHGQELEPETHAVCVAGM 259
           DP  GT GFL     H+                + +     + HG + +     +    +
Sbjct: 187 DPAFGTAGFLVAVAEHLQQLKDENGSLVLNAPGNKEHFYQHMFHGFDFDATMLRIGSMNL 246

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +   +E       +  I+    LS+D     + F   L+NPPF    +K   A       
Sbjct: 247 MQHGIE-------NAQIEARDALSEDHAGVEEMFTLVLANPPFKGSIQKSSIA------- 292

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            +         K         +            GGRAA+++    LF   +     ++R
Sbjct: 293 -KDLTKIVNTTKTE-------LLFLALFLRLLKTGGRAAVIVPDGVLF--GSSKAHKDVR 342

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           + L+E   ++ ++++P+ +F     ++T + + +          V   +   +     + 
Sbjct: 343 KMLVEEHKLDGVISMPSGVFKPYAGVSTAILMFTKT-GAGGTDFVWFCD---MQADGFSL 398

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             KR+ + ++    I   +  R   K         F
Sbjct: 399 DDKRQPVEENDISNITKSWQKRNPKKDKDRNSKTFF 434


>gi|253752154|ref|YP_003025295.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|253753980|ref|YP_003027121.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|251816443|emb|CAZ52079.1| type I restriction-modification system M protein [Streptococcus
           suis SC84]
 gi|251820226|emb|CAR46647.1| type I restriction-modification system M protein [Streptococcus
           suis P1/7]
 gi|292558742|gb|ADE31743.1| Type I restriction enzyme EcoEI M protein [Streptococcus suis GZ1]
 gi|319758541|gb|ADV70483.1| type I restriction-modification system M protein [Streptococcus
           suis JS14]
          Length = 487

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 129/369 (34%), Gaps = 50/369 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            +       F      ++   LL ++      ++           ++IYE +++   S  
Sbjct: 104 IRKSIVKSAFEDANNYMKNGVLLRQMINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAG 162

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    +F TPR        +L          +P +  T+ D  CGTGGFLT  +NH+   
Sbjct: 163 NS--GEFYTPRAATDFIAEML----------NPQLGETMADLACGTGGFLTSTLNHLGQQ 210

Query: 231 GSHHKI--PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285
               +          G E +   H + V  + +  ++          I  G+TL K   D
Sbjct: 211 RKTSEDVQKYNQAVFGIEKKAFPHLLAVTNLFLHEID-------DPKIIHGNTLEKNVRD 263

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               ++F   + NPPFG                     F   L + S+ + LF+  +  +
Sbjct: 264 YTEDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSSETADLFMAVIMYR 311

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404
           L+      GR  ++L    LF        + +++ L+E   +  I+ LP  +F   T I 
Sbjct: 312 LKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIH 364

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
           T +      K  E     +L +  + + +       R     D    + + + +R+    
Sbjct: 365 TNILFFDKTKKTEETWFYRL-DMPEGYKNFSKTKPMRN----DHFNPVREWWKNRQEILE 419

Query: 465 SRMLDYRTF 473
                 ++F
Sbjct: 420 GNFYKSKSF 428


>gi|317013881|gb|ADU81317.1| type I restriction enzyme M protein [Helicobacter pylori
           Gambia94/24]
          Length = 543

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 81/530 (15%), Positives = 176/530 (33%), Gaps = 75/530 (14%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTR-----SAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +     Y  F     +             
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFFFKTKFPNKTIRDYKDFNEEEKEDFFLTLSDKQLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  LS L   +  +N     L++     S N   +F       T   L         
Sbjct: 91  LAYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESVSQYIN 150

Query: 128 EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
           E++        L    KNF+  +   +          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL+          P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLV--------NKPTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++  L    R        +G+TL     +     +  + 
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLINPYHSKDHKGKMDFI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSP 364

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G+ AI++ +   F       E++I R L++  L+  ++ +P+ +F  T     + 
Sbjct: 365 K----GKGAIIVPTG--FISAKSGIENKIVRHLVDERLVYGVICMPSQVFANTGTNVSII 418

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE-NGKFSRM 467
                 + +   +V LI+A+ L         K+  +       IL+ + ++     F  +
Sbjct: 419 FFQKTPSAK---EVVLIDASKLGEEYTENKNKKTRLRASDMDLILETFQNKAPKSDFCAL 475

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           + +     +   +      +       +++ E +   ++ S    S + +
Sbjct: 476 VSFDEITEKNYSLNPGQYFTIEDTSETISQAEFESLMQQYSSELTSLFDE 525


>gi|282878166|ref|ZP_06286963.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
 gi|281299744|gb|EFA92116.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
          Length = 503

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 72/434 (16%), Positives = 152/434 (35%), Gaps = 51/434 (11%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +    E       + Y +         ++    G S    +   L +  +    
Sbjct: 33  MLFLK-VYDEKENDWELDDDDYKSIIPEECRWRNWAHDDG-SGNALTGDDLLSFVNNTLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++   + +   +       F      ++    L ++     G+ L  D         
Sbjct: 91  VKLKNIEITPNTPIREAIVKTTFEDANQYMKDGVQLRQVLNVIDGLNLG-DYEESHAFGE 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++    + +  + +F TPR +      ++          +P +   + D  CGTG
Sbjct: 150 IYETILKEM--QSAGSSGEFYTPRALTEFMAEIV----------NPQIGEKMADFACGTG 197

Query: 218 GFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GF+T  +  +         +        G E +   + +CV  +L+  +++         
Sbjct: 198 GFITSWLGELDKKVKTAEDRKEYNQSVFGIEKKQFPYMLCVTNLLLHGIDTPL------- 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +   ++L+KD        +F   L NPP+G   + D  +                  + S
Sbjct: 251 VFHDNSLTKDVLNYTDEDKFDVVLMNPPYGGNEKSDVKSHFPSDM------------RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF++ +  +L+      GRAA+++    LF   A + +  I+  LL +  +  I+ 
Sbjct: 299 ETADLFMVLIMYRLKK----NGRAAVIVPDGFLF--GADNTKIAIKTKLLRDFNLHTIIR 352

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDD 447
           LP  +F   T+IAT +    N    +   +      T  +     EG     K + +   
Sbjct: 353 LPGSIFAPYTSIATNILFFDNT-CADGAPEGFSTKDTWFYRLDMPEGYKHFSKTKSMKSV 411

Query: 448 QRRQILDIYVSREN 461
               I + +  R+ 
Sbjct: 412 HCDPIREWWNDRKE 425


>gi|313678680|ref|YP_004056420.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
 gi|312950278|gb|ADR24873.1| type I restriction-modification system, M subunit [Mycoplasma bovis
           PG45]
          Length = 483

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 160/443 (36%), Gaps = 58/443 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+     +  ++  + E       S I         G    + +   L    +    
Sbjct: 33  LLFLK-----IYDSKDKIWEMEDDSYKSIIPDNLKWSNWGSGSNSITGDELLNFVNNELL 87

Query: 98  NNLESY-IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             L+   I       K I +   F      ++   LL ++      +    +     + +
Sbjct: 88  KTLKEIKINPDMPFRKQIVKSA-FEDISNYMKDGTLLRQVINVIDELNF-DNIKEIHLFN 145

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +IYE ++++       G+ +F TPR +      +L           P + +T+ D  CGT
Sbjct: 146 DIYETILKKIQE---GGSGEFYTPRALTDFIAEIL----------DPKLGQTMADLACGT 192

Query: 217 GGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GGFLT  +N V +  +  +         +G E +   + + V  + +  ++         
Sbjct: 193 GGFLTSFLNRVNEQKNTLEDIKKYSQSVYGIEKKGFPYLLAVINLFLHNVD-------DP 245

Query: 275 NIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           N+  G++L    KD    ++F   + NPPFG     ++  ++                + 
Sbjct: 246 NLLHGNSLEKNVKDYSEDEKFDLIMMNPPFGGS---EQKIIQSNFPKDL---------RS 293

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           ++ + LF++ + ++L+     GG+AA++L    LF   A      I++ L     +  I+
Sbjct: 294 AETADLFMLVIMHRLK----MGGKAAVILPDGFLFGTGAQ---KNIKKKLFSEFNVHTII 346

Query: 392 ALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LP  +F   T+I T +    N  + +     +L    D+  + +N   K + +      
Sbjct: 347 RLPKTVFSPYTDINTNIIFFDNNGSTKSTWFYRL----DMPENQKNF-SKTKPMVSKHLD 401

Query: 451 QILDIYVSRENGKFSRMLDYRTF 473
            I   + +R           + F
Sbjct: 402 PIRQWWNNRNEIIEDTFYKSKQF 424


>gi|148990031|ref|ZP_01821285.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|147924557|gb|EDK75644.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP6-BS73]
          Length = 467

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++   A       +   L    +    
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTNDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           + D + +RE     +    ++F            +++ LD+ G  + E +I
Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452


>gi|297571613|ref|YP_003697387.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931960|gb|ADH92768.1| N-6 DNA methylase [Arcanobacterium haemolyticum DSM 20595]
          Length = 490

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/446 (18%), Positives = 157/446 (35%), Gaps = 83/446 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG----------YSFYNTSEYS 87
              L+ +  A E     + + Y +     +   S+                 F N  E  
Sbjct: 33  MLFLK-VYDAKEANWEIMLDDYESIIPERLRWRSWAPDHKDGRSMTGDELLIFLN--EDL 89

Query: 88  LSTLGSTNTRNN--LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
             TL +     N  L   I       K +FED +       ++   L+ ++    + I  
Sbjct: 90  FPTLKTLPITENTPLSQTI------VKGVFEDSN-----QYMKDGILIRQLVNLINEINF 138

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
             D         IYE L++    + +  + ++ TPR V      +L          +P +
Sbjct: 139 -DDYADLHAFGEIYETLLKEL--QSAGSSGEYYTPRAVTDFMIKML----------NPKL 185

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
              + D   GT GFLT A+ H+         +        G E +P  + + V  +L+  
Sbjct: 186 GERVADFAAGTSGFLTSALKHLDTQVESVEDREKFQNAVFGIEKKPMPYLLGVTNLLLHD 245

Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++             G++LS++       ++F     NPP+G     +++AV+       
Sbjct: 246 VDEPAFF-------HGNSLSRNVREYKEHEKFEVIAMNPPYGG---TEQEAVKANFPQAF 295

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    + S+ + LF+  +  +L+      GRA +VL    LF   +   +  ++  
Sbjct: 296 ---------RSSETADLFVALITYRLKK----NGRAGVVLPDGFLF--GSDGAKLALKER 340

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           L++   +  I+ LP  +F   T+IAT L         +             +   + EG 
Sbjct: 341 LIKEFNLHTIIRLPGSVFSPYTSIATNLLFFDKTHPTKD---------VWFYRVGKPEGY 391

Query: 440 KR----RIINDDQRRQILDIYVSREN 461
           K     + +  +  +  +D + SRE 
Sbjct: 392 KNFSKTKPLLLEHLQPAMDWWSSREE 417


>gi|332202402|gb|EGJ16471.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 487

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++   A       +   L    +    
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINAIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTNDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           + D + +RE     +    ++F            +++ LD+ G  + E +I
Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452


>gi|205825379|dbj|BAG71470.1| Type I restriction-modification system DNA methylase
           [Staphylococcus aureus]
 gi|329734476|gb|EGG70788.1| hypothetical protein SEVCU028_0605 [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 27/253 (10%)

Query: 14  FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
            +W+ A+ L G    +++  V L   +L+ +  + E     +      +       E   
Sbjct: 9   KLWQAADKLRGSMDASEYKNVALGIIILKYVSDSFEEKYEKLL--NDEYADEEDKDEYL- 65

Query: 74  KVAGYSFYNTSEYSLSTLGST-------NTRNNLESYIASFSDNAKAIFEDFDFSSTIAR 126
             A   F+   E     +             +   + I   +++ K +         + +
Sbjct: 66  --AENIFWVPKESRWQYINDNSKKPEIGQIIDKAMTAIEKENESLKGVLHKDYARPELDK 123

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I   F+      ++    V+  +Y++ I +F S   + A +F TP  +V L
Sbjct: 124 ----EKLGDIIDLFTFKVGDSESKKQDVLGRVYKYFIAKFASAEGKNAGEFYTPASIVKL 179

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              ++                 +YDP  G+GG    +   V      +  PP L     E
Sbjct: 180 HVEMI-----------EPYESRIYDPCYGSGGMFVQSERFVERHQRRYGYPPDLQKMAVE 228

Query: 247 LEPETHAVCVAGM 259
              E   +    +
Sbjct: 229 QVVEQAELMAGNL 241


>gi|312128928|ref|YP_003996268.1| site-specific DNA-methyltransferase (adenine-specific)
           [Leadbetterella byssophila DSM 17132]
 gi|311905474|gb|ADQ15915.1| Site-specific DNA-methyltransferase (adenine-specific)
           [Leadbetterella byssophila DSM 17132]
          Length = 475

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/545 (15%), Positives = 170/545 (31%), Gaps = 98/545 (17%)

Query: 8   AASLANFIWKNAEDLWGD---------FKHTDFGKVILP-FTLLRRLEC------ALEPT 51
            +++A  I    +    D          +        L     L+  +        L P 
Sbjct: 1   MSNIAGTIKSIRDIFRKDPGLSGDAQRIEQ-------LGWMIFLKLFDDKDKEKEILNPK 53

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
             +     L +     D E        +F N       TL +     +    I       
Sbjct: 54  YRSPIPAELQWRNWAEDDEGITGDELINFVN--NKLFPTLKNLTVAADDRLGI-----TI 106

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + I     F  T   ++      +     + I+    +    + + IYE +++       
Sbjct: 107 RQI-----FDGTNNYMKSGTTFRQAINKLNEIDFT-SSKDHHIFNVIYEEILQGLA--AK 158

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230
           +   +F TPR V      ++          +P +   + DP CGTGGFL   + H+    
Sbjct: 159 KDTGEFYTPRAVTQFIVDMV----------NPKLGEKITDPACGTGGFLVCTIEHLKRQV 208

Query: 231 -GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT- 288
                +        G EL+P    + V  ++   +E          ++ G +LS++  + 
Sbjct: 209 KNIDDRKTLQETVTGSELKPLPFMLSVVNLITHDIEV-------PQLENGDSLSREYTSI 261

Query: 289 --GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               R    ++NPPFG       +     +             + +D             
Sbjct: 262 KQKDRVDIIIANPPFGGVVGDGMETNFPLN---------YRTKESAD-------LFLILF 305

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIA 404
                 GGRA IVL    L  G     +  +R+ LLE+  +  IV LP  +F  + T + 
Sbjct: 306 IQLLKDGGRAGIVLPDGSL-TGD--GVKQRVRQKLLEDCNVHTIVRLPQSVFAPYAT-VN 361

Query: 405 TYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           T L      K  +     +  L +    +        K + I  ++   I   + +RE  
Sbjct: 362 TNLIFFEKGKPTKEIWYYEHTLPDGQKAY-------SKTKPIRIEEFEPIKQWWKNREES 414

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADIT-WRKLSPLHQSFWLDILKP 521
           + +  +  +T       + R   +        +  +E +I     +     +    I++ 
Sbjct: 415 EVAWKVSMQT------IIDRNYDLDVKNPNKKVEEVELNIGKILSILKTENNKVSTIIQE 468

Query: 522 MMQQI 526
           +   +
Sbjct: 469 LENDL 473


>gi|295087099|emb|CBK68622.1| Type I restriction-modification system methyltransferase subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 553

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 86/491 (17%), Positives = 168/491 (34%), Gaps = 79/491 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
              ++  +I    L + L       L+  +S + +K           E+          +
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGNVKWETAYENLSDDERMLIQS 85

Query: 83  TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135
                +  L   +   NL        +   F      I E + D  ST         L++
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145

Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176
                             +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNADLHS------MECYDPSAGTGTLLMALSHQIGE------- 252

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290
                   Q++   ++ +         L  +       N  QG TL      S D    +
Sbjct: 253 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 306

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343
           +F + +SNPPF   +   ++ +          RF  G+P        SM     F+ H+ 
Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L+      G+ AIV+ +   F       E++I   ++++ ++   V++P+++F  T  
Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 415

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462
              +             KV LI+A+ L    ++  G K+  +NDD+  +I+  +  +E  
Sbjct: 416 NVSVLFFDK---SATTDKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAV 472

Query: 463 K-FSRMLDYRT 472
           + FS  + Y  
Sbjct: 473 EDFSVAVSYDE 483


>gi|225860525|ref|YP_002742034.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229258|ref|ZP_06962939.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255150|ref|ZP_06978736.1| type I restriction enzyme [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502306|ref|YP_003724246.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727295|gb|ACO23146.1| type I restriction enzyme [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237901|gb|ADI69032.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327390256|gb|EGE88597.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375]
          Length = 487

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 162/471 (34%), Gaps = 57/471 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++   A       +   L    +    
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L          +P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           + D + +RE     +    ++F            +++ LD+ G  + E +I
Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452


>gi|300933508|ref|ZP_07148764.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 315

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 91/241 (37%), Gaps = 26/241 (10%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                   V     H      L   G E   +T  +    + +  L  D        I+Q
Sbjct: 1   MFVQCAKFVERH--HESASRQLSVFGTEKTEDTVPLAKMNLALHGLSGD--------IRQ 50

Query: 279 GSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            ++  +D  +    F Y ++NPPF            K+ +     R   GLPK  +G+ L
Sbjct: 51  ANSYYEDPHSAVGAFDYVMANPPFNVD-------KIKKDQLAGDKRLPFGLPKADNGNFL 103

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++      L       GRA  V+++S    G AG  E EIR+ L+E+  ++ +VA+  + 
Sbjct: 104 WIQQFYAALSPE----GRAGFVMANSA---GDAGYSEKEIRKQLIESGTVDVMVAISPNF 156

Query: 398 FFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F+   +   LW L   K    R   V  I+A  ++  I    +       +    I+ +Y
Sbjct: 157 FYTVTLPVTLWFLDKAKVGTPREDTVLFIDARHIFRQIDRAHRDFTAEQIEFIANIVRLY 216

Query: 457 V 457
            
Sbjct: 217 R 217


>gi|167761881|ref|ZP_02434008.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC
           43183]
 gi|167700251|gb|EDS16830.1| hypothetical protein BACSTE_00224 [Bacteroides stercoris ATCC
           43183]
          Length = 553

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 135/355 (38%), Gaps = 49/355 (13%)

Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
             +               +    S+I+E+LI+ + +       ++ TP  +  +   LL+
Sbjct: 162 RALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLV 221

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
             +  L           YDP+ GTG  L    + + +               Q++   ++
Sbjct: 222 GDNADLHS------MECYDPSAGTGTLLMALSHQIGE--------ERCTIFSQDISQRSN 267

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWE 306
            +         L  +       N  QG TL      S D    ++F + +SNPPF   + 
Sbjct: 268 KMLK-----LNLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLRQFDFVVSNPPFKMDFS 322

Query: 307 KDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLANKLELPPNGGGRAAIV 359
             ++ +          RF  G+P        SM     F+ H+ N L+      G+ AIV
Sbjct: 323 DTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVINSLKKT----GKGAIV 373

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           + +   F       E++I   ++++ ++   V++P+++F  T     +            
Sbjct: 374 IPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGTNVSVLFFDK---SATT 428

Query: 420 GKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
            KV LI+A+ L    ++  G K+  +NDD+  +I+  +  +E  + FS  + Y  
Sbjct: 429 DKVILIDASKLGEEYKDANGLKKVRLNDDEIEKIVGTFQRKEAVEDFSVAVSYDE 483


>gi|169833672|ref|YP_001694009.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194397534|ref|YP_002037177.1| type I restriction-modification system subunit M [Streptococcus
           pneumoniae G54]
 gi|303254229|ref|ZP_07340340.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae BS455]
 gi|303260622|ref|ZP_07346586.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP-BS293]
 gi|303263067|ref|ZP_07348998.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP14-BS292]
 gi|303265334|ref|ZP_07351243.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS397]
 gi|303267090|ref|ZP_07352960.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS457]
 gi|303269335|ref|ZP_07355107.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS458]
 gi|168996174|gb|ACA36786.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae Hungary19A-6]
 gi|194357201|gb|ACF55649.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae G54]
 gi|301801397|emb|CBW34083.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae INV200]
 gi|302598832|gb|EFL65867.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae BS455]
 gi|302635767|gb|EFL66271.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638212|gb|EFL68683.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP-BS293]
 gi|302641107|gb|EFL71482.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS458]
 gi|302643352|gb|EFL73629.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS457]
 gi|302645106|gb|EFL75344.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae BS397]
          Length = 487

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++   A       +   L    +    
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPKELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           + D + +RE     +    ++F            +++ LD+ G  + E +I
Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452


>gi|15902493|ref|NP_358043.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae R6]
 gi|116516554|ref|YP_815962.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae D39]
 gi|148993496|ref|ZP_01822987.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|149003727|ref|ZP_01828572.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|149005623|ref|ZP_01829362.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|149012612|ref|ZP_01833609.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|149026394|ref|ZP_01836532.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|168485629|ref|ZP_02710137.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1087-00]
 gi|168488198|ref|ZP_02712397.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP195]
 gi|225856228|ref|YP_002737739.1| type I restriction enzyme [Streptococcus pneumoniae P1031]
 gi|237649414|ref|ZP_04523666.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821513|ref|ZP_04597358.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|307126723|ref|YP_003878754.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae
           670-6B]
 gi|322387161|ref|ZP_08060771.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|15458017|gb|AAK99253.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus pneumoniae R6]
 gi|116077130|gb|ABJ54850.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae D39]
 gi|147758289|gb|EDK65290.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147762563|gb|EDK69523.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|147763417|gb|EDK70354.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|147927865|gb|EDK78886.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|147929277|gb|EDK80277.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|183571120|gb|EDT91648.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183572897|gb|EDT93425.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae SP195]
 gi|225724994|gb|ACO20846.1| type I restriction enzyme [Streptococcus pneumoniae P1031]
 gi|306483785|gb|ADM90654.1| type I restriction enzyme EcoEI M protein [Streptococcus pneumoniae
           670-6B]
 gi|321141690|gb|EFX37185.1| type I restriction-modification system DNA-methyltransferase
           [Streptococcus infantis ATCC 700779]
 gi|332074323|gb|EGI84799.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17570]
 gi|332076346|gb|EGI86809.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA41301]
 gi|332076951|gb|EGI87413.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA17545]
 gi|332204533|gb|EGJ18598.1| methyltransferase small domain protein [Streptococcus pneumoniae
           GA47901]
          Length = 487

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 161/471 (34%), Gaps = 57/471 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++   A       +   L    +    
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           + D + +RE     +    ++F            +++ LD+ G  + E +I
Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452


>gi|152997208|ref|YP_001342043.1| N-6 DNA methylase [Marinomonas sp. MWYL1]
 gi|150838132|gb|ABR72108.1| N-6 DNA methylase [Marinomonas sp. MWYL1]
          Length = 545

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 148/458 (32%), Gaps = 79/458 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
               R L+   E           AF     D +    +   +F N S   L         
Sbjct: 35  LMFARMLDMQEEAEERKANRTGKAFVRLFPDTKEGQLLRWKNFKNLSGKDLHKHLKNEVY 94

Query: 98  NNLESYIASFSDNAKAIFED--FDFSSTIAR-LEKAGLLYK---ICKNFSGIELHPDTVP 151
                       +   + ED        I+  +E A L  K   +      +        
Sbjct: 95  PYFSKL--GQVADIDQVGEDTPVKAMGHISDYMEDADLEIKNESVLVAALEMVDSLPLNQ 152

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V  +IYE+L+ +  +        F TPR ++     ++           P    T+ D
Sbjct: 153 SDVKGDIYEYLLSKLTTAG--INGQFRTPRHIIDAMIEII----------DPQPWDTICD 200

Query: 212 PTCGTGGFLTDAMNHVADCGSH----------------------HKIPPILVPHGQELEP 249
           P+CGT GFL   M ++    +                        +     +  G + + 
Sbjct: 201 PSCGTAGFLARTMEYLNRKHTSPENIWTDEEGNQHYPGDLLENYREHISDDMFWGFDFDT 260

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGK 303
               V    M++  +          N+    TL+K             F   L+NPPF  
Sbjct: 261 TMLRVSSMNMMLHGVNG-------SNVLYQDTLNKSIRENFPQQEENFFDVILANPPF-- 311

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           K   D+     E  +         + K     +LF+ H+   L+     GGRAA+++   
Sbjct: 312 KGSLDETNTNPELLS---------MVKTKKTELLFVAHILRSLK----LGGRAAVIVPDG 358

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
            LF   +     ++R+ L+EN+ +E I++LP+ +F     ++T + + +   T E   +V
Sbjct: 359 VLF--GSSKAHQQLRQELIENNQLEGIISLPSGVFKPYAGVSTAILLFTKGGTTE---RV 413

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              +         +   KR  +  +    + D     +
Sbjct: 414 WFYDLQADGL---SLDDKRTPLKGEGTNDLPDAIAKWK 448


>gi|261378715|ref|ZP_05983288.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685]
 gi|269144869|gb|EEZ71287.1| type I restriction enzyme M protein [Neisseria cinerea ATCC 14685]
          Length = 533

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/507 (18%), Positives = 190/507 (37%), Gaps = 73/507 (14%)

Query: 1   MTE--FTGSAASLANFIWKN-AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           MTE  FT    +L + +    A    G+    +F  +I    L + L    +     +R+
Sbjct: 1   MTEQYFTEQTKALIDSLKTICANYGLGN-DGNEFK-IISQAFLYKFLNDKYDFEVKQIRK 58

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS----------- 106
           +        ++++    + G +     E+S+  L       +                  
Sbjct: 59  ENPDEPIEFVNMD----IEGKTAVLKPEHSIKYLSEQQNGADFAKLFDDTLTDIAACNAE 114

Query: 107 -FSDNAKA-----IFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            FS   +      +FE      +    R +    L      FS   +            I
Sbjct: 115 LFSVKTEGGAKIVLFERISQYITDEGRRDDFCRALISKLAGFSFEAIFAQKFDFFA--TI 172

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+LI+ + S       ++ TP  V  +   +L+  +      S      +YDP+ G+G 
Sbjct: 173 FEYLIKDYNSNSGGKYAEYYTPHAVARIMADILVPEEVRGQIRS----VDVYDPSAGSGT 228

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L +  + + +           + + Q++  ++  +         L  +       N+ Q
Sbjct: 229 LLMNVAHAIGE--------DKCMIYTQDISQKSSNLLR-----LNLILNNLVHSLNNVVQ 275

Query: 279 GSTLSKDLFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           G+T+            K+F + +SNPPF   +   +D +E E       RF  G+PKI  
Sbjct: 276 GNTILSPAHKDASGRLKKFDFIVSNPPFKLDFSDFRDQLEDE---ENCERFFAGIPKIKP 332

Query: 334 GSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                     LF+ H+   L+      G+AAIVL +   F       + +IR  L+EN +
Sbjct: 333 KKKEKMEIYQLFIQHILFSLKE----NGKAAIVLPTG--FITAQSGIDKKIREHLVENKM 386

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  +V++P+++F  T     +  +        +  V LI+A+ L T    +  ++ +++ 
Sbjct: 387 LAGVVSMPSNIFATTGTNVSILFIDK----ANKDGVVLIDASGLGTKTSVDENQKTVLSR 442

Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRT 472
            + ++I + +  ++  + FS ++ Y  
Sbjct: 443 VEEQKICNTFTHKQVVEDFSVVVGYDE 469


>gi|332299058|ref|YP_004440980.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
 gi|332182161|gb|AEE17849.1| Site-specific DNA-methyltransferase (adenine-specific) [Treponema
           brennaborense DSM 12168]
          Length = 509

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/514 (15%), Positives = 170/514 (33%), Gaps = 76/514 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  +      +    E    +     +   F   A     + S+   + L       
Sbjct: 34  LFLKVFDA-----KEEEWELKKGYVPVIPEGFRFRDWADLRKEDGSKDLANRLTGDKLIQ 88

Query: 99  NLESYIASF----------------SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
            + + +  F                SD+ KA+        +   ++    L ++    + 
Sbjct: 89  FVNNTLFPFLQGKPVSVNDKEHLFTSDDPKALIVREFMGESQNYMKDGVKLRQLVNEIAD 148

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I+     +     ++ YE L+ +      +   +F TPR +       +           
Sbjct: 149 IDFDDAGIK-HDFNDFYETLL-KGLQNGGKATGEFYTPRAITKFICDHV----------D 196

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGML 260
           P +   + D  CGTGGFL +A++H+       K         +G E +   + +    ML
Sbjct: 197 PKIGERVADFACGTGGFLAEAISHLMAQAKSPKDITTIQNSIYGIEWKQLPYMLATTNML 256

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +  ++       + +I  G  L+ ++       +++  L NPPFG            E  
Sbjct: 257 LHDID-------NPDIVHGDGLALNVLNLQPKDKYNCILMNPPFG-----------GEFN 298

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             +L  F   L       + F+  +   LE      GR  +VL    LFN    + +  +
Sbjct: 299 KSDLQNFPDDLASSESADL-FVARIIYCLEKD----GRCGLVLPDGLLFNSD--NSKVNL 351

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           ++ L+    +  I+ LP+ +F   T+I T L         E     ++    D+   +++
Sbjct: 352 KKKLMTECNLHTIIRLPSSVFAPYTSINTNLLFFDKTGKTEEIWFYRM----DMPEGVKH 407

Query: 437 EGKKRRIINDDQRRQILDIYVSREN--GKFSRMLDYRTFGYRRIKVLRPLRMSFILD--- 491
              K   I  +  + + + + +R     +       +TF  ++          F LD   
Sbjct: 408 F-NKTNPIKREDMKCVDEWWNNRVEIADEKESETSTQTFKAKKYTFAEIEERGFDLDLCG 466

Query: 492 --KTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
             +     L  + T +      +S    + + + 
Sbjct: 467 YPEEEDVVLTPEETIKNYKERRESLEAKLDEKLA 500


>gi|254779131|ref|YP_003057236.1| Type I restriction enzyme M protein [Helicobacter pylori B38]
 gi|254001042|emb|CAX28986.1| Type I restriction enzyme M protein [Helicobacter pylori B38]
          Length = 543

 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 84/552 (15%), Positives = 185/552 (33%), Gaps = 85/552 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT--- 83
              ++  +I    L + L       +     +      +  D + F K     F+ T   
Sbjct: 32  DGNEYK-IITQCFLYKFLCD-----KFEFFFEQEFPNKTIRDYKDFKKEEKEDFFLTLSD 85

Query: 84  -------SEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL---- 127
                   +  LS L   +  +N     L++     S N   +F       T   L    
Sbjct: 86  KKLPKLSYDELLSYLFEKHFNDNDLHLKLDAIFNRISSNNAELFNTKSTDKTTIALFESV 145

Query: 128 -----EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEG 173
                E++        L    KNF+  +   +          + I+E+L++ + +     
Sbjct: 146 SPYINEESKRANFTRSLLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGK 205

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             ++ TP  +  +   LL++         P     +YDP+ GTG  L    + +      
Sbjct: 206 YAEYYTPLSIASIIAKLLINE--------PTQSVKIYDPSAGTGTLLMALAHQI------ 251

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--- 290
                    + Q++  ++  +    +++  L    R        +G+TL     +     
Sbjct: 252 --GTTSCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLINPYHSKDYKG 304

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLA 343
           +  Y +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  
Sbjct: 305 KMDYIVSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCL 359

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L       G+ AI++ +   F       E++I + L++  L+  ++ +P+ +F  T  
Sbjct: 360 NMLSHK----GKGAIIVPTG--FISAKSGIENKIVKHLVDERLVYGVICMPSQVFANTGT 413

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENG 462
              +       + +   +V LI+A+ L         K+  +       IL+ + ++ +  
Sbjct: 414 NVSIIFFQKTPSAK---EVILIDASKLGEEYTENKNKKTRLRTSDMDLILETFQNKTKKA 470

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
            F  ++ +     +   +              +++ E +   ++ S    S + +     
Sbjct: 471 DFCALVSFDEITEKNYSLNPGQYFIIEDTSEKISQAEFENLMQQYSSELTSLFDESQSLQ 530

Query: 523 MQQIYPYGWAES 534
            + +   G    
Sbjct: 531 QEILETLGNLNY 542


>gi|253563526|ref|ZP_04840983.1| type I restriction-modification system methyltransferase subunit
           [Bacteroides sp. 3_2_5]
 gi|251947302|gb|EES87584.1| type I restriction-modification system methyltransferase subunit
           [Bacteroides sp. 3_2_5]
 gi|301162172|emb|CBW21717.1| putative modification protein of type I restriction-modification
           system [Bacteroides fragilis 638R]
          Length = 553

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/491 (17%), Positives = 168/491 (34%), Gaps = 79/491 (16%)

Query: 27  KHTDFGKVILPFTLLRRLECA----LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
              ++  +I    L + L       L+  +S + +K           E+          +
Sbjct: 27  DGNEYK-IITQVFLYKFLNDKFGYELKNAKSEIAKKLTGDVKWETAYENLSDDERMLIQS 85

Query: 83  TSEYSLSTLGSTNTRNNL------ESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYK 135
                +  L   +   NL        +   F      I E + D  ST         L++
Sbjct: 86  AISPDVPMLEPYHLIANLWNQQGKGDFDTIFDSTMTDIAEQNADIFSTQTTANTKIPLFE 145

Query: 136 ------------------ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAED 176
                             +               +    S+I+E+LI+ + +       +
Sbjct: 146 ALTPFVTDSAQRAPFARALVDKLVNFSFEEAFAQNYDFFSSIFEYLIKDYNTAGGGKYAE 205

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  +  +   LL+  +  L           YDP+ GTG  L    + + +       
Sbjct: 206 YYTPHAIATIMARLLVGDNVDLHS------MECYDPSAGTGTLLMALSHQIGE------- 252

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGK 290
                   Q++   ++ +         L  +       N  QG TL      S D    +
Sbjct: 253 -ERCTIFSQDISQRSNKMLKL-----NLLLNGLVSSLDNAIQGDTLVSPYHKSDDGQQLR 306

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK---ISDGSML----FLMHLA 343
           +F + +SNPPF   +   ++ +          RF  G+P        SM     F+ H+ 
Sbjct: 307 QFDFVVSNPPFKMDFSDTREKIAA-----MPARFWAGVPNVPAKKKESMAIYTCFIQHVI 361

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           N L+      G+ AIV+ +   F       E++I   ++++ ++   V++P+++F  T  
Sbjct: 362 NSLKKT----GKGAIVIPTG--FITAKSGIENKILHKIVDDKVVFGCVSMPSNVFANTGT 415

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRIINDDQRRQILDIYVSRENG 462
              +             KV LI+A+ L    ++  G K+  +ND++  +I+  +  +E  
Sbjct: 416 NVSVLFFDR---SATADKVILIDASKLGEEYKDANGLKKVRLNDEEIEKIVGTFQRKEAV 472

Query: 463 K-FSRMLDYRT 472
           + FS  + Y  
Sbjct: 473 EDFSVAVSYDE 483


>gi|30250416|ref|NP_842486.1| hsdM; type I restriction modification enzyme methylase subunit
           [Nitrosomonas europaea ATCC 19718]
 gi|30181211|emb|CAD86409.1| hsdM; type I restriction modification enzyme methylase subunit
           [Nitrosomonas europaea ATCC 19718]
          Length = 553

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 81/557 (14%), Positives = 177/557 (31%), Gaps = 98/557 (17%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS------- 87
           I     ++RL+      +     +           E          +  +E         
Sbjct: 34  ITYLLFMKRLDEL--DQKRQADARDGWSDPYQSKFEGTWIPPEERNWPVAEQRPIDKRTL 91

Query: 88  ----LSTLGSTNTRNNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFS 141
                  + +     +++  +  F  +      +F     + +  + K  LL +  K   
Sbjct: 92  RWGEFKRMQAEEMLQHVQGKVFPFLKDLNGAESNFTHHMKNAVFIIPKPALLVEAVKTID 151

Query: 142 GI--ELHPDTVPD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
            I   +  D+  +      +  ++YE L+    +        F TPR ++ L   L+   
Sbjct: 152 EIFEVMEKDSRENGQSFQDIQGDVYEMLLAEIATAGK--NGQFRTPRHIIKLMAELV--- 206

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------------------A 228
                   P +   + DP CGTGGFL  A  ++                          A
Sbjct: 207 -------QPQLGHKIADPACGTGGFLLGAYQYIVTQLAINAGTQTLTPDEDGFTRTSVAA 259

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +        G +++     + +  +++  +E         +I    TLSK    
Sbjct: 260 AFDEKRQAILASSLWGYDIDQTMVRLGLMNLMMHGIE-------EPHIDYKDTLSKSYTE 312

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              +   L+NPPF      DK  + +  +              +   +LF+ ++   L+ 
Sbjct: 313 EAEYDIVLANPPFTGSI--DKGDINENLQL-----------STTKTELLFVENIYRLLKK 359

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GG A +++    LF   +G    ++R+ L+E+  ++A++ LP+ +F     ++T +
Sbjct: 360 ----GGTACVIVPQGVLF--GSGKAFKDLRQTLVEHCDLKAVITLPSGVFKPYAGVSTAI 413

Query: 408 WILS-----NRKTEER-RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            + +       K  +     V          S+ ++  K+    D   + I+  Y +R+ 
Sbjct: 414 LLFTKVWGMKDKVAKPATEHVWFYEMAADGYSLDDKRTKQEGYGD--LQDIIAKYHARDA 471

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLR--MSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              +       F   R  +             +     ++ D     L  L Q+   D+ 
Sbjct: 472 TTDTNRTAKC-FMVPRADIESENYDLSLSRYKEDVFEEVQYDAPGVILDRLIQAEVGDVD 530

Query: 520 KPMMQQIYPYGWAESFV 536
           +  + ++      E   
Sbjct: 531 EAELAKVQSGIVRELLE 547


>gi|148998187|ref|ZP_01825656.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|168482752|ref|ZP_02707704.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168490596|ref|ZP_02714739.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC0288-04]
 gi|168492671|ref|ZP_02716814.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC3059-06]
 gi|168576583|ref|ZP_02722457.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae MLV-016]
 gi|221231345|ref|YP_002510497.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|225854061|ref|YP_002735573.1| type I restriction enzyme [Streptococcus pneumoniae JJA]
 gi|225858347|ref|YP_002739857.1| type I restriction enzyme [Streptococcus pneumoniae 70585]
 gi|307067140|ref|YP_003876106.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|147755830|gb|EDK62874.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|172043562|gb|EDT51608.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183574880|gb|EDT95408.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183577008|gb|EDT97536.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577709|gb|EDT98237.1| type I restriction enzyme EcoEI M protein (M.EcoEI) [Streptococcus
           pneumoniae MLV-016]
 gi|220673805|emb|CAR68307.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|225720338|gb|ACO16192.1| type I restriction enzyme [Streptococcus pneumoniae 70585]
 gi|225722751|gb|ACO18604.1| type I restriction enzyme [Streptococcus pneumoniae JJA]
 gi|306408677|gb|ADM84104.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|332203680|gb|EGJ17747.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA47368]
          Length = 487

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/471 (16%), Positives = 163/471 (34%), Gaps = 57/471 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++           ++
Sbjct: 92  ELKELEITSIMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L          +P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           + D + +RE     +    ++F            +++ LD+ G  + E +I
Sbjct: 407 VRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 452


>gi|329119168|ref|ZP_08247858.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464727|gb|EGF11022.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 500

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 136/359 (37%), Gaps = 50/359 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            + IF+D         ++   LL ++      I+   DT        IYE +++    + 
Sbjct: 109 VRDIFQDAK-----NFMKNGTLLRQLINAVDQIDF-DDTKERHAFGEIYETILK--SLQS 160

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +  A +F TPR V      ++          +P +  T+ D   GTGGFL  A+N +   
Sbjct: 161 AGNAGEFYTPRAVTDFMVQVI----------APKLGETVADFAAGTGGFLVSALNALEPQ 210

Query: 231 --GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---D 285
                 +       +G E +P  H + +  +++  ++       S  I+ G+ L +   D
Sbjct: 211 VKTPKDRETLNQSLYGIEKKPLPHLLGITNLILHDID-------SPRIRHGNALEQNVRD 263

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +         L NPP+G K  +                F   L + S+ + LF+     +
Sbjct: 264 VQPRDLHDIILMNPPYGGKELELIKQN-----------FPAEL-RSSETADLFIALALYR 311

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIA 404
           L+     GGRAAI++    LF         + R  LL +  +  IV LP  +F   T+I 
Sbjct: 312 LK----AGGRAAIIIPDGFLFGNDTAKTALKTR--LLTDFDLHTIVRLPKSVFAPYTSIT 365

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           T +   +     +R  +       D+  S R    K + +  +     L  + +R+  K
Sbjct: 366 TNILFFNKPAQGQRPSEKLWFYRVDI-PSDRKAFSKTKPMQLEHFSDCLSWWHNRKEIK 423


>gi|257454706|ref|ZP_05619961.1| type I restriction modification system M subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257447887|gb|EEV22875.1| type I restriction modification system M subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 321

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 102/288 (35%), Gaps = 44/288 (15%)

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPETH 252
             P    T+ DP CGT GFL  A  ++ D             K        G + +    
Sbjct: 6   MQPKPTDTICDPACGTAGFLVAASEYLNDHYQSEIFANADAAKRYNNGTFFGYDFDSTML 65

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKD 310
            +    ML+  +E       + NI+   +LS+        +F   L+NPPF    + D  
Sbjct: 66  RIGSMNMLLHGVE-------NPNIENRDSLSQ-AHADIADKFSLILANPPFAGSLDYDST 117

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
           A                  K     +LF+      L+     GGRAA+++    LF   +
Sbjct: 118 AKNL-----------LATVKTKKTELLFIALFLRMLK----IGGRAAVIVPDGVLF--GS 160

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
                 +R+ L+E   +EAI+++P+ +F     ++T + I +   +     KV   +   
Sbjct: 161 SIAHKTLRQELVEKQQLEAIISMPSGVFKPYAGVSTAIVIFTKTMSG-GTDKVWFYDMQA 219

Query: 430 LWTSIRNEGKKRRIINDDQ----RRQILDIYVSRENGKFSRMLDYRTF 473
                 +   KR  + D         I+  +   EN +     +   F
Sbjct: 220 DGY---SLDDKRTPLGDSHEQNNIPHIIARFHHLENEENRSRSEQSFF 264


>gi|303258215|ref|ZP_07344222.1| type I restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
 gi|302858968|gb|EFL82052.1| type I restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
          Length = 547

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 103/580 (17%), Positives = 197/580 (33%), Gaps = 95/580 (16%)

Query: 1   MTEFTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLL-RRLECAL-EPTRSA--- 54
           M+E       L + +    +    G+    ++   I+    L + L        ++A   
Sbjct: 1   MSEIKEKTVQLIDALKATCQAYGLGN-DGNEYK--IITQVFLYKFLNDKFGYEVKNAPGV 57

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS------FS 108
           + E+        +      +   +   +     +  L   +   NL +  +       F 
Sbjct: 58  LSEQLRNSEKWELAYADLSEEERFFLQSAISADVPILEPEHLIANLWNQQSKGDFDLIFD 117

Query: 109 DNAKAI-FEDFDFSSTIARLEKAGLLYK------------------ICKNFSGIELHPDT 149
                I F++ D  ST         L++                  +             
Sbjct: 118 STMTDIAFKNADIFSTQTTANTKIPLFEPLTVFVTDPSQRAAFARALVDKLVNFSFEEAF 177

Query: 150 VPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                  S+I+E+LI+ + +       ++ TP  +  +   LL+     L          
Sbjct: 178 GQSYDFFSHIFEYLIKDYNTAGGGKYAEYYTPHAIATIMARLLVGDATNLHSIE------ 231

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            YDP+ GTG  L    + + +               Q++   ++ +         L  + 
Sbjct: 232 CYDPSAGTGTLLMALAHQIGE--------DRCTIFSQDISQRSNKMLK-----LNLLLNG 278

Query: 269 RRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                 N  QG TL      S D    ++F + +SNPPF   +   ++ +          
Sbjct: 279 LVSSLDNAIQGDTLVSPYHKSDDGKELRQFDFVVSNPPFKMDFSDTREKIAA-----MPV 333

Query: 323 RFGPGLPKI------SDGSM-LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           RF  G+PK+      S      F+ H+ N L+      GR AIV+ +   F       E+
Sbjct: 334 RFWAGVPKVPKKKKESMAIYTCFIQHVLNSLKD----NGRGAIVVPTG--FITAKSGIEN 387

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            I + L+++ LI   V++P+++F  T     +       + E   KV LI+A+ L    +
Sbjct: 388 RILKKLVDDKLIYGCVSMPSNVFANTGTNVSVLFFDKSGSSE---KVILIDASKLGEEYK 444

Query: 436 -NEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTF----------GYRRIKVLRP 483
            + G K+  +N  +  +I+  +  R N + FS  +D+              Y  IK+   
Sbjct: 445 DSNGLKKVRLNPVEVNKIITTFQKRLNVEDFSVAVDFNEIKEKGYSLSAGQYFEIKIEYE 504

Query: 484 LRMSFILDKTGLARLEADIT-WRKLSPLHQSFWLDILKPM 522
                   K  +   E+++T     S   Q   L+ LK +
Sbjct: 505 DISEEEF-KNRMKEYESNLTDLFNKSNDLQKKILESLKNL 543


>gi|189345678|ref|YP_001942207.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
 gi|189339825|gb|ACD89228.1| N-6 DNA methylase [Chlorobium limicola DSM 245]
          Length = 846

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 139/410 (33%), Gaps = 62/410 (15%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y      + + E       +   N   Y  +     +   +    +  +S+    + E+ 
Sbjct: 37  YKFMDDMDAESEELGGKRKFFTGNFVRYGWAKFMDRSLGGH--EMLGLYSEGIAKMPENP 94

Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              +    + K   L     +  K F  I           + + +E+L+   GS+    A
Sbjct: 95  GIPALFRDIFKNAYLPYRDPETLKAFLKIIDEFTYDHSERLGDAFEYLLSVLGSQG--DA 152

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231
             F TPR ++     +L+          P    T+ DP CGT GFL  A  H+       
Sbjct: 153 GQFRTPRHIIDFMVEILV----------PQKNETILDPACGTAGFLISAYKHILRTNTDT 202

Query: 232 -------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     K        G ++ P+   + +  + +             +I +  TLS 
Sbjct: 203 DGHSTLTPDEKGRLARNFKGYDISPDMVRLSLVNLYLHGF-------TDPHIFEYDTLSS 255

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           +    +     L+NPPF    +      +         RF     +     +LF+ ++A 
Sbjct: 256 EERWNEFADVILANPPF-MSPKGGIKPHK---------RFSIQAKRS---EVLFVDYMAE 302

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTN 402
            L       GRA I++    +F  +    E  +R+ L+EN L+ A+++LP   F  +   
Sbjct: 303 HLTPA----GRAGIIVPEGIIFQSQMAYKE--LRKMLVENSLV-AVISLPAGCFNPYS-G 354

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           + T + IL      +           D +      G +RR I  +   Q+
Sbjct: 355 VKTSILILDKSLARQSDTIAFFKVENDGF----GLGAQRRAIEKNDLPQV 400


>gi|229827684|ref|ZP_04453753.1| hypothetical protein GCWU000182_03073 [Abiotrophia defectiva ATCC
           49176]
 gi|229788144|gb|EEP24258.1| hypothetical protein GCWU000182_03073 [Abiotrophia defectiva ATCC
           49176]
          Length = 237

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 27/223 (12%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IW  A  L G+   +++  V+L    L+ +    +   +A+ E+  
Sbjct: 1   MANKNTAVIGFEKQIWDAACVLRGNMDASEYKSVVLGLIFLKYISDRFKDKYNALVEE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN----TRNNLES---YIASFSDNAKA 113
              G   + +     +   F+  +    S + +          ++     I   +   K 
Sbjct: 59  ---GDGFEEDIDEYTSEGIFFVPAGAHWSEIAAKAHTPEIGKVIDDAMRAIEKENKRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I +        ++   YE+ +  F  +  + 
Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIRMTKHGSEKDILGRTYEYCLSMFAEQEGKR 171

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             +F TP  VV     +L                 +YDP CG 
Sbjct: 172 GGEFFTPSCVVRTLVEIL-----------KPFKGRVYDPCCGF 203


>gi|46143840|ref|ZP_00133970.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 252

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 27/211 (12%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKE 315
             M +  +  D       +I  G TL K  F   + F   +SNPP+  KW  D D     
Sbjct: 1   MNMFLHNINYDKF-----DITLGDTLLKPQFGDSKPFDAIVSNPPYSVKWVGDGDPT--- 52

Query: 316 HKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                  RF P   L   S     F++H  + L    +  GRAAIV      + G A   
Sbjct: 53  --LINDERFAPAGVLAPKSKADFAFILHALSYL----SARGRAAIVTFPGIFYRGGA--- 103

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E +IR++L++N+ +E +++L  +LFF T+IA  + +LS  KT+    K Q I+A+ ++  
Sbjct: 104 EQKIRQYLVDNNFVETVISLAPNLFFGTSIAVNILVLSKNKTDS---KTQFIDASGIFKK 160

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             N      ++ D+   +IL ++  + +   
Sbjct: 161 ETN----NNVLTDEHIAEILKLFGDKADVDH 187


>gi|90579610|ref|ZP_01235419.1| putative type I restriction enzyme M protein [Vibrio angustum S14]
 gi|90439184|gb|EAS64366.1| putative type I restriction enzyme M protein [Vibrio angustum S14]
          Length = 525

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 150/464 (32%), Gaps = 108/464 (23%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-IASFSDNAKA 113
                     +  + E      G  F        +         N             K 
Sbjct: 35  YLMYARMLDMNERNDEKRSARTGKPF----NRRFADDKQHIRWENFRHLGAEKLYPLVKD 90

Query: 114 -IFEDFDFSSTIARL------------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            +F +F   ++   L            +K  LL K  +  S + L        V  ++YE
Sbjct: 91  EVFPNFKDLTSDDTLFADFMKDAQLMIQKPSLLVKAVELVSELPLENK----DVKGDLYE 146

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +  +        F TPR ++     +L   +             + DP CGTGGFL
Sbjct: 147 YLLSKLTTAG--INGQFRTPRHIIRAMIEMLDVEE----------THRICDPACGTGGFL 194

Query: 221 TDAMNHVADCGSHHKIPPILV-------------------------------------PH 243
           +    ++ +  S  +                                            H
Sbjct: 195 SSTYEYLLEKYSSPEGTEKEQAFDKEGKPVLDVHGNPVFNYLYAGDLLEKRTHIDYDMFH 254

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKR---FHYCLS 297
           G + +     V    +++  ++         +I    TLS+   + F  +    F   L+
Sbjct: 255 GFDFDSTMLRVAAMNLVMHGVK-------QPDIHYQDTLSQSFIERFPDEAKNGFDIILA 307

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF  K   D++ V+              + K     +LF+  +   L++    GGR A
Sbjct: 308 NPPF--KGSLDEEDVDPAILK---------VVKTKKTELLFVALIQRMLKV----GGRTA 352

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
            ++    LF   +      +R+ L+E++ +EA+++LP+ +F     ++T + I +   + 
Sbjct: 353 TIVPDGVLF--GSSKAHHTLRKHLVEDNQLEAVISLPSGVFKPYAGVSTAILIFTKGGS- 409

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
                V   +        ++   KR  I D+    ++  Y + +
Sbjct: 410 --TNNVWFYDVQADG---KSLDDKRTPIKDNDLPDLVKQYKAYQ 448


>gi|237654635|ref|YP_002890949.1| N-6 DNA methylase [Thauera sp. MZ1T]
 gi|237625882|gb|ACR02572.1| N-6 DNA methylase [Thauera sp. MZ1T]
          Length = 356

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 14/159 (8%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E+AGLLY + + F+ IE HP  V +  M  ++E LIR+F    +E A +  TPR+++ L 
Sbjct: 58  EQAGLLYLVVEKFAHIEPHPRRVDNVHMGLVFEELIRKFAEISNETAGEHFTPRELIRLM 117

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTC--GTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
            + L   DD      PG++RT+YDPT   GTG  L+ A  H+ +     ++       GQ
Sbjct: 118 VSPLFIEDDEALS-KPGIVRTIYDPTAGTGTGRMLSVAGEHLHEIKPGARL----TMFGQ 172

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           EL PE++A+C A MLI+  +          I  G+TLS+
Sbjct: 173 ELNPESYAICKADMLIKGQDVRS-------IVLGNTLSE 204



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 8/87 (9%)

Query: 587 LTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQP 646
           L + ENVP  E +Q +F REV  H PDA+ID            R+GYEI  NR FY ++P
Sbjct: 278 LRDAENVPLFEDVQAWFEREVLSHAPDAWIDHDK--------TRIGYEIPLNRHFYVFEP 329

Query: 647 SRKLQDIDAELKGVEAQIATLLEEMAT 673
            R L +IDA+LK    +I  ++E +A 
Sbjct: 330 PRPLAEIDADLKRSMDRIKQMIEGLAG 356



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 6/103 (5%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +  +L+  IW  A+ L GDFK +++G+VILPFT+LRRL+C L PT++AV  ++     + 
Sbjct: 2   NQQALSALIWSVADLLRGDFKQSEYGRVILPFTVLRRLDCVLAPTKAAVLVEHRDKEQAG 61

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                 + +    F +   +    + + +     E  I  F++
Sbjct: 62  -----LLYLVVEKFAHIEPHP-RRVDNVHMGLVFEELIRKFAE 98



 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 8/105 (7%)

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILK 520
             +R+   + FGYR I + RPLR     D   +   E    W +   L  +   W+D  K
Sbjct: 257 PIARVFRNQDFGYRTITIERPLR-----DAENVPLFEDVQAWFEREVLSHAPDAWIDHDK 311

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
             +           +V E  +        +K S   I   I    
Sbjct: 312 TRIG-YEIPLNRHFYVFEPPRPLAEIDADLKRSMDRIKQMIEGLA 355


>gi|15900423|ref|NP_345027.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111657646|ref|ZP_01408378.1| hypothetical protein SpneT_02001156 [Streptococcus pneumoniae
           TIGR4]
 gi|14971982|gb|AAK74667.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae TIGR4]
          Length = 487

 Score =  144 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 146/430 (33%), Gaps = 52/430 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++   A       +   L    +    
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITSNMPIRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSREN 461
           + D + +RE 
Sbjct: 407 VRDWWENREE 416


>gi|317485044|ref|ZP_07943926.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
 gi|316923579|gb|EFV44783.1| N-6 DNA methylase [Bilophila wadsworthia 3_1_6]
          Length = 486

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 83/492 (16%), Positives = 167/492 (33%), Gaps = 75/492 (15%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT---RNNLESYIAS-FSDNAKAI- 114
             +     D E+      Y               T      ++L  ++        K + 
Sbjct: 37  KIYDDREYDWEALEH--DYVSIIPDPCRWRNWADTGKALKGDDLIRFVDGMLLPTLKDLP 94

Query: 115 ----------FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                          F+     ++    L ++    +  +   D        +IYE +++
Sbjct: 95  IPPGCPLRKSIVKTVFTDIHNFMKDGVQLRQLLTEINECDF-NDPQEAHAFGSIYESILK 153

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
               + +  + +F TPR +       +                 + D  CGTGGFL  A 
Sbjct: 154 LL--QSAGSSGEFYTPRALTDFMARHVGLKLGD----------KVADFACGTGGFLNSAR 201

Query: 225 NHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             +         +       HG E +P  + +CV  +L+  ++          I+ G++L
Sbjct: 202 AWLEGQAKTNAQREILARSFHGTEKKPLPYLLCVTNLLLNGVD-------EPLIRYGNSL 254

Query: 283 SK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +K   D     +F   L NPP+G     ++  +++   +           + ++ + LFL
Sbjct: 255 TKSTGDYTEADKFDVVLMNPPYGGS---EQLTIQQNFPSNM---------RSAETADLFL 302

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           + +  +L+      GRAA+V+    LF G      +EI+R LL N  +  IV LPT +F 
Sbjct: 303 ILIMARLK----ATGRAAVVIPDGFLFGGGNK---TEIKRELLSNFNLHTIVRLPTSVFS 355

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIYV 457
             T+IAT +         +          T  +     EG K            + D+  
Sbjct: 356 PYTSIATNVLFFDGNGPTKE---------TWFYRVDMPEGYKHFSKTKPMLLEHLADL-D 405

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD-ITWRKLSPLHQSFWL 516
           +  + +    ++      R+        + +  D  G A+ + + +   +L   +++   
Sbjct: 406 AWWDKREPLEVNGSDKA-RKYSKEELEALQYNFDLCGFAQEDEEILPPAELIAHYKAERA 464

Query: 517 DILKPMMQQIYP 528
              K M + +  
Sbjct: 465 RHEKIMDEALGK 476


>gi|331002084|ref|ZP_08325603.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411178|gb|EGG90594.1| hypothetical protein HMPREF0491_00465 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 651

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 45/272 (16%)

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G  L +     A           +  + QE    T+ +    +++R +       L  
Sbjct: 14  GSGSLLINIGKTAAKYLDDAN---RIQYYAQEYNLNTYNLTRMNLVMRGI-------LPA 63

Query: 275 NI--QQGSTLSKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           NI  + G TL +D            +        +SNPP+ ++W+      +  +     
Sbjct: 64  NIFTRNGDTLKEDWPYFDESDPHSTYEPLYVDAVVSNPPYSQRWDPTGKDSDPRYVR--- 120

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                G+   S     FL+H    L+      G   IVL    LF G     E  IR+ L
Sbjct: 121 ----YGIAPKSKADYAFLLHDLYHLQP----NGIMTIVLPHGVLFRGGE---EGNIRKNL 169

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E + I+AI+ LP ++FF T I T + +L  ++       + +I+A+  +     +  K 
Sbjct: 170 IEQNNIDAIIGLPANIFFGTGIPTIVMVLRQKRE---NTDILIIDASKGF----KKDGKN 222

Query: 442 RIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
             +     R+I+D    R+N + +S+++  + 
Sbjct: 223 NKLRACDIRKIVDTIKERKNVEKYSKVVSLKD 254


>gi|315154176|gb|EFT98192.1| N-6 DNA Methylase [Enterococcus faecalis TX0031]
          Length = 411

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 148/420 (35%), Gaps = 80/420 (19%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRDVV 184
           L+    + K+ + F  IE              ++     F  E +  +  +   TP  V 
Sbjct: 28  LKNKDAVRKLFEKFLAIETDLS----------FDWFHEYFQEEHADRKQKKQDFTPNSVG 77

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            + + +L            G   +  D   GTGG              +   P       
Sbjct: 78  KVLSLIL------------GHSESTLDVAAGTGGLTI-------KKWWNDGQPTNNEYLC 118

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-----------------KDLF 287
           +EL        +  ++IR ++          +  G +LS                  +  
Sbjct: 119 EELSDRAVPFLLFNLMIRGMK--------AQVIHGDSLSGVTKKVYKISDYELTEINEEL 170

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANK 345
             ++    +SNPP+  KW+     ++         RF     L   +     FL+H   +
Sbjct: 171 AIEKVGAVISNPPYSAKWDASPTLLD-------DPRFSHYEKLAPKTKADFAFLLHGFYR 223

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+      G  A+VL    LF G A   E  IR+ LLE+  I+A++ LP +LFF T+I T
Sbjct: 224 LKDS----GTMAVVLPHGVLFRGAA---EGVIRKKLLEDGSIDAVIGLPANLFFGTSIPT 276

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            + +L   +       V  I+++  +      GK +  ++DD   +I+  Y  R++ + +
Sbjct: 277 VIIVLKKNRQTR---DVMFIDSSKEFDK----GKNQNSLSDDHINKIIHTYKERKDIEKY 329

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           + +  Y         +  P  +    ++  +   E     RK +        +++  + +
Sbjct: 330 AHLASYDEITENDFNLNIPRFVDTFEEEEPINPFELLADIRKTNEELAKAEKELVSMLDE 389


>gi|22477129|gb|AAM97371.1| DNA methylase [Streptomyces collinus]
          Length = 393

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 124/321 (38%), Gaps = 50/321 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L+ + +    I+          +  + +  +R   ++ +EG+  + TP D+  L     +
Sbjct: 12  LHALVQAIGSIQ---------RVGPLLDQCLRDLSADQAEGS-RYFTPDDMARLMVGAAV 61

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                     P     + DP CG+GG L ++  +V +   +  + P +   G+E    T 
Sbjct: 62  ----------PRDRHRVLDPVCGSGGLLVESHRYVRE---NVGLDPTMSLQGKEQHAHTS 108

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            V      +R + +            G +L+      +     L+N PF ++    +D  
Sbjct: 109 QVARMNFAVRGITAHVFP-------PGDSLADP--EPEPHDIILANLPFNQRDWAPEDKT 159

Query: 313 EKEHKNGE-----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           E++ +          R+    P     +  ++ H+A+ L       GRA  +++ S    
Sbjct: 160 ERDVRRSPSPIPVDPRWPEESPSKGSANSAWIQHIAHALAPA----GRAVFLMADSV--A 213

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-------ERRG 420
                    +R  LL +DL+E ++ALP  +F  +     LW+L+  K+        +RR 
Sbjct: 214 NSRQPVTRSVRERLLRDDLVECVIALPPRVFGHSKAPACLWVLNKDKSARPGWGARDRRR 273

Query: 421 KVQLINATDLWTSIRNEGKKR 441
           +V  INA   +  +     +R
Sbjct: 274 QVLFINARRAFEPVPKSRARR 294


>gi|303243808|ref|ZP_07330148.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1]
 gi|302485744|gb|EFL48668.1| N-6 DNA methylase [Methanothermococcus okinawensis IH1]
          Length = 500

 Score =  143 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 81/497 (16%), Positives = 164/497 (32%), Gaps = 99/497 (19%)

Query: 17  KNAEDLW---GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
              + L    G     D+ + +     L+  E           E+     G N +    +
Sbjct: 13  SACDILRKDDGTSGAMDYMEQLSWLLFLKVFESV-----EKELEETALMNGENYNP---I 64

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-------FEDFDFSST--- 123
               Y + N ++             +    +     N   +        ++  F      
Sbjct: 65  IDKKYRWSNWAKKDWIG-KPKECLKDFVDNVDEEIKNIDDLDNTLVYFIDNILFPHLRSL 123

Query: 124 -----------------IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
                              +++    L  +      I    D     V+S IYE L+   
Sbjct: 124 EGTPEREKIASIFKEISGNKMKSTYNLVDVINKIDNINT-DDYEDTHVLSQIYEELLLNM 182

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           G+E      +F TPR ++     ++           P +  T++DP  G+ GFL + + +
Sbjct: 183 GNEAG-WGGEFYTPRPIIRFIIKVI----------KPKIGETVFDPFGGSAGFLIETLKY 231

Query: 227 VADCGSHHKIPPIL-----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           + +   +  +           +G E +P  + +    M++  +       L+ N  + ++
Sbjct: 232 IQEELGNITVQENDILMHKTLYGHEKKPFPYLLGTMNMVLHGI-------LTPNYYRRNS 284

Query: 282 LSK-DLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           L   D+      +++   ++NPPFG           +E+K  +   F   +        L
Sbjct: 285 LGDEDIHNVPESEKYDIIITNPPFG----------GRENKKVQDN-FPHKIQST---EAL 330

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
            L ++  KL+     GGRA ++L    +  G        IR  LL    + AIV+LP  +
Sbjct: 331 ALQYIMRKLK----NGGRAGVILPEGQIMFGGKK--FKSIREELLNKFNVFAIVSLPQGV 384

Query: 398 F--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           F      + T +       + +             +       KK+R I D+  + +L+ 
Sbjct: 385 FSQMGAGVKTNIVFFEKTGSTKEI---------WYYELEGKYTKKQR-IKDEDFKDVLNK 434

Query: 456 YVSRENGKFSRMLDYRT 472
             +RE  + S ++    
Sbjct: 435 IKNREISENSWIVSIDE 451


>gi|147679037|ref|YP_001213252.1| hypothetical protein PTH_2702 [Pelotomaculum thermopropionicum SI]
 gi|146275134|dbj|BAF60883.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 251

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 25/218 (11%)

Query: 108 SDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           +   + IFE  DF++      +     LY + +  S   L    V   ++   YE+L+R+
Sbjct: 8   NPKLQGIFEQVDFNARAAGQPIIDNDRLYNLIQILSRHRLGLKDVEADILGRAYEYLLRK 67

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F     + A +F TP +V  L   +L           P     +YDP CG+GG L  ++ 
Sbjct: 68  FAEGQGQSAGEFYTPSEVAWLMALIL----------RPRPGDEIYDPACGSGGLLIKSVL 117

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              D          +  +GQE+   T A+      I  LE++        I+ G T+++ 
Sbjct: 118 ACRDAYGTDSQTAPVKIYGQEINYTTFAMAKMNAFIHDLEAE--------IRLGDTMARP 169

Query: 286 LFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
            FT      + F    +NP + +      +  E+    
Sbjct: 170 AFTNPDGSLRVFDKVTANPMWNRDTINPFNHPEEIFDL 207


>gi|148983890|ref|ZP_01817209.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147924037|gb|EDK75149.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799576|emb|CBW32129.1| type I restriction-modification system M protein [Streptococcus
           pneumoniae OXC141]
          Length = 496

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 162/480 (33%), Gaps = 66/480 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++   A       +   L    +    
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAH-AQNGERVLTGDELLDFVNNKLF 90

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L+    + +   +       F      ++   LL ++      ++           ++
Sbjct: 91  KELKELEITSNMPIRKTIIKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L           P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------DPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKDLF------------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           I  G+TL K++               ++F   + NPPFG                     
Sbjct: 251 IVHGNTLEKNVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNN 299

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F   L + S+ + LF+  +  +L+      GR  ++L    LF        + +++ L++
Sbjct: 300 FPAEL-RSSETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVD 351

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              +  I+ LP  +F   T I T +      K  E     +L +  D + +      K +
Sbjct: 352 EFNLHTIIRLPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTK 406

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
            +  +    + D + +RE     +    ++F            +++ LD+ G  + E +I
Sbjct: 407 PMKSEHFNPVRDWWENREEILEGKFYKSKSF-----TPSELAELNYNLDQCGFPKEEEEI 461


>gi|300956332|ref|ZP_07168630.1| N-6 DNA Methylase [Escherichia coli MS 175-1]
 gi|300316844|gb|EFJ66628.1| N-6 DNA Methylase [Escherichia coli MS 175-1]
          Length = 154

 Score =  143 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 23/164 (14%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-----FHYCL 296
             GQE    T ++    M +   +       +  I+ G T+       K      F    
Sbjct: 1   MFGQEAIGSTWSLAKMNMFLHGED-------NHKIEWGDTIRNPKLLDKNGDLMLFDIVT 53

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF             E +N + GRF  G+P  + G   F+ H+   L+    G GR 
Sbjct: 54  ANPPFSLD-----KWGHDEAENDKFGRFRRGVPPKTKGDYAFISHMIETLKP---GTGRM 105

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            +V+    LF G   S E +IR+ L++ +L++A++ LP  LF+ 
Sbjct: 106 GVVVPHGVLFRG---SSEGKIRQKLIDENLLDAVIGLPEKLFYG 146


>gi|182683454|ref|YP_001835201.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CGSP14]
 gi|182628788|gb|ACB89736.1| type I restriction-modification system, M subunit [Streptococcus
           pneumoniae CGSP14]
          Length = 487

 Score =  143 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 148/430 (34%), Gaps = 52/430 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       ++Y +     +   ++          T +  L  + +   +
Sbjct: 33  LLFLK-IYDSREMVWELEEDEYESIIPEELKWRNWAHAQNGERVLTGDELLDFVNNKLFK 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              E  I S     +       F      ++   LL ++      ++           ++
Sbjct: 92  ELKELEITSIMP-IRKTIVKSAFEDANNYMKNGVLLRQVINVIDEVDF-NSPEDRHSFND 149

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++   +  +    +F TPR        +L          +P +  ++ D  CGTG
Sbjct: 150 IYEKILKDIQNAGNS--GEFYTPRAATDFIAEVL----------NPKLGESMADLACGTG 197

Query: 218 GFLTDAMNHV--ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           GFLT  +N +      S           G E +   H + V  + +  ++          
Sbjct: 198 GFLTSTLNRLSSQRKTSEDTKKYNTAVFGIEKKAFPHLLAVTNLFLHEID-------DPK 250

Query: 276 IQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G+TL K+       ++F   + NPPFG                     F   L + S
Sbjct: 251 IVHGNTLEKNVREYTDDEKFDIIMMNPPFGGSE-----------LETIKNNFPAEL-RSS 298

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           + + LF+  +  +L+      GR  ++L    LF        + +++ L++   +  I+ 
Sbjct: 299 ETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGVK---TRLKQKLVDEFNLHTIIR 351

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LP  +F   T I T +      K  E     +L +  D + +      K + +  +    
Sbjct: 352 LPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPDGYKNF----SKTKPMKSEHFNP 406

Query: 452 ILDIYVSREN 461
           + D + +RE 
Sbjct: 407 VRDWWENREE 416


>gi|184155502|ref|YP_001843842.1| putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum IFO 3956]
 gi|183226846|dbj|BAG27362.1| putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum IFO 3956]
 gi|299783284|gb|ADJ41282.1| Putative type I site-specific deoxyribonuclease [Lactobacillus
           fermentum CECT 5716]
          Length = 457

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 132/359 (36%), Gaps = 47/359 (13%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + I   +++ + I         + R+ K   L ++        L            + + 
Sbjct: 77  AVIEDLNESIQRIL--------LLRIGKDKQL-QVFNEICESTLRLVRQQSDRF-VLLKA 126

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           +   +    S       TP  +  L   L      A           +YD T G GG L 
Sbjct: 127 MQAAYVDLESRLNGRTNTPDQINVLMAQL------ANLSFDGDEPVRIYDSTSGWGGSLL 180

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +    + +          +   GQEL  + +  C   M++  L+ D       N   G  
Sbjct: 181 EMRRVIPN-------SRKVRLLGQELNAKAYLFC--EMVLGLLDDDNTSHALNN---GDA 228

Query: 282 LSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           L  D  F        +++PP+  +W  D + +    + G   + G  LP  S     F++
Sbjct: 229 LVADWPFGDSGADVIINDPPYSMRWNPDPNLL----ERGIYHKIGV-LPPKSRADFAFVL 283

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    L    N  G   I L    LF G   S E++IR++LLE + IEA++ LP +L   
Sbjct: 284 HGLAHL----NDNGTMVIQLPHGVLFRG---SAEAKIRQYLLERNYIEAVIGLPANLQST 336

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           T I T + +L   +  +    V  I+A+D       + + R +++     +I++ Y   
Sbjct: 337 TAIPTMILVLRKNRKRK---DVLFIDASD---DEVKKARSRDLLSTSAVNKIVETYHKF 389


>gi|229824144|ref|ZP_04450213.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271]
 gi|229786498|gb|EEP22612.1| hypothetical protein GCWU000282_01448 [Catonella morbi ATCC 51271]
          Length = 424

 Score =  143 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 88/444 (19%), Positives = 152/444 (34%), Gaps = 58/444 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              I E+++  S +  L  +     I   F  +E              ++     F  E 
Sbjct: 9   IIGIAENYELPSKLLDLMLSNQRENIFNQFLELEQDLS----------FDWFTDYFQQEH 58

Query: 171 SEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            +  +     TP++V HL  ++             G   ++ D   GTGG      N   
Sbjct: 59  GDRDKLKQDFTPKEVAHLVNSI------------SGPATSVADICAGTGGLTIKKWN--- 103

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ---GSTLSKD 285
           +         +     + +      + +  M    +  D        I +   G   S  
Sbjct: 104 EQREAECFYYMEEFASRAIPILIFNIAIRNMNAEIVHCDALTQEVFGIYRLIPGDRFSTV 163

Query: 286 LFTGKR-----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFL 339
               +R     F   + NPP+   W  DK  +          RF G G+   S     F+
Sbjct: 164 EKVTERTGRTDFDAVIMNPPYSLTWSGDKSLIN-------DPRFSGYGVAPKSKADYAFI 216

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G    +L    LF G A   E EIR  L+    +E ++ LP +LF 
Sbjct: 217 LHGLAILKET----GTLVAILPHGVLFRGAA---EGEIRTELIRRRQLETVIGLPDNLFL 269

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I   L IL  ++ +E    V  I+A+  +      GK +  ++D+    IL  Y  R
Sbjct: 270 NTSIPVALLILKKKREDE---DVYFIDASKEFIK----GKAQNNLSDEHVDNILTAYRLR 322

Query: 460 EN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            N  KFS +            +  P  +     +  +   E   +  +     Q+  L++
Sbjct: 323 RNIDKFSNLAKPHEIESNDYNLNIPRYVDTFEPEPIIPMQELLDSLIQTEREIQTTELEL 382

Query: 519 LKPMMQQIYPYGWAESFVKESIKS 542
           L  M Q +     A++  KE ++ 
Sbjct: 383 LNFMRQLVGTTPEAQNQQKECVEK 406


>gi|313123146|ref|YP_004033405.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279709|gb|ADQ60428.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 491

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/485 (17%), Positives = 161/485 (33%), Gaps = 77/485 (15%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+  +      R  V E       S I      +      + T       L      
Sbjct: 35  MLFLKVYDD-----REKVWELTNDDYESIIPAGMHWRE-----WATDNKDGKALTGDELL 84

Query: 98  NNLESYIASFSDNA---------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + + + +     N          KAI +D  F      ++   LL ++       +   D
Sbjct: 85  DFVNNKLLPALKNITVTKDTPISKAIVKDA-FIDANNYMKNGVLLRQVVNVIDEQDFT-D 142

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                + ++IYE ++++  S  +    +F TPR +       L           P +   
Sbjct: 143 PEDRHMFNDIYEGILKQLQSAGNS--GEFYTPRALTDFIAETL----------KPKLGEK 190

Query: 209 LYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + D  CGTGGFLT  +N +         +        G E + + + + V  +L+  ++ 
Sbjct: 191 MADLACGTGGFLTSTLNLLKPQIKTVEDQKKYNEAVFGIEKKGQPYILAVTNLLLHDVD- 249

Query: 267 DPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                 + +I  G++L K+       ++F   + NPPFG     + D ++K         
Sbjct: 250 ------NPDIIHGNSLEKNITEYTEKEKFDIIMMNPPFGG---AELDTIKKNFPTDLQ-- 298

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   S+ + LF+  +  +L+      GR  ++L    +F+      +  I++ L  
Sbjct: 299 -------SSETADLFMDLIMYRLKD----NGRVGVILPEGFMFSTD--GAKRNIKQKLFN 345

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEG-- 438
           +  +  I+ LPT +F   T +AT +         ++    +  + +    ++  R     
Sbjct: 346 DFNVHTIIRLPTTIFSPYTTVATNIIFFEKTHKTQKTWFYRLDMPDGYKHFSKTRPMKLE 405

Query: 439 ---------KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
                      R  I D+        Y   E  K    LD   F     ++L P  +   
Sbjct: 406 HFDPVREWWNNRHEIQDEDGNYKSKAYSLEEISKNDYDLDLCGFPTETEEILPPDELMVK 465

Query: 490 LDKTG 494
                
Sbjct: 466 YKSER 470


>gi|227891952|ref|ZP_04009757.1| restriction-modification protein [Lactobacillus salivarius ATCC
           11741]
 gi|227866286|gb|EEJ73707.1| restriction-modification protein [Lactobacillus salivarius ATCC
           11741]
          Length = 767

 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/446 (15%), Positives = 151/446 (33%), Gaps = 76/446 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +    E     +++++L         +++    G +  N    ++         
Sbjct: 186 LLFLKLVSDLNEERNYNIKDEFL--------WDTYKTYEGNALINYINNTVI----DGLN 233

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
              +S     S+    +F        I        L +I      +      +   +  +
Sbjct: 234 KKFDS-----SEEDNGLFTPLHIKDPIK-------LKEIVDKLDTLNF--KKIDTDIKGD 279

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E+ I+++  + +    ++ TPR +V     ++           P     +YDP CGTG
Sbjct: 280 AFEYFIQKYN-QTNNDLGEYFTPRHIVRFLNDIV----------KPTYGDKIYDPFCGTG 328

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELE-------PETHAVCVAGMLIRRLESDPRR 270
           G L  A   + +                  +        +T  +    M++         
Sbjct: 329 GMLIVAFERILNELEERGKLDEDTLTNLREQTIWGGEISDTARIAKMNMILSG------- 381

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           D   NI Q  +         +++  +SN PF  +   ++ ++ +              P 
Sbjct: 382 DGHSNIMQHDSFMNP--VSDKYNIVISNIPFNMEVTNEQSSLYE--------------PD 425

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           I  G+ + ++H+   L+       RAAI++  + L          ++R+ ++ +  +  I
Sbjct: 426 IKKGNAVAILHILKALKNNNPY-SRAAIIVPDAVLN----DKSMKDLRKNIVSSGQLLGI 480

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           V+LP+ +F   T   T + I    KT      + +    +   ++    +K   IND   
Sbjct: 481 VSLPSKVFLPYTEAKTSILIFG-SKTNIPTENIFVYKVKNDGYTLTTRRRKISGIND--L 537

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGY 475
              + I+       +++ L+Y    Y
Sbjct: 538 DNFISIHEEMLETNYNKKLNYDNLFY 563


>gi|299065124|emb|CBJ36288.1| putative typeI restriction enzyme (hsdM) [Ralstonia solanacearum
           CMR15]
          Length = 481

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/339 (19%), Positives = 113/339 (33%), Gaps = 57/339 (16%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
               +      A    ED  F      +    LL ++ +    I L        V   +Y
Sbjct: 98  FLQALGDNDPAAGRHLEDIRF-----TITTPALLARVVQLLDAIPL----HRRDVRGAVY 148

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+ R    ++  +  F TPR +V     L            P    TL DP  GT G 
Sbjct: 149 ESLLGRIA--LTGRSGAFHTPRHIVRFMVEL----------TRPDPSDTLCDPAAGTCGI 196

Query: 220 LTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           L  A  ++                      HG E++     +    +L+  +E       
Sbjct: 197 LAAAGEYLRREHPGLLHDARQSAHFHHGMFHGHEIDRAMLRIGSMNLLLHGVEG------ 250

Query: 273 SKNIQQGSTLSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             +++ G  L+      +   Y   L++PPF    ++     +              L +
Sbjct: 251 -ADLRHGDALAG-AHADEAGAYSLILTHPPFTGDVDRGSADPDLLR-----------LVR 297

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                +LFL      L      GGRAA+++    LF   +G     +RR L+E+  +E +
Sbjct: 298 TRKTELLFLARCLRLLRP----GGRAAVIVPDGVLF--GSGIAHRTLRRMLVEDHQLEGV 351

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428
           + LP  +F     I T + + +   T    G V   +  
Sbjct: 352 IKLPCGVFRPYAGIGTAILLFTRTDTG-GTGHVWFYDLR 389


>gi|332292347|ref|YP_004430956.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170433|gb|AEE19688.1| N-6 DNA methylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 552

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/546 (15%), Positives = 170/546 (31%), Gaps = 124/546 (22%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWG-----DFKH-TDFGKVILPFTLLRRLECALEPTRSA 54
           M +      +L   +W      W           +     I     ++RL+     ++  
Sbjct: 1   MLQNNPKLKALIVSLW---NTFWSGGVSNPIDAISQ----ITYLLFIKRLDEL--ESKRE 51

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK-- 112
              ++      +     +      S Y     +     +   +   E+         K  
Sbjct: 52  RDAEWNGEEYESKFDGEYTPWIDESSYRPKPDTTEEEKAELFKKREEALAPRPKKELKWS 111

Query: 113 ----------------AIFEDFD------------FSSTIARLEKAGLLYKICKNFSGI- 143
                            +F                  + +  ++K  LL +  K    I 
Sbjct: 112 FFKSMPADDMLLHFRNNVFPHIKDLNDETSSFTKYMKNAVFIIQKPSLLVEAVKKVDEIF 171

Query: 144 -ELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
            E+  D          +  ++YE L++   +        F TPR ++ L   L       
Sbjct: 172 IEIEEDAKDGKQSFQDIQGDVYEMLLKEIATAGK--NGQFRTPRHLIKLLAEL------- 222

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------------CG 231
                P +   + DP CGT GFL  A N++                              
Sbjct: 223 ---TEPKLGHKIADPACGTSGFLLGAYNYILSDLVRKKEPELLQIDEDGFERATISSVLT 279

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
             +K       +G +++     + +  +++  ++       + +I+   TLSK+      
Sbjct: 280 EENKQILNDSFYGFDIDTTMVRLGLMNLMMHGID-------NPHIEYKDTLSKNYNESGN 332

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   L+NPPF  K     D  +     G                +LFL  ++  L     
Sbjct: 333 YDIVLANPPFTGKL----DKGDVNPDLGID---------TGSTELLFLARISKMLR---- 375

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWIL 410
            GG+AA+++    LF   A   +   R  LL ++ +EA+++LP   F   T + T + + 
Sbjct: 376 AGGKAAVIIPEGVLF--GASKAQKATREILLRDNQLEAVISLPAGAFKPYTGVKTAILVF 433

Query: 411 SNRKTEE---RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           +  + +       KV      +      +    RR + ++    +   Y++R++ +++  
Sbjct: 434 TKVEEDSKKWHTDKVWFYVLENDGY---SLDDNRRKLKENPLPLVKSNYIARKSAEYTDR 490

Query: 468 LDYRTF 473
                F
Sbjct: 491 -KNHFF 495


>gi|315506709|ref|YP_004085596.1| n-6 DNA methylase [Micromonospora sp. L5]
 gi|315413328|gb|ADU11445.1| N-6 DNA methylase [Micromonospora sp. L5]
          Length = 898

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/336 (21%), Positives = 129/336 (38%), Gaps = 59/336 (17%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++      I              +++HL+ +      +  + F TPR VV L   +L 
Sbjct: 96  LARVIALLDHIPEGDRDGER----ELFDHLLDQ-APRYGK--QHFGTPRPVVTLMVEML- 147

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                    +P    ++ DP CG GG L  A ++V          P    +G E      
Sbjct: 148 ---------APSPEDSVADPWCGPGGLLAAASDYVRR---TAGENPRQKFYGAERNQALM 195

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            +    +L+  +           + Q   L        RF   ++NPPFG          
Sbjct: 196 RLAGMNLLLHGV-------GEAELTQRDPLEAPG----RFSVVMTNPPFGG--------- 235

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++ ++   G    GL + +   +L L+  A++L    + GG+AA+++  S LF   + S
Sbjct: 236 RRDIESVPAG--LAGLVRTTKTELL-LLVAASRL---LDAGGKAAVIVPQSVLF--GSSS 287

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLW 431
              E+RR L+E   ++A+V LP   F     ++  L + +  K + R G V   +A    
Sbjct: 288 AHIEVRRLLVEEHRLDAVVILPPGTFLPYAGLSAALLLFT--KADSRTGDVWFYDAAGDG 345

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
                    R  ++DD    +L ++  R  G+ +  
Sbjct: 346 R--------RDPLSDDHVADVLKLWERRAGGERTER 373


>gi|111222732|ref|YP_713526.1| Type I restriction enzyme, M protein [Frankia alni ACN14a]
 gi|111150264|emb|CAJ61961.1| Type I restriction enzyme, M protein [Frankia alni ACN14a]
          Length = 506

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 135/428 (31%), Gaps = 69/428 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-----SEYSLS 89
           I     +RRL+        +         G  I+   +        ++      S   + 
Sbjct: 32  ITYLMFIRRLDAI-----QSTMMNKAKRTGRPIERPVYSDATDELRWSRFRALGSPDEMF 86

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            +        L   +       +       F      +  A LL K+      + L    
Sbjct: 87  AVVRDRVFPWLRE-LGGEGSTYQEHMRGARF-----TIPTANLLAKVVDMLDALPLDEH- 139

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +  +        F TPR ++ L   +           +P     +
Sbjct: 140 ---DTKGDLYEYMLSKIATAG--QNGQFRTPRHIIQLMVEM----------TAPTPGDRI 184

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIR 262
            DP CGT GFL ++  ++              +     + HG + +     +    ML+ 
Sbjct: 185 CDPACGTAGFLVESAAYLGRTHPETLLDPGARRHFGHEMFHGFDFDNTMLRIGSMNMLLH 244

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            +E         +I+   +L++        +   L+NPPF    + +  A          
Sbjct: 245 DVE-------QPDIRYRDSLAQSAAGDAGEYSLVLANPPFAGSLDYETTA---------- 287

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R    + +         +            GGRAA+++    LF   +     E+RR L
Sbjct: 288 -RDLLAVVRTKKTE----LLFLALFLRLLGLGGRAAVIVPDGVLF--GSTRAHRELRRIL 340

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           +E+  +EA+V LP  +F     ++T +   +   +      V   + T       +   K
Sbjct: 341 VEDHKMEAVVKLPGGVFKPYAGVSTAILFFTRTDSG-GTDDVWFYDVTADGW---SLDDK 396

Query: 441 RRIINDDQ 448
           R  +  + 
Sbjct: 397 RAPLLPED 404


>gi|5712712|gb|AAD47620.1| truncated HsdM [Lactococcus lactis]
          Length = 206

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 83/232 (35%), Gaps = 36/232 (15%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------KRFHYCLSNPPFGKKWEKD 308
             +++  +E +        I    TL  D   G        + F   ++NPP+   W   
Sbjct: 1   MNLMMHNIEYNDI-----QIHHADTLESDWPDGVIEGKDTPRMFDAVMANPPYSAHW--- 52

Query: 309 KDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                      +  RF   G+   +     FL+H     +      GR AI+L    LF 
Sbjct: 53  -----NNKDREDDPRFREYGIAPKTKADYSFLLHCLYHTKES----GRVAIILPHGVLFR 103

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G A   E  IR+ L++   IEA++  P  LF  T I   + IL   +       +  ++A
Sbjct: 104 GAA---EGRIRKALIDKHQIEAVIGFPDKLFLNTGIPVCVLILKKNRANS---DILFVDA 157

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
           +  +  ++N     + +  +   +I +  + R+       L       R I 
Sbjct: 158 SQGFEKMKNL----KQLRPEDIDKITETVIHRKAVDKYSHLATLEESLRMIT 205


>gi|57790490|gb|AAW56185.1| Cj81-126 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 149

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 89/146 (60%), Gaps = 5/146 (3%)

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V + S LFN    SG   IR+ ++END +EAIVALPT++F+ T I T++WI++N+K E +
Sbjct: 2   VHNGSSLFNSD--SGMVAIRKHIIENDYLEAIVALPTNMFYNTGIPTFIWIITNKKPEHK 59

Query: 419 RGKVQLINATDL--WTSIRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           +GKVQLINAT+   ++ ++   G K+  +  +   +I  +++   + K  ++LD   FGY
Sbjct: 60  KGKVQLINATNEEYFSKMKKSLGSKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGY 119

Query: 476 RRIKVLRPLRMSFILDKTGLARLEAD 501
            +I + +P  +  + D    A+L+  
Sbjct: 120 TKIIIEKPKSIEALKDDEKFAKLKDK 145


>gi|77164668|ref|YP_343193.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
 gi|76882982|gb|ABA57663.1| N-6 DNA methylase [Nitrosococcus oceani ATCC 19707]
          Length = 238

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   ++NPPF             E +     RF  GLP  S G   F+ H+    E  
Sbjct: 1   MKFDNVVANPPFSLD-----KWGADEAEGDIYNRFWRGLPPKSKGDYAFISHMI---EAA 52

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A+V     LF G A   E  IRR L+E++L++A++ LP +LF  TNI   + I
Sbjct: 53  VAKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILI 109

Query: 410 LSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
               + +    E R +V  I+A++ +      GK +  + D    +I+ +Y    + 
Sbjct: 110 FDCSREKGGVNEARKEVFFIDASNEYQ----SGKNQNTLGDAHIHRIIQVYNEFRDS 162


>gi|260580903|ref|ZP_05848727.1| LOW QUALITY PROTEIN: type I restriction-modification system, M
           subunit [Haemophilus influenzae RdAW]
 gi|260092392|gb|EEW76331.1| LOW QUALITY PROTEIN: type I restriction-modification system, M
           subunit [Haemophilus influenzae RdAW]
          Length = 305

 Score =  140 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 88/241 (36%), Gaps = 33/241 (13%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP 147
                ++E+    F  + + I   F DF +T  RL     +K   L  + K  + ++   
Sbjct: 38  KQIFTDIENSATGF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGK 96

Query: 148 DTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +  + YE+LI  + +   +   +F TP+ V  L   + +    ++ K      
Sbjct: 97  FEDNHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK------ 150

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             +YDP  G+G  L  A     +              GQE+   T+ +    M +  +  
Sbjct: 151 --IYDPAAGSGSLLLQAKKQFDEHIIEEG------FFGQEINHTTYNLARMNMFLHNINY 202

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           D       +I  G+TL +  F   + F   +SNPP+  KW    D            RF 
Sbjct: 203 DKF-----DIALGNTLMEPQFGDNKPFDAIVSNPPYSVKWAGSDDPT-----LINDERFA 252

Query: 326 P 326
           P
Sbjct: 253 P 253


>gi|119356723|ref|YP_911367.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
 gi|119354072|gb|ABL64943.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
          Length = 834

 Score =  140 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 141/405 (34%), Gaps = 60/405 (14%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y      + + E    V  +     + Y  + L  +    +    +  +++   ++ E+ 
Sbjct: 37  YKFMDDMDAESEELGGVRTFFTKEFARYGWAKLMRSGLGGH--ETLNLYAEAISSMPENP 94

Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              +    + K   L     +  K+F  I    +      + + +E+L+   GS+    A
Sbjct: 95  GIPALFRSIFKNAYLPYRDPETLKSFLKIIDEFEYDHSERLGDAFEYLLSVLGSQG--DA 152

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231
             F TPR ++    A+L           P     + DP CGT GFL  A  H+       
Sbjct: 153 GQFRTPRHIIDFMVAVL----------DPKKEEKILDPACGTAGFLISAYKHILRANTDA 202

Query: 232 -------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                     K       +G ++ P+   + +  + +             +I +  TL+ 
Sbjct: 203 DGNSLLTPDDKGRLAQNINGYDISPDMVRLSLVNLYLHGF-------ADPHIDEYDTLTS 255

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                +     L+NPPF    +      +         RF     +     +LF+ ++A 
Sbjct: 256 LDKWNEHADVILANPPF-MSPKGGIKPHK---------RFSIQATRS---EVLFVDYMAE 302

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
            L+      GRA I++    +F          +R+ L++  L+ A+++LP  +F   + +
Sbjct: 303 HLKP----NGRAGIIVPEGIIFQSGT--AYKSLRKMLVDTGLV-AVISLPAGVFQPYSGV 355

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            T + IL     +            D +      G +RR+I  + 
Sbjct: 356 KTSIIILDKSIAKRSNTIAFFKVDNDGF----GLGAQRRVIVKND 396


>gi|254433647|ref|ZP_05047155.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
 gi|207089980|gb|EDZ67251.1| N-6 DNA Methylase superfamily [Nitrosococcus oceani AFC27]
          Length = 244

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 19/177 (10%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +F   ++NPPF             E +     RF  GLP  S G   F+ H+    E  
Sbjct: 7   MKFDNVVANPPFSLD-----KWGADEAEGDIYNRFWRGLPPKSKGDYAFISHMI---EAA 58

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GR A+V     LF G A   E  IRR L+E++L++A++ LP +LF  TNI   + I
Sbjct: 59  VAKKGRVAVVAPHGVLFRGAA---EGRIRRKLIEDNLLDAVIGLPGNLFPTTNIPVAILI 115

Query: 410 LSNRKTE----ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
               + +    E R +V  I+A++ +      GK +  + D    +I+ +Y    + 
Sbjct: 116 FDCSREKGGVNEARKEVFFIDASNEYQ----SGKNQNTLGDAHIHRIIQVYNEFRDS 168


>gi|312897853|ref|ZP_07757268.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359]
 gi|310621052|gb|EFQ04597.1| N-6 DNA Methylase [Megasphaera micronuciformis F0359]
          Length = 432

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 150/472 (31%), Gaps = 64/472 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            + I +  +            L+  +  +    EL             Y  ++  F  + 
Sbjct: 4   LRIIMQKLNIREQYE--IPEALMTALLDDIKRQELMEALKDV----YSYGGILAEFEEQS 57

Query: 171 S--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +  +      TP+ V+ +   +                  + D   G GG      N   
Sbjct: 58  ADRKNYMQDYTPQCVLDIVARIA-------------PGGNVRDVCAGIGGLSLTKYNTDK 104

Query: 229 DCGSHHKIPPILVPHGQELEPETH---AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
               H +           L        A  V   ++   + +  R  + +I Q   +   
Sbjct: 105 TIDLHLEEYSQNAIAFLLLNLLMAEAPATVVEKNVLTGEKLNAYRVENGSIAQ---VPVP 161

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLAN 344
                ++   +SNPP+   W+                RF G  L   S     F++   +
Sbjct: 162 PLEDWKYDTVISNPPYSMPWDP-----------VMDERFEGYKLAPKSKADYAFVLDGIH 210

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G A  +L    LF G+A   E +IRR L++ +L++A+V LP  LF  T+I 
Sbjct: 211 SL----EDNGTAVYILPHGVLFRGQA---EEDIRRELIDRNLLDAVVGLPGKLFANTDIP 263

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGK 463
             + +    +  +    +  I+A   +  ++N    +  +  +   ++++ Y +R E  K
Sbjct: 264 VCVLVFKKNRDRK---DILFIDAQKEFKKLKN----KNQMTVEHVTRVINTYATRSEQDK 316

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
           +SR +           +  P  +     +     LE      +++   +    ++   + 
Sbjct: 317 YSRCVSIEEIRDNDYNLNIPRYIDNFELEPIPDALEMAKALNQINEEAEQVGREVAVMLR 376

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
           Q +      E   K  I   E           F+ +   A   ++  A    
Sbjct: 377 QLVCTNPEDEKEFKAFIVEME----------KFLTSSTGAVTVQEEEAVIAK 418


>gi|154175026|ref|YP_001408735.1| Sec-independent protein translocase protein TatC [Campylobacter
           curvus 525.92]
 gi|153793168|gb|EAT99402.2| Sec-independent protein translocase protein TatC [Campylobacter
           curvus 525.92]
          Length = 489

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 130/356 (36%), Gaps = 49/356 (13%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           +       F      ++   LL ++    + +    +         IYE +++    + +
Sbjct: 105 RQAIVKKAFEDNNNYMKDGVLLRQVINVINELNF-ENFKERHAFGEIYETILK--SLQSA 161

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A +F TPR V      ++           P +   + D  CGTGGFLT A+  +    
Sbjct: 162 GNAGEFYTPRAVTDFMAKMI----------KPKIGERVADFACGTGGFLTSALKELDSQI 211

Query: 232 S--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DL 286
                +       +G E +     +    +L+  ++       +  I   + L K   D 
Sbjct: 212 QTADEREIYKDSVYGIEKKALPFLLSATNLLLHDID-------NPQIYHDNALEKDIRDY 264

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               +F   L NPP+G   + +  +            F   L + S+ + LF+  +  +L
Sbjct: 265 APEDKFDVILMNPPYGGSEKDNIKSN-----------FPIEL-RSSETADLFMNVIMARL 312

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405
           +      GRAA++L    LF     + +  I+  LL    +  IV LP  +F   T+I T
Sbjct: 313 KFK----GRAAVILPDGFLF--GTDNAKVAIKTKLLNEFNLHTIVRLPRSVFAPYTSITT 366

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            +   +   T E   K+      D+    +N   K + +  +    ++  + +RE 
Sbjct: 367 NILFFN---TSEPTNKIWFY-RLDMPEGQKNF-SKTKPMKLEHFTPVISWWNNREE 417


>gi|325957310|ref|YP_004292722.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus acidophilus 30SC]
 gi|325333875|gb|ADZ07783.1| type i site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus acidophilus 30SC]
          Length = 492

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/499 (16%), Positives = 164/499 (32%), Gaps = 61/499 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  +   E      ++ Y +     +    + +        TS+  L    +     
Sbjct: 36  LFLKVYDDR-EQIWEIDQDDYESIIPKGMHWREWAEDNKDGKALTSD-ELLDFVNNKLLP 93

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L++   +             F      ++   LL ++    + ++   D     +  +I
Sbjct: 94  TLKNITVTNETPISKAIVKDAFIDANNYMKNGVLLRQVVNVVNEVDFT-DPKDRHLFGDI 152

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE +++    + +  + +F TPR +       L           P + + + D  CGTGG
Sbjct: 153 YESILKEL--QSAGSSGEFYTPRALTDFIAETL----------KPKLGQRIADLACGTGG 200

Query: 219 FLTDAMNHVAD--CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           FL  A+N ++        +        G E + + + + V  +L+  ++       + +I
Sbjct: 201 FLVSALNILSKQVHSVEDRELYNKAVFGIEKKGQPYILAVTNLLLHDVD-------NPDI 253

Query: 277 QQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             G++L K   +     +F   + NPPFG                             S+
Sbjct: 254 VHGNSLEKRVTEYTDKDKFDLIMMNPPFGGSELPIIKQNFPTDLQ------------SSE 301

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + LFL  +  +++      G+  ++L    LF       +  I++ +L++  +  I+ L
Sbjct: 302 TADLFLALIMYRIKD----NGKVGVILPDGFLF--GNDGAKLNIKKRMLKDFNLHTIIRL 355

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT-------------DLWTSIRNEGK 439
           P  +F   T+IAT +         +     +L                 + +  +R    
Sbjct: 356 PGSIFSPYTSIATNILFFDKTGPTKETWFYRLDMPKGYKHFSKTRPMKLEHFDPVREWWN 415

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE 499
            R  I D+        Y   E  K +   D   F     +VL P  +     K       
Sbjct: 416 DRHEIQDEDGNYKSKAYTPEELAKNNYNFDLCGFPTETEEVLPPFELMDKYQKERKE--L 473

Query: 500 ADITWRKLSPLHQSFWLDI 518
                ++LS + Q    D 
Sbjct: 474 NAKIDKQLSIIKQLLEEDD 492


>gi|332880948|ref|ZP_08448618.1| type I restriction modification DNA specificity domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681122|gb|EGJ54049.1| type I restriction modification DNA specificity domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 977

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/401 (17%), Positives = 140/401 (34%), Gaps = 75/401 (18%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             + I   +            +     L+   A +L +I        L    V   V  +
Sbjct: 219 FTTRIDYINKTVYEKLNSLYNTDIFTPLQIRDASILKEIMDKLD--PLTLTDVDSDVKGD 276

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E+ + +  +       ++ TPR +V     L+          +P +  T+YDP CGTG
Sbjct: 277 AFEYFL-KASTATKNDLGEYFTPRHIVKTMVRLV----------NPQIGETIYDPFCGTG 325

Query: 218 GFLTDAMNHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GFL ++  ++ +      ++ K+      +G E+   T  +    M++         D  
Sbjct: 326 GFLIESFRYIYNNMARTEANIKMLREHTVYGNEIT-NTARITKMNMILAG-------DGH 377

Query: 274 KNIQQGSTLSK--DLFTGKR----------FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            NI    +L+   D     R          +   L+N P+ +K +  +            
Sbjct: 378 SNINMRDSLANPIDGKATYRDNDGSEYHYGYDIVLANMPYSQKTKHGELYDL-------- 429

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     ++G  + + H   K     +  GR A+V+    LF           R +L
Sbjct: 430 --------PSTNGDSICVQHCM-KAINSTSPNGRMALVVPEGFLFRKDLT----RTREYL 476

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LEN  +++I++LP  +F   T + T +   +    + ++ +         +  ++++G  
Sbjct: 477 LENCQLQSIISLPQGVFLPYTGVKTDIIYATKVNQKIKKSE---KKKEFWYFDVKSDG-- 531

Query: 441 RRIINDDQRRQI-----LDIYVSRE--NGKFSRMLDYRTFG 474
                D+ RR++     L  Y      +   S  +    F 
Sbjct: 532 --YTLDNHRRKLDTPSDLAKYEEFRKLDEDQSTEMTNVGFE 570


>gi|291004531|ref|ZP_06562504.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 682

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 142/444 (31%), Gaps = 85/444 (19%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           + A  + TP+ V  L   L           +      ++DP CGTGG L+ A+       
Sbjct: 156 DTAGAYATPQPVAELMANL-----------ASDYPECVFDPACGTGGLLSAAV------- 197

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +GQ+              +  +        +  +  G +L  D F   R
Sbjct: 198 ----GRGANRLYGQDAIDVQAT-------LTDVRLKVEAVANAAVAFGDSLRADAFPDTR 246

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L NPPFG +     D            R+  GLP  S+  + ++ H    LE    
Sbjct: 247 VDTVLCNPPFGVRDWGHDD-------LAYDPRWVYGLPPRSESELAWVQHCLAHLEP--- 296

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GG A +++                +R  L+    + A++ LP       +++ ++W+L+
Sbjct: 297 -GGLAVVLMPPGA----AERPSGRRVRAELIRQGALRAVIGLPPGAAPPLHLSLHIWVLT 351

Query: 412 NRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK------- 463
                   GK V  ++A+    S                ++I++++   +  +       
Sbjct: 352 CPDEALATGKSVLFVDASSGSVSD---------------QRIVELWRDFDEAEDRFEAVP 396

Query: 464 -FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI------TWRKLSPLHQSF 514
             ++ L           +   R + +   +     A L  ++         +L+ L  + 
Sbjct: 397 DVAQRLSIVDLLDATVDVTPARRVHIRTAISPNEQAELAEELRKRLGRACDELAQLASTP 456

Query: 515 WLDILKPMM---------QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            +D  +P            +  P  W  + V + ++       +   +            
Sbjct: 457 TIDSKQPSDTPMTTVWSVSEGEPMTWRTATVADLLRGGALALHRATPTHRTGSTRNADVA 516

Query: 566 RKDPRADPVTDVNGEWIPDTNLTE 589
             D     ++D+ GE  P  +L +
Sbjct: 517 SNDVAILTLSDLRGEPRPSGSLRD 540


>gi|206603920|gb|EDZ40400.1| Putative Type I Restriction modification system, M subunit
           [Leptospirillum sp. Group II '5-way CG']
          Length = 549

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 167/477 (35%), Gaps = 94/477 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              L+ L+        + RE  L  GG++ + +          Y  S++   +       
Sbjct: 34  LIFLKLLD-----EEESQRESRLRLGGNSGNTKLLFSGEAEK-YRWSKWRFKSGEDLRNF 87

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            R+ +  Y+AS + +   + +   F   +  +    +L ++     G +     +   V 
Sbjct: 88  VRDAVFPYMASLAKDEPEVAD--YFRDAVLEIVDPNVLKQVIDELDGFDFR--KMGPDVK 143

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +I+E+L+   G         F TPR +      ++           P +  TL+DP CG
Sbjct: 144 GDIFEYLLTHLGQSA--LNGQFRTPRQIRAFMVEMV----------DPDIGDTLFDPACG 191

Query: 216 TGGFLTDAMNHVADCGSHHKIP-------------------------------------- 237
           T GFL DA++++    S H                                         
Sbjct: 192 TAGFLIDALDYLLAKYSDHVEEYPIYGEEWLEKRGQTLVEAKKAISNLQTYKKGAGERIP 251

Query: 238 ----PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +G ++  +   + V  +++  +     +  +   + G  LS++    +++ 
Sbjct: 252 DWKILEASIYGTDVSRQMLRISVMNLVLHGIRHARLKRANALSEMG-GLSEEDLK-RQYK 309

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPF  +  KD    +                      +LFL  +   L      G
Sbjct: 310 VILSNPPFAGQLPKDSIRADLP-------------TNSKKSELLFLSMMMQHLAP----G 352

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILS 411
           GR A+V+    LF   +    +++R+ LL    + A+++LP  +F  +   + T + +  
Sbjct: 353 GRCAVVIPEGLLF--GSTKAHTDLRKKLLMEFDLMAVISLPAGVFKPYS-GVKTGVLVFR 409

Query: 412 N--RKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKF 464
                + +R  KV       D +   +  G  R    + +    +L+ + S ++ +F
Sbjct: 410 KPVSGSSKRIEKVWFYEITNDGYDPEKISGGGRIETPEKNDIPDLLNQWKSYKDSRF 466


>gi|257421715|ref|ZP_05598705.1| predicted protein [Enterococcus faecalis X98]
 gi|257163539|gb|EEU93499.1| predicted protein [Enterococcus faecalis X98]
          Length = 438

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 160/458 (34%), Gaps = 86/458 (18%)

Query: 134 YKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLAT 188
           YK+ +  S          +         ++     F +E S+        TP  ++ +A+
Sbjct: 22  YKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVAS 81

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L            G  R+  D   GTGG               +   P    + +E  
Sbjct: 82  GVL------------GATRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFS 119

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFT 288
                  +  + IR + +         +  G +LS+                    D   
Sbjct: 120 DRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVP 171

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +    + NPP+   W   K+ +E+E  +         L   S     FL+   ++L+ 
Sbjct: 172 ATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE 226

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I T L 
Sbjct: 227 ----NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPTVLL 279

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           +L   +  +    +  I+A+  +   +       ++ D+   +IL+++ SR+   KFS +
Sbjct: 280 VLKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQSRKTIDKFSSV 332

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH-QSFWLDILKPMMQQI 526
           +           +  P R     +   +  L   +   K +        +++ K M   +
Sbjct: 333 VTIEELKENDFNLNLP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNNIELAKMMNDLV 391

Query: 527 YPYGWAESFVKESI---------KSNEAKTLKVKASKS 555
                A+  +KE           K N+    ++K ++ 
Sbjct: 392 GTTPEADRQIKEFASFFSGHVGYKDNQKPKRRIKIAEP 429


>gi|94995074|ref|YP_603172.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
 gi|94548582|gb|ABF38628.1| Type I restriction-modification system methylation subunit
           [Streptococcus pyogenes MGAS10750]
          Length = 263

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 39/251 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY- 59
           M E T S   L   +W +A+ L G     D+   +L     + L   L        EK+ 
Sbjct: 1   MAEKTTS---LRQALWHSADQLRGQMDANDYKNYLLGLIFYKHLSDKLLLAVCDNLEKHF 57

Query: 60  -----------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGST--NTRNNLESYIA 105
                       A+    +  +    V G   Y      +   L     +    LES   
Sbjct: 58  NTFTEAQKIFEDAYQDEGLKDDLISVVTGDLGYFIEPTLTFEKLIQDVYHNTFQLESLAQ 117

Query: 106 SF------SDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPDRV 154
            F       ++ + +FED D  S   +L     ++   +  + K  + I+   + V    
Sbjct: 118 GFRDIEQSGEDFENLFEDIDLYSK--KLGSTPQKQNQTISNVMKTLNEIDF--EAVDGDT 173

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + YE+LI  F SE  + A +F TP+ V HL T ++    +           TLYDP  
Sbjct: 174 LGDAYEYLIGEFASESGKKAGEFYTPQAVSHLMTQIVFLGRED------QKGMTLYDPAM 227

Query: 215 GTGGFLTDAMN 225
           G    +    N
Sbjct: 228 GFRVIIVIEAN 238


>gi|312902303|ref|ZP_07761510.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
 gi|310634274|gb|EFQ17557.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
          Length = 435

 Score =  138 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 147/418 (35%), Gaps = 73/418 (17%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLATA 189
            L +I  + S  EL             ++     F +E S+        TP  ++ +A+ 
Sbjct: 20  KLIEILSSLSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVASG 79

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +L            G  R+  D   GTGG               +   P    + +E   
Sbjct: 80  VL------------GPTRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFSD 117

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFTG 289
                 +  + IR + +         +  G +LS+                    D    
Sbjct: 118 RALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVPA 169

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +    + NPP+   W   K+ +E+E  +         L   S     FL+   ++L+  
Sbjct: 170 TKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE- 223

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I T L +
Sbjct: 224 ---NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPTVLLV 277

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRML 468
           L   +  +    +  I+A+  +   +       ++ D+   +IL+++ SR+   KFS ++
Sbjct: 278 LKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQSRKAVDKFSSIV 330

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                      +  P R     +   +  L   +   K +    +     L  MM  +
Sbjct: 331 TIEELKENDFNLNIP-RYIDTFEPETVKPLSEIMAEMKQTEQEIAKNNIELAKMMNDL 387


>gi|57506133|ref|ZP_00372055.1| type I restriction-modification system M subunit [Campylobacter
           upsaliensis RM3195]
 gi|57015617|gb|EAL52409.1| type I restriction-modification system M subunit [Campylobacter
           upsaliensis RM3195]
          Length = 495

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/383 (19%), Positives = 145/383 (37%), Gaps = 56/383 (14%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           + L  T    N+           + +FED +       ++   LL ++        +  +
Sbjct: 85  NELFPTLKALNITESTPLNQSIVRQVFEDLN-----NYMKDGYLLREVINEIESSLVIHN 139

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
               + +  +YE  ++   S  +  A +F TPR +      +L          SP +  +
Sbjct: 140 RQDFKELCKVYESFLKTLQSAGN--AGEFYTPRAITEFMVEML----------SPKLGES 187

Query: 209 LYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           + D  CGTGGFL  A + +      +  +       +G E +     +C   +LI  +E 
Sbjct: 188 VADLACGTGGFLISAAHFLEKQVSLTSERKVFETSFYGVEKKSLPFLLCATNLLINGIE- 246

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGK-------RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                 + N++ G+      F          +F   L NPP+G             ++ G
Sbjct: 247 ------NPNLKHGNAFDFSKFEDFDDLTKYPQFDIILMNPPYGG------------NERG 288

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              +  P   K S+ + LF+  + ++L       GR+A+VL    LF   A + +  ++R
Sbjct: 289 NDIKNFPQEYKSSETADLFMALILHRLSYK----GRSAVVLPDGFLF--GADNAKINLKR 342

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            LL +  +  I+ LP  +F   T+I T L   +  K    +         D+   I++ G
Sbjct: 343 KLLSDFNLYLILRLPKSVFAPYTSIPTNLLFFNADKGGTEKTH---FYRLDMPEGIKSFG 399

Query: 439 KKRRIINDDQRRQILDIYVSREN 461
            K + ++ +     L  + S + 
Sbjct: 400 -KTKQMSLEHFEPFLQWWQSGKE 421


>gi|146321310|ref|YP_001201021.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 98HAH33]
 gi|145692116|gb|ABP92621.1| EcoE type I restriction modification enzyme M subunit
           [Streptococcus suis 98HAH33]
          Length = 359

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 122/344 (35%), Gaps = 50/344 (14%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +      ++           ++IYE +++   S  +    +F TPR        +L    
Sbjct: 1   MINVIDEVDF-NSPEDRHSFNDIYEKILKDIQSAGNS--GEFYTPRAATDFIAEML---- 53

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI--PPILVPHGQELEPETHA 253
                 +P +  T+ D  CGTGGFLT  +NH+       +          G E +   H 
Sbjct: 54  ------NPQLGETMADLACGTGGFLTSTLNHLGQQRKTSEDVQKYNQAVFGIEKKAFPHL 107

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKD 310
           + V  + +  ++          I  G+TL K   D    ++F   + NPPFG        
Sbjct: 108 LAVTNLFLHEID-------DPKIIHGNTLEKNVRDYTEDEKFDIIMMNPPFGGSE----- 155

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                        F   L + S+ + LF+  +  +L+      GR  ++L    LF    
Sbjct: 156 ------LETIKNNFPAEL-RSSETADLFMAVIMYRLKE----NGRVGVILPDGFLFGEGV 204

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
               + +++ L+E   +  I+ LP  +F   T I T +      K  E     +L +  +
Sbjct: 205 K---TRLKQKLVEEFNLHTIIRLPHSVFAPYTGIHTNILFFDKTKKTEETWFYRL-DMPE 260

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            + +       R     D    + + + +R+          ++F
Sbjct: 261 GYKNFSKTKPMRN----DHFNPVREWWKNRQEILEGNFYKSKSF 300


>gi|256810495|ref|YP_003127864.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793695|gb|ACV24364.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 1068

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 83/496 (16%), Positives = 169/496 (34%), Gaps = 62/496 (12%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY--IASFS 108
           +R  +         +             +F   S+     +    T    E Y      +
Sbjct: 186 SRDELIRVLEKVHDTVWQGGKLAPTT--AFDEVSKLIFCKIWDEKTTRKGEYYRFQIGSN 243

Query: 109 DNAKAIFEDFD-FSSTIARLE----------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           ++AK +F+          + +          +  ++Y + +    I L            
Sbjct: 244 ESAKDVFDRIKKIYEDAKKKDPYVFAEDIKLEPEIVYSVVEQLQEINL--KDTDLDTKGV 301

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E  +  F          + TPR++++      +   D        +   + DP CG+G
Sbjct: 302 AFERFMEDF---FKGKMGQYFTPREIINFMVEFAMLHFDE----DEYLNLKVLDPACGSG 354

Query: 218 GFLTDAMNHVA----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR--RLE 265
           GFL   ++ +           +   H         +G E+  +   VC   M++      
Sbjct: 355 GFLLHVLDFIRRWAEGNYDKFEAYQHWHEFAKNNIYGIEINEQISRVCKMNMILHDDGHT 414

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +    D  ++ ++   + KD F    F   L+NPPFG K +K +    + ++ G+ GR  
Sbjct: 415 NIISFDALEDFEKIEKIHKD-FKKGSFDLILTNPPFGAKIKKSERKYIENYELGK-GR-- 470

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                     +LF+      L+     GG   IVL    L N         +R ++L   
Sbjct: 471 ----TSQKTEILFIERCWEFLKE----GGILGIVLPDGILTNSTLQY----VRDFILNRF 518

Query: 386 LIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGK--VQLINATDLWTSIRNEGKKR 441
            + A+++LP   F  +   + + L  L  +K  E  G   + +  A  +         ++
Sbjct: 519 RVLAVISLPNFAFTHYGAGVKSSLVFLQKKKEGEDLGNYPIFMAIAEHIGYDATGRKDEK 578

Query: 442 RIINDDQRRQILDIYVSR-ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
             + D     IL+ Y    + GK  + L++  F   R ++   L   +  D+      + 
Sbjct: 579 NDLPD-----ILEAYKEFLKTGKLKKNLNFEGFIVYRNELEGRLDAYYYKDEFRELEKKL 633

Query: 501 DITWRKLSPLHQSFWL 516
             +  K++ L +   +
Sbjct: 634 KKSKFKITTLGKIAHV 649


>gi|299137475|ref|ZP_07030657.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8]
 gi|298600880|gb|EFI57036.1| N-6 DNA methylase [Acidobacterium sp. MP5ACTX8]
          Length = 526

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 139/407 (34%), Gaps = 86/407 (21%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE L+    +        F TPR ++ L + L+          +P +   + DP
Sbjct: 165 DIQGDVYEMLLNEISTAGK--NGQFRTPRHIIKLVSELV----------NPQLGHRICDP 212

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI---------------------------LVPHGQ 245
            CGT GFL DA  ++    +  K                                  +G 
Sbjct: 213 ACGTAGFLLDAYQYIITQLAKKKKKRQALTPDEDGFVRSSVSGMLTQDNKDILEQSLYGY 272

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           + +     + +  +++  ++       + N+    TLSK     + +   ++NPPF    
Sbjct: 273 DFDTTMVRLALMNLMMHGID-------NPNVDYQDTLSKKFTEEEEYDIVMANPPFTGSI 325

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             DK  + +  +              +   +LF   +   L+     GG A I++    L
Sbjct: 326 --DKGDINESLQL-----------NTTKTELLFTERIFTLLKT----GGTAGIIIPQGVL 368

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
           F   +G    E R+ L+E+  ++A+++LP+ +F     +AT + + +     +       
Sbjct: 369 F--GSGGAFVEARKKLVEDAELKAVISLPSGVFKPYAGVATAILVFTRGGKTKH------ 420

Query: 425 INATDLWTSIR---NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
              T  +   +   +   KR+ I++     ++  + +R             F    + V 
Sbjct: 421 ---TWFYRIDKDGLSLDDKRQRISESDLPDVVAQWKARNPLHPGDRKAKCFF----VPVQ 473

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                 + L        + D T  +         L  LK +  +I  
Sbjct: 474 EIRDKQYDLSFNRYHEADHDETEYE----EPKVILQKLKTLEDKIQQ 516


>gi|146319438|ref|YP_001199150.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
 gi|145690244|gb|ABP90750.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus suis 05ZYH33]
          Length = 237

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 95/257 (36%), Gaps = 36/257 (14%)

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSML 337
             L  D    + F   ++NPP+  KW       +      +  RF     L   S     
Sbjct: 8   DELGIDQ--PRSFDAVVANPPYSAKW-------DNRESKLKDPRFMEYGKLAPASKADFA 58

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F++H    L    N  G  AIVL    LF G A   E  IR+ ++E + ++A++ LP +L
Sbjct: 59  FILHSLYHL----NNTGTMAIVLPHGVLFRGAA---EGHIRKLIIEKNYLDAVIGLPANL 111

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F+ T I T + +    +  +    V  I+A+  +      GK +  ++DD   +I++ Y 
Sbjct: 112 FYGTGIPTTILVFKKNRQTK---DVFFIDASKEFEK----GKNQNHLSDDMVEKIVETYH 164

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           +R+                   +   +   + L+         +     L  + Q    D
Sbjct: 165 NRQ---------SVDKYAHLASIEEIVENDYNLNIPRYVDTFEEEEEIDLGQVTQQLEQD 215

Query: 518 --ILKPMMQQIYPYGWA 532
              ++ +  +I      
Sbjct: 216 RLEIRALEDKIRQQLKT 232


>gi|222055951|ref|YP_002538313.1| N-6 DNA methylase [Geobacter sp. FRC-32]
 gi|221565240|gb|ACM21212.1| N-6 DNA methylase [Geobacter sp. FRC-32]
          Length = 818

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/532 (17%), Positives = 157/532 (29%), Gaps = 98/532 (18%)

Query: 35  ILPFTLLRRLECA-LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           I     L+RLE   L+  +  +   Y              K       N   +       
Sbjct: 32  ITYLLFLKRLEDIDLKRQQRGLPSIYADNETCKWGYIRQEKTNPSHLINVV-FPWLRELD 90

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-- 151
            + +   +      S N +     F          K  +L         +          
Sbjct: 91  KHFKPESDEPSELASLNNRMADAYFQLDP-----SKGKVLSDAIDAVDQLFARAGEGSAA 145

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +M + +E+L+    +        F TPR ++     LL           P   + + D
Sbjct: 146 QDIMGDTFEYLLSEVATAGK--NGQFRTPRHLIRFMVELL----------DPEPSQRVID 193

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKI-------------------------PPILVPHGQE 246
           P  GTGGFL     ++    S  +                                 G +
Sbjct: 194 PAAGTGGFLFSTQQYLMRKYSAQENLVLEWDGTPHRTDGAAATSEQYAAIHHGANFVGLD 253

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG-------KRFHYCLSN 298
            +     +    +++  L          ++ QG +LSK D           + + + L+N
Sbjct: 254 NDRTMARIGWMNLILHDL-------TDPHLLQGDSLSKRDGKPELARLMESETYDFVLAN 306

Query: 299 PPF-----GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PPF         EKD     +  + G+       +   S+      +     +      G
Sbjct: 307 PPFTGTVDSNDLEKDSKIFPRAAERGKKK--EDAITNKSE------LLFLWLMLDLLQVG 358

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
           GR A+++    LF          +RR LL   ++E +++LP  +F   T + T + I   
Sbjct: 359 GRCAVIIPEGVLF--GNTDAHVRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIF-- 414

Query: 413 RKTEERRGKVQLINAT-------DLWTSIR---NEGKKRRIINDDQRRQILDIYVSRENG 462
           RK   R  K      T         +       +   KR      QR  + D        
Sbjct: 415 RKETRRDDKQTFTGTTAPRTEYVWFYEVEEDGYSLNAKRNE-QPGQRNDLWDALEKF--- 470

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
           K                +L+P   SF  ++  LA L    T  KL+P  ++F
Sbjct: 471 KAWLSHGREGAQRYEKTLLQP---SFHPERWRLALLRD--TADKLTPAGEAF 517


>gi|307827039|ref|ZP_07656760.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
 gi|307732328|gb|EFO03271.1| N-6 DNA methylase [Methylobacter tundripaludum SV96]
          Length = 172

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/199 (27%), Positives = 85/199 (42%), Gaps = 33/199 (16%)

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           PTCG+G  L  A +         + P  L   GQE++  T A+                 
Sbjct: 1   PTCGSGSLLLKASD---------EAPRGLTIFGQEMDNATSALARMN------SRVSTTT 45

Query: 272 LSKNIQQGSTLSKDLFTG-----KRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFG 325
           L   I +G+T++   +       K F + ++NPPF  K W    +  E E       RF 
Sbjct: 46  LPPKIWKGNTIADPQWKDGNGKLKTFDFAVANPPFSNKNWTSGINPQEDEFD-----RFV 100

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
            G+P   +G   FL+H+   L+      G+ A++L    LF   A   E+ IR  L++  
Sbjct: 101 WGIPPEKNGDYTFLLHILKSLKST----GKGAVILPHGVLFRSNA---EARIRENLIKQG 153

Query: 386 LIEAIVALPTDLFFRTNIA 404
            I+ I+ LP +LF+ T I 
Sbjct: 154 YIKGIIGLPANLFYGTGIP 172


>gi|148263099|ref|YP_001229805.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146396599|gb|ABQ25232.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 549

 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 91/535 (17%), Positives = 178/535 (33%), Gaps = 105/535 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG--STN 95
              L+ L+   E T   +R +  A     +  +   +      +  S++   +    +  
Sbjct: 34  LIYLKLLDE--EETSRELRVRLGAGNSRFLFPDQAER------FRWSKWRFKSGIELNDF 85

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            R  +  Y+AS   +   + E   F      + +  +L ++      IE     +   V 
Sbjct: 86  IRGEVFPYMASLVKDEPQVAE--YFRDARLEINEVDVLKQVVDELDSIEFR--KLGPDVK 141

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            +I+E+L+   G         F TP+ +     A++           P    T+ DP CG
Sbjct: 142 GDIFEYLLTHLGQSA--LNGQFRTPKQIRSFMVAMV----------DPEFGDTIDDPACG 189

Query: 216 TGGFLTDAMNHVADCGSH--------------------HKIPPIL--------------- 240
           T GFL DA+ ++    S                      +    +               
Sbjct: 190 TAGFLIDAVEYLLAKYSENPQEMPIYGEEWLERKGLTLDEAKKQMPNLQTYRKGPGEKIP 249

Query: 241 -------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +G ++  +   + +  +++  +     +  +   + G  L++D    +++ 
Sbjct: 250 DWGILEASIYGTDVSRQMMRISMMNLVLHGIGKARLKRANVLSEMG-GLTEDDL-NRKYK 307

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPPF     KD    +                      +LFL  +   L      G
Sbjct: 308 VSLSNPPFAGMLPKDSIRHDLP-------------TNSKKSELLFLGLMMESLAP----G 350

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
           GR A+V+    LF   +     E+R+ LL++  + A+V+LP  +F     + T + +   
Sbjct: 351 GRCAVVVPEGALF--GSTGAHVELRKKLLQDFEVLAVVSLPAGVFKPYAGVKTSVLVFRR 408

Query: 413 RKTEERRG-----KVQLIN-ATDLWTSIRNEGKKRRIIND-DQRRQILDIYVSRENGKFS 465
                 +G     KV       D +   +  G  R    + +    +L  +   + GKFS
Sbjct: 409 PANPPEQGKPATAKVWFYEIKNDGYDPDKITGGGRPETPEQNDIPTMLVAWEGYKAGKFS 468

Query: 466 RMLDYRTFGYRRIKVLRPLRMS---FILDKTGLARLEADITWRKLSPLHQSFWLD 517
           +       G     VL+P       +  D   +A  +A++   +  P       D
Sbjct: 469 QPP-----GVEAGTVLKPGSPDPKCWWADYERIADSDANLGASRYKPTVGEDLSD 518


>gi|239833255|ref|ZP_04681583.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239821318|gb|EEQ92887.1| Type I restriction enzyme EcoEI specificity protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 865

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 127/393 (32%), Gaps = 81/393 (20%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y      +++ E       +   +   Y  + L +       +  + ++S+    + ++ 
Sbjct: 37  YKFMDDMDLEAEELGGERRFFTKDYERYRWAKLVAPGVSG--QDMLNTYSEALTNMVQNE 94

Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                   + +   L     +  + F              + + +E+L+   GS+    A
Sbjct: 95  GLPKLFRDIFRNAYLPYRDPETLRAFLREINSFTYDHSEKLGDAFEYLLSVLGSQG--DA 152

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231
             F TPR ++     ++          +P     + DP CGT GFL  A  H+       
Sbjct: 153 GQFRTPRHIIDFMVEII----------NPQKNEVIMDPACGTAGFLISAYKHILKQNSTG 202

Query: 232 ------------------------------SHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                                            +        G ++ P+   + +  + +
Sbjct: 203 VVNSNGASTEGDAAEQALESPMRYPGDLLQPDDRARLARNIRGYDISPDMVRLSLVNLYL 262

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                         +++  TL+ +    +     L+NPPF    +               
Sbjct: 263 HGF-------ADPKVEEYDTLTSEDKWTETADVILANPPF-MSPKGGIKPHT-------- 306

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            RF     +     +LF+ ++A  L       GRAAIV+    +F     S    +R+ L
Sbjct: 307 -RFQVQSKRS---EVLFVDYIAEHLTP----NGRAAIVVPEGIIFQS--QSAYVALRKML 356

Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
           +EN  + A+++LP  +F  +   + T + IL  
Sbjct: 357 VENH-LAAVISLPAGVFNPYS-GVKTSILILDR 387


>gi|256962776|ref|ZP_05566947.1| N-6 DNA methylase [Enterococcus faecalis HIP11704]
 gi|256953272|gb|EEU69904.1| N-6 DNA methylase [Enterococcus faecalis HIP11704]
          Length = 438

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 148/419 (35%), Gaps = 76/419 (18%)

Query: 134 YKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLAT 188
           YK+ +  S          +         ++     F +E S+        TP  ++ +A+
Sbjct: 22  YKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVAS 81

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L            G  R+  D   GTGG               +   P    + +E  
Sbjct: 82  GVL------------GATRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFS 119

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFT 288
                  +  + IR + +         +  G +LS+                    D  +
Sbjct: 120 DRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVS 171

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +    + NPP+   W   K+ +E+E  +         L   S     FL+   ++L+ 
Sbjct: 172 ATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE 226

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   F  T+I T L 
Sbjct: 227 ----NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKAFMNTDIPTVLL 279

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           +L   +  +    +  I+A++ +   +       ++ D+   +IL+++ SR+   KFS +
Sbjct: 280 VLKKNRLNK---DILFIDASNEFKKEKAW----NVLEDEHVAKILEVFQSRKAVDKFSSV 332

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           +           +  P R     +   +  L   +   K +    +     L  MM  +
Sbjct: 333 VTIEELKENDFNLNIP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNNIELAKMMNDL 390


>gi|91206234|ref|YP_538589.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|157827849|ref|YP_001496913.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
 gi|91069778|gb|ABE05500.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|157803153|gb|ABV79876.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
          Length = 517

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 132/375 (35%), Gaps = 60/375 (16%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD---FSSTIAR-------- 126
             F   +      L S N   +  + I + SD+   I    +         +        
Sbjct: 174 ERFSEFANILFLKLLSENNEKSWWNSIKAQSDD--DIIGYINGHVIEQIKNKYGGDVFTP 231

Query: 127 --LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             L  +  L  I      + L    + D    N +E+ + +      +   ++ TP++++
Sbjct: 232 ISLSNSHTLRHIIDAIDPLILSSTNIKD----NAFEYFLEK-TRSTCDYLGEYFTPKNII 286

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-----SHHKIPPI 239
            L    +           P    T+YDP CG+GGFLT+A  ++ +          K    
Sbjct: 287 KLTINYV----------DPKFGETVYDPFCGSGGFLTEAFKYIKENNIINTDEDLKRLRH 336

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF------TGKRFH 293
              +G+E+   T  +    M++         D    IQQ ++L    +         +F 
Sbjct: 337 NTLYGREIT-TTARIAKMNMILHG-------DGHSGIQQINSLENSKYIRPTTNQTLKFD 388

Query: 294 YCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             ++N PF ++  +K     +   +N     +  G+   ++G    + H    L      
Sbjct: 389 IIVTNMPFSQEITKKTIKNGKTVTENHIAHLYYNGIA-KNNGDAACVFHCLQNLRE---- 443

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS 411
           GGR A+V+    LF        + +R++LL    ++ +++LP   F   T + T +   +
Sbjct: 444 GGRMALVVPERFLFRRDT----AAVRQFLLSKAKLQTVISLPQGTFLPYTGVKTSILYFT 499

Query: 412 NRKTEERRGKVQLIN 426
           +      +       
Sbjct: 500 DAHKPNYQRYYWFYE 514


>gi|270668424|ref|ZP_06222532.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270684879|ref|ZP_06222842.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270316193|gb|EFA28164.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270316685|gb|EFA28474.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 117

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 11/101 (10%)

Query: 575 TDVNGEW---IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           T   GE+      ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++
Sbjct: 23  TGKAGEYILYETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKI 74

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           GYEI+FN++FY+++P R L ++  ++  +E Q   L+ E+ 
Sbjct: 75  GYEISFNKYFYRHKPLRSLAEVAQDILALEKQADGLISEIL 115


>gi|217971595|ref|YP_002356346.1| N-6 DNA methylase [Shewanella baltica OS223]
 gi|217496730|gb|ACK44923.1| N-6 DNA methylase [Shewanella baltica OS223]
          Length = 818

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 78/578 (13%), Positives = 160/578 (27%), Gaps = 94/578 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNI-DLESFVKVAGYSFY-NTSEYSLSTLG 92
           I     L+RLE      +   R+    + G          +      +     +      
Sbjct: 32  ITYLLFLKRLEDI--DIKRQQRDLPSIYEGFETCKWSYIRQEKTNPGHLIDVVFPWLREL 89

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTV 150
             + +   E +    S N +     F          K  +L         +       + 
Sbjct: 90  DKHFKAASEEHSELASLNNRMADAYFQLDP-----NKGKVLSDAIDKIDELFARAGDGSA 144

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +M + +E+L+    +        F TPR ++     L+           P   + + 
Sbjct: 145 TQDIMGDTFEYLLSEMATAGK--NGQFRTPRHLIRFMVELM----------DPEPGQRVI 192

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKI-------------------------PPILVPHGQ 245
           DP  GTGGFL     ++    S  +                                 G 
Sbjct: 193 DPAAGTGGFLFSTQQYLMRKYSATENLVLEWDGTPHRTDGAAATPDQYSAIHSGANFVGL 252

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---------DLFTGKRFHYCL 296
           + +     +    +++  +          ++ QG +LSK         DL   + + + L
Sbjct: 253 DNDRTMARIGWMNLILHDI-------TDPHLLQGDSLSKREGKPKQLSDLLASEVYDFVL 305

Query: 297 SNPPFGKKWEKDK---DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           +NPPF    + D    D++      G+  +    +   S+      +     +      G
Sbjct: 306 ANPPFTGIIDSDDLEPDSILFPRVGGKGKKKDDSITNKSE------LLFLWLMLDLLRVG 359

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412
           GR A+++     F          +RR LL   ++E +++LP  +F   T + T + I   
Sbjct: 360 GRCAVIIPEGVFF--GNTDAHMRLRRELLTEHVVEGVISLPGGVFQPYTGVKTSILIFRK 417

Query: 413 RKTEE-----------RRGKVQLINATDLWTSIRNEGK----KRRIINDDQRRQILDIYV 457
               +               V      +   S+  +      K   + D   +  + +  
Sbjct: 418 ETRRDDKQAFTGSNSPCTEHVWFYEVEEDGFSMDAKRNDRPDKNNDLWDALGKFKVWLSH 477

Query: 458 SRE---NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            R+     K S +         R  +LR             + L     W          
Sbjct: 478 GRDGALRNKTSLLQPSYYTERWRHSMLRDTANKLTPAGEAFSGLSDTSMWDGKIWSIHEL 537

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552
           + ++             A     + +       + +K 
Sbjct: 538 FPELPADPKDAENLVRTAVGNTVQELVIQNFHPVALKL 575


>gi|270719677|ref|ZP_06223339.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
 gi|270315394|gb|EFA27667.1| type I restriction-modification system specificity subunit
           [Haemophilus influenzae HK1212]
          Length = 116

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 11/101 (10%)

Query: 575 TDVNGEW---IPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRV 631
           T   GE+      ++L + E++P  ++I DYF  EV  H+ +A+++         E  ++
Sbjct: 22  TGKAGEYILYETSSDLRDSESIPLKQNIHDYFKAEVQAHISEAWLN--------MESVKI 73

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           GYEI+FN++FY+++P R L ++  ++  +E Q   L+ E+ 
Sbjct: 74  GYEISFNKYFYRHKPLRSLAEVAQDILALEKQADGLISEIL 114


>gi|237807924|ref|YP_002892364.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
 gi|237500185|gb|ACQ92778.1| N-6 DNA methylase [Tolumonas auensis DSM 9187]
          Length = 513

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 140/432 (32%), Gaps = 85/432 (19%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +      +          V  +IYE+L+ +     +     F TPR ++ +   ++    
Sbjct: 123 VITAAVEMVDKLPLDKSDVKGDIYEYLLSKLS--SAGINGQFRTPRHIIDMMIEMI---- 176

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----------------------CGSH 233
                       T+ DP CGT GFL   M ++                           +
Sbjct: 177 ------DVQPTETVCDPACGTAGFLARTMEYLTRKYSSPESIYKDEDGNPVYSGDLLAPY 230

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTG 289
            +     +  G + +     V    M++  +        + +I    +L+K         
Sbjct: 231 SEHINKEMFWGLDFDSTMLRVSAMNMMLHGV-------SNAHITYQDSLNKSFVGKPQEE 283

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   L+NPPF  K   D+ +V          +             LF+  +   L+  
Sbjct: 284 NYFDKILANPPF--KGSLDETSVNPYVLKKVKTKKTEL---------LFVALILRMLK-- 330

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408
              GGR+A ++    LF   + S   ++R+ L+EN+ +EA+++LP+ +F     ++T + 
Sbjct: 331 --LGGRSATIVPDGVLF--GSSSAHKDLRKELIENNQLEAMISLPSGVFKPYAGVSTGIL 386

Query: 409 ILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRI----------------INDDQRRQ 451
           I +   +     +V L +  D  ++      KK                      +    
Sbjct: 387 IFTKGGS---TDRVFLYDMKDDGYSLDDKRIKKDHDGDIPDVIAKWKRYTALYEKNDVAT 443

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
           I   +  +    F+  +D        + + R      +  +      +  +   K     
Sbjct: 444 IEAEFSDKTKPAFTVSIDELKAQNYDLSLNR--YKEVVYQEESYENPKVILGKLKALENE 501

Query: 512 QSFWLDILKPMM 523
               L+ L+ M+
Sbjct: 502 ILADLNALEGML 513


>gi|312887842|ref|ZP_07747429.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
 gi|311299661|gb|EFQ76743.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
          Length = 295

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 120/350 (34%), Gaps = 73/350 (20%)

Query: 7   SAASLANFIWKNAEDLWGD-FKHTDFGK---VILPFTLLRRLECALEPTRSAVREKYLAF 62
           SA  +AN +W     L  D   +  +      IL    L RL            +K+   
Sbjct: 2   SADEIANKLWNLCNVLRDDGVTYHQYLNELTYIL---FL-RLSE---------IKKFENE 48

Query: 63  GGSNIDLESFVKVAGYS-FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS 121
                   S   +      ++T    L+T+ +            S +   K I     ++
Sbjct: 49  LPEGYRWSSLKAIKDNKELFDTYRELLATISTK-----------SENPTIKEI-----YT 92

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +    L K   L  +  +   I+   D      ++ IYE L+ +  SE   GA  + TPR
Sbjct: 93  NASTTLRKPVNLRTLITSIDLIDWF-DEQEQDKIATIYEELLEKNASEKKSGAGQYFTPR 151

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--------SH 233
            ++++   LL+          P +     DP  GT GF+  A  ++ +            
Sbjct: 152 PLINVMVDLLV----------PKLGERWNDPAAGTFGFMIAADYYLKEKHHHYFELGSKE 201

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K        G EL  + H + +    +  LE          I+ G TLS+   + K F 
Sbjct: 202 RKFQVDEAFSGCELVQDAHRLALMNAKLHGLE--------SRIEMGDTLSELGKSFKNFD 253

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             L+NPPFG K   ++   +          F       S+  + FL H+ 
Sbjct: 254 GVLANPPFGTKQGGERPTRDD---------FTY---PTSNKQLNFLQHIY 291


>gi|237750520|ref|ZP_04581000.1| type I restriction-modification system M subunit [Helicobacter
           bilis ATCC 43879]
 gi|229374050|gb|EEO24441.1| type I restriction-modification system M subunit [Helicobacter
           bilis ATCC 43879]
          Length = 496

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 182/515 (35%), Gaps = 84/515 (16%)

Query: 39  TLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYS-------FYNTSEY- 86
             L+ L    E   +A+ E    +Y +    ++  ES+              F N   + 
Sbjct: 31  LFLK-LYDYYEKEWTALNEMNGTEYHSIIPEHLRWESWAVGEKSPTGEPLLTFINNELFP 89

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           +L  L       N+           + +FED +       ++   LL ++          
Sbjct: 90  TLKAL-------NITESTPLNQSIVRKVFEDLN-----NYMKDGYLLREVINEIESSLKI 137

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +    + +  +YE  ++   S  +  A +F TPR V      +L          SP + 
Sbjct: 138 HNRQDFKELCKVYESFLKTLQSAGN--AGEFYTPRAVTEFMVEML----------SPKLG 185

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            ++ D  CGTGGFL  A + +    +    +       +G E +     +C   +LI  +
Sbjct: 186 ESVADLACGTGGFLISAAHFLEKQVNLTSERKVFETSFYGVEKKSLPFLLCATNLLINGI 245

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEH 316
           E       + N++ G+      F           +F   L NPP+G             +
Sbjct: 246 E-------NPNLKHGNAFDFSNFEDFDINLTKYPKFDIILMNPPYGG------------N 286

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           + G+  +  P   K S+   LF+  + ++L       G+AA+VL    LF   A + +  
Sbjct: 287 ERGDDIKNFPQEYKSSETVDLFMALILHRLSYK----GKAAVVLPDGFLF--GADNAKIN 340

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           ++R LL +  +  I+ LP  +F   T+I T L   +      +          D+   I+
Sbjct: 341 LKRKLLSDFNLYLILRLPKSVFAPYTSIPTNLLFFNADPQGTQHTH---FYRLDMPEGIK 397

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           + G K + ++ +     L      E+GK +   +   F  +          ++  D  G 
Sbjct: 398 SFG-KTKQMSLEHFEPFLQW---WESGKQTLQDESGNFKAKSYTKEELEARNYNFDLCGY 453

Query: 496 ----ARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                 + A +   +     +      L  +M+QI
Sbjct: 454 VSEEEEILAPLELMEQIKTERDKLNATLDSIMKQI 488


>gi|257793832|ref|ZP_05642811.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
 gi|257787804|gb|EEV26144.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
          Length = 298

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 33/238 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 130 AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 188

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 189 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 248

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  
Sbjct: 249 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSL 298


>gi|218675223|ref|ZP_03524892.1| putative type I restriction enzyme modification methylase subunit
           [Rhizobium etli GR56]
          Length = 364

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 135/414 (32%), Gaps = 78/414 (18%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +A ++   +W+    L        + + +   T L  L+   E  R              
Sbjct: 2   NANAIVQKLWRLCTVLRK--DGITYQQYVTELTYLLFLKMMAERNRET------GSLPKT 53

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDN----------- 110
           +     V   G          L TLG+T+TR   +  +        +             
Sbjct: 54  MRWADLVAENGLRKLEHYRKVLVTLGATSTRLGKDDVLVLPPGDGATPEDKKRYADARPL 113

Query: 111 ---AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
               + I     F +    + +   L  +      ++   +        ++YE L+++  
Sbjct: 114 PEMVQEI-----FDNASTFIREPQNLTTLVTAIDELDWFSE--ERDQFGDLYEGLLQKNA 166

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E   GA  + TPR ++ L   L+           P     + DP  GTGGFL  A  ++
Sbjct: 167 EETKRGAGQYFTPRVLIELLVRLM----------QPQPGEIIQDPAAGTGGFLIAADRYM 216

Query: 228 ADCG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                          +       HG E  P T  + +  + +  ++SD       ++  G
Sbjct: 217 RARTDNYFDLGEKEQEFQKRHAFHGMENVPGTLRLLLMNLYLHDIDSD-------HVDLG 269

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TLS       R +  L+NPPFG                            +S   + F+
Sbjct: 270 DTLSDKGKGLGRVNLILTNPPFGPAGGAPTRDDLSV------------TASVSSYQLPFV 317

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            H    L+     GGRAAIV+  + LF    G    E+RR ++    +  I+ L
Sbjct: 318 EHCIRALQP----GGRAAIVVPDNVLFEDARG---KELRRMMMNWCDLHTILRL 364


>gi|207859654|ref|YP_002246305.1| type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|206711457|emb|CAR35842.1| putative Type I restriction-modification system methyltransferase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
          Length = 421

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 119/332 (35%), Gaps = 59/332 (17%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N  SYI       K IF +          +    + +I +       + +T+    + ++
Sbjct: 66  NDNSYIKLNQKEFKLIFSNITLYDFSQSRDIKNYISRITEI---CNEYINTLSIHSILDL 122

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  LI     E     +   TP ++V     ++                + +DP CG+G 
Sbjct: 123 FTSLI----EENRPPTQKHYTPHEIVTFMGNIIQA----------QKGESFFDPACGSG- 167

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                   +++   +      +   G E + +   +    ML+  L          NI  
Sbjct: 168 ------EFISEIIKNQ-----VAISGSEYDVDRLKISKMKMLVNDL-------SPSNISP 209

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             +   +    K+ F   LSNPPF  K   D +                G P  S+    
Sbjct: 210 --SYFTEGHNLKKNFDIILSNPPFSLKIPFDMEMHFCM----------YGKPPTSNADFA 257

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL +    L+      GRAAI+L    LF       E EIR+ +++N+ I AI+ LP  +
Sbjct: 258 FLQYCIFMLKD----NGRAAIILPDGILFREGK---EYEIRKKIIKNNHISAIIYLPKGM 310

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           F  T IAT + +   +   ++   + +IN   
Sbjct: 311 FKTTAIATNIIVFKKK---QKTNDILMINVRK 339


>gi|282881941|ref|ZP_06290586.1| type I restriction-modification system methyltransferase subunit
           [Peptoniphilus lacrimalis 315-B]
 gi|281298216|gb|EFA90667.1| type I restriction-modification system methyltransferase subunit
           [Peptoniphilus lacrimalis 315-B]
          Length = 983

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 127/364 (34%), Gaps = 69/364 (18%)

Query: 70  ESFVKVAG--YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL 127
           E   + +G   +F N   +             + + I   +        D   +     L
Sbjct: 194 EQIKRESGINTNFENACSWDSIKNIP------ISTRIEYINKTVYEKLNDLYETDIFTPL 247

Query: 128 E--KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +     +L +I        L    V   V  + +E+ + +  +       ++ TPR +V 
Sbjct: 248 QIRDTSILKEIMDKLD--PLTLTDVDSDVKGDAFEYFL-KASTSTKNDLGEYFTPRHIVK 304

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----V 241
               L+          +P +  T+YDP CGTGGFL ++  H+ +  +       +     
Sbjct: 305 TMVRLV----------NPQIGETIYDPFCGTGGFLIESFRHIYNNMARTDANLKMLREKT 354

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-----LFTGKR----- 291
            +G E+   T  +    M++         D   NI+   +L+        +  ++     
Sbjct: 355 VYGNEIT-NTARITKMNMILAG-------DGHSNIKMKDSLANPIDGKSTYIDEKGEEHH 406

Query: 292 --FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             +   L+N P+ +K +                         ++G  + + H   K    
Sbjct: 407 NGYDIVLANMPYSQKTKYGNLYDL----------------PSNNGDSICVQHCI-KAVDS 449

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408
            +  GR A+V+    LF         + R +LLEN  ++++++LP  +F   T + T + 
Sbjct: 450 ASENGRIALVVPEGFLFRKDLT----KTREYLLENCQLQSVISLPQGVFLPYTGVKTDII 505

Query: 409 ILSN 412
             + 
Sbjct: 506 YATK 509


>gi|167752500|ref|ZP_02424627.1| hypothetical protein ALIPUT_00751 [Alistipes putredinis DSM 17216]
 gi|167659569|gb|EDS03699.1| hypothetical protein ALIPUT_00751 [Alistipes putredinis DSM 17216]
          Length = 190

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 16/198 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M     +       IWK A+ + G+   +++  V+L    L+ +    E     +  +  
Sbjct: 1   MATMNTADIGFEREIWKAADKMRGNIDASEYKSVVLGLIFLKYISDKFETKYRQLVAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKA 113
              G   + +     A   FY  +E     + +           +N    I   +   K 
Sbjct: 59  ---GEGFEEDKDEYTAENIFYVPTEARWERIAAEAHTPEIGQVIDNAMRAIEKENKRLKD 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         + +      L  +   F+ I +H       ++   YE+ + +F     + 
Sbjct: 116 ILPKNFARPELDK----RRLGDVVDLFTNIRMHEHGDSKDILGRAYEYCLSKFAEAEGKL 171

Query: 174 AEDFMTPRDVVHLATALL 191
           A +F TP  +V     LL
Sbjct: 172 AGEFYTPACIVKTLLMLL 189


>gi|313673365|ref|YP_004051476.1| restriction modification system DNA specificity domain
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940121|gb|ADR19313.1| restriction modification system DNA specificity domain
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 865

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/440 (17%), Positives = 153/440 (34%), Gaps = 79/440 (17%)

Query: 65  SNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTRNN--LESYIASF-----SDNAKAIF 115
            ++D ES        F+     +YS S++ +     +  L  Y  +      + N   +F
Sbjct: 41  DDMDRESVEMGGKRGFFIGEYEKYSWSSIFNPYLGGHEMLNLYAEAITRMSQNPNLPELF 100

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            +  F +          L    K  +             + + +E+L+   GS+    A 
Sbjct: 101 RNI-FKNAYLPYRDPETLKLFLKTINEFTYDHSER----LGDAFEYLLLVLGSQG--DAG 153

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---- 231
            F TPR ++     L+           P     + DP CGT GFL  A  ++        
Sbjct: 154 QFRTPRHIIDFMVELV----------GPKKNDLILDPACGTAGFLISAYKYIVRENTSEK 203

Query: 232 --------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                            +   +    G ++ P+   + +  M +          +   I 
Sbjct: 204 YRSSNGNGIGDLLTPEERKKLLTNFKGYDISPDMVRISLVNMYLHGF-------VDPKIF 256

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +  TL+ +    +     L+NPPF            K HK     RF       +   +L
Sbjct: 257 EYDTLTSEDRWNEYADVILANPPFMT-----PKGGIKPHK-----RFSVQ---SNRSEVL 303

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+ ++A  L       GRAA+++    +F     +   ++R+ L+E   + A+V+LP  +
Sbjct: 304 FVDYIAEHLTP----NGRAAVIVPEGIIFQSA--NAYKQLRKMLVEK-YLYAVVSLPAGV 356

Query: 398 FFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR---QIL 453
           F   + + T + ++    +++    +  I   +      + G +RR I+ +      Q++
Sbjct: 357 FQPYSGVKTSILLMDKALSKK-TDSILFIKIENDG---FDLGAQRRPIDKNDLPDALQVI 412

Query: 454 DIYVSRENGKFSRMLDYRTF 473
             Y+ +     +   +    
Sbjct: 413 REYIDKVRNGKADEFNANEK 432


>gi|166363241|ref|YP_001655514.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166085614|dbj|BAG00322.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 292

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/309 (17%), Positives = 101/309 (32%), Gaps = 41/309 (13%)

Query: 7   SAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           +  ++   +WK A+ L    ++   ++   ++    LR         +  V       GG
Sbjct: 6   NIEAIEKKLWKAADTLRANSNYASNEYFLPVMGLIFLRHAYSRFLKVKREVEADLPKRGG 65

Query: 65  SN---IDLESFVKVAGYSFYNTSEYSLSTLGSTNTR--NNLESY---IASFSDNAKAIFE 116
                   +   K A Y     +++        +     +L      I         I  
Sbjct: 66  KTRSLTKEDFLCKGAIY-LQEKAQFDFLVALPDSVNRSTSLMEAMLSIEGDYPPLGGILP 124

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             ++           +L  + +  +  EL        +   IYE+ + +F +  +    +
Sbjct: 125 KTEYQEL-----DNVVLGNLLRILNPEEL--KKADGDIFGRIYEYFLTQFANLKAHDNGE 177

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP  +V L   +L                 ++DP CG+GG    + + V     +   
Sbjct: 178 FFTPVSLVSLIANVL-----------EPDHGLVFDPACGSGGMFVQSAHFVERQRIN--- 223

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYC 295
           P +L   G E  P T  +    + +  LE D        IQ+  T  +D      +  Y 
Sbjct: 224 PQMLTFKGLEKNPTTIRLAKMNLAVHGLEGD--------IQKAITYYEDPLALAGKVDYV 275

Query: 296 LSNPPFGKK 304
           ++NPPF   
Sbjct: 276 MANPPFNVD 284


>gi|315638030|ref|ZP_07893215.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
 gi|315481878|gb|EFU72497.1| type I restriction-modification system DNA-methyltransferase
           [Campylobacter upsaliensis JV21]
          Length = 496

 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 93/511 (18%), Positives = 177/511 (34%), Gaps = 80/511 (15%)

Query: 39  TLLRRLECALEPTRSAVRE----KYLAFGGSNIDLESFVKVAGYS-------FYNTSEY- 86
             L+ L    E   +A+ E    +Y +    ++  ES+              F N   + 
Sbjct: 31  LFLK-LYDYYEREWTALNEMNGTEYHSIIPEHLRWESWAIGQKSPTGEPLLTFINNELFP 89

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           +L  L       N+           + +FED +       ++   LL ++          
Sbjct: 90  TLKAL-------NITESTPLNQSIVRKVFEDLN-----NYMKDGYLLREVIDEIESSLKI 137

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +    + +  +YE  ++   S  +  A +F TPR V      +L          SP + 
Sbjct: 138 HNRQDFKELCKVYESFLKTLQSAGN--AGEFYTPRAVTEFMVEML----------SPKLG 185

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCG--SHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            ++ D  CGTGGFL  A + +      +  +       +G E +     +C   +LI  +
Sbjct: 186 ESVADLACGTGGFLISAAHFLEKQVSLTSERKVFETSFYGVEKKSLPFLLCATNLLINGI 245

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKDAVEKEH 316
           E       + N++ G+      F           +F   L NPP+G             +
Sbjct: 246 E-------NPNLKHGNAFEFSDFEDFDINLTKYPKFDIILMNPPYGG------------N 286

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           + G   +  P   K S+ + LF+  + ++L       GR+A+VL    LF   A + +  
Sbjct: 287 ERGNDIKHFPQEYKSSETADLFMALILHRLSYK----GRSAVVLPDGFLF--GADNAKIN 340

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           ++R LL +  +  I+ LP  +F   T+I T L   +      +          D+   I+
Sbjct: 341 LKRKLLSDFNLYLILRLPKSVFAPYTSIPTNLLFFNADPQGTQHTH---FYRLDMPEGIK 397

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           + G K + ++ +     L  +   +        +++   Y +         ++  D  G 
Sbjct: 398 SFG-KTKQMSLEHFTPFLAWWQGGKEVLQDESGNFKAKSYTK---EELESRNYNFDLCGY 453

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
              E +I              D L   +  I
Sbjct: 454 VSEEEEILEPLELMEQIKTERDKLNATLDSI 484


>gi|201067988|ref|ZP_03217840.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
 gi|200004432|gb|EDZ04944.1| putative DNA methylase [Campylobacter jejuni subsp. jejuni
           BH-01-0142]
          Length = 140

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 4   FTGSAASLANFIWKNAEDL-WGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAF 62
                  + NFIW  A+DL    +    +  VILP T++RR++  LEPT+  V + Y  +
Sbjct: 2   EQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRIDAVLEPTKDKVLKTYNTY 61

Query: 63  GGSNIDLESFV---KVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFED 117
                +LES +   +     F+N S+++L TL     N R N E+Y+  FS+N K I   
Sbjct: 62  KDEFENLESLLGGKQGNNLGFFNYSQFNLQTLLNDPKNIRINFENYLDCFSENIKDIILK 121

Query: 118 FDFSSTIARLEKAGLLYKI 136
           F F + +  LE++ +L  +
Sbjct: 122 FKFKNQLDTLEESNILLVL 140


>gi|239502429|ref|ZP_04661739.1| putative restriction-modification protein [Acinetobacter baumannii
           AB900]
          Length = 778

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 138/373 (36%), Gaps = 61/373 (16%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P    
Sbjct: 257 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 305

Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            +YDP CGTGGFLT+A +H+ D        S           G+E+      +    M++
Sbjct: 306 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 364

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D    I Q  TL   + +   +   ++N PF +K         K  K    
Sbjct: 365 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAK---- 411

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     +DG  + ++H     +     GGR A+V+    LF          +R++L
Sbjct: 412 ----------NDGDGVCVLHCFKATKK----GGRMALVVPEGFLFKAALAP----VRKYL 453

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            EN  ++A+V+LP ++F     + T +   +N         V   N T+   S+ +    
Sbjct: 454 FENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF--- 510

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVLRPLRMSFILDKTGLAR-- 497
           RR I+++  + +        +   S    Y    G+ ++         +I +    +   
Sbjct: 511 RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVNPELIRSNDYIYNYAHYSNSH 565

Query: 498 LEADITWRKLSPL 510
           +++     KL  L
Sbjct: 566 IKSKFPTIKLKEL 578


>gi|228475644|ref|ZP_04060362.1| N-6 DNA methylase [Staphylococcus hominis SK119]
 gi|228270426|gb|EEK11861.1| N-6 DNA methylase [Staphylococcus hominis SK119]
          Length = 238

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 88/139 (63%), Gaps = 9/139 (6%)

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             I+ +   LF+G  G GES IR++++END +E I+ L  DLF+ T I+TY+WI++  K+
Sbjct: 1   MTIIHNGFALFSGNPGGGESLIRQYVIENDWLEDIIQLSNDLFYNTEISTYIWIITKNKS 60

Query: 416 EERRGKVQLINATDLWTSI-RNEGKKRRIINDDQRRQILDIYVSRENGKF--------SR 466
            +R+GKVQLI+A++++ +  +N GKKR  I+   R  I+  Y   +N ++        S+
Sbjct: 61  PKRQGKVQLIDASNMYENRHKNIGKKRVDISKACREMIVQAYGEFDNKEYRFDDRTVESK 120

Query: 467 MLDYRTFGYRRIKVLRPLR 485
           +L+  +FG+ R+ + RP R
Sbjct: 121 ILNNESFGFTRVTIERPER 139



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 566 RKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKD 625
            ++   + V   NG    DT+L + E       I +YF REV P  PDA +D+       
Sbjct: 138 ERNENGNIVYKKNGNMSIDTSLRDTE------DINEYFQREVIPFSPDAKMDR------- 184

Query: 626 KEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMATE 674
            +  ++GYEI F R FY+Y P    + I   +K +E  I    + ++ +
Sbjct: 185 -KKDKIGYEIPFTRLFYKYTPPEPSETISERIKQLEESIVKNFQVLSGK 232


>gi|54024027|ref|YP_118269.1| putative restriction-modification system
           endonuclease/methyltransferase [Nocardia farcinica IFM
           10152]
 gi|54015535|dbj|BAD56905.1| putative restriction-modification system
           endonuclease/methyltransferase [Nocardia farcinica IFM
           10152]
          Length = 966

 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 119/327 (36%), Gaps = 57/327 (17%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           ++S + + +   F        +   GLL K+    +      D       +++YEHL+ +
Sbjct: 106 AYSRHVEDV--RF-------TIPTPGLLAKVVDVLNEALSTGDA----EAADLYEHLLAK 152

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             +        F TP  +  L  A+           +PG    + DPTCGTGG LT A  
Sbjct: 153 VATAG--RFGAFRTPLHLTALMVAM----------TAPGPDDEVCDPTCGTGGLLTAAAQ 200

Query: 226 HVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            +           K       HG + +     +    + +           + +++    
Sbjct: 201 FMLTSRSGTAQQSKAEVSGRLHGFDFDRTMLRLSSMRLALHG-------YGAADLRHRDN 253

Query: 282 LS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           LS +     +R+   L+NPPF    + +  A E                +     +L  +
Sbjct: 254 LSVEAGTEFERYSVVLANPPFAGSVDYETAAPELLAAV-----------RTKKSEILHPI 302

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            +   L+     GGRAA+++    LF   A   E  +RR L+E   +EA+V LP+  F  
Sbjct: 303 AILRLLKP----GGRAAVIVPDGLLFGSTAAHAE--LRRILVEEHGLEAVVKLPSGTFKP 356

Query: 401 -TNIATYLWILSNRKTEERRGKVQLIN 426
              ++T +   +  K   +   V   +
Sbjct: 357 YAGVSTAILFFT--KYAGQTDYVWFYD 381


>gi|169796762|ref|YP_001714555.1| putative restriction-modification protein [Acinetobacter baumannii
           AYE]
 gi|169149689|emb|CAM87580.1| conserved hypothetical protein; putative restriction-modification
           protein [Acinetobacter baumannii AYE]
          Length = 760

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 138/373 (36%), Gaps = 61/373 (16%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P    
Sbjct: 262 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 310

Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            +YDP CGTGGFLT+A +H+ D        S           G+E+      +    M++
Sbjct: 311 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 369

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D    I Q  TL   + +   +   ++N PF +K         K  K    
Sbjct: 370 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAK---- 416

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     +DG  + ++H     +     GGR A+V+    LF          +R++L
Sbjct: 417 ----------NDGDGVCVLHCFKATKK----GGRMALVVPEGFLFKAALAP----VRKYL 458

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            EN  ++A+V+LP ++F     + T +   +N         V   N T+   S+ +    
Sbjct: 459 FENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF--- 515

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVLRPLRMSFILDKTGLAR-- 497
           RR I+++  + +        +   S    Y    G+ ++         +I +    +   
Sbjct: 516 RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVNPELIRSNDYIYNYAHYSNSH 570

Query: 498 LEADITWRKLSPL 510
           +++     KL  L
Sbjct: 571 IKSKFPTIKLKEL 583


>gi|257794242|ref|ZP_05643221.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
 gi|257788214|gb|EEV26554.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
          Length = 237

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 85/238 (35%), Gaps = 33/238 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           LI RF +   + A +F TP+ V  +   ++ D  D         +R +YDPTCG+G  
Sbjct: 188 LIGRFAATAGKKAGEFYTPQQVSKILAKIVTDGKD--------KLRHVYDPTCGSGSL 237


>gi|301348334|ref|ZP_07229075.1| putative restriction-modification protein [Acinetobacter baumannii
           AB056]
          Length = 508

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 128/342 (37%), Gaps = 59/342 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P    
Sbjct: 210 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 258

Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            +YDP CGTGGFLT+A +H+ D        S           G+E+      +    M++
Sbjct: 259 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 317

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D    I Q  TL   + +   +   ++N PF +K         K  K    
Sbjct: 318 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAK---- 364

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     +DG  + ++H     +     GGR A+V+    LF          +R++L
Sbjct: 365 ----------NDGDGVCVLHCFKATKK----GGRMALVVPEGFLFKAALAP----VRKYL 406

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            EN  ++A+V+LP ++F     + T +   +N         V   N T+   S+ +    
Sbjct: 407 FENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF--- 463

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVL 481
           RR I+++  + +        +   S    Y    G+ ++   
Sbjct: 464 RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVNPE 500


>gi|168464564|ref|ZP_02698467.1| N-6 DNA Methylase family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632954|gb|EDX51408.1| N-6 DNA Methylase family protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 417

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 119/332 (35%), Gaps = 59/332 (17%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N  SYI       K IF +          +    + +I +       + +T+    + ++
Sbjct: 62  NDNSYIKLNQKEFKLIFSNITLYDFSQSRDIKNYISRITEV---CNEYINTLSIHSILDL 118

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  LI     E     +   TP ++V     ++                + +DP CG+G 
Sbjct: 119 FTSLI----EENRPPTQKHYTPHEIVTFMGNIIQA----------QKGESFFDPACGSG- 163

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                   +++   +      +   G E + +   +    ML+  L          NI  
Sbjct: 164 ------EFISEIIKNQ-----VAISGSEYDVDRLKISKMKMLVNDL-------SPSNISP 205

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             +   +    K+ F   LSNPPF  K   D +                G P  S+    
Sbjct: 206 --SYFTEGHNLKKNFDIILSNPPFSLKIPFDMEMHFCM----------YGKPPASNADFA 253

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL +    L+      GRAAI+L    LF       E EIR+ +++N+ I AI+ LP  +
Sbjct: 254 FLQYCIFMLKD----NGRAAIILPDGILFR---EGKEYEIRKKIIKNNHISAIIYLPKGM 306

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           F  T IAT + +   +   ++   + +IN   
Sbjct: 307 FKTTAIATNIIVFKKK---QKTNDILMINVRK 335


>gi|7467226|pir||T28670 hypothetical protein - Salmonella choleraesuis
 gi|1679865|emb|CAA68056.1| unnamed protein product [Salmonella enterica]
          Length = 417

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 118/332 (35%), Gaps = 59/332 (17%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N  SYI       K IF +          +    + +I +       + +T+    + ++
Sbjct: 62  NDNSYIKLNQKEFKLIFSNITLYDFSQSRDIKNYISRITEI---CNEYINTLSIHSILDL 118

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  LI     E     +   TP  +V     ++                + +DP CG+G 
Sbjct: 119 FTSLI----EENRPPTQKHYTPHGIVTFMGNIIQA----------QKGESFFDPACGSG- 163

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                   +++   +      +   G E + +   +    ML+  L          NI  
Sbjct: 164 ------EFISEIIKNQ-----VAISGSEYDVDRLKISKMKMLVNDL-------SPSNISP 205

Query: 279 GSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
             +   +    K+ F   LSNPPF  K   D +                G P  S+    
Sbjct: 206 --SYFTEGHNLKKNFDIILSNPPFSLKIPFDMEMHFCM----------YGKPPTSNADFA 253

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL +    L+      GRAAI+L    LF       E EIR+ +++N+ I AI+ LP  +
Sbjct: 254 FLQYCIFMLKD----NGRAAIILPDGILFR---EGKEYEIRKKIIKNNHISAIIYLPKGM 306

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           F  T IAT + +   +   ++   + +IN   
Sbjct: 307 FKTTAIATNIIVFKKK---QKTNDILMINVRK 335


>gi|213027397|ref|ZP_03341844.1| hypothetical protein Salmonelentericaenterica_35384 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 306

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 101/310 (32%), Gaps = 55/310 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTD-FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +   L   +WK  ++L         +   +     L+                      +
Sbjct: 2   NNNDLVAKLWKLCDNLRDGGVSYQNYANELASLLFLKMC------------------KET 43

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSS 122
             + +          Y    Y    L S   +  L+ Y   +    ++ K + +   F +
Sbjct: 44  GQEAD----------YLPEGYRWDDLKSRIDQEQLQFYRKMLVHLGEDKKKLVQAV-FHN 92

Query: 123 TIARLEKAGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               + +   + ++  N   ++ +            ++YE L+++  +E   GA  + TP
Sbjct: 93  VCTTITEPKQITELVSNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTP 152

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------- 233
           R ++     LL           P     + DP  GT GFL +A  +V    +        
Sbjct: 153 RPLIKTIIHLL----------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGD 202

Query: 234 -HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G EL P T  + +   L+  +E +     +  I+ G+TL  D     + 
Sbjct: 203 TQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGA--IRLGNTLGSDGENLPQA 260

Query: 293 HYCLSNPPFG 302
               +NPPFG
Sbjct: 261 DIVATNPPFG 270


>gi|78064669|ref|YP_367438.1| N-6 DNA methylase [Burkholderia sp. 383]
 gi|77965414|gb|ABB06794.1| N-6 DNA methylase [Burkholderia sp. 383]
          Length = 605

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 154/459 (33%), Gaps = 69/459 (15%)

Query: 42  RRLECALEP-TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
           +R +   +  TR    +       S          A  + Y+     +    + N  NNL
Sbjct: 168 KRNDWIFDEFTRFLFIKLNEDAKPSGS-----FTTAKLTSYSEQNKHMGDKAAQNFINNL 222

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
              + +             F+    R L KA  + ++     GI L        V+   +
Sbjct: 223 FDDLKAHHPEV--------FTDENERVLSKAATVERVIARLEGINL--KDTQGDVLGRAF 272

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E ++        +    F TPR++V     L  +  +    +         D   G+GGF
Sbjct: 273 EIMLSDTFK--GKDLGQFFTPREIVAFMLDLARENPEGPALDI-SKGERFLDGCAGSGGF 329

Query: 220 LTDAMNHVADCGSHH-----------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           L  A   V                  +          E+E +   +    M++  + +  
Sbjct: 330 LIAAYEDVYKHALSSTIRGDERENLLRRLGQETFFACEIEEKAARLGKLNMIVHAVNAQN 389

Query: 269 RRDLSKN-------------IQQGSTLSKDLFTGK----RFHYCLSNPPFGKKWEKDKDA 311
            + L +N             I+      +     +         L+NPPFGK  + +   
Sbjct: 390 AQWLHQNYLYNEERGGLKPLIEYEVDFGEGKKKRQIGSSSIDLILTNPPFGKSVKTENVL 449

Query: 312 VEKEHKNGELGRFGPGLPKIS------DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           ++ +  +        G P         D  +LF+ H    L+     GG+  IVL    L
Sbjct: 450 LDYQFGHEVKTFKSAGRPPEKRAKNSQDSEVLFIEHYLRTLKP----GGKLLIVLPDGVL 505

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQ 423
            N  A      +R ++ E+ +I+++++LP++ F  T   I T +  L  ++  + +G + 
Sbjct: 506 SNATA----KPVRDYIREHAIIKSVISLPSETFASTGTSIPTNVVFLQKKRPGDVQGDIF 561

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +  A   +   R  G     + ++    IL+ Y   + G
Sbjct: 562 M--ARADYVGRRANGD---PLKENDLPFILEKYREWQTG 595


>gi|258627227|ref|ZP_05722015.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio mimicus VM603]
 gi|258580529|gb|EEW05490.1| Type I restriction-modification system methyltransferase subunit
           [Vibrio mimicus VM603]
          Length = 241

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 82/250 (32%), Gaps = 27/250 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M +   +       +W  A  L G  + +++  V+L    L+ +    E  R  + +   
Sbjct: 2   MAKAPTNKKGFEETLWDTATQLRGSVESSEYKHVVLSLVFLKFISDKFEAKRQQLID--- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFED 117
             G                F+       S + +   ++++   I S     +      E 
Sbjct: 59  -GGMEAFVDMPEFYQQDNVFFLEEYARWSFVKARAKQDDIALIIDSALKAIEGKNKALEG 117

Query: 118 FDFSSTIARLE-KAGLLYKICKNFSGIELHP--------DTVPDRVMSNIYEHLIRRFGS 168
               +  + +  +   L  +      I+ +         D   + ++  +Y++ + RF +
Sbjct: 118 ALQDNYFSHMGLETQKLASLIDAIENIDTYVHEESANECDMSEEDLVGRVYKYFLGRFAA 177

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +   +F TP+ VV L   +L                 +YDP CG+GG    ++  V 
Sbjct: 178 TEGKDGGEFYTPKSVVTLLAEML-----------EPFQGKIYDPCCGSGGMFVQSLKFVE 226

Query: 229 DCGSHHKIPP 238
                 K  P
Sbjct: 227 SHQGRVKTSP 236


>gi|331002121|ref|ZP_08325640.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411215|gb|EGG90631.1| hypothetical protein HMPREF0491_00502 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 262

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 87/243 (35%), Gaps = 35/243 (14%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT-----------RSAV 55
           +   LA  IW++A  +    +  ++   IL F   + L    E             +  V
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDKEEQDLYNRGYDADNIKEYV 61

Query: 56  REKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
            E+      S     S  +  GY   Y     +   +G+  T +N+ + ++SFS N    
Sbjct: 62  NEEADDSYSS---RSSLQQDLGYFIAYKDLFSTWINMGADFTVDNVRTGLSSFSRNISPS 118

Query: 115 FEDFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            +   F+     LE            +   +  + +  + I          V+  IYE+L
Sbjct: 119 HKKL-FNGIFTTLEVGLSKLGADTKSQTKAVSDLIQLINVI-PMNSRHDYDVLGFIYEYL 176

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I RF S   + A +F TP +V  L + ++ +        +      +YDPT G    +  
Sbjct: 177 IERFASNAGKKAGEFYTPHEVSLLMSEIIAE------FLNRRDTIKIYDPTSGFRVIIMT 230

Query: 223 AMN 225
             N
Sbjct: 231 VAN 233


>gi|260579103|ref|ZP_05847001.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
 gi|258602788|gb|EEW16067.1| type I restriction-modification system, M subunit [Corynebacterium
           jeikeium ATCC 43734]
          Length = 207

 Score =  133 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 30/199 (15%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
             + L + +WK+A++L G    + +   +L    ++ +                     +
Sbjct: 6   KKSDLYSSLWKSADELRGGMDASQYKDYVLTLLFVKYVSD----------------KAKS 49

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGST-NTRNNLESYIASFSD--NAKAIFEDFDFSST 123
                     G SF       L  +    +    +   I   ++  + + +  + DF   
Sbjct: 50  DPYSLIEVPEGGSF-----DDLVAVKGAPDIGERMNIAIRRLAEENDLQGVINNADFDDP 104

Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFM 178
             +L +       L  +   F  I+        D ++ + YE+L+R F +E  +    F 
Sbjct: 105 -NKLGEGKAMQDRLTNLISIFQDIDFTGSRAEGDDLLGDAYEYLMRHFATESGKSKGQFY 163

Query: 179 TPRDVVHLATALLLDPDDA 197
           TP +V  +   +L  P DA
Sbjct: 164 TPAEVSRIMAQVLEIPKDA 182


>gi|281418675|ref|ZP_06249694.1| N-6 DNA methylase [Clostridium thermocellum JW20]
 gi|281407759|gb|EFB38018.1| N-6 DNA methylase [Clostridium thermocellum JW20]
          Length = 410

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/444 (17%), Positives = 144/444 (32%), Gaps = 93/444 (20%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M +         L + +W  A     D  K T++ +    F  L+  +      R   RE
Sbjct: 1   MAQNNNKVDFHRLGSELWDIANIFRDDTLKTTEYLEEFSYFLFLKLFD-----EREKQRE 55

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLESYIASFSDNAKA 113
           +     G+    +         F   +E  L     T+ + N    +  Y+ +       
Sbjct: 56  ELARLDGTKFVPDLPNH---LRFSTWAEKILASDGKTVKTDNGEFTIVDYVRNIFSELAE 112

Query: 114 IFEDFD---------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           + +            F + I R+  +  + ++ K    +EL        VM   YE +++
Sbjct: 113 VKDHDGRDLSLFRRLFKNHIWRIRYSPTIKELIKRLKDLEL---EQNFDVMGRAYEFVVQ 169

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           + G +  +    + TPR ++H    L            P +   +YDP  GTGGF+  A 
Sbjct: 170 KLGEQ--KQYGQYFTPRHIIHFMVEL----------ADPEIGEKIYDPAAGTGGFILRAF 217

Query: 225 NHVADCGSH--------------------------HKIPPILVPHGQELEPETHAVCVAG 258
             V     +                          ++       +  E  P+ + + +  
Sbjct: 218 EVVKSKIDNLVKAGMRVNESTAAYNGVQFDEAEMLYRKLKEESLYAVEKAPDVYKLALMN 277

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           M++         D   N+ +  +L         +++   L+NPP+G   +      E   
Sbjct: 278 MILHN-------DGKSNLFEADSLDNRAQLEHKEKYDVVLTNPPYGPLAQSRVGTFEFHA 330

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAIVLSSSPLFNGRAGSGE 374
           K  E                LF+ H+   L    P     RA +++    LF     S  
Sbjct: 331 KRYEA---------------LFIQHIMAALRPSEPAKKHSRAVVIILDKILF--DNSSVF 373

Query: 375 SEIRRWLLENDLIEAIVALPTDLF 398
             IR  LL    ++A+ ++P   F
Sbjct: 374 KNIRMKLLREFDLKAVFSMPGRHF 397


>gi|67920717|ref|ZP_00514236.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
 gi|67856834|gb|EAM52074.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
          Length = 333

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 122/338 (36%), Gaps = 60/338 (17%)

Query: 38  FTLLRRLEC------ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              L+  +         E    +   + L +     + E         F N      S L
Sbjct: 33  MLFLKIFDDREMEAELFEDDYISAMPEGLRWRDWAANDEGMTGETLLDFVN------SKL 86

Query: 92  GSTNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
             +    +L +     S   K  FED F+F      ++   L+ ++    + I+ +    
Sbjct: 87  FKSLKNLDLSTSNNPKSRILKEAFEDGFNF------MKNGTLIRQVINKINEIDFNNS-Q 139

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              +   IYE +++    + +  A ++ TPR V      ++           P +   + 
Sbjct: 140 DKHLFGEIYEKILKDL--QNAGNAGEYYTPRAVTQFMVNMI----------KPQLGERIL 187

Query: 211 DPTCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           DP CGTGGFLT A+NH+         +     +  G E +P  H +C+  +L+  ++   
Sbjct: 188 DPACGTGGFLTCALNHLRKQVKTVEEREKLSHLIMGVEKKPLPHLLCITNLLLHEID--- 244

Query: 269 RRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
               +  +++ +TL+          +    L+NPPFG K            ++G  G F 
Sbjct: 245 ----APKVRRDNTLANPLRNYQPSDKVEVILTNPPFGGKE-----------EDGIEGGFP 289

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                     + FL+ + + L      GGR  IVL   
Sbjct: 290 KAYQTKETADL-FLVLIIHLL----EVGGRGGIVLPDG 322


>gi|319938833|ref|ZP_08013197.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
 gi|319811883|gb|EFW08149.1| type I restriction-modification system [Streptococcus anginosus
           1_2_62CV]
          Length = 226

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 75/221 (33%), Gaps = 23/221 (10%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + + +       +W  A+ L G    +++ KVI+    L+ +  A E     +  +  
Sbjct: 1   MAKKSNANIGFEKELWNAADSLRGHISASEYRKVIVGLIFLKYVSDAFEEKYQQLLAE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
              G   + +         F+         + S    + + + +       +   ++   
Sbjct: 59  ---GDGFENDPDAYSEENIFFVPEIARWQFIASHAHSSEIGTVLDEAMREIED--DNPSL 113

Query: 121 SSTIARLE-----KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + + ++         +L ++   F+ I +   +    ++   YE+ I +F +   +   
Sbjct: 114 DNVLPQIYASPDLDKRVLGEVVDIFTNINMFEGSEEKDLLGRAYEYCIEQFAAHEGKRGG 173

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +F TP  +V     +L                 +YDP CG 
Sbjct: 174 EFYTPTSIVKTIVEIL-----------KPFRGRVYDPACGF 203


>gi|227892230|ref|ZP_04010035.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
 gi|227865952|gb|EEJ73373.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
          Length = 471

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/436 (17%), Positives = 158/436 (36%), Gaps = 61/436 (13%)

Query: 116 EDFDFSSTIARL----EKAGLLYKICKNFSGIELHPDTVP-DRVMSNI-----YEHLIRR 165
             F +   I  L    +K  +L  + K+  G  +          M  +     +E L+  
Sbjct: 82  RKFKYEDLIKSLYKIEKKNPVLKNMFKDIKGSNMAGRVADLIFAMMYLKKEPSFEELLDW 141

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                   +E  +TP  +  L   L+    + +         T+YDP  GT   L     
Sbjct: 142 IARSSGSRSEFSITPLSINKLMVKLVGSFKENI---------TVYDPAVGTANLL----- 187

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +       +GQ++      +     +++ + S         ++ G +L+ +
Sbjct: 188 ----LNVDSENFEKNKYYGQDINKFVLEIAKMNAILQDINSKNIE-----LKLGDSLNSN 238

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              G +    +++ P    W   KD  +              LP  +     F++   +K
Sbjct: 239 WNFG-KADVVVADMPLAMSWRPSKDLEQDNRYKNY-----GKLPNKN--EWPFILEGLDK 290

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       G    + +   LF       E ++RR LLE+ +I+A++ LP  L++ T++AT
Sbjct: 291 LSAD----GTMIALSAQGILFRAAK---EYKVRRKLLEDGMIKAVILLPEKLYYGTSVAT 343

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-F 464
            L +L   K   +   V  INA+  +  +++      ++ DD   +I+D++ +++  K F
Sbjct: 344 CLLVL---KKSSKDRDVFFINASKEYQKVKS----NNVLTDDNIGKIVDVFNNQKEIKNF 396

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS--FWLDILKPM 522
           SR + +         +   +   +I       +L     +  L+ +        + L  +
Sbjct: 397 SRKISFEEIQKNDFNL---IMARYINQYQFQEKLNQQKEFENLTKIDNKIGNVDEKLNKI 453

Query: 523 MQQIYPYGWAESFVKE 538
           M+++      +   K 
Sbjct: 454 MRELVTDDKLKEIEKL 469


>gi|325125904|gb|ADY85234.1| HsdM-type I modification subunit [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 479

 Score =  130 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 124/358 (34%), Gaps = 44/358 (12%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
            P+ +  L   +L                +++DP   +G  L              K   
Sbjct: 153 APKQMRKLIAEILNSEVKTE-------KVSIFDPVAMSGSLLLTLKE---------KFQS 196

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLS 297
            +  +G+E   +   +    M+I  ++     D   N  +G  L  + F    +F     
Sbjct: 197 KVELYGEEFSSDLFRLLKMNMVIHGIDIQTIHD---NFVRGDFLKDEEFDANSKFDIIPM 253

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            PPF           + E  N         LP  S     +++     L       G  A
Sbjct: 254 TPPFSS------WDADPELLNDPCFSEVGVLPPKSKADYAYVLRGLQHLSED----GTMA 303

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L +  LF       E EIR++LLE   I A+++LP        I T L I   +K+  
Sbjct: 304 VMLPTGALFRSAT---EGEIRKYLLEKQNIHAVISLPQGARNYMAIYTVLLIFKQKKS-- 358

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR 476
              K+  I+A+           K+  + ++   +IL IY +RE    +SR++        
Sbjct: 359 --DKILFIDASRDGVKNATR-LKQNFLTEEGFTKILHIYRNREEVDRYSRLVSLDEIREN 415

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              +  P      +D     +++ + T   LS   Q       K M++ +  +   E+
Sbjct: 416 DYNLNIPRY----IDTFSEKKIDVEATISSLSA-KQRVIEKSKKEMIELLNKFDTPEA 468


>gi|307268427|ref|ZP_07549805.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|306515234|gb|EFM83771.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 230

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 19/167 (11%)

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPP+  KW  D   ++         R+G  L   S     FL+H    L+      G  
Sbjct: 1   MNPPYSAKWSADASFLDDSR----FNRYG-KLAPKSKADFAFLLHGYYHLKDS----GTM 51

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + IL   +  
Sbjct: 52  AIVLPHGVLFRGAA---EGVIRKKLLEDGSIYAVIGMPANLFFGTSIPTTVIILKKNRDN 108

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
                V  I+A+  +T     GK +  +  +   +I+  Y+ R++ +
Sbjct: 109 R---DVLFIDASKEFTK----GKNQNKLAPEHIDKIVSTYIERQDVE 148


>gi|325122266|gb|ADY81789.1| type I restriction-modification system methyltransferase subunit
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 1313

 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 90/531 (16%), Positives = 180/531 (33%), Gaps = 75/531 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-----YSLSTLG 92
           F LL R +   +  +     ++       +   +          N ++      +L++  
Sbjct: 29  FLLL-RWQDVKDEEKQ-FIAEFEGSEYVPLFPTTLQMRNWADLINPADVIEKINTLASHI 86

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             N      +    +  +               +   A L+  + +    ++L P T P 
Sbjct: 87  ERNNAEKFNTAGFGYLKHLHNPLHHI-------QSIDASLMLPVIQWLCSLQLTPLTAPK 139

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +S+I+E ++            +F +   + HL   L+          +P    ++YDP
Sbjct: 140 I-LSDIFERIL---TETRDSNDGEFSSSESLSHLIAELI----------NPKSGESIYDP 185

Query: 213 TCGTGGFLTDAMN-HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
             GTG FL  A N               L   G ++        +  +++  +       
Sbjct: 186 CFGTGNFLISAWNLFQLRQIKQQNSGNTLQVSGNDINISAFLTGLTKIVLSGV------- 238

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            S  +  G++L  +      F   +++PP G K   +               F    P  
Sbjct: 239 PSTQLTLGNSLDDNSSKDAAFDIVVAHPPVGIKAHSNVHYYRH---------FQFKSP-- 287

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            D + LF+    ++L+      GRA IV+    LF G A     ++R+ LL N +++A+V
Sbjct: 288 -DITGLFVQQAISRLKT----NGRAVIVVPEGFLFRGGAD---RDLRKHLLTNGMVQAVV 339

Query: 392 ALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            LPT  +   +NI   L +L+          VQ+++A +L         K   +      
Sbjct: 340 GLPTGVIISGSNIRGCLLVLNKN---GNFHHVQMVDAKNLKGL--RAASKASSLFQLDAE 394

Query: 451 QILDI-----YVSREN-------GKFSRMLDYRTFGY--RRIKVLRPLRMSFILDKTGLA 496
           ++ ++     Y  RE+        + S  +D  T  Y   R+ V       + L      
Sbjct: 395 KLSNLILGQDYREREDSSSRSYLDETSIQVDEDTEDYVEWRVSVPELAETDWDLTPRRRE 454

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
           R E     +  +    + ++D L  +             +  +  +++AK 
Sbjct: 455 RNELLNALKPFTKASDTSYVDQLSTISSIFLGRTIKAVDLTSAPHNDQAKG 505


>gi|160885909|ref|ZP_02066912.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483]
 gi|156108722|gb|EDO10467.1| hypothetical protein BACOVA_03914 [Bacteroides ovatus ATCC 8483]
          Length = 221

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 100/231 (43%), Gaps = 24/231 (10%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELP 349
               ++NPPF  KW  D   ++ E       RF     L   S     F++ + +KL   
Sbjct: 1   METVIANPPFSAKWSADVSFMDDE-------RFSEVGKLAPKSKADYAFVLDIVHKL--- 50

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIVALPTDLFFRTNIATYLW 408
            +  G AAIVL    LF G A   E  IRR+L+E  + I+A++ LP ++F+ T+I T + 
Sbjct: 51  -DVTGIAAIVLPHGVLFRGAA---EGVIRRFLIEDKNCIDAVIGLPANIFYGTSIPTCIL 106

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRM 467
           ++  +K  +    +  I+A+  +  ++N    +  ++D+Q  +I+  +  R+   K+S  
Sbjct: 107 VI--KKCRKEDENILFIDASKDFEKLKN----KNSLSDEQIDKIVQTFQERKEIKKYSHC 160

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
              +        +  P  +    ++  +         ++L         +I
Sbjct: 161 ATLQEVMANDFNLNIPRYIDVFEEEEPIDIKAVMDEIKELEAKRAELDKEI 211


>gi|19881220|gb|AAM00833.1|AF486547_2 HsdM [Campylobacter jejuni]
          Length = 348

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 123/355 (34%), Gaps = 64/355 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIP-----------PILVPHGQELEPETHAVCVAG 258
           YDP+CG+ GFL ++  H+                           G+E  P ++A+ V  
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMN 257

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++  +        S NI + +TLSK   D+   +++   L+NPPFG K ++        
Sbjct: 258 MILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILANPPFGGKEKEQIQENF-- 308

Query: 316 HKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                        P  S+   +LFL H+   L+      GR AI++    LF   
Sbjct: 309 -------------PIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLFQNS 346


>gi|283797241|ref|ZP_06346394.1| type I restriction-modification system DNA methylase [Clostridium
           sp. M62/1]
 gi|291075091|gb|EFE12455.1| type I restriction-modification system DNA methylase [Clostridium
           sp. M62/1]
          Length = 214

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 18/167 (10%)

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +E+        +I    TL        + F   +SNPP+  KWE D + V          
Sbjct: 59  IEAGNDGFDKFDIAHEDTLLNPQHWDDEPFEVIVSNPPYSIKWEGDDNPV-----LINDP 113

Query: 323 RFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           RF P   L   S   + F+MH    L       G AAIV     ++ G A   E +IR++
Sbjct: 114 RFSPAGVLAPKSKADLAFIMHSLAWLAT----NGTAAIVCFPGIMYRGGA---EKKIRQY 166

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           L++N+ I+ I+ LP++LFF T+IAT + +L   K +        I+A
Sbjct: 167 LIDNNFIDCIIQLPSNLFFGTSIATCIMVLKRNKADNNT---LFIDA 210



 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL 48
           L   IW  A++L G     DF   +L     R +   L
Sbjct: 12 ELHRAIWAIADELRGSVDGWDFKSYVLGMMFYRYISENL 50


>gi|168698328|ref|ZP_02730605.1| Type I site-specific deoxyribonuclease, methylase subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 207

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 25/215 (11%)

Query: 320 ELGRFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           E  RF   G+   S     FL+H  + L+      G  AI+L    LF G A   E  IR
Sbjct: 3   EDPRFKAHGVAPKSAADFAFLLHGLHDLKDD----GVMAIILPHGVLFRGGA---EERIR 55

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             LL +  I+ ++ LP +LF+ T I   + +L   K  E    V  INA + +      G
Sbjct: 56  TKLLTDGHIDTVIGLPPNLFYSTGIPVCVLVLKKCKKPE---DVLFINAAEHFAK----G 108

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           K++  +  +   +I+  Y  R                RR+ +       + L+ +     
Sbjct: 109 KRQNRLEPEHIARIIATYQDRPE--------KVERYARRVGMKEIEANEYNLNISRYVST 160

Query: 499 EADITWRKLSPLHQS--FWLDILKPMMQQIYPYGW 531
                  KL  +H       + L+   ++   +  
Sbjct: 161 AEQEGEVKLDEVHSELVAIENALRAATEKHNRFLK 195


>gi|32263452|gb|AAP78480.1| M.AhdI [Aeromonas hydrophila]
          Length = 532

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 116/324 (35%), Gaps = 52/324 (16%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +    +++++      V  G   + TP++V+     ++          SP +   + DP
Sbjct: 246 DIKGRAFQNVL---LPAVRSGMGQYFTPKEVIDFIICMM----------SPNVRELVVDP 292

Query: 213 TCGTGGFLTDAMNHVADCGSHHKI----PPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            CG+G FLT A+++V +                 HG E       + +  M +       
Sbjct: 293 FCGSGHFLTSALDYVRNSHGKADKLFHEFAFTRLHGIEKSDRMVRIAMTDMRLHG----- 347

Query: 269 RRDLSKNIQQGSTLSK-DLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             D   NI+    L   D +     + F   ++NPPFG     D        +     + 
Sbjct: 348 --DGHSNIRCTDALLPFDNYPDLYRETFDLVVTNPPFGVDLPADALHQFGPFELALDRKT 405

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              L       ++ L      L+     GGR AIV+    L N         +R WL+E+
Sbjct: 406 AISL------EIVALERCLQLLKP----GGRMAIVIPDGVLSNKNTQY----VRDWLVEH 451

Query: 385 DLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRG---KVQLINATDLWTSIRNEGK 439
            +I AIV+LP + F  F  NI T + +L   +  E      KV +   +++         
Sbjct: 452 AVIRAIVSLPIETFSPFGANIKTSVLVLRKLRPNEDISKLRKVFMSEISNVGYDASG--- 508

Query: 440 KRRIINDDQRRQILDIYVSRENGK 463
             R  +     ++L  +      +
Sbjct: 509 --RPCSSSDLDELLSEFRDFVAKE 530


>gi|197106985|ref|YP_002132362.1| type I restriction-modification system methyltransferase subunit
           [Phenylobacterium zucineum HLK1]
 gi|196480405|gb|ACG79933.1| type I restriction-modification system methyltransferase subunit
           [Phenylobacterium zucineum HLK1]
          Length = 825

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 120/343 (34%), Gaps = 62/343 (18%)

Query: 125 ARL-EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
            +L E+A  +  I +  +   L  +      +  +YE     F          + TPR +
Sbjct: 255 EKLAERARRIATILERLNVTVLTAEH---DYLGQLYETF---FRYTGGNTIGQYFTPRHI 308

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---- 239
             +   L     D +            DP CGTGGFL   M+ +    +  ++  +    
Sbjct: 309 ARMMADLCGVGKDDVI----------LDPACGTGGFLIACMDRILHQHTISRVQMVKVVA 358

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +G E EP T A+CVA M++R        D S  I Q   L+   F        L+NP
Sbjct: 359 KQLNGFESEPVTAALCVANMILRG-------DGSTGIHQADALTSPEFPAGLATVALTNP 411

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PF              HK  +              +  F+      L      GGR A++
Sbjct: 412 PF-------------PHKKTDTP------------AEAFVDRALEGL----QTGGRLAVI 442

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418
           L +S L     G      R  +L+++ +  +  LP +LF       T + +L   +  + 
Sbjct: 443 LPTSTLVKQDKGG----WRAQILKHNSLLGVCQLPDELFQPFAAATTSVVLLEKGRPHDP 498

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           + K   +        +R   +  R    ++    ++  +++  
Sbjct: 499 KRKTAFVRLHHDGFVLRKGARIERASEPNEIPAAVEALLNKTE 541


>gi|126440241|ref|YP_001060649.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 668]
 gi|126219734|gb|ABN83240.1| putative type I restriction-modification system, M subunit
           [Burkholderia pseudomallei 668]
          Length = 866

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 126/395 (31%), Gaps = 61/395 (15%)

Query: 36  LPF---TLLRRLECALEPTRSAVREKYLAFGGSNID--------LESFVKVAGYSFYNTS 84
           LPF     LR+L         A+R+          D        L          F    
Sbjct: 164 LPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPY 223

Query: 85  EYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
            Y+   L        + +++ I       +      D  +    L+ A     + +  + 
Sbjct: 224 SYTFHELAALPDAKADQVQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAA 283

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +     T         +E+ +R   +   +    + TPR +V L +A++          S
Sbjct: 284 VSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLS 339

Query: 203 PGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH-------KIPPILVPHGQEL 247
                 + DP CGTGGFL          A   +AD   +        +     V  G + 
Sbjct: 340 GAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDA 399

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGK 303
                      M++         D   NIQ  ++L++             + L+NPPFG 
Sbjct: 400 NEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGT 452

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                         + ++G+F     K   G +LFL     K+ L    GG    V+   
Sbjct: 453 SESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KMVLSARRGGEICTVIDEG 498

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            L    A      IR+WLL    + A+V LP + F
Sbjct: 499 VLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 529


>gi|254198485|ref|ZP_04904906.1| putative type I restriction-modification system M subunit
           [Burkholderia pseudomallei S13]
 gi|169655225|gb|EDS87918.1| putative type I restriction-modification system M subunit
           [Burkholderia pseudomallei S13]
          Length = 866

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 126/395 (31%), Gaps = 61/395 (15%)

Query: 36  LPF---TLLRRLECALEPTRSAVREKYLAFGGSNID--------LESFVKVAGYSFYNTS 84
           LPF     LR+L         A+R+          D        L          F    
Sbjct: 164 LPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPY 223

Query: 85  EYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
            Y+   L        + +++ I       +      D  +    L+ A     + +  + 
Sbjct: 224 SYTFHELAALPDAKADQVQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAA 283

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +     T         +E+ +R   +   +    + TPR +V L +A++          S
Sbjct: 284 VSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLS 339

Query: 203 PGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH-------KIPPILVPHGQEL 247
                 + DP CGTGGFL          A   +AD   +        +     V  G + 
Sbjct: 340 GAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDA 399

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGK 303
                      M++         D   NIQ  ++L++             + L+NPPFG 
Sbjct: 400 NEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGT 452

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                         + ++G+F     K   G +LFL     K+ L    GG    V+   
Sbjct: 453 SESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KMVLSARRGGEICTVIDEG 498

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            L    A      IR+WLL    + A+V LP + F
Sbjct: 499 VLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 529


>gi|53720725|ref|YP_109711.1| putative restriction modification system methylase [Burkholderia
           pseudomallei K96243]
 gi|167740436|ref|ZP_02413210.1| putative restriction modification system methylase [Burkholderia
           pseudomallei 14]
 gi|167817648|ref|ZP_02449328.1| putative restriction modification system methylase [Burkholderia
           pseudomallei 91]
 gi|52211139|emb|CAH37128.1| putative restriction modification system methylase [Burkholderia
           pseudomallei K96243]
          Length = 866

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 126/395 (31%), Gaps = 61/395 (15%)

Query: 36  LPF---TLLRRLECALEPTRSAVREKYLAFGGSNID--------LESFVKVAGYSFYNTS 84
           LPF     LR+L         A+R+          D        L          F    
Sbjct: 164 LPFRPSLPLRQLNALFSRCHDAIRKNEKDENHIFDDFSKLLFLKLLEEKADTEEGFNLPY 223

Query: 85  EYSLSTLG--STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
            Y+   L        + +++ I       +      D  +    L+ A     + +  + 
Sbjct: 224 SYTFHELAALPDAKADQVQNAIMDMIKKIRTDKSYGDVLANPIHLKVAKTFLYLVRQLAA 283

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +     T         +E+ +R   +   +    + TPR +V L +A++          S
Sbjct: 284 VSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVRLMSAIVGQEKIVNALLS 339

Query: 203 PGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH-------KIPPILVPHGQEL 247
                 + DP CGTGGFL          A   +AD   +        +     V  G + 
Sbjct: 340 GAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATHRELVRKIRQQVFFGSDA 399

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGK 303
                      M++         D   NIQ  ++L++             + L+NPPFG 
Sbjct: 400 NEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWNIQDSDCDFILTNPPFGT 452

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                         + ++G+F     K   G +LFL     K+ L    GG    V+   
Sbjct: 453 SESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KMVLSARRGGEICTVIDEG 498

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            L    A      IR+WLL    + A+V LP + F
Sbjct: 499 VLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 529


>gi|223933198|ref|ZP_03625189.1| N-6 DNA methylase [Streptococcus suis 89/1591]
 gi|223898128|gb|EEF64498.1| N-6 DNA methylase [Streptococcus suis 89/1591]
          Length = 419

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 130/410 (31%), Gaps = 52/410 (12%)

Query: 164 RRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           R F  E     +  +   TP  V  L   +                ++L D   GTG   
Sbjct: 50  RDFFQEEGADRKKLKQDYTPDGVAELLARV------------SRGGKSLADICAGTGSLT 97

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQ--ELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQ 277
              +N+        +         +         A+      +I             +IQ
Sbjct: 98  IQYLNY----HPDVEFVRCEEFSAKVIPFLLINLAIRKIDAEVIHGDSLTRECFNVYSIQ 153

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSM 336
            G     D  + ++    +SNPP+   W                 RF   GL   +    
Sbjct: 154 DGVISQIDSPSDRKVEVVISNPPYSMAWTPIS-----------DERFDLFGLAPKTKADF 202

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            FL+H  ++L      GG  +++L    LF       E  IR+ LLE+  I+ I+ L  +
Sbjct: 203 AFLLHGFHQL----EDGGSMSLILPHGVLFRAN---SEGAIRQQLLEHGAIDTIIGLAPN 255

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           LF  T I   + +L   ++++    V  ++A D +T     GK +  ++ +  ++I  + 
Sbjct: 256 LFLNTGIPVAILLLRKGRSQK---DVFFVDAKDEFTK----GKAQNSLDVEHIKKITSVV 308

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
             R   +    +            L   R         +  L   +  R+L  + +    
Sbjct: 309 SLRMTTERFSYIADWEKLVENGFNLNIPRYVDTFIPEEVQPLGVIL--RELIEIDRE-IA 365

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
           +  +   +        +   K++    E + ++    K  +   I     
Sbjct: 366 ETEREFARLFGQLVATD-PTKQAELEAEQELMREYVDKPRLSKLITEESE 414


>gi|206895207|ref|YP_002246423.1| N-6 DNA methylase [Coprothermobacter proteolyticus DSM 5265]
 gi|206737824|gb|ACI16902.1| N-6 DNA methylase [Coprothermobacter proteolyticus DSM 5265]
          Length = 209

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 67/180 (37%), Gaps = 15/180 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M   T    +L N++W+ A  + G      F   ILP   L+RL    E     V     
Sbjct: 1   MATNTLDLPTLENWLWEAACKIRGPVDAPKFKDYILPLIFLKRLSDVFE---DEVNHLAE 57

Query: 61  AFGGSNIDLESFVKVAGY-----SFYNT--SEYSLSTLGSTNTRNNLES---YIASFSDN 110
            FG +++  +   +   +      FY    + + +    +T     L      +A  +  
Sbjct: 58  EFGSTDVAWKLVEEAHQHGQPLVRFYLPPEARWDVIRQKTTGLGEYLTDVMRAVARENPK 117

Query: 111 AKAIFEDFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              + +  DF++T    R+     L ++ +  S   L    V   ++   YE+L+R+F  
Sbjct: 118 LHGVIDVVDFNATAAGQRIIDDPPLAELIQVLSKYRLGLKDVEPDILGRAYEYLLRKFAE 177


>gi|158521274|ref|YP_001529144.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158510100|gb|ABW67067.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 1362

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 161/462 (34%), Gaps = 66/462 (14%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           L       + A  E   AF G+  +      +   +++  S   LS + +      L   
Sbjct: 29  LYLRWADFQEAELEAMAAFEGTEYEPVLPASLHWRTWHQLSPEDLSNVLTRQLPVAL-DQ 87

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + +F  N  A       ++   +L      +L       +           R + +I   
Sbjct: 88  LKNFRHNPMATHLH-RLAAPTRKLGDLPPKILANTVSRLAEKPFETPADHRRALKDID-- 144

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
              RFG           TP  +      L           +P    ++YDP  GT   L 
Sbjct: 145 --GRFGEA---KDGYHTTPLYLTKFMVEL----------AAPSKGESIYDPCFGTADLLI 189

Query: 222 DAMNHVADCGSHHKIPP-ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             ++HV+    +       +   G E     + V +  +++              I+ G+
Sbjct: 190 TTIDHVSGQQENTGYNMESVNISGVEKNISAYIVGMTRLVLAG-------ASDPKIELGN 242

Query: 281 TLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPGLPKISDGSM 336
           +L +      +   F   L+ PP+G   +  K+ +E   K      R   G         
Sbjct: 243 SLERTAPANPQQDGFDVVLATPPWGAIHKILKEEIELNGKYYPVRTRGRAG--------- 293

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+ H    L       GRA I +  S LF    G  E  +R WL+EN  +EA+++LP +
Sbjct: 294 LFIQHALANLRPD----GRAIIAVPQSLLF----GDTEINLRAWLIENHTVEAVISLPPN 345

Query: 397 LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
           +F    +I + + +L    + +   +++++NA   +   R  GK+   I+D Q   ++ +
Sbjct: 346 VFGALISIPSGILVLRRGGSTK---QIRMVNAEPFFEQGR--GKQPTTISDSQIHSLVAM 400

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
             + E  ++             ++V     + F L      R
Sbjct: 401 IRNPEQSQYC----------WDVEVESLAELGFDLTPRRRDR 432


>gi|257466226|ref|ZP_05630537.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917383|ref|ZP_07913623.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691258|gb|EFS28093.1| type I restriction-modification system DNA methylase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 267

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 86/244 (35%), Gaps = 39/244 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE----CALEPTRSAVR 56
           M E T   A L   IW  A+++ G     DF + IL     R +        +       
Sbjct: 1   MNETTQ-RAELHRKIWAIADNVRGAVDGWDFKQYILGILFYRFISENMTDFFDSAEQEAG 59

Query: 57  E---KYLAFGGSNIDLESFVKV-AGYSFYNTSEYSLSTLGSTN-TRNNLESYIA------ 105
           +   +Y        +++          F+         +  T  T  NL + +A      
Sbjct: 60  DLEFRYAELSDKEAEMDFRPNTVEDKGFFILPSQLFENIVKTARTNENLNTDLANIFKAI 119

Query: 106 -----SFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPD 152
                 F+  D+ K +FED D  +T  RL     EK   L  I    + I          
Sbjct: 120 EGSAVGFASEDDIKGLFEDVD--TTSNRLGSTVAEKNKRLADILTGIASINFDDFKNNDI 177

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               + YE+LI  + S   +   +F TP+ V  L   L+++  + + K        +YDP
Sbjct: 178 DAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKLLARLVMEGKETINK--------VYDP 229

Query: 213 TCGT 216
           TCG 
Sbjct: 230 TCGF 233


>gi|326802729|ref|YP_004320547.1| hypothetical protein HMPREF9243_0135 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651519|gb|AEA01702.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 262

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 80/248 (32%), Gaps = 37/248 (14%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVRE----- 57
            +    ++   +W +A  L       ++    L     + L    LE T   + E     
Sbjct: 1   MSEQVTTIQQALWNSANVLRSKMDANEYKNYTLGIIFYKFLSDQLLEKTCDLMGEDFVDL 60

Query: 58  -----KYLAFGGSNIDLESFVKVAGYSF-YNTSE-YSLSTLGSTNTRNNLESYIASFSDN 110
                 Y        D E  +    Y++ Y     ++ +        NN    +   +  
Sbjct: 61  NQAQALYEETYYDEEDGEDLLNELRYTYSYTIHPDFTFTKFMEKINDNNFM--LEELAQG 118

Query: 111 AKAIFE-DFDFSSTIARLE------------KAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            + I     DF +    ++            +   +  + K  +G+    +     ++ +
Sbjct: 119 FRDIERSHPDFENLFEDVDLMSRRLGPTPQKRNQTITAVMKELAGLNFAKNA---DLLGD 175

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE L+ +F SE  + A +F TP+ V  L T + +   +           T YDPT G  
Sbjct: 176 AYEFLLGQFASESGKKAGEFYTPQPVSELMTRIAIQGKEDKL------GLTAYDPTMGFR 229

Query: 218 GFLTDAMN 225
             +    N
Sbjct: 230 VIIVIEAN 237


>gi|291566463|dbj|BAI88735.1| type I restriction enzyme, modification chain [Arthrospira
           platensis NIES-39]
          Length = 200

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              ++K A+ L G+ + +D+  V L    L+ +    E  +  + E+Y          +S
Sbjct: 18  EAELFKAADKLRGNMEPSDYKHVALGLIFLKHICDRFETRQRELAEEY-----PEGVEDS 72

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-------YIASFSDNAKAIFEDFDFSSTI 124
               A   F+       S   +   +  +          I   + + K +         +
Sbjct: 73  DEYTAENVFWVPQAARWSHPQANAKQPTIGKLIDEAMLAIEKENSSLKGVLPKEYARPAL 132

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
                A +L ++    S I L         V+  +YE+ + +F     +   +F TPR V
Sbjct: 133 ----NAVMLGELIDLISNIALGEAQDTARDVLGRVYEYFLGQFAGSEGKRGGEFYTPRSV 188

Query: 184 VHLATAL 190
           V +   +
Sbjct: 189 VRVMVEM 195


>gi|315446768|ref|YP_004079647.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
 gi|315265071|gb|ADU01813.1| type I restriction-modification system methyltransferase subunit
           [Mycobacterium sp. Spyr1]
          Length = 694

 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 119/350 (34%), Gaps = 51/350 (14%)

Query: 89  STLGSTNTRNNLESYIASFSDN-AKAIFED----FDFSSTIARLEK-----AGLLYKICK 138
             L       N    IA+ S +    +         +   ++ L+       G L  +  
Sbjct: 104 KKLSLEAVDANWR-LIAAASPSQTADVLRRTATDAQWDDILSTLDDVERETNGRLDTLP- 161

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             + +    D +    ++   + ++RR   E    A   +    +V+   + LL    + 
Sbjct: 162 -IAAVVSAVDGIEPDRLAIAADEVLRRGSGERGRAAGYGVGEHGIVNSRVSELLSNLASS 220

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            K        +YDP CG    L              K        G ++      +    
Sbjct: 221 TKG------LVYDPACGIAEALVRTRT---------KRAGGGRLVGHDINVRAIRIARMR 265

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             +  L+++         +    L +D     R    ++ PPFG  W + ++        
Sbjct: 266 SFLHELDAEF--------ECADVLLEDPAPDLRADTVVAEPPFGMDWSRSQNIA------ 311

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R+  G+P  ++  + +L H    L+      G A +V S++PL    A    + IR
Sbjct: 312 --DPRWAFGIPPANNSELAWLQHAIAHLKPE----GSAYVVTSTAPL---TARGSSAAIR 362

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
             LL +  IEA++ LP  +   T I   LW+L           V LI+A+
Sbjct: 363 AELLRSGWIEAVILLPPKMLPHTTIPVALWVLRQADHPSNTVDVLLIDAS 412


>gi|307067538|ref|YP_003876504.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|306409075|gb|ADM84502.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
          Length = 263

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 106/291 (36%), Gaps = 33/291 (11%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            HG + +     +    M++  +E       +  I    +LS+D     ++   L+NPPF
Sbjct: 2   FHGNDTDTTMLRLGAMNMMLHGVE-------NPQISYLDSLSQDNEEADKYTLVLANPPF 54

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
               + +  + +                K     +LFL      L+     GGRAA+++ 
Sbjct: 55  KGSLDYNSTSNDL-----------LATVKTKKTELLFLSLFLRTLKP----GGRAAVIVP 99

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
              LF   +      IR+ ++EN  ++A++++P+ +F     ++T + I +         
Sbjct: 100 DGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAILIFTKT-GNGGTD 156

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           KV   +   +     +   KR+ I+D+    I++ +   E     +  D   F    + V
Sbjct: 157 KVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQRTDQSFF----VPV 209

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                  + L       +E +    + + +      D+ K +   +     
Sbjct: 210 AEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLAELEK 260


>gi|302543740|ref|ZP_07296082.1| N-6 DNA methylase superfamily protein [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461358|gb|EFL24451.1| N-6 DNA methylase superfamily protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 393

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 116/314 (36%), Gaps = 43/314 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           + +  +R   ++ +     + TP D+  L     +          P     + DP CG+G
Sbjct: 28  LLDQCLRELSADQA-DGSHYFTPDDMARLMVGAAV----------PRDGHRVLDPVCGSG 76

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G L ++  +V +      + P +   G+E    T  V      +R + +           
Sbjct: 77  GLLVESHRYVRE---RVGLNPAMSLQGKEQHAHTWQVARMNFAVRGITAHVFP------- 126

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGE----LGRFGPGLPKIS 332
            G +L++     +R    L+N PF +  W  +    +   ++        R+    P   
Sbjct: 127 PGDSLAEP--EPERHDIVLANLPFNQRDWAPEDKEEQAAGRSAPPLPVDPRWPEEPPSRG 184

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
             +  ++ H+A+ L       GR   ++  S   + +  +     R      DL+E ++A
Sbjct: 185 SANSAWIQHIAHALAPA----GRGVFLMGDSVANSRQPVTRRLRERLL--REDLVECVIA 238

Query: 393 LPTDLFFRTNIATYLWILSNRKTE-------ERRGKVQLINATDLWTSIRNEGKKRRIIN 445
           LP  +F  +  +  LW+L+  K+        +RR +V  +NA   +  +     +R  + 
Sbjct: 239 LPLRVFGHSKASACLWVLNRDKSARPGWGVLDRRQQVLFVNARRAFEPVPKSRARR--LG 296

Query: 446 DDQRRQILDIYVSR 459
           D     IL    + 
Sbjct: 297 DKNTALILTTLAAW 310


>gi|225573225|ref|ZP_03781980.1| hypothetical protein RUMHYD_01416 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039357|gb|EEG49603.1| hypothetical protein RUMHYD_01416 [Blautia hydrogenotrophica DSM
           10507]
          Length = 769

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 103/320 (32%), Gaps = 61/320 (19%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +  +YE  IR      +       TPR +      L+                 
Sbjct: 271 QTDTDFLGLLYEAFIRYGYD--NNSLGIVFTPRHITKYCAELIDVSAKD----------K 318

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHAVCVAGMLIRRLE 265
           + D  CG+GGFL  A + +    +   IP        +G +  P   A+    M  R   
Sbjct: 319 VIDIACGSGGFLVAAFDRMLSSYTKMGIPFNVIRESLYGFDTNPTVWALAALNMFFRG-- 376

Query: 266 SDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                D   +I+  S   +        RF   L NPPF ++ E ++D +           
Sbjct: 377 -----DGKSHIENASCFEESSMNAVKDRFTKALLNPPFSQEEEPERDFIN---------- 421

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                                 +E     G  A +V S        A    +  R   L+
Sbjct: 422 --------------------TAMESLQALGVMAVVVKSGIF-----ADDDNALWRNDFLK 456

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              +  +++LP+DLF+ T I T + +   ++ +    KV +  A       +    KR  
Sbjct: 457 KHTLLGMISLPSDLFYPTAIDTTIMVAQAKRPQNLTDKVFM--AKIWNDGYKKLKGKRVE 514

Query: 444 INDDQRRQILDIYVSRENGK 463
            +  Q  ++L+ +     G+
Sbjct: 515 TSGSQLDEVLEEFRKFRAGE 534


>gi|329939285|ref|ZP_08288621.1| type I restriction modification system protein [Streptomyces
           griseoaurantiacus M045]
 gi|329301514|gb|EGG45408.1| type I restriction modification system protein [Streptomyces
           griseoaurantiacus M045]
          Length = 793

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/308 (21%), Positives = 113/308 (36%), Gaps = 43/308 (13%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + +  L+ +FGS  +  + +F TPR VV L     L  +D+         R +YDP    
Sbjct: 230 DEFRQLVDQFGSRAALPSGEFFTPRAVVRLMRDAALGDEDSA--------RRVYDPYARA 281

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-- 274
           G  L      +            L   G+  +  T  +    + +  +  +     +   
Sbjct: 282 GEMLDGVAERL-------GGVVPLTLRGESPQRGTLRLAGMNLALHGIPVELEAGTAAPW 334

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           N +           G R    L+NPPF       K       + G    +  G P     
Sbjct: 335 NERA-------WPKGHRADLILTNPPFNAHGAVPKP------REGID--WPYGPPPSGSP 379

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  +L H+   L+      GRA +V+  S   +      E EIR  L+E+  +E IVALP
Sbjct: 380 AFAWLQHVLVSLKDE----GRAGVVMPVSAGTSTDVR--EREIRSRLVEDGAVECIVALP 433

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             LF    ++  LW L +  +   R ++  ++A DL           R+++D+    +  
Sbjct: 434 PQLFSGAQVSVCLWFLRS--SAAVREEILFVDARDLGDKATRGP---RVLSDEHVGAVTR 488

Query: 455 IYVSRENG 462
              +   G
Sbjct: 489 TVQAWRRG 496


>gi|312899539|ref|ZP_07758868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
 gi|311293312|gb|EFQ71868.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
          Length = 310

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 115/310 (37%), Gaps = 49/310 (15%)

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------------- 284
           P    + +E         +  + IR + +         +  G +LS+             
Sbjct: 1   PDAQFYCEEFSDRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTE 52

Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                  D     +    + NPP+   W   K+ +E+E  +         L   S     
Sbjct: 53  FSSIEIVDEVPATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYA 107

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           FL+   ++L+      G  +I+L    LF G A   E +IR+ L+E +L++A++ LP   
Sbjct: 108 FLLQGIHQLKE----NGVMSIILPHGVLFRGAA---EEKIRKKLIEKNLLDAVIGLPAKA 160

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F  T+I T L +L   +  +    +  I+A+  +   +       ++ D+   +IL+++ 
Sbjct: 161 FMNTDIPTVLLVLKKNRLNK---DILFIDASKEFKKEKAW----NVLEDEHVAKILEVFQ 213

Query: 458 SREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
           +R+   KFS ++           +  P R     +   +  L   +   K +    +   
Sbjct: 214 ARKAVDKFSSVVTIEELKENDFNLNIP-RYVDTFEPEPVKPLSEIMAEMKQTEQEIAKNN 272

Query: 517 DILKPMMQQI 526
             L  MM  +
Sbjct: 273 IELAKMMNDL 282


>gi|282882715|ref|ZP_06291322.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis
           315-B]
 gi|281297376|gb|EFA89865.1| type I restriction enzyme, HsdM subunit [Peptoniphilus lacrimalis
           315-B]
          Length = 269

 Score =  124 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 88/243 (36%), Gaps = 38/243 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT---------- 51
              +   + L   IW  A+D+ G     DF + +L     R +   +             
Sbjct: 3   NNESIQRSELYRKIWAIADDVRGAVDGWDFKQYVLGILFYRFISENIREYFNHAEHEAGD 62

Query: 52  ------RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGST--NTRNNLE 101
                 + + +E    F    ++ + F  +    F N  +   +   L +   N    +E
Sbjct: 63  LEFDYGKISDQEANEDFRPGTVEDKGFFILPSQLFENIVKTARTNENLNTDLANIFKEIE 122

Query: 102 SYIASFS--DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD-R 153
           +    F+  D+ K +F+D D +S  +RL     EK   L  I +    I        D  
Sbjct: 123 ASAVGFASEDDIKGLFDDIDMTS--SRLGGSVSEKNKRLADIIEGIGQINFKDFRNNDID 180

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
              + Y +LI ++ +   +   +F TP+ V  L   L++D            I  +YDPT
Sbjct: 181 TFGDAYLYLISKYATNAGKSGGEFFTPQTVSKLLARLVMDGK--------NKINKVYDPT 232

Query: 214 CGT 216
           CG 
Sbjct: 233 CGF 235


>gi|70730332|ref|YP_260071.1| type I restriction-modification system, M subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68344631|gb|AAY92237.1| type I restriction-modification system, M subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 580

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/551 (14%), Positives = 173/551 (31%), Gaps = 74/551 (13%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY--SLSTLGSTN 95
              L+RL+               +     +  E       +SF+          T  +  
Sbjct: 36  LIFLKRLDDIASADDEEGL---PSVFQVLMPDEVHPPNKHHSFWKNLLMHRDPGTYLNDQ 92

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIA----RLE--KAGLLYKICKNFSGIELHP-- 147
               L S +   + N  ++ +    +  ++    +L+  K+  L  +      +  +P  
Sbjct: 93  IFPWLRS-LEMRTGNYPSLVKRLGLNGMLSDAYFQLDPSKSQALTGLVHAIDELFPYPGQ 151

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                     ++E+L  +  +  +      +T R +     ALL          +P   +
Sbjct: 152 KRQEGFSPGEVFEYLFTQGSTSSNI--GPLVTARHITRFMVALL----------APLPGQ 199

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPILVPHGQELEPETHAVCVAGMLI 261
            + DP  GTGGF+  A  ++    +        +I       G +L      +    +L+
Sbjct: 200 RIIDPAAGTGGFMVSAQQYMLSRHARLSAATKKQIHNGHSLVGIDLSHTLARIGWVNLLL 259

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +ES      +  +   S  +   +  + + + LS+ PFG + +  + A          
Sbjct: 260 HDIESPQCMQGNSLVTGDSQGAAGRWLKESYDFVLSDLPFGGRIDPQEAAGANY--LPFY 317

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            R   G  +     +LF+    N L      GG AA+++  + L        + ++RR L
Sbjct: 318 ARDDQG-NRSDKVELLFVWRALNLL----QVGGSAALIIPQNLLV--GRSQAQIDLRREL 370

Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSN----------RKTEERRGKVQLINATD 429
           L    +EA++ LP  +F  + T I   + ++                 +   V     T 
Sbjct: 371 LSRHSVEAVILLPGAIFNPY-TGIKAAILVVRKVTDHQALASPHVAPPQTDAVWFYEVTQ 429

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
              S+ +   KR+ +  D    + D +V     + S  L             R   + F 
Sbjct: 430 DGHSMDH---KRKELPADADNDLFDAFVHFRRRQLSAEL-----------WERGRDLYFQ 475

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
                         W  L  + +     + + ++        +E+   +S+  +  +   
Sbjct: 476 AGAE------EGPYWTSLHNVIERGSTQVKQWLVPVRRKLRGSEALFPDSLDPDCIEAKD 529

Query: 550 VKASKSFIVAF 560
                      
Sbjct: 530 WSLDIDDYKVI 540


>gi|291563845|emb|CBL42661.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SS3/4]
          Length = 676

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 130/404 (32%), Gaps = 67/404 (16%)

Query: 54  AVREKYLAFGGSNIDL--ESFVKVAGYSFYNTSEY------SLSTLGSTNTRNNLESYIA 105
                Y +    +  L     +      F+   +       +   L     +  L++   
Sbjct: 226 EYLRTYGSLKDQDKPLVVSGILLALDDKFFKPDDLLGDETTTDGQLIYDAIQRRLKASNV 285

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
                   +  +F    T ARL +    L K    F    L  +   +    +  E  I 
Sbjct: 286 GPDAKRDKLMSEFSIIRTSARLNEVDAKLGKTPLKFYTEFLKKNVFDNIKYRSSSEDFIG 345

Query: 165 RFGSEV-------SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           RF  E         +     +TPR +  L   LL          +      + DP CGT 
Sbjct: 346 RFYGEFMSYSGGDGQTLGIVLTPRHICDLFCDLL----------NVQPSDIVLDPCCGTA 395

Query: 218 GFLTDAMNHVADCGSHHKIPPIL----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           GFL  AM+H+ +     ++          HG EL+    A+    M++R        D +
Sbjct: 396 GFLVAAMHHMLEKAGTDQVKRKNIKKKQLHGFELQSNMFAIAATNMILR-------DDGN 448

Query: 274 KNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            NI+    L ++      K     + NPP+ +  + D                       
Sbjct: 449 SNIKCEDFLRQNPAQVQLKGATVGMMNPPYSQGTKADP---------------------- 486

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S   + F+ HL + L      G RAA+++  S +        E   +  +L++  +E ++
Sbjct: 487 SQYELSFVEHLLDSL----TEGARAAVIVPQSSM--TGKTKDEQTFKENILKHHTLEGVI 540

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
              TD F+       + + +  +        + I+  +    +R
Sbjct: 541 TCNTDTFYGVGTNPVIAVFTAHEPHPDDKTCKFIDFRNDGYEVR 584


>gi|218960818|ref|YP_001740593.1| Restriction modification system DNA specificity domain:N-6 DNA
           methylase:Type I restriction-modification system, M
           subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167729475|emb|CAO80386.1| Restriction modification system DNA specificity domain:N-6 DNA
           methylase:Type I restriction-modification system, M
           subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 837

 Score =  123 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 141/450 (31%), Gaps = 88/450 (19%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y      + +         Y   + ++Y+ + L         E  +  + D    I  + 
Sbjct: 37  YKFMYDMDNESIELGGKPKYFTGDYAKYAWNRLFDQKLSG--EGRVMLYQDALTKIPNNA 94

Query: 119 DFSSTIARLEKAGLLY----KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
              +    + K   L     +  K F              + + +E+L+   GS+    A
Sbjct: 95  SIPTLFRDIFKNAFLPYRDPETLKLFLKCIDEFTYEHSEKLGDAFEYLLAVLGSQG--DA 152

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG--- 231
             F TPR ++     L+           P    ++ DP CGT GFL  A  H+       
Sbjct: 153 GQFRTPRHIIDFMVELI----------DPQKEDSILDPACGTAGFLISAYKHIIKTNSSN 202

Query: 232 ----------------------------------SHHKIPPILVPHGQELEPETHAVCVA 257
                                                +        G ++  E   + + 
Sbjct: 203 YDKVNDPHTFAMHNTPLDELVIQNGKKYTGDLLTPDQRAFLHKNIKGYDIAFEMVRLSLV 262

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M +           +  I +  TL+      +  +  L+NPPF       K  +   HK
Sbjct: 263 NMYLHGFN-------TPQIFEYDTLTSTERWNEYANVILANPPFMTP----KGGIRPHHK 311

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 F     +     +LF+ ++   L       GRA I++    +F     +   ++
Sbjct: 312 ------FTIQAKRS---EVLFVDYMLEHL----TNNGRAGIIVPEGIIFQSG--NAYKQL 356

Query: 378 RRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           R+ L+E + +  +++LP  +F  +   + T +  +      ++  K+  +   +      
Sbjct: 357 RKLLVEENYLVGVISLPAGVFNPYS-GVKTSILWIDKA-LAKKTDKIIFLKINNDG---F 411

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           + G +RR I  +      D  ++ +    S
Sbjct: 412 DLGAQRRPIEANDLPAAFDNAMAYKESVLS 441


>gi|300215354|gb|ADJ79767.1| Modification subunit [Lactobacillus salivarius CECT 5713]
          Length = 463

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 146/421 (34%), Gaps = 56/421 (13%)

Query: 117 DFDFSSTIARL----EKAGLLYKICKNFSGIELHPDTVPDRVMSNI-----YEHLIRRFG 167
            F++   +  L    EK   L  I ++ SG      +       +      +E  +    
Sbjct: 83  KFEYVELVKSLYNIEEKNPKLKNIFQDVSGSTSSLPSETAFEKIDSRNEVSFEENLEIIK 142

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
                      T +++  L T L+    + +         ++YDP  GT   L       
Sbjct: 143 RSSGARDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPALGTASLL------- 186

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              G +         +GQE+  +   + +   ++  ++ D     ++N     TL+ +  
Sbjct: 187 --LGINRDALKENKYYGQEINTQVIKIAIMNAIVNDVDDDKFEFKNEN-----TLANNW- 238

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +    +S+PP   KW  D++  +              +P  +     F++   +KL 
Sbjct: 239 EFGKVDIVVSDPPINMKWNVDRNLSQDRRYRDYGE-----MP--NKADWGFILDGIDKL- 290

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
              +  G   + +    LF G     E  IRR LLE+  I A++ LP +    T IAT L
Sbjct: 291 ---SDNGMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLPGNTKISTTIATCL 344

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSR 466
            +L     ++    V  INA+  +     E     I+ +    +I+DI+  ++  K FS 
Sbjct: 345 LVLRKSSEDK---DVFFINASQEYEKKGLE----NILTEANVDKIVDIFNEKKEEKGFSH 397

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           +  Y         +     ++    K  L   E      KL           LK +M  +
Sbjct: 398 VASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQT-DATLKNLMGDL 456

Query: 527 Y 527
            
Sbjct: 457 G 457


>gi|146318349|ref|YP_001198061.1| HsdM [Streptococcus suis 05ZYH33]
 gi|146320544|ref|YP_001200255.1| HsdM [Streptococcus suis 98HAH33]
 gi|145689155|gb|ABP89661.1| putative HsdM [Streptococcus suis 05ZYH33]
 gi|145691350|gb|ABP91855.1| putative HsdM [Streptococcus suis 98HAH33]
          Length = 299

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/211 (24%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           +    NI QG+T+  +    ++  Y +SNPPF   + + +D V  E       RF  G+P
Sbjct: 39  QHSIHNIVQGNTILNNRHV-EKMDYIVSNPPFKLDFSEWRDQV--ESLPNSSERFFAGVP 95

Query: 330 KISDGS-------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           KI +          LF+ H+ + L+      G+AAIVL +   F       + +IR+ L+
Sbjct: 96  KIPNKKKESMAIYQLFIQHIIHSLKED----GQAAIVLPTG--FITAQSGIDKKIRQHLV 149

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           +  ++  +V++P+++F  T     +  +  +     +  V LI+A++L T ++    ++ 
Sbjct: 150 DEKMLAGVVSMPSNIFATTGTNVSILFIDKK----NKDDVVLIDASNLGTKVKEGKNQKT 205

Query: 443 IINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           +++ D+  QI+  ++++E  + FS  + Y  
Sbjct: 206 VLSPDEESQIIQTFINKEVVEDFSVKVSYEE 236


>gi|170718360|ref|YP_001783586.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826489|gb|ACA31860.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 461

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/427 (16%), Positives = 134/427 (31%), Gaps = 73/427 (17%)

Query: 161 HLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
             ++ F    ++        TP  +  L + L               + ++ D   GTG 
Sbjct: 47  CFLQEFQENFADRKSLKQDFTPSAICQLVSRL------------TPEVDSVLDVCAGTGA 94

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                           K+ P    + QE   E  A  +  + +R + ++ +     ++  
Sbjct: 95  LTIA----------KWKVNPNATFYCQEYSKEAIAFLLFNLCVRGITAEVKHC---DVLT 141

Query: 279 GSTLSKDL----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           G T ++                  + G +    +SNPP+  KW                 
Sbjct: 142 GETFAEYRLTRNGQYSDIENTKLDWRGLKVDCVVSNPPYSAKWNPVS-----------DE 190

Query: 323 RFGP-GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           RF   GL   +     F++H  + L+      G A  +L    LF G     E +IR+ L
Sbjct: 191 RFEYFGLAPKNAADYAFVLHGLHHLKEE----GTAHFILPHGVLFRGN---SEGKIRQKL 243

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           +E     +++ LP +LF    I T +     +        + +I+A DL+   ++     
Sbjct: 244 IEQGYFSSVIGLPDNLFISAKIPTAILTFKKQ-----SSDIYVIDAADLFEKAKS----N 294

Query: 442 RIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
            I+  +   Q+L  Y  R N  K + + +Y         +  P  +        +  L+ 
Sbjct: 295 NIMRPEHVNQVLTAYQLRHNIDKLAHLANYTEIQQNDFNLNIPRYVDKSEPDPEIDLLKE 354

Query: 501 DITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                 L+   +      +  + +    +G AE   +          +          A 
Sbjct: 355 AQELLDLTNDIEKSGQAFVAMLAELEMTHGSAEDKAEFEQVKQILAQV-FAPRTKEKKAI 413

Query: 561 INAFGRK 567
                 K
Sbjct: 414 QQLISSK 420


>gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
 gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
          Length = 842

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/480 (17%), Positives = 159/480 (33%), Gaps = 79/480 (16%)

Query: 1   MTEFTGSAASLANF---IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M+    S     N    IWK  + + G    +D+  +      +R ++      R     
Sbjct: 1   MSTNNSSHRDARNQARDIWKLIDYIRGASSISDYRSLAYSLLFIRYMQAK-TGERFEYSN 59

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
            Y +   SN       +      ++            +    L  + +    N +    D
Sbjct: 60  FYSSEDISNFIDNLVQRCIDSEMFHHDVAGFLR---EHISYVLLKHGSINEPNVRLALSD 116

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            +F ++     +A L        S +++                    F    S+   +F
Sbjct: 117 -NFKNSSRSFVEATL--------SELDIL-------------------FAENESKSGGEF 148

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+DV  L T L           +     ++ DP  G G     A +  +  G++  I 
Sbjct: 149 YTPQDVNWLVTRL----------GAEYEPDSVCDPFAGAGST---AFSFDSALGTYFNID 195

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
              V      +     +                D+      G +LS   +  +++    S
Sbjct: 196 TQEVNRDAHFQIVVSRIVK--------------DVYGKDYLGDSLSTPYYQSQQYDLVAS 241

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRA 356
            PPFG K  K       E +          LP+  SD        +   +    N  G+ 
Sbjct: 242 FPPFGMKIPKSNRRQILERRGNYWLEQAYNLPESRSDW------FVTLSMLPALNKKGKL 295

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
              +S + +    A   E++IR +L+    IE ++ LP +++  T+I++ L +L+N+   
Sbjct: 296 ITGMSLASMTRSGA---ETKIRSFLVAQGNIEKVILLPKNIYHSTSISSVLLVLNNKSDG 352

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS---RENGKFSRMLDYRTF 473
           E+R  +Q ++A+  +   R     R  ++ D   +I+   +S         S  +    F
Sbjct: 353 EKRRDIQFVDASLFYQPARG----RNTLSFDNIEKIVASCLSDGRFSKTISSEDVANNNF 408


>gi|225573238|ref|ZP_03781993.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039370|gb|EEG49616.1| hypothetical protein RUMHYD_01429 [Blautia hydrogenotrophica DSM
           10507]
          Length = 927

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 141/428 (32%), Gaps = 73/428 (17%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI--ARLE-KAGLLYKICKNFS 141
             +   L S + +  +   I         +  D D+        LE     +  I     
Sbjct: 279 RATPVELKSDSGKAEIRRRIDGLYA---KLLSDPDYGEMFKDETLEYDNESIAYIVSILQ 335

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           G+ L  +      + + YE L+    S +   +  F TPR++V  A  ++          
Sbjct: 336 GLSLTDEETNTDALGDAYEVLL---PSTLKGESGQFFTPREIVRFAIEVIAP-------- 384

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------------PHGQE 246
           +      + D  CG+ GFL+ A+ ++    +                          G +
Sbjct: 385 NYSKKEYILDTACGSAGFLSVALENIRKQINTLYANRGFSKEKKRGMLKDYAGKYVFGCD 444

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-----SKDLF----TGKRFHYCLS 297
           ++P  + +  + M I         +   NI    +L         F    T        +
Sbjct: 445 IDPLLYRISKSYMAIMG-------EGKGNIYNLDSLDLTNRLDPNFRRSVTEGSVDIITT 497

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNG-- 352
           NPPFG + +  +  V + +  G     G    ++ +G     LFL    + L+   N   
Sbjct: 498 NPPFGTQIKDTRRDVLRTYDLGHKIINGEPTNEVLEGQDPDKLFLERDISYLKEATNDAD 557

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILS 411
           GGR  IVL    L    A     E R+WLL+   I AIV LP + F   T   T L  L 
Sbjct: 558 GGRMVIVLPKQNL--SGAKEESVEFRKWLLKRVQITAIVDLPREAFQPHTGTKTSLVFLK 615

Query: 412 NRKTEERRGKVQL---------------INATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             +       + +                      T +RN+  +R I ND    +ILD Y
Sbjct: 616 KVRNIPDNYPIFMAVSEAVGHDRRGLPLYKKDSNGTDLRNDKNERVIWND--LPEILDRY 673

Query: 457 VSRENGKF 464
                  F
Sbjct: 674 KEYTEKGF 681


>gi|163801595|ref|ZP_02195493.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
 gi|159174512|gb|EDP59314.1| type I restriction-modification system methyltransferase subunit
           [Vibrio sp. AND4]
          Length = 639

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 153/420 (36%), Gaps = 71/420 (16%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              + IFE   F     R+    +LY +      I+L  D   D     +  ++I+  GS
Sbjct: 106 KKIENIFEQIPF-----RIRSNKILYLVIHKLEEIDLFEDIEVDFD--YLLLNMIKDSGS 158

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                   + +PR ++    + L          +P  + T+YDP  GTGGF  +A+ HV 
Sbjct: 159 S-----GAYYSPRPLIKAMVSAL----------NPEPLTTVYDPAMGTGGFFVEAIKHVK 203

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +      L   G +L P  H + +  +L+  ++               +L      
Sbjct: 204 ----NKSYFNDLNFIGNDLSPFAHLIGMLNLLLNDIDISGVSIS-------DSLLN--RD 250

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            +++ + +S  PFG   + ++    + + +G  G              +FL H  +KL  
Sbjct: 251 CQQYDFVISGVPFG---KVNELTKYEYYYHGYSGSLEA----------MFLKHTMDKLAK 297

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GGRAAIV+    LF   +   E  ++R LL    +  +++LP       + +   +
Sbjct: 298 ----GGRAAIVIPDGILFGNASHLDE--LKRQLLTQFNLHTVLSLPKGTLAPYSGVKVSV 351

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
               N  +E+    +                 K   I D        +Y  RE  + S +
Sbjct: 352 LFFDNTVSEK---DIWFYELR-----TDKPLSKLNSITDSDFEDFTSLYERREVSEHSCL 403

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
           +   +    +      L +SF L     A L+ D   +K+  L +S  L ++  + +   
Sbjct: 404 ISKESLLQDK-----TLNLSFSL-PKKEAGLKFDK--QKMIALLKSEQLALVTSIEKHFD 455


>gi|227892124|ref|ZP_04009929.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
 gi|227866056|gb|EEJ73477.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Lactobacillus salivarius ATCC 11741]
          Length = 463

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 91/500 (18%), Positives = 164/500 (32%), Gaps = 77/500 (15%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG-----YSFYNTSEYSLSTLGST 94
           +LR+ +   + +   V++KY     +  D +  +         Y  Y  +++    L  +
Sbjct: 35  VLRKFDK--DGSILEVQKKYEEGKETVQDAQFVIAPQDTYYHHYQMYKANKFEYVELVKS 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                    I   +   K IF+  D   + + L            F  I+   +      
Sbjct: 93  LYN------IEEKNPKLKNIFQ--DVRGSTSSLPSET-------AFEKIDSRNEVS---- 133

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
               +E  +               T +++  L T L+    + +         ++YDP  
Sbjct: 134 ----FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPAL 180

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GT   L                      +GQE+  +   + +   +I  +  D     + 
Sbjct: 181 GTASLLLGINRAALKENK---------YYGQEINTQVIKIAIMNAIINDVADDKFEFKNA 231

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           N     TL+ +     +    +S+PP   KW  DK+  + +            LP  +  
Sbjct: 232 N-----TLANNW-EFGKADIVVSDPPMSMKWNIDKNLSQDKRYQDYGD-----LP--NRA 278

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++   NKL       G   + +    LF G     E  IRR LLE+  I A++ LP
Sbjct: 279 DWGFILDGINKLSDD----GMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLP 331

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +    T IAT L +L     ++    V  INA+  +     E     I+ +    +I+D
Sbjct: 332 GNTKISTTIATCLLVLRKSSEDK---DVFFINASQEYEKKGLE----NILTEANIDKIVD 384

Query: 455 IYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           I+  ++  K FS +  Y         +     ++    K  L   E      KL      
Sbjct: 385 IFNEKKEEKGFSHVASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQ 444

Query: 514 FWLDILKPMMQQIYPYGWAE 533
                LK +M  +       
Sbjct: 445 T-DATLKNLMGGLGLMEIDN 463


>gi|46487195|gb|AAS98975.1| Tgh014 [Campylobacter jejuni]
          Length = 154

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 51/203 (25%)

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             FGY +I + +P  +  + D    A+L+            +   L+ L+ + Q    + 
Sbjct: 1   EDFGYTKIIIEKPKSIEALKDDEKFAKLK-----------DKDKILEKLQELEQNPQDFK 49

Query: 531 WAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE- 589
             E F+         K L VK  KS     I                      D++ T  
Sbjct: 50  NREEFI---------KFLGVKLKKSEENLII----------------------DSDKTNN 78

Query: 590 YENVPYLESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRK 649
            E +P   +IQ Y+  EV P+V +++I          E   VGYEI F+++FY Y P RK
Sbjct: 79  TEKIPLKTNIQGYYDTEVKPYVANSWIA--------WESASVGYEILFSKYFYTYTPPRK 130

Query: 650 LQDIDAELKGVEAQIATLLEEMA 672
           L++I+ EL+ +E ++  LL E+ 
Sbjct: 131 LEEINNELEKLEKEVQDLLREIV 153


>gi|296258260|gb|ADH04257.1| putative HsdM-type I modification subunit [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 165

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 22/183 (12%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + K    +EL     P   + + YE+LI +F S+  + A +F TP++V  L   L L   
Sbjct: 3   VIKAIGKLELV--KTPGDTLGDAYEYLISQFASKSGKKAGEFYTPQEVSELLARLTLVGK 60

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           D           ++YDP  G+G  L +   +V +          +  +GQE+   T  + 
Sbjct: 61  D------YSSGMSVYDPAMGSGSLLLNFRKYVPNSS-------RITYYGQEINTSTFNLA 107

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVE 313
              M++  ++       ++ ++ G TL +D    +   F   + NPP+  KW  DK  ++
Sbjct: 108 RMNMILHHVDL-----ANQKLRNGDTLDEDWPAEETTNFDSVVMNPPYSLKWSADKGFLD 162

Query: 314 KEH 316
              
Sbjct: 163 DPR 165


>gi|256375106|ref|YP_003098766.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255919409|gb|ACU34920.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 677

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/274 (21%), Positives = 97/274 (35%), Gaps = 48/274 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E L  RF           +TPR++  L   L                 T++DP CGTG
Sbjct: 123 AFEQLHDRFVEAN--WRGVAVTPRELARLMVDL------------TEPHGTVFDPACGTG 168

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+          +  P + P GQEL+P    V +A +               +++
Sbjct: 169 ALLRAAV----------RSEPGIRPVGQELDPSLAQVAIARLA--------FAAGEASVR 210

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L  D F        +SNPPF  +    +       +     R+  G+P   +  + 
Sbjct: 211 SGDSLRNDAFPELVADVVVSNPPFNIRNWGAE-------ELAYDRRWVYGVPPKGESELA 263

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    L      GG A +++  +             IR  LL +  + A+VALP   
Sbjct: 264 WVQHCLAHLRP----GGHAVVLMPPAVASRRSGRP----IRAELLRSGTLRAVVALPPGA 315

Query: 398 FFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430
               ++   +W+L   +     R  V  I+    
Sbjct: 316 AAPLHVGLQIWVLRRPEPGGADRRTVLFIDTAGE 349


>gi|163796256|ref|ZP_02190217.1| N-6 DNA methylase [alpha proteobacterium BAL199]
 gi|159178398|gb|EDP62940.1| N-6 DNA methylase [alpha proteobacterium BAL199]
          Length = 807

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/359 (20%), Positives = 117/359 (32%), Gaps = 69/359 (19%)

Query: 92  GSTNTRNNLESYIASFSDNA-KAIFED-FDFSSTIARLE-KAGLLYKICKNFSGIELHPD 148
              N   ++         NA KA+            +L  KA  +  I +  +   L  +
Sbjct: 219 DPRNILGDINQACEKAFWNAGKAVLAKSLHVDEANDKLAVKARRIISILERLNVSVLTAE 278

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +  +YE     F          + TPR +      LL    D +          
Sbjct: 279 H---DYLGQLYETF---FRYAGGNTIGQYFTPRHIASFGADLLGVSIDDV---------- 322

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHK----IPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + DPTCGTGGFL  AM  VA      +            G + EP T A+CVA M++R  
Sbjct: 323 VLDPTCGTGGFLIAAMERVAREHQISRSEMVKLVSTRLIGFDDEPITAALCVANMILRG- 381

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 D S ++ +G   +   +        L NPP+  K                    
Sbjct: 382 ------DGSSSVHRGDAFTAPEYPIGTASVVLMNPPYPHKQTDTPTE------------- 422

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                        F+      L    + G R A V+  S L      S     R+ +L+N
Sbjct: 423 ------------AFVERALEGL----SQGSRLAAVIPLSLLVKSNKAS----WRKAILKN 462

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
           + +EA + LP +LF        + +   +     +GK         +  I N+G + R 
Sbjct: 463 NTLEAAIKLPDELFQPYAQPYTVIVYLRKGIPHPKGK------RAFFARIENDGFRIRK 515


>gi|295111478|emb|CBL28228.1| Type I restriction-modification system methyltransferase subunit
           [Synergistetes bacterium SGP1]
          Length = 825

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 82/438 (18%), Positives = 146/438 (33%), Gaps = 74/438 (16%)

Query: 54  AVREKYLAFGGSNIDLE-----SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA--- 105
                Y      +  L        +    +  +     + S +   +  + L   I    
Sbjct: 186 EYLRTYGTLKDQDKPLVVAGILLALDEVKHEEFKIDNLTGSQVDKNHDGDKLMKAINTRL 245

Query: 106 -----SFSDNAKAIFEDFDFSSTIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
                        +  +F   +T  RL +   +L K    F    L+     +       
Sbjct: 246 TRSNVGPDAKKDKLLSEFSILNTSFRLNEVNDVLGKTPLKFYTKFLYDRVFRNIKYQKTS 305

Query: 160 EHLIRRFGSEV-------SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
           E  I RF  E         +     +TPR +  L   L+    + +          + DP
Sbjct: 306 EDFIGRFYGEFMSYSGGDGQTLGIILTPRHITDLMCDLVDVQVNDV----------VLDP 355

Query: 213 TCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           TCGT GFL  AM+ +    D  +  K       HG EL+    AV  A M++R       
Sbjct: 356 TCGTAGFLISAMHKMLSMSDSDAQRKDIKKKQLHGFELQSNMFAVAAANMILR------- 408

Query: 270 RDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            D + N++    L K+      K     L NPP+ +  + D                   
Sbjct: 409 HDGNSNLECTDFLKKNPAQVQMKGATIGLMNPPYSQGTKADP------------------ 450

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S   + F+ HL + L      GGRAA+++  S +    A   E   +  +L+N  +
Sbjct: 451 ----SQYELSFVEHLLDSL----TEGGRAAVIVPQSSMTGKSAE--EKVFKESILKNHTL 500

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ-LIN-ATDLWTSIRNEGKKRRIIN 445
           E ++   T+ F+       + + +  +      KV   I+   D + +  + G       
Sbjct: 501 EGVITCNTETFYGVGTNPVIALFTAHEP-HPEDKVCKFIDFRNDGFETRAHVGLVEGDSA 559

Query: 446 DDQRRQILDIYVSRENGK 463
            D+++ +LD++  R    
Sbjct: 560 KDKKQHLLDVWNGRIEAP 577


>gi|257795446|ref|ZP_05644425.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
 gi|257789418|gb|EEV27758.1| type I restriction-modification system [Staphylococcus aureus
           A9781]
          Length = 199

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 16/206 (7%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DL 386
           L   S     F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+E  + 
Sbjct: 7   LAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNY 59

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +      GK +  ++D
Sbjct: 60  LEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSD 113

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
            Q  +I+D Y  +E   K+S     +        +  P R     ++     L+      
Sbjct: 114 AQVERIIDTYKRKETIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDL 172

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGW 531
           K      +     +   ++++     
Sbjct: 173 KNIDKEIAEIEQEINAYLKELGVLKD 198


>gi|317048486|ref|YP_004116134.1| N-6 DNA methylase [Pantoea sp. At-9b]
 gi|316950103|gb|ADU69578.1| N-6 DNA methylase [Pantoea sp. At-9b]
          Length = 632

 Score =  120 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 155/447 (34%), Gaps = 84/447 (18%)

Query: 43  RLECALEPTRS--AVREKYLAFGGSNIDL---ESFVKVAGYSFYNT-SEYSLSTLGSTNT 96
           RL   +  ++        Y     S   L      + ++  +F    S Y+   L     
Sbjct: 174 RLSDLMSFSKELHNYMRDYAKLSESEKPLLVSGVLIALSNIAFSKVFSIYTPDEL-PEKL 232

Query: 97  RNNLESYIASFS---DNAKAIFEDFDFSSTIARLEKAGLL------YKICKNFSGIELHP 147
            + +E  I          + + + + F      L +A  L      Y +    +      
Sbjct: 233 CDAIEEEIKKSDIPHAKKQNMIQPYSFLRVHPELSRADKLTGESPLYNLIDKINTHAWPF 292

Query: 148 DT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            +      ++   Y   +R  G +  +     +TPR +  L + +     D+        
Sbjct: 293 ISVYHDYDIIGQFYGEFLRYTGGD-KKALGIVLTPRHITDLFSRIANVQKDS-------- 343

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG---QELEPETHAVCVAGMLIR 262
             T++DP CGTGGFL  AM+ +            +  +G    E +P  +A+  + M++R
Sbjct: 344 --TVFDPCCGTGGFLVSAMHQMFKKCITEDEKARVKQYGLIGVEQQPNMYALAASNMILR 401

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                   D   N+ QGS     +      ++    + NPP+ +K +             
Sbjct: 402 G-------DGKANLHQGSCFDDAITKEINSRQPDIGMINPPYAQKGKGLH---------- 444

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           + F+ H+ + L +   GG   AIV  S  +          E + 
Sbjct: 445 ---------------ELAFVEHMLDCLRV---GGIGIAIVPMSCVI-------TPHETKH 479

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTSIRNE 437
            LL    +EA++++P +LF      T + + +  K  E  G K        D +   + +
Sbjct: 480 TLLSKHCLEAVMSMPDELFTPVGTITCIMVFTAHKPHEAEGRKTWFGYWKDDGFEKTKQQ 539

Query: 438 GKKRRIIN---DDQRRQILDIYVSREN 461
           G  R  ++   ++ R + L  Y +RE+
Sbjct: 540 G--RTDVSGRWENIRDKWLHSYKNRED 564


>gi|311900119|dbj|BAJ32527.1| putative DNA methyltransferase [Kitasatospora setae KM-6054]
          Length = 479

 Score =  120 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 103/304 (33%), Gaps = 37/304 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           F      ++   +L ++                      +   L+ R    +     D+ 
Sbjct: 102 FVDAHQSIDDPVVLRELIAVLDEGLARDAGSVSADDEGEVLSDLLERALQHLRGSDPDYY 161

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP- 237
           TPR +V L  A +           PG   T+ DP C  G FL  A  ++ +     +   
Sbjct: 162 TPRALVDLVVATV----------RPGPDDTITDPACKAGSFLIAAHRYIREHDPGTEPRS 211

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G E       +  A +L+  +           +   S  +     G      ++
Sbjct: 212 AGGRIRGNE--SALIGLAGANLLLHGI---TEHADCPGVTNESPFALPPMPGAT--VVIA 264

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPFG     +K  VE                + S  ++ +L H+ + L      GGRA 
Sbjct: 265 NPPFGTMKGGEKSVVESRADLPV---------RTSSKALDYLQHIMSVLLP----GGRAG 311

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTE 416
           +++  S LF   A     ++RR LL+   +  ++ LP   F     + T + +   +   
Sbjct: 312 VIVPDSVLF---ATGAARDVRRLLLQTFDVHTLIRLPAGAFPTARGVRTSILLFDRQ-PT 367

Query: 417 ERRG 420
           ERRG
Sbjct: 368 ERRG 371


>gi|291539611|emb|CBL12722.1| Type I restriction-modification system methyltransferase subunit
           [Roseburia intestinalis XB6B4]
          Length = 200

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 71/200 (35%), Gaps = 16/200 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M E   +       IW  A  LWG    +++  VI+    LR +  A +     +  +  
Sbjct: 1   MAEKNTANIGFEKQIWDAACVLWGHIPASEYRNVIIGLIFLRYISTAFDKKYQQLLSE-- 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR-------NNLESYIASFSDNAKA 113
              G   + +    +    F+   E     + +   +       +N    I + +   K 
Sbjct: 59  ---GDGFEDDPDAYLEDNVFFVPVEARWDKIAAAAHKPEIGTTIDNAMRAIEADNKKLKN 115

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           +      S  + +     +L  +   F+ +++        V+   YE+ I +F  +  +G
Sbjct: 116 VLPKNYASPDLDK----RVLGDVVDLFTNMDMGETEGNRDVLGRTYEYYIAQFAEKEGKG 171

Query: 174 AEDFMTPRDVVHLATALLLD 193
             +F TP  +V+   ++L  
Sbjct: 172 GGEFYTPSSIVNTLASILKP 191


>gi|290509518|ref|ZP_06548889.1| N-6 DNA methylase [Klebsiella sp. 1_1_55]
 gi|289778912|gb|EFD86909.1| N-6 DNA methylase [Klebsiella sp. 1_1_55]
          Length = 1304

 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 96/555 (17%), Positives = 188/555 (33%), Gaps = 84/555 (15%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLST 90
                 F LLR ++   +    AV   +       +            F N     +L+ 
Sbjct: 15  RDFFSAFLLLRWID-IHDAEGEAV-ALFEEKDYHPLLPSYL------RFQNWPHPITLTD 66

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L  T   ++L +Y+A        +      +  + +L +   L +     + I  +   +
Sbjct: 67  L--TAFVSSLVAYLARHDRQEIPVLNA--LNEIVQKLHETH-LAQFTATVNWIASYARGM 121

Query: 151 PD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
           PD  +++S ++E ++          A  F  P    +L T ++          SP     
Sbjct: 122 PDERQMLSTMFETVL---NETEDMRAGYFTAPDVTTYLVTEIM----------SPEAGEK 168

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESD 267
           +YDP  G+GGFL  A   V        I        G E          A + +  + + 
Sbjct: 169 VYDPCSGSGGFLLSAFEKVRRSRPDTGISDGGTSFIGCE--------ARADVFLYGI-TR 219

Query: 268 PRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                + NI   + L  +       ++   ++ P  G K+   + +  +           
Sbjct: 220 LILAGATNIHLMTKLPSEGTHTSRDKYDVVMTTPVTGAKYISSEASKNEFLFPDTD---- 275

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S G   F+ H+ + L+      GRAAIV+    LF G A     E+R++LL+  
Sbjct: 276 ------STGQ--FIQHVFSSLKTE----GRAAIVVPDGFLFRGGAD---RELRQYLLKEG 320

Query: 386 LIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            +EA+VALP   LF  + +   L IL   +  +R   +++++A+ L+   R+ G K   I
Sbjct: 321 AVEAVVALPAGTLFRHSTLRGNLLILRKNR-VKRTESIRMVDASLLFE--RSPGSKTLSI 377

Query: 445 NDDQRRQIL---------DIYVSRENGKFS---------RMLDYRTFGYRRIKVLRPLRM 486
                  ++           Y   ++G +S         R+          + V      
Sbjct: 378 TQANTDILVNASTDRDVRRTYDIIQDGTYSFFDISSPSERIFSNLEDFAWDVTVDELSLT 437

Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
            + L      R + ++       L ++  +  L  + +         + + +S  +    
Sbjct: 438 GWDLTPRR--RNDKELYQFFNDTLDETSKIASLVSISEVFPGRVHKSTELFDSPLNKTDA 495

Query: 547 TLKVKASKSFIVAFI 561
              ++    F     
Sbjct: 496 VGYIRIKNLFQGKIT 510


>gi|90962730|ref|YP_536645.1| modification subunit [Lactobacillus salivarius UCC118]
 gi|90821924|gb|ABE00562.1| Modification subunit [Lactobacillus salivarius UCC118]
          Length = 465

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 131/377 (34%), Gaps = 47/377 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E  +               T +++  L T L+    + +         ++YDP  GT  
Sbjct: 134 FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPALGTAS 184

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L          G +         +GQ++  +     +  +++  ++ D     ++N   
Sbjct: 185 LL---------LGINQAALKENRYYGQDISTQAIKTAIMNVIVNDVDDDKFEFKNEN--- 232

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             TL+ +     +    +S+PP   KW  D++  +              +P  +     F
Sbjct: 233 --TLANNW-EFGKVDIVVSDPPINMKWNVDRNLSQDRRYRDYGE-----MP--NKADWGF 282

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++   +KL    +  G   + +    LF G     E  IRR LLE+  I A++ LP +  
Sbjct: 283 ILDGIDKL----SDNGMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLPGNTK 335

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T IAT L +      ++    V  INA+  +     E     I+ +    +I+D +  
Sbjct: 336 LSTTIATCLLVFRKSSEDK---DVFFINASQEYEKKGLE----NILTEANVDKIVDTFNE 388

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           ++  + FS M +Y         +     ++    K  L   E      KL          
Sbjct: 389 KKEVQRFSHMANYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQT-DA 447

Query: 518 ILKPMMQQIYPYGWAES 534
            LK +M  +      + 
Sbjct: 448 TLKNLMGDLGLMEINDQ 464


>gi|257451600|ref|ZP_05616899.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. 3_1_5R]
 gi|317058168|ref|ZP_07922653.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_5R]
 gi|313683844|gb|EFS20679.1| type I restriction-modification system methylation subunit
           [Fusobacterium sp. 3_1_5R]
          Length = 328

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 149/385 (38%), Gaps = 64/385 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M    + + + F S        F TP ++     + +    D            +YDPTC
Sbjct: 1   MGYDIKSIKKEFAS-----KGIFYTPPELAEFLKSFVDIDTDE-----------VYDPTC 44

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G G  L+   + V               +GQ++ P              +E         
Sbjct: 45  GHGSLLSVFGDEVKK-------------YGQDINPVA------------IEYIKENFPHF 79

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           +++ G T+ +D F+ K+F   L+NPPF  K+E +++ +  +            L   S  
Sbjct: 80  HVELGDTIQEDKFSEKKFKVILANPPFSVKYEPNEEMLLDKRFKDCGI-----LSPASKA 134

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             +F +H+ +KL+      G A ++     L+       E EIR+WL+EN+ I+ IV + 
Sbjct: 135 DYMFNLHILHKLKE----NGIAVVMNFPGILYRKNK---EGEIRKWLIENNYIDTIVHIA 187

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
              F  TNIAT L I    K       ++ +++      + +       I ++     + 
Sbjct: 188 GKKFEDTNIATCLIIYRKNK---VTTDIKFVDSEFNLERMVSLE----EIRENNYNLSIS 240

Query: 455 IYVSRENGKFSRMLDYRTFGYRR---IKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            YV +E  K    +D       R   I +   L+++  L ++  A+++ ++   K+  L 
Sbjct: 241 TYVQKEEQKEEINIDDVNEEANRHFLIHLEETLKVNLFLVQSLEAKIDYEMFLNKIGGLV 300

Query: 512 QSFWLDILKPMMQQIYPYGWAESFV 536
           +  +    K   ++  P  W E  +
Sbjct: 301 RK-YRSKFKNREKEEIPKQWEEQLL 324


>gi|254300673|ref|ZP_04968118.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 406e]
 gi|157810477|gb|EDO87647.1| type I restriction enzyme R protein N terminus (HSDR_N)/N-6 DNA
           methylase [Burkholderia pseudomallei 406e]
          Length = 605

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/292 (21%), Positives = 101/292 (34%), Gaps = 48/292 (16%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            L+ A     + +  + +     T         +E+ +R   +   +    + TPR +V 
Sbjct: 6   HLKVAKTFLYLVRQLAAVSFTDSTTDS--KGAAFEYFVR--ATLKGKKLGQYFTPRPLVR 61

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--------DAMNHVADCGSHH--- 234
           L +A++          S      + DP CGTGGFL          A   +AD   +    
Sbjct: 62  LMSAIVGQEKIVNALLSGAAAPKVLDPACGTGGFLVYLMGDSLRVANQKLADRAINAATH 121

Query: 235 ----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288
               +     V  G +            M++         D   NIQ  ++L++      
Sbjct: 122 RELVRKIRQQVFFGSDANEGVACAAKMNMIVAG-------DGHSNIQPENSLARTAKNWN 174

Query: 289 --GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                  + L+NPPFG               + ++G+F     K   G +LFL     K+
Sbjct: 175 IQDSDCDFILTNPPFGTSESGALS-------DKDMGQFEVQTTK---GQLLFLQ----KM 220

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            L    GG    V+    L    A      IR+WLL    + A+V LP + F
Sbjct: 221 VLSARRGGEICTVIDEGVLNTDTAAP----IRKWLLSKAKLLAVVRLPDETF 268


>gi|294502090|ref|YP_003566155.1| Type I restriction-modification system, M subunit [Salinibacter
           ruber M8]
 gi|294342074|emb|CBH22739.1| Type I restriction-modification system, M subunit [Salinibacter
           ruber M8]
          Length = 462

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 138/408 (33%), Gaps = 61/408 (14%)

Query: 36  LPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           L     + +           R +   +     D +       Y F     +    L +  
Sbjct: 44  LSLIFYKAVSDT-------YRGQLRKWTEELGDEDLARDSDLYRFTVPQGHGWEELRAQ- 95

Query: 96  TRNNLESYIASFSDNAKAI-------FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
              N++ ++       +             D+      L    LL ++ ++ S  +L  +
Sbjct: 96  -EENVDRFLNESLRAIEDANRQRLAGISRVDYVRE-EALTDR-LLNRLVEHLSQYDLSLE 152

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +   V+   +     +  ++   G +   T   +  L   L+   +             
Sbjct: 153 RIRPNVLGRAFVDF-AQVLTDKKRGNQPPETSETIARLMVRLVAPFE---------AGDR 202

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           +YDP CG G  L +   H  +     + P  L   GQE++P+  A+    + I       
Sbjct: 203 IYDPACGIGRLLMEVARHHRE--EQQEDPTHLFLAGQEVDPDQAALARMAIAISGFHGR- 259

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR----FHYCLSN-PPFGKKWEKDKDAVEKEHKNGELGR 323
                  I++G +L    FT  +    F   L++ PP G+K   D        ++   GR
Sbjct: 260 -------IERGDSLRDPKFTEGKALSQFDCVLADLPPPGQKPLPDV-------QDDPYGR 305

Query: 324 FGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           F     LP  +  +  FLMH+ ++L       G AA+ +    L        E  +R+ L
Sbjct: 306 FDWTDDLPGQNGDTWAFLMHITSQLGEE----GEAAVTVPRPAL-----QEAEPGLRKEL 356

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           +  +L+ A++ L + +F        L +L     E   G++      D
Sbjct: 357 VTRNLLRAVIGLDSAVFEDVPTGKVLLLLREDDVEAAGGEILFYQTPD 404


>gi|257794185|ref|ZP_05643164.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
 gi|257788157|gb|EEV26497.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A9781]
          Length = 199

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 16/206 (7%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DL 386
           L   S     F+ H+ + L+      G  A+VL    LF G A   E  IRR+L+E  + 
Sbjct: 7   LAPKSKADFAFIQHMVHYLDDE----GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNY 59

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +EA++ LP ++F+ T+I T + +   +K  ++   V  I+A++ +      GK +  ++D
Sbjct: 60  LEAVIGLPANIFYGTSIPTCILVF--KKCRQQDDNVLFIDASNDFEK----GKNQNHLSD 113

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
            Q  +I+D Y  +    K+S     +        +  P R     ++     L+      
Sbjct: 114 AQVERIIDTYKRKATIDKYSYSATLQEIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDL 172

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGW 531
           K      +     +   ++++     
Sbjct: 173 KNIDKEIAEIEQEINAYLKELGVLKD 198


>gi|301062619|ref|ZP_07203251.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300443299|gb|EFK07432.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 421

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 130/424 (30%), Gaps = 98/424 (23%)

Query: 1   MTEFTGSAASLANFIWK------NAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
           M +   S  S  + +W        A  L    +       I     +RR++      +  
Sbjct: 1   MLQNNPSLKSKIDQLWNKFWAGGIANPL-TAIEQ------ITYLLFMRRMDDL--DLKQQ 51

Query: 55  VREKY------LAFGGSNIDLESFVKVAG--YSFYNTS---EYS-LSTLGSTNTRNNLES 102
              ++        F G+ +  E   +       F        +S  + + +     ++++
Sbjct: 52  ADAEFTGEKFASRFAGTWVPPEHRNRPKEEQQPFEIEKGSLRWSKFTRMAAEEMLPHVQN 111

Query: 103 YIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-------R 153
            +  F  +       F     + +  + K  LL +  K    I    +            
Sbjct: 112 KVFPFLKDINGRESSFTDHMKNAVFIISKPSLLVEAVKTIDEIFKEIEKDSREKGQAFQD 171

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           +  ++YE+L+    +        F TPR ++ L   L+           P +   + DP 
Sbjct: 172 IQGDVYEYLLSEIATAGK--NGQFRTPRHIIKLIAELV----------RPKLGHRIADPA 219

Query: 214 CGTGGFLTDAMNHV--------------------------ADCGSHHKIPPILVPHGQEL 247
           CGTGGFL  A  ++                          A    + K        G + 
Sbjct: 220 CGTGGFLLGAYQYIVTQLALNKGVKSLKPDEDGFKRTSVSAVLTENAKNILNETLWGYDF 279

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +     + +  +++  ++         +I     LSK      ++   ++NPPF      
Sbjct: 280 DSTMVRLGLMNLMMHGID-------DPHISDKDALSKTYNEPNQYDVVMANPPFTGSI-- 330

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           DK  + +               + +   +LF+ ++   L      GG A I++    LF 
Sbjct: 331 DKGDINENLNL-----------RTTKTELLFIENIYRMLRK----GGTAGIIVPQGVLFG 375

Query: 368 GRAG 371
              G
Sbjct: 376 SAKG 379


>gi|88860313|ref|ZP_01134951.1| type I restriction-modification system, M subunit, putative
           [Pseudoalteromonas tunicata D2]
 gi|88817511|gb|EAR27328.1| type I restriction-modification system, M subunit, putative
           [Pseudoalteromonas tunicata D2]
          Length = 204

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 69/183 (37%), Gaps = 11/183 (6%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
           T    +   L +++W +A+ + G    +DF   I     ++RL    +   + V ++   
Sbjct: 10  TAEKITLEELRSWLWGSADIMRGTVDSSDFKNYIFGLIFIKRLSDVFDERIADVMKEEDC 69

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESY---IASFSDNAKAIFE 116
                ++    ++      +   +   + L   + N   +++     I   + + + +  
Sbjct: 70  SATEAME---LIQSDNPEQFVPEDARWANLVKKTENVGESIDEAFAEIERQNTSLEKVLT 126

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAE 175
              F     +L    LL ++ ++F+  +L         ++ + YE+LI  F  +  +   
Sbjct: 127 AIQFGDK-DKLS-NELLMRLLRHFNKHKLGNKNLYKADLLGDAYEYLIGMFADDAGKKGG 184

Query: 176 DFM 178
           +F 
Sbjct: 185 EFY 187


>gi|46143841|ref|ZP_00133971.2| COG0286: Type I restriction-modification system methyltransferase
           subunit [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
          Length = 234

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 36/241 (14%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC----ALEPTRSAVREKYLA 61
              A L   IW+ A ++ G     DF + +L     R +       +E    +++    +
Sbjct: 5   QQRAELQRRIWQIANEVRGSVDGWDFKQYVLGTLFYRFISEHFVNYIEGGDESIKYAAWS 64

Query: 62  FGGSNIDL--ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF------------ 107
               NI L  E  +K  GY  Y  S+   + + + ++  NL + +               
Sbjct: 65  DDDENIKLGKEHVIKEKGYFIY-PSQLFENVVKNAHSNPNLNTELKEIFTAIESSATGYD 123

Query: 108 SDN-AKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIEL-HPDTVPDRVMSNIYE 160
           S+N  K +F   DF +T  RL     +K   L  + K  + ++    +     +  + YE
Sbjct: 124 SENDIKGLFA--DFDTTSNRLGNTVEDKNKRLAAVLKGVAELDFGRFEDNQIDLFGDAYE 181

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  + +   +   +F TP++V  L   L L    A+ K        +YDP CG+G  L
Sbjct: 182 FLISNYAANAGKSGGEFFTPQNVSKLIAQLALHGQKAVNK--------IYDPACGSGSLL 233

Query: 221 T 221
            
Sbjct: 234 L 234


>gi|306823032|ref|ZP_07456408.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC
           27679]
 gi|309801128|ref|ZP_07695257.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022]
 gi|304553664|gb|EFM41575.1| restriction enzyme BgcI subunit alpha [Bifidobacterium dentium ATCC
           27679]
 gi|308222017|gb|EFO78300.1| N-6 DNA Methylase [Bifidobacterium dentium JCVIHMP022]
          Length = 640

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 131/387 (33%), Gaps = 64/387 (16%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL------EKAGLLYKICKNFSG 142
           S L  +N   +  + + +     + I + F  +     L      + A  LYK   +   
Sbjct: 243 SKLKRSNIGPD--TKVQTMLGEFRIIRDSFRLNEVNETLGMTPLKKYASFLYKHVFH--- 297

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
             +   T  +  +   Y   +  +     +     +TPR +  L   +L    +      
Sbjct: 298 -AIKYQTTSEDFIGRFYGEFMS-YSGGDGQTLGIILTPRHITDLMCEILNIGPEDR---- 351

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGM 259
                 + DP CGT GFL  AM+ +    S     +       +G E++     +  + M
Sbjct: 352 ------VLDPCCGTAGFLISAMHRMLSLSSSESQRRSIKKKRLYGFEIQSNMFVIAASNM 405

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           ++R       +D + N+Q    L ++            L NPP+ +  + D         
Sbjct: 406 ILR-------KDGNSNLQCCDFLKQNPSQVQLDGATVGLMNPPYSQGSKDDP-------- 450

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                         S   + F+ HL + L      G RAA+++  S +        E   
Sbjct: 451 --------------SQYELSFVEHLLDSL----TEGARAAVIVPQSSM--TGKTKDEKTF 490

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRN 436
           +  +L+   +E I+    + F+       + + +  +  E     + I+   D +    +
Sbjct: 491 KESILKKHTLEGIITCNPNTFYGVGTNPVIAVFTAHEPHEPEHVAKFIDFRNDGYEVRPH 550

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGK 463
            G        D+++ +LD++  R    
Sbjct: 551 IGLVEGDSAKDKKQHLLDVWNGRVEAP 577


>gi|166368339|ref|YP_001660612.1| Type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
 gi|166090712|dbj|BAG05420.1| Type I restriction enzyme EcoEI M protein homolog [Microcystis
           aeruginosa NIES-843]
          Length = 677

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 98/528 (18%), Positives = 161/528 (30%), Gaps = 83/528 (15%)

Query: 44  LECALEP-----------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           L    E             +  +  + +      +  E   K +       SEY      
Sbjct: 30  LSAVFEECHNYIYANEGMLKDKIFHEMVKLIIIKLHDEKSAKQSVNFGVTASEY---KAI 86

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             N  +   S ++    + K  +  F F+    +L K   L  I      I L       
Sbjct: 87  VANKSDEFMSRLSQLFTSIKNHYRGF-FTDDTFKL-KPLTLAYIVGRLQYINLT--KTSG 142

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +    ++  + R          +F TP  +V LA  ++           P     + DP
Sbjct: 143 DIKGEAFQTFVNR---HQRGDRGEFFTPHPIVRLAVEMI----------DPKPNEKIIDP 189

Query: 213 TCGTGGFLTDAMNHVADCGS--HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
            CG+GGFL  A+NHV                  G E  P+   V ++GM+    E     
Sbjct: 190 ACGSGGFLIQAINHVRQNNPEFDIASFVQESITGIEFNPD---VALSGMIRLVFEGGTGS 246

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGR 323
           +    I   + L +D      F   L+NPPFG K + +   +        K HK+   G 
Sbjct: 247 E----IICTNALIEDEKLNNSFDVILTNPPFGNKGKVEDQKILKSYLLARKWHKSASNG- 301

Query: 324 FGPGLPKISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                P +  G    +LF+      L      GGR AI+L    L           IR W
Sbjct: 302 -WEVSPTVLAGQSPDILFIEKSIKLLR----AGGRMAIILPDGLL----QNISNGPIRHW 352

Query: 381 LLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           L     I  +V++P + F  + T I T L ++                    +       
Sbjct: 353 LRSQTKILGVVSIPPEAFVPYGTGIKTSLLVVQKL-PANHDSCFMAQIKKIGYDVKGQTI 411

Query: 439 KKRRIINDDQRRQ----IL--------DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
            KR       R +    I+          + S  NG+F++        Y     ++   +
Sbjct: 412 YKRNESGVIARTKSGLPIVDDDIDDISQSFRSFINGEFAQ---NSDCIYT----VKNTLL 464

Query: 487 SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           +  LD               L  +      +I   + +        +S
Sbjct: 465 NSRLDAEHYLP-NDQKLLEHLKSIGAKPLGEIADILREAADFRLARDS 511


>gi|254410592|ref|ZP_05024371.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182798|gb|EDX77783.1| hypothetical protein MC7420_3107 [Microcoleus chthonoplastes PCC
           7420]
          Length = 86

 Score =  118 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 8/78 (10%)

Query: 596 LESIQDYFVREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDA 655
            + I +YF+ EV PHV DA++        D    ++GYEI+FN++FY++QP R L+++  
Sbjct: 13  KQQIHEYFLEEVRPHVEDAWL--------DLSKTQIGYEISFNKYFYKHQPLRSLEEVTR 64

Query: 656 ELKGVEAQIATLLEEMAT 673
           ++  +E +   LL ++ +
Sbjct: 65  DILELEQETEGLLRQLVS 82


>gi|301299984|ref|ZP_07206209.1| putative type I restriction-modification system, M subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852375|gb|EFK80034.1| putative type I restriction-modification system, M subunit
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 463

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 166/500 (33%), Gaps = 77/500 (15%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG-----YSFYNTSEYSLSTLGST 94
           +LR+ +   + +   V++KY     +  D +  +         Y  Y  +++    L  +
Sbjct: 35  VLRKFDK--DSSILEVQKKYEESRETVQDAQFVIAPQDTYYHHYQMYKANKFEYVELVKS 92

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                    I   +   K IF+  D   + + L            F  ++   +      
Sbjct: 93  LYN------IEEKNPKLKNIFQ--DVRGSTSSLPSET-------AFEKVDSRNEVS---- 133

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
               +E  +               T +++  L T L+    + +         ++YDP  
Sbjct: 134 ----FEENLEIIKRSSGAKDNYDYTSKNIRKLITKLVGSKKEGV---------SIYDPAL 180

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GT   L          G +         +GQ++  +     +   ++  +  D     ++
Sbjct: 181 GTASLL---------LGINQAALKENRYYGQDISTQAVKTAIMNAIVNDIAEDKFEFKNE 231

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           N     TL+ +     +    +S+PP   KW  D++  +              +P  +  
Sbjct: 232 N-----TLANNW-EFGKVDIVVSDPPINMKWNVDRNLSQDRRYRDYGE-----MP--NKA 278

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              F++   +KL    +  G   + +    LF G     E  IRR LLE+  I A++ LP
Sbjct: 279 DWGFILDGIDKL----SDNGMMVVSVVQGTLFRGAK---EYNIRRKLLEDGKIRAVIQLP 331

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +    T IAT L +L     +     V  INA+  +     E     I+ +    +I+D
Sbjct: 332 GNTKLSTTIATCLLVLRKSSEDR---DVFFINASQEYEKKGLE----NILTEANVDKIVD 384

Query: 455 IYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           I+  ++  K FS +  Y         +     ++    K  L   E      KL      
Sbjct: 385 IFNEKKEEKGFSHVASYEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQ 444

Query: 514 FWLDILKPMMQQIYPYGWAE 533
                L+ +M+ +       
Sbjct: 445 T-DATLESLMKDLGLVEIDN 463


>gi|319948098|ref|ZP_08022263.1| putative type I restriction system adenine methylase [Dietzia
           cinnamea P4]
 gi|319438232|gb|EFV93187.1| putative type I restriction system adenine methylase [Dietzia
           cinnamea P4]
          Length = 649

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/239 (20%), Positives = 84/239 (35%), Gaps = 34/239 (14%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           +      +YDP CG    L +  +                  G ++     A+      +
Sbjct: 182 ANHPGGVVYDPACGFASALIELAD----------TSQFDDYIGHDINDRALAIAEVRAAL 231

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            R+           + +   L  D     R    ++ PPF  + + D    +        
Sbjct: 232 HRVPL--------QLAEADILRTDPDPELRADVVIAEPPFAMRMDVDSRLTDPRF----- 278

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F  G P  ++    +L H    L       GRA I+    PLF G     E  IR  +
Sbjct: 279 --FNFGAPPPNNADTAWLQHAIAHL----TDTGRAFIITPHGPLFRGGV---EGRIRAEI 329

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L    +E IV LP  +   T+I   LW+L  R+   +R  V  I+++D+  + ++  + 
Sbjct: 330 LRQGCVETIVGLPGGMAAYTSIPLALWVL--RRPNNKRSDVLFIDSSDVDDAEKHVARW 386


>gi|219871847|ref|YP_002476222.1| restriction enzyme subunit alpha/N-6 DNA methylase [Haemophilus
           parasuis SH0165]
 gi|219692051|gb|ACL33274.1| restriction enzyme, alpha subunit/N-6 DNA methylase [Haemophilus
           parasuis SH0165]
          Length = 637

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 145/412 (35%), Gaps = 56/412 (13%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
           +Y  F   N++ +   K  G   Y   + +L            +  ++ F    +     
Sbjct: 214 EYKNFDIDNLNGDEI-KTDGQKIYEAIQANLDRAQVKPQVKK-DKLLSQFLV-IRDTKAI 270

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
            + +ST+ +         I ++      +  +  D  +   Y   +  +     +     
Sbjct: 271 NEINSTLGKTPLKHYTQFIYEHIYKNIKYIHSAEDY-LGRFYGEFMS-YSGGDGQTLGIV 328

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHH 234
           +TPR +V L   L+                +++DP CGT GFL  AM+H+    D  +  
Sbjct: 329 LTPRHIVELFCELI----------DLKPTDSVFDPCCGTAGFLIAAMHHMLQKTDKEAEK 378

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRF 292
           +       HG EL+P    +    M++R        D   N++Q   L ++      K  
Sbjct: 379 RKIRKEQLHGIELQPYMFTIATTNMILRG-------DGKSNLEQEDFLKQNPAQLQLKGC 431

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
           +  + NPP+ +  + + +                          LF +     L      
Sbjct: 432 NVGMMNPPYSQGSKANPN--------------------------LFEISFTEHLLDSLTA 465

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G+A +++  S +        E  I+  +L+   +E ++ L  + F+       + + S 
Sbjct: 466 DGKAIVIVPQSSM--TGKSKEEQAIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFST 523

Query: 413 RKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
               E+   V+ IN   D +   ++ G    I   D+++ +LD++  R   +
Sbjct: 524 GIPHEKDKIVKFINFENDGFEVQKHIGLVETISAKDKKQHLLDVWFGRIEAE 575


>gi|256617062|ref|ZP_05473908.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
 gi|256596589|gb|EEU15765.1| type I restriction-modification system M subunit [Enterococcus
           faecalis ATCC 4200]
          Length = 241

 Score =  116 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 29/217 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  S   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           LI +F SE  + A +F TP  V  +   ++       
Sbjct: 181 LISQFASEAGKKAGEFYTPHMVSDMMAQIVTLDQKER 217


>gi|325268989|ref|ZP_08135610.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella multiformis DSM 16608]
 gi|324988610|gb|EGC20572.1| type I restriction-modification system DNA-methyltransferase
           [Prevotella multiformis DSM 16608]
          Length = 176

 Score =  116 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 15/161 (9%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA--FGG 64
           +   LAN IW   E +   +  ++   VILPFTLLRRL+C LE     + E         
Sbjct: 2   TEQELANVIWDIKEVIRNYYDDSEVEDVILPFTLLRRLDCVLEDKYDVILEALDGTPAEM 61

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSDNAKAIFEDF---- 118
               LES ++  G +F+N S  SL  L        +  ++YI  F+ N K I  +F    
Sbjct: 62  RKYKLESLMRQNGLTFFNLSGLSLRKLLNSPDQIGDAFKTYIEGFTPNVKDILANFVHED 121

Query: 119 ------DFSSTIARLEKAGLLYKICKNFSGI-ELHPDTVPD 152
                 D S   ARLE+   L+ +   F    +LHP  V +
Sbjct: 122 GDSGIVDLSKIYARLERGNKLFAVVMQFVEKADLHPSKVSN 162


>gi|254168930|ref|ZP_04875770.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|197622194|gb|EDY34769.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
          Length = 760

 Score =  116 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 149/399 (37%), Gaps = 71/399 (17%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
           Y  Y T++  +  L  T  R   +S I   SD  + +   F F  T   L        + 
Sbjct: 208 YKKYETAKEIMEDLVKTIIRELKKSKI--PSDKIENLETAFSFMKTHTTLTTDKEF--VI 263

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFG------SEVSEGAEDFMTPRDVVHLATALL 191
           K    I+   + + + + +  Y  ++ +F       +   +     +TP  +  L   L 
Sbjct: 264 KLIDDID---EKLNNFIKTYKYYDILGKFYVEFLRYANSDKKLGIILTPPHITELFCELA 320

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HKIPPILVPHGQEL 247
               D++          + D  CGTGGFL  AM  + +  S      K        G E 
Sbjct: 321 EITKDSI----------VLDNCCGTGGFLISAMKKMIEKASSNSKKIKEIKEKQIVGIEY 370

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----TLSKDLFTGKRFHYCLSNPPFGK 303
           +   +A+ +  M++         D   NI  GS    T+ K++    + +  L NPP+  
Sbjct: 371 QDHIYALAITNMIVHG-------DGKTNIYHGSCFDETIKKEVKEKFKPNVGLLNPPY-- 421

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
              K +     E K                    F+++  + LE    GG   AI+    
Sbjct: 422 ---KIEKDDTNEFK--------------------FVLNNLSMLEP---GGKCVAILPMRC 455

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
            L          E ++ LL+N  +EA++++P DLF+   + T + +++  K      KV 
Sbjct: 456 VLATDGED---YEFKKKLLKNHTLEAVMSMPDDLFYPVGVVTAVIVITAHKPHPDNKKVW 512

Query: 424 L-INATDLWTSIRNEGKKRRIINDDQRRQI-LDIYVSRE 460
                 D +  I+++G+        Q ++  +  Y+++E
Sbjct: 513 FGYFKDDGFIKIKHKGRVDYYNRWPQIKETWVSAYINKE 551


>gi|298346416|ref|YP_003719103.1| adenine-specific DNA-methyltransferase [Mobiluncus curtisii ATCC
           43063]
 gi|298236477|gb|ADI67609.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           curtisii ATCC 43063]
          Length = 646

 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 135/392 (34%), Gaps = 64/392 (16%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNF 140
             +  + S +G    ++ L   ++ FS     I +  F  +     L K   L    +  
Sbjct: 241 IRTRLTRSNVGPDAKKDKL---LSEFS-----ILKTSFRLNEKNDALGKKTPLRFYTEFL 292

Query: 141 SG---IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
                  +      +  +   Y   +  +     +     +TPR +  L   LL    D 
Sbjct: 293 YERVFKNIKYQKTSEDFIGRFYGEFMS-YSGGDGQTLGIILTPRHITDLMCELLDIKIDD 351

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAV 254
           +          + DPTCGTGGFL  AM+ +          K       HG EL+    AV
Sbjct: 352 V----------VLDPTCGTGGFLISAMHRMLSMADTDVQRKSIKKKQLHGFELQSNMFAV 401

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAV 312
             A M++R       +D + N++    L K+      K     L NPP+ +  + D +  
Sbjct: 402 AAANMILR-------KDGNSNLECCDFLRKNTAQVQLKGATVGLMNPPYSQGTKADTEQY 454

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           E                          +     L      G RAA+++  S +       
Sbjct: 455 E--------------------------LSFIEHLLDSLTVGARAAVIVPQSSM--TGKSK 486

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLW 431
            E + +  +L+   +E ++   ++ F+   +   + I +  +  ++R   + I+   D +
Sbjct: 487 AEKQFKNSILDKHTLEGVITCNSETFYGVGVNPVIAIFTANEKHDKRKVCKFIDFRDDGY 546

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
               + G        D+R+ +LD++  R    
Sbjct: 547 EVRAHVGLLEGDSAKDKRQHLLDVWFGRVEAP 578


>gi|194246615|ref|YP_002004254.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Phytoplasma mali]
 gi|193806972|emb|CAP18407.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Phytoplasma mali]
          Length = 925

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 178/513 (34%), Gaps = 95/513 (18%)

Query: 84  SEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKI 136
           SE ++  +       N       S +  F  N    F+    S       ++ + +L KI
Sbjct: 181 SEQNIKNINELYLWENFKNTPDNSLLEFFKKNIIPEFQKKYSSDVFIQTEIKNSSVLRKI 240

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE--GAEDFMTPRDVVHLATALLLDP 194
            +    ++L    +   +  + +E+ I  +     +     ++ TPR +V     ++   
Sbjct: 241 IQLLDPLKLI--DLETDIKGDAFEYFISVYSGGHGQKTDLGEYFTPRHIVKNTVKIV--- 295

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----KIPPILVPHGQELEP 249
                  +P +  T+ DP CGTGGFL +   H+    S       K        GQE+  
Sbjct: 296 -------NPKIGETILDPFCGTGGFLIEVFKHIHQQISLDDKTLLKKLQKETIFGQEIT- 347

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T  +    M++         D   NI Q  +L   +   +++   ++N PFG       
Sbjct: 348 STSRLAKMNMILAG-------DGHNNIIQCDSLK--VTNKQKYDLIITNIPFG------- 391

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                                 +    L++    N L+     GGR AI++    L N  
Sbjct: 392 ----------------------NQKEQLYIETCLNFLKK----GGRMAIIIPDGILSN-- 423

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI--- 425
                  +R+ L  N  I+ I+++P  +F   T++ T + I +++K  +    +++    
Sbjct: 424 --QKNLFLRKKLYNNFDIK-IISMPMGMFEPYTSVKTSILIANSKKENQTNSFIKIYKIE 480

Query: 426 -NATDLWTSIRNEGKKRRIINDDQRRQILDIYV---------SRENGKFSRMLDYRTFGY 475
            +   L    +     +   +     ++L IY          S  N K   +     +  
Sbjct: 481 SDGFSLDKKRKKLLTIQNDWDRYHL-EMLKIYTTIPTENNNYSFLNQKEIFVTLNNDYPK 539

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            ++  +  ++      K   A +E  I + K+S + +      L   + +I P       
Sbjct: 540 IKLSDVVNIQKGNNPPKDEKAYIEGKIPFFKVSDIAKFHIKLNLSESVHKINP------A 593

Query: 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
            K ++K  +  +L +  +         A   KD
Sbjct: 594 YKTTLKLFKKNSLLIPTTGESCKLNHRALISKD 626


>gi|187927116|ref|YP_001897603.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|309780179|ref|ZP_07674930.1| type I restriction-modification system methylation subunit
           [Ralstonia sp. 5_7_47FAA]
 gi|187724006|gb|ACD25171.1| N-6 DNA methylase [Ralstonia pickettii 12J]
 gi|308920882|gb|EFP66528.1| type I restriction-modification system methylation subunit
           [Ralstonia sp. 5_7_47FAA]
          Length = 710

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 102/335 (30%), Gaps = 76/335 (22%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           KA ++  I +               V+   YE  +R      ++     +TPR +   A 
Sbjct: 270 KAAIVRTIQQLLDLNIKSAMNSGTDVLGKFYEVFLRYGN--GAKEIGIVLTPRHITRFAV 327

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQE 246
             +                 ++DP CGTGGFL  A +HV         +        G E
Sbjct: 328 DAVGV----------SPSDLVFDPACGTGGFLVAAFDHVRAKTKGAPLERFKRFGLFGIE 377

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-------SKDLFTGKRF------- 292
            E    A+ +  M+ R        D   NI +           + D     ++       
Sbjct: 378 QESSVAALAIVNMIFRG-------DGKNNIVEADCFNRFLTRSTNDGHATAQYVKAKPKL 430

Query: 293 -----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKL 346
                     NPPF  K   + +            RF    L  ++DG++L        +
Sbjct: 431 GEEPITRVFMNPPFALKKSDEHEW-----------RFVETALKSMADGALL---LAIVPM 476

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
            +   GG   A                    RR LLE+  + A+V+LP +LF+   +   
Sbjct: 477 SVVSEGGSAGA-------------------WRRPLLEHHSVVAVVSLPEELFYPVAVQAV 517

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
             IL           V    A  +    R    KR
Sbjct: 518 AIILRKGVPHRAEQPVL--WARVVNDGYRKSKGKR 550


>gi|282860339|ref|ZP_06269407.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
 gi|282586837|gb|EFB92074.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
          Length = 811

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/335 (19%), Positives = 112/335 (33%), Gaps = 54/335 (16%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           ++   G L K+ +             D +   +YE  ++   S +    + + TPR++V 
Sbjct: 259 KIIDHGCLLKVIEELE--PWSFIGTGDDIKGAVYEIFLK---STLRGDFDQYFTPREIVD 313

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------ADCGSHH 234
                            P +   + DP CG+GGFL  +  +V            D     
Sbjct: 314 FIVKY----------ADPKIGDKILDPACGSGGFLIQSFLYVNQKIIDTPCSELDRKLKF 363

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G E + + H +    +++         D   NI QG +LS        F+ 
Sbjct: 364 NELIDKCLWGGEADEDLHVLAKINLIMHG-------DGYNNIYQGDSLSNKKLPNDTFNL 416

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L+NPPF   +      +  +++ G+  R    L       +LF+      L      GG
Sbjct: 417 ILTNPPFTIPYT--FKDILNKYEMGQ-NRESQEL------DILFVEKCIRAL--DAKAGG 465

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411
              IVL    L            R+WLL    I   ++LP   F         T +  L 
Sbjct: 466 EMYIVLPEGLLN----LPYYQNFRKWLLGKCYITLSISLPEGAFIPFGKSVSKTAILGLR 521

Query: 412 NRKTE--ERRGKVQLINATDL-WTSIRNEGKKRRI 443
            +  +   +   V L  A ++ +   ++  KK   
Sbjct: 522 KKNQQGSNKPDFVFLGTAKEVGYEVGKSVYKKINK 556


>gi|15668302|ref|NP_247097.1| type I restriction-modification enzyme 2 subunit M
           [Methanocaldococcus jannaschii DSM 2661]
 gi|2495819|sp|Q57596|Y132_METJA RecName: Full=Uncharacterized protein MJ0132
 gi|1592267|gb|AAB98113.1| type I restriction-modification enzyme 2, M subunit
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 220

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           G P        ++  +            +  IVL S  LF G     E +IR+ ++E DL
Sbjct: 26  GYPPKQSADWAWVQLMLYFARK------KVGIVLDSGALFRGGK---EKKIRKEIVEKDL 76

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           IEAI+ LP  LF+       + IL+  K EER+GK+  INA+  +       ++   + +
Sbjct: 77  IEAIILLPEKLFYNVTAPGIVMILNKNKPEERKGKILFINASLEFEKHPEV-RRLNRLGE 135

Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRT 472
           +   +I+D+Y + E+ + FSR++D   
Sbjct: 136 ENIDKIVDVYENWEDIEGFSRVVDLEE 162


>gi|159026847|emb|CAO89098.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 677

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 127/375 (33%), Gaps = 51/375 (13%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           +  +  + +      +  E   K +       SEY        N  +     ++    + 
Sbjct: 49  KDKIFHEMVKLIIIKLHDEKSAKQSVNFGVTASEY---KAIVANKSDEFMLRLSQLFTSI 105

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           K  +  F F+    +L K   L  I      I L        +    ++  + R      
Sbjct: 106 KNHYRGF-FTDETFKL-KPLTLAYIVGRLQYINLT--KTSGDIKGEAFQTFVNR---HQR 158

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +F TP  +V LA  ++           P     + DP CG+GGFL  A+NHV    
Sbjct: 159 GDRGEFFTPHPIVRLAVEMI----------DPKPNEKIIDPACGSGGFLIQAINHVRQNN 208

Query: 232 SHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                         G E  P+   V ++GM+    E     +    I   + L +D    
Sbjct: 209 PEFNIATFVQESITGIEFNPD---VALSGMIRLVFEGGTGSE----IICTNALIEDEKLN 261

Query: 290 KRFHYCLSNPPFGKKWEKDKDAV-------EKEHKNGELGRFGPGLPKISDGS---MLFL 339
             F   L+NPPFG K + +   +        K HK+          P I  G    +LF+
Sbjct: 262 NSFDVILTNPPFGNKGKVEDQKILQSYLLARKWHKSASNS--WEASPTILAGQSPDILFI 319

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
                 L      GGR AIVL    L           IR WL     I  +V++P + F 
Sbjct: 320 EKSIKLLR----AGGRMAIVLPDGLL----QNISNGPIRHWLRSQTKILGVVSIPPEAFV 371

Query: 399 -FRTNIATYLWILSN 412
            + T I T L ++  
Sbjct: 372 PYGTGIKTSLLVVQK 386


>gi|323441376|gb|EGA99035.1| hypothetical protein SAO46_2663 [Staphylococcus aureus O46]
          Length = 630

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/428 (16%), Positives = 142/428 (33%), Gaps = 66/428 (15%)

Query: 92  GSTNTRNNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK--AGLLYKICKNFS-GI 143
                 N ++ Y+   + + +      I E F F     +L +  + L     K FS  +
Sbjct: 232 DGDKIYNAVQMYLKQ-NADIRPAKNGEILESFMFIKNDLKLNRIHSQLNMTPLKYFSVKL 290

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +         ++ + Y   + ++G          +TPR + +L   L+            
Sbjct: 291 KNKFVHNDMDILGSFYGEFV-KYGGNDGNALGIVLTPRHITNLMCELISINHTDF----- 344

Query: 204 GMIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                + DP CG+GGFL  AMN    +AD     K       HG EL           M+
Sbjct: 345 -----VLDPCCGSGGFLVTAMNKMFNLADTKEEIKSIKQNQIHGIELTQSLFTTATTNMI 399

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +R        D   N+++      D  +   + +  L NPP+ +   K+   + +     
Sbjct: 400 LRG-------DGKSNLRRDDVFHVDKEYYKDKINKILLNPPYSQAKTKNLSHLSEIS--- 449

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                             F+      ++     GG+ A ++  S +        +   +R
Sbjct: 450 ------------------FIKESLEYMKT----GGKLAAIIPQSTMI--GKTKNDKNYKR 485

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEG 438
            +LE   +E ++ L  D F+   +   + I +    ++ + +V  +N   D +   ++ G
Sbjct: 486 EILEKHSLETVITLNKDTFYGVGVNPCIAIFTAGIPQDEKKRVNFVNFTDDGYVVRKHIG 545

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP-LRMSFILDKTGLAR 497
                    ++  +L++    E+       D        I      L   F  ++     
Sbjct: 546 LVGDGTEKSKKEYLLNVLNDYEDA------DTNFLVKSPITWEDEWLHSFFYYNEEIPTD 599

Query: 498 LEADITWR 505
            + + T  
Sbjct: 600 EDFEKTIA 607


>gi|229148006|ref|ZP_04276345.1| N-6 DNA methylase [Bacillus cereus BDRD-ST24]
 gi|228635431|gb|EEK91922.1| N-6 DNA methylase [Bacillus cereus BDRD-ST24]
          Length = 1009

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 106/579 (18%), Positives = 194/579 (33%), Gaps = 99/579 (17%)

Query: 33  KVILPFTLLRRLECAL--EPTRSAVR-------EKYLAFGGSNIDLESFVKVAGYSFYNT 83
           + I+   LLR  E  L  +P    +R       E  L +  + ID  +  +    +F+  
Sbjct: 12  EYIIELLLLRIFEVKLKRDPDFKELRNLFVEKNETKLFYYLNTIDSRTITEELNKNFFPF 71

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
               L+       + NL   +       + +F + +F++ +     +G L +I +  S +
Sbjct: 72  YGNILNEAR-KVFQGNLSIKVQDQLVLIQEVFRNSNFTNNVQ----SGNLEEIIQAVSDL 126

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +     +   ++ +  E  +    +  ++    F TP  + H    L+           P
Sbjct: 127 D-EERLLNTDLLGDAIESALSE--TGGTKDIGLFRTPDHIRHFMLGLV----------EP 173

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP------------------------- 238
            +  T++DP CGTGGFL D    V +     +  P                         
Sbjct: 174 TINDTIFDPACGTGGFLFDGFEFVMESILKEEKWPGTKAHPELQEWFKGYFNKTTVKFPS 233

Query: 239 --------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG 289
                       +G E       +      IR L          NIQQG +L+  D  + 
Sbjct: 234 DEEALNFYRSGIYGIEYLGVIRKMAAVNFYIRGLNPH-------NIQQGDSLAMFDQSSI 286

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           K     L+NPPFG + +++      E  + E           S+ + LF+  + + L+  
Sbjct: 287 KSKSVVLANPPFGAERDQEAYPNVWEDYSKE-----------SETTTLFVKLMLDSLKD- 334

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406
              GG+ A+V+S   L           +R+ +LE   +  ++ LP  +F         T 
Sbjct: 335 ---GGKCAVVVSEGFL--TWEQGSAKALRKLILEEAKLIGVIGLPQGVFVSKTGIGPKTS 389

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +      K  E     Q+ N  D +T     G  R +    Q  + LDIY +      + 
Sbjct: 390 ILFFEKGKPTENVWFYQVTN--DGYTK----GTNRTVTKGSQLIEALDIYHNYIKKGLTP 443

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQ--SFWLDILKPMMQ 524
                +F    + V R   +   + +     +   +  +K     +        LK    
Sbjct: 444 KESPNSFV---VPVDRINTLDPRIKEKIRQEITLTMQEKKDKEKTKLIKDIDAKLKVSKV 500

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
               Y           KS     +  K  K+ + +F +A
Sbjct: 501 DSNEYDQKIRQFNNVWKSKIKNEIAKKIDKTHVYSFNSA 539


>gi|134097473|ref|YP_001103134.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910096|emb|CAM00209.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 467

 Score =  114 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 111/338 (32%), Gaps = 56/338 (16%)

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L  D F   R    L NPPFG +     D            R+  GLP  S+  + 
Sbjct: 18  FGDSLRADAFPDTRVDTVLCNPPFGVRDWGHDD-------LAYDPRWVYGLPPRSESELA 70

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    LE     GG A +++                +R  L+    + A++ LP   
Sbjct: 71  WVQHCLAHLEP----GGLAVVLMPPGA----AERPSGRRVRAELIRQGALRAVIGLPPGA 122

Query: 398 FFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
               +++ ++W+L+        GK V  ++A+    S                ++I++++
Sbjct: 123 APPLHLSLHIWVLTCPDEALATGKSVLFVDASSGSVSD---------------QRIVELW 167

Query: 457 VSRENGK--------FSRMLDYRTF--GYRRIKVLRPLRMSFILDKTGLARLEADI---- 502
              +  +         ++ L           +   R + +   +     A L  ++    
Sbjct: 168 RDFDEAEDRFEAVPDVAQRLSIVDLLDATVDVTPARRVHIRTAISPNEQAELAEELRKRL 227

Query: 503 --TWRKLSPLHQSFWLDILKPMM---------QQIYPYGWAESFVKESIKSNEAKTLKVK 551
                +L+ L  +  +D  +P            +  P  W  + V + ++       +  
Sbjct: 228 GRACDELAQLASTPTIDSKQPSDTPMTTVWSVSEGEPMTWRTATVADLLRGGALALHRAT 287

Query: 552 ASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
            +              D     ++D+ GE  P  +L +
Sbjct: 288 PTHRTGSTRNADVASNDVAILTLSDLRGEPRPSGSLRD 325


>gi|291545711|emb|CBL18819.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 267

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 101/293 (34%), Gaps = 35/293 (11%)

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             + HG +++     +    M+   +E       +  I+   +LS       ++   L+N
Sbjct: 2   NHMFHGYDMDRTMLRIGAMNMMTHGIE-------NPYIEYRDSLSDQNADKDQYSLVLAN 54

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF    + +  + +              + K     +LFL      ++     GGR A 
Sbjct: 55  PPFKGSLDAESVSGDL-----------LKVCKTKKTELLFLALFLRIMK----IGGRCAC 99

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++    LF   +      IR+ ++EN  +EA++++P+ +F     ++T + I +      
Sbjct: 100 IVPDGVLF--GSSRAHKSIRKEIVENQRLEAVISMPSGVFKPYAGVSTAILIFTKT-EHG 156

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS------RENGKFSRMLDYR 471
              +V   +   +     +   KR  + ++    I++ + +      R+    S M+  +
Sbjct: 157 GTDQVWFYD---MNADGFSLDDKRTPVTENDIPDIIERFKNLDKEAERKRTDQSFMVPKK 213

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                   +                     +   +   L     +D L+ ++ 
Sbjct: 214 DIVENDYDLSINKYKEIEYTPVEYPPTSEIMANIRELELEIGKEMDELERLLG 266


>gi|113460576|ref|YP_718640.1| restriction enzyme subunit alpha [Haemophilus somnus 129PT]
 gi|112822619|gb|ABI24708.1| site-specific DNA-methyltransferase (adenine-specific) [Haemophilus
           somnus 129PT]
          Length = 656

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 123/391 (31%), Gaps = 73/391 (18%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAK-----------AIFEDFDFSSTIARL-EKAGL 132
            + +S L     R +      +  DN K            +   F+      ++ EK   
Sbjct: 219 NFDISDLIGDKIRTDGSKIYKAIEDNLKRANVSPEVKRDKLLNQFNIIKDNNKINEKNSN 278

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-------SEGAEDFMTPRDVVH 185
           L K    +    L+     +   ++  E  I RF  E         +     +TPR +  
Sbjct: 279 LGKTPLRYFTEVLYNGIFTNIKYNSSTEDYIGRFYGEFMSYSGGDGQSLGIILTPRHITD 338

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVP 242
           L   LL                 + DP CGT GFL  AM+H+                  
Sbjct: 339 LFCELLDI----------QPTDKVLDPCCGTAGFLIAAMHHMLSKTEDENEQIEIRKNRL 388

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPP 300
            G EL+     +    M++R        D   N++    L+++      K     + NPP
Sbjct: 389 FGIELQDYMFTIATTNMILRG-------DGKSNLENQDFLAQNPSKIQLKGCTVGMMNPP 441

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           + +  +++ +  E                              N L      G + A+++
Sbjct: 442 YSQGSKQNSELYEINF--------------------------VNHLLESLVEGAKVAVIV 475

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             S  F G+    E  ++  +L+   +E ++ L  + F+       + + +      +  
Sbjct: 476 PQST-FTGKTKD-EQNLKTKILKKHTLEGVITLNKNTFYGVGTNPCIGVFTAGIPHSKTK 533

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           K + IN    + +      K   + DD   +
Sbjct: 534 KAKFIN----FENDGYIVSKHIGLIDDGSAK 560


>gi|316985077|gb|EFV64030.1| N-6 DNA Methylase family protein [Neisseria meningitidis H44/76]
          Length = 157

 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 23/143 (16%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+      G+ AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR------------GKVQLINATDLWTSIR 435
           + I+ LP +LF+ T I   + ++     +  +            G V +I+A+  +    
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFI--- 127

Query: 436 NEGKKRRIINDDQRRQILDIYVS 458
            +G K R + +    +I+D + +
Sbjct: 128 KDGNKNR-LREQDIHKIIDTFTN 149


>gi|307128877|ref|YP_003880893.1| type I restriction-modification system methyltransferase subunit
           [Dickeya dadantii 3937]
 gi|306526406|gb|ADM96336.1| Type I restriction-modification system methyltransferase subunit
           [Dickeya dadantii 3937]
          Length = 142

 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 63/113 (55%), Positives = 83/113 (73%), Gaps = 2/113 (1%)

Query: 1   MT-EFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY 59
           M  +    +A L++ IW+ A+DLWGDFKHTDF ++ILPF LLRR+EC LEPTR  VR+ Y
Sbjct: 1   MNLQDKEQSAKLSSAIWRMADDLWGDFKHTDFARIILPFLLLRRIECVLEPTREEVRKFY 60

Query: 60  LAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           LA   S IDL   + +VA +SFYNTSEYSL TLG+++T +NLE YI+ ++ N 
Sbjct: 61  LAEKQSGIDLGLVLPEVARFSFYNTSEYSLETLGASDTGDNLELYISQWAMNL 113


>gi|330467457|ref|YP_004405200.1| hypothetical protein VAB18032_17490 [Verrucosispora maris
           AB-18-032]
 gi|328810428|gb|AEB44600.1| hypothetical protein VAB18032_17490 [Verrucosispora maris
           AB-18-032]
          Length = 683

 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 96/274 (35%), Gaps = 36/274 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E+L  ++ S     +    TP  V  +  A+             G+    +D T GTG
Sbjct: 143 AFEYLHSQYVSSAQSVSGLAGTPESVADVMVAVA------------GVGTHTFDFTSGTG 190

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKN 275
             L  A +     G             QE+ P+   +    +    L +           
Sbjct: 191 SILRMAADRALRSG------ATTRCFAQEINPQYALITSLRLWFVHLRAQQAGHHTPPPV 244

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +  G +L  D     R    ++N PFG              +     R+  GLP  ++  
Sbjct: 245 VHVGDSLLADALPDLRADVVVANFPFGIHDWGHD-------RLAYDPRWTYGLPPRTEPE 297

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ H    L       G A +++  +             IR  L+    + AI+ALP 
Sbjct: 298 LAWVQHALAHLSP----NGTAVVLMPPATASRPAGR----RIRAELIRRHALRAIIALPA 349

Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINAT 428
            L   TNI  ++W+L+    +  R G++  ++AT
Sbjct: 350 GLMLPTNIGLHIWVLAQPDPQHPRVGELLFVDAT 383


>gi|167760902|ref|ZP_02433029.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704]
 gi|167661505|gb|EDS05635.1| hypothetical protein CLOSCI_03290 [Clostridium scindens ATCC 35704]
          Length = 304

 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 102/277 (36%), Gaps = 38/277 (13%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC--GSHHKIPPILVPHGQELEPETHAVCVAGM 259
           +P +   + D  CGTGGFL  A+ H+         +        G E +P  H +C   +
Sbjct: 6   NPQLGEQVLDFACGTGGFLVCALEHLRKQVRNIDDEAQLQNSILGVEKKPLPHMLCTTNL 65

Query: 260 LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           ++  ++       +  I+  ++L    K++    +    L+NPPFG     ++D +E   
Sbjct: 66  ILHNID-------NPQIRHDNSLGYPIKNIKPKDKVDIILTNPPFGG---IEEDGIEDNF 115

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                        K  + + LFL+ +  KL+      GRAAIVL    LF     +    
Sbjct: 116 PANY---------KTKETADLFLVLMMYKLKQT----GRAAIVLPDGFLFGEGVKTA--- 159

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           I+  LL    +  IV LP  +F   T I T L  L          ++             
Sbjct: 160 IKEKLLNEFNLHTIVRLPNGVFSPYTGINTNLLFLERG----TTQEIWFYEHQLPEGYKN 215

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
               K   +++ +  +    + +R+    +  +    
Sbjct: 216 YTKTKPIKLDEFEVEK--AWWNARKETDCAWRVSIDE 250


>gi|255066319|ref|ZP_05318174.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256]
 gi|255049529|gb|EET44993.1| restriction enzyme BgcI subunit alpha [Neisseria sicca ATCC 29256]
          Length = 637

 Score =  113 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 120/334 (35%), Gaps = 53/334 (15%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I  +      +  +  D  +   Y   +  +     +     +TPR +V L   L+    
Sbjct: 289 IYDHIYKNIKYIHSAEDY-LGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELIDI-- 344

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETH 252
                       +++DP CGT GFL  AM+H+    D  +  +       HG EL+P   
Sbjct: 345 --------KPTDSVFDPCCGTAGFLIAAMHHMLQKTDKEAEKRNIRKNQLHGIELQPYMF 396

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKD 310
            +    M++R        D   N++Q   L ++      K  +  + NPP+ +  + + +
Sbjct: 397 TIATTNMILRG-------DGKSNLEQEDFLKQNPAQLQLKGCNIGMMNPPYSQGSKANPN 449

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                                     L+ +     L       G+A +++  S +     
Sbjct: 450 --------------------------LYEISFTEHLLDSLTEDGKAIVIVPQSSM--TGK 481

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATD 429
              E  I+  +L+   +E ++ L  + F+       + + S     ++   V+ IN   D
Sbjct: 482 TKEEQSIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFSTGIPHDKDKTVKFINFEND 541

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +   ++ G    I   D+++ +LD++  R   +
Sbjct: 542 GFEVQKHIGLVETISAKDKKQHLLDVWFGRIQAE 575


>gi|325677597|ref|ZP_08157254.1| hypothetical protein CUS_4322 [Ruminococcus albus 8]
 gi|324110707|gb|EGC04866.1| hypothetical protein CUS_4322 [Ruminococcus albus 8]
          Length = 113

 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 4/98 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++  NFIW  A  L G ++   +  VI+P  ++RR ECALE T+ AV E+Y         
Sbjct: 18  STEVNFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYK--KNPAYP 75

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYI 104
            ++  +V+GY F+NTSEY+L+ L     +   N  +YI
Sbjct: 76  AKAMCRVSGYQFFNTSEYTLAELVNDPDHLAANFRNYI 113


>gi|289423038|ref|ZP_06424856.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius
           653-L]
 gi|289156549|gb|EFD05196.1| type I restriction enzyme, M protein [Peptostreptococcus anaerobius
           653-L]
          Length = 270

 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 80/249 (32%), Gaps = 46/249 (18%)

Query: 1   MTEFTGSAAS---LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------- 48
           M+           L   IW  A++L G     DF   IL     R +   +         
Sbjct: 1   MSIDNKKEQERDELHRAIWAIADELRGAVDGWDFKNYILGTMFYRYISENITNYINEGEI 60

Query: 49  -----EPTRSAVREKYLAFGGSNIDLES-FVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
                +   + + ++        +  E  F  +    F N          + N    LE 
Sbjct: 61  EAGNSDFDFAKISDEMAKEAREGLVEEKGFFILPSELFCNV---RAKAKDNENLNETLEK 117

Query: 103 YIASFSDNAK---------AIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP- 147
                 ++AK          +F+DFD +S   +L     ++   L K+    + + L   
Sbjct: 118 VFRHIEESAKGSESESDFAGLFDDFDVNS--NKLGSTVAKRNEKLCKLLDGVADMNLGNV 175

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    + YE+L+  + S   +   +F TP DV  L T L       + K       
Sbjct: 176 KDHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRLGTVGKTEINK------- 228

Query: 208 TLYDPTCGT 216
            +YDP CG 
Sbjct: 229 -VYDPACGF 236


>gi|91794617|ref|YP_564268.1| N-6 DNA methylase [Shewanella denitrificans OS217]
 gi|91716619|gb|ABE56545.1| N-6 DNA methylase [Shewanella denitrificans OS217]
          Length = 630

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 144/449 (32%), Gaps = 75/449 (16%)

Query: 42  RRLECALEPTRS---------AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           +R    L   +           + E+      S   +    +    SF   S   +    
Sbjct: 176 KRHSDLLAFAKDLHELIWTAAKISEEDKPLLVSGTLIALMNQPFLNSFQYYSPEDMPRKW 235

Query: 93  STNTRNNLESY-IASFSDNAKA-----IFEDFDF---SSTIARLEKAGLLYKICKNFSGI 143
               ++ L+   I     +        +    +     + IA+    G+LY++ K  +  
Sbjct: 236 LEAIKDELDKADIPKAKKDTMRQPYATVAGQPNLGKPDAKIAKKYPKGVLYEVIKEINDN 295

Query: 144 ELHPDT--VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                +      V+ + Y   + ++ +   +     +TPR V  L   +           
Sbjct: 296 VWPFISVYHNFDVVGHFYGEFL-KYTAGDKKALGIVLTPRHVTELFCDIANITKKD---- 350

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAG 258
                 T+ D   GTGGFL  AM+ +       +           G E  P+  A+  + 
Sbjct: 351 ------TVIDICAGTGGFLISAMHRMLKTAMTEEERLDIKKNRLIGIENSPKMFALAASN 404

Query: 259 MLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++R                +++  T+       KR +  L NPP+ +            
Sbjct: 405 MILRGDGKANLHQSSCFEPTLKRAITVPDPALGVKRPNIGLLNPPYAQS----------- 453

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                           SD  +  L  +   L+L   GG   AI+  S  +          
Sbjct: 454 ---------------KSDAELHELYFVKEMLDLLEKGGTGVAIIPVSCVIMPN------- 491

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDLWTS 433
           +++  +L+   ++A++++P++LF+     T + +    K  +    K        D +  
Sbjct: 492 KVKHEILQKHTLKAVMSMPSELFYPVGTVTCIVVFEAHKPHKETNKKTWFGYWREDGYVK 551

Query: 434 IRNEGK--KRRIINDDQRRQILDIYVSRE 460
            ++ G+        D + R + + Y + E
Sbjct: 552 TKHMGRIDLNHEWQDIKSRWL-EAYSNNE 579


>gi|225076445|ref|ZP_03719644.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens
           NRL30031/H210]
 gi|224952124|gb|EEG33333.1| hypothetical protein NEIFLAOT_01491 [Neisseria flavescens
           NRL30031/H210]
          Length = 637

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 120/334 (35%), Gaps = 53/334 (15%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I  +      +  +  D  +   Y   +  +     +     +TPR +V L   L+    
Sbjct: 289 IYDHIYKNIKYIHSAEDY-LGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELIDI-- 344

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETH 252
                       +++DP CGT GFL  AM+H+    D  +  +       HG EL+P   
Sbjct: 345 --------KPTDSVFDPCCGTAGFLIAAMHHMLQKTDKEAEKRNIRKNQLHGIELQPYMF 396

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKD 310
            +    M++R        D   N++Q   L ++      K  +  + NPP+ +  + + +
Sbjct: 397 TIATTNMILRG-------DGKSNLEQEDFLKQNPAQIQLKGCNIGMMNPPYSQGSKANPN 449

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                                     L+ +     L       G+A +++  S +     
Sbjct: 450 --------------------------LYEISFTEHLLDSITADGKAIVIVPQSSM--TGK 481

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATD 429
              E  I+  +L+   +E ++ L  + F+       + + S     ++   V+ IN   D
Sbjct: 482 TKEEQAIKENILKKHTLEGVITLNKNTFYGVGTNPCIAVFSTGIPHDKDKTVKFINFEND 541

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +   ++ G    +   D+++ +LD++  R   +
Sbjct: 542 GFEVQKHIGLVETVSAKDKKQHLLDVWFGRIQAE 575


>gi|269929053|ref|YP_003321374.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
 gi|269788410|gb|ACZ40552.1| N-6 DNA methylase [Sphaerobacter thermophilus DSM 20745]
          Length = 752

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 101/330 (30%), Gaps = 62/330 (18%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           +++      + +   +     +  +YE     F          + TPR +  +   L   
Sbjct: 228 WRVLSTLEKLNVATSSFAHDYLGQLYETF---FRYTGGNTIGQYFTPRHIARMMADLC-- 282

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----GSHHKIPPILVPHGQELEP 249
                          + DP CGTGGFL  AM    D                  G E EP
Sbjct: 283 --------ESTPSDVVIDPACGTGGFLIAAMQRAYDQSSLRYEDAIELVREKLIGYESEP 334

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            T A+ VA ML+R        D    I++    +   +        L NPPF        
Sbjct: 335 VTAALAVANMLLRG-------DGKTGIRKEDCFTATDYPVNACDIALMNPPF-------- 379

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                 HK  +       +P               +        GR A++L +S      
Sbjct: 380 -----PHKKTD-------VPP---------ERFVERALEALRLRGRIAVILPTSLTVKKE 418

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLI--- 425
                   R+ +L ++ +  +V LP +LF    +  T + +L      + R +   +   
Sbjct: 419 NAG----WRKQILTHNTLLGVVQLPDELFQPYASATTTVVLLEKGIPHDARRETAFVRLH 474

Query: 426 -NATDLWTSIRNEGKKRRIINDDQRRQILD 454
            +   L   IR      R    D    I++
Sbjct: 475 YDGLTLKKGIRVPRSDGRNQVPDTVDAIVN 504


>gi|291560647|emb|CBL39447.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 410

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 129/396 (32%), Gaps = 47/396 (11%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           KI +     +        +         I +      +  +   TP  +  +   ++ D 
Sbjct: 22  KILEYLLSDQAADKIQEVKDEGYTEIRDIFQEEQGDRKNLKQDFTPDCICQIVAEIMKDG 81

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH---GQELEPET 251
           D               D   GTG     A        + ++     +P       +   T
Sbjct: 82  D-------------NIDMCSGTGALSKWANKTRGIKINEYEYSERTIPFALLDACVNGMT 128

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
             +  A  L  ++      +    I     +  +     ++   + NPP+  K+      
Sbjct: 129 GMISRADCLRSQIFESYALEQCGEISIPRQV--ERQNPDQYKNIIMNPPYSMKFP----- 181

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                   +    G  +P  S     F++     L+      GR   VL    LF G   
Sbjct: 182 -----DTDDYEILGWKIP-KSKADFGFILRGVQHLKED----GRQIAVLPHGILFRGAQ- 230

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             E +IRRWL+EN +I A++ +P  LF  T+I  +L ++     E     V  I+A+  +
Sbjct: 231 --EGKIRRWLIENHMISAVIGVPDKLFLNTSIPVFLLVI-----EHNSKDVLFIDASKEF 283

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFIL 490
                    +  + +    ++++ +++R+  + +S +  Y         +  P R     
Sbjct: 284 IK----KAAQNDMEEKYIEKVVNTFLNRKEVEKYSYIASYEEIEENDFNLNIP-RYVDTF 338

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           ++  L  +   +   K     ++     L  M+  +
Sbjct: 339 EEEPLPDVRQILKDLKQIDEEETKIKADLYSMLNDL 374


>gi|37680386|ref|NP_934995.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
 gi|37199133|dbj|BAC94966.1| type I restriction-modification system methyltransferase subunit
           [Vibrio vulnificus YJ016]
          Length = 638

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 148/453 (32%), Gaps = 66/453 (14%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           FS N     E+        R+    +L  +      ++L      D        HL+   
Sbjct: 99  FSRNNWEKIENI-LDQIPFRIRSTKILDLVIHRLEELDLSEGIEIDFD------HLLLNM 151

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +    +  + +PR ++     +L          +P  + T+YDP  GTGG   +A  H
Sbjct: 152 VKDSGS-SGAYYSPRPLIKAMVRVL----------NPKPLATVYDPAMGTGGVFVEAKKH 200

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                        L   G +L P  H +    +L+  ++               +L    
Sbjct: 201 AKGKSC----FNGLSFIGNDLSPFAHLIGALNLLLNDIDISGVSIS-------DSLLD-- 247

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              +++ + +S  PFG   + ++    + + +G  G              +FL H  +KL
Sbjct: 248 RDCQQYDFVISGVPFG---KVNELTKYEYYYHGYSGSLEA----------MFLKHTMDKL 294

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIAT 405
                 GGRAAIV+    LF   +   E  ++R LL    + A+++LP       + +  
Sbjct: 295 AK----GGRAAIVIPDGILFGNASHLDE--LKRQLLTQFNLHAVLSLPKGTLAPYSGVKV 348

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
            +    N  +E+    +                 K   I D        +Y  RE  + S
Sbjct: 349 SVLFFDNTVSEK---DIWFYELR-----TNKPLSKVNSITDSDFEDFTSLYERREVSENS 400

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            ++   +    +      L +SF L K     + +       L    Q   +  ++    
Sbjct: 401 CLISKESLLQDK-----TLNLSFSLPKTEAGLKFDKQEMIASLK-SEQLSLVTSIENHFD 454

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
            +      +   +  +K         K +KS +
Sbjct: 455 YMSLNLECKYIHQVKLKDICKLRSGDKLNKSEV 487


>gi|330997668|ref|ZP_08321513.1| N-6 DNA Methylase [Paraprevotella xylaniphila YIT 11841]
 gi|329570196|gb|EGG51936.1| N-6 DNA Methylase [Paraprevotella xylaniphila YIT 11841]
          Length = 667

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 122/383 (31%), Gaps = 83/383 (21%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F   I +L+K  + Y + +    I L             ++  +  F          F T
Sbjct: 282 FKDDI-KLDKHKI-YTVVQYLQDINL--SRTDLDAKGVAFQSFMGEF---FRGDFGQFFT 334

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----- 234
           P  +V      +    D            + D +CG+GGFL  A+  + D  +       
Sbjct: 335 PNPIVEFIVNSINIDKD----------WKVLDTSCGSGGFLLYALKTIRDEANEIYGENA 384

Query: 235 ---------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                             G E+  +   V    M+I         D   NI     L  +
Sbjct: 385 ESSSWKDYWHEFAEKHLFGIEINEQISRVAKMNMIIH-------DDGHTNIITNDGLKNN 437

Query: 286 ----------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-- 333
                      F    F   ++NPPFG   + D+    KE++  E      G+ +I D  
Sbjct: 438 KTLEIENRNLKFQDGTFDLIMTNPPFGSTIKADEVNYYKEYELFEKN---LGITEIKDRI 494

Query: 334 --------------GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           +LFL      L       G  AIV+    L      S    +R 
Sbjct: 495 ADDNNKKKWRASQSTEILFLERCYKYLN---EENGYLAIVVPDGIL----TNSTSQYVRD 547

Query: 380 WLLENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           WL+E   I A+V+LP   F      + + +  L          KV           ++  
Sbjct: 548 WLVEKFKILAVVSLPQHTFSHVKAGVKSSILFLKKHP------KVVTQKFEQTLKDVKAL 601

Query: 438 GKKRRIINDDQR-RQILDIYVSR 459
            +K + ++ +QR  ++LD+Y  R
Sbjct: 602 VQKEKDLDKEQRTERMLDLYKER 624


>gi|153871780|ref|ZP_02000864.1| type I restriction enzyme StySPI M protein [Beggiatoa sp. PS]
 gi|152071755|gb|EDN69137.1| type I restriction enzyme StySPI M protein [Beggiatoa sp. PS]
          Length = 469

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 113/384 (29%), Gaps = 84/384 (21%)

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            S+   E  ++ +G   YN  +  +  L   +     + YIA    +A   F        
Sbjct: 51  PSDYRWELLIQKSGIEQYNYYQEVIKILSQAS-----DPYIAGLYAHADTFF-------- 97

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
               +    L ++    S I +  +      +  +YE L+ R              PR +
Sbjct: 98  ----KTPEQLAQVITTLSTINIPIE-----DLGEVYEILLERCAYLDGGRL--HQVPRSL 146

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---------- 233
           V L                P     + DP  GT  F+     ++                
Sbjct: 147 VDLMV----------ILTQPQPGELIQDPLAGTASFVVATNEYMQVINDEFSESSSQGPP 196

Query: 234 ----HKIPPILVPHGQ----ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                               E +   H + +   L+ R+           ++ G +L  +
Sbjct: 197 KNQTQNQNKFCTLETNFLAVEPDLIRHRLALMNCLLHRINHSQHLP----VRWGDSLLSN 252

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           L    +    LS   F     ++                        D S+  L H+   
Sbjct: 253 LEKWPQADVILSILVFASDLSEELG--------------------KHDASLALLQHIYQT 292

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+     GGRAA++L    L    A     ++R  LL+  ++  ++ LP  +F+   +  
Sbjct: 293 LKP----GGRAAVILPDKLL---NAVGPAQQVRGTLLDTCVLHTVLRLPHGIFYPYKVPA 345

Query: 406 YLWIL-SNRKTEERRGKVQLINAT 428
           +L         +E+   V   +  
Sbjct: 346 HLLFFWRGHTADEKTENVWFYDLR 369


>gi|72160665|ref|YP_288322.1| hypothetical protein Tfu_0261 [Thermobifida fusca YX]
 gi|71914397|gb|AAZ54299.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 680

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 93/257 (36%), Gaps = 36/257 (14%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               T++DP+CG+G  L     H           P +  +GQ+++P    +    + +  
Sbjct: 195 QQTGTVFDPSCGSGTLLHAMARHA----------PGVTLYGQDIDPAAARLARVRLQLAG 244

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            ++D        I+ G +L  D F G      + +PPF +     +       +     R
Sbjct: 245 ADAD--------IRVGDSLRADAFPGLAADTVVLHPPFNQTDWGFE-------ELSFDSR 289

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +  G P   +  + ++ H    +      GG A +VL  +    G       E+    L 
Sbjct: 290 WRYGTPARKEPELAWVQHALAHVRP----GGTAIVVLPPAVASRGSGRRVRREL----LR 341

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              + A++ALPT L         LWIL N   + +  GKV L +A+D       E   + 
Sbjct: 342 RGALRAVIALPTGLATPMGTPLTLWILRNPEDSTDLPGKVLLFDASDGRVDDSPESSTQ- 400

Query: 443 IINDDQRRQILDIYVSR 459
             +      I   Y   
Sbjct: 401 PWSAVA-HAITATYREF 416


>gi|296269612|ref|YP_003652244.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
 gi|296092399|gb|ADG88351.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
          Length = 625

 Score =  111 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 119/384 (30%), Gaps = 80/384 (20%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+ R+    S    +  TP +V      L               +RT+ DP CG G  L
Sbjct: 134 FLLDRYAEVHSRRLAE--TPPEVAEFMARLAGPG-----------VRTVLDPACGLGILL 180

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +                 +   +GQE+E     +    + +  +  +        ++ G 
Sbjct: 181 SAM-------------KGVEHAYGQEIEEALARIAKIRLDLTGIPGE--------VRAGD 219

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +L  D +        + +PPF ++            +     R+  GLP  ++  + ++ 
Sbjct: 220 SLRDDAWPDLLVDAVVCHPPFNERNWGYD-------ELVHSPRWEYGLPPKTESELAWVQ 272

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H  + L                       A      IR  LL    ++A++ L       
Sbjct: 273 HALSHLVPGGLA--------LLLLPAVVAARRSGRRIRSNLLRRGALQAVIGLSAKTVGG 324

Query: 401 TNIATYLWILSNRKTEE---RRGKVQLINAT-----------DLWTSIRNEGKKR----- 441
           T +  ++WIL  RK  +      +V +  A              + + R     R     
Sbjct: 325 TGLPVHIWIL--RKPADDGPPPSRVLMAEAEPGTFDEVIEVWREFQADREREIDRPGLCR 382

Query: 442 ----RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLAR 497
                 + DD        YV  +    S       F   R ++LR L+ +  L    +  
Sbjct: 383 TVPVIELVDDAVDVTPGRYVGAQEVSAS------DFPAIRERLLRGLKRTIELIPEAVPG 436

Query: 498 LEADITWRKLSPLHQSFWLDILKP 521
               +    +S L +   L++++ 
Sbjct: 437 GGRTMPLVTVSELERIGALEMVQA 460


>gi|304387518|ref|ZP_07369707.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|254674213|emb|CBA09997.1| type I restriction enzyme M protein [Neisseria meningitidis
           alpha275]
 gi|304338405|gb|EFM04526.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 157

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 23/140 (16%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+      G+ AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERR------------GKVQLINATDLWTSIR 435
           + I+ LP +LF+ T I   + ++     +  +            G V +I+A+  +    
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVIDKEHAQTAQFAEEGTNQVISGGSVFMIDASRGFI--- 127

Query: 436 NEGKKRRIINDDQRRQILDI 455
            +G K R + +    +I+D 
Sbjct: 128 KDGNKNR-LREQDIHKIIDT 146


>gi|71275744|ref|ZP_00652029.1| N-6 DNA methylase [Xylella fastidiosa Dixon]
 gi|71163635|gb|EAO13352.1| N-6 DNA methylase [Xylella fastidiosa Dixon]
          Length = 188

 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 21/187 (11%)

Query: 317 KNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +     RF   G      G   +L H    L       GRAA+VL +  +  G     E 
Sbjct: 11  RQRPFDRFRTAGGITSGKGDWAWLQHTLACLHDH----GRAAVVLDTGAVTRGSGSKNED 66

Query: 376 E---IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           +   IR+W ++ DLI+ ++ LP +LF+ T  A  + +L+ RK   R+ K+ L+NA+  + 
Sbjct: 67  KERSIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVLNKRKPAARKDKIVLLNASRRY- 125

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
               +GK +  + ++  R +  +Y+  E             G   I   +     + L  
Sbjct: 126 ---KKGKPKNYLPEEDVRSLAALYLKGEPV-------AGELGV--ITQQQAEEADYNLSP 173

Query: 493 TGLARLE 499
                + 
Sbjct: 174 GRCEAVR 180


>gi|251793527|ref|YP_003008256.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700]
 gi|247534923|gb|ACS98169.1| restriction enzyme [Aggregatibacter aphrophilus NJ8700]
          Length = 637

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 115/318 (36%), Gaps = 52/318 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  +   Y   +  +     +     +TPR +V L   L+                +++D
Sbjct: 304 EDYLGRFYGEFMS-YSGGDGQTLGIVLTPRHIVELFCELIDI----------KPTDSVFD 352

Query: 212 PTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           P CGT GFL  AM+H+    D     +       HG EL+P    +    M++R      
Sbjct: 353 PCCGTAGFLIAAMHHMLQKTDKEDEKRNIRKNQLHGIELQPYMFTIATTNMILRG----- 407

Query: 269 RRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
             D   N++Q   L ++      K  +  + NPP+ +  + + +                
Sbjct: 408 --DGKSNLEQEDFLKQNPAQIQLKGCNIGMMNPPYSQGSKANPN---------------- 449

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                     L+ +     L       G+A +++  S +        E  I+  +L+   
Sbjct: 450 ----------LYEISFTEHLLDSLTEDGKAIVIVPQSSM--TGKTKEEQSIKENILKKHT 497

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIIN 445
           +E ++ L  + F+       + + +     ++   V+ IN   D +   ++ G    +  
Sbjct: 498 LEGVITLNKNTFYGVGTNPCIAVFTTGIPHDKDKIVKFINFENDGFEVQKHIGLVETVSA 557

Query: 446 DDQRRQILDIYVSRENGK 463
            D+++ +LD++  R   +
Sbjct: 558 KDKKQHLLDVWFGRIQAE 575


>gi|586070|sp|Q07605|T4BA_BACCO RecName: Full=Restriction enzyme BgcI subunit alpha; Includes:
           RecName: Full=Adenine-specific methyltransferase
           activity
 gi|304140|gb|AAA16626.1| restriction endonuclease alpha subunit [Bacillus coagulans]
          Length = 637

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 98/299 (32%), Gaps = 50/299 (16%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           ++         ++ N Y   + ++G          +TPR +  L   L+           
Sbjct: 294 MDKIKSNTDFDILGNFYGEFV-KYGGNDGNPLGIVLTPRHITSLMAELIGINKSDF---- 348

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                 + DP CGTG FL  AMN +    +     +       +G E++ +   +    M
Sbjct: 349 ------VLDPACGTGAFLISAMNRMLGQAENDDERRDIKQNRLYGIEIQQKLFTIATTNM 402

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           ++R        D   N+ + + L+ D     G   +  L NPP+ +  + D+     E  
Sbjct: 403 ILRG-------DGKSNLIRDNCLTFDNTIMNGYGINKILMNPPYSQ-AKNDQTQHLSE-- 452

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                             + F+      L      GG+   ++  S +        +   
Sbjct: 453 ------------------LSFIQQALEML----VVGGKLCAIVPQSTMV--GKNRHDKAR 488

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           ++ +L+   +E ++ L  D F    +   + I           +V  +N  D    +R 
Sbjct: 489 KKQILKQHTLETVITLNKDTFHGVGVNPCIVIFKAGIKHPENKRVSFVNFEDDGHVVRK 547


>gi|167010572|ref|ZP_02275503.1| hypothetical protein Ftulh_07629 [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 322

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 101/286 (35%), Gaps = 38/286 (13%)

Query: 39  TLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGST 94
             L+ L             + E Y+           +          +            
Sbjct: 32  LFLKFLNDYENEKSLEAELIGEDYIFVLDEKYRWNIWAAPKDADGKLDVINADTGDDLLD 91

Query: 95  NTRNNLESYIASF---SDNAKAIFEDFDFSSTIARLEK----AGLLYKICKNFSGIELHP 147
                L  Y+ SF    ++ K+I   +   +    L+        L  +      +    
Sbjct: 92  IINKELFPYLKSFKSIDEDVKSI--KYKIGAIFEFLDNCIASGHTLRDVINEIDELNF-N 148

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  +S IYE+L++  GS+    + +F TPR +V     ++          +P   +
Sbjct: 149 KKEDLYQLSQIYENLLKEMGSDGG-NSGEFYTPRPLVKAIVDVV----------NPQAGQ 197

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           T+YDP  GT GFL DA  H+       +  K        G+E  P ++ + V  M++  +
Sbjct: 198 TVYDPAAGTCGFLIDAYEHMYSKELSTTQLKFLNKETFFGKEKTPLSYVMGVMNMILHGI 257

Query: 265 ESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEK 307
                   S NI + +TL KD   L    R++  L+NPPFG K + 
Sbjct: 258 -------TSPNINKANTLVKDIRSLEEKDRYNIILANPPFGGKEKA 296


>gi|222530437|ref|YP_002574319.1| N-6 DNA methylase [Caldicellulosiruptor bescii DSM 6725]
 gi|222457284|gb|ACM61546.1| N-6 DNA methylase [Caldicellulosiruptor bescii DSM 6725]
          Length = 881

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/483 (15%), Positives = 164/483 (33%), Gaps = 82/483 (16%)

Query: 127 LEKAGLLYKICK---NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           L++A L  ++ +    F         V     + +YE  +R+      +    + TPR+V
Sbjct: 282 LQQAELFGQVLESFKKFEDEYGSLKYVSKEFKTRLYETFLRQSAGI--KSLGQYFTPRNV 339

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA-------MNHVADCGSHHKI 236
           V     +                 ++ DP CG GGF+ +                     
Sbjct: 340 VRAMVKMSKANM-------LPPGTSICDPFCGVGGFILETILINENIWREFEPKNGKIDP 392

Query: 237 PPILVPHGQELEP----ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----- 287
              LV + +  +      T  +  A MLI   +   +      +++    +K+ F     
Sbjct: 393 QITLVGYDKGTDEKEDERTIILAKANMLIYLSDFLAKYHSKTYLEE---FAKNAFNKVFK 449

Query: 288 ------------TGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                         +++   L+NPP+        K+ +++E+ +      G G       
Sbjct: 450 LLRTNLGTFGLREEEKYDLILTNPPYVTSGVSSIKEIIKRENMDDYYTANGRGT------ 503

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             L +  +   L+     GG+A +++    L        +  +  ++ +  ++E I++LP
Sbjct: 504 EALAIEWIIKSLKK----GGQALVIVPDGLLM-------QKNMLDYIKKKCIVEGIISLP 552

Query: 395 TDLFFRTNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
              F+ T   TY+ IL  +  E   ++  V L   +++  +  +   KR  I+ +   + 
Sbjct: 553 PRTFYATPKKTYILILEKKYDENKIQQKPVFLYLVSEIGETRDS---KRFKIDQNDLEEA 609

Query: 453 LDIYVSRE------NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
           + ++   +      +    +++++  F   ++      +     +K  L  +E       
Sbjct: 610 VKLFNYFKVNLEPPDNLRCKVMNFEEF--DKLTHWMVDKFWTEDEKQKLGIIEEK----- 662

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT--LKVKASKSFIVAFINAF 564
              +    + +ILK M   +      + F ++  K          +   K F    I   
Sbjct: 663 -EEISAEDFYNILKNMRDYLDTQLRDDFFFRKDFKEKALNINYAVISLDKLFDFPAIKGV 721

Query: 565 GRK 567
             K
Sbjct: 722 TEK 724


>gi|71275696|ref|ZP_00651981.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Dixon]
 gi|71897848|ref|ZP_00680074.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Ann-1]
 gi|71163587|gb|EAO13304.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Dixon]
 gi|71732403|gb|EAO34457.1| Type I restriction-modification system, M subunit [Xylella
           fastidiosa Ann-1]
          Length = 265

 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 28/205 (13%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGS 168
              I + F       R      L  + + FS          V    +   YE+L+R+F  
Sbjct: 35  VIDIVD-FAIERNGERDINPAKLRGVVETFSDPRYRLGLADVQPDFLGRAYEYLLRKFAE 93

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              + A +  TP ++  L   +L           P      +D  CG+GG L        
Sbjct: 94  GSGQSAGELFTPTEMGFLMAHIL----------HPKPGDACHDYACGSGGLLIKLQIVAH 143

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +     ++P      GQEL+ + +A+     +I  +E +          +G T+    F 
Sbjct: 144 ELDPTSRVPVK--LSGQELQADNYAIAQMNAIIHDMEVEL--------ARGDTMINPKFR 193

Query: 289 G-----KRFHYCLSNPPFGKKWEKD 308
                 +     ++NP + + +  D
Sbjct: 194 AASGKIRSHDIVVANPMWNQPFTAD 218


>gi|307325247|ref|ZP_07604450.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
 gi|306889051|gb|EFN20034.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
          Length = 573

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 103/296 (34%), Gaps = 40/296 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L+ R  +  +    + MT   +     A      D     S   I T+YDP CG G
Sbjct: 127 LYADLVERCIASTTRSGGEPMTTLALER-IVAAFTGSADDAAGASDRTIGTVYDPACGIG 185

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+             P    +GQEL P T A+      +           +  + 
Sbjct: 186 TLLLTAV-------------PGAHRYGQELNPATAAIAEFRARLDG--------RTATLA 224

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L KD F   R    + +PP G                    R+  G+P  S+  + 
Sbjct: 225 CGDSLRKDAFPDLRADLVVCDPPVGV-------PDWGRDDLLLDPRWELGVPPRSESELA 277

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H           GGRA +VL SS  +          IR  L+   L+ ++VALP  L
Sbjct: 278 WVQHCYAHTAP----GGRALLVLPSSVAYRKTGR----RIRAELVRRGLLASVVALPPGL 329

Query: 398 FFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
               +   +LWIL      +     +++I+ +         G K      +Q   +
Sbjct: 330 MSSHSQPVHLWILRRPAQGDPAPTHIRMIDLST--ADPDGIGMKDCAPTPEQIADV 383


>gi|207109985|ref|ZP_03244147.1| type I restriction enzyme M protein (hsdM) [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 138

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 21/157 (13%)

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGG 354
           SNPP+  KW  D + +          RF P   L   +   + F MH+ + L       G
Sbjct: 1   SNPPYSTKWVGDSNPLLMN-----DERFSPAGVLAPKNAADLAFTMHMLSYLSNS----G 51

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            AAIV     L+ G A   E++IR +L++ + I+ ++ALP +LFF T+IAT + +L   K
Sbjct: 52  TAAIVEFPGVLYRGNA---EAKIREYLVKENFIDCVIALPENLFFGTSIATCILVLKKNK 108

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            ++       I+A+  +     EGKK   + +  R +
Sbjct: 109 KDDTT---LFIDASKEFV---KEGKK-NKLKEHNREK 138


>gi|42794862|gb|AAS45789.1| SLV.6 [Streptomyces lavendulae]
          Length = 814

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 121/310 (39%), Gaps = 38/310 (12%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +++  N ++  I  +       + +F TP+ VV L  +L              +  T+YD
Sbjct: 240 NQLGGNAFQLFIDAYEKHARLRSREFFTPQGVVRLMASLARTSLG-------RVPHTVYD 292

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP--- 268
           P    G FL +++   A           +   G+  +P+   +    +++  +       
Sbjct: 293 PYVRGGEFLAESVTDSASILRSDPELAPVTVFGETTDPDPALLAGLNLVLLGVRPRVRLV 352

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            +     I+ G                L+NP F  K    +   E        G +  G 
Sbjct: 353 HKAPWAEIRDG--------EAPAADLVLTNPRFNMKDSAGEACRE--------GTWAYGA 396

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P + + ++ ++ H    L      GGRAA+V+ +       A + E+ IRR +++  ++E
Sbjct: 397 PPVDNDNLAYVQHALASLR----AGGRAALVMPTKA--GNSASAAETAIRRAMVQAGVVE 450

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++A+P  LF  T +   +W+L +   ++   +V  ++A  L          R ++ +D 
Sbjct: 451 CVIAMPAKLFSGTAVPVSVWLLRH--PDDPCERVLFLDARHLGVRQ----GPRCVLKEDD 504

Query: 449 RRQILDIYVS 458
            + +L  Y +
Sbjct: 505 VQAVLGTYEA 514


>gi|314933992|ref|ZP_07841357.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87]
 gi|313654142|gb|EFS17899.1| restriction enzyme BgcI subunit alpha [Staphylococcus caprae C87]
          Length = 635

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 130/367 (35%), Gaps = 50/367 (13%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + I    DN   I  D   +     L    L Y   K    ++ +       ++ N Y  
Sbjct: 254 AKIGELKDNFTFIQNDLTLNRVRDDLGMTPLKYFTIKLNEKLKKNIKHSDMDILGNFYGE 313

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + ++G          +TPR + +L   L+   ++            + DP CG+GGFL 
Sbjct: 314 FV-KYGGSDGNSLGIVLTPRHITNLMCELIDINEND----------YVLDPCCGSGGFLI 362

Query: 222 DAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            AMN + +  +             HG EL+ +   +    M++R        D   N+++
Sbjct: 363 AAMNKMLNQTTDESKQAQIKQKQLHGIELQQKLFTIATTNMILRG-------DGKSNLKR 415

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                    F   +    L NPP+ +   K+   + +                       
Sbjct: 416 DDIFHVGKDFYTDKITKALINPPYSQAKTKNLSHLSEIS--------------------- 454

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+    + ++     G + A ++  S +        +   +R +L+N+ +E ++ L  D 
Sbjct: 455 FINETLSLMKS----GAKLAAIVPQSTMI--GKTKNDKNYKREILDNNSLETVITLNKDT 508

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIY 456
           F+   +   + + +    ++ + +V  +N +D  +   ++ G         ++  +L++ 
Sbjct: 509 FYGVGVNPCIAVFTAGIPQDDKKRVNFVNFSDDGYVVRKHVGLVGDGTEKSKKEYLLNVL 568

Query: 457 VSRENGK 463
              E+  
Sbjct: 569 NDYEDAD 575


>gi|290559136|gb|EFD92499.1| N-6 DNA methylase [Candidatus Parvarchaeum acidophilus ARMAN-5]
          Length = 619

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 143/450 (31%), Gaps = 63/450 (14%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L+  E   E   +   EK       +  L S +        N +   L +  ++  +N
Sbjct: 164 LFLKTAEDINEILHAGGIEKDSRAKVVSALLLSLLDDTP-PNINATPKVLVSDINSRVKN 222

Query: 99  NLE--------SYIASFSDNAKAIFEDFDFSS-TIARLEKAGLLYKICKNFSGIELHPDT 149
            LE         YI     ++        F +  I  L +   L                
Sbjct: 223 TLERESKIEMFDYIRLNLPSSAD--NHIKFKTAVIKTLRELNDL---------NIKSAMN 271

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               V+   YE  ++      ++     +TPR +      ++    + +           
Sbjct: 272 SGTDVLGKFYEVFLKYGN--GAKEIGIVLTPRHITQFVAEVMSLRPEDII---------- 319

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           YDP CGTGGFL  A + +     +   +       G +      ++ +  M+ R      
Sbjct: 320 YDPCCGTGGFLVAAFDEIKRNYKNEVDVFKKNNIFGVDQSDAVVSLAIVNMIFRG----- 374

Query: 269 RRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             D   NI +G++L K L +   G       S+ P     E     +             
Sbjct: 375 --DGKNNIIEGNSLVKFLHSRVVGDHLSAFYSDTPSATGKEPVTRVLMN----------P 422

Query: 326 PGLPKISD-GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           P   K +D     F+     +++     GG    +L  S        +     RR LLEN
Sbjct: 423 PFPTKKNDEKEYKFVDQALKQMKE----GGLLFSILPYST----TVKASRRNWRRRLLEN 474

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
           + + A++ LP DLF+ T + T    +      ++   V  +   +     +   +   + 
Sbjct: 475 NTLLAVMTLPEDLFYPTGVVTLGIFVKKGIPHDKNRNVLWLRTLNDGLLKKKGKRLPNLR 534

Query: 445 NDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
             +  ++I  +  S    + + + +   F 
Sbjct: 535 AKNDLKEIKSLLRSFLLDQETEVKNIPQFQ 564


>gi|293363461|ref|ZP_06610218.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
 gi|292552981|gb|EFF41734.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
          Length = 229

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 22/186 (11%)

Query: 287 FTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG-LPKISDGSMLFLMHLAN 344
               + F   +SNPP+  KWE   + +          RF    L   S   M F+MH+ N
Sbjct: 2   HENFKPFDIIVSNPPYSTKWEGKNNPLNAN-----DERFSVTTLAPNSKADMAFVMHMIN 56

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G AAIV     L+   A   E +IR +L++ +LI+ IV LP +LFF T+I 
Sbjct: 57  HLSSS----GSAAIVEFPGVLYRCGA---EKDIREYLVKENLIDTIVKLPNNLFFGTSIY 109

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463
           T + +L   K E+    +  ++A+  +        K+  ++     +I++I   ++  + 
Sbjct: 110 TCILLLRKNKNEQG---IFFVDASKEFIK----NGKKNKLSKQNLEKIIEIIRYKKEIED 162

Query: 464 FSRMLD 469
           FS ++D
Sbjct: 163 FSILID 168


>gi|254383775|ref|ZP_04999123.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
 gi|194342668|gb|EDX23634.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
          Length = 737

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 86/263 (32%), Gaps = 44/263 (16%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           +    +  + TP  +  L   LL           P     + DP CG+G  L  A     
Sbjct: 163 DEGAASGVYQTPEGLAVLMARLL-----------PAEASRVLDPACGSGTLLAAAA---- 207

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          GQ+  P         +L+   E++        I+ G +L  D F 
Sbjct: 208 -------RRDARKLFGQDSLPVQGRRTAVRLLLAAPEAETT------IRVGDSLRDDAFP 254

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
                  L NPPF        D      +     R+  GLP   +  + ++ H    LE 
Sbjct: 255 DVTVDAVLCNPPFA-------DRDWGHDELAYDPRWAYGLPPRLESELAWVQHALAHLEP 307

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GG A ++L  +  F     S    +R  L+    + A+++LP    +  +I   +W
Sbjct: 308 ----GGHAVMLLPPALAFR----SSGRRVRAELIRAGALRAVISLPARAAYPLHIGLQIW 359

Query: 409 ILSNRKT-EERRGKVQLINATDL 430
           +    +     R  V  ++    
Sbjct: 360 VFQRPEPGGTDRTTVLFVDGEGE 382


>gi|260914376|ref|ZP_05920845.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
 gi|260631477|gb|EEX49659.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325]
          Length = 667

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 101/504 (20%), Positives = 161/504 (31%), Gaps = 127/504 (25%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY +S    +  G    +  + +  A        IFE  D     +R         + + 
Sbjct: 220 FYVSSTEKGNLDGQNACKERINNIFAGVKRQFSQIFEANDEIKLSSR--------SLVEI 271

Query: 140 FSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            S ++ +     D  +    YE ++    S +      F TPR+V+H+A  ++       
Sbjct: 272 VSELQGYSFLATDVDLKGRAYEEIVG---SNLKGDRGQFFTPRNVMHMAVKMI------- 321

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHV------------------------ADCGSHH 234
              +P +   + DP CGTGGFL  AMN V                               
Sbjct: 322 ---NPKLDEKILDPACGTGGFLVTAMNMVIEQLKQDWAKDLGADEHQWGDDEKKALQQRI 378

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291
                    G ++ PE        M++         D S NI +  +L            
Sbjct: 379 SEAAASSFFGFDIAPELVKATKMNMVMNN-------DGSGNILRNDSLLPPHLWESDFKE 431

Query: 292 ---------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                                F   ++NPPFG K    ++ +  +++ G     G   PK
Sbjct: 432 NLAKALGISASQFKSHQDIGLFDVIITNPPFGSKITIQQEYMLNQYEIGH----GWENPK 487

Query: 331 ISDG--------------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
              G                LF+      L+      GR AIVL  + L       G   
Sbjct: 488 KKGGTEWLKKSVTSAAPPEQLFVERCLQLLKPA----GRMAIVLPDNIL----GAPGLGY 539

Query: 377 IRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR----KTEERRGKVQLINATDLW 431
           IR+WLL+   I A V L ++ F   T + T + IL  +    K  +  GK+Q  N   + 
Sbjct: 540 IRQWLLKEAKIIASVDLDSNTFQPHTGVQTSILILQKKTEAEKKADLEGKMQPYN-IFMA 598

Query: 432 TSIRNEGKKR---RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
              +    KR     + D+   +IL      +  + S            +   +  R   
Sbjct: 599 VVDKVGHDKRGVNTYLRDENGDEIL------QEVEESSA---------DVSGEKTKRFDK 643

Query: 489 ILDKTGLARLEADITWRKLSPLHQ 512
           I D   LA  E    W+K   +  
Sbjct: 644 IPDDQTLAVPEVFARWKKEEGIEW 667


>gi|237747527|ref|ZP_04578007.1| RM-CspCI protein [Oxalobacter formigenes OXCC13]
 gi|229378889|gb|EEO28980.1| RM-CspCI protein [Oxalobacter formigenes OXCC13]
          Length = 682

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 115/348 (33%), Gaps = 62/348 (17%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNI 158
            Y    S     + + F+F  +   L   G L K+  +    E+ P    +    ++S+ 
Sbjct: 311 EYANIPSTRVHEMQQAFNFIKSHTALIDEGYLIKLVADIQK-EVRPFIKSNKYFDIVSHC 369

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y   ++   ++ +      +TP  +  L   +     D++          + D  CGT G
Sbjct: 370 YVEFLKYANNDSA--LGIVLTPAHITELFCDIAGVTKDSV----------VLDNCCGTSG 417

Query: 219 FLTDAMNHVADCGS----HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           FL  AM  +           +        G E +     + V+ M+I         D   
Sbjct: 418 FLIAAMQKMVALAKGDSKEIENIKKERLIGIEYQDHIFTLAVSNMIIHG-------DGKT 470

Query: 275 NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           NI +G    K       +    L NPP+      D+    + +                 
Sbjct: 471 NIIKGDCFKKIQDAAAYKPTVGLLNPPYNDVTGIDELEFVENN----------------- 513

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
                       L      G   AIV     L+    G   +EI++ LLE   +EA++++
Sbjct: 514 ------------LSAIQQNGIVVAIVPMRCALYQDGRG---AEIKKRLLEKHTLEAVMSM 558

Query: 394 PTDLFFRTNIATYLWILSNRKTEER-RGKVQL-INATDLWTSIRNEGK 439
           P DLF+   + T + +       +  R K        D +   ++ G+
Sbjct: 559 PDDLFYPVGVVTCVMVFRAHVPHQSGRRKTWFGYWKDDGFLKAKHRGR 606


>gi|290579889|ref|YP_003484281.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus mutans NN2025]
 gi|254996788|dbj|BAH87389.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus mutans NN2025]
          Length = 661

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 127/386 (32%), Gaps = 65/386 (16%)

Query: 95  NTRNNLESYIASFSDNAKA--IFEDFDF-SSTIARLEKAGLLYKI-CKNFSGI------- 143
             + NL+    + S   K   +   F      I   EK   L K   K+F+         
Sbjct: 240 AIKANLQRA--NVSPEVKKDKLLSQFAIIRDDIKINEKNSTLGKTPIKHFTEFLYKSIYQ 297

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L  ++  +  +   Y   +  +     +     +TP+ +  L   L+            
Sbjct: 298 SLRYNSSAEDYLGRFYGEFMS-YSGGDGQNLGIVLTPKHITELFCDLV----------DL 346

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                ++DPTCGT GFL  AM+ +    D     +        G E +     +    M+
Sbjct: 347 KPTDKVFDPTCGTAGFLIAAMHDMLTKADSDYQREQIRKHQLFGIEEQSYMFTIATTNMI 406

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +R        D   N++    L ++      K+ +  + NPP+    + + +  E     
Sbjct: 407 LRG-------DGKSNLENQDFLRQNPSKLQLKQCNVGMMNPPYSMGSKTNTELYEINFTE 459

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                                      L      G +A +++  S  F G     E E +
Sbjct: 460 --------------------------HLLNSLVEGAKAVVIVPQST-FTG-KTKFEKEAK 491

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNE 437
           + +L +  +E ++ L  + F+       + + +         + + IN   D +   ++ 
Sbjct: 492 QNILNHHTLEGVITLNKNTFYGVGTNPCIAVFTAGIPHHPERECKFINFENDGFEVSKHI 551

Query: 438 GKKRRIINDDQRRQILDIYVSRENGK 463
           G        D+++ +LD++  R   +
Sbjct: 552 GLVETATAKDKKQHLLDVWFDRTEAE 577


>gi|157804105|ref|YP_001492654.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
 gi|157785368|gb|ABV73869.1| NAD-dependent DNA ligase LigA [Rickettsia canadensis str. McKiel]
          Length = 869

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 83/562 (14%), Positives = 179/562 (31%), Gaps = 70/562 (12%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           +   E  +    +       +   + +        F++T  Y    L     ++ ++   
Sbjct: 200 DAFWEFVKLFSLKMDNDKYINKKLMNNQEISMDDIFFST-NYIDKNLSLFPKQDPIKKIF 258

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHL 162
            +F +  + +           + E+  L     K       +   + + + +   I+E  
Sbjct: 259 NNFREELEILIIKEGKKRIFTKGEELNLSLDTIKYVVKRLEKFDLNDIDEDLNGRIFEVF 318

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R   +        + TPRDV+     L            P     + D  CG+GGFL +
Sbjct: 319 LR--AAVRGRELGQYFTPRDVIKFMVKL----------AGPNENTKILDACCGSGGFLIE 366

Query: 223 AMNHVADCGSHH----------KIPPILVPHGQELEPETHAVCVAGMLIR----RLESDP 268
           +  ++ +    +          K     +  G + E +   +    M +           
Sbjct: 367 SFAYIMNNIPKNLSKSKHEEIVKNIKENLIFGVDKEEKVVRLARINMYVHKDSSSKIFRL 426

Query: 269 RRDLSKNIQQGSTLSKDLFTGKR----------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +  L KN+    TL  +     +          F   L+NPPF   ++       K    
Sbjct: 427 QDALDKNLTIDPTLPDEEQQQYKDAKEVLINGAFQIVLTNPPFSSNYKMKDKDTNKSDTR 486

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                   G     + ++LF+    + L      GG+   V+  S L      S     R
Sbjct: 487 ILKNYTVVGKKNSINSNILFIERYYDLL----ELGGKLITVIDDSLLNAKNQAS----FR 538

Query: 379 RWLLENDLIEAIVALPTDLFFR--TNIATYLWILSNRKTEE-RRGKVQLINATDLWTSIR 435
            W+L+   I+A+++LP + F    T I T +  L  ++ +   + K+ +    ++     
Sbjct: 539 EWILDRFHIKAVISLPFNAFVNASTTIKTSIIYLEKKEYKSISKNKIFMAICNNVGHDDS 598

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTG 494
                     +     I+          +S+ LD  + F    I +    +   +     
Sbjct: 599 G-----NDTPERNNLNIV----------YSKWLDFNKDFSLPDIIIENQNKSELLTCSLQ 643

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           +  ++      K       F+   L+ + ++I      +  +K S +    K++  K  +
Sbjct: 644 IFSIDYSKMSSKRFDAF--FYSPELQNIYKKINSLDKNKFIIKTSKEFTLQKSVNAKYVQ 701

Query: 555 SFIVAFIN--AFGRKDPRADPV 574
           +      N    G  + + D V
Sbjct: 702 NNFNTIFNYIEVGSCNKKGDIV 723


>gi|148654897|ref|YP_001275102.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148567007|gb|ABQ89152.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 725

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 97/254 (38%), Gaps = 64/254 (25%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F  +       + TPR +V L TAL           +    + + D  CG+GG L  +  
Sbjct: 86  FRLDNMRPGGQYPTPRHIVRLMTAL-----------AETTKKVVADFACGSGGLLIHS-- 132

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                             G ++ PE   +  A + +         +   +I++G+ L   
Sbjct: 133 ------------QGSSLVGVDISPEWARIARANLQLH--------EKQGDIREGNALRV- 171

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
             + +RF   + NPPFG+K   D     +                        +    N 
Sbjct: 172 AKSDERFERIVMNPPFGEKIASDFGTRSETAL---------------------INLALNH 210

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNI 403
           L       GRAA++     LF+    S E ++R+ L+++  +EAI+ LP D F  + T +
Sbjct: 211 LAT----NGRAALLAPGGVLFSN--SSAEEKLRQRLVDDVTLEAIITLPEDAFQPYST-L 263

Query: 404 ATYLWILSNRKTEE 417
            T+L ++ N+K  E
Sbjct: 264 TTHLLLIENKKPVE 277


>gi|119513482|ref|ZP_01632506.1| putative type I restriction-modification system,
          methyltransferase subunit [Nodularia spumigena CCY9414]
 gi|119461862|gb|EAW42875.1| putative type I restriction-modification system,
          methyltransferase subunit [Nodularia spumigena CCY9414]
          Length = 108

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 8  AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKY----LAF 62
             + +FIW  A+D L   +    +  VILP  +LRRL+C LE T++ V E+        
Sbjct: 6  QNKIVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLESTKADVLEEVRFQREEA 65

Query: 63 GGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
              +D     + +GY FYN SE++L  L +
Sbjct: 66 KFEVLDPSGLQEASGYVFYNVSEWTLKKLLN 96


>gi|291448530|ref|ZP_06587920.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998]
 gi|291351477|gb|EFE78381.1| N-6 DNA methylase [Streptomyces roseosporus NRRL 15998]
          Length = 696

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 122/386 (31%), Gaps = 80/386 (20%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           L  +   N R  + + +    ++ K    + F  +  I   ++A  L  I    +  +L 
Sbjct: 241 LKEMFDANGRAAISTRVKGLFEDVKTEYKDVFKPTDEITLSDRA--LSFIVSELAPYDLI 298

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                       Y+ L+    + +      + TPR  V+L   +L           P   
Sbjct: 299 --GTDVDAKGIAYQELVG---TNLRGDRGQYFTPRGAVNLMVEIL----------DPKED 343

Query: 207 RTLYDPTCGTGGFLTDAMNHVA--------------------DCGSHHKIPPILVPHGQE 246
            T+ DPTCGTGGFL   + H+                       G   K        G +
Sbjct: 344 ETVLDPTCGTGGFLQATLKHLHHTWKKEAGTLGFPDTEEERERYGDKLKEFADEHLFGSD 403

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--------------FTGKRF 292
            +P         ++            + N+    +L+                       
Sbjct: 404 FDPFLVRATTMAIM-------TLAQTTGNVFHMDSLAFPQGHLSGVEAAKKRIPLDKPTV 456

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPG---------LPKISDGSMLFLM 340
              L+NPPFG       ++V    +NG     GR             +P       LF+ 
Sbjct: 457 DVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTSVPSSMAPEQLFIQ 516

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-- 398
                ++     GGR  IVL +  L N      +  IRR++L N  + A V LP + F  
Sbjct: 517 RAIEWVKP----GGRIGIVLPNGILSNPGPT--DEAIRRYILRNCWVLASVELPVETFVV 570

Query: 399 -FRTNIATYLWILSNRKTEERRGKVQ 423
               NI T L  L  +  +E +    
Sbjct: 571 DANVNILTTLLFLKRKTRQEIQNHDL 596


>gi|307566382|ref|ZP_07628821.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
 gi|307344959|gb|EFN90357.1| conserved domain protein [Prevotella amnii CRIS 21A-A]
          Length = 237

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 40/239 (16%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-------------- 49
            T +   L   +W  A  L G     DF   +L F  L+ L                   
Sbjct: 2   TTENKDELGKTLWDIANSLRGAMMADDFRDYMLSFLFLKYLSDNYVAFAKKELGGDYPVI 61

Query: 50  PTRSAV-------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN------T 96
             + A         + +      +IDL          +     Y   ++           
Sbjct: 62  DIKEAYAVGVNSPLQLWYENNPQDIDLFEAQMRKKIHYVIKPHYIWDSIAEEARTQSDSL 121

Query: 97  RNNLE---SYI--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELH 146
             NLE    YI   SF  + K +F + + +S   +L     E+  LL K+          
Sbjct: 122 LENLEKGFKYIEEESFDTSFKGLFSEINLNS--EKLGKNYAERNTLLAKVINKIKEGISE 179

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            DT     + + YE+LI +F +   + A +F TP+ +  + + ++              
Sbjct: 180 LDTTT-DALGDAYEYLIGQFAANSGQKAGEFYTPQGISSILSKIVTLDCQDPKSGKKKK 237


>gi|191639034|ref|YP_001988200.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|190713336|emb|CAQ67342.1| Type I restriction-modification system methyltransferase subunit
           [Lactobacillus casei BL23]
 gi|327383094|gb|AEA54570.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei LC2W]
 gi|327386278|gb|AEA57752.1| Type I restriction-modification system, M subunit [Lactobacillus
           casei BD-II]
          Length = 235

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 35/205 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA--------LEPTR 52
           M + T    +L   +W +A+ L      +++   +L     + L           LE   
Sbjct: 1   MAQMTS--QTLYQALWNSADILRSKMDASEYKNYLLGLIFYKYLSDRMVVYASDQLEEKT 58

Query: 53  SAVREKYL----AFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASF 107
           + + +       A+   ++  +    V+    Y+     + + L         +  +   
Sbjct: 59  TDLDKAQQIYTDAYNDKDLHDDLISNVSDEFGYHIQPDLTFTALIDKIDHGTFQ--LEDL 116

Query: 108 SDNAKAI----------FEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
           S + + I          FED D  S   +L     ++  ++  + K  S ++L      +
Sbjct: 117 SQSFRDIEQSSEFFSGLFEDVDLYS--RKLGATPQKQNQVISDVMKQISTLDLVGQN-TN 173

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDF 177
            ++ + YE+LI +F S+ ++    F
Sbjct: 174 DILGDAYEYLIGQFASDPAKMLVSF 198


>gi|239945070|ref|ZP_04697007.1| type I restriction-modification system, M subunit, putative
           [Streptomyces roseosporus NRRL 15998]
 gi|239991532|ref|ZP_04712196.1| type I restriction-modification system, M subunit, putative
           [Streptomyces roseosporus NRRL 11379]
          Length = 718

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 122/386 (31%), Gaps = 80/386 (20%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           L  +   N R  + + +    ++ K    + F  +  I   ++A  L  I    +  +L 
Sbjct: 263 LKEMFDANGRAAISTRVKGLFEDVKTEYKDVFKPTDEITLSDRA--LSFIVSELAPYDLI 320

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                       Y+ L+    + +      + TPR  V+L   +L           P   
Sbjct: 321 --GTDVDAKGIAYQELVG---TNLRGDRGQYFTPRGAVNLMVEIL----------DPKED 365

Query: 207 RTLYDPTCGTGGFLTDAMNHVA--------------------DCGSHHKIPPILVPHGQE 246
            T+ DPTCGTGGFL   + H+                       G   K        G +
Sbjct: 366 ETVLDPTCGTGGFLQATLKHLHHTWKKEAGTLGFPDTEEERERYGDKLKEFADEHLFGSD 425

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--------------FTGKRF 292
            +P         ++            + N+    +L+                       
Sbjct: 426 FDPFLVRATTMAIM-------TLAQTTGNVFHMDSLAFPQGHLSGVEAAKKRIPLDKPTV 478

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPG---------LPKISDGSMLFLM 340
              L+NPPFG       ++V    +NG     GR             +P       LF+ 
Sbjct: 479 DVLLTNPPFGADIPVSDESVLGSFRNGIARSWGRNKETGEVEASTTSVPSSMAPEQLFIQ 538

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-- 398
                ++     GGR  IVL +  L N      +  IRR++L N  + A V LP + F  
Sbjct: 539 RAIEWVKP----GGRIGIVLPNGILSNPGPT--DEAIRRYILRNCWVLASVELPVETFVV 592

Query: 399 -FRTNIATYLWILSNRKTEERRGKVQ 423
               NI T L  L  +  +E +    
Sbjct: 593 DANVNILTTLLFLKRKTRQEIQNHDL 618


>gi|229827314|ref|ZP_04453383.1| hypothetical protein GCWU000182_02700 [Abiotrophia defectiva ATCC
           49176]
 gi|229788932|gb|EEP25046.1| hypothetical protein GCWU000182_02700 [Abiotrophia defectiva ATCC
           49176]
          Length = 293

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 95/272 (34%), Gaps = 43/272 (15%)

Query: 216 TGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T GFL  A  ++ +             +     + +G +++     +    M+   +++ 
Sbjct: 19  TSGFLVAAGEYLKENRKEEIFYNRQKKEHYMNHMFYGYDMDRTMLRIDAMNMMTHGIDNP 78

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   I+   +LS       ++   L+NPPF    + D  + +              
Sbjct: 79  F-------IEYRDSLSDRNSDKDKYSLVLANPPFKGSLDADSVSGDL-----------LK 120

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           + K     +LFL             G R A ++    LF   +     +IR+ ++EN  +
Sbjct: 121 VCKTKKTELLFLTLFIRM----HKIGERCACIVPDGVLF--GSSKAHKDIRKEIVENQRL 174

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
            A++++P+ +F   T ++T + I +          +   + T       +   KR  + D
Sbjct: 175 VAVISMPSGVFKLYTGVSTAILIFTKT-EHGGTDNLWFYDMTADG---FSLDDKRSPVAD 230

Query: 447 DQRRQILDIYV------SRENGKFSRMLDYRT 472
           +    I+  +        R+    S M+  + 
Sbjct: 231 NDIPDIIQRFKNLDKESDRKRTDKSFMVPKKE 262


>gi|325677722|ref|ZP_08157372.1| hypothetical protein CUS_4267 [Ruminococcus albus 8]
 gi|324110583|gb|EGC04749.1| hypothetical protein CUS_4267 [Ruminococcus albus 8]
          Length = 114

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNID 68
           ++   FIW  A  L G ++   +  VI+P  ++RR ECALE T+ AV E+Y         
Sbjct: 18  STEVGFIWSIANKLRGTYQSDKYKDVIIPMVIIRRFECALEATKQAVVEQYK--KNPAYP 75

Query: 69  LESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIA 105
            ++  +V+ Y F+NTSEY+L+ L     +   N  +YI 
Sbjct: 76  AKAMCRVSRYQFFNTSEYTLAELVNDPDHLAANFRNYIE 114


>gi|1771599|emb|CAA64185.1| hypothetical protein [Staphylococcus phage phi-42]
          Length = 639

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 126/367 (34%), Gaps = 51/367 (13%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + I    DN   I  D   +     L    L Y   K    ++ +       ++ N Y  
Sbjct: 258 AKIGELKDNFTFIQNDLTLNRVREDLGMTPLKYFTIKLNEKLKKNIKHSDMDILGNFYGE 317

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + ++G          +TPR + +L   L+    +            + DP CG+GGFL 
Sbjct: 318 FV-KYGGNDGNSLGIVLTPRHITNLMCELIDINKND----------YVLDPCCGSGGFLI 366

Query: 222 DAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            AMN +       +          HG EL+ +   +    M++R        D   N+++
Sbjct: 367 AAMNKMLHETEDEEKKTHIKQEQLHGIELQQKLFTIATTNMILRG-------DGKSNLKR 419

Query: 279 GSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                 +      +    L NPP+ +   K+   + +                       
Sbjct: 420 DDIFHIEKELYANKITKALINPPYSQAKTKNLSHLSEIS--------------------- 458

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+    + ++     G + A ++  S +            +R +LEN  ++ ++ L  D 
Sbjct: 459 FINETLSLMK----IGAKLAAIVPQSTMIGKTKN---DNYKRDILENHSLDTVITLNKDT 511

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIY 456
           F+   +   + + +    ++ + +V  IN +D  +   ++ G         ++  +L++ 
Sbjct: 512 FYGVGVNPCIAVFTAGIPQDEKKRVNFINFSDDGYIVRKHIGLVGDGTEKSKKEYLLNVL 571

Query: 457 VSRENGK 463
              E+  
Sbjct: 572 NDYEDAD 578


>gi|84626048|gb|ABC59617.1| RM-CspCI [Citrobacter sp. 2144]
          Length = 632

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/450 (16%), Positives = 142/450 (31%), Gaps = 84/450 (18%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG---YSFYNTSEYSLSTLGSTNTRN 98
           +R    L  +R     +++       + E  + V+G       NT   +   L + + + 
Sbjct: 171 KRHSDLLAFSRE--LHEFIWTKAKISEEEKPLLVSGTLIALMNNTFIKTFDALPAEDVQE 228

Query: 99  NLESYIASFSDNA------KA--------IFEDFDFSSTIARLEK---AGLLYKICKNFS 141
              + I    D A      K         I  + +     ++  K    G+  +I    +
Sbjct: 229 AWLTAIKKELDKASIPQAKKDTMLQPYTTIAVNPNLGKPDSKTAKEYPDGVFKEIITRIA 288

Query: 142 GIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                         V+   Y   + ++ +   +     +TPR V  L             
Sbjct: 289 DNVWPYINVFHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHVAELF----------SL 337

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCV 256
             +      + D   GTGGFL  AM H+                   G E  P+  A+  
Sbjct: 338 IANVNPKSKVLDICAGTGGFLISAMQHMLKKAVTDKERNDIKQNRLIGIENNPKMFALAA 397

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           + M++R        D   N+ Q S             + +  + NPP+ +          
Sbjct: 398 SNMILRG-------DGKANLHQASCFDNAVIAAVQKMKPNVGMLNPPYSQS--------- 441

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                             SD  +  L  +   L+    GG   AIV  SS +        
Sbjct: 442 -----------------KSDAELHELYFVKQMLDTLTPGGVGIAIVPMSSAISPN----- 479

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-RRGKVQL-INATDLW 431
              +R  L++   ++A++++P +LF+     T + +       E    K        D +
Sbjct: 480 --PMREELMKYHSLDAVMSMPQELFYPVGTVTCVMVWIAGVPHEQMSKKTWFGYWRDDGF 537

Query: 432 TSIRNEGK-KRRIINDDQRRQILDIYVSRE 460
              +++G+        D R + +++Y +RE
Sbjct: 538 VKTKHKGRIDMNGTWPDIRDRWIEMYRNRE 567


>gi|328765965|gb|EGF76048.1| hypothetical protein BATDEDRAFT_93094 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 153

 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 67/166 (40%), Gaps = 20/166 (12%)

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                   +Y P CG+G     ++  +     + K    +  +GQE    T+ +    + 
Sbjct: 1   MIEPYKGKIYGPACGSGEMFVQSVKFIEAHHGNTK---DISIYGQEYTNTTYKMAKMNLA 57

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           IR + ++            +T+SKD     +  + ++NPPF       +      ++  +
Sbjct: 58  IRGISANLGNMAE------NTVSKDQHKDLKVDFIMANPPFN------QKQWRAANELHD 105

Query: 321 LGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             R+ G  +P   + +  +++++ +KL    +  G A  +L++  L
Sbjct: 106 DPRWAGYDVPPTGNANYAWILNIVSKL----SENGVAGFLLANGAL 147


>gi|167644296|ref|YP_001681959.1| N-6 DNA methylase [Caulobacter sp. K31]
 gi|167346726|gb|ABZ69461.1| N-6 DNA methylase [Caulobacter sp. K31]
          Length = 657

 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 71/368 (19%), Positives = 127/368 (34%), Gaps = 90/368 (24%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V  + YE ++    S +     +F TPR++ ++A ++L           P   +T+ 
Sbjct: 290 DVDVKGHAYEEIVG---SNLRGDRGEFFTPRNICNMAVSML----------DPSEGQTIL 336

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--------------------ELEPE 250
           DP CGTGGFL  AMNHV +     ++      +G+                    +  PE
Sbjct: 337 DPACGTGGFLISAMNHVIEKIRVAELEKWKGDYGRADPKIAARISKFAGACIVGLDFNPE 396

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---------FHYCLSNPPF 301
                   M++         D +  + Q ++L       +               +NPPF
Sbjct: 397 LVKATKMNMVMNN-------DGAGGLYQANSLESPATWEEALRDRKLIGSVDLIFTNPPF 449

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGL-------------PKISDGSMLFLMHLANKLEL 348
           G K   D  A+ +++  G    +   +             P      +LF+      L+ 
Sbjct: 450 GSKIPVDDPAILEKYDLGHSWSYNEEIDSWTMNESIQKSQPP----EILFIERCVKFLKP 505

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYL 407
              G GR A+VL    L       G   +R W+L+N  + A + L  D F    ++ T +
Sbjct: 506 ---GTGRVAMVLPDGIL----GSPGLGYVREWILKNTWVLASIDLHPDTFQPNVSVQTSV 558

Query: 408 WILSNRKTE----------ERRGKVQLINATDLWTSIRNEG-----KKRRIINDDQRRQI 452
            +L  +  E          +    V +  A  +    R        +K   I ++   + 
Sbjct: 559 LVLQRKTDEQIALEDAAGRKNDYNVFMAVANHIGHDKRGNKTYVRDRKGNEIVEE-IEED 617

Query: 453 LDIYVSRE 460
              Y+  +
Sbjct: 618 TKEYIDGQ 625


>gi|168333674|ref|ZP_02691929.1| type I restriction-modification system, M subunit, putative
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 604

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 129/358 (36%), Gaps = 56/358 (15%)

Query: 111 AKAIFEDFDFSST----IARLEKAGLLYKICKN-FSGIE--LHPDTVPDRVMSNIYEHLI 163
            K IF     +      I  L K  L  +  K  F+ I       T     ++ ++  + 
Sbjct: 56  LKEIFHSVAMNEFLRLPIQYLSKTNLNNETIKKIFTDINHWKLNKTQYTEAINYVFTII- 114

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
                        + TP  +  L   LL             +  T Y  T G    +  A
Sbjct: 115 -------ERTLPIYSTPSYINELLIKLL-----------EPIGGTFYSGTLGIASTMIMA 156

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             + A  G+  +        GQE+  + +A+ V  + +  +        S +I     L+
Sbjct: 157 YQYAAYLGNTLE------IXGQEINLQIYALAVIRLYVNGI-------SSHHILASDMLT 203

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
             +     F Y   +PP   +W+  +  +           +  G P+++           
Sbjct: 204 SPIINN--FDYIAIHPPANIEWKDKQSQIIDRPDL-----YSFGFPQVTTSDW----LFL 252

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           +      N  G+A ++     LF       E ++R  ++  D IEAI+ LP  +   ++ 
Sbjct: 253 SLALKLLNKTGKAVVLTPVGSLFRTGM---EEKLRTRIIYCDYIEAIIELPERIVTNSST 309

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              + I +  K+ + +  +Q I+AT L+ S +     +R ++ D   +I++IY S+ +
Sbjct: 310 NFAIIIFNKNKSIKLKNSIQFIDATXLYESQKRA---KRALSIDNINEIVNIYKSQTD 364


>gi|86141515|ref|ZP_01060061.1| putative DNA restriction-modification system, DNA methylase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832074|gb|EAQ50529.1| putative DNA restriction-modification system, DNA methylase
           [Leeuwenhoekiella blandensis MED217]
          Length = 816

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 111/310 (35%), Gaps = 56/310 (18%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L ++    +   +  + + DR    I++ L+ R      + + +F+ P ++      +
Sbjct: 92  ERLNEVLHQLT---MFNNEILDRYFDEIFDDLLFRLADNQGKYSGEFLLPNEISKFVVEI 148

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
              P+            ++++P  G   F T                     +GQE+   
Sbjct: 149 ADMPN----------WASVFNPFAGLASFATHL-------------NKNQNYYGQEIVSS 185

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           T A+ +  ++         +    N +   ++         F   +SNPPF  K      
Sbjct: 186 TWALGMLRLM------RLHKHTQINYRVEDSIHN-WPGTNNFDLIISNPPFNYKI----- 233

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                +     GR            M    ++  K     N  G+ A ++S   LF G  
Sbjct: 234 ---DPYIAHYFGRKK----------MTAETYVICKGLESINFDGKVACIVSQGMLFRG-- 278

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            S +  +R  L+E  LIE IV+LP+ +   T I   + IL+ +K   R   +++I+A+  
Sbjct: 279 -SDDQRLRESLVEQGLIETIVSLPSGMLKHTGIPICIMILTRKKNINRT--IKMIDASSF 335

Query: 431 WTSIRNEGKK 440
             S     K+
Sbjct: 336 VESKGKREKR 345


>gi|327390239|gb|EGE88582.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375]
 gi|332202745|gb|EGJ16814.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 284

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 36/219 (16%)

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYEH 161
           +FS   +     F   +  A L+KA     I   F      ++   D      + +IYE+
Sbjct: 70  AFSRYMREAI--FQI-NKPATLQKA---ISILDVFPTRGLDVDFDNDKQSITDIGDIYEY 123

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+ +  +        F TPR ++ +   L+      +            DP  G+ GFL 
Sbjct: 124 LLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGSAGFLV 171

Query: 222 DAMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
            A  ++                    + HG + +     +    M++  +E       + 
Sbjct: 172 SASRYLKRKKDEWETNTDNINHFHNQMFHGNDTDTTMLRLGAMNMMLHGVE-------NP 224

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
            I    +LS+D     ++   L+NPPF    + +  + +
Sbjct: 225 QISYLDSLSQDNEEADKYTLVLANPPFKGSLDYNSTSND 263


>gi|225164186|ref|ZP_03726462.1| N-6 DNA methylase [Opitutaceae bacterium TAV2]
 gi|224801195|gb|EEG19515.1| N-6 DNA methylase [Opitutaceae bacterium TAV2]
          Length = 651

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 126/366 (34%), Gaps = 82/366 (22%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                V    YE ++    S +     +F TPR++  +A A+L           PG  + 
Sbjct: 283 ESDVDVKGRAYEEIVG---SNLRGDRGEFFTPRNICQMAIAML----------DPGEHQL 329

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------------------ILVPHGQELE 248
           + DP CGTGGFL  AMNHV +     ++                           G +  
Sbjct: 330 ILDPCCGTGGFLITAMNHVIEKIRDAEVKKWKGKPERALEPIRARIQKFASKFIAGIDFN 389

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---------KRFHYCLSNP 299
           PE        M++         D +  + Q ++L                 +     +NP
Sbjct: 390 PELVKASKMNMVMNN-------DGAGGLFQANSLENPAVWSSDLRARNLMGKVDLLFTNP 442

Query: 300 PFGKKWEKDKDAVEKEHKNGEL-------GRF--GPGLPKISDGSMLFLMHLANKLELPP 350
           PFG K      A+ +++  G          R+    G  K     +LF+      L    
Sbjct: 443 PFGSKIPITDPAILEQYDLGHAWSYDKTSDRWMMQAGTVKSQPPEILFIERCVKFLRS-- 500

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
             GGR AIVL    L       G   +R W+L +  I A + L  D F    +I T + +
Sbjct: 501 --GGRCAIVLPDGIL----GSPGLGYVREWILRHARILASIDLHPDTFQPLVSIQTSVLV 554

Query: 410 LSNRKT-----EERRGK-----VQLINATDLWTSIRNEGKK---RRIINDDQRRQILDIY 456
           L  +       E+  GK     V +  A  +    R  G K   R     +  R+++   
Sbjct: 555 LERKDQQLVAIEQAAGKLNDYCVFMAVANHIGHDKR--GNKTYVRNKDGSELVRELVRSV 612

Query: 457 VSRENG 462
           +  ENG
Sbjct: 613 LEYENG 618


>gi|319757929|gb|ADV69871.1| putative HsdM [Streptococcus suis JS14]
          Length = 240

 Score =  107 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/189 (24%), Positives = 93/189 (49%), Gaps = 20/189 (10%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-------MLFLMHLAN 344
             Y +SNPPF   + + +D V  E       RF  G+PKI +          LF+ H+ +
Sbjct: 1   MDYIVSNPPFKLDFSEWRDQV--ESLPNSSERFFAGVPKIPNKKKESMAIYQLFIQHIIH 58

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G+AAIVL +   F       + +IR+ L++  ++  +V++P+++F  T   
Sbjct: 59  SLKED----GQAAIVLPTG--FITAQSGIDKKIRQHLVDEKMLAGVVSMPSNIFATTGTN 112

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK- 463
             +  +  +     +  V LI+A++L T ++    ++ +++ D+  QI+  ++++E  + 
Sbjct: 113 VSILFIDKK----NKDDVVLIDASNLGTKVKEGKNQKTVLSPDEESQIIQTFINKEVVED 168

Query: 464 FSRMLDYRT 472
           FS  + Y  
Sbjct: 169 FSVKVSYEE 177


>gi|289811268|ref|ZP_06541897.1| DNA methylase M, host modification [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 202

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 39/203 (19%)

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I+ G+TL  D     +     +NPPFG     +                   +   S+  
Sbjct: 10  IRLGNTLGSDGENLPQADIVATNPPFGSAAGTNITRTF--------------VHPTSNKQ 55

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F+ H+   L      GGRAA+V+  + LF         EIRR L++   +  I+ LPT
Sbjct: 56  LCFMQHIIETLRP----GGRAAVVVPDNVLF----DRVGLEIRRDLMDKCHLHTILRLPT 107

Query: 396 DLFFRTNIATYLWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
            +F+   + T +   +        + ++    V + +     T++   G KR    +   
Sbjct: 108 GIFYAQGVKTNVLFFTKGTVANPTQDKDCTDDVWVYDLR---TNMPRFG-KRTPFTEQYL 163

Query: 450 RQILDIYVS-------RENGKFS 465
           +    +Y         R  G++S
Sbjct: 164 QPFETVYGEDPHGLSPRAEGEWS 186


>gi|149391960|emb|CAL68657.1| restriction-modification enzyme [Pseudomonas putida]
          Length = 1289

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 81/468 (17%), Positives = 157/468 (33%), Gaps = 41/468 (8%)

Query: 112 KAIFEDFDF---SSTIARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           +  F + DF        RL  + A +L K+ + +  I L      ++ + +++E  + + 
Sbjct: 355 QKFFTNNDFSFIDVHNERLFYQNADVLLKLLQMWQDIRLTNANGHNQFLGDMFEGFLDQ- 413

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              V +    F TP  +      L+  P ++L +++P     + D  CG G FLT+    
Sbjct: 414 --GVKQSEGQFFTPMPICRFI--LMSLPLESLVRDNPTPPMAI-DYACGAGHFLTELALQ 468

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ--QGSTL-- 282
           +      HK       + +        +     L +  +        + IQ   G  L  
Sbjct: 469 LQPLLEQHKPQANPAEYHKS----MVGIEKEYRLSKVAKVSAFMYGQQGIQVCYGDGLVN 524

Query: 283 SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSML- 337
           S + F   R   F   ++NPP+  +   +    E+        R    L    +D     
Sbjct: 525 SHEAFPDIRDGHFDLLVANPPYSVRGFLETLPEEE--------RKAYSLADTINDAETAN 576

Query: 338 -FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
                   + +     GG AAI+L S+ L NG   S  +  R  LL+   I AI    + 
Sbjct: 577 SIETFFVERAKQLLKSGGVAAIILPSAILSNGG--STYTRAREILLQYFDIVAIAEFGSG 634

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            F +T   T    L  + T+    +       + +       +K+    D    +    +
Sbjct: 635 TFGKTGTNTVTLFLRRKPTQPDTAEHCRERVEEWFKGCAASKRKQATYKDGHLIEQYCAH 694

Query: 457 VSRENGKFSRMLDYRTFGYRRIKV-LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
           ++     +  +L     G  + +   +P    F      L  L     ++ L+   Q+  
Sbjct: 695 INVPLADYQSLLRGEAEGSWKQQEHFQPYHDKFDKSTE-LVNLRKQKKFKALNKAEQAA- 752

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTL--KVKASKSFIVAFI 561
            +I K  +  +      + +            L  +  +    I  F+
Sbjct: 753 -EIAKRYLGYVQTIERDKLYHFCLASDQTNPVLIIRSPSGTKEIKQFL 799


>gi|67459800|ref|YP_247423.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67459869|ref|YP_247491.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005333|gb|AAY62258.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005402|gb|AAY62326.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
          Length = 332

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 91/264 (34%), Gaps = 58/264 (21%)

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I  L K  +L  I       +LH       +  + +E+ +R +G        ++ TPR +
Sbjct: 4   IETLVKPSILNTIVAKLD--DLHLSATHSDIKGDAFEYFLRNYG-GADTDFGEYFTPRHI 60

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-----GSHHKIPP 238
           V     LL           P     +YDP CGTGG L  +  H+ D        + +   
Sbjct: 61  VTALVNLL----------DPKFGEKVYDPFCGTGGMLITSYKHIYDNLSLRTPENIQRLK 110

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-----------SKDLF 287
               +G E+    + +    M++         D   NI + ++             KD F
Sbjct: 111 KQTVYGGEITK-MYRIAKMNMILAG-------DGHSNIVRQNSYGTPDTIKQIDVIKDGF 162

Query: 288 TGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             K     ++   +SN PFG+K + +   +      G   R            +  ++H 
Sbjct: 163 VTKENIKIKYDVVISNMPFGRKMKTEHAGL-----YGFNTR---------SAEITGVLHC 208

Query: 343 ANKLELPPNGGGRAAIVLSSSPLF 366
            N L    N   R  +++    LF
Sbjct: 209 LNSLNNNENA--RLGLIVPEGILF 230


>gi|332366262|gb|EGJ44017.1| restriction enzyme BgcI subunit alpha [Streptococcus sanguinis
           SK355]
          Length = 654

 Score =  106 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 74/491 (15%), Positives = 156/491 (31%), Gaps = 120/491 (24%)

Query: 39  TLLRRLECAL--EPTRSAVREKYLA---FGGSNIDLESFVKVAGYSFYNTSEY-SLSTLG 92
            +++RL   L  E  +    E+Y      G  ++  E    +   ++    +  +   LG
Sbjct: 147 LVIKRLSDVLSFENFKEENIEEYYKVSVLGELSLYQEELKNINEIAYSIHEDLRNYGNLG 206

Query: 93  STN-------------------------------------TRNNLESYIASFSDNAKAIF 115
           + N                                       + L +     S    ++ 
Sbjct: 207 ADNKATVVSAILLALRHGLTANQLTGGVDSSSDGNTIFRAIEDELNNLYQVRSKKIGSLL 266

Query: 116 EDFDF-------SSTIARLEKAGLLYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRF 166
           + F F       ++ +  L     L+      S    H      P  ++ + Y   + ++
Sbjct: 267 DTFRFITTDVRLNTKLTELGNRTPLWYFTDRLSNEVYHRVVGGTPFDILGSFYSEFV-KY 325

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           G          +TP ++  L   L+                T+ DP  GTG FL  +M  
Sbjct: 326 GGNDGSDLGIVLTPLNITSLMADLIEI----------SPTDTVIDPATGTGAFLIASMQK 375

Query: 227 VADCGSHHKIPPI--------------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           + +      +                    +G EL+ + +A+    M++R        D 
Sbjct: 376 MIEQVEKDDVNYKTSEAKKQAIKKIKSDRLYGIELKSKLYAISATNMILRN-------DG 428

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             ++++G      L     F   L NPP+ +   K    +                    
Sbjct: 429 RAHLEEGDMFHLSLENDGNFDKLLMNPPYSQAKTKVTSHLS------------------- 469

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR---RWLLENDLIEA 389
              M F++    +L+     GGRAA ++  S + +G     +++ R   + LL+N+ I A
Sbjct: 470 --EMNFMIKALGRLK----CGGRAAFIVPQSTMTSGPKAIKDADYRELKQELLDNNRIIA 523

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG--------KKR 441
           ++ +    F+    +  + +L +   ++    +      D      + G        +KR
Sbjct: 524 VITMNPKTFYPYGTSPVVIVLEHGVPQKDSRSILYDFRDDGNILNPHLGMLEDATATEKR 583

Query: 442 RIINDDQRRQI 452
           + + D  + +I
Sbjct: 584 KRLLDTIKDKI 594


>gi|320087560|emb|CBY97324.1| type I site-specific deoxyribonuclease [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 130

 Score =  106 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G  AIVL    LF G A   E  IRR  LE+  I+ ++ LP +LFF T I   + +L   
Sbjct: 15  GTMAIVLPHGVLFRGGA---EERIRRKRLEDGNIDTVIGLPANLFFSTGIPVCILVLKKC 71

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR-ENGKFSRMLDYRT 472
           K       V  INA++ +      GK++  +N +   +I+D Y  R E  ++SR +    
Sbjct: 72  KKP---DDVLFINASEYFEK----GKRQNRLNKEHISKIVDTYQFRKEEDRYSRRVPLEE 124


>gi|322392569|ref|ZP_08066029.1| restriction enzyme BgcI subunit alpha [Streptococcus peroris ATCC
           700780]
 gi|321144561|gb|EFX39962.1| restriction enzyme BgcI subunit alpha [Streptococcus peroris ATCC
           700780]
          Length = 660

 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 128/386 (33%), Gaps = 65/386 (16%)

Query: 95  NTRNNLESYIASFSDNAKA--IFEDFDFSSTIARL-EKAGLLYKI-CKNFSGI------- 143
             + NL+    + S   K   +   F       ++ EK   L K   K+F+         
Sbjct: 240 AIKANLQRA--NVSPEVKKDKLLSQFAIIKDDVKINEKNANLGKTPIKHFTEFLYKSIYQ 297

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            L  ++  +  +   Y   +  +     +     +TP+ +  L   L+            
Sbjct: 298 SLRYNSSAEDYLGRFYGEFMS-YSGGDGQNLGIVLTPKHITELFCDLV----------DL 346

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                ++DPTCGT GFL  AM+ +    +  S           G E +     +    M+
Sbjct: 347 KPTDKVFDPTCGTAGFLIAAMHDMLTKAENDSQRDQIRKHQLFGIEEQSYMFTIATTNMI 406

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +R        D   N++    L ++      K+ +  + NPP+      + +  E     
Sbjct: 407 LRG-------DGKSNLENQDFLRQNPSKLQLKQCNVGMMNPPYSMGSTANTELYEINFTE 459

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                                      L      G +A +++  S  F G     E E +
Sbjct: 460 --------------------------HLLNSLVEGAKAVVIVPQST-FTG-KTKFEKEAK 491

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNE 437
           + +L++  +E ++ L  + F+       + + +         + + IN   D +   ++ 
Sbjct: 492 QNILKHHTLEGVITLNKNTFYGVGTNPCIAVFTAGIPHRLEKECKFINFENDGFEVSKHI 551

Query: 438 GKKRRIINDDQRRQILDIYVSRENGK 463
           G        D+++ +LD++  R   +
Sbjct: 552 GLVETATAKDKKQHLLDVWFDRTEAE 577


>gi|269126154|ref|YP_003299524.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268311112|gb|ACY97486.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 673

 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 48/292 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E L  R+        ++  TP  VV L   L               I T+ DPTCG+G
Sbjct: 163 AFEFLRERYLDLHKRRTQE--TPPQVVRLVAELAG-----------PRIETVLDPTCGSG 209

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            FL   +                   GQ+++     +    + +   ++D        I+
Sbjct: 210 AFLAGMLA----------KGTRRRLLGQDVDEAVARLTAIWLALLDADAD--------IR 251

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L +D F G++    ++NP F  +            +     R+  GLP  ++  + 
Sbjct: 252 SGDSLRRDAFPGEQADLVVANPQFNDRNWGYD-------ELTTDPRWEYGLPPRTESELA 304

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H           GG A +++  +           +     LL    + A++ LP   
Sbjct: 305 WVQHCLAHCRP----GGLAVLLMPPAAASRRAGRRIRAN----LLRRGALRAVITLPLGA 356

Query: 398 FFRTNIATYLWILSNRKTEE-RRGKVQLINATDLWT-SIRNEGKKRRIINDD 447
              T +   +W+L     +E    +V +++ +      +   G+  R   DD
Sbjct: 357 VPNTAVPLTVWVLRRPVPDERPPSQVLMVDTSRSGEGFVETAGRLWRRFTDD 408


>gi|320535517|ref|ZP_08035619.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320147640|gb|EFW39154.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 659

 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 141/414 (34%), Gaps = 86/414 (20%)

Query: 89  STLGSTNTR-NNLESYIASFSD----NAKAIFEDFDFSSTIARL-----EKAGLLYKICK 138
             L     R   ++  ++SFS+    N +   E  D    + +L          ++    
Sbjct: 250 EYLKQKQIRQEKIDLMLSSFSEISKDNQRD--EPTDVDKLVGKLLEKEASTNKQIFTYI- 306

Query: 139 NFSGIELHPDTVPDR--VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            F+ I L  D +     +M  +Y   + ++     +     +TP  V  +   +L    D
Sbjct: 307 -FNNIYLSIDAMAGHLDIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAEILNVNKD 364

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHG 244
           +             D   G+ GFL  +M  + D                 +        G
Sbjct: 365 SRT----------MDLATGSAGFLISSMEIMIDDTNKTFGKDTSKANKKIEEIKKEQLLG 414

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFG 302
            EL  E   +    M++R        D S NI++G+T       +T  + +  L NPPF 
Sbjct: 415 VELNAEMFTLAATNMILRG-------DGSSNIRKGNTFRTPEELYTNFKANRLLLNPPFS 467

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            +                               M F+    +K+E     GG AAI++  
Sbjct: 468 FEENG----------------------------MPFIKFGLSKMEK----GGLAAIIIQD 495

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421
           S   +GRA S      + +L+ + + A + +P DLF     + T ++I       +    
Sbjct: 496 SAG-SGRAISSN----QEILKKNTLLASIKMPVDLFIPMAGVQTSIYIFEAGTPHDYEKT 550

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           V+ I+  +        G        ++ + I+ +Y + ++ K ++ L      Y
Sbjct: 551 VKFIDFRNDGYKRTKRGLNEVDSPTERYQDIIKLYKAGKSAKVNKNLWNIDEIY 604


>gi|320536513|ref|ZP_08036543.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320146639|gb|EFW38225.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 674

 Score =  106 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 133/405 (32%), Gaps = 72/405 (17%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAI-----FEDFDFSSTIARLEKAGLLYKI--- 136
            + ++ L     + + +    +  DN          +     +  A ++    + ++   
Sbjct: 217 NFDINNLIGDKKKTDGQKIYNAIKDNLARANVSPEVKKDKLLTQFAVIKDTAKINEVNVG 276

Query: 137 -----CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-------SEGAEDFMTPRDVV 184
                 K+++   L+     +   +   E  + RF  E         +     +TPR + 
Sbjct: 277 LGKTPLKHYTEF-LYKSIYQNIRYNTSAEDFLGRFYGEFMSYSGGDGQALGIILTPRHIT 335

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILV 241
            L   L                  ++DP CGT GFL  AM+++                 
Sbjct: 336 ELFCNL----------ADLKPNDKVFDPCCGTAGFLIAAMHNMLLKAKTLDEKNDIKKKQ 385

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNP 299
             G E++     +    M++R        D   N+     L+++ F  ++  +   + NP
Sbjct: 386 LFGIEIQSYMFTIATTNMILRG-------DGKSNLYNKDFLNENPFDLQKEGYTVGMMNP 438

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+ +  +++ D                          L+ +     L      GG+  ++
Sbjct: 439 PYSQGSKQNPD--------------------------LYEIAFTEHLLNSVTEGGKVIVI 472

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           +  S +      + E  I+  +L+   +E ++ L  + F+       + I +        
Sbjct: 473 VPQSSM--TGKTTEEKNIKTNILKKHTLEGVITLNKNTFYGVGTNPCIAIFTAHIPHSEN 530

Query: 420 GKVQLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IN  D  +   ++ G        D+++ +LD++  R +  
Sbjct: 531 KVCKFINFEDDGYEVAKHIGLVDNGSAKDKKQHLLDVWFDRTDAP 575


>gi|325848783|ref|ZP_08170293.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480427|gb|EGC83489.1| N-6 DNA Methylase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 703

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 143/419 (34%), Gaps = 76/419 (18%)

Query: 38  FTLLRRLECALEPTRSA--------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
             L + L      +  +         +E+Y     S  D +   K            ++ 
Sbjct: 199 LFLFKYLSDIGVLSGDSSFFYIANMYKEEYKKIDPSINDAKVLGKYLDGP-----RETMK 253

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD- 148
           TL       +  S I     + K      +++  I+      +  ++   F   E     
Sbjct: 254 TLFPE--GEDGTSIINGQVFHVK----KDEYNQYISLDNTDKIFKEVVLEFENYEKENGK 307

Query: 149 --TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
              +     S ++E  ++   S+       F TP  +V+    ++               
Sbjct: 308 FIHISTDFKSKLFETFMKH--SDEKSNMGQFFTPLKIVNEMIEMVDI----------YEG 355

Query: 207 RTLYDPTCGTGGFLTDA-----MNHVADCGSHHKIPPILVPHGQEL---EPETHAVCVAG 258
            ++ DP CG G F+ +A       +        +    ++ + + +   +  T  +  A 
Sbjct: 356 MSICDPACGVGKFILEAIEDKISEYFTYKKKKLEKRIEIIGYDKMMSERDDLTIILAKAN 415

Query: 259 MLIRRLESDPRRDLSKNIQQGS-TLSKDLF---------------TGKRFHYCLSNPPFG 302
           MLI   E   + +  ++++  S +L  D +                  ++   L+NPP+ 
Sbjct: 416 MLIYFSELFKKNNSLQDVKTISQSLLNDSYYLHQTMLGTLGVGELEENKYDLILANPPYY 475

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +     + A +     G     G G+        LFL  +   L+     GG A +VL  
Sbjct: 476 QSKVMMEAAKD----TGYYDLNGAGV------ESLFLEWILKSLKP----GGTANVVLPD 521

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
             +F+  A S   +++ ++L N  IEAI++LP   FF T   TY+  +      E+   
Sbjct: 522 G-IFSNYANS---KLKEYMLNNFFIEAIISLPVGAFFNTPKKTYILTVRKATEREKEDN 576


>gi|320010361|gb|ADW05211.1| N-6 DNA methylase [Streptomyces flavogriseus ATCC 33331]
          Length = 702

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/359 (18%), Positives = 118/359 (32%), Gaps = 36/359 (10%)

Query: 166 FGSEVSEGAEDF-MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           FG ++      + +TP  +  L   L     D + +      RT+ DP  GTG  L    
Sbjct: 171 FGRQLDANPRQYTLTPPGLAELMADLAQPAGDTVRRGGGSDSRTVLDPAAGTGALLCAVG 230

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR--RLESDPRRDLSKNIQQGSTL 282
                             + QE +P   A+    + +      +D     +   + G TL
Sbjct: 231 -------------RPTALYAQEADPGLSALTALRLALHTQGSGADAPTLTA---RTGDTL 274

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D F G      L +PPF ++     D            R+  G P  ++  + ++ H 
Sbjct: 275 RTDAFPGLTVDTVLCHPPFNERNWGHDD-------LAYDPRWEYGFPARTESELAWVQHA 327

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L      GG A +++  +        SG   IR  LL    + A++ALP        
Sbjct: 328 LAHLRE----GGTAVVLMPPAAASR---RSG-RRIRADLLRRGALRAVIALPAGAAPPYG 379

Query: 403 IATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           I  ++W+L           ++ +++A +   S    G+ R       R  +LD +   + 
Sbjct: 380 IPLHIWVLRKPGAGRPPAPELLVVDAAESEASGAPAGRDRLDW-PAVRGAVLDAWTPFDA 438

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                 ++ R    R + V+  L     L         A           +    D L+
Sbjct: 439 PGRREPVEERPGTSRAVPVIELLDDDVDLAPARHLPPPATGGDAAELARVRERLDDTLR 497


>gi|254669507|emb|CBA03431.1| type I restriction enzyme M protein [Neisseria meningitidis
           alpha153]
          Length = 146

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 10/131 (7%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +G   FL+HL   L+      G+ AI+L    LF G A   E+ IR  LL  DLI
Sbjct: 18  IPPEKNGDYAFLLHLLKSLKPS----GKGAIILPHGVLFRGNA---EARIRTELLNLDLI 70

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           + I+ LP +LF+ T I   + ++   K   +  +        + +    +G K R + + 
Sbjct: 71  KGIIGLPANLFYGTGIPACIIVID--KEHAQTAQFAEEGTNQVISGGIKDGNKNR-LREQ 127

Query: 448 QRRQILDIYVS 458
              +I+D + +
Sbjct: 128 DIHKIIDTFTN 138


>gi|239988283|ref|ZP_04708947.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 11379]
          Length = 769

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 92/280 (32%), Gaps = 33/280 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R            +TP  +  L   L   P  A        +R++ DP  G
Sbjct: 209 GQAFEFLLGRQLDANPRQYT--LTPPQLAELMADLAEPPKGADRAARERPVRSVLDPAAG 266

Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           TG  L      A  +  +          L        P   A           +   R  
Sbjct: 267 TGALLRAVGGPATLYAQEADPGLAALTALRLALAAEGPRRAA-----------DGTHRAA 315

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               ++ G TL  D F        L +PPF ++            +     R+  GLP  
Sbjct: 316 PGPVVRTGDTLRADAFPELAADTVLCHPPFNERNWGHD-------ELAYDPRWEYGLPAR 368

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           ++  + ++ H+  +L      GG A +++  +        SG   IR  LL    + A++
Sbjct: 369 TESELAWVQHVLARLRD----GGTAVLLMPPAAASR---RSG-RRIRAGLLRRGALRAVI 420

Query: 392 ALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430
           ALP        +  +LWIL   +        + L +  DL
Sbjct: 421 ALPAGAAPPYGVPLHLWILCKPEPGVRPAADLLLADTADL 460


>gi|307290562|ref|ZP_07570473.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498383|gb|EFM67889.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 194

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 15/184 (8%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 1   LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 53

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 54  GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 106

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 107 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 166

Query: 519 LKPM 522
           L+ +
Sbjct: 167 LEAI 170


>gi|307290732|ref|ZP_07570633.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306498212|gb|EFM67728.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
          Length = 193

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 15/184 (8%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +H    L+      G  AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF
Sbjct: 1   LHGFYHLKET----GTMAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFF 53

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            T+I T + +L   +       V  I+A+  +      GK +  ++++  ++IL+ Y  R
Sbjct: 54  GTSIPTTVIVLKKNRQTR---DVLFIDASREFVK----GKNQNKLSEENIQKILETYAER 106

Query: 460 ENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           ++ + ++ +  +         +  P  +    ++  +  +      +K+    Q    ++
Sbjct: 107 KDVEKYAHLATFDEIKENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKEL 166

Query: 519 LKPM 522
           L+ +
Sbjct: 167 LEAI 170


>gi|239941823|ref|ZP_04693760.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
 gi|291445270|ref|ZP_06584660.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
 gi|291348217|gb|EFE75121.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces roseosporus NRRL 15998]
          Length = 769

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 92/280 (32%), Gaps = 33/280 (11%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R            +TP  +  L   L   P  A        +R++ DP  G
Sbjct: 209 GQAFEFLLGRQLDANPRQYT--LTPPQLAELMADLAEPPKGADRAARERPVRSVLDPAAG 266

Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           TG  L      A  +  +          L        P   A           +   R  
Sbjct: 267 TGALLRAVGGPATLYAQEADPGLAALTALRLALAAEGPRRAA-----------DGTHRAA 315

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               ++ G TL  D F        L +PPF ++            +     R+  GLP  
Sbjct: 316 PGPVVRTGDTLRADAFPELAADTVLCHPPFNERNWGHD-------ELAYDPRWEYGLPAR 368

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           ++  + ++ H+  +L      GG A +++  +        SG   IR  LL    + A++
Sbjct: 369 TESELAWVQHVLARLRD----GGTAVLLMPPAAASR---RSG-RRIRAGLLRRGALRAVI 420

Query: 392 ALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINATDL 430
           ALP        +  +LWIL   +        + L +  DL
Sbjct: 421 ALPAGAAPPYGVPLHLWILCKPEPGVRPVADLLLADTADL 460


>gi|308272577|emb|CBX29181.1| Probable type I restriction enzyme BthVORF4518P M protein
           [uncultured Desulfobacterium sp.]
          Length = 272

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 102/291 (35%), Gaps = 27/291 (9%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M +  +           I    +L  D  TG R  Y L+NPPFGKK        + E 
Sbjct: 1   MNMFLHNIGDIDSETF---ILPTDSLVAD--TGLRVDYVLTNPPFGKKSSMTFTNEKGEQ 55

Query: 317 KNGE--LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           +  +    R        S+  + F+ H+   L+     GG+AA+VL  + LF G AG   
Sbjct: 56  EKEDLTYNRQDFWAT-TSNKQLNFVQHIRTMLKT----GGKAAVVLPDNVLFEGGAG--- 107

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE--RRGKVQLINATDLWT 432
             +R+ LLE   +  I+ LPT +F+   +   +    N+   +     +V + +    + 
Sbjct: 108 ETVRKKLLETTDLHTILRLPTGIFYAQGVKANVLFFDNKPASKDPWTSEVWIYD----YR 163

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
           +      K+  +  +   + ++ Y +            +   +  I      R     + 
Sbjct: 164 TNIRHTLKKSPLKLEDLAEFIEYYNAG------NRHKRKETWHEEINPEGRWRKFTYDEI 217

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
               +   DITW K   L     L     +   I     A     + I  N
Sbjct: 218 VNRDKTSLDITWLKDKSLADLDNLPDPDLLANDIIENLEAAVESFKEIMLN 268


>gi|126665393|ref|ZP_01736375.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
 gi|126630021|gb|EBA00637.1| Type I site-specific deoxyribonuclease HsdM [Marinobacter sp.
           ELB17]
          Length = 214

 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/213 (23%), Positives = 84/213 (39%), Gaps = 33/213 (15%)

Query: 309 KDAVEKEHKNGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           K     +       RF P   L   S     F++H  + L       GRAAIV      +
Sbjct: 2   KWIGSDDPTLINDDRFAPAGVLAPKSKADFAFVLHALSYLSSK----GRAAIVCFPGIFY 57

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            G A   E +IR++L++N+ +E +++L  +LFF T IA  + +LS  K +      Q I+
Sbjct: 58  RGGA---EQKIRQYLVDNNYVETVISLAPNLFFGTTIAVTILVLSKHKIDTTT---QFID 111

Query: 427 ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF---SRMLDY------------- 470
           A+ L+    N       + D    QI+ ++ S+ N +    S   +              
Sbjct: 112 ASGLFKKDTNT----NTLTDAHIEQIMQVFDSKANAEHLAQSIPFETIAANDYNLSVSSY 167

Query: 471 -RTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
                 R +  +  L     +  T + +L  DI
Sbjct: 168 VEAKDNREVTDITTLNAELKITVTKIDQLRKDI 200


>gi|71897759|ref|ZP_00679985.1| N-6 DNA methylase [Xylella fastidiosa Ann-1]
 gi|71732314|gb|EAO34368.1| N-6 DNA methylase [Xylella fastidiosa Ann-1]
          Length = 222

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 12/148 (8%)

Query: 317 KNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +     RF   G      G+  +L H    L       GRAA+VL +  +        E 
Sbjct: 11  RQRPFDRFRTAGGITSGKGNWEWLQHTLACLHDH----GRAAVVLDTGAVTRSSGSKNED 66

Query: 376 E---IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
           +   IR+W ++ DLI+ ++ LP +LF+ T  A  + +L+ RK+  R+ K+ L+NA+  + 
Sbjct: 67  KERSIRKWFVDQDLIDGVILLPENLFYNTTAAGVIVVLNKRKSAARKDKIVLLNASRRY- 125

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRE 460
               +GK +  + ++  + +  +Y+  E
Sbjct: 126 ---KKGKPKNYLPEEDVQSLAAMYLKGE 150


>gi|297561676|ref|YP_003680650.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846124|gb|ADH68144.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 626

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 104/284 (36%), Gaps = 53/284 (18%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++E L  R   E         T  ++      L             G   ++ DP CGTG
Sbjct: 136 VFEELCARLARERGRAE----TSPELAAWMAELAGI----------GAGSSVLDPACGTG 181

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNI 276
             L+ A+               L   GQ+ +P+   +  A +++   + +          
Sbjct: 182 VLLSAALRR-----------GALTVFGQDRDPDALDIATALLVVPHGVSAT--------- 221

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            +G +L    F   R    L +PPF  +    +D V+         R+  GLP   +G +
Sbjct: 222 AKGDSLRSPAFESSRVDVVLCDPPFRDREWGYEDLVD-------DPRWVHGLPPRGEGEL 274

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H  +++      GGRA ++L +S  +      G   IR  LL +  + A++ +P  
Sbjct: 275 AWVQHCLSRVRP----GGRAVVLLPASVAYR----PGGRRIRANLLRSGALRAVLEVPGG 326

Query: 397 LFFRTNIATYLWILSNRKTEERRGK-VQLINATDLWTSIRNEGK 439
                    ++W+L   +     G  V L+ + +   + R  G 
Sbjct: 327 --AGAEPGRHVWVLVRPEESHGTGDGVLLVASAEASEASRVWGD 368


>gi|313676045|ref|YP_004054041.1| n-6 DNA methylase [Marivirga tractuosa DSM 4126]
 gi|312942743|gb|ADR21933.1| N-6 DNA methylase [Marivirga tractuosa DSM 4126]
          Length = 620

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 116/356 (32%), Gaps = 61/356 (17%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            N K  F  F       +L+   +LY +   F  I++     P  ++ + ++ L+     
Sbjct: 73  PNIKDHFGSF-------QLDDISVLYAL-NKFQEIDI--SNSPAHIIGDAFQTLVG---P 119

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
            +      F TP+ VV     LL          SP    T+ DP CGT GFL +++  ++
Sbjct: 120 NLRGDKGQFFTPKSVVSSMVKLL----------SPKANHTICDPACGTAGFLIESITQIS 169

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                                    +     L     +        N +  ++ S D+  
Sbjct: 170 KNI--------------SFNGRLIGIEKDDFLANTANAILEIYSKSNFEVINSNSLDIEN 215

Query: 289 GK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---------LPKISD 333
            K      +    ++NPPFG K    +  + K++  G    F            + K   
Sbjct: 216 DKLKKLLGQIDLVVTNPPFGAKIGVKEKKILKQYDFGHSWMFSKTESQWIKTSQILKEQS 275

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LFL      L+     GG+  IVL      N   G     IR     N  I  ++  
Sbjct: 276 PQLLFLELCFKLLKK----GGKCGIVLPEGIFGNKSLGYVWDYIR----NNGKILGMIDC 327

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           P  LF   T++ T +           + KV +          R      + I+DD 
Sbjct: 328 PRTLFQPSTDVKTNILFFEKSSNTSTKFKVAIAETCGHDKRGRQLDNSGKKIDDDF 383


>gi|21233564|ref|NP_639481.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770530|ref|YP_245292.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21115424|gb|AAM43363.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575862|gb|AAY51272.1| XmnI methyltransferase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 487

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 151/493 (30%), Gaps = 93/493 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLE--------SFVKVAGYSFYNTSEYSLS 89
              ++ L            E   +     I+          +          N       
Sbjct: 6   LIFIKLLSDR--EVHEKNPEMAESGVFQVIEPARNVKFSVAAINAAEEAGIDNPIAVRFD 63

Query: 90  TLGST---NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
            L  +     +   +  I  FS+N K           + RLE A  LY +          
Sbjct: 64  ELRESLELQIKQQNKKRI--FSENEKLALSKDLTKDIVRRLESAD-LYGL---------- 110

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +   ++E  +    +   +    + TPR VV LA A+     D          
Sbjct: 111 ----DADINGRLFETFL--NATLRGKSLGQYFTPRSVVKLAVAM----SDLQVGIKHQGC 160

Query: 207 RTLYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQE--LEPETH 252
             + D  CG+GGFL +A+  +            A              +G +   +P   
Sbjct: 161 DVVIDGCCGSGGFLIEALAAMWKKVESSPKLSQAAKNELKNDIATKCIYGIDSAKDPALA 220

Query: 253 AVCVAGMLIRR-----------------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            +    M +                    E++   +    ++    + KD   G      
Sbjct: 221 RIARMNMYLHGDGGSAIYQLDALDKGLAEENNASPESRSELRDFKRVLKDNAEGFA-DVA 279

Query: 296 LSNPPFGKKWEKDKD--------AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           L+NPPF + +E+ K         +V   ++    G            S +FL    + L+
Sbjct: 280 LTNPPFARDYERKKRGGGRAYAPSVLDAYELSYDGPAEILPKAKLKSSAMFLERYLDFLK 339

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TNIAT 405
                GGR   V+  S L         +  R WL +  ++EA+V+LP D F R    + T
Sbjct: 340 P----GGRLVSVIDDSVL----GSKAFATTRAWLAQKYIVEAVVSLPGDAFQRSEARVKT 391

Query: 406 YLWILSNR-KTEERRGKVQLINATDLWTSIRNEGK------KRRIINDDQRRQILDIYVS 458
            + I+  +   +E +G+V +  +  +        +             ++  +I  ++  
Sbjct: 392 SILIMRKKVADDEAQGEVFMCYSQFVGIDDPARERVLPVDEDNHKKAQEEIERISKLFAR 451

Query: 459 RENGKFSRMLDYR 471
             +G   + ++  
Sbjct: 452 FSSGDRKKDMNKW 464


>gi|291534097|emb|CBL07210.1| Type I restriction-modification system methyltransferase subunit
           [Megamonas hypermegale ART12/1]
          Length = 510

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 156/446 (34%), Gaps = 46/446 (10%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPT 213
           + +++E L+ +      +    F TP  +       +  P + +   +  +    + D  
Sbjct: 19  LGDLFEQLLNK---GFKQNEGQFFTPTPIAKFIWESI--PLENILNINKEIKYPKVIDYA 73

Query: 214 CGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG+G FLT+ ++ +    G++          G E +     V    + +           
Sbjct: 74  CGSGHFLTEGIDVINKIIGNNDNSWVSENIFGIEKDYRLARVSKVSLFMNG-------AG 126

Query: 273 SKNIQQGSTL--SKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           + NI  G  L  +KD     ++F   ++NPP+  K  K+   + +            G  
Sbjct: 127 NGNIVFGDGLDNAKDKNIENEKFDILVANPPYSVKAFKNHLNLGENSFELFDKISDDG-- 184

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
              +  +LF+  +   L+     G  A ++L  S L N    S     R  LL+N  I++
Sbjct: 185 --GEIEVLFIERIVQLLKP----GAVAGVILPLSILSNN--TSSYIGAREVLLKNFDIKS 236

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV+L +  F  T   T +  L       ++ K+   +   ++ +  ++    R I  D  
Sbjct: 237 IVSLGSKTFGATGTNTVILFLKKHNEPPKKYKMIEDSINAIFENNFSDDWIDRKIYLDYL 296

Query: 450 RQI---LDIYVSR--ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504
           R I    +IY     +   + + +D     Y               + +   ++     +
Sbjct: 297 RHIEVDENIYNEFIMKKINYKKFVDNYFKMY-----------VIAFENSSNVKINEKNAF 345

Query: 505 RKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN-A 563
           +  S   Q+  L+  K   + +Y     + F    I+ N+   +      +    F+   
Sbjct: 346 KNQSEKEQNKILN--KKFYEYVYEIEKDKLFFFGMIRENKTIIVTAPVENTKQKEFLGYD 403

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTE 589
           +  +        +  G  + D +  +
Sbjct: 404 WSNRKGNEGIQINKMGGMLFDEDNRD 429


>gi|325996787|gb|ADZ52192.1| Type I restriction-modification system DNA-methyltransferase
           subunit M [Helicobacter pylori 2018]
          Length = 528

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 15/223 (6%)

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P   +G   FL+H+   L+      G+ A++L    LF G A   E  IR+ LL    I+
Sbjct: 13  PPEKNGDFAFLLHIIKSLKDT----GKGAVILPHGVLFRGNA---EGVIRKNLLMKGYIK 65

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            ++ L  +LF+ T+I   + +L       R+G V +I+A+  +   + +G K R + D  
Sbjct: 66  GVIGLAPNLFYGTSIPACVIVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQD 120

Query: 449 RRQILDIYVSRENGK-FSRMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWR 505
            ++++D + + +    +S+M+             + R +     L+K   A + +     
Sbjct: 121 VQKMIDTFNAYKEIPYYSKMVSLEEISANDYNLNIPRYIASKRELEKDLFALINSPSYLP 180

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
           K      + +  + K +   ++     E +     +    K L
Sbjct: 181 KNEIKAYAPYFQVFKELKNTLFKKSDKEGYYALKTECENIKEL 223


>gi|331088477|ref|ZP_08337391.1| hypothetical protein HMPREF1025_00974 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407817|gb|EGG87308.1| hypothetical protein HMPREF1025_00974 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 1239

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/525 (15%), Positives = 169/525 (32%), Gaps = 51/525 (9%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY 103
              E  +  ++  +       +  E F     Y+     +Y+     +   + ++ L   
Sbjct: 301 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLR-- 358

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I  F  N    F+D         L+   +L ++ + F    +       +++ +++E L+
Sbjct: 359 ILKFYTNNDFAFKDVHNEQLF--LQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLL 415

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTD 222
            +      +    F TP  +       L  P + + K   G     + D  CG G FLT+
Sbjct: 416 SK---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTE 470

Query: 223 AMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
               V+ C           +        G E +     V    + +             N
Sbjct: 471 GFEAVSACVKANDGLRELDRSFAENNIFGIEKDYRLARVSKISLFMHG-------AGEGN 523

Query: 276 IQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G  L        +   F   ++NPP+     K        H   +   F       +
Sbjct: 524 IIFGDGLENYPDKNIKPNTFDILVANPPYSVSAFK-------PHLKLKNNSFSILDTISN 576

Query: 333 DGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +GS    LF+  ++  L+        AA++L SS L   +        R  +L+N  I A
Sbjct: 577 NGSEIETLFVERISQLLKP----NAVAAVILPSSIL--NKENESFICARESILKNFKIRA 630

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV +    F  T   T +  L       ++  +   +   ++     +G + + I +   
Sbjct: 631 IVLMGNKTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDAVFNGCNLDGWEDKAILEQYL 690

Query: 450 RQI---LDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWR 505
           ++I    ++Y      +   + D     + + K     L  +    K       ++   +
Sbjct: 691 KKIDVSSEVYERFL-SEAVDIGDIEDKYFLKYKEAFLALSKTKEKQKQKTFGKLSEKEQK 749

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
           KL       ++  ++    + + + + +  +  +   +     K 
Sbjct: 750 KLLTKQYYQYVKKIEREKMKYFSFVYDQRTLIVAAPDDNKGQEKF 794


>gi|153815281|ref|ZP_01967949.1| hypothetical protein RUMTOR_01515 [Ruminococcus torques ATCC 27756]
 gi|145847343|gb|EDK24261.1| hypothetical protein RUMTOR_01515 [Ruminococcus torques ATCC 27756]
          Length = 1255

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/525 (15%), Positives = 169/525 (32%), Gaps = 51/525 (9%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY 103
              E  +  ++  +       +  E F     Y+     +Y+     +   + ++ L   
Sbjct: 317 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLR-- 374

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I  F  N    F+D         L+   +L ++ + F    +       +++ +++E L+
Sbjct: 375 ILKFYTNNDFAFKDVHNEQLF--LQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLL 431

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTD 222
            +      +    F TP  +       L  P + + K   G     + D  CG G FLT+
Sbjct: 432 SK---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTE 486

Query: 223 AMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
               V+ C           +        G E +     V    + +             N
Sbjct: 487 GFEAVSACVKANDSLRELDRSFAENNIFGIEKDYRLARVSKISLFMHG-------AGEGN 539

Query: 276 IQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G  L        +   F   ++NPP+     K        H   +   F       +
Sbjct: 540 IIFGDGLENYPDKNIKPNTFDILVANPPYSVSAFK-------PHLKLKNNSFSILDTISN 592

Query: 333 DGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +GS    LF+  ++  L+        AA++L SS L   +        R  +L+N  I A
Sbjct: 593 NGSEIETLFVERISQLLKP----NAVAAVILPSSIL--NKENESFICARESILKNFKIRA 646

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV +    F  T   T +  L       ++  +   +   ++     +G + + I +   
Sbjct: 647 IVLMGNKTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDAVFNGCNLDGWEDKAILEQYL 706

Query: 450 RQI---LDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWR 505
           ++I    ++Y      +   + D     + + K     L  +    K       ++   +
Sbjct: 707 KKIDVSSEVYERFL-SEAVDIGDIEDKYFLKYKEAFLALSKTKEKQKQKTFGKLSEKEQK 765

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
           KL       ++  ++    + + + + +  +  +   +     K 
Sbjct: 766 KLLTKQYYQYVKKIEREKMKYFSFVYDQRTLIVAAPDDNKGQEKF 810


>gi|317501643|ref|ZP_07959834.1| hypothetical protein HMPREF1026_01778 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896894|gb|EFV18974.1| hypothetical protein HMPREF1026_01778 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1255

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 79/525 (15%), Positives = 169/525 (32%), Gaps = 51/525 (9%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESY 103
              E  +  ++  +       +  E F     Y+     +Y+     +   + ++ L   
Sbjct: 317 DTYESLQDRLQRLHKEGMEKFMKEEIFYVPDDYAENLVRQYTGQERKNMIAHLKHTLR-- 374

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I  F  N    F+D         L+   +L ++ + F    +       +++ +++E L+
Sbjct: 375 ILKFYTNNDFAFKDVHNEQLF--LQNGKILVEVVQLFEKFRIIGSE-NLQMLGDLFEQLL 431

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTD 222
            +      +    F TP  +       L  P + + K   G     + D  CG G FLT+
Sbjct: 432 SK---GFKQNEGQFFTPVPITRFIWNSL--PVEKILKTEEGAGLPKIIDYACGAGHFLTE 486

Query: 223 AMNHVADCGSH-------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
               V+ C           +        G E +     V    + +             N
Sbjct: 487 GFEAVSACVKANDSLRELDRSFAENNIFGIEKDYRLARVSKISLFMHG-------AGEGN 539

Query: 276 IQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I  G  L        +   F   ++NPP+     K        H   +   F       +
Sbjct: 540 IIFGDGLENYPDKNIKPNTFDILVANPPYSVSAFK-------PHLKLKNNSFSILDTISN 592

Query: 333 DGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           +GS    LF+  ++  L+        AA++L SS L   +        R  +L+N  I A
Sbjct: 593 NGSEIETLFVERISQLLKP----NAVAAVILPSSIL--NKENESFICARESILKNFKIRA 646

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           IV +    F  T   T +  L       ++  +   +   ++     +G + + I +   
Sbjct: 647 IVLMGNKTFGATGTNTVVLFLEKYNEPPKKADLIEDSIDAVFNGCNLDGWEDKAILEQYL 706

Query: 450 RQI---LDIYVSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTGLARLEADITWR 505
           ++I    ++Y      +   + D     + + K     L  +    K       ++   +
Sbjct: 707 KKIDVSSEVYERFL-SEAVDIGDIEDKYFLKYKEAFLALSKTKEKQKQKTFGKLSEKEQK 765

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKV 550
           KL       ++  ++    + + + + +  +  +   +     K 
Sbjct: 766 KLLTKQYYQYVKKIEREKMKYFSFVYDQRTLIVAAPDDNKGQEKF 810


>gi|282864680|ref|ZP_06273735.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282560619|gb|EFB66166.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 663

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 57/275 (20%), Positives = 101/275 (36%), Gaps = 36/275 (13%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           ++ +E L++R+            TP  +  L   + L               T++DP CG
Sbjct: 129 THTFEFLLQRWLDAHVRQISA--TPARLATLMARIAL----RTRTAWGQKTSTVFDPACG 182

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +G  L+ A           +    +  +G E++     +  A +     E D R      
Sbjct: 183 SGHLLSAAA---------GQASGGVELYGCEIDSALAELAEARLAFAGDERDVRTR---- 229

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I    +L  D +   R    L NPPF ++    +       +     R+  GLP  ++  
Sbjct: 230 ITAVDSLRDDPYPDLRADIALCNPPFNERDWGYE-------ELATDPRWVHGLPPRTEPE 282

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ HL  +L      GG A +VL  +             IR  LL + ++ A+VALP 
Sbjct: 283 LAWVQHLLARLRS----GGTAVVVLPPAVASRRAGR----RIRGSLLRHGVLRAVVALPP 334

Query: 396 DLFFRTNIATYLWILSNRKTEE--RRGKVQLINAT 428
                 +++  LWIL               L++A+
Sbjct: 335 GCAQPHSVSLQLWILRAGDERTGGSGDDALLVDAS 369


>gi|329963238|ref|ZP_08300975.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057]
 gi|328528934|gb|EGF55874.1| N-6 DNA Methylase [Bacteroides fluxus YIT 12057]
          Length = 484

 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 136/418 (32%), Gaps = 79/418 (18%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT-------------VPDRVMSNI 158
           + I +DF+F     ++ +  ++ +     + I    +              +   +  ++
Sbjct: 82  RYIIQDFEF-----KINRIEIVSECVDIINSIYKETENLGSSLNGTITYYDIDSAIFDDL 136

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE ++++      E  ++   PR + +L  +L                   YDP CG GG
Sbjct: 137 YEKIMKK-----PEKFQNLYIPRHIRYLMASLTQINYSDRI----------YDPMCGNGG 181

Query: 219 FLTDAMNHVADCGSHHKIPP------------ILVPHGQELEPETHAVCVAG---MLIRR 263
            L      +       +                         P+T          +L+  
Sbjct: 182 LLLSVYERIMIKEYESQNQDVIDTDNDGFSTLRYSLMANLPSPDTLNGSDPNPQQLLLSA 241

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L    R     N+Q  +   +D    + F   ++NPPFG+K+ K     E          
Sbjct: 242 LSFQLRGIKKANLQP-NNFIQDN-ISEHFDVIIANPPFGQKFNKPHQINEVV-------- 291

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                  I +  ++F+  +A+ L       GRA I++S   L      S   + R+ L  
Sbjct: 292 -------IKNAEIVFIDKIADTLSPT----GRATIIVSEGFL--SNTNSQHMQCRKKLFT 338

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              +E +++LP+ +F  T   + + ILS       R  V      +   +     ++ + 
Sbjct: 339 QYRLEGVISLPSGIFLNTQAKSSILILSKD-EHNNRPDVWFYELQNDGYTNDRAKRRTKE 397

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
                  +++  +  R     ++  +   F    +      R  + L  +   +   +
Sbjct: 398 FP---LPEVVKAFRERLYNSQNKRTETCFF----VSFEEIQRNDYNLSYSRYKQFNYE 448


>gi|225568452|ref|ZP_03777477.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM
           15053]
 gi|225162680|gb|EEG75299.1| hypothetical protein CLOHYLEM_04529 [Clostridium hylemonae DSM
           15053]
          Length = 605

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 111/345 (32%), Gaps = 47/345 (13%)

Query: 137 CKNFSGIELHPDTVPDRVMS-NIYEHLIRRFGSEVSE-GAEDFMTPRDVVHLATALLLDP 194
              F    + P          ++       F   V +       TP  +      +    
Sbjct: 238 ILKFIEDNILPFINDKSTSGQDLLNLFFVTFNKYVGKSDKNQAFTPDHITDFMAKITGVN 297

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---CGSHHKIPPILVPHGQELEPET 251
             ++          + DP CG+G FL  AM    D     +  +       +G E +   
Sbjct: 298 KHSV----------VLDPCCGSGSFLVRAMTQALDDCATAAEQETIKRNQIYGIEFDENV 347

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           + +    MLI         D + NI+QGS     D     + +  L NPP+       + 
Sbjct: 348 YGLATTNMLIH-------SDGNSNIRQGSCFKLSDWIKEAKPNVILMNPPYNG-----QR 395

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               EH      +     P      + F+ ++A+ L         A ++  +  +     
Sbjct: 396 IHLPEHYVKTWTKNKKEDPSKG---LYFVKYIADTLNSINQQAKLAVLLPVACAIGTSGE 452

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL---SNRKTEERRGKVQLIN 426
               + ++  +L+ + ++A+  LP ++F+   + +    +    +  K            
Sbjct: 453 I---ARLKSEILKENTLDAVFTLPNEIFYPGASASACCMVFKIGTKHKDMTNPDTYFGYC 509

Query: 427 ATDLWTSIRNEGK--------KRRIINDDQRRQILDIYVSRENGK 463
             D +   +N G+         +    + ++  I ++Y +R++  
Sbjct: 510 KEDGFKKKKNLGRVEQVDTVTGKSRWVEIEKEWI-ELYRNRQSVD 553


>gi|260589500|ref|ZP_05855413.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583]
 gi|331082930|ref|ZP_08332050.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540068|gb|EEX20637.1| N-6 DNA Methylase family protein [Blautia hansenii DSM 20583]
 gi|330399925|gb|EGG79583.1| hypothetical protein HMPREF0992_00974 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 588

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 74/496 (14%), Positives = 153/496 (30%), Gaps = 64/496 (12%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             + E +          + F      +F          +     +  LE  I  +  N +
Sbjct: 3   QRIEEIWRELKRKVPLEQIFYLSLVLAFCQNQRKEKGKITQAGVKEVLE-RIQGY--NLR 59

Query: 113 AIFED-FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             F   F F      L+         +    IE+                L +   ++  
Sbjct: 60  VAFTRIFQFIRW-EILDDKD-----IEEMFQIEVSL-FREYLEKGGKLSELFQMIFAQAG 112

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP +V  L   +L                   D  CG  G   +    +    
Sbjct: 113 KWDVYAPTPTEVRKLIVDILGFHKAHRIA----------DFCCGGAGLGLELWKRLTIRN 162

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGK 290
                   +  HG+EL      +C A  L               I++   L+  D    +
Sbjct: 163 KE------VSFHGEELNR---NLCDAAQL----YFSAYEVPDGEIEERDILTIPDTAESQ 209

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + + P G+           E  + +  R      K      +F+  +  +L+   
Sbjct: 210 SYDIIVLDIPRGQNVT--------EVYDEKDPRLLCFNKKNIYSDWIFIQDVLYRLKKT- 260

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G AA++++   L        E  +R  ++ ND +EA++ LP +L+ +    T L I 
Sbjct: 261 ---GTAAVLVTPGALTRVN----EEILREQIVVNDWLEAVITLPENLYSKYYAGTELLIF 313

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
           +  K   R+GKV  I+ +  +   + +G++   I +    Q+ +I+V     K    +  
Sbjct: 314 NKDKESSRKGKVIFIDISKEF---KRQGRRTVEITEAGLLQVREIFVHSWEVKGVSAVCS 370

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
           R          +  +  +    +   + E +  +     L     +     + ++     
Sbjct: 371 R---------EQIQKNQYSFKPSQYIQQEDEWEFVSELVLEDIAQITRGAQVPKRADVVE 421

Query: 531 WAESFVKESIKSNEAK 546
             + +   +IK  + K
Sbjct: 422 DGDVY-FLNIKDIQEK 436


>gi|323439267|gb|EGA96993.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 172

 Score =  103 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 12/180 (6%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTNIATYLWILSN 412
           G  A+VL    LF G A   E  IRR+L+E  + +EA++ LP ++F+ T+I T + +   
Sbjct: 2   GTMAVVLPHGVLFRGAA---EGVIRRYLIEEKNYLEAVIGLPANIFYGTSIPTCILVF-- 56

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYR 471
           +K  ++   V  I+A++ +      GK +  ++D Q  +I++ Y  +E   K+S     +
Sbjct: 57  KKCRQQDDNVLFIDASNNFEK----GKNQNHLSDTQVERIINTYKGKETIDKYSYSATLQ 112

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                   +  P R     ++     L+      K      +     +   ++++     
Sbjct: 113 EIADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 171


>gi|227511526|ref|ZP_03941575.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
 gi|227085260|gb|EEI20572.1| possible site-specific DNA-methyltransferase (adenine-specific),
           HsdM subunit [Lactobacillus buchneri ATCC 11577]
          Length = 193

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 15/123 (12%)

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFR 400
           +   L+      GR A+VL    LF G A   E +IR++++E D +++A++ +P +LF+ 
Sbjct: 1   MLYHLKTD----GRMAVVLPHGVLFRGAA---EGKIRQYMIEKDNVLDAVIGMPANLFYG 53

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T+I T + +            +  I+A+  +      GK +  + D+  ++I+D Y  R+
Sbjct: 54  TSIPTVVLVFDK---SRINHDILFIDASKDFEK----GKNQNNLTDENVKKIIDTYKDRK 106

Query: 461 NGK 463
           + K
Sbjct: 107 DVK 109


>gi|293115501|ref|ZP_05791808.2| putative type I restriction-modification system, modification
           subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809619|gb|EFF68824.1| putative type I restriction-modification system, modification
           subunit [Butyrivibrio crossotus DSM 2876]
          Length = 587

 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 153/409 (37%), Gaps = 52/409 (12%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +  +   +  TP  +V LA  LL   ++           ++ D   GTG FL+ A   
Sbjct: 120 SMDGRKFGGESETPLSIVKLAYGLLKPENE-----------SIADFCSGTGVFLSYA--- 165

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                   ++    + +G E+      +    M +              I+QGS  S D 
Sbjct: 166 -------AQMNKGSLYYGIEINTLAKELSEIRMSLLTDNHL--------IRQGSVFSMD- 209

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              + F    S+ P+  +  K     +  ++  ++    P L + +     F++++   L
Sbjct: 210 -ADRTFDKIFSDSPWNVRSWKANSDEQTINEIEQI---VPELKRATTADWHFIVNVMRHL 265

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +      G+A +  S+   +NG        IR  +++   +EA+++LP +L+  T+I T 
Sbjct: 266 KEE----GKAVVTSSNGLTWNGGIS---KAIRERIVKLGWLEAVISLPANLYSTTSIPTS 318

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + +LS +  +     V+LI+A+D    +   G+++  ++D+   +IL++    +N   S+
Sbjct: 319 ILVLSKKDNKG----VRLIDASD----MATVGRRQNELDDEAINEILELMT--KNSANSK 368

Query: 467 MLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
           ++       +   +     +   +       L   I         ++  LD L       
Sbjct: 369 LVSIDEIATQDYAINPSRYLQKEVKVENGVPLGDLIVNITRGAQLKASELDELVSDKPTS 428

Query: 527 YPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
           Y Y    + +++ I S +   LK    K       N          PV 
Sbjct: 429 YQYL-MLANIQDGIISEDLPYLKELDKKQEKYCIKNNSLVISKNGAPVK 476


>gi|197119367|ref|YP_002139794.1| type I restriction/modification system DNA methyltransferase
           [Geobacter bemidjiensis Bem]
 gi|197088727|gb|ACH39998.1| type I restriction/modification system DNA methyltransferase,
           putative [Geobacter bemidjiensis Bem]
          Length = 707

 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 102/282 (36%), Gaps = 42/282 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V    YE +IR    +     + F TP  VV     LL           P +   + DP
Sbjct: 186 DVKGVAYEEVIRNTFDKSDH--QQFFTPHQVVTFMVELL----------RPFLHGAIGDP 233

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CGT GFL + +    + G            G E++     V    +L+        +  
Sbjct: 234 ACGTAGFLAEVVRTGVEVG---------SISGFEIDERLSWVSGINLLLHGANKFEIKYF 284

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           +     G  L+K  F        ++NPPFG  +  +    +     G+L R   G+    
Sbjct: 285 NCGGTLG-PLAKPYFN--TLDAIITNPPFGSDFNDEDALRDFSLGQGKLSR-RRGI---- 336

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+    + L+     GG   IV+    L    A     ++R+++L++  I AIV+
Sbjct: 337 ----LFIERCWSLLKD----GGVVGIVIDEGVLNLPSAT----DVRQFILDHFDIMAIVS 384

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           LP   F    N+   +  L     + R  +V    A ++   
Sbjct: 385 LPETAFMPYANVNASILFLKKTTEQNRSTEVFFGKADNIGRK 426


>gi|294084222|ref|YP_003550980.1| N-6 DNA methylase [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663795|gb|ADE38896.1| N-6 DNA methylase [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 790

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 125/397 (31%), Gaps = 58/397 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +   YE  ++             +TPR +   A  ++      +           YDP
Sbjct: 279 DALGQFYETFLKYANDAS--EMGIVLTPRHITKFAAEVVGVGAHDVI----------YDP 326

Query: 213 TCGTGGFLTDAMNHVADCG-----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TCGTGGFL  A++ V +                  +G E      ++ +  M+ R     
Sbjct: 327 TCGTGGFLVAALDKVRETCQQTDGEKFDAFRNDNLYGIEQSDRVFSIALVNMIFRG---- 382

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK----NGELGR 323
              D S  I  G+                    F    +  K     E +    +G   R
Sbjct: 383 ---DGSSKIHNGNCFDNQ---------------FNMLSKTVKRQSASECEPNKASGPFTR 424

Query: 324 FGPGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                P  +S+    F+ H   +           AI+ +      G       + R+ LL
Sbjct: 425 IFMNPPFAVSEPECDFVDHAILQAAPSAKL---FAILPNGPI--TGDDH---KKWRKNLL 476

Query: 383 ENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
               ++A++ +  DLF+   N  TY  IL   +       V      D  ++ +      
Sbjct: 477 LQHTVKAVIRMQDDLFYPVANKGTYAIILETWRPHRIDDLVYFGILFDGQSASQKSKLIA 536

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
           +    D   +I D          +++         R K+L PL++  + D    A L + 
Sbjct: 537 KATAQDNMNEITDDLRKFMQIGDTKIGAKP-----REKILSPLKLDGLYDFASEAYLSSS 591

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                      +  L +L+ +  +  P+  A   ++E
Sbjct: 592 EKISIAPEKSIAGVLKMLESVEAKNAPFIIAAKEIRE 628


>gi|327413128|emb|CAX68157.1| putative restriction endonuclease, alpha subunit [Salmonella
           enterica subsp. enterica]
          Length = 629

 Score =  103 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 113/344 (32%), Gaps = 68/344 (19%)

Query: 131 GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           G+  KI ++                V+   Y   + ++ +   +     +TPR +  L  
Sbjct: 278 GVFKKIIEDICEQVWPYINVYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHIAELF- 335

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---ILVPHGQ 245
                        +      + D   GTGGFL  AM H+       +           G 
Sbjct: 336 ---------SLLANVNPESRVLDICAGTGGFLISAMQHMLKKAVTDEQRQDIRRNRLIGV 386

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFG 302
           E  P+  A+  + M++R        D   N+ Q S   + +       + +  + NPP+ 
Sbjct: 387 ENSPKMFALAASNMILRG-------DGKANLHQASCFDEAITSSIKKMKPNVGMLNPPYA 439

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAAIV 359
           +                            SD  +    F+  +   LE    G    AIV
Sbjct: 440 QS--------------------------KSDAELHELYFVKQMLTCLEPGSIG---IAIV 470

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
             S  +           +R  LL+   ++A++++P +LF+   + T + +  +       
Sbjct: 471 PMSCAISPN-------PVREELLKYHTLDAVMSMPAELFYPVGVVTCIMVWISGVPHAVS 523

Query: 420 G-KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460
             K        D +   +++G+          R + +D+Y +RE
Sbjct: 524 DRKTWFGYWRDDGFVKTKHKGRIDLNEKWPAIRDRWVDMYRNRE 567


>gi|157143789|emb|CAL47057.1| type I restriction-modification system, M subunit [Listonella
           anguillarum serovar O2]
          Length = 152

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+    SE   GA  + TPR ++ +   L+        K        + DPT GTGG
Sbjct: 7   YEGLLEINASEKKSGAGQYFTPRVLIEVMVELMKPTPKD--KRHNQKGDVIVDPTAGTGG 64

Query: 219 FLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           FL  A  ++             +         G EL P+T  + +  +++  L  D   D
Sbjct: 65  FLIAAHQYMEKNFDVTGLDEADYDSYQHETFFGMELVPDTRRLAMMNLMLHDLAVD---D 121

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            +  +  G TLS +     +    L+NPPFG
Sbjct: 122 ENSGVLYGDTLSNEGKALPKASLILANPPFG 152


>gi|325840368|ref|ZP_08167015.1| N-6 DNA Methylase [Turicibacter sp. HGF1]
 gi|325490353|gb|EGC92680.1| N-6 DNA Methylase [Turicibacter sp. HGF1]
          Length = 615

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 133/426 (31%), Gaps = 67/426 (15%)

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL----------- 132
           S Y+     +    N ++  I   S + K I ++ +  ST+  L+ A             
Sbjct: 222 SRYTGDGDLANAIWNCVDKKIKGSSLDNKEIIQN-ELKSTLLSLQDAQKEGIKEKYPKGA 280

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++ KN   +        +  + +I+  +   + +         +TP  +  L   L  
Sbjct: 281 LLELTKNVDNLLYDYHKHGELDIMSIFFTVFLSYSTSGGSDLGIVLTPAHITKLFCDLAA 340

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQELE 248
              ++           + D   GTGGFLT A   +           ++      +G E +
Sbjct: 341 INLES----------KVLDICAGTGGFLTSAWKTIKLSDKYTEMQKEVFRQNNLYGVEKD 390

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEK 307
              + +    M I        +D   +I +G   S K   +    +    NPP+      
Sbjct: 391 KSIYTIIALNMFI-------NKDGKSHIFKGDCFSLKKEISDFECNVGFINPPYSDSIYS 443

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           +                           + F+  + + L     G    AI+  ++    
Sbjct: 444 E---------------------------LSFVELMLDSLLPESIG---IAILPVNAISSR 473

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
            +  S    +++ +L    + A + +P  LF+     T + +   +      G       
Sbjct: 474 TKKHSDILSVKQSILSKHTLVASIQMPPLLFYPKGTETVVLVF--KTGAAHTGDTWFAKF 531

Query: 428 TDLWTSIRNEGKKRRIIN-DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
            D +  I+++  +   ++ D+Q RQ+LD Y  +    FS              +      
Sbjct: 532 DDGYELIKHQKTRTPRLDADEQYRQLLDAYCKKSETDFSFNKHVTYTQQWVYTMFEDANY 591

Query: 487 SFILDK 492
                 
Sbjct: 592 EISDSD 597


>gi|261868513|ref|YP_003256435.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413845|gb|ACX83216.1| putative N-6 DNA methylase [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 825

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 107/349 (30%), Gaps = 63/349 (18%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
                I +  +             LY +                  +++ +E  I     
Sbjct: 218 KEVIDINDKINLDDHS--------LYYVVGQL--QNYCLIDAERDAIADAFETFIGY--- 264

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV- 227
            +      F TPR+V+ L   +L    D              DP CG+GGF+ +++ H+ 
Sbjct: 265 ALKGPQGQFFTPRNVIKLMVNILNQGVDEKI----------IDPACGSGGFIVESLRHIW 314

Query: 228 --------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
                                +   + + HG E +     V  A M I         D  
Sbjct: 315 AIWDKDAQRLKWNNLALQEEKQKAAMSLIHGIEKDSLLAKVSKAYMAILG-------DGK 367

Query: 274 KNIQQGSTLSKDLFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             I    +L        +         F+  L+NPPFGK  +        ++K  +  + 
Sbjct: 368 GGIFCEDSLELPTHWDTKTQQSIHINSFNCLLANPPFGKDIKITGKEKLAQYKLAKKWKK 427

Query: 325 ---GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     S+  M   +    +       GGR  I++  +        +  S+     
Sbjct: 428 DGDKYIETNKSNSEMPPQILFIERCLDLLTDGGRMGIIIPETYF-----HAPRSQYVMEF 482

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +    I  ++ LP + F   N A  + +    K  +++ K+ +  A ++
Sbjct: 483 MAKHNIFCLIDLPHNTFRPHNNAKCVVVFL-EKNRKQQEKILMCVAEEM 530


>gi|304312534|ref|YP_003812132.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301798267|emb|CBL46489.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 693

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 116/388 (29%), Gaps = 65/388 (16%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL 132
            +     F+   +      G    R  +E          K IF     +  I   ++A  
Sbjct: 228 RQAWKRRFWAGPKEQFEPQGRKAIRARIEELFTEVKKQYKNIFRG---NEEITLSDRA-- 282

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L  I    +  +              Y+ L+      +      + TPR VV L   +L 
Sbjct: 283 LAFIVSELAKYDFT--RTDVDAKGVAYQELVG---VNLRGDRGQYFTPRGVVKLVIEML- 336

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------ 234
                     P    TL DPTCGTGGFL   + H+                         
Sbjct: 337 ---------DPKEHETLLDPTCGTGGFLVATLGHMLKRFRQEQDTQAGNESTTEFLNVHE 387

Query: 235 --KIPPILVPHGQELEPETHAVCVAGMLI------RRLESDPRRDLSKNIQQGSTLSKDL 286
             K       +G + +P         M++           +       ++    + +K  
Sbjct: 388 RLKEYAAANVYGADFDPFLIRAAQMNMVLAGDGRGHIYNINSLEFPLGHLADLDS-AKKE 446

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG--------RFGPGLPKISDGSMLF 338
                     +NPPFG         + ++++             R    L       +LF
Sbjct: 447 IPLGSLDIIATNPPFGSDIPITDKHILEQYELAHHWESDGEGGFRNTGSLKGSVAPEILF 506

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L+    G GR  IVL    L N  A      IR W++    + A V LP + F
Sbjct: 507 IERCIKWLK---AGTGRMGIVLPDGVLGNPAAEY----IRWWIMRETQVLASVDLPVEAF 559

Query: 399 ---FRTNIATYLWILSNRKTEERRGKVQ 423
                 NI T L  L  +  EE+R +  
Sbjct: 560 IAEANVNILTSLLFLRRKSEEEKRAEAL 587


>gi|186683509|ref|YP_001866705.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
 gi|186465961|gb|ACC81762.1| N-6 DNA methylase [Nostoc punctiforme PCC 73102]
          Length = 614

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 109/311 (35%), Gaps = 60/311 (19%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L+KI +               +  + ++ ++    S +  G   + TP  +V LA  ++ 
Sbjct: 303 LFKIVEKLQEFSFIDSKAD--IKGSAFQSVLG---SAIRAGMGQYFTPPPIVDLAVGIM- 356

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------KIPPILVPHGQE 246
                     P     + DP CG+G FL+  +++V                     HG E
Sbjct: 357 ---------KPTASDMILDPFCGSGHFLSRCLDYVVQHQGATLDSYTLHQFKFFHLHGIE 407

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-----------SKDLFTG--KRFH 293
                  + +  M++         D   NI+    L             D      + F 
Sbjct: 408 KSERMVRIAMTDMMLH-------DDGHTNIRNLDALLSFENYPDIVALNDSEDDTPEVFS 460

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNG 352
             L+NPPFG    ++   +         GRF  G  K S    +L L      L+     
Sbjct: 461 MILTNPPFGSIMRQEVMEMV--------GRFQLGHKKKSLPLEILGLERCFQFLKP---- 508

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWIL 410
           GG+ +IVL    L N  +      +R W+     I+A+++LP + F  +   + T L + 
Sbjct: 509 GGKLSIVLPDGLLKNKSSI----FVRDWVENVAKIKAVISLPEEAFNPYGAMVKTSLCVF 564

Query: 411 SNRKTEERRGK 421
              K  E+R K
Sbjct: 565 QKYKNGEKRDK 575


>gi|308178691|ref|YP_003918097.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
 gi|307746154|emb|CBT77126.1| type I restriction-modification system modification subunit
           [Arthrobacter arilaitensis Re117]
          Length = 621

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 116/342 (33%), Gaps = 64/342 (18%)

Query: 130 AGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            GLL +I    +   +          V+   Y   + ++     +G    +TP+ V  L 
Sbjct: 273 KGLLNEIVTLLAEKVMPFLTVYEDFDVVGAFYGEFL-KYTGGDGKGLGIVLTPKHVTELF 331

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCGSHHKIP--PILVPHG 244
             +     D            + D   GTGGFL  +M   +    +  ++         G
Sbjct: 332 ALIANVSKDD----------KVLDICAGTGGFLISSMVKMIQTATTEAEVEDIKKNRLIG 381

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG---STLSKDLFTGKRFHYCLSNPPF 301
            E  P  +A+  + M++R        D   N+ QG    T         + +  + NPP+
Sbjct: 382 VEQSPSMYALGASNMILRG-------DGKANLHQGSCFDTAISAAVKKNKANVGMINPPY 434

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            K  E                             + F+  + + L     GG   AIV  
Sbjct: 435 AKTKEDLH-------------------------ELRFVEQMLDSLAP---GGTGIAIVPV 466

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG- 420
           +         +        LL+   +EA++++P ++F+   + T + + +   + E+   
Sbjct: 467 TCATAPSVHEN-------NLLKKHTLEAVMSMPPEVFYPVGVITCIMVFTAGVSHEKNDR 519

Query: 421 KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460
           K        D +  ++N G+  R       R + +D Y +RE
Sbjct: 520 KTCFGYWRDDTFIKVKNLGRVDRHRTWAATRDRWVDTYRNRE 561


>gi|149391962|emb|CAL68658.1| restriction-modification enzyme [Thermus scotoductus]
          Length = 1251

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 150/480 (31%), Gaps = 37/480 (7%)

Query: 43  RLE--CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
             +    L+        ++L    + ID  +              +         TR  +
Sbjct: 303 YFDLIDRLQRLYRDGMREFLKEDVTYIDDRTIRDA----------FKFFKNDPDATREKI 352

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
             Y           F   D  +     + A +L KI +    I L+ D   ++ + +++E
Sbjct: 353 LDYFRRQKYFTNNDFSFLDVHNEQLFYQNAAILLKIVRMLQDIRLNGD-QQNQFLGDMFE 411

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + + +      +    F TP  V       L        +++P     + D  CG G FL
Sbjct: 412 YFLDQ---GFKQTEGQFFTPLPVTRFIILSLPLETIFSDEQNPPK---VIDYACGAGHFL 465

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           T+  + +        +      + +     + + +      + ++ +        NI   
Sbjct: 466 TEMASQLRRLRPGQDVKFYSKFYSEFYGVEKEYRLSK----VAKVSAFMYNQDEINIIYA 521

Query: 280 STL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             L          F   +SNPP+  K   +     +  +   +    P     +D    F
Sbjct: 522 DALVRHPDIPEGAFALLVSNPPYSVKGFLETLPKTERERYELIKTVDPKSYPTNDAIEAF 581

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
            +  A +L  P    G AAI++ SS L N       +  R  LL N  I A+V L    F
Sbjct: 582 FLERARQLLAPH---GLAAIIVPSSLLSNTDNIY--TRTREILLRNFDIVALVELGNGTF 636

Query: 399 FRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
            +T   T    L             +         ++  +G    +  D    Q    Y+
Sbjct: 637 GKTGTNTVTLFLRRKDDNPAPADHYRNRVNAWFNGNMDKDG----VFADASLLQAYCDYI 692

Query: 458 SRENGKFSRML-DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
                 +  +L    +      ++ +  R +F      + +L+   +++K S   +   L
Sbjct: 693 GIPLDDYRTLLQSNPSPALLDTEIFKEYRRAFDSSSE-VEKLKKRKSFQKKSEDERQAEL 751


>gi|118475739|ref|YP_892534.1| restriction and modification enzyme CjeI [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414965|gb|ABK83385.1| restriction and modification enzyme CjeI [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 1285

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 80/524 (15%), Positives = 157/524 (29%), Gaps = 53/524 (10%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            + E  +  + + Y       ++ E             S++  + + +   +N +  +I 
Sbjct: 302 DSFEAMQERLMKLYKDAMKEYLNEEITYVSDEQIDEQFSDFKRNKIKTQTLKNQINEFIR 361

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
                + + F   +  +     + A +L  I K F  + L      ++++ N++E  +++
Sbjct: 362 MLKFYSHSDFSFIEVHNKTLFEQNAQVLKAIIKLFENLRLT-QNKTNQLLGNLFELFLQK 420

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
              +       F TP  +       L  P   LF         + D  CG G FL    N
Sbjct: 421 GMKQ---DEGQFFTPIQICEFIVHSL--PLKMLFDNGIPK---VIDYACGAGHFLNTYAN 472

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                 +  +       +G E E     V      +              I     L + 
Sbjct: 473 IAKSISNDSEA-INSNIYGIEKEYRLSKVAKVSAAMYG-------QSGVKISYADALDES 524

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            F  + F   ++NPP+  K      +  +  K      F     + S+    F      +
Sbjct: 525 KFKERDFDLLIANPPYSVKGFLQTLSKNECEKYEL---FNYINLESSNAIECF---FIER 578

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                    + AI+L SS L          + R  +L N  I +I    ++ F  T   T
Sbjct: 579 ANRLLKSNSKVAIILPSSIL---NKDGVYEKTREIILRNFDIISITEFGSNTFGATGTNT 635

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR---ENG 462
            +  LS  K     G       +  + +++   +     ++    + L  Y      +  
Sbjct: 636 VILFLSK-KQTYANGF-----NSQSYENLKENIESSLDFSNLYLLEGLLAYCEFMGYKKD 689

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +F   L     GY  I        S  + K  L   +       L    +    +  + +
Sbjct: 690 EFREFLSG---GYGEI-------YSHDIFKEYLNEFKNSSALSNLKKSKRYKDSNEKEAL 739

Query: 523 MQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
            Q+         F+   +   + K L     K      I +   
Sbjct: 740 EQK--------EFLNFCLNLEKEKILFFSLVKYTNTLIIKSPSE 775


>gi|323438356|gb|EGA96133.1| hypothetical protein SAO11_2769 [Staphylococcus aureus O11]
          Length = 123

 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
           K   +    GQE    T+ +    ML+  +     R  + +I+   TL    F G  F  
Sbjct: 1   KETQVYRYFGQERNNTTYNLARMNMLLHDV-----RYENFDIRNDDTLENPAFLGTTFDA 55

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            ++NPP+  KW  D      E  +G        L   S     F+ H+ + L+      G
Sbjct: 56  VIANPPYSAKWTADSKFENDERFSGY-----GKLAPKSKADFAFIQHMVHYLDDE----G 106

Query: 355 RAAIVLSSSPLFNGRAG 371
             A+VL    LF G A 
Sbjct: 107 TMAVVLPHGVLFRGAAE 123


>gi|330468262|ref|YP_004406005.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
 gi|328811233|gb|AEB45405.1| N-6 DNA methylase [Verrucosispora maris AB-18-032]
          Length = 653

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 93/272 (34%), Gaps = 48/272 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            ++ L +RF +     +  F TP D+  L   L                 T+ DP  G+G
Sbjct: 128 AFDELWQRFSAPGPGRS--FATPDDLADLMVGLAGVD-----------GCTVLDPAAGSG 174

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A+                  +GQEL+     +    + +R +  D          
Sbjct: 175 AVLRAAVR-----------AGCTTAYGQELDEGLARLAELWLALREVPGDMN-------- 215

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L  D + G  +   + +PPFG     D+       +     R+  G    ++  + 
Sbjct: 216 VGDSLRADAYAGHTYDTVVCHPPFGATNWGDE-------ELSHDPRWIVGTTPRTEPELA 268

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    L      GG A +++  +             IR  LL    + A++ALP   
Sbjct: 269 WVQHALAHLR----AGGHAVLLMPPTVASRRAGR----RIRAELLRRGALRAVIALPPGA 320

Query: 398 FFRTNIATYLWILSNRKTEE-RRGKVQLINAT 428
                +  +LW+L     +     +  L++A 
Sbjct: 321 AAPHGVPLHLWVLRRPAPDTPPPARTLLVDAA 352


>gi|86146745|ref|ZP_01065065.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
 gi|85835395|gb|EAQ53533.1| putative type I restriction-modification system, M subunit [Vibrio
           sp. MED222]
          Length = 198

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 11/167 (6%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W  A  L G  + +++  V+L    L+ +    E  R  + +     G           
Sbjct: 31  LWDTANQLRGSVESSEYKHVVLSLVFLKFISDKFEARRQKMID----DGQEAFVEMKEFY 86

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLE-------SYIASFSDNAKAIFEDFDFSSTIARL 127
                F+   +   S + +   ++++        S I   + + K    D  FS     +
Sbjct: 87  QQDNIFFLPEDARWSFVKARAKQDDIAIIIDTALSTIEKNNPSLKDALPDNYFSRQGLEV 146

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           +K   L    +N   +    D   + ++  +YE+ + +F +   +G 
Sbjct: 147 KKLASLIDSIENIDTLANECDMSEEDLVGRVYEYFLGKFAATEGKGG 193


>gi|224371956|ref|YP_002606122.1| HsdM3 [Desulfobacterium autotrophicum HRM2]
 gi|223694675|gb|ACN17958.1| HsdM3 [Desulfobacterium autotrophicum HRM2]
          Length = 672

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 116/399 (29%), Gaps = 97/399 (24%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-- 201
                 V   V+  +++  +R        G   ++TP  V      +         +   
Sbjct: 289 NGTLKDVSGDVLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLTMAFHDIVQDAETVG 347

Query: 202 -------SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----------KIPPILVPH 243
                  +   +    DPTCG+ GF + A++H+                           
Sbjct: 348 QLTTRDANNRPVFRFCDPTCGSYGFGSVALSHLKAALDDIPMADSARDALFNDMMEYSFV 407

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG- 302
           G +  P    +    M ++                 ++L+             +NPPFG 
Sbjct: 408 GADSAPRMVMLARVNMALQGANKAKIFYT------DNSLTTPSLQPNSVDLICTNPPFGT 461

Query: 303 -----------KKWEKDKDAVEKEHKNG----------------ELGRFGPGLPKISDGS 335
                      + ++KD D +    ++                   G    G    + G 
Sbjct: 462 PKFGKGKATQKQHYQKDMDLILDNFRSDLINVSTTKADKMECRPTTGGLALGSKPNNKGE 521

Query: 336 M------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL- 382
                        LF+      L+     GGR  IVL    L      S +  +R +++ 
Sbjct: 522 WKPVKGGSIDPAVLFIDRCLQLLKP----GGRLLIVLPDGVL----CNSSDRYVREYMMG 573

Query: 383 --END--------LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGK 421
             + D        +I+A+V+LP D F    T   T +  L  RK           E +  
Sbjct: 574 TKDADGQFVGGKAIIKAVVSLPADTFKLSGTGAKTSVLYLQKRKASPDHPEQFLPEPQTD 633

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           V +  A  L   ++N  +       +   +I+  Y   E
Sbjct: 634 VFMAVAETLGYVVKNNIEDYDSGVPNDLDKIVGAYRRAE 672


>gi|29830085|ref|NP_824719.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces avermitilis MA-4680]
 gi|29607195|dbj|BAC71254.1| putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces avermitilis
           MA-4680]
          Length = 678

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 108/322 (33%), Gaps = 57/322 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE L+ R            +TP D+  L   L             G  R+  DP CGTG 
Sbjct: 169 YEFLLGRHLDANPRQYT--LTPGDLAALMADLA------------GPARSFLDPACGTGA 214

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                      +GQ+  PE   +    + +           +     
Sbjct: 215 LLRAVA-----------PGTDQELYGQDSAPELAELTALRLALH-------TRAAVRTAV 256

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L  D +   R    L +PPF ++            +     R+  G P  ++  + +
Sbjct: 257 GDSLRADAYETLRADAVLCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELAW 309

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H   +L      GG A +++  +        SG   IR  LL    + A++ALP    
Sbjct: 310 VQHALARLRD----GGTAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVIALPVGAA 361

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV- 457
              NI  +LW+L   +    + +V L +   +  +   +G+ R       R  +LD +  
Sbjct: 362 PPYNIPLHLWVLRRPERAPAQPEVLLADTAGVSEA--ADGRGRLDW-PAVRAAVLDAWHP 418

Query: 458 ------SRENGKFSRMLDYRTF 473
                 +RE    SR +     
Sbjct: 419 FDRTGTTREEPGVSRSVPVIEL 440


>gi|57242351|ref|ZP_00370290.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
 gi|57017031|gb|EAL53813.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195]
          Length = 818

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 137/414 (33%), Gaps = 56/414 (13%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            ++ +    G ++I+ E   K+    F+  S          +    L   +   ++ AK 
Sbjct: 174 YIKNEVKKRGVNHINDELVKKLKD--FWKISS---EDAIRASIERTLSDLLDGSNNKAKK 228

Query: 114 I--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           I   +    +   I +L+    +  +    + I  + DT  +     +    I       
Sbjct: 229 IELLQKNVLNDQKIKKLKSNDWIEILTTILTDIYKYIDTESEEGQDILNLFFIAFNKYTG 288

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------ 224
                   TP  +      ++               + + D TCG+G FL  AM      
Sbjct: 289 KADKNQAFTPDHITDFMCRVVGVD----------RTKRVLDITCGSGSFLVQAMVKELSD 338

Query: 225 ----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                   +     +       +G E+E + + +    MLI         D + NI+ GS
Sbjct: 339 CKRGKTEKEAKELMEKVKKENIYGIEVEEKAYGLATTNMLIHG-------DGNSNIEFGS 391

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              K  F         L NPP+  K     +  + +   G     G   P      ++F+
Sbjct: 392 CFEKKEFIKAANPDIILMNPPYNAKPISIPEYYKNKWSKGAKE--GKEDPTKG---LVFI 446

Query: 340 MHLANKLELPPNGG---------GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            +L++ ++                + A++L  S      + S    I+  +LEN+ +EA+
Sbjct: 447 QYLSDIIKEINEEREAKNEARKEVKLAVLLPMSAAI--GSKSDIKNIKEAMLENNTLEAV 504

Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             LP ++F+   +++    + +  K                +   + +G K++ 
Sbjct: 505 FTLPAEVFYPGASVSACCMVFTLGKPHINTDG---TTNETFFGYFKEDGFKKKK 555


>gi|256026504|ref|ZP_05440338.1| N-6 DNA methylase [Fusobacterium sp. D11]
 gi|289764516|ref|ZP_06523894.1| type I restriction modification system M subunit [Fusobacterium sp.
           D11]
 gi|289716071|gb|EFD80083.1| type I restriction modification system M subunit [Fusobacterium sp.
           D11]
          Length = 250

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 106/275 (38%), Gaps = 33/275 (12%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +L+  ++       +  +++  +LS D      +   L+NPPF       K +V++  
Sbjct: 1   MNLLLHDMK-------TPKLKRIDSLSTDYSEENDYSLVLANPPF-------KGSVDESL 46

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +  L R    + K     +LF+      L+     GGR A+++    LF   A +    
Sbjct: 47  LSNTLTR----MVKTKKTELLFIALFLRLLK----IGGRGAVIVPDGVLF--GASNAHKN 96

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +R+ L+EN+ +EA++++P+ +F     ++T + I +          V   + T       
Sbjct: 97  LRKELIENNQLEAVISMPSGVFKPYAGVSTGILIFTKT-GNGGTDNVWFYDMTADGY--- 152

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           +   KR  + ++    I++ + + EN K  +  D   F    +     +   + L     
Sbjct: 153 SLDDKRNPVEENDIPDIIERFSNLENEKDRKRTDKSFF----VPKQEIVDNDYDLSINKY 208

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYG 530
             +  +    +   +      ++ K + + +    
Sbjct: 209 KEIVYEKVEYEEPKVILQKLEELSKSIDENLKELK 243


>gi|78776736|ref|YP_393051.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78497276|gb|ABB43816.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
          Length = 669

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 139/444 (31%), Gaps = 91/444 (20%)

Query: 120 FSSTIARLEK-----AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               +++L          ++    +   + +        +M  +Y   + ++     +  
Sbjct: 297 LDKEVSKLIDGKASINKQIFTFIYHNIFLSIDAMAGHLDIMGEMYSEFL-KYALGDGKEI 355

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
              +TP  +  + T +L    ++           + D   G+ GFL  +M  + D    +
Sbjct: 356 GIVLTPPYITKMMTTILGVNQNS----------KVMDLATGSAGFLISSMEMMIDDAEAN 405

Query: 235 KIPPIL------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                                G EL  E   +    M++R        D S NI +G+T 
Sbjct: 406 YGKETTAAKKKIDIIKKEQLLGVELNAEMFTLAATNMILRG-------DGSSNIHKGNTF 458

Query: 283 SKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +     +T  + +  L NPPF                                  M F+ 
Sbjct: 459 NTPEQLYTSFKANKLLLNPPFSYDENG----------------------------MPFIA 490

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              +K+E     GG  AI++  S        S      + +L+   ++A + +PTDLF  
Sbjct: 491 FGLDKMEK----GGLGAIIIQDSAGSGKATKSN-----QAMLKKHTLKASIKMPTDLFQP 541

Query: 401 -TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
              + T +++L   K  +    V+ I+        RN+G KR      +  +    Y   
Sbjct: 542 MAGVQTSIYVLEAHKPHDFEQTVKFID-------FRNDGYKRTSRALQEIDEPTKRYAD- 593

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
                   +       +  KV  P  ++ +  +  +    +D  + +   +     L+  
Sbjct: 594 --------IVKIYKAGKNAKVEAPWNLNEVYIEDFITPSGSDWNFDQHKTIDSKPTLEYF 645

Query: 520 KPMMQQIYPYGWAESFVKESIKSN 543
           K  +     +  +    +   K  
Sbjct: 646 KKTVSDYLSWEVSNILKQRGDKGK 669


>gi|227499337|ref|ZP_03929449.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
 gi|227218590|gb|EEI83828.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
          Length = 295

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 53/303 (17%), Positives = 108/303 (35%), Gaps = 54/303 (17%)

Query: 216 TGGFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TGGFLT  +  +         +       +G E +   + +C+  MLI  ++        
Sbjct: 1   TGGFLTSWLKELRKQVKTVADEGAFSKSIYGIEKKQFPYMLCITNMLIHDMDL------- 53

Query: 274 KNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
             I   ++L +D        +F   L NPP+G   ++D               F   L  
Sbjct: 54  PEIYHDNSLLRDVLDYTDEDKFDVILMNPPYGGSEKEDVKNH-----------FPADLAS 102

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                + F+  +  +L+      GR A++L    LF   + + +  I++ LLEN  +  I
Sbjct: 103 SETADL-FMSVIMYRLKEK----GRVAVILPDGFLF--GSDNAKLNIKKNLLENFNLHTI 155

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           + +P  +F   T+I T +    N    +     ++ +  D + +      K + +     
Sbjct: 156 IRMPNSVFAPYTSITTNILFFDNTGETKETWFYRM-DMPDGYKNF----SKTKPMKLAHF 210

Query: 450 RQILDIYVSRENGKF------------------SRMLDYRTFGYRRIKVLRPLRMSFILD 491
            +++D +  RE  +                   S   D   + +    +L P+ + +   
Sbjct: 211 DKVIDWWDKREKIEIDGFYKAKKFTKKELAEDLSYNFDQCGYPHEEEVILDPMDLIYEYQ 270

Query: 492 KTG 494
           +  
Sbjct: 271 EER 273


>gi|293189376|ref|ZP_06608099.1| ribosomal protein L11 [Actinomyces odontolyticus F0309]
 gi|292821839|gb|EFF80775.1| ribosomal protein L11 [Actinomyces odontolyticus F0309]
          Length = 279

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 76/240 (31%), Gaps = 60/240 (25%)

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                   V     H K    L   G E   +T  +    + +  L  D        I+Q
Sbjct: 1   MFVQCAKFVECH--HEKASRKLSLFGTEKTGDTIPLAKMNLPLHGLSGD--------IRQ 50

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            ++ S+D +                                             +G+ ++
Sbjct: 51  DNSYSEDPYKAD------------------------------------------NGNFIW 68

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +      L    +  GRA  V+++S    G     E +IR+ L+E+  ++ +VA+  + F
Sbjct: 69  IQQFYAAL----SAKGRAGFVMANSACDTG---HSEKDIRQRLIESGTVDVMVAVGPNFF 121

Query: 399 FRTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           +   +   LW L   K    R   V  I+A  ++  I    +       +    I+ +Y 
Sbjct: 122 YTVTLPVTLWFLDKAKLGTAREDTVLFIDARHVFYQIDRAHRDFTAEQIEFISNIVRLYR 181


>gi|282918167|ref|ZP_06325909.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus C427]
 gi|282317958|gb|EFB48325.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus C427]
          Length = 207

 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 16  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 75

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 76  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 134

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 135 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 194

Query: 162 LIRRFGSEVSEG 173
           LI RF +   + 
Sbjct: 195 LIGRFAATAGKK 206


>gi|297561636|ref|YP_003680610.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
 gi|296846084|gb|ADH68104.1| N-6 DNA methylase [Nocardiopsis dassonvillei subsp. dassonvillei
           DSM 43111]
          Length = 709

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 44/278 (15%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             +E L+ R   +    +     P ++  L   L       +     G   T+ DP CG 
Sbjct: 171 TAFERLLSRL--DQRSPSGSHTVPPELADLMVVL-----AGIANAGSGPEDTVADPACGR 223

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG L  A                    GQ+ +  +  +    +               ++
Sbjct: 224 GGLLLAAAR-----------GGRRALLGQDRDAASVWLAALRLAFAG-----ALTGEADL 267

Query: 277 QQGSTLSKDLFTGKR------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           +    L    F              +  PPFG++    +       +  E  R+  G+P 
Sbjct: 268 RVSDALRLPAFAPDAPDGADGADAVVCAPPFGERNWGVE-------ELAEDPRWTYGVPP 320

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             +  + ++ H  + +     GG    ++   +             IRR LL      A+
Sbjct: 321 RLESDLAWVQHCLSLVRP---GGSAVVLMPPGAAQRPSGRR-----IRRSLLRAGAFRAV 372

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
           V+LP        +   LW+L   + +     V L++  
Sbjct: 373 VSLPPGFAAHYAVPLQLWVLRRPERDAVPAPVLLVDTA 410


>gi|55820899|ref|YP_139341.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus LMG 18311]
 gi|55736884|gb|AAV60526.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus LMG 18311]
          Length = 210

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 75/222 (33%), Gaps = 29/222 (13%)

Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           +  RF   G+   +     FL H     +      GR AI L    LF G A    S   
Sbjct: 13  DDPRFREYGIAPKTKAEDSFLSHCLYHTKES----GRVAITLPHGVLFRGAAKGRIS--- 65

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + L++   IE+++  P  LF  T I   + IL   +       +  ++A+  +  ++N  
Sbjct: 66  KTLIDKHQIESVIGFPDKLFLNTGIPVCVLILKKNRANS---DILFVDASQGFEKMKN-- 120

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
             ++ +  +   +I +  + R+                   +   +   + L+       
Sbjct: 121 --QKQLRPEDIYKITETVIHRK---------AVDKYSHLATLEEVIENDYNLNIPRYV-- 167

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
               T+ +  P+  +     +  +  +I       +   + +
Sbjct: 168 ---DTFEEEEPIDLADIQGQIDEVDAEIAKANQTLANHFKEL 206


>gi|308272576|emb|CBX29180.1| hypothetical protein N47_J01610 [uncultured Desulfobacterium sp.]
          Length = 226

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 52/259 (20%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVI--LP-FTLLRRLECALEPTRSAVRE 57
           M+    + + + + +W     L  D     +G  +  L     L+  +   +P  +    
Sbjct: 1   MSNEASNTSGIISKVWSFCNTLRDDGVG--YGDYLEQLTYLLFLKMADEFSKPPHNRELN 58

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL---GSTNTRNNLESYIASFSDNAKAI 114
                                       Y+  +L         ++  + +   S + K I
Sbjct: 59  ------------------------IPKAYTWESLTVKRGAELESHYTTLLRELSHS-KGI 93

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F  +  +++    L+K+       +         +   IYE L+ +   +   GA
Sbjct: 94  LGQI-FIKSQNKIQDPAKLFKLIDMIDKEQWTVMGTD--IKGKIYEGLLEKNAEDTKSGA 150

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----- 229
             + TPR ++    A +           P  ++++ DP CGTGGF   A +++++     
Sbjct: 151 GQYFTPRALIKAMVACV----------QPQPMKSIADPACGTGGFFLAAYDYISNSENFT 200

Query: 230 -CGSHHKIPPILVPHGQEL 247
                 +       +G E+
Sbjct: 201 LTKEQKEYLKYKTFYGNEI 219


>gi|268324774|emb|CBH38362.1| hypothetical protein BSM_18390 [uncultured archaeon]
          Length = 186

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 49/159 (30%), Gaps = 15/159 (9%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              +WK A+ L  +    ++  V+L    L+ +  + +     ++E+           E 
Sbjct: 11  EQKLWKAADKLRSNMDAAEYKHVVLGSIFLKYISDSFDERHEQLQEQVSEGADPEDRNEY 70

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTN-------TRNNLESYIASFSDNAKAIFEDFDFSSTI 124
                   F+   +     L             ++    I   + + K +        T+
Sbjct: 71  ---SMENIFWVPEKARWCYLQKNAKQPEIGKIIDDAMELIEKENPSLKGVLPKDYARPTL 127

Query: 125 ARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
            +      L ++      I L   ++    ++  +YE+ 
Sbjct: 128 DK----RRLGELIDLIGTIGLGDYESKSKNILGRVYEYF 162


>gi|111219762|ref|YP_710556.1| putative type I restriction system adenine methylase [Frankia alni
           ACN14a]
 gi|111147294|emb|CAJ58942.1| putative type I restriction system adenine methylase [Frankia alni
           ACN14a]
          Length = 712

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 99/274 (36%), Gaps = 48/274 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++E L  R+    S    +  TP  V  L   L      A          T+ D  CG G
Sbjct: 165 LFEVLRVRYREVYSRQVAE--TPPAVADLMVGLAGLGRMAG-------ELTVLDSACGVG 215

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           G L  A           ++  +    GQ+++P    +  AG+L+   +          I 
Sbjct: 216 GLLEAA-----------RVAGVRRLLGQDVDPTAARITGAGLLLHGAD--------ARIV 256

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              +L  D F G +    L  PP G++     + V+          +G G+P   +  + 
Sbjct: 257 AADSLLADAFVGGQADVVLCGPPSGQRAWPHDELVDSPW-------WGYGVPPRGEPELA 309

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES--EIRRWLLENDLIEAIVALPT 395
           ++ H           G R A VL    L    A S  +   IR  LL    + A++ LP 
Sbjct: 310 WVQHCLAH-------GRRGAPVL---VLMPAAAASRPAGRRIRANLLRAGALRAVLGLPL 359

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           DLF     A  LW+L     +    +V +  A++
Sbjct: 360 DLF-GAGSAPDLWVLRVPGDDVPPAQVLMGLASN 392


>gi|269125657|ref|YP_003299027.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268310615|gb|ACY96989.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 698

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 95/268 (35%), Gaps = 40/268 (14%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E S     + TP  +  L   LL           P   R + DP CG G  L  A  H  
Sbjct: 167 EDSTSGGTYGTPPKLADLMARLLKP------SGGPYPAR-VLDPACGGGTLLAAAARH-- 217

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          GQ+  P         +L+   E++        +++G +L  D F+
Sbjct: 218 ---------GATFLAGQDSLPVQARRSTVRLLLAAPEAEVT------VREGDSLRADAFS 262

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G      L NPP+G       D      +     R+  GLP  ++  + ++ H    LE 
Sbjct: 263 GVTVDGVLCNPPYG-------DRDWGHDELAYDPRWAYGLPARAESELAWVQHALAHLEP 315

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GG A ++L  +      A S    +R  LL    + A++ALP       +I  ++W
Sbjct: 316 ----GGLAVMLLPPAV----AARSSGRRVRGALLRGGAVRAVIALPPGAAVPLHIGLHVW 367

Query: 409 ILSNRKTEE-RRGKVQLINATDLWTSIR 435
           +L     +      V  ++   +  S R
Sbjct: 368 VLQRPDPKAGPPEAVLFVDTAAVPESGR 395


>gi|197294500|ref|YP_001799041.1| Restriction enzyme alpha subunit [Candidatus Phytoplasma
           australiense]
 gi|171853827|emb|CAM11772.1| Restriction enzyme alpha subunit [Candidatus Phytoplasma
           australiense]
          Length = 587

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 109/348 (31%), Gaps = 67/348 (19%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            ++    L+Y + +    I     +    VM   Y   I+    +  +     +TP  + 
Sbjct: 244 NKIPNNNLVYFLTELKEKIMPFIHSDQWDVMGTFYREFIKYVTED--KQTGLVLTPPHIT 301

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPILV 241
                L       +          + DP CGTGGFL  AM ++     +    ++     
Sbjct: 302 DFFCELADIQSSDI----------VLDPCCGTGGFLIAAMKYMCQKAKNEKQIEVIKTKQ 351

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--TLSKDLFTGKRFHYCLSNP 299
             G E   +        M++         D   NI  G       D F   +      NP
Sbjct: 352 LLGIEKRKDMWLHASVNMMMHG-------DGHTNIFYGDCFKFKIDNFKHNQPTVVFLNP 404

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+ +  E                             + F+      LEL    G   AIV
Sbjct: 405 PYNEPSE----------------------------QLRFIQKA---LELTTPKGQVIAIV 433

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418
            +S+        +  +  ++ +L N  + A  + P +LF     + T + I +     + 
Sbjct: 434 QASAT----GQSTAVNNAKKEILNNHTLLASFSCPKELFHGIAGVITNILIFAAHVPHDS 489

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDD---QRRQILDIYVSRENGK 463
           +    L      +       +K + I  +    + + +DIY +++  K
Sbjct: 490 KKNTFL----GWFKDDGFIKQKNKRIEKNWKLIKDKWIDIYRNKKEVK 533


>gi|313903009|ref|ZP_07836404.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965]
 gi|313466733|gb|EFR62252.1| N-6 DNA methylase [Thermaerobacter subterraneus DSM 13965]
          Length = 906

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 53/309 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +   +E     FGS        + T R +     A+L                 + DP
Sbjct: 305 DSIGKAFESF---FGSIFRGELGQYFTMRQLARFIVAMLDIDHRD----------YVIDP 351

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHAVCVAGMLI 261
           T G+GGFL + +  V                          +G E+ P    +C   +L+
Sbjct: 352 TAGSGGFLLEVLLQVWHKIDKDFAGRSDLERLKIDFALHKVYGIEIHPVLARICKINLLL 411

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFT--------GKRFHYCLSNPPFGKKWEKDKDAVE 313
                    D   NI+   +    +F           RF   + NPPFG   ++  + + 
Sbjct: 412 H-------HDGHTNIEGDRSCLDSIFNLPRLNPPTAGRFTRVVGNPPFGDTVKEGDEDLL 464

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
            ++       F     +     +     +  +       GGR  +++    L N    S 
Sbjct: 465 GQNSL---SNFHVAEGRT---QVPSEHVILERAIQFLADGGRLGLIIPDGILNNPGDHSN 518

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNI--ATYLWILSNRKTEERRGKVQLINATDLW 431
             ++RR+L+ N +IEAIV+LP   F ++     T +      +  E   +V   NA   +
Sbjct: 519 CPQVRRFLVMNGVIEAIVSLPDYAFRKSGAQNKTSILFFRKFEPHE---RVAFKNA---Y 572

Query: 432 TSIRNEGKK 440
            + R  GK 
Sbjct: 573 DAAREAGKN 581


>gi|282907752|ref|ZP_06315594.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282328657|gb|EFB58928.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 200

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +   ++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKAELIDQVGYFIEPQDLFSAMIREIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEG 173
           LI RF +   + 
Sbjct: 188 LIGRFAATAGKK 199


>gi|16415962|emb|CAC85954.1| AloI restriction modification enzyme [Acinetobacter lwoffii]
          Length = 1262

 Score =  100 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 158/474 (33%), Gaps = 53/474 (11%)

Query: 112 KAIFEDFDF---SSTIARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           +  F + DF        RL  + A +L K+ + +  I L   T  ++ + +++E  + + 
Sbjct: 355 QKFFTNNDFSFLDVHNERLFYQNAEVLLKVLQMWQDIRLTSATGHNQFLGDMFEGFLDQ- 413

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              V +    F TP  +      L+  P ++L +++P     + D  CG G FLT+    
Sbjct: 414 --GVKQSEGQFFTPMPICRFI--LMSLPLESLVRDNPTPPMAV-DYACGAGHFLTELALQ 468

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ--QGSTL-- 282
                  HK       + +        +     L +  +        + IQ   G  L  
Sbjct: 469 FQPLLEQHKPLAAPAEYHKS----MVGIEKEYRLSKVAKVSAFMYGHQGIQVCYGDGLVN 524

Query: 283 SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           S + F   R   F   ++NPP+  +     + + +E +            + ++    F 
Sbjct: 525 SHEAFPDIRDGHFDLLVANPPYSVR--GFLETLPEEDRKAYSLTNTINDTETANSIETF- 581

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                + +     GG AAI+L +S L NG   S     R  LL+   I AI    +  F 
Sbjct: 582 --FIERAKQLLKSGGVAAIILPASILSNGG--SAYIRAREILLQYFDIVAIAEFGSGTFG 637

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD--------QRRQ 451
           +T   T    L  ++T+    +       + + S     +K+ +  D             
Sbjct: 638 KTGTNTVSLFLRRKRTQPDTAEHYRERIEEWFKSCTTSKRKQVLYKDGHLIEKYCAHINV 697

Query: 452 ILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
            L  Y S      + S M       Y            F      LA L     ++ LS 
Sbjct: 698 PLADYQSFLRGEAEGSWMSHEHFQSY---------HDKFDTSTE-LANLRKQRKFKALSE 747

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL--KVKASKSFIVAFI 561
             Q+   +I K  +  ++     + +            L  +  +    +  F+
Sbjct: 748 YEQTA--EIAKRYLGYVHSIERDKLYHFCLASDQTNPVLIIRSPSGTKEMKQFL 799


>gi|269219200|ref|ZP_06163054.1| restriction enzyme BgcI subunit alpha [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211347|gb|EEZ77687.1| restriction enzyme BgcI subunit alpha [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 666

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 129/426 (30%), Gaps = 80/426 (18%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDL--------ESFVKVAGYSFYNTSEYS------- 87
           R E  L+  R+A    +                   + +      ++N    +       
Sbjct: 172 RAEVQLDDVRAAAERLHEGMRNYGSVENDRKAPLVSAILLALQNPYFNIDRLTSVSPGNN 231

Query: 88  LSTLGSTNTRNNLESYIASFS----DNAKAIFEDFDFSSTIARLEKAGL---------LY 134
                     +  E Y+ S +         + + F F     +L ++           + 
Sbjct: 232 YQVWDGRIIYDAAEQYMKSEALMPQAKIGTLLDQFSFIKQAPQLNRSHRDLGESPLKWMT 291

Query: 135 KICKN-FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           +I +N        P      V+ N Y   I  +G     G    +TP  V  L   L+  
Sbjct: 292 RILENDVYHAVTDPSMTAFDVLGNFYHEFIS-YGGGDGSGLGIVLTPEHVTTLMAELIDV 350

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HKIPPILVPHGQELEP 249
                          + DPT GT  FL  AM  + D         +       +G EL+ 
Sbjct: 351 N----------ATDYVLDPTAGTASFLIAAMQRMFDDAGDNAAMREDIRKNRLYGIELQD 400

Query: 250 ETHAVCVAGMLIRR-----LESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFG 302
           +  A+    M++R         D   +      +G     D     G  F   L NPP+ 
Sbjct: 401 KLFAIGTTNMILRGDGKANFRRDSIFEAPMAEMRGDMKLSDGTIALGHGFTKVLLNPPYS 460

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
           +               G+  R        +   + F+      L      GG+ A+++  
Sbjct: 461 QA-------------KGKNTR--------NLSELAFIERALEFLNP----GGKLAVIVPQ 495

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRG 420
           S +        +   +R++LE+  +E ++ +    F  +     T + I +  +      
Sbjct: 496 SAMV--GKTKEDKARKRYILEHHTLETVITMNPMTFTNSGHTPHTVIAIFTAGRKHREDQ 553

Query: 421 KVQLIN 426
           KV+ +N
Sbjct: 554 KVRFVN 559


>gi|313892186|ref|ZP_07825779.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E]
 gi|313119324|gb|EFR42523.1| N-6 DNA Methylase [Dialister microaerophilus UPII 345-E]
          Length = 594

 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 130/374 (34%), Gaps = 57/374 (15%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R++            TP  +V L   +L                 + D   G G F+T 
Sbjct: 114 LRKYAENS--------TPDTLVDLVIKILNIN----------PGDKVCDICGGIGNFITK 155

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA----GMLIRRLESDPRRDLSKNIQQ 278
           A  ++ +           + + +E+   T A+ V      +L+   +       + NI  
Sbjct: 156 A--YLKE--------KKAIYYSKEIN--TQAISVMEIRVDVLLHDDKEKNIYTEAGNIF- 202

Query: 279 GSTLSKDLFTGKRF-HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                 D     +F      N P+  +   DK +V+       +    PG+ K +    L
Sbjct: 203 -DLFFNDRVKNDKFFDKIFGNYPW--RIFIDKYSVKNIDFLKYIDSKVPGILKRNMSDWL 259

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F + + + L+          I+ + S        S     R++ L N LIEAI+ALP +L
Sbjct: 260 FNILMIHMLKDTGKA---VGIMTNGSIW---NQMSDCKNARKYFLSNGLIEAIIALPANL 313

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F  T+I T L + S         K+++I+AT +          ++I + +    I   Y+
Sbjct: 314 FKSTSIPTVLIVFS-----HGNKKIKMIDATSICVENMR----QKIFSTENIETIYKAYL 364

Query: 458 SRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD-KTGLARLEADITWRKLSPLHQSFWL 516
             E  + S  ++           + P R    +        L+  +T         +  L
Sbjct: 365 --EETENSIFVNVEDILKDEELNIHPKRYLTHITLPENGKELKTVLTDLYRGSNISAKEL 422

Query: 517 DILKPMMQQIYPYG 530
           D LK     +Y Y 
Sbjct: 423 DKLKTDKPTLYRYV 436


>gi|149176155|ref|ZP_01854771.1| type I restriction-modification system, M subunit, putative
           [Planctomyces maris DSM 8797]
 gi|148845022|gb|EDL59369.1| type I restriction-modification system, M subunit, putative
           [Planctomyces maris DSM 8797]
          Length = 104

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/87 (57%), Positives = 65/87 (74%), Gaps = 4/87 (4%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK-NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            LSNPPFG +W+K +  ++KEH+ +G  GRFGPGLP++SDGS+LFL    +K+    +GG
Sbjct: 1   MLSNPPFGVEWKKIQKEIKKEHEQDGFNGRFGPGLPRVSDGSLLFL---ISKMRPAKDGG 57

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRW 380
            R  IVL+ SPLF G AGSGESEIRR+
Sbjct: 58  SRFGIVLNGSPLFTGNAGSGESEIRRY 84


>gi|311899430|dbj|BAJ31838.1| hypothetical protein KSE_60720 [Kitasatospora setae KM-6054]
          Length = 652

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/304 (18%), Positives = 102/304 (33%), Gaps = 48/304 (15%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E ++ R+    +   E  +TP  +  L   L+             +   ++DP CGT  
Sbjct: 129 FESVLARWKDAYARQVE--VTPEPIAALMVELVAP-------VGAPLTGPVFDPACGT-- 177

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                                    GQE++P+   +    +       D     +  ++ 
Sbjct: 178 ---------GTLLLAAAQAGATRLIGQEIDPDLAELSRRRL-------DLAGAGTVTVEA 221

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L+ D F        + NPPFG++                  R+  GLP   D  + +
Sbjct: 222 GDSLTADAFPDCSAPAAVCNPPFGQRHWG-------RDGLAYDSRWAYGLPAQGDPELAW 274

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L H+   L      GGRA I +  +             IR  L+ N  ++A+++LP    
Sbjct: 275 LQHVLAHLSP----GGRAVIAMPPAAASRPSGR----RIRAELVRNGKLQAVISLPPGSA 326

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
              ++   LW+L        R  V  + A    T      +         R ++   ++ 
Sbjct: 327 STHSMGIDLWVLGYG----TRTSVLFLTAARH-TDPAAGQRHAVDWPSVHR-EVTTAWLD 380

Query: 459 RENG 462
            ++G
Sbjct: 381 FQHG 384


>gi|251773333|gb|EES53882.1| probable N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 796

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 64/338 (18%), Positives = 114/338 (33%), Gaps = 60/338 (17%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F  T   L    + + + K    + L    V +  +   +E+    FGS        + T
Sbjct: 148 FPDTRITLPDKKI-FDVVKILQDVSLMGSDVDN--IGAAFENF---FGSIFRGELGQYFT 201

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------ 227
            R +     ++L    +            + DPT G+GGFL +A+  V            
Sbjct: 202 MRQIARFTVSMLEITHEDF----------VLDPTAGSGGFLLEALLQVWHGVDTKFHGQS 251

Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                       +L  +G E+      +C   +L+         D   NI+   +     
Sbjct: 252 DQQIIRTKNDFALLRVYGIEIHDILSRICKINLLLH-------HDGHTNIEGDRSCLDTY 304

Query: 287 FTG-------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----GRFGPGLPKISDGS 335
           FT        ++F   + NPPFG + E+  + +  E+         GR    +P      
Sbjct: 305 FTKPRLRLCFEQFSKVVGNPPFGDEVEEGDEDLLGENSLENFEIAKGRQK--VPSE---- 358

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
                 +  +       GG+  +VL      N    S    +R +L +   IEAIV+LP 
Sbjct: 359 ----HVILERAIDFLEPGGQLGLVLPDGLFNNQGELSNCPRVRSFLAKQGFIEAIVSLPD 414

Query: 396 DLFFRTNI--ATYLWILSN-RKTEERRGKVQLINATDL 430
             F ++     T +       K ++      L +A ++
Sbjct: 415 FAFRKSGAQNKTSILFFRRFTKLQKHTFDQLLEDAIEM 452


>gi|187729745|ref|YP_001837336.1| type I restriction-modification system M-subunit-like protein
           [Acidithiobacillus caldus]
 gi|167782130|gb|ACA00201.1| type I restriction-modification system M-subunit-like protein
           [Acidithiobacillus caldus]
          Length = 856

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 122/480 (25%), Gaps = 137/480 (28%)

Query: 42  RRLECALEPTRSAVREKYLAFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           RRL+   E  R+  R+++        +I  +      G +F   S+     +    +  +
Sbjct: 103 RRLKEIRESLRAFNRKEFQDLLFVCHSILRDVHKMDPGRAFDTISKILFIKMYVERSGQH 162

Query: 100 ---LESYIAS-------FSDNAKA-IFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHP 147
                 Y+                 +FE          L   +  L    + F  I    
Sbjct: 163 GTFTTDYLDRRAAVRLPTDPAVHDGLFEQTKAYYKADDLFAASDKLDISEETFRRIVKQL 222

Query: 148 DTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +        D +    +E  +    +        F TPR VV     LL          +
Sbjct: 223 ERFDLSKTGDDIKGLAFEKFLG---TTFRGELGQFFTPRPVVEFMVDLL----------N 269

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------------------- 241
           P     + DP  G+GGFL  A  HV                                   
Sbjct: 270 PREGERICDPASGSGGFLIRAFEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEE 329

Query: 242 ------------------------------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271
                                          +G + EP         M++         D
Sbjct: 330 AFSRLNRELLPSDDNNKPIDTRVGRLAWQCIYGTDAEPRAARTAKMNMIMHG-------D 382

Query: 272 LSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR------- 323
               I     L   +   G RF   L+NPPFG    +D+     +               
Sbjct: 383 GHGGIHYHDGLLDINGIFGGRFDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCR 442

Query: 324 ----------------------------FGPGLPKISD-GSMLFLMHLANKLELPPNGGG 354
                                       F  G  K +    ++F+    N L+     GG
Sbjct: 443 EGGYGPAWEESHQSLLAAAAARKPILDLFEIGKGKKNRPTELIFVERCLNLLKP----GG 498

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
           R  IVL    L N         +RRW      + A+V+LP   F      +   L  L  
Sbjct: 499 RMGIVLPDGNLNNPSLAW----LRRWAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRK 554


>gi|302530957|ref|ZP_07283299.1| predicted protein [Streptomyces sp. AA4]
 gi|302439852|gb|EFL11668.1| predicted protein [Streptomyces sp. AA4]
          Length = 583

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 88/271 (32%), Gaps = 59/271 (21%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L  RF    +       TP     L   L                  + DP CG G 
Sbjct: 126 FEQLCDRFFEAHARRLS--PTPTAYADLMVRLTGA-----------KGAKVLDPACGFGS 172

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                                    GQ+++P+T  +    + +   +++        +  
Sbjct: 173 L--------------LLAAAATRARGQDVDPDTARIAGIRLRLHGADAE--------VYA 210

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              L  D F G+     L +PPF ++    ++ V          R+  GLP   +  + +
Sbjct: 211 ADALRADAFAGRLADVVLCDPPFNERGWGHEELVG-------DARWEYGLPPRGESELAW 263

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H    ++     GG  A+++  +        SG   IR  LL    + A+  L     
Sbjct: 264 VQHCLAHVKP----GGAVAVLMPGAA---AGRRSG-KRIRANLLRAGALRAVCTLAPG-- 313

Query: 399 FRTNIATYLWILSNRKTEERR-GKVQLINAT 428
                 T LW+L+  + E R    V + + T
Sbjct: 314 ------TDLWLLTRPEPERRAPATVLIADTT 338


>gi|50119533|ref|YP_048700.1| restriction enzyme subunit subunit [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610059|emb|CAG73499.1| restriction enzyme alpha subunit [Pectobacterium atrosepticum
           SCRI1043]
          Length = 623

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 115/346 (33%), Gaps = 70/346 (20%)

Query: 130 AGLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            G+  +I +                 V+   Y   + ++ +   +     +TP  +  L 
Sbjct: 268 GGVFKEIIRRICENVWPYINIYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPGHISELF 326

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---SHHKIPPILVPHG 244
                         + G    + D   GTGGFL  AM H+       +  +        G
Sbjct: 327 ----------SLLANVGPESRVLDICAGTGGFLISAMQHMLKKAVTEAQRQDIRRNRLIG 376

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPP 300
            E  P+  A+  + M++R        D   N+ Q S    D       G + +  + NPP
Sbjct: 377 IENSPKMFALAASNMILRG-------DGKANLHQASCF-DDAIIRSVKGMKPNVGMLNPP 428

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAA 357
           + +                            SD  +    F+  + N L+    G    A
Sbjct: 429 YAQS--------------------------KSDAELHELYFVKQMLNCLQPGSIG---IA 459

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           IV  S  +           +R  LL++  ++A++++P +LF    + T + +    +  E
Sbjct: 460 IVPMSCAISPN-------PVREELLKHHTLDAVMSMPPELFNSVGVVTCIMVWIAGQPHE 512

Query: 418 RRG-KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460
               K        D +   +++G+        D R + + +Y +RE
Sbjct: 513 YSDRKTWFGYWRDDGFVKTKHKGRIDINHRWPDIRDRWVAMYRNRE 558


>gi|124009161|ref|ZP_01693843.1| N-6 DNA methylase [Microscilla marina ATCC 23134]
 gi|123985259|gb|EAY25186.1| N-6 DNA methylase [Microscilla marina ATCC 23134]
          Length = 733

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 110/359 (30%), Gaps = 69/359 (19%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           ++            +E  +  +          + TPR++V     +L   + +       
Sbjct: 313 INLKDTDLDSKGKAFETFMGSY---FRGDFGQYFTPRNIVQFIINVLPITNHSR------ 363

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVA----------------------DCGSHHKIPPILVP 242
               + D +CG+GGFL   +  +                       D   +         
Sbjct: 364 ----VLDTSCGSGGFLLYTLEKIRKQADEYFENQKGDPENDIAEGADHHRYWHDFVSKKL 419

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD----------LFTGKRF 292
            G E+  +        M+I         D   N+     L KD           F    F
Sbjct: 420 FGIEINEQIARTAKMNMIIHN-------DGQTNVIAADGLLKDEALRQRSHNREFKYNSF 472

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------DGSMLFLMHLANK 345
            + ++NPPFG   ++ + A   ++K G            +          +LF+      
Sbjct: 473 DFIVTNPPFGSVVKQLEKAYLHQYKLGNKDVSWLDTKNSAVQGRANQSTEVLFIEQCWYF 532

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L+     GG  AIV+    L N         +R  + E   I A+V++P   F  T    
Sbjct: 533 LKE----GGTLAIVVPDGILTNSSLQY----VRDRIEEWYRIVAVVSMPQTAFAHTGAGV 584

Query: 406 YLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
              +L  +K ++   +    + +         +  +      + +++ I+  +   EN 
Sbjct: 585 KSSVLFLKKWDKATTESLQSIKDRLKNNIKTTHHYEATIERIEKEKKDIIKAHRGFENT 643


>gi|329937004|ref|ZP_08286633.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces griseoaurantiacus M045]
 gi|329303611|gb|EGG47496.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces griseoaurantiacus M045]
          Length = 724

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 134/421 (31%), Gaps = 61/421 (14%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E S  +  + TP  +  L   LL           PG    + DP CG+G  L  A     
Sbjct: 174 EDSGASGAYRTPAPLADLLARLL-----------PGAPTRVLDPACGSGSLLAAAA---- 218

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                         +GQ++ P         + +   E D +      ++   +L  D F 
Sbjct: 219 -------RRGARELYGQDVLPVQARRSAVSLALTASEDDTKVT----VRAADSLRADAFP 267

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
                  L NPP+G +            +     R+  G+P  ++  + ++ H    L  
Sbjct: 268 ELLADAVLCNPPYGVRDWGHD-------ELAYDSRWAYGVPARAESELAWVQHALAHLTP 320

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
               GG AA++L  +             +R  L+ +  + A++ALP       ++   +W
Sbjct: 321 ----GGHAALLLPPATASRASGR----RVRAELVRSGALRAVLALPVGAAVPLHVPLQIW 372

Query: 409 ILSNRKTEER-RGKVQLINATDLWTS-----------IRNEGKKRRIINDDQR-RQILDI 455
           +L   +     R  V  ++  +                R  G +  +++ ++   + L  
Sbjct: 373 LLRRPEPGGPDRTSVLFVDTAETTMPAGPGDTGAAPRTRGSGGRAALLDWERISDRALRA 432

Query: 456 YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL-EADITWRKLSPLHQSF 514
           + +  +       +      R + V+  L     L    L R   A++   KLS   ++ 
Sbjct: 433 WHAFTDSP--DTFEGEPGVARAVGVVDLLDDMVDLTPARLVRASRAEVDPAKLSAEIEAS 490

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR----KDPR 570
            LD+++          +      +    +         ++   +  +         +D  
Sbjct: 491 RLDLVEASESLGRAADYDGWNAADGSARDWRTATVSDLARGGALTLLRTVPEGARGRDEE 550

Query: 571 A 571
            
Sbjct: 551 G 551


>gi|329941157|ref|ZP_08290436.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045]
 gi|329299688|gb|EGG43587.1| hypothetical protein SGM_5928 [Streptomyces griseoaurantiacus M045]
          Length = 680

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 100/302 (33%), Gaps = 52/302 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+ R            +TP  +  L   L             G  RT+ DP CGTG 
Sbjct: 169 FEFLLGRHLDANPRQYT--LTPAGLADLMAELA------------GPARTVLDPACGTGA 214

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                 P    +GQ+  PE  A       +  L              
Sbjct: 215 LLRAL-----------GRAPEQSLYGQDAAPELAA-------LAALRLALHTRALVRAAA 256

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L  D     R    L +PPF ++    +       +     R+  GLP  ++  + +
Sbjct: 257 GDSLRADAHESLRADVVLCHPPFNERNWGHE-------ELAYDPRWEYGLPARTESELAW 309

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H   +L+     GG A +++  +        SG   IR  LL    + A+VALP    
Sbjct: 310 VQHALARLKD----GGSAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVVALPAGAA 361

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               +  +LW+L        + +V L++        R     +       R  +LD +  
Sbjct: 362 PPHGVPLHLWVLRRPDRAPAQPRVLLVDTGAAAAEGRGGPDWQ-----AVREAVLDAWHE 416

Query: 459 RE 460
            +
Sbjct: 417 FD 418


>gi|57242478|ref|ZP_00370416.1| type I restriction-modification system, M subunit, putative
           [Campylobacter upsaliensis RM3195]
 gi|57016763|gb|EAL53546.1| type I restriction-modification system, M subunit, putative
           [Campylobacter upsaliensis RM3195]
          Length = 695

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 117/382 (30%), Gaps = 74/382 (19%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE---- 128
            +    +F   S+   + +     + +++  +  +        + F     I  L     
Sbjct: 194 KRNPAEAFSEFSKIIFTKMMDEKAKTDIKYKLEHYEFQKNRDEDKFALEKRIKGLYEKYK 253

Query: 129 -------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
                         A  +  + +N  GI      +   +   I+++ ++ F       A 
Sbjct: 254 KKDSNVFDNALILDADEIKFLVENLEGI--GLSKIELDIKGEIFQNFLKDF---FKGKAG 308

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP +VV           + L          + DP+CG+GGFL   + ++ +     K
Sbjct: 309 QFFTPFNVVRFVVGCFDITQNDL----------VLDPSCGSGGFLLQTLQYMQEKSKKLK 358

Query: 236 IPPILVP---------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---- 282
                           +G E+           M+I         D   N+     L    
Sbjct: 359 KKAQKRFWHSFAEKNLYGIEINGGISQTAKMNMIIH-------DDGHTNVITADGLDSFE 411

Query: 283 ----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSM- 336
                 + F    FH+  +NPPFG      K   E          F   +  K S   + 
Sbjct: 412 NFIRKNNKFQKNTFHFIFTNPPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLS 471

Query: 337 ------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                 LFL      L+     GG  A VL    L N         +R +LLE   + A 
Sbjct: 472 GQKSEILFLERYFEFLKE----GGIVACVLPDGILTNSSLQ----NVRDYLLERFYLLAS 523

Query: 391 VALPTDLF--FRTNIATYLWIL 410
            +LP   F  +   + + + +L
Sbjct: 524 FSLPQHTFSNYGAGVKSSILVL 545


>gi|237753064|ref|ZP_04583544.1| N-6 DNA methylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375331|gb|EEO25422.1| N-6 DNA methylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 694

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 110/386 (28%), Gaps = 80/386 (20%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS---FSDNAKAIFEDFDFSSTIARLE- 128
            +    +F   S+   + +           Y      F  N     + F     I  L  
Sbjct: 191 KRNPAEAFSEFSKIIFTKIMDEKIAEYDADYKLKYYEFQKNRDE--DKFALEKRIKGLYQ 248

Query: 129 ----------------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                            A  +  + +N  GI          +   +++     F      
Sbjct: 249 KYKEKDSNVFDNALILDADEIKFLVENLEGI--SLSETDLDIKGKVFQKF---FADFFKG 303

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A  + TP ++V           D L          + DP+CG+GGFL   + ++ +   
Sbjct: 304 TAGQYFTPLNIVRFMVECFDIRQDDL----------VLDPSCGSGGFLLQTLQYMQEKSK 353

Query: 233 HHKI----------PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             K                 +G E+           M+I         D   N+     L
Sbjct: 354 KLKKKEAQKRFWHSFAEKNLYGIEISGGISQTAKMNMIIH-------DDGHTNVITADGL 406

Query: 283 --------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISD 333
                     + F    F++  +NPPFG      K   E          F   +  K S 
Sbjct: 407 DSFENFIRKNNKFQKNTFNFIFTNPPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSP 466

Query: 334 GSM-------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
             +       LFL      L+     GG  A VL    L N         +R +LLE   
Sbjct: 467 KDLSGQKSEILFLERYFEFLKE----GGIVACVLPDGILTNSSLQ----NVRDYLLERFY 518

Query: 387 IEAIVALPTDLF--FRTNIATYLWIL 410
           + A  +LP   F  +   + + + +L
Sbjct: 519 LLASFSLPQHTFSNYGAGVKSSILVL 544


>gi|300934054|ref|ZP_07149310.1| N-6 DNA methylase [Corynebacterium resistens DSM 45100]
          Length = 211

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 22/190 (11%)

Query: 13  NFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLE 70
             +W  A++L          +   +L    L   E   E  R  V  K  A   + +   
Sbjct: 11  ATLWSAADELRANSKLTPVQYRDPVLGLVFLAYAENRFETVRGEVEAKSSARNPATVAD- 69

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFEDFDFSST 123
                A    Y   E  LS L       ++          I   +   K +         
Sbjct: 70  ---YKAKSVLYVPDESRLSHLVGLPEGADIGKATDEAIKAIEEANPELKDVLPR-----G 121

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             +LE++  L ++ + F+     P  +       IYE  +  F ++  +G  ++ TP  +
Sbjct: 122 YQKLERS-TLIELLRLFA---PLPTQLAGDAFGFIYEDFLSNFAAQEGKGGGEYFTPYSI 177

Query: 184 VHLATALLLD 193
           V L   +L  
Sbjct: 178 VRLIVEILQP 187


>gi|323481372|gb|ADX80811.1| Type I restriction modification system protein HsdMI [Enterococcus
           faecalis 62]
          Length = 181

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            AIVL    LF G A   E  IR+ LLE+  I A++ +P +LFF T+I T + +L   + 
Sbjct: 1   MAIVLPHGVLFRGAA---EGVIRQKLLEDGSIYAVIGMPANLFFGTSIPTTVIVLKKNRQ 57

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFG 474
                 V  I+A+  +      GK +  ++++  ++IL+ Y  R++ + ++ +  +    
Sbjct: 58  NR---DVLFIDASREFVK----GKNQNKLSEENIQKILENYAERKDVEKYAHLATFDEIK 110

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
                +  P  +    ++  +  +      +K+    Q    ++L+ +
Sbjct: 111 ENDYNLNIPRYVDTFEEEEPIDMVHVGNDIKKIRQEQQVLEKELLEAI 158


>gi|257064716|ref|YP_003144388.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792369|gb|ACV23039.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 650

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 143/441 (32%), Gaps = 59/441 (13%)

Query: 94  TNTRNNLESYIASFSDNA-------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
           +     LE  +   ++         + + E       +  L +   +  +      I  +
Sbjct: 225 SAIGEVLEDLLDGSNNKQTKIRLLKRDVLE----DQKVRALTQEDWIEVLTDILMNIYRY 280

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            D         +    I               TP  +      L       +        
Sbjct: 281 IDADSSEGQDILNLFFITFNKYVGKADKNQAFTPDHITDFMAQLTEVTWKDV-------- 332

Query: 207 RTLYDPTCGTGGFLTDAM-NHVA---------DCGSHHKIPPILVPHGQELEPETHAVCV 256
             + D  CG+G FL  AM   +A         +              G E E + + +  
Sbjct: 333 --VLDECCGSGSFLVQAMVKELADARLGCTEAEFRERADEIKQHHIFGIENEEKAYGLST 390

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             MLI         D + N++ GS   K  F    +    L NPP+  K      + +++
Sbjct: 391 TNMLIHG-------DGNSNVEFGSCFDKRQFIADAKPTVILMNPPYNAKPRTIPASYKRD 443

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPLFNGRAGSGE 374
               E  R G   P      ++F+ +L++  +     G R A++L  ++ +  G   S  
Sbjct: 444 WTASE--RNGKSDPTKG---LVFVKYLSDIAKAEDWDGVRLAVLLPMAAAIGTGTRLSSV 498

Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
            E+   LL ++ +EA+ +LP ++F+   ++     + +  ++               +  
Sbjct: 499 KEM---LLVDNTLEAVFSLPAEIFYPGASVQACCMLFTLNRSHYEADG-CTPKKQTFFGY 554

Query: 434 IRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR--PLRMSFIL 490
            R++G  KR+ +        ++ + +  + ++ ++L      YR   +        S   
Sbjct: 555 YRDDGFVKRKGLGR------VEQFDADGHSEWKKILKKWLDLYRNKTIEAGYSAMQSVTS 608

Query: 491 DKTGLARLEADITWRKLSPLH 511
               LA    D  + KL+   
Sbjct: 609 SNEWLAEAYMDTDYTKLAEND 629


>gi|21221543|ref|NP_627322.1| hypothetical protein SCO3104 [Streptomyces coelicolor A3(2)]
 gi|10241787|emb|CAC09545.1| hypothetical protein SCE41.13c [Streptomyces coelicolor A3(2)]
          Length = 679

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 104/303 (34%), Gaps = 50/303 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE L+ R            +TP  +  L   L             G  RT+ DP CGTG
Sbjct: 168 AYEFLLGRHLDANPRQYT--LTPDPLADLMAELA------------GPARTVLDPACGTG 213

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A              P    +GQE +P   A       +  L      D +  I 
Sbjct: 214 SLLRAAA---------ATTRPGQELYGQESDPALAA-------LTALRLALSTDATVRIA 257

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L  D  TG R    L +PPF ++            +     R+  G P  ++  + 
Sbjct: 258 AGDSLRADARTGLRADAALCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELA 310

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H   ++      GG   +++  +        SG   +R  LL    + A++ALP   
Sbjct: 311 WVQHALARVRD----GGTVVVLMPPAAASR---RSG-RRVRADLLRRGALHAVIALPVGA 362

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
               N+  +LW+L   +    +  V L +        R     R +     R  +LD + 
Sbjct: 363 APPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDAWT 417

Query: 458 SRE 460
           + +
Sbjct: 418 AFD 420


>gi|325919626|ref|ZP_08181635.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
 gi|325549874|gb|EGD20719.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
          Length = 617

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 68/344 (19%)

Query: 131 GLLYKICKNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           G+  +I                   V+   Y   + ++ +   +     +TPR V  L  
Sbjct: 264 GVFKEIISRICENVWPYINVYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHVAELF- 321

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQ 245
                        +      + D   GTGGFL  AM H+       +           G 
Sbjct: 322 ---------SLIANVSPESKVLDICAGTGGFLISAMQHMLKKAVTEEERTDIKKNRLIGI 372

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFG 302
           E  P+  A+  + M++R        D   N+ Q S             + +  + N P+ 
Sbjct: 373 ENNPKMFALAASNMILRG-------DGKANLHQASCFDDAVIKAIQKMKPNVGMLNQPYA 425

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAAIV 359
           +                            SD  +    F+  + + LE    G    AIV
Sbjct: 426 QS--------------------------KSDAELHELYFVKQMLDCLEPGSTG---IAIV 456

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
             SS +         + IR  L+ +  ++A++++P +LF+     T + +   ++   + 
Sbjct: 457 PMSSAI-------KPNPIRDELMAHHTLDAVMSMPQELFYPVGTITCVMVWVAKRPHAKS 509

Query: 420 G-KVQL-INATDLWTSIRNEGK-KRRIINDDQRRQILDIYVSRE 460
           G K        D +   +++G+  ++      R + +++Y +RE
Sbjct: 510 GRKTWFGYWRDDGFIKTKHKGRIDQQGTWPAIRDRWVEMYRNRE 553


>gi|291276745|ref|YP_003516517.1| putative adenine-specific DNA-methyltransferase [Helicobacter
           mustelae 12198]
 gi|290963939|emb|CBG39776.1| putative Site-specific DNA-methyltransferase (Adenine-specific)
           [Helicobacter mustelae 12198]
          Length = 650

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/451 (13%), Positives = 137/451 (30%), Gaps = 78/451 (17%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           LL+      E  R+     Y     +   +      + +    F N   + L  L +   
Sbjct: 179 LLKDASDLHEDLRN-----YGNLRDTEKPIVVSGILLALEEIRFKN---FDLERLNADGQ 230

Query: 97  RNNLESYIASFSDNAK-----------AIFEDFDFSSTIARLEK-AGLLYKI-CKNFSGI 143
           +++      +  DN K            +   F       ++ +    L K   K+++  
Sbjct: 231 KSDGAKIYGAIVDNLKRANVGPDVKKDKLLSQFSIIKDAPKINEVNSTLGKTPLKHYAEF 290

Query: 144 -------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
                   +      + ++   Y   +  +     +     +TP+ +  L   L     D
Sbjct: 291 LYKRIYQNIKYTQTSEDILGRFYGEFMS-YSGGDGQTLGIVLTPKHICELFCDLAKLKPD 349

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253
                       ++DP CGT GFL  AM+++    ++             G E   +  +
Sbjct: 350 DR----------VFDPCCGTAGFLIAAMHNMLLQVTNDTQKQEIKENQLFGIEERADMFS 399

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +    M++R       +    N         DL   K     + NPP+ +  + +    E
Sbjct: 400 IATTNMILRG----DGKSNLDNKDFLKQNPPDLQKDKAATVGMMNPPYSQGSKANPALYE 455

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                                           L      GGR  +++  S +        
Sbjct: 456 IAFSE--------------------------HLCDSILKGGRVIVIVPQSAM--TGKSKE 487

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWT 432
           E  I+  +L+   +E ++ L  + F+       + I       ++    + IN   D + 
Sbjct: 488 EKAIKANILKKHTLEGVITLNKNTFYGIGTNPCIAIFKAGIPHQKDKICKFINFENDGFV 547

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             +++G    I   D++  +L ++   +  +
Sbjct: 548 VQKHKGLVETIHAKDKKAHLLKVWRDEKEAE 578


>gi|326202976|ref|ZP_08192843.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
 gi|325987053|gb|EGD47882.1| N-6 DNA methylase [Clostridium papyrosolvens DSM 2782]
          Length = 737

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/463 (15%), Positives = 141/463 (30%), Gaps = 63/463 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            A  L  +    + + L             +E  +  F          + TPR++V    
Sbjct: 268 NAKELETVVGYLAKVNLT--ATDLDSKGKAFETFMGSF---FRGEFGQYFTPRNIVKFIV 322

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-------------- 234
             L   ++++          + D +CG+GGFL  A++ V +                   
Sbjct: 323 ESLPITNESV----------VLDTSCGSGGFLLYALDKVRNIADQKAEEGYFSKDSKEHW 372

Query: 235 ---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS----KDLF 287
                      +G E+           M+I   +          ++    LS       F
Sbjct: 373 NFWHDFAEKRLYGVEISESIARTAKMNMIIHD-DGHTNVVAFDGLEGIDKLSETTKNPGF 431

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM----------- 336
              RF + ++NPPFG   +  +    ++ + G          K+ +  +           
Sbjct: 432 KKNRFDFIITNPPFGSTIKYSEHRYIEDFELGCKSI-DWIEAKLKNVDLNSPRDNQSSEI 490

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+      L      GG  AIV+    L      S    +R W+ E   I A+V++P  
Sbjct: 491 LFIERCHQYLHD----GGILAIVIPDGIL----TNSSMQYVRDWIEEKYRIIAVVSMPQT 542

Query: 397 LFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            F      + + +  L     ++      +  +    T  + E        + +++ IL 
Sbjct: 543 AFTANGAGVKSSVLFLYKLSEKDTATIRAIKKSLQDKTFDKPEYGAAITALEQEKQTILK 602

Query: 455 ----IYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
                    E    S +   R  G     + R L            + E+  +W+K +  
Sbjct: 603 RGDVTKQEMEEAFVSHIEALRAQGNHTKDIERQLTKGHKEKVKEYEKSESFQSWKKETTE 662

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
             +  +  +K  +   Y     +      I    A+ +   A+
Sbjct: 663 EFNERISNIKENLSDEYTGLVKDKLNNYPIFMAIAEDIGYDAT 705


>gi|297157211|gb|ADI06923.1| N-6 DNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 706

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 94/274 (34%), Gaps = 41/274 (14%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L  R   +       ++TPR +  L   LL        + +     ++ DP CGT     
Sbjct: 165 LAERLLEDTGGT-GTYLTPRPLAALMARLLT-------ESAGAFPASVLDPACGT----- 211

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                     +          HGQ++     A     + +         + + ++  G +
Sbjct: 212 ------GSLLAAAASAGASELHGQDVLVAQAAQAAVRLRL------NAPEAAISVHTGDS 259

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L  D F G      L NPP+G +     D            R+  G+P   +  + ++ H
Sbjct: 260 LRSDAFKGLTADAVLCNPPYGVRDWGHDD-------LAYDQRWAYGVPPKGEPELAWVQH 312

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               L       GRA +++  +        +    IR  L+ +  + A+V+LP       
Sbjct: 313 CLAHLTPR----GRAVLLMPPAV----AERTAGRRIRAQLVRDGALRAVVSLPQGAATPL 364

Query: 402 NIATYLWILSNRKT-EERRGKVQLINATDLWTSI 434
           +I  +LW+L       E  G V L++A      +
Sbjct: 365 HIGLHLWVLERPDPQAEAPGTVLLVDAAAENRDL 398


>gi|288926003|ref|ZP_06419932.1| putative type I restriction-modification system, M subunit
           [Prevotella buccae D17]
 gi|288337223|gb|EFC75580.1| putative type I restriction-modification system, M subunit
           [Prevotella buccae D17]
          Length = 399

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 127/406 (31%), Gaps = 97/406 (23%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V    YE ++    + + + A  F TPR+++     +L           P     + DP
Sbjct: 25  DVKGTAYETIV---SNTLKQEAGQFFTPRNIIKCMVEML----------DPDQNCRVLDP 71

Query: 213 TCGTGGFLTDAMNHVA-----------------------DCGSHHKIPPILVPHGQELEP 249
            CG+GGFL   ++HV                        +     +     +  G + +P
Sbjct: 72  ACGSGGFLVMVLDHVRRKIAKNLYPDLDEVRLEAKYNSPEVDDAVREYAEKMIFGFDFDP 131

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD------------------LFTGK- 290
           +        M++         D   NI   ++L                       +   
Sbjct: 132 DLKKAARMNMVMAG-------DGHSNIYNINSLDYPYGSKPDVPLIAEAVNDSIKHSADK 184

Query: 291 -------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                        +F    +NPPFG K          E       RF       +   +L
Sbjct: 185 DFHFETPASNAQGKFDMIFTNPPFGSKV---------EVDTEISTRFEL---NSTAPEVL 232

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+    N L+     GG+  IVL    L N    S    +R W+L +  + A V LP + 
Sbjct: 233 FIEACYNFLKP----GGKMGIVLPDGILGNPNTES----VRLWILRHFKLLASVDLPVET 284

Query: 398 FFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F     +   L  L  +  EE    ++  +       + N GK RR +   ++       
Sbjct: 285 FLPQVGVQASLLFLQKKTDEEMLIPIEDEDYNVFMAIVENVGKDRRGVPVYEKDDEGSEL 344

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADI 502
           +  E+ K             + +  R  R++  L K   A L+  I
Sbjct: 345 L-FEHTKKWLTYADNGREIVKSRKERVKRLADDLPKVAQAYLQFKI 389


>gi|145641588|ref|ZP_01797165.1| N-6 DNA methylase [Haemophilus influenzae R3021]
 gi|145273635|gb|EDK13504.1| N-6 DNA methylase [Haemophilus influenzae 22.4-21]
          Length = 676

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 112/337 (33%), Gaps = 79/337 (23%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             F  I+     +   +M  +Y   + ++     +     +TP  V  L   +L      
Sbjct: 326 NIFKSIDGFGGHID--MMGELYSEFL-KYALGDGKELGIVLTPPYVTKLMAQILGINSSN 382

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------PILVPHGQ 245
                      + D   G+ GFL  AM  + D                          G 
Sbjct: 383 R----------VMDLATGSAGFLISAMELMIDDAQKQFGKGTTKANELITQIKQNQLLGV 432

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGK 303
           EL  E + +    M++R        D S  I++GS  ++    FT  +    L NPPF  
Sbjct: 433 ELNAEMYTLAATNMILRG-------DGSSKIEKGSAFNRPDSLFTNFKADRILLNPPFSY 485

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                                           M F+ +  +K+E     GG  AI++  S
Sbjct: 486 DENG----------------------------MPFIAYGLDKMEK----GGLGAIIIQDS 513

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
              +G+A S      + +L+   + A + +PTDLF     + T ++I    K  +    V
Sbjct: 514 AG-SGKAVSTN----QKILKKHSLLASIKMPTDLFQPMAGVQTSIYIFEAHKPHDIDNIV 568

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           + I+ +       N+G KR   +  +    ++ Y   
Sbjct: 569 KFIDFS-------NDGYKRTERSLSEIDHPVERYADM 598


>gi|261364423|ref|ZP_05977306.1| N-6 DNA Methylase family protein [Neisseria mucosa ATCC 25996]
 gi|288567330|gb|EFC88890.1| N-6 DNA Methylase family protein [Neisseria mucosa ATCC 25996]
          Length = 720

 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 112/372 (30%), Gaps = 69/372 (18%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASF-SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           N   Y    + + +     E+      + N + +F+         RL+ A +     +  
Sbjct: 235 NGEPYDFQIILTADEGAGSETQQQKNRAQNTQELFKRVTGLYEEGRLKDAEVFKDNIRLT 294

Query: 141 SG---------IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
                       +++            +E  +  F          + TPR +V     +L
Sbjct: 295 PERVRTIVGYLQDVNLSKTDLDSKGRAFETFMDSFFRGS---FGQYFTPRRIVKFIVDVL 351

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------------DCGSHHKIPPI 239
               D            + D +CG+GGFL  A++ V             D   H      
Sbjct: 352 PISHDHF----------VLDTSCGSGGFLLHALDKVRREADEYYSEGSADHFRHWHDFAE 401

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----------FTG 289
              +G E+  +        M+I         D   NI     L  D           F  
Sbjct: 402 KKLYGIEINEQISRAAKMNMIIH-------DDGHTNIITADGLLSDKALQNQSNNLGFKY 454

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-------DGSMLFLMHL 342
             F + ++NPPFG   ++++ A    +  G                       +LF+   
Sbjct: 455 NHFDFIITNPPFGSTVKQNEQAYLATYGFGVSDVSWLDTKNSGVQNRESQKTEILFIEQC 514

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT- 401
            N L+      G  AIV+    L N         +R  +  +  I A+V+LP   F  T 
Sbjct: 515 RNFLKE----NGYLAIVIPDGILTNSSLQY----VRDQIETDFRIIAVVSLPQTAFTATG 566

Query: 402 -NIATYLWILSN 412
             + + +  L  
Sbjct: 567 AGVKSSVLFLRK 578


>gi|159030700|emb|CAO88373.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 81

 Score = 98.9 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          M  F        +FIW  A+ +   FK   +  VILPFT+LRR +C LEPT+  V   Y 
Sbjct: 1  MNNFGEK----VSFIWSIADLIRDTFKRGKYQDVILPFTVLRRFDCVLEPTKEEVLAAYN 56

Query: 61 AFGGSNIDLES-FVKVAGYSFYNT 83
           +     +L+    K +G++FYN 
Sbjct: 57 HYKDKLDNLDPLLCKKSGFAFYNP 80


>gi|282932025|ref|ZP_06337486.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281303852|gb|EFA95993.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 204

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 19/214 (8%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  ++ H+ +KL       G+A  VL++  L        E  IR+ LLE D I+AIVALP
Sbjct: 1   NYAWIEHIISKLNPD----GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALP 54

Query: 395 TDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             +F+ T I   LW +   K      +RRG+   I+A +L   +       R  +D+  +
Sbjct: 55  DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMVDRT---HREFSDEDIK 111

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEADITWRKLSP 509
           +I D Y +       +  D    G+ +I K+    +  ++L       L           
Sbjct: 112 KIADTYHAYRGTNEQKYEDMA--GFCKIAKLDEIAKNDYVLTPGRYVGLVEQ---EDDGE 166

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSN 543
            ++     +   + +Q       +  +K+ +K  
Sbjct: 167 PYEVKMARLTAELKKQFEESDRLQDEIKDVLKEL 200


>gi|283956448|ref|ZP_06373928.1| LOW QUALITY PROTEIN: hypothetical protein C1336_000250331
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792168|gb|EFC30957.1| LOW QUALITY PROTEIN: hypothetical protein C1336_000250331
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 1080

 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/468 (16%), Positives = 151/468 (32%), Gaps = 27/468 (5%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  +S   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+    F    ++  +  R +F        
Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNLAELEAFKDYRNAFRQTSDYKK 734

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L   +     +    L    +L   + + +    Y       +  I  
Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782


>gi|157415312|ref|YP_001482568.1| hypothetical protein C8J_0992 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386276|gb|ABV52591.1| hypothetical protein C8J_0992 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|315932187|gb|EFV11130.1| type I restriction modification DNA specificity domain protein
           [Campylobacter jejuni subsp. jejuni 327]
          Length = 1190

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/468 (16%), Positives = 151/468 (32%), Gaps = 27/468 (5%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 241 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 300

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  +S   +
Sbjct: 301 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 354

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 355 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 413

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 414 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 471

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 472 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 525

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 526 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 585

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+    F    ++  +  R +F        
Sbjct: 586 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNLAELEAFKDYRNAFRQTSDYKK 645

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L   +     +    L    +L   + + +    Y       +  I  
Sbjct: 646 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 693


>gi|167767097|ref|ZP_02439150.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|167711072|gb|EDS21651.1| hypothetical protein CLOSS21_01615 [Clostridium sp. SS2/1]
 gi|291559568|emb|CBL38368.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 573

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 159/451 (35%), Gaps = 78/451 (17%)

Query: 125 ARLEKAGLLYKICK--------NFSGIELHPDTVPDRVMSNIY--EHLIRR---FGSEVS 171
            +L+    L    +         F    +         +++ Y  E+L+           
Sbjct: 52  NKLQNTKELSNYVETELSFEQSLFLKECIGNLWSVAIEIAHDYTVENLLATILWMPISNR 111

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               +  TP  +V+LAT +L   ++            + D  CG G FL +A        
Sbjct: 112 RSEPNSETPESIVNLATRILNINNE-----------KVADFCCGVGNFLINA-------- 152

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
              +       +G E+      +         +  +   D ++ I+QG+    DL   K+
Sbjct: 153 --IEQDKNSKYYGIEINTHYKEIS-------NIRLNLISDYTE-IEQGTVF--DLNMDKK 200

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F     + P+     K    + KE K  E     P + K+     LF+M++   L+    
Sbjct: 201 FDKIFCDYPWNI--LKHNTGINKE-KLQEFESVVPEIKKVVKSDWLFIMNVERHLKS--- 254

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+A ++ ++   +NG       +IR   L+  LIEA+++LP +L+  T I   + +LS
Sbjct: 255 -NGKAVVIATNGTTWNGGID---KKIRERFLKMGLIEAVISLPANLYSTTAIPVSMIVLS 310

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                     V++++A      + + G+++ +++++   QI+ +             +  
Sbjct: 311 KS-----NKMVRMVDARS----MASVGRRQNVLSNETIDQIVHMMTEDTENSKCVTFEEI 361

Query: 472 T----------FGYRRIKVLRPLRMSFILDK-TGLARLEADITWRKLSPLHQSFWLDILK 520
                      F Y   +V   +    ++   T  A+++A I    L  +      D   
Sbjct: 362 EKEDFAINPSRFIYTEAEVENGIPFGNVITNITRGAQVKASI----LDEMVSDNPTDYQY 417

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
            M+  I      +          + +   VK
Sbjct: 418 LMLANIQNGIINDDLPFIKSIDKKLEKYCVK 448


>gi|160935440|ref|ZP_02082822.1| hypothetical protein CLOBOL_00335 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441798|gb|EDP19498.1| hypothetical protein CLOBOL_00335 [Clostridium bolteae ATCC
           BAA-613]
          Length = 389

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 122/370 (32%), Gaps = 71/370 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +M  +Y   + ++     +     +TP  V  + + +L   +++           + D 
Sbjct: 58  DIMGEMYSEFL-KYAFGDGKELGIVLTPPYVTKMMSQILDIDENS----------KVMDL 106

Query: 213 TCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQELEPETHAVCVAGML 260
             G+ GFL  AM  + +                          G EL  E + +    M+
Sbjct: 107 ATGSAGFLISAMKLMIECVEQKYGKNTTKANKKIDEIKQQRLLGVELNAEMYTLASTNMI 166

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +R        D S NI++GS+  +    +     +  L NPPF  K              
Sbjct: 167 LRG-------DGSSNIRKGSSFDEPPELYRNFNANALLLNPPFTFKEN------------ 207

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                   GLP        FL      ++     GG+AAI++  S        S      
Sbjct: 208 --------GLP--------FLKFGLENMK----IGGKAAIIIQDSAGSGRGIISC----- 242

Query: 379 RWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRN 436
           + +L  + + A + +P DLF     + T ++IL +  K  + + +V+ I+  +       
Sbjct: 243 KEILSKNQLVASIKMPVDLFLPMAGVQTSIYILEHTGKEHDYKKQVKFIDFRNDGYKRTK 302

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
            G         + R I+++Y +      S  L           + R            + 
Sbjct: 303 RGIYELDSPSQRYRDIVEVYKNGITANVSSELWDIKNQVVMDVISRNGDDWNFEQHQKID 362

Query: 497 RLEADITWRK 506
            +  +  ++K
Sbjct: 363 LVPTEEDFKK 372


>gi|315638462|ref|ZP_07893639.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21]
 gi|315481453|gb|EFU72080.1| restriction enzyme alpha subunit [Campylobacter upsaliensis JV21]
          Length = 641

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 136/414 (32%), Gaps = 56/414 (13%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            ++ +    G ++I+ E    +    F+  S          +    L   +   ++ AK 
Sbjct: 174 YIKNEVKKRGVNHINDELVKTLKD--FWKISS---EDAIRASIERTLSDLLDGSNNKAKK 228

Query: 114 I--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           I   +    +   I +L+    +  +    + I  + DT  +     +    I       
Sbjct: 229 IELLQKNVLNDQKIKKLKSNDWIEILTTILTDIYKYIDTESEEGQDILNLFFIAFNKYTG 288

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------ 224
                   TP  +      ++               + + D TCG+G FL  AM      
Sbjct: 289 KADKNQAFTPDHITDFMCRVVGVD----------RTKRVLDITCGSGSFLVQAMVKELSD 338

Query: 225 ----NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                   +     +       +G E+E + + +    MLI         D + NI+ GS
Sbjct: 339 CKRGKTEKEAKELMEKVKKDNIYGIEVEEKAYGLATTNMLIHG-------DGNSNIEFGS 391

Query: 281 TLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              K  F         L NPP+  K     +  + +   G     G   P      ++F+
Sbjct: 392 CFEKKEFIKAANPDIILMNPPYNAKPISIPEYYKNKWSKGAKE--GKEDPTKG---LVFI 446

Query: 340 MHLANKLELPPNGG---------GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            +L++ ++                + A++L  S      + S    I+  +LEN+ +EA+
Sbjct: 447 QYLSDIIKEINEEREAKNEVRKEVKLAVLLPMSAAI--GSKSDIKNIKEAMLENNTLEAV 504

Query: 391 VALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
             LP ++F+   +++    + +  K                +   + +G K++ 
Sbjct: 505 FTLPAEVFYPGASVSACCMVFTLGKPHINSDG---TTNETFFGYFKEDGFKKKK 555


>gi|307747955|gb|ADN91225.1| Type I restriction modification enzyme [Campylobacter jejuni subsp.
           jejuni M1]
          Length = 1279

 Score = 98.5 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 75/468 (16%), Positives = 151/468 (32%), Gaps = 27/468 (5%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  +S   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+    F    ++  +  R +F        
Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDFNLAELEAFKDYRNAFRQTSDYKK 734

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L   +     +    L    +L   + + +    Y       +  I  
Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782


>gi|255021987|ref|ZP_05293995.1| Type I restriction-modification system, M subunit, putative
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968623|gb|EET26177.1| Type I restriction-modification system, M subunit, putative
           [Acidithiobacillus caldus ATCC 51756]
          Length = 799

 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 122/480 (25%), Gaps = 137/480 (28%)

Query: 42  RRLECALEPTRSAVREKYLAFGG--SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           RRL+   E  R+  R+++        +I  +      G +F   S+     +    +  +
Sbjct: 137 RRLKEIRESLRAFNRKEFQDLLFVCHSILRDVHKMDPGRAFDTISKILFIKMYVERSGQH 196

Query: 100 ---LESYIAS-------FSDNAKA-IFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHP 147
                 YI                 +FE          L   +  L    + F  I    
Sbjct: 197 GTFTTDYIDRRAAVRLPTDPAVHDGLFEQTKAYYKADDLFAASDKLDISEETFRRIVKQL 256

Query: 148 DTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +        D +    +E  +    +        F TPR VV     LL          +
Sbjct: 257 ERFDLSKTGDDIKGLAFEKFLG---TTFRGELGQFFTPRPVVEFMVDLL----------N 303

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--------------------- 241
           P     + DP  G+GGFL  A  HV                                   
Sbjct: 304 PREGERICDPASGSGGFLIRAFEHVRAQIVADIQRQKDEERARIEALGLPEEEEERQIEE 363

Query: 242 ------------------------------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271
                                          +G + EP         M++         D
Sbjct: 364 AFSRLNRELLPSDDNNKPIDTRVGRLAWQCIYGTDAEPRAARTAKMNMIMHG-------D 416

Query: 272 LSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR------- 323
               I     L   +   G RF   L+NPPFG    +D+     +               
Sbjct: 417 GHGGIHYHDGLLDINGIFGGRFDVVLTNPPFGSNVGRDQKVGGSDETRVPKDEAYLARCR 476

Query: 324 ----------------------------FGPGLPKISD-GSMLFLMHLANKLELPPNGGG 354
                                       F  G  K +    ++F+    N L+     GG
Sbjct: 477 EGGYGPAWEESHQSLLAAAAARKPILDLFEIGKGKKNRPTELIFVERCLNLLKP----GG 532

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
           R  IVL    L N         +RRW      + A+V+LP   F      +   L  L  
Sbjct: 533 RMGIVLPDGNLNNPSLAW----LRRWAEGKAKLLAVVSLPEATFRSSNATVKASLVFLRK 588


>gi|301513071|ref|ZP_07238308.1| putative restriction-modification protein [Acinetobacter baumannii
           AB058]
          Length = 427

 Score = 98.5 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 27/181 (14%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P    
Sbjct: 257 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 305

Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            +YDP CGTGGFLT+A +H+ D        S           G+E+      +    M++
Sbjct: 306 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREITSNA-KLAKMNMIL 364

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D    I Q  TL   + +   +   ++N PF +K         K  KN   
Sbjct: 365 HG-------DGHSGICQIDTLQNPIESE--YDVVITNMPFSQKTSYSHLYENKLAKNDGD 415

Query: 322 G 322
           G
Sbjct: 416 G 416


>gi|325577622|ref|ZP_08147897.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160367|gb|EGC72493.1| hypothetical protein HMPREF9417_0638 [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 615

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 128/385 (33%), Gaps = 54/385 (14%)

Query: 98  NNLESYIASFSDNA--KAIFEDFDFSSTIARLEKAGLLYKI-CKNFSGI------ELHPD 148
           N + + I     N   K + +         ++  +  +  +    F  I      ++ P 
Sbjct: 212 NQIRTGIEGILTNLLNKDLNKAEKLVILKNKVIDSQDIRDLKIDEFKNILRTIETKILPY 271

Query: 149 TVPDRVMS-NIYEHLIRRFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                 M  ++       F   V +       TP  +VH    ++    +++        
Sbjct: 272 INDKNTMGQDLLNLFFTTFNKYVGKSDKNQAFTPDHIVHFMCKVVGVNRNSV-------- 323

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             + DP CG+G FL  A+    D  +     +       +G E E     +    MLI  
Sbjct: 324 --VLDPCCGSGAFLVRALTEAMDDCNTESEREKIKSSQIYGIEYEETAFGLATTNMLIHG 381

Query: 264 LESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNGEL 321
                  D + NI+QG+   +    + K  +  L NPP+  + +  D + VE   +  + 
Sbjct: 382 -------DGNSNIKQGNCFLELKELSTKGINVVLMNPPYNAQRKHCDPEYVESWSEKIKE 434

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                  P           H   K+      G  A ++     +    A S     ++ +
Sbjct: 435 D------PTKG-------FHFVYKVASYIRTGKLAVLLPMQCAI---GASSDIQTYKKKM 478

Query: 382 LENDLIEAIVALPTDLFF-RTNIATYLWILS-NRKTEERRGKVQL-INATDLWTSIRNEG 438
           L+   ++A+ + P+D+F    +  T   I     K +  +          D +   +N G
Sbjct: 479 LDEHTLDAVFSFPSDIFHPGASAVTCCMIFELGTKHKNSKKDTFFGYFKDDGFEKRKNLG 538

Query: 439 K--KRRIINDDQRRQILDIYVSREN 461
           +  K       +  + LD+Y  R+ 
Sbjct: 539 RMEKENKAWQRRESKWLDLYFKRKE 563


>gi|327404935|ref|YP_004345773.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327320443|gb|AEA44935.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 671

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 124/410 (30%), Gaps = 106/410 (25%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-FSGIELHPDTVPD--- 152
             N E    + +   K +F++       + +        +     + I            
Sbjct: 243 EQNTEEGRKAVAKRIKGLFDELKNDQVFSEVFDGNESIALTDKGLAFIAGELAKYSFLDA 302

Query: 153 --RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V    YE ++    + + + A  F TPR++V     +L           P     + 
Sbjct: 303 SIDVKGMAYETIV---SNTLKQEAGQFFTPRNIVKAMVEML----------DPTETDRVL 349

Query: 211 DPTCGTGGFLTDAMNHVA-----------------------DCGSHHKIPPILVPHGQEL 247
           DP CG+GGFL   ++HV                        +     +        G + 
Sbjct: 350 DPACGSGGFLVMVLDHVRKKITEQMFPDLDGPLLAEKYNTYEVNEKVREYAENNIFGFDF 409

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------------------ 289
           +P+        M++         D   NI   ++L+   +                    
Sbjct: 410 DPDLKKAARMNMVMAG-------DGHANIFHVNSLAYPNWEHPAEIEKINMSINNSLRNM 462

Query: 290 -----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SML 337
                       +F    +NPPFG K + +++   +   +             SD   +L
Sbjct: 463 KDDLSYGSDARGKFDVIFTNPPFGAKVKVEQEIASRYFLSKY-----------SDAPEVL 511

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+    + L+     GG+ AIVL    L N         +R W+LE   I A + L  + 
Sbjct: 512 FIEACYDFLKE----GGKMAIVLPDGILGNPNTIH----VREWILEKFKILASIDLAVEA 563

Query: 398 FFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR----NEGKKRR 442
           F     +   L  L  +   ER      ++  D +          GK RR
Sbjct: 564 FLPQVGVQASLLFLQKKSELERN---LALDGDDDYNVFMAIAEKLGKDRR 610


>gi|256026503|ref|ZP_05440337.1| type I restriction modification system M subunit (site-specific
           DNA-methyltransferase subunit) [Fusobacterium sp. D11]
          Length = 296

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 102/274 (37%), Gaps = 34/274 (12%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS--TN 95
              ++RL+   +  +   +EK LA    NID +            ++   L         
Sbjct: 35  LIFMKRLD---QEEQRKEKEKKLASIFGNIDEKFIFDEKHQDIRWSNLIQLGDPKQLYDK 91

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RV 154
            RN    +I +  D+ +++F  +   + I ++    +L         I  +P  V D   
Sbjct: 92  IRNEAFEFIKNLDDDKESVFSQY-MQNAIFKVPTPAVLQNTMDTIEEIFNNPQMVEDKDT 150

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
             ++YE+L+ +  +        F TP+ ++++   L+           P +   + DP C
Sbjct: 151 KGDLYEYLLSKLSTSGK--NGQFRTPKHIINMMVELM----------KPTVEDKIIDPAC 198

Query: 215 GTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GT GFL  ++ ++               K     + HG + +     +    +L+  ++ 
Sbjct: 199 GTSGFLVSSIEYIKRNFKDILATSPEIYKYFSTAMIHGNDTDATMLGISAMNLLLHDMK- 257

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
                 +  +++  +LS D      +   L+NPP
Sbjct: 258 ------TPKLKRIDSLSTDYSEENDYSLVLANPP 285


>gi|291461157|ref|ZP_06027271.2| restriction enzyme BgcI subunit alpha [Fusobacterium periodonticum
           ATCC 33693]
 gi|291378622|gb|EFE86140.1| restriction enzyme BgcI subunit alpha [Fusobacterium periodonticum
           ATCC 33693]
          Length = 370

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 108/325 (33%), Gaps = 62/325 (19%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +   +  +   Y   +   G +  +     +TP+ +  L   LL                
Sbjct: 12  NNSAEDYLGRFYGEFMSYTGGD-GQNLGIVLTPKHITELFCDLL----------DLKTTD 60

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            + DP CGT GFL  AM+++    +     K        G E +     +    M++R  
Sbjct: 61  KILDPCCGTAGFLIAAMHNMIKKANDETEIKEIRKNQLFGIEEKSYMFTIATTNMILRG- 119

Query: 265 ESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                 D   N++    L ++      K     + NPP+    + +    E         
Sbjct: 120 ------DGKSNLENKDFLKENPAQLQLKACTVGMMNPPYSMGSKSNSSLYEINF------ 167

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                                N L       GR A+++  S  F G+    E +I+  +L
Sbjct: 168 --------------------INHLLNSIVEDGRVAVIVPQST-FTGKTKE-EQKIKEEIL 205

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ-LINATDLWTSIRNEGKKR 441
           +N  +E ++ L  + F+R      + I      +  + K+   IN    + +      K 
Sbjct: 206 KNHTLEGVITLNKNTFYRVGTNPCIAIF-KAHNKHPKNKICKFIN----FENDGYNISKH 260

Query: 442 RIIND-----DQRRQILDIYVSREN 461
             + D     D+++ +LD++  R  
Sbjct: 261 IGLIDDGSHRDKKQHLLDVWFERTE 285


>gi|327398989|ref|YP_004339858.1| N-6 DNA methylase [Hippea maritima DSM 10411]
 gi|327181618|gb|AEA33799.1| N-6 DNA methylase [Hippea maritima DSM 10411]
          Length = 714

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/465 (15%), Positives = 152/465 (32%), Gaps = 82/465 (17%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASFSDNAK 112
            +  + LA    +             FY T++            +NL    I  F    +
Sbjct: 270 ELLIQILALKIFDEKRNEKNNREKLKFYITNK--------EANYSNLNDEKIEPFLKRMQ 321

Query: 113 AIFEDFD------FSSTIARLEKA---GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
            +FED               L       +L +  K F                ++Y+ + 
Sbjct: 322 KLFEDAQSTYYTILKEQKINLRNNAHVKILVETVKQFQDFSFVKSHKT-----DLYQLIF 376

Query: 164 RRFGSE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            RF S    E    F+TP  ++     ++          +P    T+ DPT G   FL+ 
Sbjct: 377 YRFASAFSKEQKGQFITPLPLIDFLVEIV----------NPRNGETVIDPTAGVADFLSV 426

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGS 280
           +        + +        +G + + +   +    ML+    +     +     I    
Sbjct: 427 SY------VNSNSKLDDNNIYGVDNDEQMVMLAQLNMLLNGDGNAKLYYIPDKGSITHKI 480

Query: 281 TL-------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           ++                    +D     +F   L+NPPFG+  + +    E++      
Sbjct: 481 SIKNEPVELIPDLHSKGNWDNWRDDTKLLKFDVVLTNPPFGEDRKWEPKTTEEKKLAELY 540

Query: 322 GRFGPGLPKISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
             +   + +  +     ++FL +    L+      GR  IVLS+S      +     + R
Sbjct: 541 ELWH--IARAGNWIDLGLVFLENAYRILKE----NGRLGIVLSNSI----ASIDRWEKAR 590

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG------KVQLINATDLWT 432
           +WL++   I A+  LP ++F  T + T L +      +E +       +V + +   +  
Sbjct: 591 KWLIDKMRIVALFDLPANVFADTGVNTTLIVAYKPNPKELKRLKEQNYEVFVKDIQKVGY 650

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
            ++ + + +      +  +  + +   ++ +   +LD       +
Sbjct: 651 EVKTKKRVKYFEPIYKIDK--ETFEVVQDEEGRPVLDEEFTQTIK 693


>gi|300790744|ref|YP_003771035.1| type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
 gi|299800258|gb|ADJ50633.1| putative type I restriction system adenine methylase [Amycolatopsis
           mediterranei U32]
          Length = 564

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 90/273 (32%), Gaps = 59/273 (21%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E + RR+    S       TP  +  L   L             G + T+ DP CG G
Sbjct: 129 AFELVCRRYFEAHSRRLSA--TPEPIAELMARLA------------GPVSTILDPACGFG 174

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                +                    GQ+ +P T ++    + +R LE +          
Sbjct: 175 ALALASG--------------AKTVLGQDSDPMTASIAALRLRLRGLEVEVHAV------ 214

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
               L +D F G+     L +PPF ++     + V          R+  GLP   +  + 
Sbjct: 215 --DALREDAFAGRTAEAVLCDPPFNERAWGHDELVG-------DARWEYGLPPRGEPELA 265

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H    +E     GG   I++  +        SG   IR  LL    + A+V L    
Sbjct: 266 WVQHCLAHVEP----GGTVVILMPGAA---AGRRSG-KRIRGNLLRAGAVRAVVTL---- 313

Query: 398 FFRTNIATYLWILSNRKT-EERRGKVQLINATD 429
              T     LW+L      E     V L  A D
Sbjct: 314 ---TPTGPDLWLLRRPAPGERAPSTVLLGEAGD 343


>gi|110004972|emb|CAK99303.1| hypothetical n-6 adenine-specific dna methyltransferase protein
           [Spiroplasma citri]
          Length = 415

 Score = 98.1 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 131/399 (32%), Gaps = 73/399 (18%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLESYIAS 106
           L  TR  V  +        +    F K+    F    S   L    + N  +  +  +  
Sbjct: 29  LGATRDEVLAQ-------QLINVIFCKIYDERFTKPESIIELRAGINENENDVKKRILNI 81

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           F    +   E+ D S  I+ L+   ++Y + +               ++++ +E  I   
Sbjct: 82  FEKVKRKYKENIDSSDNIS-LDAKSMVYIVGEL---QNWCLIEAERDIIADAFEIFIGH- 136

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              +  G   F TPR+VV +   +L   D+ L            DP+CG+ GFL +++ +
Sbjct: 137 --ALKGGQGQFFTPRNVVKMMVEILDPNDEDLI----------IDPSCGSDGFLIESLRY 184

Query: 227 VADCGSHHKIPPILV---------------PHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           + +                               + +     V  A M I         D
Sbjct: 185 IWNKLDIEGKRLDWNAENLKEEKMEVALNKIREIDKDYFLTRVAKAYMAILG-------D 237

Query: 272 LSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWE-------KDKDAVEKE 315
               I    TL                 +F   L+NPPFG K         K  +   K 
Sbjct: 238 GKSGIFCEDTLENINTWDYKTRIKIDKGKFSILLTNPPFGSKIPVRGEEKLKQYELAYKW 297

Query: 316 HKNGELGRFGPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            K+ + G +  G L +     +LF+      L+     GG  AIVL    +F        
Sbjct: 298 KKDKKSGIWSKGKLNEKEAPQVLFIERNIQLLKE----GGNMAIVLPDG-IFGNDT---F 349

Query: 375 SEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           + IR W+     I  I+ LP + F   T+  T + I   
Sbjct: 350 AFIRNWIKNQGRILGIIDLPIETFQPNTSTKTSVLIFQK 388


>gi|282933444|ref|ZP_06338821.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
 gi|281302427|gb|EFA94652.1| putatIve type i restriction enzyme hindviip m protein
           [Lactobacillus jensenii 208-1]
          Length = 173

 Score = 98.1 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 16/172 (9%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  ++ H+ +KL       G+A  VL++  L        E  IR+ LLE D I+AIVALP
Sbjct: 1   NYAWIEHIISKLNPD----GKAGFVLANGALSTTLKE--ELAIRKNLLEADKIDAIVALP 54

Query: 395 TDLFFRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             +F+ T I   LW +   K      +RRG+   I+A +L   +       R  +++  +
Sbjct: 55  DKMFYSTGIPVSLWFIDMNKNSEDERDRRGETLFIDARELGEMVDRT---HREFSNEDIK 111

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRI-KVLRPLRMSFILDKTGLARLEAD 501
           +I D Y +       +  D    G+ +I K+    +  ++L       L   
Sbjct: 112 KIADTYHAYRGTNKQKYEDVA--GFCKIAKLDEIAKNDYVLTPGRYVGLAEQ 161


>gi|307273977|ref|ZP_07555187.1| hypothetical protein HMPREF9514_02719 [Enterococcus faecalis
           TX0855]
 gi|306509285|gb|EFM78345.1| hypothetical protein HMPREF9514_02719 [Enterococcus faecalis
           TX0855]
          Length = 199

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 62/197 (31%), Gaps = 29/197 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN---NLESYIASFSDN 110
                           +    +     Y  +   L  + +   +     L     +F   
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAIAPEYLFNVLADQAKQATFQLNDLNKAFVQL 122

Query: 111 A------KAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           A        +F+D D  S        ++   + ++ K  + +E+        V+ + YE 
Sbjct: 123 ASTYNQFNGLFDDVDLQSKKLGTDEQQRNVTITEVIKKLNDVEVL--GHDGDVIGDAYEF 180

Query: 162 LIRRFGSEVSEGAEDFM 178
           LI +F SE  + A +F 
Sbjct: 181 LISQFASEAGKKAGEFY 197


>gi|166366727|ref|YP_001659000.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
 gi|166089100|dbj|BAG03808.1| type I restriction enzyme EcoEI M protein [Microcystis aeruginosa
           NIES-843]
          Length = 588

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 110/336 (32%), Gaps = 72/336 (21%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ ++YE  +      +      ++TPR +V     +              +   + D 
Sbjct: 287 DVVGSVYEAFL---TGTLRGDLGQYLTPRQLVEFMVEIADI----------KIGEKVLDL 333

Query: 213 TCGTGGFLTDA----MNHVADCGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLI 261
           +CG+GGFL  A       +    S                  G E+ P    +C   M++
Sbjct: 334 SCGSGGFLIRAFINVRKKIRFLDSSQDEKDHLVSNLVTNNLWGIEINPRLATLCRINMIL 393

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG----------------KRFHYCLSNPPFGKKW 305
                    D  ++I  G ++ +D+F                    F   L NPPF   +
Sbjct: 394 HG-------DGYEHIYTGDSIREDVFENTDGRRTDFLNIEQNNAAMFDVILINPPFNIPY 446

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           E                R+  G  K + G   L L      L+      GR  ++L    
Sbjct: 447 EDSATL----------NRYYLGRGKAAQGSDYLVLERAIRLLKPET---GRLLVILPHGV 493

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEERRGK 421
                +G  E+E+R ++     I   ++LP   F     +N  T +  L  +KT     K
Sbjct: 494 ----ASGVSETEVRNFVKSRTHIHGCISLPVGSFKPFGGSNARTCVLYL--KKTTGDNKK 547

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
             L  A  +   I ++  +   +ND     I + Y 
Sbjct: 548 RFLAQAEHVGYDITSKYYRETDLND--LPVIAEAYH 581


>gi|237755533|ref|ZP_04584152.1| putative type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692296|gb|EEP61285.1| putative type I restriction-modification system, M subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 707

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 145/423 (34%), Gaps = 64/423 (15%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            +  + LA    +       K     FY + +    +  +  +       I +  + AK 
Sbjct: 264 EILIQMLALKIFDEKANKIDKNRTLKFYISQDERNYSSLADPSIQQFIRRIENLYNEAKG 323

Query: 114 IFEDFDFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
            +      S I   + + +  +  I +NF           +   ++IY+ +  RF +E +
Sbjct: 324 SYRTILGQSIINFKDSSHISAIVSIVENFQDYSFV-----NSYKTDIYQLVFYRFANEFA 378

Query: 172 EG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F+TP  ++     ++          +P    T+ DP  G   FL+ +       
Sbjct: 379 KERKGQFITPIWLIDFLVKIV----------NPRGNETVIDPCVGIADFLSLSF------ 422

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--------LESDPRRDLSKNI------ 276
            + +        +G + + +   +    ML+          +      D   +I      
Sbjct: 423 VNSNPKLKDDNLYGIDNDRQMIMLAQLNMLLNGDGNAKLYYIPDKGSIDHKIDIDGKVVK 482

Query: 277 ------QQGS-TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                 + G+     D    K+F   L+NPPFG+         E +        +   L 
Sbjct: 483 LNPNYHKNGNWDNWPDTTELKKFDVVLTNPPFGEDRAYKAFTTEDKEIAECYELWH--LN 540

Query: 330 KISDGS---MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           K  +     ++FL +    L+      GR  I+LS+S      +     + RRW +EN  
Sbjct: 541 KQGNWIDLGLIFLENAVRLLKE----NGRMGIILSNSI----ASIDRWKKARRWFIENMR 592

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRG------KVQLINATDLWTSIRNEGKK 440
           I A+  LP ++F  T + T + +    K EE         +V + +   +   +R   + 
Sbjct: 593 IVALFDLPPNIFADTGVNTTIIVAYKPKKEELEKLKNQNYEVFIKDIKRVGYEVRTSKRV 652

Query: 441 RRI 443
           +  
Sbjct: 653 KYY 655


>gi|1209820|gb|AAC44403.1| XmnI methyltransferase [Xanthomonas axonopodis pv. manihotis]
          Length = 620

 Score = 97.7 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 101/292 (34%), Gaps = 48/292 (16%)

Query: 163 IRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           +R F   EV +G   F+TP +VV    + +           P       DP CG+G FL 
Sbjct: 108 LREFLTPEVRKGLGIFLTPDEVVREVVSFV----------DPPSSAKCLDPACGSGTFLI 157

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           + +       +       +   G +  P         +LI  L       L+ N     +
Sbjct: 158 EVIKKWRKENA-----QKISVWGADKNPRM-------LLIGELNLGHFPGLTFNRALMDS 205

Query: 282 LSKDLFTGKR-------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKIS- 332
           L +      +       F + L+NPPFG   E    A       G    F   G P+   
Sbjct: 206 LVEPGKRHSKPWCRYGYFDFILTNPPFGVTVEASGAAYS-----GYDIAFTANGEPRARQ 260

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+      L+     GG  A+VL  S L N  +       R  L +   ++A++ 
Sbjct: 261 SSEWLFVEQSLRWLKP----GGTLAVVLPRSVLTNPSSAYE----RSLLAKLGYLKAVIQ 312

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRG---KVQLINATDLWTSIRNEGKKR 441
           LP + F  T   T   +    K    +    KV ++ AT       + G+ R
Sbjct: 313 LPPETFLVTGAQTNTVVAFIEKYASDKDREKKVGVVQATLSNVGYDSTGRPR 364


>gi|257458623|ref|ZP_05623758.1| type I restriction-modification system, M subunit [Treponema
           vincentii ATCC 35580]
 gi|257444057|gb|EEV19165.1| type I restriction-modification system, M subunit [Treponema
           vincentii ATCC 35580]
          Length = 202

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 61/180 (33%), Gaps = 16/180 (8%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              IW  A  LWG     ++ KVI+    LR +  A E   + +        G   + + 
Sbjct: 12  EKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISSAFEKRYAELVS-----DGEGFEDDR 66

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTI 124
                   F+   +   + + +      +   I +        +   K +      S  +
Sbjct: 67  DAYTEKNIFFVPEKARWAVIAAAAHTPEIGIVIDTAMREIETQNKRLKNVLPQNYASPDL 126

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            +     +L  +   F+ +++        ++   YE+ I +F +   +   +F TP  +V
Sbjct: 127 DK----RVLGDVVDLFTNMDMDGTEHNKDLLGRTYEYCIAQFAAYEGKKGGEFYTPASIV 182


>gi|331669722|ref|ZP_08370568.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
 gi|331063390|gb|EGI35303.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
          Length = 342

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 95/299 (31%), Gaps = 62/299 (20%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY---SLSTLGSTNTRNNLESYIAS 106
            T+    EK     G +       +   + F + S      +  +       +      +
Sbjct: 42  DTQEQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQA 101

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            +     +  +F   + +  + K  LL K  +    + L           ++YE+L+ + 
Sbjct: 102 DASKV-TLLGNFMKDARLE-IVKPSLLTKAVEVIKNLPLD----RGDTKGDLYEYLLSKL 155

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +        F TPR ++     ++        + +P    T+ DP CGTGGFL  +  +
Sbjct: 156 TTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDPACGTGGFLATSYEY 205

Query: 227 VADCGSH------------------------------HKIPPILVPHGQELEPETHAVCV 256
           + +  S                                      + HG + +     +  
Sbjct: 206 LLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAA 265

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDK 309
             +++  +E       + +I    T+S+         +   F+  L+NPPF    +++ 
Sbjct: 266 MNLIMHGVE-------APDIHYQDTMSQSFSKNFPQASKNAFNLILANPPFTGSLDEED 317


>gi|256027310|ref|ZP_05441144.1| type I restriction-modification system, M subunit [Fusobacterium
           sp. D11]
          Length = 834

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 149/431 (34%), Gaps = 61/431 (14%)

Query: 38  FTLLRRLECALEPTRSAVRE-KYLAFGGSNIDLESFVKVAGYSFYNTSE---YSLSTLGS 93
           F  L+     +E ++  + E ++ +   S   L+   K+ G +     +     +  +  
Sbjct: 227 FIGLKM---VMEKSKKELNEKEWDSIKDSKDILDILEKIIGDTADKKIKKKYQDIFKIVD 283

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGLLYKICKNFSGIELHPD 148
            + +   + Y       A+   E+ +           + +    L KI K    I    D
Sbjct: 284 KDDKVKFDFYKQLKDIRARENTENNESIKEEIDKNSNKKKNESTLMKIHKAIEEINSTND 343

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +P  +   +YE L  +   +      +F T R ++     +     D          + 
Sbjct: 344 -LPIDLFGEVYECLASK---KTKSMLGEFFTRRHIIKAIVRMFFSSKDIKDIIK--YKKI 397

Query: 209 LYDPTCGTGGFLTDAMNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGML 260
           + DP CGTGGFLT++  ++ +                   +  G ++   +       M+
Sbjct: 398 IVDPACGTGGFLTESFKYIKNYCEKEKKLSKKEISELANKIIVGYDINANSIGRTRINMI 457

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFT-------GKRFHYCLSNPPFGKKWEKDKDAVE 313
           +         D   +I + +TL  + +         K   Y L+N P+G+      +   
Sbjct: 458 LTG-------DGFSDIDRYNTLQANWYNQKENSGIKKDVDYVLTNVPYGQGDYAVSNKES 510

Query: 314 KEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            E  KN +  R            + F++ +   L+     GGRA+I+L    L       
Sbjct: 511 DEFIKNNKNKRL----------ELNFVLKIIEMLKE----GGRASIILPEGLL----EAP 552

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR-KTEERRGKVQLINATDL 430
             S  R +LL    IE I++LP   F   T   TY+  L  R K  E   KV   N    
Sbjct: 553 TLSNFRDYLLRQCKIETIISLPKFAFAPYTKWKTYVIFLEKREKILETIEKVINKNEKIW 612

Query: 431 WTSIRNEGKKR 441
              + N+G   
Sbjct: 613 CYIVDNDGYAN 623


>gi|237750950|ref|ZP_04581430.1| N-6 DNA methylase [Helicobacter bilis ATCC 43879]
 gi|229373395|gb|EEO23786.1| N-6 DNA methylase [Helicobacter bilis ATCC 43879]
          Length = 584

 Score = 97.7 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 115/362 (31%), Gaps = 66/362 (18%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           Y    Y        + +  LE  I    +  K    +  F + +  +  A  +  + +N 
Sbjct: 222 YKIEYYEFQKNRDED-KFALEKRIKGLYEKYKKEDSNV-FDNAL--ILDADEIKFLVENL 277

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            GI      +   +   I+++ ++ F       A  F TP +VV           + L  
Sbjct: 278 EGI--GLSKIELDIKGEIFQNFLKDF---FKGKAGQFFTPFNVVRFVIGCFDITQNDL-- 330

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQE 246
                   + DP+CG+GGFL   + ++ +   +H                      +G E
Sbjct: 331 --------VLDPSCGSGGFLLRTLLYMREKCENHYKDKNDEVQKFLCWHSFAEKNLYGIE 382

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--------SKDLFTGKRFHYCLSN 298
           +           M+I         D   N+     L          + F    F++  +N
Sbjct: 383 INGGISQAAKMQMIIH-------DDGHTNVITADGLDSFENFIRKNNKFQKNTFNFIFTN 435

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSM-------LFLMHLANKLELPP 350
           PPFG      K   E          F   +  K S   +       LFL      L+   
Sbjct: 436 PPFGSSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSGQKSEILFLERYFEFLKE-- 493

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408
             GG  A VL    L N         +R +LLE   + A  +LP   F  +   + + + 
Sbjct: 494 --GGIVACVLPDGILTNSSLQ----NVRDYLLERFYLLASFSLPQHTFSNYGAGVKSSIL 547

Query: 409 IL 410
           +L
Sbjct: 548 VL 549


>gi|308185241|ref|YP_003929374.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori SJM180]
 gi|308061161|gb|ADO03057.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori SJM180]
          Length = 679

 Score = 97.4 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/405 (17%), Positives = 128/405 (31%), Gaps = 88/405 (21%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
           SF   S+        T+    +   +   S   K IF                 LY+   
Sbjct: 283 SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQIF---------------TFLYEFVH 326

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
               I    +T    +M  +Y   + ++     +     +TP  V  + + LL     + 
Sbjct: 327 K--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLGVNAKSF 383

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQE 246
                     + D   G+ GFL  +M  + +                 K        G E
Sbjct: 384 ----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTIANEKIKNMKTTQLLGVE 433

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKK 304
           L  E  ++    M++R        D S  I +G+T   +   +   + +  L NPPF  +
Sbjct: 434 LNAEMFSLATTNMILRG-------DGSSLIIKGNTFETNKKIYEDFKPNILLLNPPFSHE 486

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                                          M F+      ++     GG  AI++  S 
Sbjct: 487 ENG----------------------------MPFIKFGLEHMQK----GGLGAIIIQDSA 514

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQ 423
              G   + +S +   +L+   + A V +PTDLF     + T ++I    +  +    V+
Sbjct: 515 ---GSGQALKSNV--EILKKHSLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVK 569

Query: 424 LINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            I+  +        G         +  +I+ IY +  N K S+ L
Sbjct: 570 FIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSKEL 614


>gi|282909128|ref|ZP_06316946.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282327392|gb|EFB57687.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 200

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/192 (19%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE-----KYL 60
              A L   +W  A DL G+   ++F   IL       L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYCFLSEKAEQEYADALSGEDITYQE 68

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSE---------------YSLSTLGSTNTRNNLESYIA 105
           A+       +  V++     Y                   + +  L +T  R    S + 
Sbjct: 69  AWADEEYREDLKVELIDQVGYFIEPQDLFSAMIHEIETQDFDIEHL-ATAIRKVETSTLG 127

Query: 106 SFSDN-AKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
             S+N    +F D D SST       E+  L+ K+  N   +      +   ++ + YE 
Sbjct: 128 EESENDFIGLFSDMDLSSTRLGNNVKERTALISKVMVNLDDLPFVHSDMEIDMLGDAYEF 187

Query: 162 LIRRFGSEVSEG 173
           LI RF +   + 
Sbjct: 188 LIGRFAATAGKK 199


>gi|159027726|emb|CAO89595.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1193

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 101/317 (31%), Gaps = 62/317 (19%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L  +      I L             +E  +  F          + TPR +V     +
Sbjct: 286 EKLRTVVGYLESINLG--ETDLDSKGRAFETFMGSF---FRGDFGQYFTPRQIVKFIVDV 340

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA------------------DCGS 232
           L    ++L          + D +CG+GGFL  A+  V                       
Sbjct: 341 LPIQHNSL----------VLDTSCGSGGFLLHALEKVRTEADEYYPNYQTNPKEYNQHYQ 390

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGSTLSKDL 286
           H          G E+  +   V    M+I        + +D  RD    I++        
Sbjct: 391 HWHNFAQSNLFGIEINEQIARVAKMNMIIHDDGHTNVIAADGLRDSEDLIKRT---ENKG 447

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD--------GSMLF 338
           FT  RF + ++NPPFG   ++ + A   ++      +    L   S           +LF
Sbjct: 448 FTYNRFDFIITNPPFGSVIKQTEQAYISQYS--FAMKAVDWLNPKSRTTERDSQSTEVLF 505

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           L      L+     GG  A+V+    L N         +R  + E   I A+V++P   F
Sbjct: 506 LEQCHRFLKE----GGYLAMVVPDGILTNSSLQY----VREGIEEKYRIVAVVSMPQTAF 557

Query: 399 FRT--NIATYLWILSNR 413
             T   + + +  L   
Sbjct: 558 SATGAGVKSSVLFLKKH 574


>gi|256962630|ref|ZP_05566801.1| RM-CspCI [Enterococcus faecalis HIP11704]
 gi|256953126|gb|EEU69758.1| RM-CspCI [Enterococcus faecalis HIP11704]
          Length = 608

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 126/367 (34%), Gaps = 62/367 (16%)

Query: 108 SDNAKAI-FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS-NIYEHLIRR 165
           S + + +  E+F             +LY+I          P       M  ++       
Sbjct: 235 SQDVRDLKIEEFQ-----------KILYEIKDKI-----IPYINDKSTMGQDLLNLFFTT 278

Query: 166 FGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F   V +       TP  +VH    ++    +++          + DPTCG+G FL  AM
Sbjct: 279 FNKYVGKADKNQAFTPDHIVHFMCKVVGINRNSV----------VLDPTCGSGAFLVRAM 328

Query: 225 NHVA---DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  D     +        G E E + + +    MLI         D + NI +GS 
Sbjct: 329 TEAMADCDTDEERERIKKEKIFGIEFEEKAYGLATTNMLIHG-------DGNSNILKGSC 381

Query: 282 --LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             L  D+    + +  L NPP+  + +       K  K+          P        F+
Sbjct: 382 FDLLDDITDNNKINRILMNPPYNAQRKHCNPEYVKTWKSNTKQ-----DPSKG---FHFV 433

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                K++      G+ A++L           S     ++ +LE   ++A+ +LP D+F 
Sbjct: 434 YETVKKVKE-----GKLAVLLPMQCAI--GNSSEVKYFKKKMLEEHSLDAVFSLPIDMFH 486

Query: 400 -RTNIATYLWILS---NRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQIL 453
              + +    + +      +   +         D +   +N G+  ++  +  +   Q L
Sbjct: 487 PGASASACCMVFNLGIRHGSAPLKETFFGYFKDDGFEKRKNIGRMERKNGLWQNIEEQWL 546

Query: 454 DIYVSRE 460
           ++Y +RE
Sbjct: 547 NLYFNRE 553


>gi|289771161|ref|ZP_06530539.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces lividans TK24]
 gi|289701360|gb|EFD68789.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces lividans TK24]
          Length = 735

 Score = 97.4 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 103/303 (33%), Gaps = 50/303 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE L+ R            +TP  +  L   L             G  RT+ DP CGTG
Sbjct: 224 AYEFLLGRHLDANPRQYT--LTPDPLADLMAELA------------GPARTVLDPACGTG 269

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A              P     GQE +P   A       +  L      D +  I 
Sbjct: 270 SLLRAAA---------ATTRPGQELCGQESDPALAA-------LTALRLALSTDATVRIA 313

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L  D  TG R    L +PPF ++            +     R+  G P  ++  + 
Sbjct: 314 AGDSLRADARTGLRADAALCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELA 366

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H   ++      GG   +++  +        SG   +R  LL    + A++ALP   
Sbjct: 367 WVQHALARVRD----GGTVVVLMPPAAASR---RSG-RRVRADLLRRGALHAVIALPVGA 418

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
               N+  +LW+L   +    +  V L +        R     R +     R  +LD + 
Sbjct: 419 APPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDAWT 473

Query: 458 SRE 460
           + +
Sbjct: 474 AFD 476


>gi|256787267|ref|ZP_05525698.1| hypothetical protein SlivT_22487 [Streptomyces lividans TK24]
          Length = 672

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 103/303 (33%), Gaps = 50/303 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE L+ R            +TP  +  L   L             G  RT+ DP CGTG
Sbjct: 161 AYEFLLGRHLDANPRQYT--LTPDPLADLMAELA------------GPARTVLDPACGTG 206

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A              P     GQE +P   A       +  L      D +  I 
Sbjct: 207 SLLRAAA---------ATTRPGQELCGQESDPALAA-------LTALRLALSTDATVRIA 250

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G +L  D  TG R    L +PPF ++            +     R+  G P  ++  + 
Sbjct: 251 AGDSLRADARTGLRADAALCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELA 303

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           ++ H   ++      GG   +++  +        SG   +R  LL    + A++ALP   
Sbjct: 304 WVQHALARVRD----GGTVVVLMPPAAASR---RSG-RRVRADLLRRGALHAVIALPVGA 355

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
               N+  +LW+L   +    +  V L +        R     R +     R  +LD + 
Sbjct: 356 APPYNLPLHLWVLRRPERAPAQPGVLLADTGQFAGEGRGGPDWRSV-----RDAVLDAWT 410

Query: 458 SRE 460
           + +
Sbjct: 411 AFD 413


>gi|72161753|ref|YP_289410.1| type I restriction system adenine methylase [Thermobifida fusca YX]
 gi|71915485|gb|AAZ55387.1| putative type I restriction system adenine methylase [Thermobifida
           fusca YX]
          Length = 558

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 35/223 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +++DP CG G  L                 P     GQ+++P    +         L ++
Sbjct: 176 SVFDPACGLGSLLLAVG------------APDAQRTGQDIDPHAARLAQ-------LRAE 216

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                +  ++ G +L  D +   R    + +PP         +A     +     R+  G
Sbjct: 217 LEYSTTAEVRVGDSLRADAWPDHRVELVVCDPPTS-------NADWGREELLLDTRWELG 269

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  ++  + +L H           GGRA +V+S+S  +          IR  ++   L+
Sbjct: 270 LPPRAEAELAWLQHAYAHTAP----GGRAIVVMSTSAAYRRTGR----RIRSEMVRRGLL 321

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATD 429
             ++ALP  L    +   +LW+L    +E +   +V++++ +D
Sbjct: 322 TDVIALPAGLASAHSQPVHLWVLRRPTSESDAATEVRMVDMSD 364


>gi|126657630|ref|ZP_01728785.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
 gi|126621086|gb|EAZ91800.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
          Length = 1307

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 86/553 (15%), Positives = 174/553 (31%), Gaps = 44/553 (7%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           L+  L+       +++L    + ID E+  +           +         TR+ ++ Y
Sbjct: 308 LQDRLQKLYQEGMKRFLGEDVTYIDNEAIDQA----------FRFFKNDPDATRDTIKKY 357

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                      F   D  +     +   +L K+ +    I L  +   ++ + +++E  +
Sbjct: 358 FRQLKFFTNNDFAFIDVHNEKLFYQNGVVLLKLVQMLQDIRLKTEE-ENQFLGDMFEGFL 416

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +    + +    F TP  +V      L              I  + D  CG G FL + 
Sbjct: 417 DQ---GIKQSEGQFFTPIPIVKFILKSLPLEK---IFAESKEIPLVIDYACGAGHFLNEY 470

Query: 224 MNHVADCGSHHKIPPILVPHGQEL-EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +     +H    +   +   +   + + +      + ++ +        NI    +L
Sbjct: 471 AQEIKLIVENHSKNDLEKYYQNIVGIEKEYRLSK----VAKVSAFMYGQDEINIIYADSL 526

Query: 283 SK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG-ELGRFGPGLPKISDGSMLFLM 340
           +         +   ++NPPF  K   +    +   K            P  +     F+ 
Sbjct: 527 ATIPNIKENDYSILVANPPFSVKGFLETLEEKDRKKYQLIETIETKSYPNNNSIETFFIE 586

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES------EIRRWLLENDLIEAIVALP 394
                L+      G   I++ S  L  G+A S           R+ LL+   I AI    
Sbjct: 587 RAKQLLKPD----GVMGIIVPSPILTKGKAKSTSKSTNIYVATRKILLKYFDIIAITEFG 642

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
           +  F +T   T    L  RK E        +N  + W   + E  K +I  D+   +   
Sbjct: 643 SGTFGKTGTNTVTLFL-RRKPENPAPCDHFLNRVNTW--FKGEDNKDQIFQDEYLIKNYC 699

Query: 455 IYVSRENGKFSRMLD---YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            ++      +   L       F    I  L+  +  F    T + +L+    ++ LS   
Sbjct: 700 HHLEFNFEDYKTFLTGKINENFFNHDI--LKDYQKEF-YKWTEIKKLKKSRAFKALSKEA 756

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571
           +   LD       Q         FV  S+ + +   +K  +  + +  F+  +     + 
Sbjct: 757 KQEELDKRFMTYVQDIERDKLYYFVLASLNTQQVLIIKSPSKNTEMKEFL-GYEWSGRKG 815

Query: 572 DPVTDVNGEWIPD 584
                  G +  D
Sbjct: 816 SEGIKYLGNFKLD 828


>gi|17158081|ref|NP_478077.1| SsmT protein [Corynebacterium glutamicum]
 gi|17059600|emb|CAD12208.1| SsmT protein [Corynebacterium glutamicum]
          Length = 848

 Score = 97.4 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 115/338 (34%), Gaps = 65/338 (19%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F++  ++L+ A  L ++     G  L            I +  +    +   +    + T
Sbjct: 267 FANKTSQLDDA-TLRQLVVKIQGFRLTDAKTE-----TIQQIFMSFVPAVFKKELSQYFT 320

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  ++     ++            G+   + DP  GTG FL +A+               
Sbjct: 321 PISLIETVVEMVDI----------GITDKVVDPAMGTGDFLVEALE-----KRRGDDDIH 365

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G + +P  + + +  M++        +D    +    ++          +  L NP
Sbjct: 366 QRLFGADRDPSAYELAIVNMIL-------NKDGQTGLVLQDSIKNHTLWANEMNVALCNP 418

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--------------LFLMHLANK 345
           PFG +  +   +V + +  G            S+G M              LF+      
Sbjct: 419 PFGSRTVERSKSVLEAYDLGYKWEED------SNGVMYKTDEVLSSQQLGILFIERCWKM 472

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNI 403
           L       GR  I+L    L    +G+    +R+W++++ ++ A+V LP  +F     ++
Sbjct: 473 LTDQ----GRLGIILPEGYL----SGAKYKYLRQWIIDHFIVHAVVELPRRMFVKSDADL 524

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSI-RNEGKK 440
            + + IL       R           ++ S+ R  G K
Sbjct: 525 RSNILILEKSDAPSRN------AGRKIYASMVRKVGYK 556


>gi|330903552|gb|EGH34124.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 143

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 80  FYNTSEYSLSTLGST---NTRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGL- 132
           F+  S      L +    N  N L   +    +N      + E  DF+  + + +   L 
Sbjct: 9   FWVPSSSRFKHLLNEAHTNVGNLLNKALGGVEENNTSLDGVLEHIDFTRKVGQSKIPDLK 68

Query: 133 LYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L ++  +F  + L         +    YE+LI  F     +   +F TPR VV L   LL
Sbjct: 69  LRQLISHFGQVRLRNSDFEFPDLLGAAYEYLIGEFADSAGKKGGEFYTPRSVVRLMVRLL 128

Query: 192 LDPDDALFKESPGMIRTLYDPTCGT 216
                      P +   +YDP CG+
Sbjct: 129 ----------RPELKHDIYDPCCGS 143


>gi|182438223|ref|YP_001825942.1| putative restriction-modification system adenine methylase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178466739|dbj|BAG21259.1| putative restriction-modification system adenine methylase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 823

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 85/269 (31%), Gaps = 39/269 (14%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R            +TP  +  L   L   P D     S   +R++ DP  G
Sbjct: 284 GQAFEFLLGRHLDANPRQYT--LTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAG 341

Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           TG  L      A  +  +  +       L                        ++     
Sbjct: 342 TGSLLRAVTGPAALYAQEADAGLAALTALRLALCA------------------DATRDAP 383

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            S  ++ G TL  D F        L +PPF  +            +     R+  G P  
Sbjct: 384 ASPAVRTGDTLRADAFPRLATDTVLCHPPFNDRNWGHD-------ELAYDPRWEYGFPAR 436

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            +  + ++ H   +L      GG A +++  +        SG   IR  LL    + A++
Sbjct: 437 VESELAWVQHALARLRD----GGTAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVI 488

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ALP        I  +LW+L       R G
Sbjct: 489 ALPAGAAPPYGIPLHLWVLRRPTPGVRPG 517


>gi|218691195|ref|YP_002399407.1| putative Restriction enzyme subunit alpha [Escherichia coli ED1a]
 gi|218428759|emb|CAR09699.2| putative Restriction enzyme alpha subunit [Escherichia coli ED1a]
          Length = 629

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 71/452 (15%), Positives = 142/452 (31%), Gaps = 88/452 (19%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRNNL 100
           +R    L+ +R      +     S  D    V     +  NT+   + + L +   ++  
Sbjct: 171 KRHNDLLDFSRELHELIWAKAKISEEDKPLLVSGTLIALMNTTFMKTFNALPANELQDAW 230

Query: 101 ESYIASFSDNA------KA--------IFEDFDFSSTIARLEK---AGLLYKICKNFSGI 143
              I    + A      K         I    +     A++ +    G+  KI  +    
Sbjct: 231 LDAIRKELNKADIPQAKKDTMLQPYTYIAVHPNLGKPDAKIAREYPDGVFKKIITDIFEK 290

Query: 144 ELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                       V+   Y   + ++ +   +     +TPR +  L               
Sbjct: 291 VWPYINIYHDFDVVGQFYGEFL-KYTAGDKKALGIVLTPRHIAELF----------SLLA 339

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---ILVPHGQELEPETHAVCVAG 258
           +      + D   GTGGFL  AM  +       +           G E  P+  A+  + 
Sbjct: 340 NVTPESRVLDICAGTGGFLISAMQQMLKKAVTEEQRQDIRKNRLIGIENSPKMFALAASN 399

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
           M++R        D   N+ Q S   + +       + +  + NPP+ +            
Sbjct: 400 MILRG-------DGKANLHQASCFDEVINCAVKKMKPNVGMLNPPYAQA----------- 441

Query: 316 HKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                           SD  +    F+  + N LE    G    AIV  S  +       
Sbjct: 442 ---------------KSDAELHELYFVKQMLNCLEPGSYG---IAIVPMSCAISPN---- 479

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL-INATDL 430
               +R  LL +  ++A++++P +LF+   + T + +       +    K        D 
Sbjct: 480 ---PVREELLRHHTLDAVMSMPAELFYPVGVVTCIMVWIAGIPHDVSDRKTWFGYWRDDG 536

Query: 431 WTSIRNEGKK--RRIINDDQRRQILDIYVSRE 460
           +   +++G+           R + +++Y +RE
Sbjct: 537 FVKTKHKGRTDLYNRW-PSIRDRWVEMYRNRE 567


>gi|86151110|ref|ZP_01069326.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842280|gb|EAQ59526.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 1279

 Score = 97.0 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 149/468 (31%), Gaps = 27/468 (5%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  +S   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L  S L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPGSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIETE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+         ++  +  R +F        
Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKK 734

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L   +     +    L    +L   + + +    Y       +  I  
Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782


>gi|237751391|ref|ZP_04581871.1| site-specific DNA-methyltransferase [Helicobacter bilis ATCC 43879]
 gi|229372757|gb|EEO23148.1| site-specific DNA-methyltransferase [Helicobacter bilis ATCC 43879]
          Length = 641

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 132/407 (32%), Gaps = 75/407 (18%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAK-----------AIFEDFDFSSTIARLEKAG-L 132
            + L  L +   +++      + +DN K            +   F       ++ +    
Sbjct: 219 NFDLERLNTDKQKSDGIKIYEAIADNLKRANVRPEVKKDKLLSQFSIIKDTPKINETNST 278

Query: 133 LYKI-CKNFSGI-------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           L K   K+++          +      + ++   Y   + ++G    +     +TP+ + 
Sbjct: 279 LGKTPLKHYTEFLYKRIYQNIKYTQTSEDILGLFYSEFM-KYGGGDGQTLGIILTPKHIC 337

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LV 241
            L   L+                 ++DP CGT GFL  AM+++    +            
Sbjct: 338 ELFCDLV----------ELKPNDVVFDPCCGTAGFLIAAMHNMLSQVTDETQRQHIKENQ 387

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---FHYCLSN 298
             G E +P+   +    M++R        D   N++    L ++ F  ++       + N
Sbjct: 388 LFGIEEKPDMFCIATTNMIVRG-------DGKSNLENKDFLKQNPFELQKDIAASIGMMN 440

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+ +  + + +  E                               +L      G +A +
Sbjct: 441 PPYSQGSKANPNLYEIAFSE--------------------------QLLDSLTKGAKAIV 474

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           ++  S +        E  I+  +L+   +E ++    + F+       + I +       
Sbjct: 475 IIPQSAV--TGKSKEEKAIKANILKKHTLEGVITCNKNTFYGVGTNPCIAIFTAWIP-HH 531

Query: 419 RGKV--QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
           + K+   +    D +   +++G    I   D++  +L ++      +
Sbjct: 532 KDKICKFIHYEDDGFEVQKHKGLVETIHAKDKKAHLLKVWRDEMEAE 578


>gi|284926281|gb|ADC28633.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 1364

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 76/487 (15%), Positives = 155/487 (31%), Gaps = 34/487 (6%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  +S   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINMETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+         ++  +  R +F        
Sbjct: 675 NLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKR 734

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           L   +     +    L    +L   + + +    Y            + E   +K  +  
Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLY-------FSLSLNQEVLIIKSPSDI 787

Query: 555 SFIVAFI 561
                F+
Sbjct: 788 KEQKKFL 794


>gi|162456792|ref|YP_001619159.1| type I restriction-modification system M subunit [Sorangium
           cellulosum 'So ce 56']
 gi|161167374|emb|CAN98679.1| probable type I restriction-modification system,M subunit
           [Sorangium cellulosum 'So ce 56']
          Length = 360

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 17/163 (10%)

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE----KDKDAVEKEHK 317
             +      +    I+   +L+ D   G R+   L+NPPFGKK        +    +E  
Sbjct: 25  HGIGPSA-DEGQPPIETRDSLAAD--PGARYSMVLTNPPFGKKSSVMVLTQEGDESREAL 81

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 F       S+  + F+ H+   L +     GRAA+V+  + LF G A  GE+ I
Sbjct: 82  TVMREDFWATT---SNKQLNFVQHVKTILAIH----GRAAVVVPDNVLFEGGA--GET-I 131

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           RR LL +  +  ++ LPT +F+   +   +     +   E+  
Sbjct: 132 RRKLLHDCDVHTLLRLPTGIFYAQGVKANVLFFDKKPASEKPW 174


>gi|88596084|ref|ZP_01099321.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|88190925|gb|EAQ94897.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni 84-25]
          Length = 1365

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/487 (15%), Positives = 155/487 (31%), Gaps = 34/487 (6%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  ++   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+         ++  +  R +F        
Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNLAELEAFKDYRNAFRQTSDYKK 734

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           L   +     +    L    +L   + + +    Y            + E   +K  +  
Sbjct: 735 LKESKFYKESKDKQDLEDKAFLAYAQAIEKDKLLY-------FSLSLNQEVLIIKSPSDI 787

Query: 555 SFIVAFI 561
                F+
Sbjct: 788 KEQKKFL 794


>gi|84387340|ref|ZP_00990360.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
 gi|84377789|gb|EAP94652.1| putative restriction-modification system methyltransferase [Vibrio
           splendidus 12B01]
          Length = 1303

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 132/375 (35%), Gaps = 47/375 (12%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S ++E +++      +     F + + +  L  A+           +P    T+ DP 
Sbjct: 134 DISQLFEVILQ---ETRTPQTTQFSSSKFLSQLIVAI----------AAPKSGDTILDPC 180

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL  A N +    +           G +L  +   + +    +     +      
Sbjct: 181 AGEGSFLIAAHNAIEAAHTD--FLSQTSFTGYDLSEDAILIAMVRFFLSGA-FNFHLSRR 237

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
             + +  +  +D     ++   L+ PP G K          ++++    +  P +   +D
Sbjct: 238 SGLYE--SYGRDQHP--KYDVVLAQPPVGIK--------RDDYRHLSYEKQFPVI--TND 283

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             ++F+      L+     GGRA I +    LF       + E+RR+L+E+  IEA+V +
Sbjct: 284 IVVMFIQQALFSLK----LGGRAIIAIPEGLLF--GKNGSQIELRRYLVEHGYIEAVVRI 337

Query: 394 PTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           P  +    + I   L +LSN K   R  KV+  +    +   R+  K  + +      QI
Sbjct: 338 PPKMLIEDSGIRGALLLLSNSKKRNR--KVRFADLATYFH--RDINKSTQALPKALVEQI 393

Query: 453 LDIYVSRENGKFSRMLDYRTFGYRRIKVLR--PLRMSFILDKTGLARLEADITWRKLSPL 510
           L+     E    +  L     G +   V      R  +      +     D+   +    
Sbjct: 394 LEGLF-CEELPEAIPLPP---GVKEGTVGTGVSTRAFWDTSVEEIEGNNWDLNPVRNKDD 449

Query: 511 HQSFWLDILKPMMQQ 525
             +  L   + +M  
Sbjct: 450 ALTLLLTDFRKLMGD 464


>gi|326778874|ref|ZP_08238139.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326659207|gb|EGE44053.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 784

 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 85/269 (31%), Gaps = 39/269 (14%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              +E L+ R            +TP  +  L   L   P D     S   +R++ DP  G
Sbjct: 245 GQAFEFLLGRHLDANPRQYT--LTPPHLAELMADLAEPPADEGRPASARPLRSVLDPAAG 302

Query: 216 TGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           TG  L      A  +  +  +       L                        ++     
Sbjct: 303 TGTLLRAVTGPAALYAQEADAGLAALTALRLALCA------------------DATRDAP 344

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            S  ++ G TL  D F        L +PPF  +            +     R+  G P  
Sbjct: 345 ASPAVRTGDTLRADAFPRLATDTVLCHPPFNDRNWGHD-------ELAYDPRWEYGFPAR 397

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            +  + ++ H   +L      GG A +++  +        SG   IR  LL    + A++
Sbjct: 398 VESELAWVQHALARLRD----GGTAVLLMPPAAASR---RSG-RRIRADLLRRGALRAVI 449

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRG 420
           ALP        I  +LW+L       R G
Sbjct: 450 ALPAGAAPPYGIPLHLWVLRRPTPGVRPG 478


>gi|317011606|gb|ADU85353.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori SouthAfrica7]
          Length = 679

 Score = 96.2 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 117/351 (33%), Gaps = 72/351 (20%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           LY++      I    +T    +M  +Y   + ++     +     +TP  V  + + LL 
Sbjct: 321 LYELVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240
               +           + D   G+ GFL  +M  + +                 K     
Sbjct: 378 VNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKAMKTT 427

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSN 298
              G EL  E  ++    M++R        D S  I +G+T   +   +   + +  L N
Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETNKKTYEDFKPNILLLN 480

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  +                               M F+      ++     GG  AI
Sbjct: 481 PPFSHEENG----------------------------MPFIKFGLEHMQK----GGLGAI 508

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++  S    G   + +S +   +L+   + A V +PTDLF     + T ++I    +  +
Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHTLLASVKMPTDLFMPQAGVQTSVYIFKAHEPHD 563

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               V+ I+  +        G         +  +I+ IY +  + K S+ L
Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNETSSPTKRYEEIIKIYKAGLSAKVSKEL 614


>gi|289765284|ref|ZP_06524662.1| type I restriction-modification system [Fusobacterium sp. D11]
 gi|289716839|gb|EFD80851.1| type I restriction-modification system [Fusobacterium sp. D11]
          Length = 601

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 119/341 (34%), Gaps = 49/341 (14%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           +      + +    L KI K    I    D +P  +   +YE L  +   +      +F 
Sbjct: 81  EIDKNSNKKKNESTLMKIHKAIEEINSTND-LPIDLFGEVYECLASK---KTKSMLGEFF 136

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------- 231
           T R ++     +     D          + + DP CGTGGFLT++  ++ +         
Sbjct: 137 TRRHIIKAIVRMFFSSKDIKDIIK--YKKIIVDPACGTGGFLTESFKYIKNYCEKEKKLS 194

Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288
                     +  G ++   +       M++         D   +I + +TL  + +   
Sbjct: 195 KKEISELANKIIVGYDINANSIGRTRINMILTG-------DGFSDIDRYNTLQANWYNQK 247

Query: 289 -----GKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHL 342
                 K   Y L+N P+G+      +    E  KN +  R            + F++ +
Sbjct: 248 ENSGIKKDVDYVLTNVPYGQGDYAVSNKESDEFIKNNKNKRL----------ELNFVLKI 297

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401
              L+     GGRA+I+L    L         S  R +LL    IE I++LP   F   T
Sbjct: 298 IEMLKE----GGRASIILPEGLL----EAPTLSNFRDYLLRQCKIETIISLPKFAFAPYT 349

Query: 402 NIATYLWILSNR-KTEERRGKVQLINATDLWTSIRNEGKKR 441
              TY+  L  R K  E   KV   N       + N+G   
Sbjct: 350 KWKTYVIFLEKREKILETIEKVINKNEKIWCYIVDNDGYAN 390


>gi|225568966|ref|ZP_03777991.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM
           15053]
 gi|225162465|gb|EEG75084.1| hypothetical protein CLOHYLEM_05045 [Clostridium hylemonae DSM
           15053]
          Length = 621

 Score = 96.2 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 122/377 (32%), Gaps = 51/377 (13%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           + +  +  FS+    +    +    I R     +L  +    S    +        ++  
Sbjct: 73  DFKVAVHRFSEKVDWVL--VENDEEIQR-----ILGDVENYISTYMRNDVCGKGEGITEK 125

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            + L++              TP  V  L   LL               + + D  CGTG 
Sbjct: 126 MDVLLQAVLELEGWSGTYQSTPASVQKLVAELLSGSQA----------KHMLDLCCGTGL 175

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           +     + ++           L   G E+EP    +    + +  +E          I +
Sbjct: 176 YGLTLYHKLSRENPA------LTFCGIEVEPVLCDIADINLYLHGVE-------RGRIVK 222

Query: 279 GSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              L+       +     + + P G    +  D   ++++     +             +
Sbjct: 223 TDLLALPRSTVEELADLIVMDIPRGNNVAETYD--RRDYRLIHFDKQHIY------SDWI 274

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+     +L +     GRAA++ +S  L        E  +R  ++ +D +EA++ LP++L
Sbjct: 275 FIQDALYRLNVK----GRAAVLATSGALIRLN----EKGLREQIVLSDWLEAVITLPSNL 326

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           + R  I T L I +  K  ERR K+  I+ +  +   +        + ++        Y 
Sbjct: 327 YPRMGIGTELLIFNKNKRPERREKILFIDISSYYKIEKR---NMCAVTEEGIYIAGKCYR 383

Query: 458 SREN-GKFSRMLDYRTF 473
                   S ML     
Sbjct: 384 HGTELSGISVMLKSTDL 400


>gi|296875872|ref|ZP_06899933.1| type II DNA modification protein [Streptococcus parasanguinis ATCC
           15912]
 gi|296433113|gb|EFH18899.1| type II DNA modification protein [Streptococcus parasanguinis ATCC
           15912]
          Length = 811

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/392 (15%), Positives = 115/392 (29%), Gaps = 87/392 (22%)

Query: 76  AGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF-SSTIARLE------ 128
              +FYN       +       +NL           K I E      + +  LE      
Sbjct: 203 KSENFYNNFPDLYPSYTPIQILDNLY-------PTVKGILEKEGIPENKLRALEGELGSI 255

Query: 129 -------KAGLLYKICKNFSGI-----ELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAE 175
                     +L +I    +         H  T  +   M   YE  + +F    +    
Sbjct: 256 KTDVNLQNTAILKQILDELNQKVIPLFNNHFSTNSNYDIMGKFYEEFL-KFAGVSNVKKG 314

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             +TPR +  L T L+    + +            D  CGTG FL   MN +       +
Sbjct: 315 IVLTPRHITGLFTKLIPLKANDVI----------LDLCCGTGAFLIAGMNKLLSIQGADE 364

Query: 236 IP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---- 290
                    G E+    +   ++ ML R        D    I    ++  D    K    
Sbjct: 365 KNIKENQLLGFEINSTMYICAISNMLFRG-------DGKSRIYNLDSV-NDKEADKILKE 416

Query: 291 -RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
            +      NPP+  K  KD    ++                               L+  
Sbjct: 417 VKPTIGFINPPYSGKENKDDPTPKE----------------------------ITFLKKL 448

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLW 408
            +   R  +V++   ++          +R  +L    ++ ++ +P DLF    + +T + 
Sbjct: 449 LDNCSRYGVVIAPLSMYFKD-----KSLRNKILSKHTLKYVINMPKDLFQPNASTSTAIA 503

Query: 409 ILSNRKTEERRGKVQLINA-TDLWTSIRNEGK 439
           +       +    V   +   D +   +N+G+
Sbjct: 504 VFETHLPHDYNNDVVFYDLKNDGFILSKNKGR 535


>gi|57168922|ref|ZP_00368052.1| type I restriction modification enzyme [Campylobacter coli RM2228]
 gi|57019758|gb|EAL56444.1| type I restriction modification enzyme [Campylobacter coli RM2228]
          Length = 1343

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 150/468 (32%), Gaps = 27/468 (5%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  ++   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+         ++  +  R +F        
Sbjct: 675 NLKDNESFYQNYLNTYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKK 734

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L   +     +    L    +L   + + +    Y       +  I  
Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782


>gi|315639044|ref|ZP_07894213.1| N-6 DNA methylase superfamily protein [Campylobacter upsaliensis
           JV21]
 gi|315480872|gb|EFU71507.1| N-6 DNA methylase superfamily protein [Campylobacter upsaliensis
           JV21]
          Length = 695

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 109/358 (30%), Gaps = 62/358 (17%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           Y    Y        + +  LE  I    +  K    +  F + +  +  A  +  + +N 
Sbjct: 222 YKIEFYEFQKNRDED-KFALEKRIKGLYERYKEKDSNV-FDNAL--ILDADEIKFLVENL 277

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             I          +   I++     F       A  + TP ++V           D L  
Sbjct: 278 ESI--SLSETELDIKGKIFQKFFEDF---FKGKAGQYFTPPNIVRFVVECFDISKDDL-- 330

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVAD----CGSHHKIPPILV------PHGQELEPE 250
                   + DP+CG+GGFL   + ++ +        +              +G E+   
Sbjct: 331 --------VLDPSCGSGGFLLRTLIYMQEESKKLDGEYNQKRFWHSFAEKNLYGIEINGG 382

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFG 302
                   M+I         D   N+     L          + F    F++  +NPPFG
Sbjct: 383 ISQAAKMQMIIH-------DDGHTNVITADGLDSFENFIKKNNKFQKNTFNFIFTNPPFG 435

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLP-KISDGSM-------LFLMHLANKLELPPNGGG 354
                 K   E          F   +  K S   +       LFL      L+     GG
Sbjct: 436 SSIPASKPYFEDFSFAKSEVHFIDKIIDKKSPKDLSAQKSEILFLERYFEFLKE----GG 491

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWIL 410
             A VL    L N         +R +LLE   + A  +LP   F  +   + + + +L
Sbjct: 492 IVACVLPDGILTNSSLQ----NVRDYLLERFYLLASFSLPQHTFSNYGAGVKSSILVL 545


>gi|296285046|ref|ZP_06863044.1| N-6 DNA methylase [Citromicrobium bathyomarinum JL354]
          Length = 866

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 108/321 (33%), Gaps = 66/321 (20%)

Query: 134 YKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
             +      ++       D  +    +E  +        +G   + TPR +V     L  
Sbjct: 256 GTVADLLEKLQPFSVRSEDVDLKGRAFEEFLP--SQLRGKGLGQYFTPRPLVEFMCDLAE 313

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD----------------CGSHHKI 236
                          TL D  CG+GGFL +A   + +                  S  + 
Sbjct: 314 VSLSD----------TLLDFACGSGGFLINAYERMREEVELIPAGTLQRLGETRESLIED 363

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF---- 292
                  G + EP         ML+            + + +G+ L+    TGK +    
Sbjct: 364 VKSKQIFGIDAEPRAARTARMNMLLWG--------DGRCVMRGNALASQDLTGKPYPISP 415

Query: 293 ----------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                        L+NPPFG + ++ K   +    + +  R      K     +LF+   
Sbjct: 416 YKKSDNNSGCSLILANPPFGAREKEQKVLKKYIFGSKKRQR------KSQKTEVLFVERA 469

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L       GR AIVL +  L    +    S++R ++  +  + A+V+LPT  F ++ 
Sbjct: 470 MELLRPE----GRMAIVLPTGLL----SADTYSDLRGFIARHAKVNAVVSLPTHAFVQSG 521

Query: 403 IAT-YLWILSNRKTEERRGKV 422
           + T    IL  +K  E   K+
Sbjct: 522 VPTVNTVILYVQKHSESSRKI 542


>gi|261838746|gb|ACX98512.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori 51]
          Length = 535

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 133/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 118 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 172

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 173 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 214

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 215 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 264

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 265 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 317

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 318 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 349

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G  AAI++  S    G   + +S I   +L+   + A + +PTDLF 
Sbjct: 350 KFGLEYMQK----GALAAIIIQDS---TGSGQALKSNI--EILKKHSLLASIKMPTDLFM 400

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 401 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 460

Query: 459 RENGKFSRML 468
             N K S+ L
Sbjct: 461 GLNAKVSKEL 470


>gi|196233547|ref|ZP_03132389.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
 gi|196222399|gb|EDY16927.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
          Length = 363

 Score = 95.8 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 105/285 (36%), Gaps = 32/285 (11%)

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           G+ L++   A  L+      GRAA+V+++S      A   E++IRR L+E +LI  ++ L
Sbjct: 2   GNYLWINLFATSLKPT----GRAALVMANSA---SDARHSEADIRRKLIEENLIYGMLTL 54

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P+++F+   +   LW     KT+    ++  I+A +++T I    ++      +    I 
Sbjct: 55  PSNMFYTVTLPATLWFFDRAKTD---DRILFIDARNVFTQIDRAHREFSTAQVNNLAIIS 111

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPL--RMSFILDKTGLARLEADITWRKLSPLH 511
            ++  R   +F  ++D     Y    + R L  R         L  +  D   +K     
Sbjct: 112 RLHKGRRE-EFVELVDR----YFAFGMERLLENRKRVQPVSGQLLEVLEDAAGKKAVGEL 166

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD--- 568
              W  + K +  +   Y           K N+A+    +A   F         + D   
Sbjct: 167 VKQWAGLGK-LEARYDQYRKGAGDSAPIEKRNKAQHQLREAFDPFFTGLHEGLKQLDRIV 225

Query: 569 -----PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVS 608
                 +A+           D             ++++   REV 
Sbjct: 226 RQHEKEQAEAAQKEGKRGSTDRQTR-----ALKTALEE-LHREVK 264


>gi|322513587|ref|ZP_08066687.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976]
 gi|322120658|gb|EFX92552.1| N-6 DNA methylase [Actinobacillus ureae ATCC 25976]
          Length = 802

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 147/482 (30%), Gaps = 63/482 (13%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSD 109
            +  ++E   A   S I +    KV   S+  N +   L T       + L +   S + 
Sbjct: 185 HKKKIKESNRALLISGILVALQNKVFRISYKENKTPQDLITSLLNAISSELRAD-KSKNK 243

Query: 110 NAKAIFEDFDFSSTIARLEKAGL-LYKICKNFSGIELH-----PDTVPDRVMSNIYEHLI 163
           NA  +   F+F  +    E     L  +    + I+ +             +S  Y   +
Sbjct: 244 NADTVLGAFNFIRSNKTFEDDKTGLLNLLSVINSIKDNVYTFLDKYKYIDTLSQFYIEFL 303

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R   +   +G    +TP  +  L   +     D +          + D   GTGGFL  A
Sbjct: 304 RY--ANTDKGLGIVLTPLHIAQLFAKMAGVNKDTV----------VLDNAAGTGGFLVAA 351

Query: 224 MNHVADCGSHHKIP----PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           M  +       +           +G E E    A+ V+ M+I         D   NI  G
Sbjct: 352 MGEMILDAGDDEKKILDIKKNQIYGIEYEDSILALLVSNMIIH-------SDGRSNIYWG 404

Query: 280 STLS--KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG---ELGRFGPGLPKISDG 334
           ++     D     + +          +  K ++    E+K         F        + 
Sbjct: 405 NSFDIIPDKLLKYKDYNKNKKEDEIIQSLKYENINLDENKIDVGLLNPPFKMATDDTEEF 464

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             +F     + L     GG   A++ +S                + LL N  +EA+V+LP
Sbjct: 465 EFIF-----SNLNAIKKGGTVIALIPTSVINDTSGVNYINK---KKLLRNHTLEAVVSLP 516

Query: 395 TDLFFR--TNIATYLWILSNRKTEERRGKVQL-INATDLWTSIRNEGKK--------RRI 443
            DLF    T+I T   +++      +  +        D +   +N G+            
Sbjct: 517 EDLFANSKTSIVTVGIVITAHIPHPKLKETWFGYWRDDKFVKTKNLGRADINQEWYGENK 576

Query: 444 INDDQRRQILDIYVSRENGKFSRMLDYRT--------FGYRRIKVLRPLRMSFILDKTGL 495
           + +      ++     +     R+               Y  + +   L+  +      +
Sbjct: 577 LQEQWLSSFINKKEDYQFSIKRRVTADDEWLAEAYLKTNYSSLTIDTVLKPCYQYMAFRI 636

Query: 496 AR 497
             
Sbjct: 637 EN 638


>gi|57237937|ref|YP_179185.1| type II restriction-modification enzyme [Campylobacter jejuni
           RM1221]
 gi|57166741|gb|AAW35520.1| type II restriction-modification enzyme [Campylobacter jejuni
           RM1221]
 gi|315058494|gb|ADT72823.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M / Type I restriction-modification system,
           specificity subunit S [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 1343

 Score = 95.4 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 150/468 (32%), Gaps = 27/468 (5%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  ++   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKT--G 494
             K               +   +   +S  L+         ++  +  R +F        
Sbjct: 675 NLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNLAELEAFKDYRNAFRQTSDYKK 734

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           L   +     +    L    +L   + + +    Y       +  I  
Sbjct: 735 LKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIK 782


>gi|262191973|ref|ZP_06050139.1| type I restriction-modification system M subunit putative [Vibrio
           cholerae CT 5369-93]
 gi|262032148|gb|EEY50720.1| type I restriction-modification system M subunit putative [Vibrio
           cholerae CT 5369-93]
          Length = 684

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/393 (16%), Positives = 114/393 (29%), Gaps = 86/393 (21%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F+ +        G    R  +             IF     +  I   ++A  L  +   
Sbjct: 240 FWASPTEQFDDEGRKKIRARINPLFEKVKKAYPEIFAG---NEEITLSDRA--LAFMVSE 294

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            +  +     +        Y+ ++      +      + TPR  + L   ++        
Sbjct: 295 LAKYDFTRTEMD--AKGAAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMM-------- 341

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC--------------------GSHHKIPPI 239
             +P     + DP+CGTGGFL   ++ +                           K    
Sbjct: 342 --APQPHEKVLDPSCGTGGFLEQTLSFINKQLREKEAISLAAETTEEFISIQQQIKEFAE 399

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------------- 286
               G + +P         +++         +   NI   ++L                 
Sbjct: 400 NNLFGCDFDPFLCRASQMNVVM-------ASNAMANIYHMNSLEYPHGHLKGVDPAKKTI 452

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPG----LPKISDG- 334
                          L+NPPFG         + +++       R   G      +  D  
Sbjct: 453 PVGDSSGKDGSVDVILTNPPFGSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAV 512

Query: 335 --SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LF+      L+     GGR  IVL    L       G+  IR WL++   +   V 
Sbjct: 513 SPEILFIERCVQWLKQ----GGRMGIVLPDGIL----GNPGDEYIRWWLMQECWVLGCVD 564

Query: 393 LPTDLF---FRTNIATYLWILSNRKTEERRGKV 422
           LP + F      NI T L  L  +KT+  +  +
Sbjct: 565 LPVESFIVEANVNILTSLLFL-KKKTDTEKDAI 596


>gi|254410126|ref|ZP_05023906.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196183162|gb|EDX78146.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 679

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 130/409 (31%), Gaps = 46/409 (11%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +++    P  ++   ++ LI     ++      F TPR +V    ++            P
Sbjct: 137 DINLVESPSYIIGEAFQALIG---PKLRGDKGQFFTPRSLVKTMVSI----------ADP 183

Query: 204 GMIRTLYDPTCGTGGFLTDAMNH-VADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LI 261
                + DP CGTG FL+++ N+ +   G            G + + +   +  A + +I
Sbjct: 184 KPYSKVVDPACGTGSFLSESYNYWIETTGETLLPDNHYSLVGLDKDKDISRLATATLEII 243

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                      S +I     L    F+ K F     L+NPPFG K    ++++ +++  G
Sbjct: 244 APNNYSVFTTDSLDINH---LIASGFSSKIFDADVVLTNPPFGAKIGVTRESILEQYDLG 300

Query: 320 ELGRF---------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               F            + K  D  +LF+      L+     GG   IVL      N + 
Sbjct: 301 HHWYFSSTENSWIKSDKVRKNQDPQILFIELCVKILKP----GGVLGIVLPEGVFGNKQT 356

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG-----KVQL 424
           G        +L +  +I A++  P   F   T+  T +      K +         KV +
Sbjct: 357 GYIWD----YLHQEGIITALLDCPRTTFQPGTDTKTNVLFFQKFKDKSHNKTRYPIKVPI 412

Query: 425 INATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL 484
             A       R  G+             + I    ++   S+             V R  
Sbjct: 413 AVALHCGHDRR--GRVTLENGQKYPDDFITIAHEFKDNNSSKYWSNCEVNNPYYWVPRFY 470

Query: 485 RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
             S           E          L +S ++ I K        YG   
Sbjct: 471 DASLSKSIQK-KAFEMHADLASFDELIKSGYIAIRKGHEVGSQAYGTGN 518


>gi|297157985|gb|ADI07697.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces bingchenggensis BCW-1]
          Length = 769

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 91/254 (35%), Gaps = 33/254 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE LI R            +TP ++  L  AL    D+     SP    T+ DP  GTGG
Sbjct: 187 YEFLIGRHLDANPRQYT--VTPPELAELMAALAGLADEPTGPLSPAP--TVLDPASGTGG 242

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L   +          +   +   + QEL+ +  A+       R   +   +     +  
Sbjct: 243 LLWAVL----------RTHSVATLYAQELDRDLAALTAL----RLALTHEGQGTQVRVHG 288

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L  D          +S+PPF ++            +     R+  G P  ++  + +
Sbjct: 289 GDSLRADALPQLAADAVVSHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELAW 341

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H    L      GG A +++  +        SG   IR  LL    + A+VALP    
Sbjct: 342 VQHALAHLRD----GGTAVLLMPPAVASR---RSG-RRIRADLLRRGALRAVVALPAGAA 393

Query: 399 FRTNIATYLWILSN 412
               I  +LW+L  
Sbjct: 394 PPYGIPLHLWVLRR 407


>gi|254391268|ref|ZP_05006473.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294816307|ref|ZP_06774950.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444637|ref|ZP_08219371.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197704960|gb|EDY50772.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
 gi|294328906|gb|EFG10549.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 666

 Score = 95.0 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 101/276 (36%), Gaps = 37/276 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +   YE L+ R+    +   +   TP  +  L  AL     D          RT+ DP C
Sbjct: 126 VGPTYEFLLERW--LGAHVRQVTTTPGQLAELMVALAAPSGD--------RPRTVLDPAC 175

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTGG L  A +H             L   G ++ P    +    +    L     R +  
Sbjct: 176 GTGGLLLTAGHH-------WSSRRRLDLLGADISPVLTRLARGRVATAGLP----RSVRT 224

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            I+ G TL  D++  +R    L NPP+  +    +       +     R+    P  ++ 
Sbjct: 225 QIRTGDTLRSDVWPEERADVVLCNPPYNTRDWGHE-------ELATDPRWVFAHPPRTEP 277

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + ++ H  ++L      GG A ++L                IR  LL    + A++ALP
Sbjct: 278 ELAWVQHALSRLAD----GGTAVLLLPPGV----AKRRAGRRIRAGLLRTGALRALIALP 329

Query: 395 TDLFFRTNIATYLWILSNRKTEE-RRGKVQLINATD 429
                  ++  +LW+L     +      + L++A D
Sbjct: 330 VGSAPPHSVGLHLWLLRKPAEDAPPPTTLLLVDAED 365


>gi|72536282|gb|AAZ73197.1| hypothetical protein [Escherichia coli]
          Length = 246

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 53/193 (27%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               ++YE+L+ +  +        F TPR ++     ++        + +P    T+ DP
Sbjct: 60  DTKGDLYEYLLSKLTTAG--INGQFRTPRHIIRTMVEMM--------EPNPARGETICDP 109

Query: 213 TCGTGGFLTDAMNHVADCGSH------------------------------HKIPPILVP 242
            CGTGGFL  +  ++ +  S                                      + 
Sbjct: 110 ACGTGGFLATSYEYLLEKYSSLESIHTEIGTNERGELEEQKIFTGDLLTPWRNHVDNNMF 169

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFHYCL 296
           HG + +     +    +++  +E       + +I    T+S+         +   F+  L
Sbjct: 170 HGYDFDTTMLRIAAMNLIMHGVE-------APDIHYQDTMSQSFSTNFPQASKNAFNLIL 222

Query: 297 SNPPFGKKWEKDK 309
           +NPPF    +++ 
Sbjct: 223 ANPPFTGSLDEED 235


>gi|292630956|gb|AAF77188.2|AF264911_4 restriction and modification enzyme CjeI [Campylobacter jejuni]
          Length = 1273

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 73/485 (15%), Positives = 153/485 (31%), Gaps = 30/485 (6%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  ++   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKNSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L +  F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGSQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLA 496
             K               +   +   +S  L+         ++  +  R +F        
Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSNLAELEAFKDYRNAFRQTSD--- 731

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                +   K+    +       K  +         +        + E   +K  +    
Sbjct: 732 --YKKLKESKIYKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKE 789

Query: 557 IVAFI 561
              F+
Sbjct: 790 QKKFL 794


>gi|283956931|ref|ZP_06374404.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791657|gb|EFC30453.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 242

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 108/277 (38%), Gaps = 41/277 (14%)

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKD 310
           + V  M++  +        S NI + +TLSK   D+   +++   L NPPFG K ++   
Sbjct: 1   MGVMNMILHEI-------SSPNIIKTNTLSKKITDITEQEKYEVILVNPPFGGKEKEQIQ 53

Query: 311 AVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                             P  S+   +LFL H+   L+      GR AI++    LF   
Sbjct: 54  ENF---------------PIKSNATELLFLQHILRSLK----NNGRCAIIVPEGVLFQN- 93

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINAT 428
             +    +++ LL++  +E +++LP+ +F   + + T +   S  K     G     +  
Sbjct: 94  -SNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKCICEG-----DGV 147

Query: 429 DLWTSIRNEG-KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
             +  I      K + +     ++ L  Y  R+    S ++  +    R        +  
Sbjct: 148 YYYELIPPYKLTKNKPLEYTHFKEFLKCYKERKITANSWLVSKKELEERNY--DLSAKNP 205

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
            + ++  L   E  +   + +   Q  +L+ LK +++
Sbjct: 206 NVKEEKILKTSEEILNSLEENLKIQQEYLNELKSILK 242


>gi|209406225|ref|YP_002154434.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Shi470]
 gi|190195547|gb|ACE73643.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Shi470]
          Length = 891

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   + +S +   +L+   + A + +PTDLF 
Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N + S+ L
Sbjct: 605 GLNAEVSKEL 614


>gi|24373032|ref|NP_717074.1| type I restriction-modification system, M subunit, putative
           [Shewanella oneidensis MR-1]
 gi|24347201|gb|AAN54519.1|AE015590_1 type I restriction-modification system, M subunit, putative
           [Shewanella oneidensis MR-1]
          Length = 684

 Score = 95.0 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 114/395 (28%), Gaps = 86/395 (21%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           F+ +        G    R  +             IF     +  I   ++A  L  +   
Sbjct: 240 FWASPTEQFDDEGRKKIRARINPLFEKVKKAYPEIFSG---NEEIILSDRA--LAFMVSE 294

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            +  +     +        Y+ ++      +      + TPR  + L   ++        
Sbjct: 295 LAKYDFTRTEMD--AKGAAYQEVVG---DNLRGDRGQYFTPRGAIKLIVEMM-------- 341

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVAD--------------------CGSHHKIPPI 239
             +P     + DP+CGTGGFL   ++ +                           K    
Sbjct: 342 --APQPHEKVLDPSCGTGGFLEQTLSFINRKLCEEEEVKLGAETTEEFISIQQQIKKFAE 399

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------------- 286
               G + +P         +++         +   NI   ++L                 
Sbjct: 400 NNLFGCDFDPFLCRASQMNVVM-------ASNAMANIYHMNSLEYPHGHLKGVEPAKSKI 452

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-LGRFGPG----LPKISDG- 334
                          L+NPPFG         + +++       R   G      +  D  
Sbjct: 453 PVGDSSGKDGSIDVILTNPPFGSDIPVTDKQILEQYDLAYVWERTENGGFRKTERRKDAV 512

Query: 335 --SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              +LF+      L+     GGR  IVL    L       G+  IR WL++   +   V 
Sbjct: 513 SPEILFIERCVQWLKQ----GGRMGIVLPDGIL----GNPGDEYIRWWLMQECWVLGCVD 564

Query: 393 LPTDLF---FRTNIATYLWILSNRKTEERRGKVQL 424
           LP + F      NI T L  L  +KT+  +  +  
Sbjct: 565 LPVESFIVEANVNILTSLLFL-KKKTDTEKDAIAF 598


>gi|218562667|ref|YP_002344446.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|112360373|emb|CAL35169.1| restriction modification enzyme [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315927941|gb|EFV07263.1| type I restriction modification DNA specificity domain protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 1339

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 74/485 (15%), Positives = 152/485 (31%), Gaps = 30/485 (6%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L  P   +  +S   +
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLQEMLSKSSKAL 443

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRR 263
           R + D  CG G FL    N +    +  ++       +G E E     V      M  + 
Sbjct: 444 R-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 264 LESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
             +    D   + +  +T       +K       F   ++NPP+    +   + +  + K
Sbjct: 503 EINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSK 560

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           N           + ++    F      +     N   +AAI+L SS L      S     
Sbjct: 561 NTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILPSSIL---NKDSIYKNT 614

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  L +N    AIV L    F  T   T +  L  ++T ++   +   + + +   I  E
Sbjct: 615 REILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAE 674

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLA 496
             K               +   +   +S  L+         ++  +  R +F        
Sbjct: 675 NLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSD--- 731

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSF 556
                +   K+    +       K  +         +        + E   +K  +    
Sbjct: 732 --YKKLKESKIYKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKE 789

Query: 557 IVAFI 561
              F+
Sbjct: 790 QKKFL 794


>gi|169830730|ref|YP_001716712.1| hypothetical protein Daud_0539 [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637574|gb|ACA59080.1| hypothetical protein Daud_0539 [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 148

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          M  F         FIW  A+ L G ++   +  V+LP T+LRRL+C LEPT+  V EK  
Sbjct: 6  MNNFGEK----VAFIWSVADLLRGPYRPNQYKDVLLPMTVLRRLDCVLEPTKDQVLEKIK 61

Query: 61 AFGGSNID 68
              S + 
Sbjct: 62 TLQESKVK 69


>gi|313143599|ref|ZP_07805792.1| restriction modification enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128630|gb|EFR46247.1| restriction modification enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 1211

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 123/389 (31%), Gaps = 42/389 (10%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
              L + + +  ++ +I      +   F   +  +    L+ A +L +I + F+      
Sbjct: 405 FKKLHANDLKAQIQKHIKELKFYSNNDFAFLEVHNKELFLQNAIVLKEIIELFA-PYKLT 463

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
               ++ + N++E  +++   +       F TP  +       L  P D++ K S  +  
Sbjct: 464 QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLDSMTKASKPL-- 516

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + D  CG G FL    N +               +G E E     V      +      
Sbjct: 517 KVLDFACGAGHFLNTYANELKRYIKQDLQEHYKQIYGIEKEYRLSKVAKVSSAMYGQNEI 576

Query: 268 PRRDLSKNIQQGSTLS---------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                  NI     L+               K       F   ++NPP+    +   + +
Sbjct: 577 -------NILYADALATHELENPKTDKGNKQKPQINNHSFDLLIANPPYSV--KGFLETL 627

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             + K            + ++    F      +         +AAI+L SS L       
Sbjct: 628 SAKSKKIYTLFTNDINIETNNAIECF---FIERANQLLRDNAKAAIILPSSIL---NKDG 681

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
                R  L  N    AIV L +  F  T   T +  L  ++             +  ++
Sbjct: 682 IYKSTREILFANFDFIAIVELGSQTFGATGTNTIILFLRKKENYTPENTTI----SQDYS 737

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I+N  +   ++ ++  +  +  + +  +
Sbjct: 738 NIKNYIESGNLLRNETYKNYVKAFNAYCD 766


>gi|332559082|ref|ZP_08413404.1| putative restriction endonuclease, N6_Mtase domain protein
           [Rhodobacter sphaeroides WS8N]
 gi|332276794|gb|EGJ22109.1| putative restriction endonuclease, N6_Mtase domain protein
           [Rhodobacter sphaeroides WS8N]
          Length = 876

 Score = 94.7 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 121/361 (33%), Gaps = 80/361 (22%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +   +   ++E  +    +   +    F TPR V  L   LL DP     +        
Sbjct: 305 GIDADLNGRLFETFLS--ATMRGKDLGQFFTPRSVAKLGA-LLADPQVDRARM-----EF 356

Query: 209 LYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQE--LEPETHAV 254
           + D  CGTGGFL + ++ +             +  +  +       +G +   EP    +
Sbjct: 357 VLDGCCGTGGFLIEVLSDMWAKINANPVLSETEKANLRRRVAETAIYGIDSAQEPNLARL 416

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-----------------------LFTGKR 291
               M +         D   +I +   L K+                             
Sbjct: 417 ARMNMYLHG-------DGGSSIYEADFLDKNVTDPVQATAEVRAEVRQFREMLLSHPSGL 469

Query: 292 FHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
               L+NPPF K +++    ++ +  E++            +    S++F     + L+ 
Sbjct: 470 VDVVLTNPPFAKVYDRKTERENLILAEYEL-------AATEEKLKSSLMFFERYHDLLK- 521

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATY 406
               GGR   V+    L    +GS  +E R +L    LI  IV+LP D F R+   + T 
Sbjct: 522 ---IGGRLISVIDDGIL----SGSSYAEFRNYLRRKFLIRGIVSLPGDAFQRSQARVKTS 574

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR--------RIINDDQRRQILDIYVS 458
           + IL  R     + +         +  + +  ++R        R +  ++  ++  +Y  
Sbjct: 575 IVILEKRDPTSEQDQGPAFRYACRYVGVDDPKRQRTLPIDVETRRLAKEEIARVSSLYKD 634

Query: 459 R 459
            
Sbjct: 635 F 635


>gi|224437132|ref|ZP_03658113.1| type II restriction-modification enzyme [Helicobacter cinaedi CCUG
           18818]
          Length = 1171

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 123/389 (31%), Gaps = 42/389 (10%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
              L + + +  ++ +I      +   F   +  +    L+ A +L +I + F+      
Sbjct: 365 FKKLHANDLKAQIQKHIKELKFYSNNDFAFLEVHNKELFLQNAIVLKEIIELFA-PYKLT 423

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
               ++ + N++E  +++   +       F TP  +       L  P D++ K S  +  
Sbjct: 424 QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLDSMTKASKPL-- 476

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + D  CG G FL    N +               +G E E     V      +      
Sbjct: 477 KVLDFACGAGHFLNTYANELKRYIKQDLQEHYKQIYGIEKEYRLSKVAKVSSAMYGQNEI 536

Query: 268 PRRDLSKNIQQGSTLS---------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                  NI     L+               K       F   ++NPP+    +   + +
Sbjct: 537 -------NILYADALATHELENPKTDKGNKQKPQINNHSFDLLIANPPYSV--KGFLETL 587

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             + K            + ++    F      +         +AAI+L SS L       
Sbjct: 588 SAKSKKIYTLFTNDINIETNNAIECF---FIERANQLLRDNAKAAIILPSSIL---NKDG 641

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
                R  L  N    AIV L +  F  T   T +  L  ++             +  ++
Sbjct: 642 IYKSTREILFANFDFIAIVELGSQTFGATGTNTIILFLRKKENYTPENTTI----SQDYS 697

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +I+N  +   ++ ++  +  +  + +  +
Sbjct: 698 NIKNYIESGNLLRNETYKNYVKAFNAYCD 726


>gi|330467197|ref|YP_004404940.1| hypothetical protein VAB18032_16170 [Verrucosispora maris
           AB-18-032]
 gi|328810168|gb|AEB44340.1| hypothetical protein VAB18032_16170 [Verrucosispora maris
           AB-18-032]
          Length = 696

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 100/274 (36%), Gaps = 36/274 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E+L  R+ S     +    TP  V  +  AL                   +D T GTG
Sbjct: 167 AFEYLHNRYVSSAHSMSGLAGTPDTVAEVMLALA------------ESGANTFDFTSGTG 214

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-- 275
             L  A +     G+  +       + QE+ P+   + +  + +  L +    D ++   
Sbjct: 215 SILRIAADKALTRGTATR------CYAQEISPQYALITLLRLWLLHLRARRSMDNAEPPV 268

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           ++ G +L  D     R    ++N PFG              +     R+  GLP  ++  
Sbjct: 269 VRVGDSLLADALPDLRADVVVANFPFGIHDWGHD-------RLAYDPRWTYGLPPRTEPE 321

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + ++ H    L       G A ++L  +             +R  L+    + A+VALP 
Sbjct: 322 LAWVQHALAHLAPS----GTAVVLLPPAAASRPAGR----RVRAELIRRGALRAVVALPA 373

Query: 396 DLFFRTNIATYLWILS-NRKTEERRGKVQLINAT 428
            L   T I  ++W+L+     +   G + +++ T
Sbjct: 374 GLMPPTAIGLHIWVLTQPDPDQPPPGDILVVDTT 407


>gi|194246429|ref|YP_002004068.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|194246857|ref|YP_002004498.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|193806786|emb|CAP18213.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|193807216|emb|CAP18659.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
          Length = 785

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 125/385 (32%), Gaps = 67/385 (17%)

Query: 92  GSTNTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG-IELHPD 148
               +++ +++ +  +S   N K +   F             LL  +  + +  I  +  
Sbjct: 232 DKQISKDKIQTIVTEYSKYKNNKQLTSPFIKDKKTKTNIPNNLLRNLIDDVNDNILPYIR 291

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++   Y   I+   +   +     +TP  +      L+                 
Sbjct: 292 DNKFDILGKFYTQFIKY--AGGDKKTGLVLTPIHITEFFCDLINI----------QPNDI 339

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRRL 264
           ++DP CGTGGFL  AM  +     + K            G E+ P+  +   + M++R  
Sbjct: 340 VFDPCCGTGGFLVSAMKAMVQNVKYEKNKQAEIKLNQLIGIEIRPDMFSHVCSNMMMRG- 398

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                 D   NI  G+    +L      K+ +    NPP+     ++             
Sbjct: 399 ------DGKSNIFHGNCFDDELIKIVKKKKPNISFLNPPYSNGNAEE------------- 439

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                         + F+ +  N L     GG   AI   S+ L        E      L
Sbjct: 440 -------------QLEFIENSLNCL---TKGGECVAICQMSTALNTKGLTIKE-----RL 478

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL-INATDLWTSIRNEGK- 439
            +   ++A++++P DLF+   +AT + I       +            D +   + +G+ 
Sbjct: 479 FQKHTLKAVLSMPEDLFYPVGVATVILIWEAHIPHDSNINTFFGYFKNDGFVKTKYKGRI 538

Query: 440 -KRRIINDDQRRQILDIYVSRENGK 463
                    +   ++  Y ++++ +
Sbjct: 539 DINNKWPSIKNEWLI-TYKNKQDKE 562


>gi|25026603|ref|NP_736657.1| hypothetical protein CE0047 [Corynebacterium efficiens YS-314]
 gi|259508264|ref|ZP_05751164.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|23491882|dbj|BAC16857.1| hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164152|gb|EEW48706.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 604

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 115/392 (29%), Gaps = 75/392 (19%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                 ++ TP+ +  L   L+           P   +T+ D  CG GG L         
Sbjct: 146 SGRDGGEYSTPKILTDLIADLI-----------PTEPKTVLDFACGAGGTLQAI------ 188

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
               H   P     G ++     A   A    R +  +     +        +       
Sbjct: 189 ----HHRFPEATLQGNDINATALATAQA----RAIPGNWTATWT----HRDIIEAGALPA 236

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F    SNPPFG        AV KE    +  R+  G+P  +D    +L    + L   
Sbjct: 237 DSFDLVCSNPPFGL-------AVNKECLEEQPDRWPYGVPSRND-DSKWLQLAHHALTDS 288

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRW------LLENDLIEAIVALPTDLFFRTNI 403
               G A I + +S L            RR       ++ +  + A++ALP +LF  T I
Sbjct: 289 ----GLAIINVFNSALH----------ARRHGSALPAMVADGSLLAVIALPDNLFSNTAI 334

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            + L + +    +     V      D  +  ++ GK    ++      +++ Y +   G+
Sbjct: 335 PSALVVFTKN-PDNVSDTVLFA-TVDAASRHKSLGK----VSALDTDDLVEAYTAHMAGE 388

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
               L           V  P       D T L                Q+     +  + 
Sbjct: 389 RIPALATA--------VQVPRLELIGADATLLPTYWVAKAHPPQVDDLQATITAAVNAIE 440

Query: 524 QQIYPYGWAESF----VKESIKSNEAKTLKVK 551
                    +       K +      K   +K
Sbjct: 441 PIAAVGQELDELMLSREKIARTIPAIKLPGIK 472


>gi|260642159|ref|ZP_05859273.1| putative type I restriction-modification system, M subunit
           [Bacteroides finegoldii DSM 17565]
 gi|260623398|gb|EEX46269.1| putative type I restriction-modification system, M subunit
           [Bacteroides finegoldii DSM 17565]
          Length = 368

 Score = 94.3 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 100/318 (31%), Gaps = 96/318 (30%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              YE ++    + + + A  F TPR+++     +L           P     + DP CG
Sbjct: 3   GTAYETIV---SNTLKQEAGQFFTPRNIIKCMVEML----------DPDQNTRVLDPACG 49

Query: 216 TGGFLTDAMNHVA-----------------------DCGSHHKIPPILVPHGQELEPETH 252
           +GGFL   ++HV                        +     +     +  G + +P+  
Sbjct: 50  SGGFLVTVLDHVRHKITRNLYPELDEVRLAARVNTPEVDELVRNYAEKMIFGFDFDPDLK 109

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL------------------FTGK---- 290
                 M++         D   NI   ++L                       +      
Sbjct: 110 KAARMNMVMAG-------DGHSNIFNINSLDYPQGDKPDRSLIAEAVNESIKHSNDKDFP 162

Query: 291 ----------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                     +F    +NPPFG K E D +   +   N                 +LF+ 
Sbjct: 163 FGTSEDNAQGKFDMIFTNPPFGAKVEVDVEIARRYKLNSNAP------------EILFIE 210

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              N L+     GG+  IVL    L N    S    +R+W+L +  + A V LP + F  
Sbjct: 211 ACYNFLKP----GGKMGIVLPDGILGNPNTES----VRKWILGHFKLLASVDLPVETFLP 262

Query: 401 -TNIATYLWILSNRKTEE 417
              +   L  L  +  EE
Sbjct: 263 QVGVQASLLFLQKKTAEE 280


>gi|302557220|ref|ZP_07309562.1| type I restriction system adenine methylase [Streptomyces
           griseoflavus Tu4000]
 gi|302474838|gb|EFL37931.1| type I restriction system adenine methylase [Streptomyces
           griseoflavus Tu4000]
          Length = 563

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 88/275 (32%), Gaps = 43/275 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            ++   L  RF   V     D +T   VV        D               L+DP CG
Sbjct: 139 GDVVNGLAERFTESVRRAGSDQVTSPRVVRAVRHFAGDVAADAV---------LFDPACG 189

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            G  L                      HGQE++  +  +  +        +         
Sbjct: 190 IGTLLLTL-----------GAGQDTRRHGQEVDARSARLAQS-------RAGLGGLTRTE 231

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           I  G +L  D + G +    + +PP         D            R+  G P  ++G 
Sbjct: 232 IAHGDSLRADRWPGLKADLVVCDPPVS-------DTDWGREDLLLDPRWELGTPSRAEGE 284

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + +L H           GGR  +V+ +S  +          IR  L+   ++  + ALP 
Sbjct: 285 LAWLQHAYAHTAP----GGRVVMVMPASVAYRKAGR----RIRAELVRRGILTQVTALPP 336

Query: 396 DLFFRTNIATYLWILSNRK-TEERRGKVQLINATD 429
                 ++  +LW L   +  ++    V++++ T 
Sbjct: 337 GTAAAHSLPVHLWHLRRPRTPDDAATTVRMVDLTS 371


>gi|109948199|ref|YP_665427.1| type II restriction modification enzyme methyltransferase
           [Helicobacter acinonychis str. Sheeba]
 gi|109715420|emb|CAK00428.1| type II restriction modification enzyme methyltransferase
           [Helicobacter acinonychis str. Sheeba]
          Length = 679

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 115/351 (32%), Gaps = 72/351 (20%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           LY+       I    +T    +M  +Y   + ++     +     +TP  V  + + LL 
Sbjct: 321 LYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240
               +           + D   G+ GFL  +M  + +                 K     
Sbjct: 378 VNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTKANEKIKAMKTT 427

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSN 298
              G EL  E  ++    M++R        D S  I +G+T       +   + +  L N
Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETKKKIYEDFKPNILLLN 480

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  +                               M F+      ++     GG  AI
Sbjct: 481 PPFSHEENG----------------------------MPFIKFGLEHMQK----GGLGAI 508

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++  S    G   + +S +   +L+   + A + +PTDLF     + T ++I    +  +
Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHTLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHD 563

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               V+ I+  +        G         +  +I+ IY +  N K S+ L
Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKAGLNAKVSKEL 614


>gi|322376403|ref|ZP_08050896.1| type II restriction modification enzyme methyltransferase
           [Streptococcus sp. M334]
 gi|321282210|gb|EFX59217.1| type II restriction modification enzyme methyltransferase
           [Streptococcus sp. M334]
          Length = 675

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 120/347 (34%), Gaps = 74/347 (21%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             F  I+     +   +M  +Y   + ++     +     +TP  V  +   +L    ++
Sbjct: 324 NIFKSIDGFGGHID--IMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQILGITSES 380

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQ 245
                      + D   G+ GFL  AM  + D                          G 
Sbjct: 381 ----------KVMDLATGSAGFLISAMELMIDHANASFGKGTSRANEEIANLKKDNLLGI 430

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGK 303
           EL  E + +    M++R        D S  I++GS  ++    F   + +  L NPPF  
Sbjct: 431 ELNAEMYTLATTNMILRG-------DGSSRIEKGSAFNRPESLFMDFKANRVLLNPPFSY 483

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +                      GLP        F+ +  +K+      GG  AI++  S
Sbjct: 484 EEN--------------------GLP--------FIAYGLDKM----ECGGLGAIIIQDS 511

Query: 364 PLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGK 421
                 AGSG++ +  + +L+   + A + +P DLF     + T ++I    +  +    
Sbjct: 512 ------AGSGKAIKTAQAILKKHTLLASIKMPVDLFIPMAGVQTSIYIFKAHEAHDYDQT 565

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
           V+ I+  +        G         + + ++ IY + +  + S+ L
Sbjct: 566 VKFIDFRNDGFKRAKRGISEVDNPIQRYQDVIKIYKAGKRAEVSKEL 612


>gi|219883431|ref|YP_002478591.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
 gi|219867577|gb|ACL47913.1| N-6 DNA methylase [Cyanothece sp. PCC 7425]
          Length = 668

 Score = 94.3 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 118/379 (31%), Gaps = 87/379 (22%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-------KESPGM 205
            V+  + +  +R       EG   ++TP  V     A+                 E    
Sbjct: 306 DVLGRLLDVFLR--AKFKPEGMGVYLTPAPVKQAMLAIAFHDIKTETPELLTARGEDGKP 363

Query: 206 IRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPP------ILVPHGQELEPE 250
                DPTCG+ GF + AM ++          +  S  +              G +   E
Sbjct: 364 AFRFCDPTCGSYGFGSVAMGYLERALMDVLGKETSSDIRRDKLFRDMCEYSFVGADNSQE 423

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDK 309
              +    M +           S       +   +      +    +NPPFGK K     
Sbjct: 424 MVTLARVNMALLGAPKAKIFRTS------DSRISEQLKPCSYDLICTNPPFGKLKGPAQN 477

Query: 310 DAVEKEHKNGELGRFGPGL-----------------------PKISDGSM--LFLMHLAN 344
           DAV +  ++    R   G                        P  S   +  LF+     
Sbjct: 478 DAVLEYFQSDLKERKKKGTFDYEPSVDGLALGGKPDNKGIWKPASSGIDLAILFIDRCLQ 537

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END-----------LIEAIVA 392
            L+     GGR  IVL    L      SG+  +R +++ + D           +++A+++
Sbjct: 538 LLKP----GGRLLIVLPDGVL----CNSGDRYVREYIMGQKDAVTGQFHGGKAIVKAVIS 589

Query: 393 LPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATDLWTSIRNEGKKR 441
           LP+D F    T   T +  L  RK          +E +  V +  A  L   ++N  +  
Sbjct: 590 LPSDTFKLSGTGAKTSILYLQKRKANPETPKHFLDEPQKDVFMAVADALGYVVKNNVEDY 649

Query: 442 RIINDDQRRQILDIYVSRE 460
                +    I+  YV  E
Sbjct: 650 STGVLNDLVPIVGAYVRGE 668


>gi|225619348|ref|YP_002720574.1| type II restriction-modification enzyme [Brachyspira hyodysenteriae
           WA1]
 gi|225214167|gb|ACN82901.1| type II restriction-modification enzyme [Brachyspira hyodysenteriae
           WA1]
          Length = 793

 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 90/591 (15%), Positives = 182/591 (30%), Gaps = 97/591 (16%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           + ++++     G   D + F    G +F   S+  L    +   R  L+  +    +N  
Sbjct: 242 AKIQDESEKKKGEKYDFQIFSYKDGNTF--ESDEELFNRINELYRRALKQRLNINDEN-- 297

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            + + F        L K        + FS ++         ++ + +E +IR       +
Sbjct: 298 KLKKSFVVDENKFSLNKLKYTVSEIERFSFVDGKNSFTGKDILGDFFEGIIR---EGFKQ 354

Query: 173 GAEDFMTPRDVVHLA-TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
               F T  ++V      L +D        +   I  + DP+ G+G FL + M  + +  
Sbjct: 355 TKGQFFTHINIVKFMLWGLQIDKLAIDRINNDLEIPYMIDPSAGSGTFLIEYMKFITENI 414

Query: 232 SH-------------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
                                               +G E            M++    S
Sbjct: 415 KRRFFDELDKSRDVEDKFAQWFQPDHRENKWAKDFIYGIETNFNLGTATKVNMILHGDGS 474

Query: 267 DPRRDLSKNI----------------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
                    +                    ++  D     +F   L+NPPF    + D  
Sbjct: 475 SNIFVKDGLLPFNFYSKEQSPNYLKQYDKDSIYNDKNVNGQFDCILTNPPFSVTLDNDTK 534

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              K+                 +   LF+      L+      GR A VL  S       
Sbjct: 535 NNLKDGFLFGD---------KKNSENLFIERWYQLLK----NNGRFAAVLPESVFDTTEN 581

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR-KTEERRGKVQLINAT 428
                 IR ++ +   I+A+++LP   F   T+  T +     + K E  +        +
Sbjct: 582 ----KYIRIFIYKYFKIKAVISLPQLTFEPFTSTKTSILFAQKKTKEELEQWNEVWKKYS 637

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
           D W+ ++                I+D+Y++ ++      ++       ++       + +
Sbjct: 638 DEWSKLKTRA-----------ENIIDVYINGKSEAKLTSIN-------KLSEEERKDILY 679

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF---------VKES 539
            L K  +   +  ++  +L+  ++    +I K        +G+  S          +  S
Sbjct: 680 RLLKNYIEEYDKSLSILELTKKYEYELKEICKYDNDTKDIFGYVNSHWVFGELSKGLNYS 739

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPRAD-PVTDVNGEWIPDTNLTE 589
           I   EA+ +  K +K       N   R + + +  V D   E I D  L +
Sbjct: 740 ILMAEAENIGYKRTKRGEKIMPNELYRMNNKGEIIVDDNKKETILDY-LRD 789


>gi|114775501|ref|ZP_01451069.1| type I restriction-modification system methylation subunit
           [Mariprofundus ferrooxydans PV-1]
 gi|114553612|gb|EAU55993.1| type I restriction-modification system methylation subunit
           [Mariprofundus ferrooxydans PV-1]
          Length = 193

 Score = 93.9 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 16/183 (8%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           S + L  ++ K A  L G    +DF   I P  L  R+    +       E  +A   S+
Sbjct: 2   SLSQLEQYLSKAAWILKGPVDASDFEVYIFPLLLFNRISDVYDE------EFRIALEESD 55

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGS--TNTRNNLESYIASFSDNAKA----IFEDFDF 120
            D E  +    + F          +    TN    +E  +       +     IF D  +
Sbjct: 56  GDKEYALLPEFHRFEIPEGCHWRDVRETSTNVGQAIEKALRGIEQANQEYLYGIFGDAQW 115

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA--EDFM 178
           S+   +L    LL  + ++FS   L   +V   ++ N YE+LI+ F   V++ A    F+
Sbjct: 116 SNK-NKLSDR-LLVDLVEHFSQYTLGNMSVDPDMLGNAYEYLIKHFADLVNKKATLSFFI 173

Query: 179 TPR 181
           +PR
Sbjct: 174 SPR 176


>gi|170718170|ref|YP_001785196.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826299|gb|ACA31670.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 513

 Score = 93.9 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 108/344 (31%), Gaps = 54/344 (15%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLA 187
           K   L  I K  S I +           +I +    +F   + +     F TP  +    
Sbjct: 154 KNDALLDILKVLSPIRITYSKR------DIIQSFYMKFAKSLYKWDLAQFFTPTPITDFI 207

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             ++          +      ++DP CG+  FL  A          H         G + 
Sbjct: 208 IDVM----------NLKFGEHVFDPACGSADFLVAAFQTARKFNHGH----ADYIWGNDN 253

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
                 V +  M++         D   NI++  +L       K+++  L NPPFG K  +
Sbjct: 254 SDNAVQVAILNMVLNG-------DGKTNIKKIDSLETINDDYKQYNLILCNPPFGSKILE 306

Query: 308 DKDAVEKEHKNGE-----LGRF---GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
            +  V K    G         F      L    +  +LF+     K +      GR AI+
Sbjct: 307 RRTEVLKNFDLGFQWILEKNTFILDKNSLLSQQESGLLFVELCVRKAKKE----GRIAII 362

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTE- 416
           L +  L  G         R WLL +  I  I ALP   F  +   ++  +  L  RK   
Sbjct: 363 LPNGYL--GNHSEKFLIFREWLLRHVKIAGICALPRFSFKSSGADVSASILFLEKRKEPL 420

Query: 417 ----ERRGKVQLINATDL--WTSIRNEGK---KRRIINDDQRRQ 451
                       I + +   W +     K   KR  I+      
Sbjct: 421 KSSLNSEDYSFFIESIENLGWEAGNKIAKPVYKRNPIDGSFISD 464


>gi|326777761|ref|ZP_08237026.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658094|gb|EGE42940.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 552

 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 85/271 (31%), Gaps = 43/271 (15%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L+ RF         D +T   +V   +                    + DP CG G  
Sbjct: 129 EQLVERFRDSSRRVGSDQVTSLRLVKAVSHFAGP---------VPAGSVVLDPACGIGTL 179

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                   LV  GQ+++P    +           ++        I+ G
Sbjct: 180 LLSV-----------GPTEGLVRRGQDIDPAAAGLAG-------ARAELAGQQDTVIETG 221

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            +L  D +   R    L +PP                +     R+  G P  ++G + +L
Sbjct: 222 DSLRHDHWPDLRADLVLCDPPTA-------GPDWGREELLLDSRWELGTPSKAEGDLAWL 274

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H           GGR   V+ +S  +          IR  ++   ++  +VALP  +  
Sbjct: 275 QHCYAHTAP----GGRVVAVMPASVAYRKAGR----RIRAEMVRRGILTEVVALPPGMVA 326

Query: 400 RTNIATYLWILSNRKTEERRGK-VQLINATD 429
                 +LWIL          + V++++ T 
Sbjct: 327 SHAQPVHLWILRRPADASGGSESVRMVDLTS 357


>gi|305431923|ref|ZP_07401090.1| type II restriction-modification enzyme [Campylobacter coli JV20]
 gi|304445007|gb|EFM37653.1| type II restriction-modification enzyme [Campylobacter coli JV20]
          Length = 737

 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 144/447 (32%), Gaps = 34/447 (7%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L+ A +L +I + F+  +L      ++ + N++E  +++   +       F TP  +   
Sbjct: 8   LKNALVLKEIVELFANYKLT-QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEF 63

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQ 245
               L  P   +  +S   +R + D  CG G FL    N +    +  ++       +G 
Sbjct: 64  IMYSL--PLQEMLSKSSKALR-VIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGI 120

Query: 246 ELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL------SKDLFTGKRFHYCLS 297
           E E     V      M  +   +    D   + +  +T       +K       F   ++
Sbjct: 121 EKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGEKAKPQIESNSFDLLIA 180

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+    +   + +  + KN           + ++    F      +     N   +AA
Sbjct: 181 NPPYSV--KGFLETLSDKSKNTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAA 235

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           I+L SS L      S     R  L +N    AIV L    F  T   T +  L  ++T +
Sbjct: 236 IILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFK 292

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYR 476
           +   +   + + +   I  E  K               +   +   +S  L+        
Sbjct: 293 QENHLISQDYSLIKERIETENLKDNENFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLA 352

Query: 477 RIKVLRPLRMSFILDKT--GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            ++  +  R +F        L   +     +    L    +L   + + +    Y     
Sbjct: 353 ELEAFKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLY----- 407

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFI 561
                  + E   +K  +       F+
Sbjct: 408 --FSLSLNQEVLIIKSPSDIKEQKKFL 432


>gi|88860311|ref|ZP_01134949.1| putative type I restriction-modification system, methyltransferase
           subunit [Pseudoalteromonas tunicata D2]
 gi|88817509|gb|EAR27326.1| putative type I restriction-modification system, methyltransferase
           subunit [Pseudoalteromonas tunicata D2]
          Length = 428

 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 139/378 (36%), Gaps = 50/378 (13%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
              + +  I +  D  + I +  +    I  +    LL +  + F+ I+          +
Sbjct: 2   INEDYKKAIWNLVDTGRGITDPRNTLDIITTVATCALLNQ--ERFTHIKNMGANAIIPAL 59

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           + +   L +++ +      E  + P  V+      +    + L   +P +   L D    
Sbjct: 60  NEVILELRKKYKTAFEHCTEINILPESVITRIVYSIAS-FEDLSAFAPAIRELLIDHAGK 118

Query: 216 TGGFLTDA--MNHVADCGSHHKIP----------------PILVPHGQELEPETHAVCVA 257
            G F + A     +                                 QEL  E+ ++   
Sbjct: 119 HGQFGSTAYMEKLITKLVGDASQKTLLDAACGLARTSSLIKTKQTFLQELFLESASLSNR 178

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L+     +        I  G++LS+  F GK+F   +  PP  +K+E +    E EH 
Sbjct: 179 LLLLEGKNLE--------IFTGNSLSEFKFEGKKFDLVVMEPPLAQKFESNFR-TELEHS 229

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
              +   G  +P  S G  +++    ++L    N  G+A +VL    LF G      + +
Sbjct: 230 PFIITEQGKSIP-TSAGDAIWMQFALHQL----NETGKAYLVLPQGCLFRGGYD---AAV 281

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           R  LL ++L++ IVALP+ +   T I   L +L   K +     ++ I+       IR+ 
Sbjct: 282 REHLLNHELVDYIVALPSGVLNGTGIEPVLLVLDKAKVK--GSPIRFID-------IRDI 332

Query: 438 GKKRR---IINDDQRRQI 452
           G K +    ++     +I
Sbjct: 333 GHKNKFHIELSKSDLEEI 350


>gi|281422289|ref|ZP_06253288.1| putative type I restriction modification DNA specificity domain
           protein [Prevotella copri DSM 18205]
 gi|281403610|gb|EFB34290.1| putative type I restriction modification DNA specificity domain
           protein [Prevotella copri DSM 18205]
          Length = 1297

 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 116/332 (34%), Gaps = 34/332 (10%)

Query: 92  GSTNTRNNLESYIAS---FSDNAKAIFEDFDFSS-TIARLEKAG--LLYKICKNFSGIEL 145
               T+  ++ Y  +   FSDN      DF F S    +L +    +L K+ K    I L
Sbjct: 349 DPDATKKTIKEYFRALKFFSDN------DFSFISVHNEKLFRQNAVVLRKMVKMLQDIRL 402

Query: 146 HPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
             D    ++ + +++E  + R    + +    F TP  +V    + L  P + + +++  
Sbjct: 403 KTDGTKQNQFLGDLFEGFLNR---GIKQSEGQFFTPMPIVRFIVSSL--PLEHIIRDNED 457

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP--ETHAVCVAGMLIR 262
           +   + D  CG G FLT+    + +    ++    L  +   +    + + +      + 
Sbjct: 458 IPWAI-DYACGAGHFLTEYAVRIKEFVEKYRKDIPLEEYYARITGIEKEYRLSK----VS 512

Query: 263 RLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           ++ +        NI     L         ++   ++NPP+        D +  E +    
Sbjct: 513 KVSAFMYGQDDINIVYADALVKHPDVHDGKYEVLVANPPYAVS--GFLDTLTDEQRKHYS 570

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     ++    F      +       GG A I+L  S L         +  R  +
Sbjct: 571 LYNANVNTDKNNVIEAF---FIERAAQLMKTGGVAGIILPVSMLNRNGMH---AHAREII 624

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           L+N  I A+    +  F +T   T    L  +
Sbjct: 625 LKNFDIVALAEFGSGTFGQTGTNTVTMFLRRK 656


>gi|290959827|ref|YP_003491009.1| N-methyltransferase [Streptomyces scabiei 87.22]
 gi|260649353|emb|CBG72468.1| putative N-methyltransferase [Streptomyces scabiei 87.22]
          Length = 677

 Score = 93.5 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 92/277 (33%), Gaps = 46/277 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L+ R            +TP  +  L   L             G  R++ DP CGTG 
Sbjct: 170 FEFLLARHLDANPRQYT--LTPAGLAELMAELA------------GPARSVLDPACGTGA 215

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L                 P    +GQ+   E  A+           +    + +     
Sbjct: 216 LLHAVA-----------ARPGQELYGQDSSRELAALTAL------RLALGSGNAAVRTAA 258

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G +L  D     R    L +PPF ++            +     R+  G P  ++  + +
Sbjct: 259 GDSLRADAHEPLRAEAVLCHPPFNERNWGHD-------ELAYDPRWEYGFPARTESELAW 311

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H   +L      GG A +++  +        SG   IR  LL    + A++ALP    
Sbjct: 312 VQHALARL----QDGGTAVLLMPPAVASR---RSG-RRIRADLLRRGALRAVIALPVGAA 363

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
              NI  +LW+L          ++ L++   L    R
Sbjct: 364 PPYNIPLHLWVLRRPGRASVPPELLLVDTGRLVHEGR 400


>gi|315453300|ref|YP_004073570.1| putative N-6 DNA methylase [Helicobacter felis ATCC 49179]
 gi|315132352|emb|CBY82980.1| putative N-6 DNA methylase [Helicobacter felis ATCC 49179]
          Length = 810

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/344 (18%), Positives = 103/344 (29%), Gaps = 65/344 (18%)

Query: 97  RNNLESYIASFSDNAKAIFEDF--DFSSTIARLE----KAGLLYKICKNFSGIELHPDTV 150
           R +++      S     +F D    +   + + +        L  +      I +     
Sbjct: 216 RASIDESDEEVSGRINGLFADIQQKYDDVLNKQDAITFDGKTLKLVVGKLQNICIT--ET 273

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + +E  I      +      F TP++VV L   ++          +P    T+ 
Sbjct: 274 DRDSVGDAFEVFIGY---SLKGSQGQFFTPKNVVRLMVEIV----------APDKKHTII 320

Query: 211 DPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           DP CG+ GFL +++ ++                      I    G E +     V  A M
Sbjct: 321 DPACGSCGFLVESLKYLWHTLDETIENEISRAEEKMALAIKNIRGIEKDSFLTKVGKAYM 380

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---------RFHYCLSNPPFGKKWEKDKD 310
            I         D    I    +L      G+          F    SNPPFGK       
Sbjct: 381 TILG-------DGKGGIFCEDSLELPKNWGELTKSQIKLENFDISFSNPPFGKDIRVTGK 433

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
               ++             K  + S LFL      L+     GGR AI+L  +       
Sbjct: 434 DKLAQYALNLN-------KKEGNVSTLFLERNLQLLKK----GGRLAIILPETYFHAPST 482

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413
                   R  L    IE ++ +P + F    N    + IL   
Sbjct: 483 RYV-----REFLYKHNIEWLIDIPHNTFRPHNNAKCIILILQKD 521


>gi|208435340|ref|YP_002267006.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori G27]
 gi|208433269|gb|ACI28140.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori G27]
          Length = 679

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 118/351 (33%), Gaps = 72/351 (20%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           LY+       I    +T    +M  +Y   + ++     +     +TP  V  + + LL 
Sbjct: 321 LYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240
               +           + D   G+ GFL  +M  + +                 K     
Sbjct: 378 VNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEKTYGKNTTIANEKIKNAKTT 427

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSN 298
              G EL  E  ++    M++R        D S  I +G+T   SK ++   + +  L N
Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETSKKIYEDFKPNILLLN 480

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            PF  +                               M F+     +++     GG  AI
Sbjct: 481 SPFSYEENG----------------------------MPFIKFGLERMQK----GGLGAI 508

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++  S    G   + +S +   +L+   + A + +PTDLF     + T ++I    +  +
Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHD 563

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               V+ I+  +        G         +  +I+ IY +  N K S+ L
Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSKEL 614


>gi|218437966|ref|YP_002376295.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218170694|gb|ACK69427.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 911

 Score = 93.1 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 138/431 (32%), Gaps = 94/431 (21%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESY---IASFSDNAK---AIFEDFDF-----------SS 122
           FY+     L+ +   + + + + Y   I ++ DN +    +FE  +             S
Sbjct: 229 FYSLVNIILAKIQDESEKEDGQEYGFQIYAYGDNIESSDKVFERINLLYRRALSEKLNIS 288

Query: 123 TIARLEK-----------AGLLYKI--CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
              RLEK             L+Y I   +N+S IE         ++ + +E +IR     
Sbjct: 289 DQKRLEKSYVINEDKFPLNKLIYTIQSLENYSFIEGRSSLDGRDILGDFFEQIIR---DG 345

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVA 228
             +    F TP  +V      L     A+   +    +  + DP CG+G FL +AM  + 
Sbjct: 346 FKQTKGQFFTPTSIVKFVLYALQIDQLAIECLNQKLELPFICDPACGSGTFLIEAMKIIT 405

Query: 229 DCGSHHKIPPILV-------------------------PHGQELEPETHAVCVAGMLIRR 263
               + +   +                            +G E+  +        M++  
Sbjct: 406 KEIKYKQKDKVKTSRQVKDRFDDFFQPDHKENRWAERFLYGIEINFDLGTASKVNMILHG 465

Query: 264 LESDPRRDLSK----------------NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
             +     +                   I +  +L       + F   +SNPPF    + 
Sbjct: 466 DGASNIFVMDGLLPFRFYTKDKVTSTLQIYKNDSLYFQKEVNEEFDIVISNPPFSVDLDN 525

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                           F  G  K S    LF+      L+      GR  +VL  S    
Sbjct: 526 QTKNYLNRI-------FLYGTKKNSKN--LFIERWYQILKDR----GRLGVVLPESVFDT 572

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR-KTEERRGKVQLI 425
                    IR +L +   ++A+V+LP   F   T+  T L     + KTE  +      
Sbjct: 573 TEN----KYIRLFLFKYFNVKAVVSLPQITFEPYTSTKTSLLFAQKKTKTEIEQWTKLWE 628

Query: 426 NATDLWTSIRN 436
                W++++N
Sbjct: 629 QYGKEWSTLKN 639


>gi|308064231|gb|ADO06118.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Sat464]
          Length = 679

 Score = 93.1 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   + +S +   +L+   + A + +PTDLF 
Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N + S+ L
Sbjct: 605 GLNAEVSKEL 614


>gi|34557787|ref|NP_907602.1| Type I restriction enzyme modification subunit [Wolinella
           succinogenes DSM 1740]
 gi|34483504|emb|CAE10502.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Wolinella
           succinogenes]
          Length = 560

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 103/301 (34%), Gaps = 58/301 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP++V  L  +LL                 +Y+P  G G                   
Sbjct: 114 YSTPQEVNELIISLLDIAPKDE----------VYNPCYGMGTLFLSLSKR---------- 153

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----F 292
              +   G+EL+     +         L +        ++     L K +F  ++    F
Sbjct: 154 SKTIRLFGEELDGRLAKIAK-------LMARVGGIQEMHLFVNDILKKPVFKNEKGFRQF 206

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPPN 351
              + NPPF      +              RF   G+   S   ++FL H    L+    
Sbjct: 207 DKIVCNPPFSAHLGIEY--------LKNDERFSRYGILAKSSPELVFLTHALMHLKQ--- 255

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              R   ++ +  L        E ++R  ++E+ +IEAI+ LP ++F   +    + +L 
Sbjct: 256 ---RGVFIVRNQTLQKSFL---EEKLRERMVEDRVIEAIIELPKNIFPHQSHDFSILVL- 308

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                     +  I+AT      + +GK  R+I      +IL +Y  +   ++S++    
Sbjct: 309 ----AAHSDSILHIDATSE-RFWQKDGKYNRLIG---IEEILALYRQKRESEYSKLTPIE 360

Query: 472 T 472
            
Sbjct: 361 E 361


>gi|194466428|ref|ZP_03072415.1| N-6 DNA methylase [Lactobacillus reuteri 100-23]
 gi|194453464|gb|EDX42361.1| N-6 DNA methylase [Lactobacillus reuteri 100-23]
          Length = 328

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 101/288 (35%), Gaps = 47/288 (16%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               +SNPP+  KW+    A  +E       RF  G+P  S+ +  F++   +K +    
Sbjct: 1   MATTISNPPYNMKWQHPFFAQSQE-------RFMLGVPPQSNANYAFILTALSKQDK--- 50

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
               A  +L +  L        E  I++ L+E + +EA++ LP  +F  T+I T L I +
Sbjct: 51  ----AVFLLPNGVLTTNNKE--EQAIKKSLIEKNYLEAVITLPEKMFESTSIPTSLLIFN 104

Query: 412 NRKTEERRGKVQLINATDLWTSI---------------RNEGKKRRIINDDQRRQILDIY 456
             K   +   + +INA  L                   R   KK  ++ ++  ++I    
Sbjct: 105 KEK---KTSNILMINADSLAKEEIREQRGQVGSKSHTSRVYKKKINVLPNEAIKKI---- 157

Query: 457 VSRENGKFSRMLDYRTFGYRRIK-VLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSF 514
            S  +            G  ++  +       ++L     +   + DI    L  L +  
Sbjct: 158 ESFLDK------PGDEQGVSKVVPIETIKEQDYVLTPNRYIEMKQEDIQHSSLEKLSEEL 211

Query: 515 WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
                +    ++       +     +   +      K SK    AF +
Sbjct: 212 NRVSAEKGAVKLTINRKM-ANDLGLLPLIKLLQESAKTSKELNDAFKD 258


>gi|134103044|ref|YP_001108705.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291005198|ref|ZP_06563171.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133915667|emb|CAM05780.1| putative type I restriction system adenine methylase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 594

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 90/273 (32%), Gaps = 59/273 (21%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L  R+    S       TP  V  L   L             G   T+ DP CG G 
Sbjct: 131 FEFLCDRYREAHSRRL--VTTPDAVASLMVRLC------------GAEGTVLDPACGLGT 176

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A              P     GQE++    A+  A +L+R  +++        +  
Sbjct: 177 LLLAA--------------PASRALGQEVDVPHAAISAARLLLRGTDAE--------VVA 214

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
             +L +D F G      L +PPF ++            +     R+  G+P   +  + +
Sbjct: 215 ADSLREDGFRGSTADAVLCDPPFNERSWGH-------GELTGDPRWEFGVPPRGEPELAW 267

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           + H           GG  AI++  +             IR  LL    + AIV LP    
Sbjct: 268 VQHCLAHARP----GGSVAILMPPAAASRRPG----KRIRGNLLRAGALRAIVTLPAG-- 317

Query: 399 FRTNIATYLWILSNRKT-EERRGKVQLINATDL 430
                   LW+L      +     + L+ A DL
Sbjct: 318 -----GNDLWLLRRPAPGDRPPSHLLLLEADDL 345


>gi|308535359|ref|YP_002140040.2| type I restriction/modification system N-6 DNA methyltransferase
           [Geobacter bemidjiensis Bem]
 gi|308052704|gb|ACH40244.2| LOW QUALITY PROTEIN: type I restriction/modification system N-6 DNA
           methyltransferase [Geobacter bemidjiensis Bem]
          Length = 1221

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 131/421 (31%), Gaps = 84/421 (19%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           R L   +      V           +    F K+       +  +      +TNT + L 
Sbjct: 201 RSLRDLILDMEDEVLANAGVDVFEEVFKLIFTKLYDELTVYSGRHKYLRFRNTNTASELR 260

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN----FSGIELHPDTVPD-RVMS 156
             I +  + A   +E   F            L     +       +E +     +  V+ 
Sbjct: 261 DRIQALFEEACDRWEGV-FPP-------GDRLRLTADHLQVCIGSLEKYKLFNSNLDVID 312

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             +E+L+ +           + TPR V+ +   +L          +P +  ++ D  CG+
Sbjct: 313 EAFEYLVSK---SSKGEKGQYFTPRWVIDMCVKML----------NPQVDESMIDTACGS 359

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE---------THAV---CVAGMLIRRL 264
            GF   A+  V       +          E +PE           A+     +  + R L
Sbjct: 360 AGFTMHAIFKVWRDILDREGLAASHLFTMERKPEACYDYVREKVFAIDFDEKSVRVARCL 419

Query: 265 ESDPRRDLSKNIQQGSTL-------------SKDLFTGKR-------------------F 292
                 D   N+   +TL               D +                       F
Sbjct: 420 NL-IAGDGQTNVMHLNTLDWKKWDETVKEENWNDTYNQGWKKLRKLLIDPKGKDYRAFGF 478

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              ++NPPF    ++       E  + E G+    + +     +LF+    + L      
Sbjct: 479 DLLMANPPFAGDIKQSDMLSLYEMGHKENGKAESKVGR----DLLFIERNLDFLRP---- 530

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILS 411
           GGR AIVL      N    +G+  IRR++ E+  I A+V L  + F   T I T +  + 
Sbjct: 531 GGRMAIVLPQGRFNN----AGDKRIRRYIAEHCRILAVVGLHPNTFKPHTGIKTSVLFVQ 586

Query: 412 N 412
            
Sbjct: 587 K 587


>gi|271963120|ref|YP_003337316.1| type I restriction-modification system methyltransferase
           subunit-like protein [Streptosporangium roseum DSM
           43021]
 gi|270506295|gb|ACZ84573.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Streptosporangium roseum DSM
           43021]
          Length = 636

 Score = 92.7 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 89/273 (32%), Gaps = 55/273 (20%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           + +E L  R+    S          DV  L + L                 T+ DP CG 
Sbjct: 152 DTFEFLCERYVEAHSRQLSVTRD--DVAALMSRLTGPDRG-------RGKGTVLDPACGV 202

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A   +                GQE+      +    +L+R          +  +
Sbjct: 203 GTLLLHADASL----------------GQEINETNALLTAVRVLLRG--------ATGRV 238

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             G +L +D   G+     + +PPF ++    +       +     R+  GLP   +  +
Sbjct: 239 VAGDSLREDGLAGELADAVVCDPPFNERAWGYE-------ELTGDPRWEYGLPPRGESEL 291

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H    +      GG  AI++ ++             IR  LL    + A+V L   
Sbjct: 292 AWVQHCLAHVRP----GGLVAILMPAAAASRRPG----KRIRGNLLRTGALRAVVMLGPG 343

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
                     LWIL          ++ +++AT+
Sbjct: 344 -------GPDLWILRRPDGGRPPSQLLMVDATE 369


>gi|227892026|ref|ZP_04009831.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
 gi|227866136|gb|EEJ73557.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus salivarius ATCC 11741]
          Length = 753

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/487 (15%), Positives = 148/487 (30%), Gaps = 70/487 (14%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIA-RLEK-AGLLYKICKNFSGIELHPDTVP 151
                 L+S + + S     I + F F   +   L +   +L +I +         +   
Sbjct: 222 KAINIQLKSRVNNLSKKFSWI-DQFSFIKNLELNLSEYKDILSEIHQKI--YIPFQNEEK 278

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             V+   Y+  + R G   ++     +TP  +  L   L     D +          + D
Sbjct: 279 QDVLGRAYKIFLSRSGKIDNKN--IILTPDHIKSLMVKLARLNLDDV----------VLD 326

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIP----PILVPHGQELEPETHAVCVAGMLIRRLESD 267
              GTGGFL +AM  + +     +            G EL+    A+  + M +      
Sbjct: 327 TCTGTGGFLMEAMEKLNNLAKDDENELEKIREHKLIGFELDSTLFALSCSNMFLHG---- 382

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              D   N+    +L K   T K+  +            +    + K  K  +  +    
Sbjct: 383 ---DGRSNMLYRDSLLK---TNKKQKFI----------NQKDADLYKWIKKQKPTKCIIN 426

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P   +  + F     + LE      G+  I++ S  L   + G   + + + LL++  +
Sbjct: 427 PPYEKNKPIKFAQQAIDYLEP----NGKLIIIMPSPTLTKNQIGKESTSLTKKLLKSARL 482

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDLW---TSIRNEGKKRRI 443
           + ++ +P  +F          I    K   E+  +V   N  +        +    K   
Sbjct: 483 DYVIKMPLQIFSEQGRTVNTSIFGFTKTPHEKDDEVLFYNLKEDGLISVQHKGRIDKYNK 542

Query: 444 INDD------------QRRQILDIYVSRENGK-FSRMLDYRTFGYRRI------KVLRPL 484
            ND             +  +I       ++G+      +    G+  I       + +  
Sbjct: 543 WNDYENQILSAVKNSKEIDRISKKKRIFKDGEVNCAGFEVNENGHNMIKIKDLFTIEKGT 602

Query: 485 RMSFILDKTG-LARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKESIKS 542
             S   +  G    + A   W+K     Q     +        +    + +     S   
Sbjct: 603 LASTNANPDGQYNFVTASSEWKKSDYYDQIGPALVYATKASGSLGKSQYIDGNFVASNLC 662

Query: 543 NEAKTLK 549
           N  K  K
Sbjct: 663 NVLKPRK 669


>gi|308062736|gb|ADO04624.1| type II restriction modification enzyme methyltransferase
           [Helicobacter pylori Cuz20]
          Length = 679

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTKANEEIKNAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   + +S +   +L+   + A V +PTDLF 
Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASVKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSDPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N + S+ L
Sbjct: 605 GLNAEVSKEL 614


>gi|296395125|ref|YP_003660009.1| N-6 DNA methylase [Segniliparus rotundus DSM 44985]
 gi|296182272|gb|ADG99178.1| N-6 DNA methylase [Segniliparus rotundus DSM 44985]
          Length = 819

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 103/392 (26%), Gaps = 129/392 (32%)

Query: 116 EDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           E FDF+  +  +  A    L +  + F+          D +    +E  + R        
Sbjct: 264 ELFDFTDVLD-ISDATFRALVQRLQRFN-----LSKTGDDIKGIAFERFLGR---TFRGE 314

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL------------- 220
              F TPR VV      L           P     + DP  G+GGFL             
Sbjct: 315 LGQFFTPRPVVDFMIEAL----------DPQEGELICDPAAGSGGFLIRAFDHVRSSIAS 364

Query: 221 -----------TDAMNHVADCGSHHKIPPILVP--------------------------- 242
                      T    +                                           
Sbjct: 365 DIERQKNDAYATITAEYAQSSTEEQLEQRDRQIDAAFAKLNEELSPTDSTGAPARTRVGL 424

Query: 243 ------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYC 295
                 +G + EP         M++         D    I     L   +     RFH  
Sbjct: 425 LSWDCIYGTDKEPRAARTAKMNMIMHG-------DGHGGIHWHDGLVNINGIFPGRFHVV 477

Query: 296 LSNPPFGKKWEKDKD---------AVEKEHKNGELGRFGP-------------GLP---- 329
           ++NPPFG      +            +  +   +  R+G              G P    
Sbjct: 478 VTNPPFGASVTSAQRIGATTESDVPNDPAYARRQFKRYGDDWKISHDAVVNARGTPILDQ 537

Query: 330 -------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                         LF+    N L+     GGR AIVL +  L           +RRW+ 
Sbjct: 538 FEIGRGKNSRQTETLFVERCLNLLKP----GGRLAIVLPNGNLNAMSLDW----LRRWVE 589

Query: 383 ENDLIEAIVALPTDL--FFRTNIATYLWILSN 412
               +  +VALP +   F + +++  +  L  
Sbjct: 590 GKAFLRGVVALPPETFKFSKASVSASIVFLDK 621


>gi|32266933|ref|NP_860965.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
 gi|32262985|gb|AAP78031.1| type I restriction/modification enzyme [Helicobacter hepaticus ATCC
           51449]
          Length = 1164

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 78/535 (14%), Positives = 152/535 (28%), Gaps = 61/535 (11%)

Query: 34  VILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
            IL    L    C +       ++    + G   D          + Y     +L     
Sbjct: 297 YILVDLFL----CKIIDEIQNPQDLQFYYKGIFYDNPFSYCDRLLNLYEKGIETLFKKKV 352

Query: 94  TNTRNNLESYI--------ASFSDNAKAIFED--------FDF---SSTIARLEKAGLLY 134
            N + +   Y+          F ++ + IF+         F+F    +         +L 
Sbjct: 353 VNVQKSEIDYLFESAKRHKGKFKESIEKIFDKQKYFNIKKFNFIEVENEEEFFINFKVLV 412

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +I        +      ++ + +++E  + R    V +    F TP  + +     L   
Sbjct: 413 QITNLIQDFYISESE-NNQFLGDLFEGFLNR---AVHQTEGRFFTPTPITNFIINSL--- 465

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                  +      + D  CG G FLT+ + H                +G E   +   V
Sbjct: 466 ------PTLSNNAKILDFACGAGHFLTEFIAH----------NKNAKLYGIEKNKDLSKV 509

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                +    +S  +      +       KD F  + F   LSNPP+  K       +  
Sbjct: 510 AKTACIFHNPKSKSQIIFQDALDFIKENYKDEFENESFDLILSNPPYSVKG-----FLSN 564

Query: 315 EHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
             K          +   S D +         + +     GG  A+VL  S L  G     
Sbjct: 565 LDKALNTFSLSQSIDSKSYDKNNAIECFFVERAKQFLKEGGIFALVLPVSILQKGGI--- 621

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             + R  LL +     +V L +  F  T   T +      K  +     +L ++     +
Sbjct: 622 YEKTRELLLAHFKFLCLVELNSRTFGSTGTQTIILFAKRVKKYDEDLISRLKDSNFSDEA 681

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
           + ++   +  + D         ++  + G FS+ +     G                + +
Sbjct: 682 LSDDFNDKNFLQDYC------DFMGYDYGSFSKFMREAVLGENLKGSNVFKEYFADYESS 735

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
                +                    K +  + Y   ++E    +  K  EA   
Sbjct: 736 KPKIFKKQKFNESDKKALFEKSSLFEKDLDSKTYKKQYSEFLKSDEYKKAEANLH 790


>gi|288870250|ref|ZP_06409683.1| putative type II restriction-modification enzyme [Clostridium
           hathewayi DSM 13479]
 gi|288867882|gb|EFD00181.1| putative type II restriction-modification enzyme [Clostridium
           hathewayi DSM 13479]
          Length = 889

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 111/325 (34%), Gaps = 52/325 (16%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            A ++ +I +     +   +   +  + N +E L+    + + + A  F TP  +     
Sbjct: 9   NAKIVREIVELLQAYKFRYEQKHEF-LGNFFELLL---NTSMKQEAGQFFTPVPITRFII 64

Query: 189 ALLLDPD---DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--------------DCG 231
           + L   +     +      ++ T+ D  CG+G FLT+ M  +               D  
Sbjct: 65  SSLPLKEFVQGKINSRERNVLPTVMDYACGSGHFLTEYMEQLQHVLDEKLDISHAAPDIR 124

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRR--LESDPRRDLSKNIQQGSTLSK----- 284
                    V          + + +   L++   + +    D   NI   + L+      
Sbjct: 125 KQVSAWQGAVKFAWAK-DSVYGIDLDNRLVKTTKVSAFFNGDGEANIIWANGLANFEKAE 183

Query: 285 ------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                       D     +F   +SNPP+  +  K      +E                S
Sbjct: 184 EYRGLLRQTQHYDRKNNGQFDILISNPPYSVEAFKSTLQYGEETFELYDN----ITDNSS 239

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +   LF+  +   L++    GG A ++L SS L NG   S   + R  + +   ++AIV 
Sbjct: 240 EIECLFVERMKQLLKV----GGWAGVILPSSILSNGGIYS---KAREIIFKYFRVKAIVE 292

Query: 393 LPTDLFFRTNIATYLWILSNRKTEE 417
           L +  F +T   T +  L  R   +
Sbjct: 293 LGSGTFMKTGTNTVVLFLERRSDND 317


>gi|327184404|gb|AEA32849.1| N-6 DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 609

 Score = 92.3 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 39/275 (14%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + DP+ G  G   + +          K  P      QEL             I  
Sbjct: 132 RKDDKVLDPSSGINGAWLELL----------KNNPNQNMTVQELNEIDAEFAYLNTKILG 181

Query: 264 LESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                    +  + QG TLS   +      + F   ++ PP   +  KD     +     
Sbjct: 182 -------ATNCIVYQGDTLSDPKYTQDGNLQLFDKIVTFPPINARISKDAIIENR----- 229

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              RF  G    + G   F+ +  + L    N  G+A IV+S  PLF G   +     R+
Sbjct: 230 -FNRFRYGDITYTKGESAFISNAISSL----NQTGKAVIVVSDGPLFQGGKVAS---FRK 281

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT-DLWTSIRNEG 438
           +L+++DLIE ++ALP+ L    +I     ++ N+   + +G++Q INA  + W      G
Sbjct: 282 FLVDHDLIETVIALPSSL-LSYSIIPINILIINKNKTDSKGQIQFINANQNEWYQTDKHG 340

Query: 439 KKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRT 472
           K  RI++    ++I+++Y SR + +  S +     
Sbjct: 341 K--RILSTLGIQKIVELYHSRASVEGKSAIFANTD 373


>gi|260892718|ref|YP_003238815.1| N-6 DNA methylase [Ammonifex degensii KC4]
 gi|260864859|gb|ACX51965.1| N-6 DNA methylase [Ammonifex degensii KC4]
          Length = 768

 Score = 92.3 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 76/361 (21%), Positives = 122/361 (33%), Gaps = 67/361 (18%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              +      F TPR V+   TAL+    + L          + DP CGTGGFL +A   
Sbjct: 232 AEALRLADGQFFTPRQVIEAGTALVGIRWEDL----------VIDPACGTGGFLIEAFLQ 281

Query: 227 VADC----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           V                   +G + +     +  A M I         D S +I +G ++
Sbjct: 282 VLRHFSGDQREAARWAQQHVYGVDRDAVGVKLAKAVMQIVG-------DGSAHIFRGDSI 334

Query: 283 SK---DLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            +   D             RF   L+NPPFG+     +         G+L R G  + + 
Sbjct: 335 RRHQWDEHYPSLKANLQEGRFDVVLTNPPFGRPLRVAR---------GDLRRAGYTIHRR 385

Query: 332 SDGS--------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            DGS        ++FL      L+     GGR  IVL  +  F+            WL E
Sbjct: 386 PDGSEAESVEIGLVFLDLAHWLLKP----GGRVGIVLPETYFFSTSYHWLFD----WLRE 437

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR--GKVQLINATDLWTSIRNEGKK 440
                A+V +P + F +     T  ++    +  E    G+V  +N          +  +
Sbjct: 438 RFRPLAVVNVPMEAFQQYARAKTNFYVFKKLEAGEDPEGGEVVFLNPRTCGIDPAGKVTE 497

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
              + D      +D ++  E       +  +    RR+ V  P        +  L  LE 
Sbjct: 498 SNELKDH-----VDAFLRGELPDGGSRVSLKEVYARRVLV--PTYYDTRYVRPLLEFLER 550

Query: 501 D 501
           +
Sbjct: 551 E 551


>gi|317181155|dbj|BAJ58941.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32]
          Length = 679

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKNSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMVEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTKANEKIKEAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   + +S +   +L+   + A + +PTDLF 
Sbjct: 494 KLGLEYMQK----GTLGAIIIQDSA---GSGQALKSNV--EILKKHTLLASIKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNEISNPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N K S+ L
Sbjct: 605 GLNAKVSKEL 614


>gi|307704623|ref|ZP_07641525.1| restriction enzyme BgcI alpha subunit [Streptococcus mitis SK597]
 gi|307621825|gb|EFO00860.1| restriction enzyme BgcI alpha subunit [Streptococcus mitis SK597]
          Length = 680

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 115/332 (34%), Gaps = 72/332 (21%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +M  +Y   + ++     +     +TP  V  +   +L    ++           + D 
Sbjct: 342 DIMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQILGITSES----------KVMDL 390

Query: 213 TCGTGGFLTDAMNHVADC------------GSHHKIPPILVPHGQELEPETHAVCVAGML 260
             G+ GFL  AM  + D                          G EL  E + +    M+
Sbjct: 391 ATGSVGFLISAMELMIDHANISFGKGTSRANDEIAKLKKDNLLGIELNAEMYTLATTNMI 450

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +R        D S  I++GS  ++    F   + +  L NPPF  +              
Sbjct: 451 LRG-------DGSSRIEKGSAFNRPESLFMDFKANRVLLNPPFSYEEN------------ 491

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES-EI 377
                   GLP        F+ +  +K+      GG  AI++  S      AGSG++ + 
Sbjct: 492 --------GLP--------FIAYGLDKM----ERGGLGAIIIQDS------AGSGKAIKT 525

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            + +L+   +   + +P DLF     + T ++I    +  +    V+ I+  +       
Sbjct: 526 AQAILKKHTLLTSIKMPVDLFIPMAGVQTSIYIFKAHEAHDYDQTVKFIDFRNDGFKRAK 585

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
            G         + + ++ IY + +  + S+ L
Sbjct: 586 RGISEVDNPIQRYQDVIKIYKAGKRAEVSKEL 617


>gi|217031816|ref|ZP_03437319.1| hypothetical protein HPB128_199g24 [Helicobacter pylori B128]
 gi|298735558|ref|YP_003728079.1| hypothetical protein HPB8_58 [Helicobacter pylori B8]
 gi|216946468|gb|EEC25070.1| hypothetical protein HPB128_199g24 [Helicobacter pylori B128]
 gi|298354743|emb|CBI65615.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 679

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/430 (17%), Positives = 134/430 (31%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLAAGSAGFLISSMVLMIEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTIANEKIKCMKTTQLLGVELNAEMFSLATTNMILR-------DDGSSLIIKGNT 461

Query: 282 L--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              SK ++   + +  L NPPF  +                               M F+
Sbjct: 462 FETSKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   + +S +   +L+   + A V +PTDLF 
Sbjct: 494 KFGLEHMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASVKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKSTKRGLNETSNPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N K S+ L
Sbjct: 605 GLNAKVSKEL 614


>gi|296268835|ref|YP_003651467.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
 gi|296091622|gb|ADG87574.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
          Length = 675

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 50/235 (21%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E L  RF    S      +T  DV  L   L     +           ++ DP CG GG
Sbjct: 158 FEFLCERFIEVHSRRLG--LTRPDVAGLMIRLAAADAE-----------SVLDPACGMGG 204

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A                    GQ++      +    +L+R  +          I  
Sbjct: 205 LLLAAG--------------APRLLGQDVNHTVAQLAAVRLLLRGRD--------ARIVA 242

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           G  L  D F G++    + +PPF ++            +     R+  G+P   +  + +
Sbjct: 243 GDALRGDGFPGEQVDAVVCDPPFNERAWGH-------AELVGDPRWAYGVPPRGESELAW 295

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
           + H    +      GG  AI++ S+           S     LL    + A++ L
Sbjct: 296 VQHCLAHVRP----GGLVAILMPSAAAARRSGRRIRSG----LLRAGALRAVITL 342


>gi|283954614|ref|ZP_06372132.1| LOW QUALITY PROTEIN: hypothetical protein C414_000240125
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283793806|gb|EFC32557.1| LOW QUALITY PROTEIN: hypothetical protein C414_000240125
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 1035

 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/493 (14%), Positives = 142/493 (28%), Gaps = 46/493 (9%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L +   +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 330 DFKQLKTKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFTNYKLT 389

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L               
Sbjct: 390 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIVYSLPLQ---TMLSENSKA 442

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             + D  CG G FL    N +       +        +G E E     V      +    
Sbjct: 443 LKVIDYACGAGHFLNTYANELKRYLKKEELKEYYKNIYGIEKEYRLSKVSKVSSAMYGQN 502

Query: 266 SDPRRDLSKNIQQGSTLS---------------KDLFTGKRFHYCLSNPPFGKKWEKDKD 310
                    NI     L+               K       F   ++NPP+    +   +
Sbjct: 503 EI-------NILYADALASFELANTSNLEGEKAKPQIESNSFDLLIANPPYSV--KGFLE 553

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            +  + KN           + ++    F      +         +AAI+L SS L     
Sbjct: 554 TLSNKSKNTYKLFNDDINIETNNAIECF---FCERANQILKDNAKAAIILPSSIL---NK 607

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            S     R  L +N    AIV L +  F  T   T +  L  ++T ++       + + +
Sbjct: 608 DSIYKNTREILFQNFDFIAIVELGSCTFGATGTNTIILFLRKKETFKQENNFISQDYSLI 667

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRE--NGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
              I +E  K    +++  +  L  Y      + +                +        
Sbjct: 668 LERIESENLKD---SENFSQNYLAAYCDFRKFDKELYENFLNGNLNSNLAVLEAFKDYHN 724

Query: 489 ILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
             ++T   +   +    K S   +S          Q I      +          E   +
Sbjct: 725 AFNQTSDYKKLKESKIYKESEDKKSLEDKAFLAYAQAIEK---DKLLYFCLSLKQEVLII 781

Query: 549 KVKASKSFIVAFI 561
           K  +       F+
Sbjct: 782 KSPSDIKEQKKFL 794


>gi|89256323|ref|YP_513685.1| hypothetical protein FTL_0976 [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314771|ref|YP_763494.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|167010846|ref|ZP_02275777.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367657|ref|ZP_04983678.1| hypothetical protein FTHG_00927 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144154|emb|CAJ79415.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129670|gb|ABI82857.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253468|gb|EBA52562.1| hypothetical protein FTHG_00927 [Francisella tularensis subsp.
           holarctica 257]
          Length = 775

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 132/483 (27%), Gaps = 131/483 (27%)

Query: 42  RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98
           ++L+  LE T     +++        NI   +       +F   S+     +    N   
Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166

Query: 99  NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139
           N    +  F    +N + I               FE          + +     +I ++ 
Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKREFEKDHIFEPNETIRIRESS 226

Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           F  I    +          V    +E  + R           F TPR VV     +L   
Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233
            + L            DP  G+GGFL  A   V D                         
Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENI 333

Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
                                   +        G +  P    V    M++         
Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386

Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318
           D    I     L   +     RF   L+NPPFG    KD   V +E K            
Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446

Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360
                            G+  R      +IS    +LF+    + L+     GGR  IVL
Sbjct: 447 IYGDVYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVL 502

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418
               L +        + R +      I  IV+LP DLF  +   + T L  L     EE+
Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQ 558

Query: 419 RGK 421
           +  
Sbjct: 559 KQD 561


>gi|254369302|ref|ZP_04985314.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157122252|gb|EDO66392.1| type I site-specific deoxyribonuclease [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 776

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 132/483 (27%), Gaps = 131/483 (27%)

Query: 42  RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98
           ++L+  LE T     +++        NI   +       +F   S+     +    N   
Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166

Query: 99  NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139
           N    +  F    +N + I               FE          + +     +I ++ 
Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKREFEKDHIFEPNETIRIRESS 226

Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           F  I    +          V    +E  + R           F TPR VV     +L   
Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233
            + L            DP  G+GGFL  A   V D                         
Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQRKVFGENLENI 333

Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
                                   +        G +  P    V    M++         
Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386

Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318
           D    I     L   +     RF   L+NPPFG    KD   V +E K            
Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446

Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360
                            G+  R      +IS    +LF+    + L+     GGR  IVL
Sbjct: 447 IYGDIYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVL 502

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418
               L +        + R +      I  IV+LP DLF  +   + T L  L     EE+
Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQ 558

Query: 419 RGK 421
           +  
Sbjct: 559 KQD 561


>gi|156502396|ref|YP_001428461.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290952883|ref|ZP_06557504.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313928|ref|ZP_06804493.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156252999|gb|ABU61505.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 775

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 132/483 (27%), Gaps = 131/483 (27%)

Query: 42  RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98
           ++L+  LE T     +++        NI   +       +F   S+     +    N   
Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166

Query: 99  NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139
           N    +  F    +N + I               FE          + +     +I ++ 
Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKREFEKDHIFEPNETIRIRESS 226

Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           F  I    +          V    +E  + R           F TPR VV     +L   
Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233
            + L            DP  G+GGFL  A   V D                         
Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENI 333

Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
                                   +        G +  P    V    M++         
Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386

Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318
           D    I     L   +     RF   L+NPPFG    KD   V +E K            
Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446

Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360
                            G+  R      +IS    +LF+    + L+     GGR  IVL
Sbjct: 447 IYGDVYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVL 502

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418
               L +        + R +      I  IV+LP DLF  +   + T L  L     EE+
Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKKFTVEEQ 558

Query: 419 RGK 421
           +  
Sbjct: 559 KQD 561


>gi|298674140|ref|YP_003725890.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
 gi|298287128|gb|ADI73094.1| N-6 DNA methylase [Methanohalobium evestigatum Z-7303]
          Length = 686

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 131/415 (31%), Gaps = 70/415 (16%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKY--LAFGGSNIDLESFVKVAGYSF--YNTSEYSLST 90
           +      +  +  L        E +               VK    +F   N        
Sbjct: 221 VFKLIFTKLYDETLSQHDKNRIEGFLDNELNDEERANYELVKQTLENFNDRNCRVMEFRN 280

Query: 91  LGSTNTR--NNLESYIASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            G T     N ++S   S  +  + IF +   F  + + L             S  ++  
Sbjct: 281 TGQTEIELYNKIQSLFDSAKEKWRGIFQDSSRFELSSSHLS--------VCISSLQDVKL 332

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V+   +E+L+ +           + TPR V+ +   +L          +P    
Sbjct: 333 FNSNLLVIDEAFEYLVNKSA---KGEKGQYFTPRHVIDMCVKML----------NPKRGE 379

Query: 208 TLYDPTCGTGGFLTDAMNHVADC------GSHHKIPPILVPHGQELEPETHAVCVA-GML 260
            + DP  G+ GF    + H+          S      IL   G + + +T  V     ++
Sbjct: 380 YMIDPAAGSCGFPVHTIFHLTGHLFENTEISDEDQEDILKVFGIDFDEKTVRVARTLNLI 439

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR----------------------FHYCLSN 298
               E++     S + ++ +    +    +                       F   ++N
Sbjct: 440 AGDGETNVLHLNSLDYERWNEYVNNHNWSQTYGSGYNRLEKLRESRNSNKDFDFDVLMAN 499

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF    ++ +   + E      G+    + +     +LF+    + L+     GGR AI
Sbjct: 500 PPFAGDIKESRIIHKYELGFKNNGKAYSKIGR----DILFIERNLDFLKS----GGRMAI 551

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           VL    L N    S +  IR ++ E+  I A+V+L  + F       T +  +  
Sbjct: 552 VLPQGRLNN----SSDERIREFISEHARILAVVSLDQNTFKPHAGTKTSILFVQK 602


>gi|196229254|ref|ZP_03128119.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
 gi|196226486|gb|EDY20991.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
          Length = 683

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 68/452 (15%), Positives = 130/452 (28%), Gaps = 121/452 (26%)

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFS----------GIELHPDTVPDRVMSNIYEHLI 163
           IF+  +    + +      L  + +N                    +    +   ++  +
Sbjct: 248 IFDK-NVHLQLEQQRNYETLLDLIQNLGPVTDNRGVQIKANGTFADMAADALGRAFDVFL 306

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLD------PDDALFKESPGMIRTLYDPTCGTG 217
           R    +   G   ++TP  V      +         P+     +    +    DP CGT 
Sbjct: 307 R-GNFDSKGGLGIYLTPAPVKQSMLDIAFHDILAETPELLAAYKGDKPVFRYCDPACGTY 365

Query: 218 GFLTDAMNHVADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GF   A+  +    +             +        G +  P    +    M +     
Sbjct: 366 GFGVVAVGRLQRALAELNLDDVKRKKLFEDHLTYSFCGADSAPVMVTLARVNMALLGAPK 425

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHK-------- 317
                +       ++L+ D      F    +NPPFG  K++K +    + ++        
Sbjct: 426 ARIFYVQ------NSLTTDQLEPGTFDLICTNPPFGTPKFKKGQHEARERYETEMGEILK 479

Query: 318 -----NGELG----------------------RFGPGL-------------------PKI 331
                    G                      R+ P +                   P  
Sbjct: 480 RFRTDLEPDGDKTAYTFVAGMGWFPIGKKEVYRYTPTVAGKAMGASPDKKGRWTPISPTS 539

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END----- 385
            D ++LF+      L+     GGR  I+L    L      SGE  +R +++ + D     
Sbjct: 540 IDPAVLFIDRCLELLKP----GGRLIIILPDGVL----CNSGERYVREYIMGKKDPVTGE 591

Query: 386 ------LIEAIVALPTDLF--FRTNIATYLWILSNRK---------TEERRGKVQLINAT 428
                 +++A+V+LP+D F    T   T    L  R           +E +  V +  A 
Sbjct: 592 FHGGKAIVKAVVSLPSDTFKLSGTGAKTSYLYLQKRHARPNDPEHFADEPQKDVFMGVAD 651

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            L   ++N  +       +    I   Y+  E
Sbjct: 652 HLGYEVKNNVEDYSKGVPNDLAGITGSYIRGE 683


>gi|217033897|ref|ZP_03439321.1| hypothetical protein HP9810_870g29 [Helicobacter pylori 98-10]
 gi|216943660|gb|EEC23105.1| hypothetical protein HP9810_870g29 [Helicobacter pylori 98-10]
          Length = 339

 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 108/329 (32%), Gaps = 70/329 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M  +Y   + ++     +     +TP  V  + + LL     +           + D   
Sbjct: 1   MGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLGVNAKSF----------VMDLAT 49

Query: 215 GTGGFLTDAMNHVAD------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           G+ GFL  +M  + +                 K        G EL  E  ++    M++R
Sbjct: 50  GSAGFLISSMVLMVEDIEKTYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILR 109

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                   D S  I +G+T   +   +   + +  L NPPF  +                
Sbjct: 110 G-------DGSSLIIKGNTFETNKKIYEDFKPNILLLNPPFSYEENG------------- 149

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M F+      ++     G   AI++  S    G   + +S +   
Sbjct: 150 ---------------MPFIKFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--E 185

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +L+   + A + +PTDLF     + T ++I    +  +    V+ I+  +        G 
Sbjct: 186 ILKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGL 245

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
                   +  +I+ IY +  N K S+ L
Sbjct: 246 NETSNPTKRYEEIIKIYKAGLNAKVSKEL 274


>gi|317179649|dbj|BAJ57437.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30]
          Length = 679

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLKKDSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   + +S +   +L+   + A + +PTDLF 
Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N K S+ L
Sbjct: 605 GLNAKVSKEL 614


>gi|297380673|gb|ADI35560.1| Restriction enzyme BgcI subunit alpha [Helicobacter pylori v225d]
          Length = 679

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 132/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   + +S +   +L+   + A + +PTDLF 
Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PLAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N K S+ L
Sbjct: 605 GLNAKVSKEL 614


>gi|17230181|ref|NP_486729.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
 gi|17131782|dbj|BAB74388.1| type I restriction enzyme, modification chain [Nostoc sp. PCC 7120]
          Length = 145

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 26/164 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +WK+ ++L G    + +   +L    ++ +                   
Sbjct: 1   MAIKKSELYSSLWKSCDELRGGMDASQYKDYVLVLLFVKYVSD----------------K 44

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
            + +         G  F +                 + +   +  ++ K + +  DF++ 
Sbjct: 45  YAGVADVLIEVPEGGGFQDIVALKGQKDIGDGINKIITNLAEA--NDLKGVIDVADFNNA 102

Query: 124 IARLEKA----GLLYKICKNFSGIELHPDTV---PDRVMSNIYE 160
             +L K       L  +   F    L+        D ++ + YE
Sbjct: 103 -DKLGKGKEMQDRLSNLVAIFETPALNFSKNRADGDDILGDAYE 145


>gi|56552830|ref|YP_163669.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56544404|gb|AAV90558.1| N-6 DNA methylase [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 672

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 135/420 (32%), Gaps = 78/420 (18%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY-SLSTLGSTNTRN 98
             R L   +E     V     A      ++   +    Y   N+    S     + NT  
Sbjct: 189 FARSLRDLIEDMEDEVLA--NAGVDVFEEVFKLIFTKLYDEMNSHRLGSALRFRNQNTAA 246

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            L++ I +  D+AK  +          RL    L  ++C   S  E         V+ + 
Sbjct: 247 QLKTAIQNLFDDAKRKWPGVFLDDERIRLSPDHL--QVCVG-SLEEWKLFNSNLDVIDDA 303

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +E+L+ +           + TPR V+ +   ++          +P    T+ D  CG+ G
Sbjct: 304 FEYLVSK---SSKGEKGQYFTPRWVIDMCVKMM----------NPKEGETVIDTACGSAG 350

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV---CVAGMLIRRLES 266
           F   +M HV                  E +P            A+     +  + R L  
Sbjct: 351 FTVHSMFHVWRQIMRAMGREESHLFTMEAKPPRCIDYVRDNVFAIDFDEKSVRVSRCLNL 410

Query: 267 DPRRDLSKNIQQGSTL-------------SKDLFTGKR-------------------FHY 294
               D   N+   +TL              +D +                       F  
Sbjct: 411 -IAGDGETNVLHLNTLDWTKWDETVKQDDWQDTYGDGWRRLRKLRENPRQTDYRSFGFDV 469

Query: 295 CLSNPPFGKKW-EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
            ++NPPF     + D  +      N +  +    + +     +LF+    + L+     G
Sbjct: 470 LMANPPFAGDIRQSDMLSPYDVAHNEKTQKLEKAVAR----DLLFIERNLDFLKP----G 521

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           GR A+VL      N    S +  +R+++++   + A+V L  + F   TN  T +  +  
Sbjct: 522 GRMAVVLPQGRFNN----STDQRVRKFIMDRCRVLAVVGLHPNSFKPHTNTKTSVLFVQK 577


>gi|258423213|ref|ZP_05686105.1| predicted protein [Staphylococcus aureus A9635]
 gi|257846542|gb|EEV70564.1| predicted protein [Staphylococcus aureus A9635]
          Length = 625

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 86/453 (18%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTNTRNNLESYIASFSD 109
           +  V  + L      +  E         F  T +     L     + +  + +      +
Sbjct: 187 KDKVFNEMLKILFIKLMDERNHTSRIADFGITEQEYDEILNHKENDFKVRINNLFNKAKN 246

Query: 110 NAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           N + IF  +   +  ++ L        +       +L        V    ++  +    +
Sbjct: 247 NYQDIFNPNEKINLKLSTLA------FVVGQMQNFDL--SHSSRDVKGLAFQKFV---YA 295

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                  +F TP  ++ LA  ++          +P +  T+ DP CGTGGFL  A+ HV 
Sbjct: 296 HQRGDRGEFFTPDPIIELAVKMI----------NPKIDETILDPACGTGGFLVAALKHVE 345

Query: 229 DCGSHHKIPPI------------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           +     K                    G +  P+   V    M++         D    I
Sbjct: 346 ESIIDLKAERPIDFEKAKTDYALRKLRGIDFNPDLVKVSKMRMIL-------EDDGHTGI 398

Query: 277 QQGSTLS-------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            Q ++L               +          L+NPPFG+K       + ++++ G    
Sbjct: 399 FQANSLDTLREIEIQALKSGANNINENSVDIILTNPPFGRKGTITDKDILRQYELGHQWV 458

Query: 324 FGPGLPKISDG-------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 + S          +LF+      L+      G+ AIVL  S L     G     
Sbjct: 459 KNNDSYENSHKVLDDQVPDILFIERCYQFLKNK----GKMAIVLPDSVL----TGPKLQY 510

Query: 377 IRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRG------KVQLINAT 428
           +R ++L+   +  +V+LP + F     N+   + +L    ++          +  +++  
Sbjct: 511 VRNYILKRFKVVGVVSLPYETFIPHGANVKASILLLQKLDSKTMEELNTDGYESFMVDIE 570

Query: 429 DLWTSIRNEG-------KKRRIINDDQRRQILD 454
            +       G       +K + I D+   +ILD
Sbjct: 571 KIGYQGNKNGTLIYKIDEKGQYILDENGNKILD 603


>gi|260061351|ref|YP_003194431.1| type I restriction-modification system, M subunit [Robiginitalea
           biformata HTCC2501]
 gi|88785483|gb|EAR16652.1| type I restriction-modification system, M subunit [Robiginitalea
           biformata HTCC2501]
          Length = 894

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 130/383 (33%), Gaps = 57/383 (14%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D      R  +   L +  +    +E     +P  + +  +E L+ +    V     + M
Sbjct: 90  DTYRIFERRIENFQLSESKELLKKLEDLYLNLPPALYAKAFETLLEKIVKGVERKRGEIM 149

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
            P ++      +           +    + +++P  G G F     +             
Sbjct: 150 LPSEIAKFLINI----------SNLHGGKRVFNPFAGLGSFGIFLND------------S 187

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  HGQE++  T AV    +      ++   +         +         R+   +SN
Sbjct: 188 TINYHGQEIDDLTWAVTTLRLDAHDKLNNSSFEKV------DSFLS-WPNTNRYDLIISN 240

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPFG +  K +   EK++K  E                L    +    EL  + G   AI
Sbjct: 241 PPFGLRLGKHQQTTEKKYKTVE--------------QFLLTQGI----ELLTDCGKMIAI 282

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           V +         G     +R+ L+E DL+EA+++ P  LF ++N    + ++S  K  ER
Sbjct: 283 VPNGLLYSKSNKG-----VRQRLIEEDLVEAVISFPGGLFLQSNSPFSVIVISKTK--ER 335

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
            G V      +    + N   +  ++ +D  +  L   VS +    SR  D   F    I
Sbjct: 336 PGSVLFFPGENYAQPLNNGHYQ--LMLEDITKDFLRRSVSIQTSDHSRT-DEPPFNQLEI 392

Query: 479 KVLRPLRMSFILDKTGLARLEAD 501
                    + LD       E +
Sbjct: 393 DKDSIKSQDYSLDHERYRFEEIE 415


>gi|302554826|ref|ZP_07307168.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces viridochromogenes DSM 40736]
 gi|302472444|gb|EFL35537.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces viridochromogenes DSM 40736]
          Length = 556

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 90/276 (32%), Gaps = 45/276 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++   L  RF         D +T   VV              F     +  T++DP CG 
Sbjct: 131 DLVNGLTDRFMDSARRAGSDQVTSERVVRAVCH---------FAPELPVGATVFDPACGI 181

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L                       GQE++ ++            L ++       ++
Sbjct: 182 GVLLLSVA-----------SESGARCRGQEMDTDSARFAQ-------LRAELLGRSEVSV 223

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
             G +L  D +   R    + +PP G              +     R+  G P  ++G +
Sbjct: 224 VAGDSLRADAWPDLRADLIVCDPPAGVTEWG-------REQLLLDSRWELGTPSKAEGEL 276

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            +L H           GG+  +V+ +S  +          IR  L+   ++  +VALP  
Sbjct: 277 AWLQHAYAHTAP----GGQVLMVMPASVAYRKAGR----RIRSELVRRGIVRQVVALPPG 328

Query: 397 LFFRTNIATYLWILSNRKTEERRG---KVQLINATD 429
                ++  +LW L   +          V++++ TD
Sbjct: 329 TATSHSLPVHLWCLRRPENTSGTDTHHTVRMVDLTD 364


>gi|254372942|ref|ZP_04988431.1| hypothetical protein FTCG_00513 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570669|gb|EDN36323.1| hypothetical protein FTCG_00513 [Francisella novicida GA99-3549]
          Length = 789

 Score = 91.2 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 114/440 (25%), Gaps = 126/440 (28%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E  +    +         ++ E                 + TL     +   + +I   +
Sbjct: 251 EKQKQKFIKAGDFQQAEELEREILSLKK-----AIPPSYMQTLFKEVKKAFEKDHIFESN 305

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +  +    +  F   +  LEK  L                     V    +E  + R   
Sbjct: 306 ETIR--IRESSFEDIVKELEKYNL---------------TKTGADVKGIAFETFLGR--- 345

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
                   F TPR VV     +L    + L            DP  G+GGFL  A   V 
Sbjct: 346 TFRGELGQFFTPRKVVEFMVDVLDIKQNELI----------CDPCAGSGGFLIRAFEIVK 395

Query: 229 DCGSH--------------------------------------------HKIPPILVPHG 244
           D                                                 +        G
Sbjct: 396 DKIDEKYIRLKKLKQREVFGENLENIDDEKLKAKYQQVINELNEKQKLEIQYLSKSSIFG 455

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGK 303
            +  P    V    M++         D    I     L   +     RF   L+NPPFG 
Sbjct: 456 TDANPRMARVSKMNMIMHG-------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGT 508

Query: 304 KWEKDKDAVEKEHKN----------------------------GELGRFGPGLPKISDG- 334
              KD   V +E K                             G+  R      +IS   
Sbjct: 509 NLGKDNSKVSEEDKYTDEKMIAHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISGAT 568

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            +LF+    + L+     GGR  IVL    L +        + R +      I  IV+LP
Sbjct: 569 EVLFVERCLDLLKS----GGRMGIVLPEGVLNSSNLQ----KAREYFESRAKILLIVSLP 620

Query: 395 TDLFFRTN--IATYLWILSN 412
            DLF  +   + T L  L  
Sbjct: 621 QDLFVSSGATVKTSLVFLKK 640


>gi|332800245|ref|YP_004461744.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
 gi|332697980|gb|AEE92437.1| N-6 DNA methylase [Tepidanaerobacter sp. Re1]
          Length = 627

 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 151/482 (31%), Gaps = 109/482 (22%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E  R    E+Y       I  E+F ++  +  Y     +L      N  +  + YI   +
Sbjct: 176 EIFRYEYVEEYKDAAVQEIR-EAFKEIKDHPDYVA---TLDNGEKANIFSQ-DEYIKLEN 230

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-RFG 167
            N         + + +  L+    L  I  +      +   +   V+  +++ L+R +F 
Sbjct: 231 PNI--------YIAVLKALQD---LGPIKIDGVERPANLMDLTGDVLGRVFDVLLRGKF- 278

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPG-----MIRTLYDPTCGTGGFL 220
            E   G   ++TPR V   A  ++L     D   K             + D  CG+ GFL
Sbjct: 279 -ENKGGMGIYLTPRQVTEAAAEMVLHDLTKDGAAKLIERDSEGIPTLRIGDLCCGSAGFL 337

Query: 221 TDA----MNHVADCGSHHKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDP 268
                    ++ +  +  K                G +  P         M +      P
Sbjct: 338 IKMLQKTERYLLNKLTGDKKQYEELFEEIKEHSFIGADNSPGMVLKARINMALHGAPKCP 397

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK---------------------WEK 307
                      ++L         F   L+NPPF K                       + 
Sbjct: 398 IFQTR------NSLMNTRLEPGTFDAILTNPPFSKTGVSKTIKKGRTTVENPEGVEIIKY 451

Query: 308 DKDAVEKEHKN-----------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
               ++++ +N               R         D ++LF+      L+     GG  
Sbjct: 452 YSSDIDEDGQNRMNPYGLSLGSKPDSRGKWKEVNSVDPAVLFIDRNLQLLKP----GGLL 507

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDL------------IEAIVALPTDLFF--RTN 402
            IV+    L N    SG+  +R +++                ++A+++LP + F      
Sbjct: 508 MIVVPDGILSN----SGDKYVREYIMGKKNPVTGEFEGGKAILKAVISLPQETFALSGAG 563

Query: 403 IATYLWILSNRK-TEERRGKVQLINATDLWTSIR-----NEGKKRRIINDDQRRQILDIY 456
             T L  L  ++   E++G V +  A ++  +++       G     +      +I++ Y
Sbjct: 564 AKTSLLYLKKKEHPGEKQGPVFMAVADEVGFTVKQNVEVQLGDDHNDLL-----KIVEAY 618

Query: 457 VS 458
             
Sbjct: 619 KK 620


>gi|206896558|ref|YP_002247704.1| type I restriction/modification enzyme [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206739175|gb|ACI18253.1| type I restriction/modification enzyme [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 678

 Score = 90.8 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 123/426 (28%), Gaps = 101/426 (23%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------------HKIPP 238
           +   +YDP  GTGGF+  A   V     +                          ++   
Sbjct: 6   IGEKIYDPAAGTGGFILRAFEVVKSKIDNLVKAGMRVNESTAAYNGVQFDEAEMLYRKLK 65

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--TGKRFHYCL 296
               +  E  P+ + + +  M++         D   N+ +  +L         +++   L
Sbjct: 66  EESLYAVEKAPDVYKLALMNMILHN-------DGKSNLFEADSLDNRAQLEHKEKYDVVL 118

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGG 354
           +NPP+G   +      E   K  E                LF+ H+   L    P     
Sbjct: 119 TNPPYGPLAQSRVGTFEFHAKRYEA---------------LFIQHIMAALRPSEPGKKRS 163

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           RA +++    LF     S    IR  LL    ++A+ ++P  +F   + + T +      
Sbjct: 164 RAVVIILDKILF--DNSSVFKNIRMKLLREFDLKAVFSMPAGIFQPYSGVKTTVLYFEKP 221

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             EE                   E KK+                     K    +D +  
Sbjct: 222 TKEEWD-----------------ETKKQNAYT----------------TKQVLFVDVKED 248

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
           G+      RP+  +F  D   +   E        +      W+D L    +++  +   +
Sbjct: 249 GFTLTTQRRPINGAFQGDDPNI--YEPPCGNLPKAVEVFRRWIDWLNNPTKELPDFIDND 306

Query: 534 SFVKESIKSNEAKTLKVKASKSFI----VAFINAFGRKDPRADPVTDVNGEWIPDTNLTE 589
                +I+  + K   +                    +    +      G  I   +   
Sbjct: 307 FCWTATIEEIKTKDYNLNPGLYRKTIKGKQKWEVVSLR----EICDIQKGTSITKADT-- 360

Query: 590 YE-NVP 594
            E NVP
Sbjct: 361 VEGNVP 366


>gi|238898673|ref|YP_002924354.1| putative restriction endonuclease, N6_Mtase domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466432|gb|ACQ68206.1| putative restriction endonuclease, N6_Mtase domain protein
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 872

 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 132/416 (31%), Gaps = 86/416 (20%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           I   +   K IFE  D  +          +  +      +      +   +   ++E  +
Sbjct: 249 IEISTKKKKRIFEKDDQINLTP-----ETINGVVSKLEHL--FLFGIDADLNGRLFETFL 301

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               +   +    + TPR VV L  AL     DA   +       +YD  CGTGGFL D 
Sbjct: 302 S--ATMRGKDLGQYFTPRSVVKLGVALAGLKIDA---QDISRSDRVYDGCCGTGGFLIDV 356

Query: 224 MNHV------------ADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPR 269
              +                 + +        G ++  +P    +    M +        
Sbjct: 357 FADMWSKIEKNPSLSKEKKEEYKQAIAYGHIFGADIGRDPNLSRIARLNMYLHG------ 410

Query: 270 RDLSKNIQQGSTLSK--DLFTGKR--------------------FHYCLSNPPFGKKWEK 307
            D    I     L K   +    +                    F   ++NPPF KK+  
Sbjct: 411 -DGGSCIYNIDALDKELPVHKTDKPELLAEKEQMRNIYANKEGFFDVIITNPPFAKKYSI 469

Query: 308 DKDAVEKEHKNGELGR---------FGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAA 357
            K   +++++     R         +  G  K     +++F+    + L+     GGR  
Sbjct: 470 GKSKDKEKNEISNAERILSQYSLKTYDAGKVKTELRSNLMFMERYYDVLKK----GGRLL 525

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT--NIATYLWILSNRKT 415
            V+    L         S  R WL E  +I A+V+LP D F R+   + T + IL+ + T
Sbjct: 526 TVIDDGILNGKD----YSWFRDWLREKFIINAVVSLPGDAFQRSMDRVKTSILILTKKHT 581

Query: 416 EERRGKVQLI---------NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           E        +         +     T   +   K++    ++   I   Y    +G
Sbjct: 582 ENESQPSIFMYPCVFVGIDDPARARTLPIDAHNKKK--AKEEIEDISHEYQKFTSG 635


>gi|317182677|dbj|BAJ60461.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57]
          Length = 679

 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 131/430 (30%), Gaps = 92/430 (21%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 262 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLKKDSSITKQ 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 317 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 358

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---- 229
               +TP  V  + + LL     +           + D   G+ GFL  +M  + +    
Sbjct: 359 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLATGSAGFLISSMVLMIEDIEK 408

Query: 230 --------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                        K        G EL  E  ++    M++R        D S  I +G+T
Sbjct: 409 TYGKNTTKANEKIKDAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNT 461

Query: 282 LSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
              +   +   + +  L NPPF  +                               M F+
Sbjct: 462 FETNKKIYEDFKPNILLLNPPFSYEENG----------------------------MPFI 493

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 ++     G   AI++  S    G   +  S +   +L+   + A + +PTDLF 
Sbjct: 494 KFGLEYMQK----GALGAIIIQDSA---GSGQALRSNV--EILKKHSLLASIKMPTDLFM 544

Query: 400 R-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               + T ++I    +  +    V+ I+  +        G         +  +I+ IY +
Sbjct: 545 PQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKA 604

Query: 459 RENGKFSRML 468
             N K S+ L
Sbjct: 605 GLNAKVSKEL 614


>gi|71893975|ref|YP_279421.1| hypothetical protein MHJ_0627 [Mycoplasma hyopneumoniae J]
 gi|71852102|gb|AAZ44710.1| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 787

 Score = 90.8 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 75/498 (15%), Positives = 152/498 (30%), Gaps = 107/498 (21%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            NL++Y+ + +     IFE  +    I+ +            ++ I +         + N
Sbjct: 213 QNLQNYLYNSTFKTVDIFELNNIVELISNV------------YNLINISHKNYKGHDIMN 260

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +  + R++ S  ++   +  TP  +  L   L+                 + DPTCG+G
Sbjct: 261 AFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGSG 311

Query: 218 GFLTDA-------------------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            FLT+A                              K        G EL      +    
Sbjct: 312 TFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQACKDIKNNKLIGIELNEFNATLAGIN 371

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+         D S NI Q     +      ++   L NPPF +K              
Sbjct: 372 MLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES------------ 412

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            + F+      L+      G+ A ++  S L      + E   R
Sbjct: 413 ----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLKR 452

Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
            +++    +  I++LP D+F     + T + +L     E+ + K+Q              
Sbjct: 453 IFMMAK--VSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIK-KIQ------------KL 497

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSR----MLDYRTFGYRRIKVLRPLRMSFILDK- 492
             K++ I +  +   L   +   +  F            F  +  ++ + L+  F   + 
Sbjct: 498 ASKKKEIEEHTQNIFL---IDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQA 554

Query: 493 -TGLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPYG-WAESFVKESIKSNEAKTL 548
                R + ++++ + +        + +  K M +                 K N +K  
Sbjct: 555 LERNLRFDEELSFERFNTNRTFDIEESVFKKYMKENFASKVLSGIENQVILKKKNLSKYK 614

Query: 549 KVKASKSFIVAFINAFGR 566
            +K     I   ++   +
Sbjct: 615 NIKFKFFAIDKILDFISK 632


>gi|330937292|gb|EGH41303.1| type I restriction-modification system DNA methylase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 199

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 62/199 (31%), Gaps = 27/199 (13%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------------EPTRSA 54
           ++      +W  A  L G     ++   +L    L+ +                +P+   
Sbjct: 2   TSEEFKKTLWDTANKLRGSVSAAEYKYPVLGLVFLKYVSDLYDTQAGVIQDRLADPSSEL 61

Query: 55  VRE--KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             E  +  A   +    +         F+  +E    TL  +    N    +      A 
Sbjct: 62  YIEDAELRAESAAIFVEDKTFFTQDNVFWVPAEAKFETLLQSAAAANFAQLLDK----AM 117

Query: 113 AIFEDFDFS------STIARLE-KAGLLYKICKNFSGIELHPDTV-PDRVMSNIYEHLIR 164
            + E  + S         +RLE + G L ++ +  + ++  P       V   +YE+ + 
Sbjct: 118 GLIESENLSLKGVLYREFSRLELEPGKLGELFELIAKLKFDPKEHGSRDVFGEVYEYFLG 177

Query: 165 RFGSEVSEGAEDFMTPRDV 183
           +        A+    PR V
Sbjct: 178 QCALNEG-PAQASSIPRKV 195


>gi|194246656|ref|YP_002004295.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
 gi|193807013|emb|CAP18449.1| N-6 DNA methylase [Candidatus Phytoplasma mali]
          Length = 702

 Score = 90.4 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 141/472 (29%), Gaps = 81/472 (17%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L + N  +    Y+       K++  D              +L ++  N   +    +  
Sbjct: 135 LLNQNINDEKIKYLHEQMCLIKSLLGDNGLEII------KDVLEELKTNIYHLLDSKNKY 188

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              ++ N YE  + ++    +      +TPR +  L T L+      +          + 
Sbjct: 189 SYDIIGNFYEVFL-KYAGVTNVKNGIVLTPRHITELFTKLIDISSTDV----------VL 237

Query: 211 DPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           DP CGTGGFL   MN + D                   G + +P  + + ++ ML R   
Sbjct: 238 DPCCGTGGFLIAGMNSIIDKLDNKNEKEINKIKQNQIIGFDKDPTMYTLSISNMLFRG-- 295

Query: 266 SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                D    I      S++         K+      NPP+  K                
Sbjct: 296 -----DGKSQIYNLDFFSEEVDKKIKEGTKKPTIGFINPPYAGKSTPIN----------- 339

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                   P   +   L         +L     GR  ++   S   N         IR  
Sbjct: 340 --------PTKKEIEFL--------EKLLKLVDGRVVMIAPLSTYINDNP------IRNR 377

Query: 381 LLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLW-TSIRNEG 438
           +L+   +E I+ +P  +F    +  T + I         + +V   N  D      +N+G
Sbjct: 378 ILKKHTLEKIIQMPKKIFEPNASTHTAISIFKTNIPHNNK-EVDFYNLEDDGLVLFKNKG 436

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARL 498
           +  R        +         N   S+  D   +   +IK      +SF   KT    L
Sbjct: 437 RVDRFHKWGDIEK------DFLNKFHSKYYDGYNYLKHQIK-ENDEWISFAYVKTNYNHL 489

Query: 499 EAD---ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES-FVKESIKSNEAK 546
                 +T +K         L IL     +I          V    KSN  K
Sbjct: 490 TEKDFLLTIKKYVIFQIKKDLGILNKNFDEITLLEKLNQKIVFTPKKSNITK 541


>gi|296242623|ref|YP_003650110.1| N-6 DNA methylase [Thermosphaera aggregans DSM 11486]
 gi|296095207|gb|ADG91158.1| N-6 DNA methylase [Thermosphaera aggregans DSM 11486]
          Length = 1095

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 117/369 (31%), Gaps = 54/369 (14%)

Query: 100 LESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           L  Y     +  +     F+      +  +E   +L  I    + +E H       V+  
Sbjct: 293 LREYFDKAVEATRDFQAVFETGIYDEVDLVENEEVLKAIDWLINYLEEHRIEKLGDVVGF 352

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE LI     E       F TPR +  L     +   D            + DP CG+G
Sbjct: 353 IYEDLI---PGEERHQLGQFYTPRPIAELIVKWCVRSPDDR----------VLDPGCGSG 399

Query: 218 GFLTDAMNHVADCG------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRL- 264
            FL +A   +A+                     +   HG +L      +    + ++ + 
Sbjct: 400 TFLVEAYKRLAELKLKKPWSEIKHVPGDVHRQILRQLHGVDLNEFPAHLTAMNLAMKNVR 459

Query: 265 ----ESDPRRDLSKNIQQGSTLSKDLF----TGKR--------FHYCLSNPPFGK-KWEK 307
               E          I  G  +          G++        F   + NPP+       
Sbjct: 460 APSPEMYVFVRDYFTIMPGHQVLTPYKVRTVEGEKPVEVVFKDFDAVVGNPPYTPWNQIP 519

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           ++         G++ R       ++ G++  +F+  + +  +     GGR  +++S S L
Sbjct: 520 EETREIILELYGKVLRNYNLRKFVTGGALPGIFVPWIVHSAKFLRE-GGRLGMIISDSWL 578

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN--RKTEERRGKVQ 423
                        ++L +N  + AI+ L   +F    I T + +L     K E     + 
Sbjct: 579 GTQYGVG----FVKYLADNFKVVAIIDLAERVFKAPLIGTCIILLEKTSNKNERDDNSIV 634

Query: 424 LINATDLWT 432
            +     + 
Sbjct: 635 FVYLKKQYD 643


>gi|307638192|gb|ADN80642.1| type I restriction-modification system DNA-methyl transferase
           subunit M [Helicobacter pylori 908]
 gi|325998379|gb|ADZ50587.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           2017]
          Length = 506

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/213 (19%), Positives = 89/213 (41%), Gaps = 15/213 (7%)

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++H+   L+      G+ A++L    LF G A   E  IR+ LL    I+ ++ L  +LF
Sbjct: 1   MLHIIKSLKDT----GKGAVILPHGVLFRGNA---EGVIRKNLLMKGYIKGVIGLAPNLF 53

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           + T+I   + +L       R+G V +I+A+  +   + +G K R + D   ++++D + +
Sbjct: 54  YGTSIPACVIVLDKENAHARKG-VFMIDASKDF---KKDGNKNR-LRDQDVQKMIDTFNA 108

Query: 459 RENGK-FSRMLDYRTFGYRRI--KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
            +    +S+M+             + R +     L+K   A + +     K      + +
Sbjct: 109 YKEIPYYSKMVSLEEISANDYNLNIPRYIASKRELEKDLFALINSPSYLPKNEIKAYAPY 168

Query: 516 LDILKPMMQQIYPYGWAESFVKESIKSNEAKTL 548
             + K +   ++     E +     +    K L
Sbjct: 169 FQVFKELKNTLFKKSDKEGYYALKTECENIKEL 201


>gi|294787234|ref|ZP_06752487.1| putative restriction enzyme alpha subunit [Parascardovia
           denticolens F0305]
 gi|315227217|ref|ZP_07869004.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|294484590|gb|EFG32225.1| putative restriction enzyme alpha subunit [Parascardovia
           denticolens F0305]
 gi|315119667|gb|EFT82800.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 622

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 109/342 (31%), Gaps = 45/342 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE-GAEDFMTPRDVVHLATALL 191
           L  + +      +      +    ++       F   V +       TP  +       +
Sbjct: 257 LRTLLEYIDSNVVPYINNKNTAGQDLLNLFFTTFNKYVGKSDKNQAFTPDHICDFMCKAI 316

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---VPHGQELE 248
                            + DP CG+G FL  AM    D     +    +     +G E E
Sbjct: 317 GV----------SKNSRVLDPCCGSGAFLVRAMVDAMDDCDTEEEREKVKREQIYGIEYE 366

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEK 307
              + +    MLI         D + NI Q S  +K  +      +  L NPP+    + 
Sbjct: 367 DGAYGLSSTNMLIH-------SDGNSNIIQDSMFNKAKWIESNDINTVLMNPPYNATKKF 419

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
              A  K+    +      G+         F+ ++A  +          A++L       
Sbjct: 420 CDPAYVKQWGKTKKEDPSKGIH--------FVEYIAKHVNPTAK----MAVLLPMQAAI- 466

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILS-NRKTEERRGKVQL- 424
               +   + ++ +L N  ++A+ +LP ++F+   +      I   ++K E+   +    
Sbjct: 467 -GTSNEIKDFKKKMLANYTLDAVFSLPNEMFYPGASAVACCMIFDLSQKHEKANRETFFG 525

Query: 425 INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRE 460
               D +   +  G       +   +      Q L++Y +R+
Sbjct: 526 YFKDDKFIKRKGLGRVEQTDSQGNSLWAQTEEQWLNLYRNRK 567


>gi|3511126|gb|AAC33717.1| HaeIV restriction/modification system [Haemophilus aegyptius ATCC
           11116]
          Length = 953

 Score = 90.4 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136
           +      N    +     +  + + E      F  ++  A L+          A +L +I
Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +    I+L  +    + + +++E  + +    V +    F TP  +V    + L     
Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253
              K +P     + D  CG G FLT+  + +                  +G E E     
Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308
           V      +   +         NI     L+++           F   ++NPP+    +  
Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              +  E K            +  +    F      K +   +  G A IVL SS L NG
Sbjct: 553 LSTIFDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                  + R  LL++  + AI    +  F +T   T    L  +
Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651


>gi|319775884|ref|YP_004138372.1| HaeIV restriction/modification system [Haemophilus influenzae
           F3047]
 gi|317450475|emb|CBY86692.1| HaeIV restriction/modification system [Haemophilus influenzae
           F3047]
          Length = 1062

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136
           +      N    +     +  + + E      F  ++  A L+          A +L +I
Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +    I+L  +    + + +++E  + +    V +    F TP  +V    + L     
Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253
              K +P     + D  CG G FLT+  + +                  +G E E     
Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308
           V      +   +         NI     L+++           F   ++NPP+    +  
Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              +  E K            +  +    F      K +   +  G A IVL SS L NG
Sbjct: 553 LSTISDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                  + R  LL++  + AI    +  F +T   T    L  +
Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651


>gi|304387519|ref|ZP_07369708.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
 gi|304338406|gb|EFM04527.1| type I restriction-modification system DNA-methyltransferase
           [Neisseria meningitidis ATCC 13091]
          Length = 215

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              +L    L+ +                 +GG  I+L      AG +F       +  L
Sbjct: 21  KNYVLTLLFLKYVSD------------KHKYGGGMIELH-----AGTTF-----DDIVKL 58

Query: 92  GST-NTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKA----GLLYKICKNFSGIE 144
            +T +  + L   IA  ++  + K + +  DF+    +L K       L ++   F  + 
Sbjct: 59  KNTADIGDRLNKIIAQIAEANDLKGVIDVTDFNDE-DKLGKGKEMIDRLSRLVGIFKKLN 117

Query: 145 LHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           L  +   D  +  + YE+L+R F +E  +    F TP +V  +   ++    D
Sbjct: 118 LSSNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISAD 170


>gi|257457139|ref|ZP_05622316.1| DNA methylase-type I restriction-modification system [Treponema
           vincentii ATCC 35580]
 gi|257445518|gb|EEV20584.1| DNA methylase-type I restriction-modification system [Treponema
           vincentii ATCC 35580]
          Length = 670

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/466 (15%), Positives = 138/466 (29%), Gaps = 95/466 (20%)

Query: 44  LECALEP--------TRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           L   L          ++  +  +  +       ++ E         F    +   + L  
Sbjct: 180 LSDILSERWTIDDLISKDKLLTEKKSLKDLILEMEDEVLANAGVDVFEEVFKLIFTKLYD 239

Query: 94  T---------NTR-NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKN 139
                     +    N         D  + +F+           + A +L    +     
Sbjct: 240 EMESGRNQVRHLEFRNYGDTETELKDKIQKLFDKAKNKWDGVFSQDAKILLSPSHLSVCV 299

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            S  ++        V+ + +E+L+ +           + TPR V+ +   +L        
Sbjct: 300 SSLQDVKLFNSNLDVVDDAFEYLMSK---SSKGEKGQYFTPRYVIDMCVKML-------- 348

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---------LEPE 250
             +P    T+ DP  G+ GF    + +V       K          +         +   
Sbjct: 349 --NPKADETMIDPASGSCGFPVHTIFYVWKQILKEKGIEQSHLFTSQEKPAECTDYVNDN 406

Query: 251 THAV---CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---------------- 291
             A+     A  + R L      D   N+   +TL  + +                    
Sbjct: 407 VFAIDFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEDTTKTEDWTDTYNEGWKKF 465

Query: 292 --------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                         F   ++NPPF    ++ +   + E      G++   + +     +L
Sbjct: 466 KKLRTIKNSNYSFEFDILMANPPFAGDIKEQRIIAKYELGKNARGKYQSNVGR----DIL 521

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+    N L+     GGR AIVL      N    S +  IR ++ E   I A+V L  ++
Sbjct: 522 FIERNLNFLKP----GGRMAIVLPQGRFNN----SSDKYIRDFITERCRILAVVGLHGNV 573

Query: 398 FF-RTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKK 440
           F   T   T +  +     K   ++    +  AT    S  N G K
Sbjct: 574 FKPHTGTKTSVLFVQKWDDKLCPKKEDYPIFFATMQEPSKDNSGDK 619


>gi|312874784|ref|ZP_07734803.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|311089529|gb|EFQ47954.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
          Length = 624

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 108/361 (29%), Gaps = 49/361 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE----- 175
           S  +   + A L Y   +       +         +   + L+  F +  ++        
Sbjct: 243 SKVLDDQDIASLTYDELQKILEFINNNIIPFINDSNTAGQDLLNLFFTTFNKYIGKSDKN 302

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---S 232
              TP  +       +    ++             DP  G+G FL  AM    D      
Sbjct: 303 QAFTPDHICDFMCKAVGVNKNSRI----------LDPCSGSGAFLVRAMTDAMDDCDTEE 352

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291
             +        G E E     +    MLI         D + N+ Q S   + +    K 
Sbjct: 353 EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 405

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  L NPP+    +       K  K+              D S  F  H    +     
Sbjct: 406 INIVLMNPPYNATRKFCDPEYVKSWKSS----------NKEDPSKGF--HFVEYVARHIP 453

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL 410
              + A++L           S   + ++ +L+N  +EA+ +LP ++F+   +      I 
Sbjct: 454 ANSKIAVLLPMQAAI--GTSSEVKKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMIF 511

Query: 411 S-NRKTEERRGKVQL-INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRENG 462
             ++K      +        D +   +  G           +    + + LD+Y +++  
Sbjct: 512 DLSQKHARSNTETFFGYFKEDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKEV 571

Query: 463 K 463
            
Sbjct: 572 P 572


>gi|329123732|ref|ZP_08252292.1| type II restriction-modification enzyme [Haemophilus aegyptius ATCC
           11116]
 gi|327469931|gb|EGF15396.1| type II restriction-modification enzyme [Haemophilus aegyptius ATCC
           11116]
          Length = 911

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136
           +      N    +     +  + + E      F  ++  A L+          A +L +I
Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +    I+L  +    + + +++E  + +    V +    F TP  +V    + L     
Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253
              K +P     + D  CG G FLT+  + +                  +G E E     
Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308
           V      +   +         NI     L+++           F   ++NPP+    +  
Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              +  E K            +  +    F      K +   +  G A IVL SS L NG
Sbjct: 553 LSTISDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                  + R  LL++  + AI    +  F +T   T    L  +
Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651


>gi|329121926|ref|ZP_08250539.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965]
 gi|327467372|gb|EGF12871.1| N-6 DNA methylase [Dialister micraerophilus DSM 19965]
          Length = 674

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 125/416 (30%), Gaps = 101/416 (24%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIAR 126
            +         FY TSE   +  G    +N +E          K   IFE  D  +   R
Sbjct: 207 EDERNIPKPLEFYATSEERSNRDGQLTVKNRIEKIFERVKKEKKNAKIFEANDGINLHPR 266

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I        L    +   +    YE ++    + +     +F TPR+V+ +
Sbjct: 267 -----TLSYIVSELQKYSLLNTRID--IKGKAYEEIVG---ANLRGDRGEFFTPRNVMQM 316

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------------------- 227
              ++          +P +   + D +CGTGGF+  AM H                    
Sbjct: 317 VVEMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLKSEFTKDIGKDKGNW 366

Query: 228 -----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                                G ++ P+        M++         D S NI Q ++L
Sbjct: 367 NDYEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVMNN-------DGSGNILQINSL 419

Query: 283 SKDLFTGKR------------------------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                                            F   ++NPPFG K      A+  + + 
Sbjct: 420 LPPHEWTDDFKTRLSSALQIDKKSIMNQYDIGFFDVIVTNPPFGSKIPIKDHAILSQFEL 479

Query: 319 GELGRFGPGLPKISDGSM------------LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               R      K    +M            LF+      L+     GGR  IVL  + L 
Sbjct: 480 ---ARIWNHNKKTGKWTMTDRYQSSVSPEILFIERCYQFLKP----GGRMGIVLPDALL- 531

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRGK 421
                 G   IR WL++N  I A + L  D F       T + IL  +  EE   +
Sbjct: 532 ---GSPGTGYIREWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEEISKE 584


>gi|307637134|gb|ADN79584.1| typeI restriction enzyme-M protein [Helicobacter pylori 908]
 gi|325995725|gb|ADZ51130.1| type I restriction enzyme M protein [Helicobacter pylori 2018]
 gi|325997321|gb|ADZ49529.1| type I restriction enzyme M protein [Helicobacter pylori 2017]
          Length = 381

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 122/378 (32%), Gaps = 69/378 (18%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTR-----SAVREKYLAFGGSNIDLESFVKVAGYSFY 81
              ++  +I    L + L    E        +     Y  F G   +             
Sbjct: 32  DGNEYK-IITQCFLYKFLCDKFEFFFEQEFPNKTIRDYKDFNGEEKEDFFLTLSDKQLPK 90

Query: 82  NTSEYSLSTLGSTNTRNN-----LESYIASFSDNAKAIFEDFDFSSTIARL--------- 127
              +  L+ L   +  +N     L++     S N   +F       T   L         
Sbjct: 91  LAYDELLNYLFEKHFNDNDLHLKLDAIFNRISSNNAKLFNTKSTDKTTIALFESVSQYIN 150

Query: 128 EKAGL------LYKICKNFSGIELHPDTVPD---RVMSNIYEHLIRRFGSEVSEGAEDFM 178
           E++        L    KNF+  +   +          + I+E+L++ + +       ++ 
Sbjct: 151 EESKRANFTRALLDKLKNFNFKQAFLNLQNQQGYDFFAPIFEYLLKDYNNAGGGKYAEYY 210

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  +   LL+          P     +YDP+ GTG  L    + +           
Sbjct: 211 TPLSIASIIAKLLVI--------KPTQSVKIYDPSAGTGTLLMALAHQI--------GTD 254

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYC 295
               + Q++  ++  +    +++  L    R        +G+TL+    +     +  + 
Sbjct: 255 SCTLYAQDISQKSLRMLKLNLILNDLTHSLRYA-----IEGNTLTNPYHSKDHKGKMDFI 309

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSM-----LFLMHLANKLEL 348
           +SNPPF   +  +   + +   +     F  G+P    +D S      LF  H  N L  
Sbjct: 310 VSNPPFKLDFSNEHAEISQNKND-----FFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSP 364

Query: 349 PPNGGGRAAIVLSSSPLF 366
                G+ AI++ +  + 
Sbjct: 365 K----GKGAIIVPTGFIS 378


>gi|254674214|emb|CBA09998.1| type I restriction-modification system, M subunit [Neisseria
           meningitidis alpha275]
          Length = 215

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              +L    L+ +                 +GG  I+L +          +T+   +  L
Sbjct: 21  KNYVLTLLFLKYVSD------------KHKYGGGMIELHA----------DTTFDDIVKL 58

Query: 92  GST-NTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKA----GLLYKICKNFSGIE 144
            +T +  + L   IA  ++  + K + +  DF+    +L K       L ++   F  + 
Sbjct: 59  KNTADIGDRLNKIIAQIAEANDLKGVIDVADFNDE-DKLGKGKEMIDRLSRLVGIFEKLN 117

Query: 145 LHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
           L  +   D  +  + YE+L+R F +E  +    F TP +V  +   ++    D
Sbjct: 118 LSSNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGISAD 170


>gi|319896580|ref|YP_004134773.1| haeiv restriction/modification system [Haemophilus influenzae
           F3031]
 gi|317432082|emb|CBY80432.1| HaeIV restriction/modification system [Haemophilus influenzae
           F3031]
          Length = 1062

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 110/345 (31%), Gaps = 44/345 (12%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136
           +      N    +     +  + + E      F  ++  A L+          A +L +I
Sbjct: 329 ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 388

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +    I+L  +    + + +++E  + +    V +    F TP  +V    + L     
Sbjct: 389 VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 445

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHA 253
              K +P     + D  CG G FLT+  + +                  +G E E     
Sbjct: 446 LQNKNAPK----VIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSK 501

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKD 308
           V      +   +         NI     L+++           F   ++NPP+    +  
Sbjct: 502 VAKVSAFMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGF 552

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              +  E K            +  +    F      K +   +  G A IVL SS L NG
Sbjct: 553 LSTISDEDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAEGIAVIVLPSSILTNG 609

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                  + R  LL++  + AI    +  F +T   T    L  +
Sbjct: 610 NI---YIKCREILLQHFDLVAIAEFGSGTFSKTGTNTATLFLRRK 651


>gi|240047665|ref|YP_002961053.1| hypothetical protein MCJ_005510 [Mycoplasma conjunctivae HRC/581]
 gi|239985237|emb|CAT05250.1| HYPOTHETICAL Restriction enzyme BgcI subunit alpha [Mycoplasma
           conjunctivae]
          Length = 777

 Score = 90.0 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 158/481 (32%), Gaps = 64/481 (13%)

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-- 139
           N     +  L     +N +         NAK   E    SS +  ++   L Y+  +   
Sbjct: 195 NGKSKDILNLIKDIIKNKIND-----DQNAKEKLEVT--SSVLDDMQLVNLKYENLQRII 247

Query: 140 -FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE-----GAEDFMTPRDVVHLATALLLD 193
            F   E+ P            E L+  F +  ++           TP  +     +L+  
Sbjct: 248 YFIEKEIIPFIDEKSNYG---EDLLNLFFTTFNKYVQKDDKNQAFTPSHITDFMASLVQI 304

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP---ILVPHGQELEPE 250
            +++           + DPTCG+G FL  AM+ +       K+          G E E  
Sbjct: 305 NENSR----------VLDPTCGSGSFLVQAMSQMIKNIDDPKLKQKIKREQIFGIESEYI 354

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             ++    MLI         D   NI   S    ++    K  +  L NPPF  K     
Sbjct: 355 AFSLASTNMLIH-------DDGLSNIVLDSCFERREWIESKNINAVLMNPPFNGKNMPSD 407

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             V++                 S   + F+  +AN ++     G   A +L  +      
Sbjct: 408 FTVKENTGMD------------STKGLAFVEFVANSVKTK---GALLATILPLATAIGRD 452

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQL-INA 427
               E +  + +L    ++A+ ++P DLF    + +  + +    K   +R         
Sbjct: 453 QIIKEYK--KKMLAKHTLKAVFSMPNDLFHPGASASVCIMLFELNKPHIKRNATFFGYYK 510

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFS----RMLDYRTFGYRRIKVLR 482
            D +   +N G+  +   +  ++  L+ Y+  +   +FS       +        ++   
Sbjct: 511 DDGFIKKKNLGRVEKKDWNLTKQLWLETYLQSKEIPEFSVLENVDHNDEWLAEAYMETDY 570

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPL-HQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
               ++   KT    L   +    L  +       D LK  +++   +  ++ F  +  K
Sbjct: 571 NQLQAWDFSKTIRDYLSFKLKNGILEKISDNKIIQDNLKLNVKEWKYFQISDLFEVKKAK 630

Query: 542 S 542
           +
Sbjct: 631 N 631


>gi|315653963|ref|ZP_07906879.1| restriction enzyme alpha subunit [Lactobacillus iners ATCC 55195]
 gi|315488659|gb|EFU78305.1| restriction enzyme alpha subunit [Lactobacillus iners ATCC 55195]
          Length = 624

 Score = 89.6 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 108/361 (29%), Gaps = 49/361 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE----- 175
           S  +   + A L Y   +       +         +   + L+  F +  ++        
Sbjct: 243 SKVLDDQDIASLTYDELQKILEFINNNIIPFINDSNTAGQDLLNLFFTTFNKYIGKSDKN 302

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---S 232
              TP  +       +    ++             DP  G+G FL  AM    D      
Sbjct: 303 QAFTPDHICDFMCKAVGVNKNSRI----------LDPCSGSGAFLVRAMTDAMDDCDTEE 352

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291
             +        G E E     +    MLI         D + N+ Q S   + +    K 
Sbjct: 353 EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 405

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  L NPP+    +       K  K+              D S  F  H    +     
Sbjct: 406 INIVLMNPPYNATRKFCDPEYVKSWKSS----------NKEDPSKGF--HFVEYVARHIP 453

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL 410
              + A++L           S   + ++ +L+N  +EA+ +LP ++F+   +      I 
Sbjct: 454 ANSKIAVLLPMQAAI--GTSSEVKKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMIF 511

Query: 411 S-NRKTEERRGKVQL-INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRENG 462
             ++K      +        D +   +  G           +    + + LD+Y +++  
Sbjct: 512 DLSQKHARSNTETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKEV 571

Query: 463 K 463
            
Sbjct: 572 P 572


>gi|146291265|ref|YP_001181689.1| site-specific DNA-methyltransferase, type I modification
           [Shewanella putrefaciens CN-32]
 gi|145562955|gb|ABP73890.1| site-specific DNA-methyltransferase, type I modification
           [Shewanella putrefaciens CN-32]
          Length = 234

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 54/245 (22%)

Query: 1   MTEFTGS-AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--- 56
           M +        L + +W  A+ L        +   +L    ++ +  A +  +  ++   
Sbjct: 1   MNQQEQQFLKELESKLWTAADKLRSTLDAAQYKYAVLGLIFVKYVSDAFKLRQEEIKADL 60

Query: 57  ---------------EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST------- 94
                          E+ LA   +    +         F+  +E     L          
Sbjct: 61  ANPDHEYYLDPADFSEEELAAEIAVELEQRDFYTEKNVFWLPTESRWQFLQDNGPRVIGG 120

Query: 95  ----------------NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK 138
                           +  +N    I   +   K +      +  I +      L ++  
Sbjct: 121 ADLEIDGKVKKITSVGHLIDNALEGIERDNPKLKGVLNKSYSALKIDQ----AKLNELIN 176

Query: 139 NFSGIELHPDT-VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             + I     +     ++ ++YE+++ +F     +    F        + ++L    +  
Sbjct: 177 LIATIPFDHKSLNSKDILGHVYEYMLGQFALAEGKKGGQFY-------IMSSLFFTNESH 229

Query: 198 LFKES 202
           L K +
Sbjct: 230 LKKPA 234


>gi|88606674|dbj|BAE79804.1| HP1472-M of type II restriction and modification system
           [Helicobacter pylori]
          Length = 679

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 115/351 (32%), Gaps = 72/351 (20%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           LY+       I    +T    +M  +Y   + ++     +     +TP  V  + + LL 
Sbjct: 321 LYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKELGIVLTPPYVTKMMSELLG 377

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------CGSHHKIPPIL 240
               +           + D   G+ GFL  +M  + +                 K     
Sbjct: 378 VNAKSF----------VMDLATGSAGFLISSMVLMVEDIEKTYGKNTTKANEKIKDAKTT 427

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSN 298
              G EL  E  ++    M++R        D S  I +G+T   +   +   + +  L N
Sbjct: 428 QLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETNKKIYEDFKPNILLLN 480

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PPF  +                               M F+      ++     G   AI
Sbjct: 481 PPFIYEENG----------------------------MPFIKFGLEYMQK----GALGAI 508

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++  S    G   + +S +   +L+   + A + +PTDLF     + T ++I    +  +
Sbjct: 509 IIQDSA---GSGQALKSNV--EILKKHSLLASIKMPTDLFMPQAGVQTSVYIFKAHEPHD 563

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               V+ I+  +        G         +  +I+ IY +  N K S+ L
Sbjct: 564 YEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEEIIKIYKAGLNAKVSKEL 614


>gi|254384451|ref|ZP_04999792.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
 gi|194343337|gb|EDX24303.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces sp. Mg1]
          Length = 561

 Score = 89.6 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 81/253 (32%), Gaps = 42/253 (16%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E L  R    V     D +T   ++              F  +     T+ DP CG G  
Sbjct: 137 EGLATRITDSVGRSGSDHVTSERILRAL---------RHFAGTLPADATVMDPACGIGTL 187

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                   L   GQE EP +  +         L +D       ++ +G
Sbjct: 188 LLTV-----------GPRYGLKRFGQEREPHSARLAQ-------LRADLGGQADVSVTEG 229

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            +L  D +        + +PP G                    R+  G P  ++G + +L
Sbjct: 230 DSLCADQWPQVCADLVVCDPPVGVTDWG-------REALLLDSRWEFGTPPKAEGELAWL 282

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
            H           GGR  +V+ +S  +          IR  L+   ++  +VALP  +  
Sbjct: 283 QHAYAHTAP----GGRVLMVMPASVAYRKAGR----RIRAELVRRGVLTQVVALPGGVAA 334

Query: 400 RTNIATYLWILSN 412
              +  ++W L+ 
Sbjct: 335 SHALPVHVWQLTR 347


>gi|315453693|ref|YP_004073963.1| Type II restriction-modification enzyme [Helicobacter felis ATCC
           49179]
 gi|315132745|emb|CBY83373.1| Type II restriction-modification enzyme [Helicobacter felis ATCC
           49179]
          Length = 1627

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/425 (15%), Positives = 122/425 (28%), Gaps = 65/425 (15%)

Query: 19  AEDLW----GDFKHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFV 73
           A  L     G+++++     IL    L + ++      +    +    +           
Sbjct: 275 ATILRHHSIGNYENS---FYILVDLFLCKVMDELQNEGKDEEEQSLDFYYKGPAADSPLK 331

Query: 74  KVAGY-SFYNTSEYSL-----STLGSTNTRNNLES---YIASFSDNAKAIFE---DFDFS 121
                   Y      L       +         ++   Y   F  +  A+F+    F+  
Sbjct: 332 YCDRLLDLYAKGVEELFKKKVVNVKKEEIAKLFDTAKRYKGKFKKDLDALFDQQKYFNIK 391

Query: 122 STIARLE--------KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
                             +L ++        +   +  ++ + +++E  + R    + + 
Sbjct: 392 KFNFIEIENEEEFQLNFKILVQVADLIKKFYIC-KSENNQFLGDLFEGFLNR---HIHQT 447

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  + +     L          +P     + D  CG G FLT     +A     
Sbjct: 448 EGRFFTPTPITNFIIHSL-----PPLTSNPK----VLDFACGAGHFLT---EFMARH--- 492

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLE---SDPRRDLSKNIQQGSTLSKDLFTGK 290
                    +G E   +   V     +    +       +D   +I    +     F  +
Sbjct: 493 ----KDAKVYGIEKNKDLSKVAKLACIFHNPKSPSLIIFQDALDHIHHTHS---QEFEME 545

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELP 349
            F Y LSNPP+  K                         + ++     F+    + L+  
Sbjct: 546 SFDYILSNPPYSVKGFLSTLDSSVIKSYELHHSVEEKSYESNNAIECFFIERAWHFLKE- 604

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GG  A++L  S L  G       + R  LLE+  I  IV L +  F  T   T +  
Sbjct: 605 ---GGVFALILPVSVLQKGGI---YEKTRTLLLEHFKILCIVELNSRTFGSTGTQTIILC 658

Query: 410 LSNRK 414
               K
Sbjct: 659 AQKLK 663


>gi|312872393|ref|ZP_07732463.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
 gi|311092216|gb|EFQ50590.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2062A-h1]
          Length = 329

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 58/280 (20%)

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SNPP+  KWE  +             RF P     S+ +  F+     +++       
Sbjct: 4   LISNPPYNIKWEPYE-----------DKRFIPESAPKSNANYAFIQTALAEIDHQ----- 47

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A  +L  S L +      E EIR+WLL+   I+ ++ LP  +F  T I+  L +L+ +K
Sbjct: 48  -AVFLLPRSVLSSSNKK--EKEIRKWLLKEGYIQGVIELPERMFESTPISVCLLVLNKKK 104

Query: 415 TEERRGKVQLINATDLWTSI---------------RNEGKKRRIINDDQRRQILDIYVSR 459
              +   V +I+A ++                   R   KK  +++D     ++    + 
Sbjct: 105 ---KTTDVMMIDAREMADKEERYQKGQYGSRAHTNRTYEKKVNVLSDKTIETLVQCINTG 161

Query: 460 ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
              K S          R + +    +  + L  +     E      +             
Sbjct: 162 TCIKIS----------RLVHLELIEKEDWQLVPSRYIAYENKNNSCR-----------SF 200

Query: 520 KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
           + +++ I       + VK  +    AK LK+  +   +  
Sbjct: 201 EDIVRDINRIAKLRNAVKLVVNETLAKKLKLDITSEDLKK 240


>gi|296126598|ref|YP_003633850.1| restriction modification system DNA specificity domain protein
           [Brachyspira murdochii DSM 12563]
 gi|296018414|gb|ADG71651.1| restriction modification system DNA specificity domain protein
           [Brachyspira murdochii DSM 12563]
          Length = 1134

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 151/478 (31%), Gaps = 74/478 (15%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF++ DF           ++ ++ +   G +          + + +E+L+    +   +
Sbjct: 350 DIFDERDFKR------NTSIVKEVVELLQGYQFRYTEKHQF-LGDFFENLL---NTGFKQ 399

Query: 173 GAEDFMTPRDVVHLATA---LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
               F TPR +         +     + +   +   I  + D  CG+G FLT+ M+ +  
Sbjct: 400 EVGQFFTPRILTRFIVQSIPIKKIIKEKILSGNKDFIPKVIDFACGSGHFLTEVMDIIQK 459

Query: 230 CGSHHKIPPILVPHG-----QELEPETHAVCVAGMLIRRLESD------------PRRDL 272
                    + +        +    +      A   I  +E+D               D 
Sbjct: 460 SLLEIGKENLDILKTVRTILERYNDDPDQFIWAEKNIYGIENDYRLVKTTKLSCFFNGDG 519

Query: 273 SKNI-------------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
              I              +G+ L       +RF   +SNPP+         A+     N 
Sbjct: 520 EAQILQTSGIYPFNHDDYRGTLLDTINKENERFDIVVSNPPYSVSG---FKAIMDRSSNN 576

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
               +        +  ++F+  +   L+      G AAI+L  S L N        + R 
Sbjct: 577 AFDLYKDITDSSKEIEVIFIERMKQLLKP----NGYAAIILPVSILQNDGL---YEKART 629

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATDLWTSIRNEG 438
            + EN  ++ IV L ++ F  T   T +  L  R K      K           S  N  
Sbjct: 630 IIFENFYLKGIVKLGSNAFQATGTNTVVLFLQKREKPIRLENK----------ESYINMC 679

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF---ILDKTGL 495
           K ++I+       I+D     +  KF         G   I   R    ++   +LD+  +
Sbjct: 680 KDKKIL-------IIDTGEKDDEKKFLGYSFSNRRGSEGITEERNKEGTYLGSLLDENDI 732

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
                +     +       +  ++K + + IY     + F  E+        L +K  
Sbjct: 733 NNNNINKANYYMIQAFYDNYPKVVKELEKNIYVLDLKDCFNFEADNFVNRINLNIKKK 790


>gi|187931838|ref|YP_001891823.1| N-6 DNA Methylase family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712747|gb|ACD31044.1| N-6 DNA Methylase family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 695

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 97/604 (16%), Positives = 162/604 (26%), Gaps = 142/604 (23%)

Query: 42  RRLECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTL-GSTNTRN 98
           ++L+  LE T     +++        NI   +       +F   S+     +    N   
Sbjct: 107 KKLKEELEKTVEFKGDEFAKVLNKCHNIIRNNDKLSPEAAFDEISKVLFIKIMYERNINQ 166

Query: 99  NLESYIASFS---DNAKAI---------------FEDFDFSSTIARLEKAGLLYKICKN- 139
           N    +  F    +N + I               FE          + +     +I ++ 
Sbjct: 167 NQMFSLDEFKRLRENFREIHKGTSQENDSFIQYRFEQVKIEFEKDHIFEPNETIRIRESS 226

Query: 140 FSGIELHPDTVP-----DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           F  I    +          V    +E  + R           F TPR VV     +L   
Sbjct: 227 FEDIVKELEKYNLTKTGADVKGIAFETFLGR---TFRGELGQFFTPRKVVEFMVDVLDIK 283

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------------- 233
            + L            DP  G+GGFL  A   V D                         
Sbjct: 284 QNELI----------CDPCAGSGGFLIRAFEIVKDKIDEKYIRLKNLKQREVFGENLENI 333

Query: 234 -----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
                                   +        G +  P    V    M++         
Sbjct: 334 DDEKLKAKYEQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG------- 386

Query: 271 DLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN----------- 318
           D    I     L   +     RF   L+NPPFG    KD   V +E K            
Sbjct: 387 DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKK 446

Query: 319 -----------------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVL 360
                            G+  R      +IS    +LF+    + L+     GGR  IVL
Sbjct: 447 IYGDVYEEELKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMDIVL 502

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEER 418
               L +        + R +      I  IV+LP DLF  +   + T L  L        
Sbjct: 503 PEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKK------ 552

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
                 +   + + +++ + +K        +   +   +  E      +   R     + 
Sbjct: 553 ----FTVEEQEQYETVKTQAEKEAEQKYQPQLLEIQQKIDFEKSIKQHITKLRKALKTK- 607

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                  +   LD+T +   E     ++     +       +   Q I      E  + E
Sbjct: 608 TAKNKENLQLTLDETIVEHTEYKKKVKQYKAQLKELEAKQQEEAKQLIKQKFDYEIPIAE 667

Query: 539 SIKS 542
             K+
Sbjct: 668 IEKA 671


>gi|153869117|ref|ZP_01998802.1| Type I Restriction Enzyme [Beggiatoa sp. PS]
 gi|152074333|gb|EDN71198.1| Type I Restriction Enzyme [Beggiatoa sp. PS]
          Length = 689

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 149/513 (29%), Gaps = 114/513 (22%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---- 99
           LE  ++       +K L      ++ E         F  + +   + L    T  N    
Sbjct: 179 LEDLIKEDALNQGKKTLKDVIEEMEDEVLANAGVDVFEESFKLIFTKLYDEFTSANSHKR 238

Query: 100 ---------------LESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLYKICKNFSGI 143
                          + + I    +NA+  +E  F   + I        L          
Sbjct: 239 KRPLQFRVGVDTEAEVHAKIQKLFENAQEKWEGVFPPDAQIELSVSH--LPTCISYLQKY 296

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +L    +   V+   +E+LI +           + TPR V+ L   +L          +P
Sbjct: 297 KLFNSNLE--VIDEAFEYLINK---TSKGEKGQYFTPRYVIDLCVKML----------NP 341

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH---------AV 254
               T+ D   G+ GF   ++ HV       +          E +P  +         A+
Sbjct: 342 KPAETVIDTAAGSSGFTVHSIFHVWKQLLQQEGKDETHLFTAENKPSHYVDYVRKKVFAI 401

Query: 255 ---CVAGMLIRRLESDPRRDLSKNIQQGSTL-----------------SKDLFT------ 288
                A  + R L      D   N+   +TL                   D F       
Sbjct: 402 DFDEKAVRVARCLNL-IAGDGQTNVLHLNTLDWERWKETTGELKWLDRYNDGFKRLRKLT 460

Query: 289 ---------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS---- 335
                       F   ++NPPF    +  +   + E       R      + S  +    
Sbjct: 461 VDKKGENYRDFTFDVLMANPPFAGDIKDTRLIHKYELGKKADSRAVTQSTQKSSKNKGWQ 520

Query: 336 ------MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                 +LF+    + L+     GGR AIVL      N    S +  IR ++ +   I A
Sbjct: 521 DKISRHILFIERNLHFLKP----GGRMAIVLPQGVFNN----SSDYYIRDFIAKQCRILA 572

Query: 390 IVALPTDLFF-RTNIATYLWILSNRKTEERRG---------KVQLINATDLWTSIRNEGK 439
           +V L  + F   T   T +  +     E + G          +    AT       N G 
Sbjct: 573 VVGLHPNTFKPHTGTKTSVLFVQKWNDEPKAGALCPHCENYPIFF--ATQQSMGKNNSGD 630

Query: 440 KRRIINDDQRRQILDIY-VSRENGK-FSRMLDY 470
           K    + +    ++D +         FS  L+ 
Sbjct: 631 KIFARDAETGELLVDKHGHKFVEHDLFSTDLEN 663


>gi|332885870|gb|EGK06116.1| hypothetical protein HMPREF9456_02380 [Dysgonomonas mossii DSM
           22836]
          Length = 1005

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 81/469 (17%), Positives = 151/469 (32%), Gaps = 110/469 (23%)

Query: 32  GKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
            ++++   L++ L    E  +          G   ++   F K      YN  + +L   
Sbjct: 199 KRILMMLILIKYL----EERKDE-------DGNGALNPNEFYKA-----YNPDDPTL--- 239

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-------KICKNFSGIE 144
                  N+++++       K +     F+  I  L+   L          + ++F   +
Sbjct: 240 --EGVLENVDTFVNV----LKELSSKEHFNGQIFLLDDNELSALKEKVDLTLFQHFVKGD 293

Query: 145 LHPDTVPDRVMS-------------------NIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +   T  ++ +                    +IYE  +        +      TP  +V 
Sbjct: 294 VSFFTEGNQGIGQMSLWRLYQFNYLPIELISHIYEDFLAD--ENGQKKKGVVYTPPYLVQ 351

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------------ADCG 231
                 +   D      P     + DP CG+G FL  A   +               +  
Sbjct: 352 FLIDQCMPLKD------PKQNFKILDPACGSGIFLVGAFKRMIQWWRVQNNWKKPKKENI 405

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---------TL 282
              K        G +LE E   +    + +  L+S   R++ +N+               
Sbjct: 406 QELKDLLQKNIFGCDLEDEAVTLSYFSLGLALLDSLSPREIWRNVHFDDLIGYNLYQGDF 465

Query: 283 SKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS--ML 337
            K L  GK    FH  + NPPF  ++    + V+K+ K     R     P I D    +L
Sbjct: 466 FKTLHEGKIKSDFHLIIGNPPFNSEFTDWANLVDKKEKENNTER-----PDIPDNQIALL 520

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALP 394
           FL      L +   GG    I+ S   L+N        + R++L E   I+      +L 
Sbjct: 521 FLEQSIKLLRV---GGNCCLILPSGPVLYNTNTH----DFRKYLFEQYYIKGFFDFTSLR 573

Query: 395 TDLFFRTNI---ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
             LF  ++       + + + R   + R  V       ++   +  G+K
Sbjct: 574 AKLFIGSSSSAKPAVVTVFAERADHKERSCV-----HSIFRRTKASGEK 617


>gi|300811623|ref|ZP_07092101.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497391|gb|EFK32435.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 203

 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 20/209 (9%)

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           LP  S     +++     L       G  A++L +  LF   A   E EI+++L E    
Sbjct: 2   LPPKSKADYAYVLRGLQHLSED----GTMAVMLPTGALFRSAA---EREIQKYLSEKQKT 54

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-KRRIIND 446
            A++ALP      T I T L I   +K+     ++  I+A+     ++N  + K+  + +
Sbjct: 55  HAVIALPQGARNYTAIYTVLLIFKKKKS----DQILFIDASR--DGVKNATRLKQNFLTE 108

Query: 447 DQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
           +   +IL  Y +RE    +SR++              P      +D     +++ + T  
Sbjct: 109 EGFTKILHTYRNREEVDRYSRLVSLDEIRENDYNWNIP----CYIDTFSEKKIDVEATMS 164

Query: 506 KLSPLHQSFWLDILKPMMQQIYPYGWAES 534
            LS   Q       K M++ +  +   E+
Sbjct: 165 SLSA-KQKVIETSKKEMIELLNKFDTPEA 192


>gi|222444445|ref|ZP_03606960.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434010|gb|EEE41175.1| hypothetical protein METSMIALI_00056 [Methanobrevibacter smithii
          DSM 2375]
          Length = 101

 Score = 88.9 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 6  GSAASLANFIWKNAE-DLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           + +  ANFIW  A+  L G +K  D+ KVILPFT+L+R +  L  ++ AV + Y     
Sbjct: 2  SNFSEKANFIWSIADSILRGYYKRNDYQKVILPFTVLKRFDSVLPYSKDAVVQAYEENKN 61

Query: 65 SNIDLESFVKVA------GYSFYNTSEYSLSTLGST 94
           +      +  +         FYN S Y    L   
Sbjct: 62 DDGLELILMSESVDENGKKLGFYNYSPYDFKKLLED 97


>gi|257064729|ref|YP_003144401.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792382|gb|ACV23052.1| type I restriction-modification system methyltransferase subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 654

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 124/403 (30%), Gaps = 100/403 (24%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN 139
           FY TS+   S  G    +  + +           I   FD  + I    ++  L  I   
Sbjct: 218 FYATSDERGSRDGQLTVQKRVGAIFEKVKKRHGKI---FDEDAVIELTPRS--LAYIVSE 272

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
             G  L    +   +    YE ++    + +      F TPR+V+ +   +L   D+   
Sbjct: 273 LQGYSLLNTNID--IKGKAYEEIVG---ANLRGDRGQFFTPRNVMKMVVEMLDPTDEER- 326

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPIL-------------- 240
                    + D +CGTGGF+  AM HV     A+                         
Sbjct: 327 ---------VADTSCGTGGFIVMAMTHVMQRIEAELVDEFGPREDWGVDETMAFQERVSD 377

Query: 241 ----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------ 290
                  G +++ +        M++         D S NI Q ++L              
Sbjct: 378 VASRNFFGFDIDRDLAKATKMNMVMNN-------DGSGNIMQTNSLLPPHEWDMDFKSRL 430

Query: 291 ------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKN-------------G 319
                              F   ++NPPFG K      ++  + +               
Sbjct: 431 AKAIGRDPKSLVNWKSLAMFDVIVTNPPFGTKIPIKDTSILGQFELAHIWECDKTTGKWT 490

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
              R    +P      +LF+      L      GGR  IVL  S L       G   IR 
Sbjct: 491 MTDRLQSSVPP----EILFVERCTQFL----VEGGRMGIVLPDSIL----GSPGLGYIRE 538

Query: 380 WLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGK 421
           WL+ N  I A + +  D F     + T + IL  +   E+  +
Sbjct: 539 WLIANHRIVASLDMHQDTFQPHNGVQTSVLILQKKSQAEKDAE 581


>gi|297190750|ref|ZP_06908148.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150608|gb|EFH30686.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 742

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 41/257 (15%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
           +  ++TP  +  L   LL          S      + DP CG+G  L  A  H A     
Sbjct: 175 SGTYLTPEPLSDLMARLL---------PSSPPPSVVLDPACGSGSLLAAAARHGAK---- 221

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +GQ+  P         + +     D        ++ G +L  D F      
Sbjct: 222 -------GLYGQDSVPVQARRAAVRLRL-----DQAGAGEVGVRIGDSLRADAFPDLTAD 269

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             LSNPP+G +    +       +     R+  GLP  ++  + ++ H    L      G
Sbjct: 270 AVLSNPPYGVRDWGHE-------ELAYDARWAFGLPARAESELAWVQHALAHLPP----G 318

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G A ++L  +      A      +R  L+ +  + A+ ALP       +I  ++W+L   
Sbjct: 319 GHAVLLLPPAT----AARPSGRRVRGELIRSGALRAVAALPAGAAAPLHIGLHIWVLQRP 374

Query: 414 KT-EERRGKVQLINATD 429
           +     R  V  ++   
Sbjct: 375 QQGAVDRTSVLFVDTAS 391


>gi|125973660|ref|YP_001037570.1| N-6 DNA methylase [Clostridium thermocellum ATCC 27405]
 gi|125713885|gb|ABN52377.1| N-6 DNA methylase [Clostridium thermocellum ATCC 27405]
          Length = 628

 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 77/486 (15%), Positives = 151/486 (31%), Gaps = 116/486 (23%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL---ESYIA 105
           E  R    EK+       I  E+F ++  ++           +     + N+   + YI 
Sbjct: 176 EIYRYEYVEKHKDKAVQEIR-EAFKEIKDHA-------DYVAILDNGEKANIFSADEYIK 227

Query: 106 SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR- 164
             + N         + + +  L+    L  I  +          +   V+  +++ L+R 
Sbjct: 228 LENPNI--------YIAVLKALQD---LGTIIIDGVERPATLRDLTGDVLGRVFDVLLRG 276

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLL-----DPDDALFKESPG---MIRTLYDPTCGT 216
           +F  E   G   ++TPR V   A  ++L     D    L  + P        + D  CG+
Sbjct: 277 KF--ENKGGMGIYLTPRQVTEAAAEMVLHDLTKDGAAKLIAKDPKTGIPTLRIGDLCCGS 334

Query: 217 GGFLTDAMNHVADCGSHH------------KIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           GGFL   +  +     +             +        G +  P         M +   
Sbjct: 335 GGFLIKMLQKIEHYLLNKLTGDKKQYEELFEQMKEHCFIGADNAPGMVLKARINMALHGA 394

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-------------------- 304
              P           ++L         F   L+NPPF K                     
Sbjct: 395 PKCPIFQTR------NSLMNTRLKPGTFDAILTNPPFSKTGISKTIKKGKTTVENPEGAE 448

Query: 305 -WEKDKDAVEKEHKN-----------GELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
             +     ++++ +N               R         D ++LF+      L+     
Sbjct: 449 IIKYYSSDIDEDGQNRMSPYGLSLGSKPDSRGKWKEVNSVDPAVLFIDRNLQLLKP---- 504

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL------------IEAIVALPTDLFF- 399
           GG   IV+    L N    SG+  +R +++                ++A+++LP   F  
Sbjct: 505 GGLLMIVVPDGILSN----SGDKYVREYIMGKKNPVTGEFEGGKAILKAVISLPQVTFAL 560

Query: 400 -RTNIATYLWILSNRK-TEERRGKVQLINATDLWTSIR-----NEGKKRRIINDDQRRQI 452
                 T L  L  ++   E++G V +  A ++  +++       G     +      +I
Sbjct: 561 SGAGAKTSLLYLKKKEHPGEKQGPVFMAVADEVGFTVKQNVEVQLGDDHNDLL-----KI 615

Query: 453 LDIYVS 458
           ++ Y  
Sbjct: 616 VEAYKK 621


>gi|298241943|ref|ZP_06965750.1| restriction modification system DNA specificity domain protein
           [Ktedonobacter racemifer DSM 44963]
 gi|297554997|gb|EFH88861.1| restriction modification system DNA specificity domain protein
           [Ktedonobacter racemifer DSM 44963]
          Length = 790

 Score = 88.5 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 91/548 (16%), Positives = 170/548 (31%), Gaps = 81/548 (14%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES-YIASF-SDNAKAIF 115
           +      + +  E  ++  G        +  S L +   + N+   Y  +F + + K I 
Sbjct: 177 ELNRVLIAKLQDERVIQTGG-----PRRFRASNLSNHQIKANIAQLYKEAFINLDGKPIE 231

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E   F S          L  I K      L P  V D +  +++  +   F      G  
Sbjct: 232 EKPWFFS-------PHALSNIVKILEPYALLP--VTDSIRGHLFWQMFAEFMRMNETG-- 280

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC----- 230
            F TP  +      L                + + DP CGTG  L  A+  +        
Sbjct: 281 -FTTPVPLADFLVRL----------TQLREGQRIIDPACGTGLLLIVALEIIKAQVATNH 329

Query: 231 -----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
                    +  P  V  G E+E E   +    +++  +   P   ++ N      L   
Sbjct: 330 LSSQDNPSLQKKPQYVIAGIEIEAEVAELAATNLVLNGI--SPSAVINANALDKHNLRYS 387

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 +   L +PP G   + +    + E   G   R            MLF+    + 
Sbjct: 388 GVQLSTYDTVLLHPPMGLAPKNENILSQYEI-IGNNKRPTL--------EMLFIELAIDL 438

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTN 402
           L      GG    ++  S L +    S     R WLL+  L  AI++LP +       + 
Sbjct: 439 LRP----GGLLVSLVPDSFLSSPSYQSA----RSWLLQRTLPRAIISLPPETLMPIGHSG 490

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
             T L +      +  + +V + +   +  +   +     ++ D       + Y  R + 
Sbjct: 491 KTTVLLLEKKNIQQNHQDRVLIADVQSVGYNRFGQPTGENVLPDLLES--FETYCKRGDI 548

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS------FWL 516
           + S       F   +I+V      +  L    L   + D T   L    +          
Sbjct: 549 ENS-------FSNEKIRVWT--TSTNDLSSKRLDIGQFDPTSTDLVYTLKHGQYPFVKLN 599

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKS---FIVAFINAFGRKDPRADP 573
           +I+  +  + + Y    +     I++   + L +    +    +  F NA        D 
Sbjct: 600 EIVNIIGGRNFKYVEYAANTAIVIQAGAVRDLTLDLLNAPSISVKDFDNAKNAHVEFGDI 659

Query: 574 VTDVNGEW 581
           +    G +
Sbjct: 660 LVTTTGAY 667


>gi|269126149|ref|YP_003299519.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
 gi|268311107|gb|ACY97481.1| N-6 DNA methylase [Thermomonospora curvata DSM 43183]
          Length = 691

 Score = 88.1 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 94/284 (33%), Gaps = 48/284 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++E L  R+          +  P  VV L + L           +   + T+ DP CG+G
Sbjct: 167 VFEFLRERY--LSRHRRRVYEAPPQVVTLVSEL-----------ADSRVHTVLDPACGSG 213

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            FL   +          +  P     GQE +     +    + +R             I+
Sbjct: 214 AFLLGMLE---------RPDPPRRLLGQEADEAVARLTAVRLALR--------TPGARIR 256

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G  L  D F        ++ PPF  +    +       +     R+  G P  S   + 
Sbjct: 257 LGDGLRADRFPDAAADLVVTCPPFNDRNWGHE-------ELATDPRWRYGPPPRSCSELA 309

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           +  H   +       GG   +++    L           IR  LL    + AI+ALP   
Sbjct: 310 WAQHALARCRP----GGLVVLLM----LPAAALRRAGRRIRAELLRRGALRAIIALPPQ- 360

Query: 398 FFRTNIATYLWIL-SNRKTEERRGKVQLINATDLWTSIRNEGKK 440
                +A ++W+L   R  +   G+V +++ + +         K
Sbjct: 361 -AVPGMACHVWVLRRPRPGDRPPGQVLMVDVSGIGDDFAAPAAK 403


>gi|256374368|ref|YP_003098028.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
 gi|255918671|gb|ACU34182.1| N-6 DNA methylase [Actinosynnema mirum DSM 43827]
          Length = 712

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 85/263 (32%), Gaps = 53/263 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
              A    TP  +      L+           P    T++DP CG G  L     H+A  
Sbjct: 203 GRDAG-HRTP-PLARCLVELV----------DPRPGETVHDPCCGDGRLLVAVAGHLAPE 250

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        G+  +  +  VC A + IR + +D R               D F  +
Sbjct: 251 SPGAGA-----LSGRAADEVSSRVCAALLGIRGMSADLRAHG------------DGFRCE 293

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   +++PP        +     E      G             + ++ H   +L    
Sbjct: 294 LFDVVVAHPPVTLAPPGGEGPPLGEPSARGAG-------------LAWVQHALRELAP-- 338

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGRAA+++  S          +  +RR L+E  ++E +VALP       +    +W+L
Sbjct: 339 --GGRAALLVPGST--ASGQAGRDVAVRRALVEAGVVECVVALP-----GRSSRAVVWVL 389

Query: 411 SNRKTEERRGKVQLINATDLWTS 433
                     +V  ++A      
Sbjct: 390 RAPGAGPVDPEVLFVDAAGGGEP 412


>gi|182419440|ref|ZP_02950692.1| N-6 DNA methylase [Clostridium butyricum 5521]
 gi|237666688|ref|ZP_04526673.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376771|gb|EDT74343.1| N-6 DNA methylase [Clostridium butyricum 5521]
 gi|237657887|gb|EEP55442.1| N-6 DNA methylase [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 642

 Score = 87.7 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 123/391 (31%), Gaps = 57/391 (14%)

Query: 81  YNTSEYSLSTLGS--TNTRNNLESYIASFSDNAK--AIFEDFDFSST-IARLEKAGLLYK 135
           Y  S +S+           + L + +    +  K   + +    +   + +L  +  +  
Sbjct: 195 YFNSLWSMMDEKQIRAAIESTLTNLLDGSENKTKKVELLQKNVLNDQKVKKLNTSNWIKI 254

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           +      I  + D         +    I               TP  +      L     
Sbjct: 255 LDTILMDIYKYIDADSSEGQDILNLFFIAFNKYTGKADKNQAFTPDHITDFMCRLTEVD- 313

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAM----------NHVADCGSHHKIPPILVPHGQ 245
                      + + D TCG+G FL  AM              +     KI      +G 
Sbjct: 314 ---------RTKVVLDATCGSGSFLVQAMVKELADCRRGKTEDETKKLQKIVKEEHIYGI 364

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKK 304
           E+E + + +    MLI         D + NI+  S    +D          L NPP+  K
Sbjct: 365 EVEEKAYGLATTNMLIHG-------DGNSNIKFKSCFDCEDFIKQANPDVILMNPPYNAK 417

Query: 305 W----EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG------G 354
                +K K     + K+G+        P      + FL  +  K+              
Sbjct: 418 PIGIPKKYKTNWTAKAKDGKED------PTKGLVFIHFLSDVIQKMNEEREQNNQPKKTV 471

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNR 413
           + A++L  S        S  ++ +  +LEN+ +EA+  LP ++F+   +      + +  
Sbjct: 472 KLAVLLPVSAAI--GTSSIITDEKIAMLENNTLEAVFTLPNEIFYPGASACACCMLFTLG 529

Query: 414 KT---EERRGKVQLIN--ATDLWTSIRNEGK 439
           +     + + ++        D +   +N G+
Sbjct: 530 QPHIKADGQSRITFFGYCKEDGFKKKKNLGR 560


>gi|322691181|ref|YP_004220751.1| hypothetical protein BLLJ_0992 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456037|dbj|BAJ66659.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 600

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 135/456 (29%), Gaps = 87/456 (19%)

Query: 93  STNTRNNL-ESYIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICK---NFSGIELHP 147
            T   + L +S IAS   NAK  I  +      +   +    +          S      
Sbjct: 192 HTAIHSTLAKSLIASRKQNAKIDILLEEYSDIKMNTTDNQKAINDFIDWVVEISECVNSN 251

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +   + VM   +    R    +    +    TP  +      +L    D           
Sbjct: 252 EWRGEDVMGIFFNEFNRY---KKKSESGQIFTPEHITDFIYKILEVNMDD---------- 298

Query: 208 TLYDPTCGTGGFLTDAM-NHVADCG----SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
            + D TCG+GGFL  AM N + + G               +G E + E +A+  A MLI 
Sbjct: 299 CVLDATCGSGGFLVKAMANMIREAGGMETKKAGEIKSKQLYGIEFDREIYALACANMLIH 358

Query: 263 RLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                  +D   N++Q  T    + +    K     L NPP+             E+K G
Sbjct: 359 -------KDGKTNLEQMDTRTDAANEWMQSKPITKVLMNPPY-------------ENKYG 398

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                               M +   +        + A +L    L             +
Sbjct: 399 C-------------------MTIVENVMDSVPAHTQCAFILPDKKLEKASKAQM-----K 434

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            +L+N  +  ++ LP DLFF   + T +++      ++ +              +     
Sbjct: 435 RILKNHRLRKVIKLPEDLFFGVGVTTSIFVFEAGVGQDGKE---FFACYMESDGLATVKN 491

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK---VLRPLRMSFILDKTGLA 496
           K R           D+Y      + +  +D             V     +S+ + +    
Sbjct: 492 KGRH----------DVYGKWAAIE-AHWVDVVEKQSGDDTCQWVNPAEHLSYQMPQKPFE 540

Query: 497 RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
             E D     +  L     +D  +   + +    ++
Sbjct: 541 IFEEDFRKTAMDYLMFRQGIDAKEFGEKLLDTAMYS 576


>gi|310828498|ref|YP_003960855.1| hypothetical protein ELI_2923 [Eubacterium limosum KIST612]
 gi|308740232|gb|ADO37892.1| hypothetical protein ELI_2923 [Eubacterium limosum KIST612]
          Length = 600

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 136/457 (29%), Gaps = 89/457 (19%)

Query: 93  STNTRNNL-ESYIASFSDNAK-AIF----EDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
            T   + L +S I S   NAK  I      D   ++T  +      +  + +  S     
Sbjct: 192 HTAIHSTLSKSLIDSRKQNAKIDILLEEYSDIKMNTTDNQQAINDFIDWVVE-ISECVNS 250

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +   + VM   +    R    +    A    TP  +      +L    +          
Sbjct: 251 NEWRGEDVMGIFFNEFNRY---KKKSEAGQVFTPEHITDFMYKILEVNMND--------- 298

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-----ILVPHGQELEPETHAVCVAGMLI 261
             + D TCG+GGFL  AM ++       K            +G E + E +A+  A MLI
Sbjct: 299 -CILDATCGSGGFLVKAMANMIRESGGMKTKKASEIKSKQLYGIEFDREIYALACANMLI 357

Query: 262 RRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                   +D   N++Q    ++   +    K     L NPP+             E+K 
Sbjct: 358 H-------KDGKTNLEQMDARTEAACEWMQSKPITKVLMNPPY-------------ENKY 397

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           G                    M +   +        + A +L    L             
Sbjct: 398 GC-------------------MTIVENVLDSVPTHTQCAFILPDKKLEKASKAQM----- 433

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + +L+N  +  ++ LP DLFF   I T +++  +   +  +              +    
Sbjct: 434 KRILKNHRLRKVIKLPEDLFFGVGITTSIFVFESGVGQGGKE---FFACYMESDGLATVK 490

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK---VLRPLRMSFILDKTGL 495
            K R           DIY    + + S  +D             V     +S+ + +   
Sbjct: 491 NKGRH----------DIYGKWASIE-SHWIDVVVKQSGDDTCQWVDPSEHLSYQMPQKPF 539

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWA 532
              E D     L  L     +D      +      ++
Sbjct: 540 EIFEEDFKKTALDYLMFQKGVDAKAFSEKLTDTAMYS 576


>gi|257790143|ref|YP_003180749.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
 gi|257474040|gb|ACV54360.1| N-6 DNA methylase [Eggerthella lenta DSM 2243]
          Length = 764

 Score = 87.3 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 129/431 (29%), Gaps = 46/431 (10%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           L+R    +EP    V E  +    S++   E     A  + +         L        
Sbjct: 355 LKRF---VEPAPHEVLEALVQDVRSDLAHVEGVAASAFDAAWEVLPLLFVRLVDDGAAWA 411

Query: 100 LESYIASFSDNAKAIFEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
                           E F      ++ L    L        S   +       R+    
Sbjct: 412 RVIAAEDTPAQIDVELERFAAQDEGLSFLSGFALSASSLDESSQRRMIDRIGDLRLDGYN 471

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E L  R+ +  +E   D   P  V  L   + L                 YDP  G G 
Sbjct: 472 GELL--RWLALGNEPEPDAPCPAAVSDLMARIALA--------FNPSAAQAYDPCLGVGD 521

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L      +       +     V     L  +  A C         E     D +  +  
Sbjct: 522 TLAA----LRRFAPTIRCGGQTVRFPDALVAKLAARC---------EGWFFDDGA--LAV 566

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           GS L +D   GK     +S  P       ++        +    R+  G+P  +  ++ +
Sbjct: 567 GSALVEDELAGKLADVIVSVLP------PNQGEWTDHAPDPSDTRWAFGVPPRNKANLAW 620

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +             GG A +  S++ L    +   E  +R  L+E+  + A+V+LP  LF
Sbjct: 621 VQQAFAHRAP----GGIAVLAASNAVLH--ESRGCEPGVRAALIESGCVRAVVSLPGGLF 674

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               +   + +L ++++     +   +NA +      N  +  R +  D R +++     
Sbjct: 675 SDGRVPFSIIVLGDKRSVPF--ETLFVNALEYGVP--NVTRAGRGLPMDARDRVVSTVER 730

Query: 459 RENGKFSRMLD 469
                 S  + 
Sbjct: 731 WIATGSSVFIP 741


>gi|256545587|ref|ZP_05472947.1| type I restriction-modification system, M subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256398798|gb|EEU12415.1| type I restriction-modification system, M subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 674

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 82/416 (19%), Positives = 126/416 (30%), Gaps = 101/416 (24%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIAR 126
            +         FY TSE   +  G    +N +E          K   IFE  D      R
Sbjct: 207 EDERDIPKPLEFYATSEERSNGDGQLTIKNRIEKIFERVKKEKKNAKIFEPNDSIKLHPR 266

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
                 L  I        L    +   +    YE ++  +   +     +F TPR+V+ +
Sbjct: 267 -----TLSYIVSELQKYSLLNTRID--IKGKAYEEIVGAY---LRGDRGEFFTPRNVMQM 316

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM---------NHVADCGSHHKIP 237
              ++          +P +   + D +CGTGGF+  AM             D G   +  
Sbjct: 317 VVEMI----------NPTIDEKVLDSSCGTGGFVVTAMTHAMKQLRSEFTKDIGKDKENW 366

Query: 238 PIL---------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                                G ++ P+        M++         D S NI Q ++L
Sbjct: 367 NDYEKKAFQDKISDMAKNNYFGFDINPDLVKATKMNMVMNN-------DGSGNILQTNSL 419

Query: 283 SKDLFTGKR------------------------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                                            F   ++NPPFG K      A+  + + 
Sbjct: 420 LPPHEWTDDFKTRLASALQIDKKSIINHYDIGFFDVIVTNPPFGSKIPIKDHAILSQFEL 479

Query: 319 GELGRFGPGLPKISDGSM------------LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               R      K    +M            LF+      L+     GGR  IVL  + L 
Sbjct: 480 ---ARIWNQDKKTGKWTMTDRYQSSVSPEILFIERCYQFLKP----GGRMGIVLPDALL- 531

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT-NIATYLWILSNRKTEERRGK 421
                 G   IR WL++N  I A + L  D F       T + IL  +  EE   +
Sbjct: 532 ---GSPGTGYIREWLIKNTKIIASIDLHEDTFQPRNGTQTSVLILQKKTKEEISKE 584


>gi|227485430|ref|ZP_03915746.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236560|gb|EEI86575.1| N-6 DNA methylase [Anaerococcus lactolyticus ATCC 51172]
          Length = 642

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 125/387 (32%), Gaps = 44/387 (11%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            +++     G   ID ++  ++  Y  YN     + ++  T     LE+ +    + AK 
Sbjct: 177 YIKDVVKQRGFITIDDKAVEELRDYWSYNKPSGIIGSIKET-----LENLLDGSDNKAKK 231

Query: 114 I--FEDFDFSST-IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           I   +    ++  +  L+    +  +      I  + D   D     +    I       
Sbjct: 232 IELLQKNVLNNQKVKALDIKDWVGILSYILENIYAYIDEDSDEGQDILNLFFIAFNKYTG 291

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------ 224
            +      TP  +      +                + ++D  CG+G FL  AM      
Sbjct: 292 KDDKNQAFTPDHITEFMCRITEVD----------RYKRVFDGACGSGSFLVQAMVKELAD 341

Query: 225 ---NHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                + D       +       +G E+E     +    MLI         D + NI+  
Sbjct: 342 CDKARITDAEKQILKENIKKNNIYGVEIEETAFGLSTTNMLIHG-------DGNSNIKLA 394

Query: 280 STL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           S   S++ F        L NPP+  K        +   K       G   P        F
Sbjct: 395 SLFDSEEFFIEANPDIVLMNPPYNAKPRTIPGKYKIGWK--PNQINGKEDPSKGFSFAEF 452

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI----RRWLLENDLIEAIVALP 394
           +     K+ +     G+A   +  + L    A  G + I    +  +LE++ +EA+  LP
Sbjct: 453 ISDCVKKININRVNDGKAKKEVKLAILLPVSAAIGSNNILKSAKEKMLEDNTLEAVFTLP 512

Query: 395 TDLFF-RTNIATYLWILSNRKTEERRG 420
            ++F+   +++    + +  +      
Sbjct: 513 NEVFYPGASVSACCMVFTLGRPHISAD 539


>gi|332367332|gb|EGJ45067.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus sanguinis SK1059]
          Length = 693

 Score = 87.0 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 86/534 (16%), Positives = 170/534 (31%), Gaps = 78/534 (14%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             L + L            E  ++         ++V      +   +  ++  L      
Sbjct: 196 LFLFKYLSDIGVLNGENSFEYIVSLYEKEGYSTAYVLGK---YLEGARETMVKLFPKGMD 252

Query: 98  NNLESYIASFSDNA-KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               S I     +  +    +F        + K+ +L    + +         +     S
Sbjct: 253 G--TSIINGKVFHIERDEQNEFVSVDNTDTVFKSVILE--FEKYDKKYGKFLNISKDFKS 308

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++E  ++   S+       F TP  +V    +++                T+ DP CG 
Sbjct: 309 KLFETFMK--NSDDKSDMGQFFTPLKIVDEMVSMVDI----------SEGMTICDPACGV 356

Query: 217 GGFLTDA-MNHVADCGSHHKIPP--ILVPHGQEL-----EPETHAVCVAGMLIRRLESDP 268
           G FL +A    + D  S+ K      +   G +      +  T  +  A  LI   E   
Sbjct: 357 GKFLLEAVEKRIEDSYSYSKGKLTSKIRFFGYDKMMSEKDDITIILAKANTLIYFSELFQ 416

Query: 269 RRDLSKNIQQ-GSTLSKDLF-------------TGKRFHYCLSNPPFGKKWE-KDKDAVE 313
           + +  K++Q    TL  D F                R+   L+NPP+ +  E  +     
Sbjct: 417 QNNSFKDVQAIAKTLLNDSFYLHKSMLGTLENLEENRYDLILANPPYYQSKEMSELAKAT 476

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
             +K G  G              LFL  +   ++     GG A IVL      N      
Sbjct: 477 DIYKYGGSGVEA-----------LFLEWIMRSVKH----GGVANIVLPDGIFSNHANKKL 521

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           + +++        I+A+++LP + FF T   TY+  +  +   E    +  +    ++T 
Sbjct: 522 KEKLKELF----FIDALISLPVNAFFNTPKKTYILTIRKKTENEIENNI--VQDYPVFT- 574

Query: 434 IRNEGKKRRIINDDQRRQILDIYV-SRENGK--FSRMLDYRTFGYRRIKVLRPLRMSFIL 490
                            + LD+Y    E      + +       ++    L+    SF+L
Sbjct: 575 ----------YIAGSIGETLDVYRFDSEENDLKQAVIKYNYYRQFQDKNNLQEPIKSFLL 624

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           D + L  L  +    K S + +++W +  K  +              +++  + 
Sbjct: 625 DDSRLKLLSIEELDSKKSWIIENWWSEEEKIAIGLKKEKQVVSIDEFQAMIDDM 678


>gi|326441402|ref|ZP_08216136.1| type II restriction-modification system DNA adenine-specific
           methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 730

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           + G +L  D F G      L++PPF ++    +       +     R+  GLP  ++  +
Sbjct: 260 RSGDSLRADAFPGAEADAVLTHPPFNERHWGHE-------ELAYDPRWEYGLPARTESEL 312

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H   +L      GG A +++  +        SG   +R  LL    + A+VALP  
Sbjct: 313 AWVQHALARLRP----GGTAVVLMPPAAASR---RSG-RRVRAGLLRRGALRAVVALPAG 364

Query: 397 LFFRTNIATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                 I  +LW+L   +        V  ++  +L  S  + G+ R       R  +LD 
Sbjct: 365 AAPPYGIPLHLWVLRRPEPGRTPAPDVLFVDTAEL--SGASGGRDRLDWT-AVRNAVLDA 421

Query: 456 YVSRE 460
           +    
Sbjct: 422 WRPFA 426


>gi|294813056|ref|ZP_06771699.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325655|gb|EFG07298.1| Putative type II restriction-modification system DNA
           adenine-specific methylase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 795

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 72/185 (38%), Gaps = 19/185 (10%)

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           + G +L  D F G      L++PPF ++    +       +     R+  GLP  ++  +
Sbjct: 325 RSGDSLRADAFPGAEADAVLTHPPFNERHWGHE-------ELAYDPRWEYGLPARTESEL 377

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            ++ H   +L      GG A +++  +        SG   +R  LL    + A+VALP  
Sbjct: 378 AWVQHALARLRP----GGTAVVLMPPAAASR---RSG-RRVRAGLLRRGALRAVVALPAG 429

Query: 397 LFFRTNIATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                 I  +LW+L   +        V  ++  +L  S  + G+ R       R  +LD 
Sbjct: 430 AAPPYGIPLHLWVLRRPEPGRTPAPDVLFVDTAEL--SGASGGRDRLDWT-AVRNAVLDA 486

Query: 456 YVSRE 460
           +    
Sbjct: 487 WRPFA 491


>gi|121534426|ref|ZP_01666249.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
 gi|121306919|gb|EAX47838.1| N-6 DNA methylase [Thermosinus carboxydivorans Nor1]
          Length = 664

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 92/278 (33%), Gaps = 47/278 (16%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              + ++  IYE       +        + TP  ++    +  ++               
Sbjct: 91  RNKEFLLGEIYER-----TAMGRRAQGRYYTPAKIIDFIMSWTVEECAVTLN----PYVR 141

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEP 249
           + DP CG G FL  A + +                         H+        G +++ 
Sbjct: 142 VLDPACGCGNFLVKAYDVLRQKFWDARPILQTRYPEIDWSDDGIHRHIIRYNLWGADIDG 201

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---------LFTGKRFHYCLSNPP 300
               +    +L++    +  RDL  NI+Q  +L +           F    + Y + NPP
Sbjct: 202 TAAKIAALSLLLK--RPEASRDLIPNIRQCDSLRRPDENSGSSDKTFWAAAYDYVVGNPP 259

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +     +   A++  +       F            LF+      L+     GGR   ++
Sbjct: 260 YLSFGLRGGQALDPGYGKYLRQAFVACAEYKISYYALFMQRGIELLKP----GGRLGFIV 315

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             S L     G   S++RR+LL+   ++AIV +   +F
Sbjct: 316 PDSFL----LGRYFSKLRRYLLDYTAVKAIVHIAAPVF 349


>gi|315639332|ref|ZP_07894494.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315480658|gb|EFU71300.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 463

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 126/408 (30%), Gaps = 76/408 (18%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMN--------HVADCGSHHKIPPILVPHGQELEPETHAVC 255
                + DPTCG+G FLT+AM          + +     K        G E       + 
Sbjct: 8   SKDSEILDPTCGSGTFLTNAMANMFNEIDPKLENLHETQKNIKQNRLIGIETNEFNATLA 67

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
              M++         D +  I       +       ++  L NPPF +            
Sbjct: 68  GINMMLHG-------DGASQIYNADCFERLPSLQNMYNRVLMNPPFAQ------------ 108

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                           SD  + F+      +      G  A IV  S           E+
Sbjct: 109 ----------------SDIELKFVYETLYYMRDD---GFLATIVPKSCVSGT-----IEA 144

Query: 376 EIR--RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWT 432
            +R    + +   ++A+++LPT+LF+     T + +L   KT  +  K  LIN   D + 
Sbjct: 145 NVRYLSKIFKIANLKAVISLPTNLFYPVGANTCIIVL--HKTNIKDNKTILINCLNDGFE 202

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI--- 489
            +      +    D  + +IL  Y+               F   R  +   L+ +     
Sbjct: 203 VVNKARICKNDEWDIIKNEILKAYLK------------NDFTKNRAIIKTDLQANDELLF 250

Query: 490 --LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI-YPYGWAESFVKESIKSNEAK 546
                   A ++ ++  R +  +  +  L   +     +     W  +F   SI     K
Sbjct: 251 EAYSSHRNAMIQEEVYTRYIREVVSAKVLCGFELHKNTLKKNAIWDTAFEDFSISDLIIK 310

Query: 547 TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTE-YENV 593
             K +  KS      N +  ++     +   +   +    L +  E V
Sbjct: 311 IGKGREKKSIDRKIENKYP-QNGIPLIIAKKDNNGVGGAKLRDEIEQV 357


>gi|71897760|ref|ZP_00679986.1| Helix-turn-helix motif:Type I restriction-modification system, M
           subunit [Xylella fastidiosa Ann-1]
 gi|71732315|gb|EAO34369.1| Helix-turn-helix motif:Type I restriction-modification system, M
           subunit [Xylella fastidiosa Ann-1]
          Length = 404

 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 36/210 (17%)

Query: 36  LPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL---- 91
           L    L+RL    +   + + E+Y     +    ES    +   FY   +   + +    
Sbjct: 198 LTLLFLKRLSDVFDDEITRLAEEYGDCATALEIAES--DHSLLRFYLPPQARWAVISGRK 255

Query: 92  -------------GSTNTRNNLES---YIASFSDNAKAIFEDFDF--SSTIARLEKAGLL 133
                           +   +L      +   +     + +  DF       R      L
Sbjct: 256 SFNWPLDEDDRPTAPRDIGEHLTKDSRAVVKQNPTLSGVIDIVDFAVERNSERDINPAKL 315

Query: 134 YKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
             + + FS          V    +   Y +L+R+F     + A +F TP     L   +L
Sbjct: 316 RGVVETFSDPRYRLGLAHVQPDFLGRAYAYLLRKFTEGSGQSAGEFFTPTKAGFLMAHIL 375

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
                      P      +D  C +GG L 
Sbjct: 376 ----------RPKSGDACHDYACDSGGLLI 395


>gi|298375963|ref|ZP_06985919.1| N-6 DNA methylase [Bacteroides sp. 3_1_19]
 gi|298267000|gb|EFI08657.1| N-6 DNA methylase [Bacteroides sp. 3_1_19]
          Length = 837

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 107/430 (24%), Gaps = 120/430 (27%)

Query: 59  YLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
           Y       +       +    +YN     +  L +   +      +             F
Sbjct: 186 YERDAKEELVYSKDKFIKDELYYNGEVDYIQHLFNEVKKAYSTDGL-------------F 232

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           D    I    ++ LL  I +  S +EL+     D +    +E  + +           F 
Sbjct: 233 DSEDKIRIRRESFLL--ILEELSSVELY--DTSDDIKGIAFELFLGK---TFRGELGQFF 285

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR +V+    +L   +             + DP CG+GGFL  A  HV +         
Sbjct: 286 TPRTIVNYMVEVLNVKEGD----------KVCDPCCGSGGFLIKAFEHVQNQIDQDIHKQ 335

Query: 239 ---------------------------------------ILVPHGQELEPETHAVCVAGM 259
                                                       G +            M
Sbjct: 336 ITILMDNQSLSDTEKQYKINTLLRECDKTKEGSRYHKLCHDYFFGVDANARMARTSKMNM 395

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK----- 314
           ++              I  G            F   L NPPFG   EKD           
Sbjct: 396 IMHGDGHVGVYLHDGLINVG------GVYDNNFDVILINPPFGAHVEKDMRITSSDIPTD 449

Query: 315 ------EHKNGELGRFGPGLPKISDGS------------------------MLFLMHLAN 344
                 E   G         P                              +LF+    N
Sbjct: 450 RERALCEELFGSEYISKVYTPIKEYAQEIGKDKKIGKRILELYQINNNSTEILFIERCIN 509

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN-- 402
            L+     G RA IVL    L N         +R+++     I  I ++P D+F  +   
Sbjct: 510 LLKP----GKRAGIVLPEGVLDNPALD----RVRKFIESRAKILNITSIPADVFLSSGAN 561

Query: 403 IATYLWILSN 412
           I   L  +  
Sbjct: 562 IKPSLVFIEK 571


>gi|332686988|ref|YP_004456762.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
 gi|332370997|dbj|BAK21953.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
          Length = 139

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG- 289
             +     ++   GQE +   + +    +++  +E +       NI    +L  D   G 
Sbjct: 1   MKNSSKRGMVKYFGQEKDATPYRLVRMNLMMHGIEYNDI-----NINHADSLESDWPDGV 55

Query: 290 -------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMH 341
                  + F   ++NPP+   W           +  +  R+   G+   +     FL+H
Sbjct: 56  VDGKDNPRMFSAVMANPPYSAHW--------NNKEREDDPRWREYGIAPKTKADYAFLLH 107

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
               LE      GR AI+L    LF G    
Sbjct: 108 CLYHLEDR----GRMAIILPHGVLFRGAVKK 134


>gi|261884854|ref|ZP_06008893.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 156

 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            +IR+ L++ +L++AI+ LP +LF+ T I   + I    +T      V  I+A+  +   
Sbjct: 1   GKIRQKLIDQNLLDAIIGLPANLFYGTGIPACIMIFKKNRT---NNDVLFIDASSEFYKD 57

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           +N    +  +ND    +I   Y  R +      L    
Sbjct: 58  KN----QNRLNDALIAKIAXTYNDRISVDKYAYLATIE 91


>gi|329936983|ref|ZP_08286612.1| N-methyltransferase [Streptomyces griseoaurantiacus M045]
 gi|329303590|gb|EGG47475.1| N-methyltransferase [Streptomyces griseoaurantiacus M045]
          Length = 569

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 92/287 (32%), Gaps = 55/287 (19%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES---PGMIRTL------- 209
           E ++RR  +   +      +PR+VV      L D       +    P ++R +       
Sbjct: 129 EEVVRRVRALAGDT-----SPREVVTGLVERLTDSVRRAGSDQITSPRVVRAVSHYAGEV 183

Query: 210 ------YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                 +DP CG G  L                      +GQE +  +            
Sbjct: 184 ASDAALFDPACGIGTLLLAV-----------GPQRGPRRYGQENDAHSARFAR------- 225

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L +         I  G +L +D     +    + +PP G              +     R
Sbjct: 226 LRAQLTGRGGVEIVTGDSLREDRLPELKADLVVCDPPVGISDWG-------REELLLDSR 278

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +  G P  ++G + +L H           GGR  +V+S+S  +          IR  L+ 
Sbjct: 279 WELGTPSRAEGELAWLQHAYAHTAP----GGRVLMVMSASVAYRKAGR----RIRAELVR 330

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATD 429
             ++  + ALP        +  +LW L       +    V++++ T 
Sbjct: 331 RGVLTQVTALPPGTAVSHALPVHLWHLRRPLSPGDAVTSVRMVDLTS 377


>gi|14520377|ref|NP_125852.1| site specific DNA-methyltransferase [Pyrococcus abyssi GE5]
 gi|5457592|emb|CAB49083.1| Site specific DNA-methyltransferase [Pyrococcus abyssi GE5]
          Length = 464

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 50/256 (19%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  V        +   +              DP CG G FL     ++ + G
Sbjct: 14  KVLGQFFTPPKVAKFIVEFAIAHLENRVTN------LACDPACGNGVFL----KYLKEKG 63

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +G +++P              ++    +++  +I     L      G+ 
Sbjct: 64  FK--------IYGFDIDPT-------------VKDRAPKEIKDSIIITDGLLDLPHEGE- 101

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-SMLFLMHLANKLELPP 350
           +   + NPPF  K+ +  D          L +F  G  + S    +LFL           
Sbjct: 102 YDVVVGNPPFSAKYGRITD-------KKILSKFELGRERKSQAIEILFLEKFFRC----A 150

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG   ++L      N         +R ++L N  I AIVALP ++F  T   T +   
Sbjct: 151 REGGIIGVILPFGIFSNTNL----KYVRDFILRNSQILAIVALPRNVFTGTTARTAILF- 205

Query: 411 SNRKTEERRGKVQLIN 426
             +K    +G+V + N
Sbjct: 206 -AKKGGPHKGEVLMAN 220


>gi|86741365|ref|YP_481765.1| N-6 DNA methylase [Frankia sp. CcI3]
 gi|86568227|gb|ABD12036.1| N-6 DNA methylase [Frankia sp. CcI3]
          Length = 746

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/262 (18%), Positives = 85/262 (32%), Gaps = 44/262 (16%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                + +++ L  R+    S    +   PR V  L   L                 T+ 
Sbjct: 182 DRHGHAELFDALRARYREVCSRQVAE--PPRAVGELMVTLAGL-------RGRSGAATVL 232

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           DP CG GG L  A                    GQ++ P    V   G+L+R  +     
Sbjct: 233 DPACGIGGLLEAAR-----------AAGAGRLLGQDVNPTMARVSAVGLLLRGGD----- 276

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I  G +L    F G+R    L  PPFG++     + +           +  G+P 
Sbjct: 277 ---ARIVAGDSLLAGTFAGERADAVLCAPPFGQRSWGYDELLGAPW-------WRHGVPP 326

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             +  + ++ +           G +  +++ ++           +     LL    + A+
Sbjct: 327 RGEPELAWVQYCLAH----ARDGAQVLVIMPAAAASRRAGRRIRAN----LLRAGELRAV 378

Query: 391 VALPTDLFFRTNIATYLWILSN 412
           + LP  LF     A  LW+L  
Sbjct: 379 LGLPPGLF-PAGSAPDLWVLRR 399


>gi|312601569|gb|ADQ90824.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168]
          Length = 785

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/498 (14%), Positives = 155/498 (31%), Gaps = 107/498 (21%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            NL++Y+ + +     IFE  +    I+ +            ++ I +         + N
Sbjct: 211 QNLQNYLYNSTFKTVDIFELNNIVELISNV------------YNLINISHKNYKGHDIMN 258

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +  + R++ S  ++   +  TP  +  L   L+                 + DPTCG+G
Sbjct: 259 AFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGSG 309

Query: 218 GFLTDAMNHV-------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            FLT+AM ++                          K        G EL      +    
Sbjct: 310 TFLTNAMANMFQDVHSFFKSKKLSKEKEEQYSNQACKDIKNNKLIGIELNEFNATLAGIN 369

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+         D S NI Q     +      ++   L NPPF +K              
Sbjct: 370 MLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES------------ 410

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            + F+      L+      G+ A ++  S L      + E   +
Sbjct: 411 ----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLKK 450

Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
            +++    +  I++LP D+F     + T + +L     E+ + K+Q              
Sbjct: 451 IFMMAK--VSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIK-KIQ------------KL 495

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSR----MLDYRTFGYRRIKVLRPLRMSFILDKT 493
             K++ I +  +   L   +   +  F            F  +  ++ + L+  F   + 
Sbjct: 496 ASKKKEIEEHTQNIFL---IDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQA 552

Query: 494 --GLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPYG-WAESFVKESIKSNEAKTL 548
                R + ++++ + +        + +  K M +                 K N +K  
Sbjct: 553 LKRNLRFDEELSFERFNTNRTFDIEESVFKKYMKENFASKVLSGIENQVILKKKNLSKYK 612

Query: 549 KVKASKSFIVAFINAFGR 566
            +K     +   ++   +
Sbjct: 613 NIKFKFFAVDKILDFISK 630


>gi|332669269|ref|YP_004452277.1| N-6 DNA methylase [Cellulomonas fimi ATCC 484]
 gi|332338307|gb|AEE44890.1| N-6 DNA methylase [Cellulomonas fimi ATCC 484]
          Length = 633

 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 89/293 (30%), Gaps = 50/293 (17%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           ++     P  V+   ++ ++      V      F TPR +V    A++           P
Sbjct: 104 DVELSDAPAHVVGEAFQAVVG---PRVRGEKGQFFTPRSLVAAMVAIV----------DP 150

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                + DP  G+GGFL      V                G + + +   +  A + +  
Sbjct: 151 QPGEKVVDPAAGSGGFL------VEAHAHAAGRGGAATVVGGDKDFDLFRLQTALLAM-- 202

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTG------KRFHYCLSNPPFGKKW---------EKD 308
                      +    ++L  D ++         +   L+NPPFG +            D
Sbjct: 203 -----VAGDDAHPHHQNSLDLDAWSHVAAGGLGTYDVVLANPPFGARIGVEDQALLGRYD 257

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              V          R    + +  D  +LFL      L      GGR  IVL       G
Sbjct: 258 LAHVWSRDPRTGGWRRTDTVDRSRDPQILFLELCVRLLRP----GGRMGIVLPEGVF--G 311

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420
            AGS       WL     IEA++  P   F   T+  T +        +    
Sbjct: 312 NAGSAYVW--EWLRTQGAIEALLDCPRTTFQPGTDTKTNVLFFRKDAPQGPTW 362


>gi|67922392|ref|ZP_00515903.1| similar to Type I restriction-modification system methyltransferase
           subunit [Crocosphaera watsonii WH 8501]
 gi|67855736|gb|EAM50984.1| similar to Type I restriction-modification system methyltransferase
           subunit [Crocosphaera watsonii WH 8501]
          Length = 349

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 136/390 (34%), Gaps = 76/390 (19%)

Query: 96  TRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKAGLLYKICKN---FSGIELHPD--- 148
              ++ES    F   A+ +F       S I  ++ +  L  + +     S I    D   
Sbjct: 6   ILKDIESAFRQFGYEAEDVFNAIAYIYSNIFSIKASEKLSGVLEKGKLISDIVFQDDCLK 65

Query: 149 ---------TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                          ++  Y++ +        + +  F TP  +      +L        
Sbjct: 66  KTINSYVKKDKDGENLTIFYQYFL---AKRFRDISGKFFTPHPIAMQMVKMLPV------ 116

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    + DPTCG G FL      V +   +          G +++     +C+  +
Sbjct: 117 ----KANAVIIDPTCGGGTFL----KTVREQWKNI----PCHLIGNDVDQ--MLICLTEL 162

Query: 260 LIRRLESDPRRDL--SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           +++  ++        + NI Q ++  +  F   +  Y L+NPPF         +  +  +
Sbjct: 163 VLKINKNHQENTSLLTSNIYQPNSQIQSFF--GQIDYILANPPFSLPV-DIFTSNSRLFE 219

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           +G          + SD   L +      L+     GGR   +L  S + N      E + 
Sbjct: 220 SGY---------RNSDA--LLIDLSFKLLKP----GGRLVCLLPHSIISN-----KEYQN 259

Query: 378 RRWLLENDL-IEAIVALPTDLFFRTNIATY---LWILSNRKTE--ERRGKVQLINATDLW 431
            R ++E D  + A++ LP  +F  T   T    + +L  +K E  +R  K    N + L 
Sbjct: 260 LREIVEKDWYLTAVIILPEGIFKSTASTTTRADIIVLDKKKNEQVDRNRKTIFANISSLD 319

Query: 432 TSIRNEGKK------RRIINDDQRRQILDI 455
             + +  K+        ++ + +  +IL I
Sbjct: 320 IPLNHRQKQVTTNDLENLLKNSKVSEILGI 349


>gi|237751945|ref|ZP_04582425.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430]
 gi|229376512|gb|EEO26603.1| type I restriction enzyme [Helicobacter winghamensis ATCC BAA-430]
          Length = 543

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 149/421 (35%), Gaps = 80/421 (19%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           +  +R           + +    V  + F+   +   S L     + + E  + +F  + 
Sbjct: 2   KELLRVFNYIQKYHEDNFDILYLVLEFLFFIKDKEQGSALL---MQKDKEKALENFKSHL 58

Query: 112 KAI-FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           + I  E F F S    L    +L  + + F           D     ++E +      + 
Sbjct: 59  QEIGLEYFGFHS---DLNYKKVLKSL-QGF-----------DIKAQTLWEFIQAITMQKT 103

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                ++ TP ++  L   +L                ++Y+P CG G +L     H  D 
Sbjct: 104 ILKLYEYATPAEINALVYGILDI----------KSGESVYNPCCGLGSWLLHLKLHTKD- 152

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                       +G ++ P++  +  A  L+  LE        K+I      S+   T  
Sbjct: 153 ---------CAFYGADINPKSIRIAKALALL--LEFKTCSLSIKDI-----FSEPFKTES 196

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F     +PP             +E K     +    +P        F+ +   +     
Sbjct: 197 KFDKVFCHPPL---LSHLSLKAPRESKLAPYNKTALEIP--------FIDYSLMRFSK-- 243

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWI 409
               +A  ++ +S L  G    GE    ++LL+N L+E+++ LP ++F ++T   + L I
Sbjct: 244 ----KAVFIVRTSLLSKGA---GERLC-KYLLKNGLLESVIELPDNIFPYKTESYSILVI 295

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
            +  K          INA D +       K           +ILD+Y S++N K+S  ++
Sbjct: 296 SNTNKRC------LFINARDFYIKEGKYHKLIN------LEEILDLYFSKQNTKYSNFVE 343

Query: 470 Y 470
           Y
Sbjct: 344 Y 344


>gi|170718764|ref|YP_001783948.1| N-6 DNA methylase [Haemophilus somnus 2336]
 gi|168826893|gb|ACA32264.1| N-6 DNA methylase [Haemophilus somnus 2336]
          Length = 1110

 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 105/343 (30%), Gaps = 44/343 (12%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDF---------DF---SSTIARL--EKAGLLYKICKN 139
                    +     +  K I + F         DF        +L  +   +L ++ + 
Sbjct: 332 EEIEAAFILFKNKKDETKKTILDKFTEIKYYTNNDFAFLDVHNKKLFFQNGAILKEVVQM 391

Query: 140 FSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
              I L  D    ++ + +++E  + +    V +    F TP  +V    + L   D   
Sbjct: 392 LQDIRLKTDNGGENQFLGDLFEGFLDQ---GVKQSEGQFFTPLPIVRFLVSSLPLADLIS 448

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAV 254
             ++P     + D  CG G FL +  + +       K       +    G E E     V
Sbjct: 449 GSDAPPK---MIDYACGAGHFLNEYASQIRPLVQAFKQADTAPYYQAIVGIEKEYRLSKV 505

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLS--KDLF--TGKRFHYCLSNPPFGKKWEKDKD 310
                 +   +          I  G  L+   D        F   ++NPP+    +   D
Sbjct: 506 AKVSAFMYGQDGI-------QIVYGDGLTAHNDKVKVENGAFSVLVANPPYSV--KGFLD 556

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            +  +                 +    F      +        G AAI+L SS L NG  
Sbjct: 557 TLSDDECKSFSLYKHVDKTDTFNSIETF---FIERTAQLLQQNGVAAIILPSSVLSNGNI 613

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                + R  LL++  I AI    +  F +T   T    L  +
Sbjct: 614 ---YIKAREILLQHFDIVAIAEFGSGTFGKTGTNTVTLFLRRK 653


>gi|72080953|ref|YP_288011.1| hypothetical protein MHP7448_0626 [Mycoplasma hyopneumoniae 7448]
 gi|71914077|gb|AAZ53988.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
          Length = 787

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 125/396 (31%), Gaps = 101/396 (25%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            NL++Y+ + +     IFE  +    I+ +            ++ I +         + N
Sbjct: 213 QNLQNYLYNSTFKTVDIFELNNIVELISNV------------YNLINISHKNYKGHDIMN 260

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +  + R++ S  ++   +  TP  +  L   L+                 + DPTCG+G
Sbjct: 261 AFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGSG 311

Query: 218 GFLTDA-------------------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            FLT+A                              K        G EL      +    
Sbjct: 312 TFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQACKDIKSNKLIGIELNEFNATLAGIN 371

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ML+         D S NI Q     +      ++   L NPPF +K              
Sbjct: 372 MLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES------------ 412

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                            + F+      L+      G+ A ++  S L      + E   +
Sbjct: 413 ----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLKK 452

Query: 379 RWLLENDLIEAIVALPTDLFF-RTNIATYLWIL----------------SNRKTEERRGK 421
            +++    +  I++LP D+F     + T + +L                  ++ EE    
Sbjct: 453 IFMMAK--VSHIISLPRDVFQPNAAVNTSIIVLEKYSQEKIKKIQKLASKKKEIEEHTQN 510

Query: 422 VQLINATD---LWTSIRNEGKKRRIINDDQRRQILD 454
           + LI+ +D   ++ + R     +  +   + ++IL 
Sbjct: 511 IFLIDFSDDGFVYANERRYKTDKFALKIKELQKILK 546


>gi|257785025|ref|YP_003180242.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
 gi|257473532|gb|ACV51651.1| N-6 DNA methylase [Atopobium parvulum DSM 20469]
          Length = 796

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 78/463 (16%), Positives = 134/463 (28%), Gaps = 130/463 (28%)

Query: 38  FTLLR-RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
              ++ R E     T+   R++Y A    N +      + G   Y  S+  +  L ST  
Sbjct: 201 LLFMKIRYERQQRGTKVFTRKQYEA-EEKNYEENIRPGLKGTVLY--SQSYMQRLFSTTK 257

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               + ++   SD  K    +  F   + +LE   L                   D V  
Sbjct: 258 EEFKDDHLFEDSDEIK--IRNNSFIQILGKLENFNL---------------SDTQDDVKG 300

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             +E  +    +        F TPR +V   T ++           P     + DPTCG+
Sbjct: 301 IAFEQFLG---TTFRGELGQFFTPRTIVDFMTEII----------DPQEGEIICDPTCGS 347

Query: 217 GGFLTDAMNHVADC---------------------------------------------- 230
           GGFL  A  +V +                                               
Sbjct: 348 GGFLIKAFEYVREKIEADIREQKEKLRSEFESDDFESKPEDEQIRVTVLIDKMQAVLNAE 407

Query: 231 ------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                  S  +       +G +  P         M++                    L+ 
Sbjct: 408 LDTSATNSRMQQLSRNCIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDG------LLNV 461

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKD------AVEKEHKNGELGRFGP------------ 326
           +    +RF   L+NPPFG+  ++ +         ++E K     ++G             
Sbjct: 462 NGIFEERFDVILTNPPFGQNVDRSQTITDADRFTDEEMKKKYRNKYGEAYDEALKQVDDH 521

Query: 327 -GLPKISDGSM---------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            G P +S   +         LF+      L+     GGR  +VL    L N       + 
Sbjct: 522 IGKPLLSLYDLGSTSTLTEVLFMERCLRLLKK----GGRMGMVLPEGVLNNKNL----AA 573

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEE 417
           +R +      +  I ++P D+F      +   L  +     EE
Sbjct: 574 VREYFEGKAKLILICSIPQDVFIAAGATVKPSLVFMRKFTAEE 616


>gi|303236690|ref|ZP_07323271.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
 gi|302483194|gb|EFL46208.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
          Length = 757

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 108/400 (27%), Gaps = 122/400 (30%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           F DNAK    +  F   +  LE   L                T  D V    +E  + + 
Sbjct: 260 FDDNAKIEIRENSFEQIVKELEIYNL---------------STTSDDVKGIAFEKFLGK- 303

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                     F TPR VV    ++L           P     + DP CG+GGFL     +
Sbjct: 304 --TFRGELGQFFTPRTVVDFMVSVL----------DPQEGELVCDPCCGSGGFLIKTFEY 351

Query: 227 VADCGSHHKIPPILV--------------------------------------------- 241
           V +                                                         
Sbjct: 352 VREKIEKEIEQQKETIKAKYYGDDYDKLPDKKKQKIEAEVAQTFSYLNEELNINNEKGRL 411

Query: 242 -------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                   +G +  P         M++                    L+ +     RF  
Sbjct: 412 RSLSFDCIYGTDANPRMARTAKMNMIMHGDGHGGVHHHDG------LLNVNGIFENRFDI 465

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGEL------GRFGPGLPK------------------ 330
            L+NPPFG + EKD    E +    +        R+G    K                  
Sbjct: 466 ILTNPPFGARVEKDLKISEADRFTDKAKISSYVERYGEAYNKALRQVNDNINKSLLSLYK 525

Query: 331 --ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S   +LF+    N L+     GGR  IVL    L N        + R ++     I 
Sbjct: 526 IDSSLTEVLFIERCLNLLKP----GGRMGIVLPEGVLNNPNLQ----KARDFVEGKAKIL 577

Query: 389 AIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQLIN 426
            IV++P D+F  +   +   L        EE     Q+ N
Sbjct: 578 LIVSIPQDVFIASGATVKPSLLFFKKFTEEEATTYSQIQN 617


>gi|313669543|ref|YP_004049968.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
 gi|313156740|gb|ADR35415.1| N-6 DNA methylase [Sulfuricurvum kujiense DSM 16994]
          Length = 597

 Score = 85.4 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 132/404 (32%), Gaps = 59/404 (14%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             +  L +  +      + P+      +                    +F  P ++V L 
Sbjct: 86  SDSKTLNEYIQFVLDNLVFPNVSEAFNV----------LSERQGSKFGEFAQPEELVDLL 135

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +    +            ++Y P   T G L   +                  + + +
Sbjct: 136 VKIADQDNPE----------SVYIPF--TSGTLLAGV---------LGKKANQKLYIENI 174

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG-KKW 305
              T  + ++    R L+         N     T    +  T  +F   ++ PPFG  K 
Sbjct: 175 YLNTVVLELS----RYLDHVSMDYAINNPIYEPTFVDLETRTLNQFDVSVAIPPFGGIKA 230

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           EK+   +  +         G       +G +  + H  ++        GRA  V+S   L
Sbjct: 231 EKEIANIRWDRYRVADTLNG----SSRNGEIALIEHTLSQ------TTGRAIFVISHGLL 280

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
           F   A      IR  LL N  IEA++ LP +LF  + I T + IL+N+ + +    V  I
Sbjct: 281 FRSAADW---MIREQLLANKQIEAVITLPGNLFIHSVIPTAILILNNQCSYQ---DVLFI 334

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLR 485
           +A+ +   ++  GKK  ++ D     IL +   RE+ +    L            L P R
Sbjct: 335 DASKM---VKRVGKK-NVLTD--LETILQLLEKRESVEEVSALVSYKELNANQNSLNPSR 388

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
               +D   +  +       KLS L       ++K         
Sbjct: 389 YIVSVDDQNIQNILEAHDTEKLSNLTVLQRSQLIKDEEADDGTE 432


>gi|322510790|gb|ADX06104.1| putative type I restriction modification N-6 adenine specific
           methyltransferase domain protein [Organic Lake
           phycodnavirus 1]
          Length = 184

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 23/196 (11%)

Query: 227 VADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           +     H K+    +     +G+ELEP+T+ + V+ MLI       + D   +I+   T 
Sbjct: 2   IQAKNKHIKLDWDFIMNEGLYGKELEPDTYQLAVSNMLISTGHMFEKLDRGDSIRVPIT- 60

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  ++F   L+NPPFG    K  +      +            K  +   LF+  +
Sbjct: 61  -------RKFDNILANPPFGINGLKYDEFESPLKRE-------YVPIKTDNAVSLFIQAI 106

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+      G+ A+VL        ++ +    IR +LL+   ++ I+ LP+ +F  T+
Sbjct: 107 IYMLK----INGKCAVVLPDGQDLFSKSNNRLVAIREYLLKTCDLKEIIYLPSGIFTYTS 162

Query: 403 IATYLWILSNRKTEER 418
           I T ++    ++  +R
Sbjct: 163 IKTCVFYFVKKERRKR 178


>gi|291515458|emb|CBK64668.1| Type I restriction-modification system methyltransferase subunit
           [Alistipes shahii WAL 8301]
          Length = 837

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 98/371 (26%), Gaps = 107/371 (28%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           FD    I    ++ LL  I +  S +EL+     D +    +E  + +           F
Sbjct: 232 FDSEDKIRIRRESFLL--ILEELSSVELY--DTSDDIKGIAFELFLGK---TFRGELGQF 284

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TPR +V+    +L   +             + DP CG+GGFL  A  HV +        
Sbjct: 285 FTPRTIVNYMVEVLNVKEGD----------KVCDPCCGSGGFLIKAFEHVQNQIDQDIHK 334

Query: 238 P---------------------------------------ILVPHGQELEPETHAVCVAG 258
                                                        G +            
Sbjct: 335 QITLLMDNLNLSDTEKQYKINTLLSECDKTKEGSRYHKLCHDYFFGVDANVRMARTSKMN 394

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-----DAVE 313
           M++              I  G            F   L NPPFG   EKD      D   
Sbjct: 395 MIMHGDGHVGVYLHDGLINVG------GVYDNNFDVILINPPFGAHVEKDMRITSSDIPT 448

Query: 314 KEHKNGELGRFG------PGLPKISDGS------------------------MLFLMHLA 343
              +      FG         P                              +LF+    
Sbjct: 449 DRERALYEELFGSEYISKVYTPIKEYAQEIGKDKKIGKRILELYQINNNSTEILFIERCI 508

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN- 402
           N L+     G RA +VL    L N         +R+++     I  I ++P D+F  +  
Sbjct: 509 NLLKP----GKRAGVVLPEGVLDNPALD----RVRKFIESRVKILNITSIPADVFLSSGA 560

Query: 403 -IATYLWILSN 412
            I   L  +  
Sbjct: 561 NIKPSLVFIEK 571


>gi|317473783|ref|ZP_07933064.1| type I restriction modification DNA specificity domain-containing
           protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316910040|gb|EFV31713.1| type I restriction modification DNA specificity domain-containing
           protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1249

 Score = 85.0 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 89/577 (15%), Positives = 177/577 (30%), Gaps = 90/577 (15%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES------ 102
           E  +    E         + L          F + +    +         NL        
Sbjct: 267 EELKFQWLEGRDNHVDFQLRLTDLYSKGMKKFLDRTVSDFNNEDFDKRCANLNEDTKQYL 326

Query: 103 -------YIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                   +   ++   K ++++  F       E A ++ ++ +   G  +  +      
Sbjct: 327 LREVNKLRLEKNNEFAIKEVYDNASFE------ENAKVVKEVVELIQGYRIRYNKRQQY- 379

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMI-RTLYD 211
           +S+ +E L+    + + + A  + TP  +       L              G I   + D
Sbjct: 380 LSDFFELLL---TTGLKQEAGQYFTPVPIAQFIIKSLPLDSIMAEKLSRKDGEILPYMID 436

Query: 212 PTCGTGGFLTDAM-------------NHVADCGSHHKIPPILVP-------HGQELEPET 251
              G+G F+T+ M              ++ +   H                +G E +   
Sbjct: 437 YAAGSGHFITEFMHEIQDIINACDTSKYIEETRKHLINWQNCHFDWATNYVYGIEKDYRL 496

Query: 252 HAVCVAGMLIRR------LESDPRRDLSKNIQQGSTLS---KDLFTG-KRFHYCLSNPPF 301
             V   G  +        + SD   +   N +    L     D     ++F   LSNPP+
Sbjct: 497 VKVGKVGCYLHGDGLANVILSDGLANFCNNKEYKGKLRKQVNDGQKDNQQFDIVLSNPPY 556

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
                  +      +   +   +       S+   LF+      L+     GG A ++L 
Sbjct: 557 SVS--SFRQTTRDYYTEQDFELYNSLTDNSSEIECLFIERTKQLLKD----GGIAGVILP 610

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           SS L N       ++ R  +L+   I +I  L ++ F  TN  T +  L  R        
Sbjct: 611 SSILSNSGI---YTKAREIILQYFDIVSIAELGSNTFMATNTNTVVLFLRRR-------- 659

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG---YRRI 478
                  + + +            D   R + D+ ++      S+ + +   G      I
Sbjct: 660 ------DNYFAANTKSA------VDTYFRTLNDVTINGIETPASKYVAHVWEGLDYTDYI 707

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            +L+ L    +      A  +  I+ +  + L+++      + ++  I  Y      VK 
Sbjct: 708 TLLQKLPNDKVKAHEIYAEYKKKISAKNDAKLYEAILNIEAEKLLYFILAYSQKVVIVKS 767

Query: 539 SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
             K  E + L  + S       I+A  +K    D  T
Sbjct: 768 GEKDVEKRFLGYEFSNRRGNEGIHAI-QKGKNIDECT 803


>gi|309808437|ref|ZP_07702336.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168265|gb|EFO70384.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
          Length = 329

 Score = 84.6 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 92/301 (30%), Gaps = 44/301 (14%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG---S 232
              TP  +       +    ++             DP  G+G FL  AM    D      
Sbjct: 8   QAFTPDHICDFMCKAVGVNKNSRI----------LDPCSGSGAFLVRAMTDAMDDCDTEE 57

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKR 291
             +        G E E     +    MLI         D + N+ Q S   + +    K 
Sbjct: 58  EREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWIKDKN 110

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            +  L NPP+    +       K  K+              D S  F  H    +     
Sbjct: 111 INIVLMNPPYNATRKFCDPEYVKSWKSS----------NKEDPSKGF--HFVEYVARHIP 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWIL 410
              + A++L           S   + ++ +L+N  +EA+ +LP ++F+   +      I 
Sbjct: 159 ANSKIAVLLPMQAAI--GTSSEVKKYKKKMLDNYTLEAVFSLPNEIFYPGASAIACCMIF 216

Query: 411 S-NRKTEERRGKVQL-INATDLWTSIRNEG------KKRRIINDDQRRQILDIYVSRENG 462
             ++K      +        D +   +  G           +    + + LD+Y +++  
Sbjct: 217 DLSQKHARSNTETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWASTKDEWLDLYKNKKEV 276

Query: 463 K 463
            
Sbjct: 277 P 277


>gi|220918152|ref|YP_002493456.1| protein of unknown function DUF450 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956006|gb|ACL66390.1| protein of unknown function DUF450 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 950

 Score = 84.6 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 101/344 (29%), Gaps = 100/344 (29%)

Query: 153 RVMSNIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            V+ + YE  + +                 V +    F TP  VV     ++        
Sbjct: 319 DVLGHAYEQFLGKHLRLTPTRRVRIEEKPLVRKAGGVFYTPDVVVAFIIRVVFAGALDGR 378

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------------------------SHHK 235
             S  +   + DP CG+G FLT A + +                            S  K
Sbjct: 379 TTSRPL--RILDPACGSGSFLTSAFDALLRNRSGAPGAAPSRTAGIEDTSSSPLGVSEKK 436

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGS 280
                  +G +++P    V    +L+R ++ +                  DLS NI+ G+
Sbjct: 437 RLLTTHLYGVDIDPHAVEVAKLSLLLRVVDGESGASLKAAYDSSNEKALPDLSPNIKCGN 496

Query: 281 TL-SKDLF-----------------------------TGKRFHYCLSNPPFGKKWEKDKD 310
           +L + D F                                 F   ++NPP+         
Sbjct: 497 SLVASDYFGLRLTASAEETCSVNAFDWQTAFPDVFQGEDPGFDVIVANPPYVSLQSGFLA 556

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
               E+       F  G+       +  +F+      L       G   +++ ++ L N 
Sbjct: 557 PALLEYLQSHYESFD-GI-----ADLFAMFVERALGLLSEH----GVCGMIVPTTLLMN- 605

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
                   +R+ LL+   +  ++ L   +F    + T + +   
Sbjct: 606 ---RSFQRLRKLLLKKATLTHVIDLGDGVFRDAVVPTCIIVFRK 646


>gi|108563890|ref|YP_628206.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
 gi|107837663|gb|ABF85532.1| type I restriction enzyme M protein [Helicobacter pylori HPAG1]
          Length = 136

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 23/146 (15%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W  A+ L G    +++   +L    L+ +                A  
Sbjct: 1   MAIKKSELYSSLWAGADSLRGGMDASEYKNYVLNLLFLKYISD-------------KARN 47

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD--NAKAIFEDFDFS 121
            +  + +S ++V    FY   E  L+  G     + L   IA  +D    + + +  DF+
Sbjct: 48  DAKNNTDSAIEVPQGCFY---EDILALEGDKEIGDKLNKIIAKIADRNELEGVIDSVDFN 104

Query: 122 STIARLEKA----GLLYKICKNFSGI 143
               +L +       L  + K F+ +
Sbjct: 105 DN-TKLGEGKAMIDTLSNLVKIFADL 129


>gi|157737950|ref|YP_001490634.1| Type I restriction-modification system, M subunit, putative
           [Arcobacter butzleri RM4018]
 gi|157699804|gb|ABV67964.1| Type I restriction-modification system, M subunit, putative
           [Arcobacter butzleri RM4018]
          Length = 771

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 131/501 (26%), Gaps = 162/501 (32%)

Query: 44  LECALEPTRSAVREKYLAF----------GGSNIDLESFVKVAGYSF----YNTSEYSLS 89
           LE  L  T+    +++                     SF +++   F    Y  S    +
Sbjct: 181 LEDILSKTKEFTGDEFAKLLHKCHNIIRNNDKLSPEASFDEISKILFLKIMYEKSPDDDT 240

Query: 90  TLGSTNT--------------RNNLESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLY 134
            + S                 +   ++Y+    D  K  F+D        +++ K     
Sbjct: 241 LIFSKQKVKKEMEVHEKRVQRKETSKTYLEEKFDGVKNAFKDDGIFEENEKIKIKENSFL 300

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +I +       +     + V    +E  + R           F TPR +V+    LL   
Sbjct: 301 EIVQELE--IYNLTATSEDVKGIAFETFLGR---TFRGELGQFFTPRVIVNFMVDLL--- 352

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD------------------------- 229
                  +P     + DP  G+GGFL  A   V +                         
Sbjct: 353 -------NPQANELICDPCAGSGGFLIKAFESVKETIDNKYIEIKKKKYNELFPKDIELT 405

Query: 230 ---------------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
                                     +        G +  P    V    M++       
Sbjct: 406 EKEQDKKTKLYDSYLAEINKEQEKEIEQLSKRAIFGTDANPRMARVSKMNMIMHG----- 460

Query: 269 RRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE------------ 315
             D    I     L   +     RF   L+NPPFG    ++   VE++            
Sbjct: 461 --DGHNGIHHNDGLLNVNGIFHNRFDVILTNPPFGTTLSQNSPIVEEDSKYRNDQLIETY 518

Query: 316 ---------HKNGELGRFGP------------------------GLP-------KISDGS 335
                    +K G    F                          G P         S G 
Sbjct: 519 IKKYGEELYYKAGFTETFNYANIEHRLKAKELYLEKMNQVTHNFGKPIRGLFEVGKSAGQ 578

Query: 336 --MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+    + L      GGR  IVL    L +          R +      I  IV+L
Sbjct: 579 TEVLFIERCLDLLRD----GGRMGIVLPEGVLNSSNLQ----NAREYFESRAKILLIVSL 630

Query: 394 PTDLFFRTN--IATYLWILSN 412
           P ++F  +   + T L  L  
Sbjct: 631 PQEIFISSGATVKTSLVFLKK 651


>gi|332358995|gb|EGJ36816.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus sanguinis SK49]
          Length = 693

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 100/308 (32%), Gaps = 54/308 (17%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + +         +     S ++E  ++   S+       F TP  +V    +++      
Sbjct: 290 EKYDKKYGKFLNISKDFKSKLFETFMK--NSDDKSDMGQFFTPLKIVDEMVSMVDI---- 343

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDA-MNHVADCGSHHKIPP--ILVPHGQEL-----EP 249
                     T+ DP CG G FL +A    + D  S+ K      +   G +      + 
Sbjct: 344 ------SEGMTICDPACGVGKFLLEAVEKRIEDSYSYSKGKLTSKIRFFGYDKMMSEKDD 397

Query: 250 ETHAVCVAGMLIRRLESDPRRDL------SKNIQQGSTLSKDL--------FTGKRFHYC 295
            T  +  A  LI   E   + +          I    +                 R+   
Sbjct: 398 ITIILAKANTLIYFSELFQQNNSFKDVQTIAKILLNDSFYLHKSMLGTLENLEENRYDLI 457

Query: 296 LSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           L+NPP+ +  E  D       +K G  G              LFL  +   ++     GG
Sbjct: 458 LANPPYYQSKEMSDLAKATDIYKYGGSGVEA-----------LFLEWIMRSVKH----GG 502

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
            A IVL      N      + +++        I+A+++LP + FF T   TY+  +  + 
Sbjct: 503 VANIVLPDGIFSNHANKKLKEKLKELF----FIDALISLPVNAFFNTPKKTYILTIRKKT 558

Query: 415 TEERRGKV 422
             E    +
Sbjct: 559 ENEIENNI 566


>gi|91205673|ref|YP_538028.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|91069217|gb|ABE04939.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
          Length = 540

 Score = 84.3 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 123/406 (30%), Gaps = 52/406 (12%)

Query: 209 LYDPTCGTGGFLTD-----AMNHVADCGSHHKIPPILVPHGQEL---EPETHAVCVAGML 260
           + DP CG G FL +                      +    +     E +T  +  A ML
Sbjct: 21  ICDPACGVGKFLLEPIKSKIDRFYKIKDGKIIPKITIRGFDKGFGNNEQKTIILAKANML 80

Query: 261 I-----------RRLESDPRRDLSKNIQQGS---TLSKDLFTGKRFHYCLSNPPFGKKWE 306
           I              E     + +  ++  S   TL         +   L+NPP+     
Sbjct: 81  IYFSEVIKNYPNHTKEFADLFNSTFTLKTDSILGTLKDP--VENTYDLILTNPPYVTDGS 138

Query: 307 KDKDA--VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
            +      +             G+        LF+  +   L+      G+A I++    
Sbjct: 139 SNFKEEIQKNNDLKKYYKINAMGV------EGLFMEWIIRALKP----NGKAFIIVPDGI 188

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN--RKTEERRGKV 422
                    +  +R +L +   I+ I++LP + FF T   TY+  ++    KT+ +   V
Sbjct: 189 FNRQN----DRNLRAFLCQECFIDGIISLPENTFFTTKQKTYILCITKKNNKTDIQSDPV 244

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
                +++  S       R  I  +   + + +Y   +  K +          + + + +
Sbjct: 245 FTYLVSEIGESRDVY---RFDIEQNDLIEAITLYNFFKGNKKAFENINTDPRCKIVPIEK 301

Query: 483 -PLRMSFILDK----TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
               + + +D+         L  +   + LS L  S +L  +   ++           V 
Sbjct: 302 FESEIYWSIDRWWSKEEKITLGIEKENKTLSVLEFSSYLSCMADTLENFSLGLKKIKIVN 361

Query: 538 ESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIP 583
            +        +        I     +F   +    PV     E  P
Sbjct: 362 NNQTKKV--KIGNIFDFPAIKGITKSFIESNKGNIPVYGGKKEQEP 405


>gi|255525761|ref|ZP_05392692.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
 gi|255510584|gb|EET86893.1| type I restriction-modification system, M subunit [Clostridium
           carboxidivorans P7]
          Length = 128

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 46/134 (34%), Gaps = 18/134 (13%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----------PTR 52
            + +  ++ + +W  A +L G    +++   IL F   R L    E              
Sbjct: 1   MSNNLQTITSKLWAMANELRGTMDASEYKNYILAFMFYRYLSEHQEKYLVGNNVIDVEKG 60

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111
            ++ + YL         +    ++    Y  +   +  +L +      +         + 
Sbjct: 61  ESINDAYLKQAVGADLDDYLQDISLSLGYAIAPNDTWESLINKINDAQVIP------SDY 114

Query: 112 KAIFEDFDFSSTIA 125
           + IF++F+ +S I 
Sbjct: 115 QTIFDNFNKNSGIK 128


>gi|224437223|ref|ZP_03658200.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313143683|ref|ZP_07805876.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128714|gb|EFR46331.1| type I restriction enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 561

 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 145/457 (31%), Gaps = 77/457 (16%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            SFS   +  F           L     L KI K      +    + +      + H+I 
Sbjct: 60  ESFSQALQEAFGA----ELYTPLNPNANLLKILKVVHTQTITNSVIEE------FLHIIT 109

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +   + +     + TP ++  L   +L                ++Y+P  G G       
Sbjct: 110 Q--KKTTHKLFSYSTPLEINELLVGILDI----------KETESVYNPCYGMGSLFFAIC 157

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           NH             +  +G+ELE     +         +        S+++   + L+ 
Sbjct: 158 NHAK----------NVELYGEELESTLAKIAK-------ITCKILNLSSQHLVLNNILTN 200

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLA 343
             F   +F   + NPP                   E  RF        +   +LFL+H  
Sbjct: 201 AQFKHHKFDKIICNPPLDSHIGTQF--------LKEDERFSSYETLIKTYPELLFLIHSL 252

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+           +L +  L      S E  +R  L E+ LIEAI+ LP ++F     
Sbjct: 253 SHLKDKG------VFILRTQTLLKS---SLEGRLREKLCEDRLIEAIIELPKNIFPHQAH 303

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + +LS          +  INA       R +GK  R+IN      +L +Y  +   +
Sbjct: 304 DFSIIVLSQN-----NDSILHINANTP-HFYRKDGKYNRLIN---LSSLLALYKHKATSE 354

Query: 464 FSRMLDYRT-------FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
            S +   +         GY   K  + +  S  L    ++       +        +F+ 
Sbjct: 355 HSTLTPLKQINPHDLSVGYYLHKPKQEVADSLYLKDLQVSIFRGQRVYGSPKDEKITFF- 413

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
                 +     +G+ + F  +  K ++ K  K    
Sbjct: 414 ---DLGVADFAEFGFCDEFSTQRFKGDKTKIKKYALK 447


>gi|145642017|ref|ZP_01797589.1| putative type I restriction-modification system,
          methyltransferase subunit [Haemophilus influenzae
          R3021]
 gi|145273288|gb|EDK13162.1| putative type I restriction-modification system,
          methyltransferase subunit [Haemophilus influenzae
          22.4-21]
          Length = 90

 Score = 83.9 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 8  AASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK----YLAF 62
             L +FIW  A+D L   +    +  VILP  +LRRL+  LEP++ AV E+        
Sbjct: 6  HNKLVSFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDTLLEPSKEAVLEEMRFQKEEL 65

Query: 63 GGSNIDLESFVKVAGYSFYNTSE 85
            + +D     K+    F+ T  
Sbjct: 66 AFTELDDLPLKKLP-AMFFITPR 87


>gi|313896499|ref|ZP_07830050.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974923|gb|EFR40387.1| N-6 DNA Methylase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 798

 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 74/561 (13%), Positives = 150/561 (26%), Gaps = 125/561 (22%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L +             F        ED  F        +     +I +       +    
Sbjct: 238 LKARGIDQAYMQ--NLFDTTKIEFKEDHLFEDNDEIKIRENSFVQILEKLEN--YNLSDT 293

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            D V    +E  +    +        F TPR +V   T +L           P     + 
Sbjct: 294 QDDVKGIAFEQFLG---TTFRGELGQFFTPRTIVDFMTEIL----------DPQEGEVIC 340

Query: 211 DPTCGTGGFLTDAMNHVA------------------------------------------ 228
           DPTCG+GGFL  A  +V                                           
Sbjct: 341 DPTCGSGGFLIKAFEYVREKIEADVRLQKEKLRASLEGNDFDSKLEEEQIEISDKIDAMQ 400

Query: 229 -----DCGSHHKIPPILVP-----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                +  +  K   +        +G +  P         M++                 
Sbjct: 401 TALNTELDTSIKESRMYQLSRNCIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDG---- 456

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK----------DAVEKEHKNGELGRFGPGL 328
              L+ +    +RF   L+NPPFG+  ++++          + +++++K      +   L
Sbjct: 457 --LLNVNGIFEERFDVILTNPPFGQNVDRNQLISEADRFTDEEMKRKYKQKYGKSYDEAL 514

Query: 329 PKISD------------------GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            ++ D                    +LF+      L+     GGR  +VL    L N   
Sbjct: 515 KQVDDHIGASLLSLYDLGNTSTLTEVLFMERCLRLLKK----GGRMGMVLPEGVLNNKNL 570

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
               + +R +      +  I ++P D+F          ++  RK           +  + 
Sbjct: 571 ----ATVREYFEGRAKLILICSIPQDVFIAAGATVKPSLVFMRK---------FTD-EEE 616

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS--- 487
               R +      +    + +I D+  +      +  +  +     RI++ +  +     
Sbjct: 617 QEYARCKKTALDEVTALHQPEIDDLNTTIAECSSNTDILKKDLKDARIRMKQAKKAKDAD 676

Query: 488 -FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
              ++K   A        R      +    D+ K +  +  P    +      I   +  
Sbjct: 677 FSAIEKEVEAIQLEQKENRDSKKSAEKALKDLQKQIADETKPVVKKKFDYDVPIAKIDDA 736

Query: 547 TLKVKASKSFIVAFINAFGRK 567
            +    + S            
Sbjct: 737 GITTTGAASEGNQLPALVNEY 757


>gi|170079642|ref|YP_001736275.1| Type I restriction modification system, N-6 DNA methylase
           [Synechococcus sp. PCC 7002]
 gi|169887311|gb|ACB01020.1| Type I restriction modification system, N-6 DNA Methylase
           [Synechococcus sp. PCC 7002]
          Length = 1179

 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 138/443 (31%), Gaps = 80/443 (18%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           +  L      V E+      + +  E              E+  +    T  +N ++   
Sbjct: 203 DEVLANAGVDVFEEVFKLIFTKLYDEWLSGQGSNRNKRILEFRNTGQTETALKNKIQDLF 262

Query: 105 ASFSDNAKAIF-EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
               +  + +F ED   + T + L       +  K F+            V+   +E+L+
Sbjct: 263 DRAKEKWEGVFSEDSKITLTPSHLSVCVRSLENVKLFNSN--------LDVIDEAFEYLV 314

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
                        + TPR V+ +   +L          +P     + D   G+ GF    
Sbjct: 315 ---NQSSKGEKGQYFTPRYVIDMCVKML----------NPQEDEYMIDTAAGSSGFPVHT 361

Query: 224 MNHVADCGSHHKIPPILVP------------------HGQELEPETHAVCVA-------- 257
           + HV       +                            + + ++  V           
Sbjct: 362 IFHVWKQILEDEGIEASHLFTIEEKPHRCTEYVEKRVFAIDFDEKSVRVARTLNLIAGDG 421

Query: 258 ---GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------------FHYCLSNPPF 301
               M +  L+ D   +++K      T   D F   +             F   ++NPPF
Sbjct: 422 QTNVMRLNTLDYDGWDEITKEESWNDTY-NDGFKRLKKLRKNSNSYKEFEFDVLMANPPF 480

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
               ++ +   +        G++   + +     +LF+    + L+     GGR AIVL 
Sbjct: 481 AGDIKEGRIIHKYALSKKPNGKWQTKVGR----DILFIERNLDFLKP----GGRMAIVLP 532

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420
                N    S + +IR ++ E   I A+V L  + F   T   T + ++     + R G
Sbjct: 533 QGRFNN----SSDKQIREFIAERCRILAVVGLHGNTFKPHTGTKTSVLLVQKWNDDPRAG 588

Query: 421 KVQ--LINATDLWTSIRNEGKKR 441
            +     +    + +++  GK  
Sbjct: 589 ALCPRQDDYNIFFATMQKSGKDN 611


>gi|238854548|ref|ZP_04644885.1| putative N-6 DNA methylase [Lactobacillus jensenii 269-3]
 gi|282932366|ref|ZP_06337799.1| putative N-6 DNA methylase [Lactobacillus jensenii 208-1]
 gi|238832841|gb|EEQ25141.1| putative N-6 DNA methylase [Lactobacillus jensenii 269-3]
 gi|281303523|gb|EFA95692.1| putative N-6 DNA methylase [Lactobacillus jensenii 208-1]
          Length = 569

 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 112/349 (32%), Gaps = 70/349 (20%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           ++ +       T   ++       +    +F        I  L+   +L K+        
Sbjct: 213 KFRVVEDNPKKTAETIKQLYNEAKNRWNDVFTK---DDEI-TLDD-DVLIKVVAQLQHYS 267

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L        V+S  +E +I             F TP +V  L   +           +P 
Sbjct: 268 LMNSNRN--VISEAFESIISY---ATKGSQGQFFTPENVARLMVEI----------ANPT 312

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETHA 253
              T++DP  GT GFLT +M HV +     K+                  G E +     
Sbjct: 313 ESTTVFDPASGTAGFLTTSMFHVWNQIQQTKMRDDAKKDKEQQYATNNLFGIEKDSFLAK 372

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF--------TGKRFHYCLSNPPFGKKW 305
           +  A M +         D    I    +L +  +          K+F+  L+NPPFGK  
Sbjct: 373 ISKAFMAVLG-------DGRAGIFVEDSLKEKNWKIATQAKIKDKKFNIILTNPPFGKDI 425

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +   +  E          F  G    +   + F+      LE     GG   ++L  +  
Sbjct: 426 KLSTETKEN---------FEFG----NKIELAFIEMSLRYLEK----GGILGVILPETVF 468

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILSN 412
              +A     ++R  L   + I  I+ LP D F  +  N  T +  L  
Sbjct: 469 HAPKAR----QVREKLFYKNNITHIIDLPHDTFRPYN-NAKTDIIFLRK 512


>gi|310287718|ref|YP_003938976.1| N-6 DNA methylase [Bifidobacterium bifidum S17]
 gi|309251654|gb|ADO53402.1| putative N-6 DNA methylase [Bifidobacterium bifidum S17]
          Length = 843

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 99/274 (36%), Gaps = 57/274 (20%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            + V +G   + TP+ ++  A  L+                 + DP CGTGGFL +  + 
Sbjct: 299 SANVKQGEGQYFTPQRIIESAVKLMEIDYHD----------KVIDPACGTGGFLFETYST 348

Query: 227 VA-----DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +      +     +       +G +L+     +  A M+         RD S NI  G +
Sbjct: 349 LLKRASGEQRDEIRTWAHRNLYGVDLDSINVKLARALMI-------GARDGSTNIVLGDS 401

Query: 282 LSKDLFTGK-------------RFHYCLSNPPFGKKWE------KDKDAVEKEHKNGELG 322
           L +  +                 +   L+NPPFG++ +      K       +H +G   
Sbjct: 402 LREQKWQDFPMLTPVLGRETDGSYDVVLTNPPFGERLKIRATDAKQAKYSICQHTSGGYP 461

Query: 323 RFGPGLPKISDGS--MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                    SD    ++F+      L     GGGR  IVL  +  F+    S     R+W
Sbjct: 462 SDKY-----SDTELGLVFMERAYRLL----AGGGRLGIVLPETYFFS----SSYQWFRKW 508

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
           +  +  + A++ +P + F       T  +++  +
Sbjct: 509 VSRHFDVLAVMNIPMEAFQGFCRAKTNFYVMRKK 542


>gi|48243647|gb|AAT40788.1| putative type I restriction/modification methyltransferase
           [Haemophilus influenzae]
          Length = 167

 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 9/169 (5%)

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
              + E EIR+ ++  DL+E +VALP  LF  T I   +W L+  K  +R+G+V  I+A 
Sbjct: 1   SQTNNEGEIRKAIINADLVECMVALPGQLFTNTQIPACIWFLNRNK--KRKGEVLFIDAR 58

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
            +           R    D   +I D   + +    S   + +    +   +       F
Sbjct: 59  QIGYMKDRV---LRDFTADDIAKIADTLHAWQT---SDGYEDQAAFCKSTTLEEIAGNDF 112

Query: 489 ILDKTGLA-RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
           +L         E +      +   Q+    + +   +        +  +
Sbjct: 113 VLTPGRYVGTAEQEDDGVPFAEKMQNLTALLKEQFAKSTELEAEIKKNL 161


>gi|34557965|ref|NP_907780.1| DNA methylase-type I restriction-modification system [Wolinella
           succinogenes DSM 1740]
 gi|34483683|emb|CAE10680.1| DNA METHYLASE-TYPE I RESTRICTION-MODIFICATION SYSTEM [Wolinella
           succinogenes]
          Length = 1073

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/408 (15%), Positives = 129/408 (31%), Gaps = 85/408 (20%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           S  ++        V+ + +E+L+ +           + TPR V+ +   +L         
Sbjct: 231 SLQDVKLFNSNLDVIDDAFEYLVNK---TSKGEKGQYFTPRYVIDMCVKML--------- 278

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVP 242
            +P    T+ D   G+ GF    +  V                                 
Sbjct: 279 -NPQEEETMIDTASGSCGFPIHTVFEVWRKIYKDLGIEESHLFTAEKKHERALEYVREKV 337

Query: 243 HGQELEPETHAVCVA-----------GMLIRRLESDPRRDLSKNIQQGS----------T 281
            G + + ++  V               + +  L+     + +K+                
Sbjct: 338 FGIDFDDKSVRVSRMLNIIAGDGHTNVLNLNSLDFSRWEETTKDESWQDIYFDGWRRLKK 397

Query: 282 LSKDLFTGKRFHY--CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           L  D  + K + +   ++NPPF    ++ +   + E      G+F   + +     +LF+
Sbjct: 398 LRSDKNSDKAYEFDIVMANPPFAGDIKESRILHQYELGKNASGKFQTKVGR----DILFI 453

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 L+     GGR A+VL      N    S +  IR ++     I A+V L  ++F 
Sbjct: 454 ERNLEMLKS----GGRMAVVLPQGRFNN----SSDKYIRDFIASKCRILAVVGLHGNVFK 505

Query: 400 -RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T   T +  +          K    +    + +++   K      D+   +I   YV 
Sbjct: 506 PHTGTKTSVLFVQKWDAILCPKK---EDYPIFFATMQKSSK------DNSGDKI---YVK 553

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
             +G  S  LD        + V   L     + + G+A    +   ++
Sbjct: 554 NSDG--SNRLDSHD----HLIVEHDLYNHDGITQDGIAEAFLEFAKKE 595


>gi|315634181|ref|ZP_07889470.1| type I site-specific deoxyribonuclease [Aggregatibacter segnis ATCC
           33393]
 gi|315477431|gb|EFU68174.1| type I site-specific deoxyribonuclease [Aggregatibacter segnis ATCC
           33393]
          Length = 673

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/447 (14%), Positives = 130/447 (29%), Gaps = 107/447 (23%)

Query: 44  LECALEPT--------RSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           L   L              +  +  +       ++ E         F    +   + L  
Sbjct: 172 LSDILNEKYTIHDLIKHDKLVNERKSLKDLILEMEDEVLANAGIDVFEEVFKLIFTKLYD 231

Query: 94  T-NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTV 150
              +  N + Y+   ++    I    +  + I  L K        +    + I+L P  +
Sbjct: 232 EMQSGRNEKRYLEFRNNGNTEI----ELKNKIQSLFKKANEKWEGVFSKDAKIQLTPSHL 287

Query: 151 P---------------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
                             V+   +E+LI +           + TPR ++ +   +L    
Sbjct: 288 SVCVSSLQDVKLFNSNLDVVDEAFEYLISK---SSKGEKGQYFTPRYIIDMCVKML---- 340

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ---------- 245
                 +P    ++ D   G+ GF    + HV +     +                    
Sbjct: 341 ------NPTKDESIIDTASGSCGFPVHTIFHVWEQILKEEGLHKSHLFTSKEKPIECTDY 394

Query: 246 --------ELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGST---------- 281
                   + + +   V     LI        L  +       + + G+T          
Sbjct: 395 VTTKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDWERWDEKTGNTKKEIVGDTEW 454

Query: 282 ---------------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                          +S +     +F   ++NPPF    ++ +   + E      G+   
Sbjct: 455 LDTYGEGWKKIRQLRVSNESNRDFKFDILMANPPFAGDIKESRILAKYELGKKPNGKTQT 514

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            + +     +LF+    + L+     GGR AIVL      N    S +  IR ++ E   
Sbjct: 515 KVGR----DILFIERNLDFLKD----GGRMAIVLPQGRFNN----SSDKAIREFIAERCR 562

Query: 387 IEAIVALPTDLFF-RTNIATYLWILSN 412
           I A+V L  ++F   T   T +  +  
Sbjct: 563 ILAVVGLHGNVFKPHTGTKTSVLFVQK 589


>gi|320536548|ref|ZP_08036573.1| N-6 DNA Methylase [Treponema phagedenis F0421]
 gi|320146603|gb|EFW38194.1| N-6 DNA Methylase [Treponema phagedenis F0421]
          Length = 757

 Score = 83.1 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 76/449 (16%), Positives = 133/449 (29%), Gaps = 115/449 (25%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKN-FSGIE-----LHPDTVPDRVMSNIYEHLIRR 165
           + +FE         +L       +I +N F  I       +  T  D V    +E  + +
Sbjct: 244 QNLFEKTKQEFANDKLFDDNAKIEIRENSFEQIVKELQIYNLSTTSDDVKGIAFEQFLGK 303

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                      F TPR +V+   ++L           P     + DP CG+GGFL  A  
Sbjct: 304 ---TFRGELGQFFTPRTIVNFMVSVL----------DPQEGEYICDPCCGSGGFLIKAFE 350

Query: 226 HVA-----------------------DCGSHHKIPPILV--------------------- 241
           +V                        +  S  +   I                       
Sbjct: 351 YVREKIEKDIVAQKEKIKADLYDEKYEKMSDDEKKQIDHKMSEVANKLNEELNILNDNGR 410

Query: 242 --------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                    +G +  P         M++                    L+ +     RF 
Sbjct: 411 LRSLSYDCIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDG------LLNVNGIFENRFD 464

Query: 294 YCLSNPPFGKKWEKDKD------AVEKEHKNGELGRFGPGLPKI-------SDGSMLFLM 340
             L+NPPFG + EKD          ++E       R+G    +         + S+L L 
Sbjct: 465 VILTNPPFGARVEKDLKISYADMFTDEEKIEEYTARYGEAYKEALKQVNDNINKSLLSLY 524

Query: 341 HLANKLEL---------PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            + + L               GGR  IVL    L N        ++R ++     I  IV
Sbjct: 525 KIGSGLTEVLFIERRLNLLVPGGRMGIVLPEGVLNNTNLQ----KVRDFVESKAKILLIV 580

Query: 392 ALPTDLFFRTNIATYLWILSNRK------------TEERRGKVQLINATDLWTSIRNEGK 439
           ++P D+F  +       +L  +K             E+   +V    A +L        K
Sbjct: 581 SIPQDVFIASGATVKPSLLFFKKFNEEEAKQYADIEEDATNEVNKKYADELSQIDAQLAK 640

Query: 440 KRRIINDDQRRQILDIYVSRENGKFSRML 468
           + +     ++++ L     +  G+ +  +
Sbjct: 641 RGKEALPQEKKKELRTQRKKIEGQKASEI 669


>gi|310831373|ref|YP_003970016.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386557|gb|ADO67417.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 817

 Score = 82.7 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 106/348 (30%), Gaps = 30/348 (8%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAK---AIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           L      N   ++   I     N +    + +D DF +     +K  +L  + ++ +   
Sbjct: 124 LIKSKDKNEGKSILEKIGDLLSNHRTTSRVVKDIDFINC----KKTNILISLIEDINEFC 179

Query: 145 LHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                     ++   YE  +  +     +   +F T R ++ +   L+   D      + 
Sbjct: 180 TKYHIFEYSDIIGIAYEFWMNEYKGGSGKELGNFFTERKLMRMCFELIDKEDIDNLNIN- 238

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               T+ D  CGT GF       + D    +        +G E E      C   ML   
Sbjct: 239 -KNSTIGDEFCGTFGFPLYFKQFLKDKYKINIKNKN--IYGVEFED---RACRMAML--- 289

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNG--E 320
             +    D   N+ +G +   ++         + N PFG + + K      +E++    +
Sbjct: 290 -NAMFSLDNIDNVTRGDSFITNVSP--HLDISVHNVPFGSRMKYKHVKEHYEEYQINHSD 346

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
           +  F   +   ++        +                ++       G         R+ 
Sbjct: 347 IPNFDEIIKSKANQDATLSSQMVIY-----KTNKIGICIIKDGQEATGTTKEL-LAYRKH 400

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
             ++  ++ I+ +P+  F  T   T          +    +   ++  
Sbjct: 401 FCDSVNLKKILKIPSGAFSSTGTKTLCLYFVKDGNKTENLQFLELDTE 448


>gi|111224792|ref|YP_715586.1| putative Type I restriction-modification system, M subunit [Frankia
           alni ACN14a]
 gi|111152324|emb|CAJ64058.1| Hypothetical protein; putative Type I restriction-modification
           system, M subunit [Frankia alni ACN14a]
          Length = 845

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 45/270 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            ++  L+R +    +       TPR +V L  AL +   D +          L+DP    
Sbjct: 298 TVFGDLLRHYELWDTHSGPPATTPRSLVELIMALFVRAGDQV---------HLHDPYARA 348

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G  L  A           K    +   G   +P+   +   G+ +   ++          
Sbjct: 349 GEMLLGAW----------KAAGSVTLSGSGADPDLCRLAEMGIRLSGGQARLTPGSPTPW 398

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           ++                 ++NPPF     +                +    P   + + 
Sbjct: 399 REA--------PAALADLIVTNPPFNATSTRA-----------PYDTWLFDPPPAHNDNY 439

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            +L H+   L      GG+A +V+ +    +      E  +R+ +L+   +E IVALP  
Sbjct: 440 AWLQHVLASLAP----GGKAGVVMPNRAAASDDDR--EQRLRQHMLDTGTVEFIVALPRQ 493

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLIN 426
           LF  T +A  LW L           V  + 
Sbjct: 494 LFAPTRVAAMLWGLRAP-GTRPGDDVLFLE 522


>gi|330899953|gb|EGH31372.1| Type I restriction-modification system methylation subunit
          [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 71

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
          +   L   ++K A+ L G    ++F + I     L+R     E     V  + +  G S 
Sbjct: 4  TLQQLERHLFKAADILRGKMDASEFKEYIFGMLFLKRCSDVFEERYEEVVAQEIRAGKSQ 63

Query: 67 ID 68
           +
Sbjct: 64 AE 65


>gi|288802385|ref|ZP_06407825.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica D18]
 gi|288335352|gb|EFC73787.1| putative type I restriction-modification system, M subunit
           [Prevotella melaninogenica D18]
          Length = 677

 Score = 82.3 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 148/470 (31%), Gaps = 107/470 (22%)

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKICK 138
           FY T+    ++ G       + +           IFE  D        L     L    +
Sbjct: 223 FYTTASERNNSDGQATVYKRIAAIFEEVKKKQGKIFEANDRIKLEPRTLSH---LVGELQ 279

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            +S ++   D          YE ++    S +     +F TPR+V+ +A A++       
Sbjct: 280 KYSLLDTRIDFK-----GKAYEEIVG---SNLRGDRGEFFTPRNVMQMAVAMI------- 324

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHV------------------------ADCGSHH 234
              +P     + D +CGTGGF+  AMN V                            +  
Sbjct: 325 ---APQEGEKVLDSSCGTGGFVVTAMNAVIATIKSKMQKDYGENLEDWPPVVRDAFNNKI 381

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--- 291
                    G ++ P+        M++         D S NI Q ++L       +    
Sbjct: 382 TEIAGENFFGFDINPDLVKATKMNMVMNN-------DGSGNIIQLNSLLPPHEWSEEKKQ 434

Query: 292 ---------------------FHYCLSNPPFGKKWEKDKDAVEKEHK------NGELGRF 324
                                F   ++NPPFG K   +   + ++          + G +
Sbjct: 435 LLEERMGRPKNSIVNHKTIDLFDVIVTNPPFGSKIPINDQQILEQFDLAHSWVKDQHGNW 494

Query: 325 -------GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                     +P       +F+  +   L      GGRAAIVL  S   +         I
Sbjct: 495 LMNSTKLRGSVPP----EQIFIERIVQLLRP----GGRAAIVLPDSIFSSPGLE----FI 542

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGK--VQLINATDLWTSI 434
           R WL+ +  I A + L  D F         +  +  + TEE + +  +  I    ++ ++
Sbjct: 543 RVWLMRHTHIIASIDLHADTFQPHNGTQCSILFVVKKTTEELQEEQNLGFIPDNQIFMAM 602

Query: 435 -RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIKVLR 482
             + G  +R     +R +  ++ +  E      +        YR+     
Sbjct: 603 VDHIGHDKRGNTIYKRDEEGNLILRHEENDVREVDATTGEVTYRKETFEE 652


>gi|332639087|ref|ZP_08417950.1| hypothetical protein WcibK1_10375 [Weissella cibaria KACC 11862]
          Length = 154

 Score = 82.3 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 41/139 (29%), Gaps = 12/139 (8%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M + T     + + +W+ A+ L G    + +  V+L    L+ +  +      ++     
Sbjct: 1   MAKKTAEL-KIEDALWQAADQLRGSMDASQYRNVVLGLIFLKYVSDSFNEKYESLI---- 55

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF-------SDNAKA 113
                    +  +  A   F+   E     + S      +   I          +D  K 
Sbjct: 56  NSDYPEDAEDRDMYTAENIFWLPKEARWDVIASAAKTPEIGETIDKAMEAIERENDQIKG 115

Query: 114 IFEDFDFSSTIARLEKAGL 132
           +      S  + +     +
Sbjct: 116 VLPKNYASPDLDKGADVKI 134


>gi|228476637|ref|ZP_04061317.1| type I restriction enzyme EcoR124II M protein [Streptococcus
           salivarius SK126]
 gi|228251735|gb|EEK10809.1| type I restriction enzyme EcoR124II M protein [Streptococcus
           salivarius SK126]
          Length = 100

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 14/100 (14%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           YE+LI  + +   +   +F TP+ V  L   + +   + + K        +YDP  G+G 
Sbjct: 1   YEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHKQETVNK--------IYDPAAGSGS 52

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            L  A  H  +              GQE+   T+ +    
Sbjct: 53  LLLQAKKHFDNHIIEEG------FFGQEINHTTYNLARMN 86


>gi|301598198|ref|ZP_07243206.1| putative restriction-modification protein [Acinetobacter baumannii
           AB059]
          Length = 217

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 90/252 (35%), Gaps = 42/252 (16%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G+E+      +    M++         D    I Q  TL   + +   +   ++N PF
Sbjct: 1   MFGREITSNA-KLAKMNMILHG-------DGHSGICQIDTLQNPIESE--YDVVITNMPF 50

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +K         K  K              +DG  + ++H     +     GGR A+V+ 
Sbjct: 51  SQKTSYSHLYENKLAK--------------NDGDGVCVLHCFKATKK----GGRMALVVP 92

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRG 420
              LF          +R++L EN  ++A+V+LP ++F     + T +   +N        
Sbjct: 93  EGFLFKAALAP----VRKYLFENAQLKAVVSLPKEVFLPYAKVKTNILYFTNCHNGRTNS 148

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR-TFGYRRIK 479
            V   N T+   S+ +    RR I+++  + +        +   S    Y    G+ ++ 
Sbjct: 149 DVFYYNVTNDGLSLDSF---RRKIDENDLKNL-----DFADLNKSDFDKYYNELGFLKVN 200

Query: 480 VLRPLRMSFILD 491
                   +I +
Sbjct: 201 PELIRSNDYIYN 212


>gi|283954609|ref|ZP_06372127.1| hypothetical protein C414_000240012 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793801|gb|EFC32552.1| hypothetical protein C414_000240012 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 687

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98
            +  ++      +++ L    + ++ E         F    +     L            
Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237

Query: 99  --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147
                +Y  S S+  + I + FD     +       EK  L    L     +   ++L  
Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   V+ + +E+L+ +           + TPR V+ +   +L          +P    
Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342

Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249
           ++ D   G+ GF      +V                   +  S  +        G + + 
Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402

Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285
           ++  V     ++     ++     S +  +     KD                       
Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKN 462

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   ++NPPF    ++ +     E    E G+    + +     +LF+    + 
Sbjct: 463 QNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+     GGR AIVL      N    S +  IR ++ +   I A+V L  ++F   T   
Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570

Query: 405 TYLWILSN 412
           T +  L  
Sbjct: 571 TSVLFLQK 578


>gi|163785235|ref|ZP_02179907.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879497|gb|EDP73329.1| N-6 DNA methylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 162

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 17/137 (12%)

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           E +IR+  +E DLIEA++ LP +LF+ T     + +L+  K  + + ++ LINA++ +  
Sbjct: 13  ERDIRKKFVEQDLIEAVILLPENLFYNTTAPGVIIVLNKNK--KHKEEILLINASEKYEK 70

Query: 434 IRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKT 493
               G+ + I+      +I ++Y + +  +    +         I      +  + L  +
Sbjct: 71  ----GRPKNILT--GIDEIAEVYHNWKEVEKFSKI---------ITKEEAQKNDYNLSPS 115

Query: 494 GLARLEADITWRKLSPL 510
               +  +     L   
Sbjct: 116 RYITIAEEEEIIPLDDA 132


>gi|32266590|ref|NP_860622.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449]
 gi|32262641|gb|AAP77688.1| type I restriction enzyme [Helicobacter hepaticus ATCC 51449]
          Length = 563

 Score = 81.9 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 142/424 (33%), Gaps = 65/424 (15%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +   +  +   + H+I +   + +     + TP ++  L   LL               +
Sbjct: 95  NDTSNHTI-EEFLHIITQ--KKTTHKLFSYSTPLEINELLVGLLDI----------KESQ 141

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++Y+P  GTG       N+                +G+ELE     +     + + L+ +
Sbjct: 142 SIYNPCYGTGSLFFAIANYAH----------SFELYGEELESSLARIAKI--ICKILDLN 189

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-P 326
            +  +  NI     L    F  ++F   + NPP                   E  RF   
Sbjct: 190 TQHLILNNI-----LKNAQFKNQKFDKIICNPPLDSHIGTQF--------LKEDERFATY 236

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                +   +LFL+H  + L+           +L +  L      S E  +R  L E  L
Sbjct: 237 EALIKTYPELLFLIHSLSHLKDKG------VFILRTQTLLKS---SLEGRLREKLCEEGL 287

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           IE+I+ LP ++F        + +LS          +  INA         +GK  R++N 
Sbjct: 288 IESIIELPKNIFPHQTHEFSIIVLSPNNRA-----ILHINANAP-HFYHKDGKYNRLVN- 340

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
              +++L+IY  +  G +S +          ++V R     +I +     +    +    
Sbjct: 341 --LKELLNIYRHKYVGTYSSLTPLSEIDPHDLRVAR-----YIQEPQSSRKNHTLLGALN 393

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVK---ESIKSNEAKTLKVKASKSFIVAFINA 563
           ++           K      +  G A+       + + +   K  K K  K  +  +  A
Sbjct: 394 INVFRGQRVYGSAKDEKITYFDLGIADFMDFGFSDELSTQRLKGDKSKIEKYQLKPYDIA 453

Query: 564 FGRK 567
              +
Sbjct: 454 LSIR 457


>gi|86150507|ref|ZP_01068732.1| dna methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85839102|gb|EAQ56366.1| dna methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. jejuni CF93-6]
          Length = 687

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98
            +  ++      +++ L    + ++ E         F    +     L            
Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237

Query: 99  --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147
                +Y  S S+  + I + FD     +       EK  L    L     +   ++L  
Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   V+ + +E+L+ +           + TPR V+ +   +L          +P    
Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342

Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249
           ++ D   G+ GF      +V                   +  S  +        G + + 
Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402

Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285
           ++  V     ++     ++     S +  +     KD                       
Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATRN 462

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   ++NPPF    ++ +     E    E G+    + +     +LF+    + 
Sbjct: 463 QNRDFNFDILMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+     GGR AIVL      N    S +  IR ++ +   I A+V L  ++F   T   
Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570

Query: 405 TYLWILSN 412
           T +  L  
Sbjct: 571 TSVLFLQK 578


>gi|315638642|ref|ZP_07893816.1| type I restriction/modification enzyme [Campylobacter upsaliensis
           JV21]
 gi|315481266|gb|EFU71896.1| type I restriction/modification enzyme [Campylobacter upsaliensis
           JV21]
          Length = 1191

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 122/430 (28%), Gaps = 50/430 (11%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            +L KI        +      ++ + +++E  + +    + +    F TP  + +     
Sbjct: 405 KILTKITNLIQDFYISQSE-NNQFLGDLFEGFLNK---SIHQTEGRFFTPTPITNFIIHS 460

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           L    D +          + D  CG G FLT+ + H                +G E   +
Sbjct: 461 LPHLQDDI---------KVLDFACGAGHFLTEFITH----------KSEAKLYGIEKNKD 501

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW--EKD 308
              V     L+   +           +   +  KD F  + F   LSNPP+  K      
Sbjct: 502 LSKVAKTACLLHNAKEAQVIFQDALDEIKESDKKD-FENESFDLILSNPPYSVKGFLSTL 560

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +++V K                 ++    F      K +          +VL  S L  G
Sbjct: 561 EESVLKNFTLSSAVENHY----KNNAIECF---FIEKAKQFLKPNALLVLVLPVSILQKG 613

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG--KVQLIN 426
                  + R  L EN  I +IV + +  F  T   T +      +         +   N
Sbjct: 614 GI---YEKTREVLFENFQILSIVEMSSRTFGSTGTQTIILFAKRMEKPYATELINILKEN 670

Query: 427 ATDLWTSIRNEG-KKRRIINDDQRRQILDIYVSREN----GKFSRMLDYRTFGYRRIKVL 481
           A D     R  G  +++ I       +   Y   ++       S  L           + 
Sbjct: 671 AFDDEILQREYGSSEKKDIIYKYCDFMAYDYADFKDFMSGLPLSENLKNNE-------IF 723

Query: 482 RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
           +     F   K    + +    + K +                + Y   + +    +  K
Sbjct: 724 KEYLSDFSTTKPKKFKKQKLKDFEKKALFDTYLKQKQEAIKDTKAYNKAYRDFKESKDYK 783

Query: 542 SNEAKTLKVK 551
             E      K
Sbjct: 784 ELEKALHYEK 793


>gi|258452701|ref|ZP_05700700.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282924136|ref|ZP_06331811.1| type I restriction-modification system [Staphylococcus aureus
           A9765]
 gi|257859676|gb|EEV82525.1| type I restriction-modification system [Staphylococcus aureus
           A5948]
 gi|282592931|gb|EFB97933.1| type I restriction-modification system [Staphylococcus aureus
           A9765]
          Length = 197

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 36/127 (28%), Gaps = 20/127 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E       E   A  G 
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQ------EYADALSGE 123

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123
           +I  +       Y            L +               FS   + I E  DF   
Sbjct: 124 DITYQEAWADEEYR---------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 171

Query: 124 IARLEKA 130
           I  L  A
Sbjct: 172 IEHLATA 178


>gi|126654680|ref|ZP_01726214.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
 gi|126623415|gb|EAZ94119.1| type II restriction-modification enzyme [Cyanothece sp. CCY0110]
          Length = 883

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/405 (15%), Positives = 125/405 (30%), Gaps = 79/405 (19%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSE--YSLSTLGSTNTRN--NLESYIASFSDNAKA 113
           +  +      + +  V   G +  N  +    +++L     +   N+ SY  +  +N   
Sbjct: 248 QDESEKEDGQEYDFQVYQYGNNIENQDKVYERINSLYRRALKEQLNISSYQNANDEN--- 304

Query: 114 IFEDFDFSSTIARLEKAGLLYKI--CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           +     F           L+Y +   + FS +E         ++ + +E + R       
Sbjct: 305 VINRNKFPV-------NKLVYTVQQLETFSFLEGRSSLDGKDILGDFFESITR---DGFK 354

Query: 172 EGAEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    F TP  +V+ L  AL +D        +   +  + DP+ G+G FL +AM  +   
Sbjct: 355 QTKGQFFTPTPIVNFLLYALQIDNLAIEKLNNDKELPFIIDPSAGSGTFLVEAMKIITKE 414

Query: 231 -------------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
                                                +  EL  +        M++    
Sbjct: 415 LKYKQHGQIKSSRGVKDRFEELFMPDRKENKWAREYLYACELNFDLGTASKVNMILHGDG 474

Query: 266 SDPRRDLSKNI----------------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           S         +                     L  D     +F   ++NPPF        
Sbjct: 475 STNIFVQDGLLPFRYYIKETKPNYLETVSSDILYNDKEVNAKFDVVITNPPFSVD----- 529

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++++ +      F  G     +   LF+      L+     GGR  ++L  S      
Sbjct: 530 --LDRQTQREVKNIFLFG--DRKNSENLFIERYYQLLKE----GGRLGVILPESVFDTTE 581

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
                  IR +L +   I+A+++LP  +F   T+  T L     +
Sbjct: 582 N----KYIRLFLFKYFQIKAVISLPKIVFEPFTSTKTSLLFAQKK 622


>gi|293363450|ref|ZP_06610207.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
 gi|292552970|gb|EFF41723.1| N-6 DNA Methylase [Mycoplasma alligatoris A21JP2]
          Length = 108

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  +  E  +   +F TP++V  L   L L   +   K     + T+YDP CG+G  L  
Sbjct: 1   MAMYAGEAGKSGGEFFTPQEVSELLARLTLIDFNHPNKNDKIKVSTVYDPCCGSGSLLLK 60

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
               +       K       +GQE+   T+ +    M +  +       
Sbjct: 61  FAKIL------GKENVTDSFNGQEINHTTYNLARINMFLHDINFHKFHI 103


>gi|38505785|ref|NP_942404.1| type I restriction-modification system M subunit [Synechocystis
          sp. PCC 6803]
 gi|38423809|dbj|BAD02018.1| type I restriction-modification system M subunit [Synechocystis
          sp. PCC 6803]
          Length = 59

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 7  SAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
          S  ++ NFIW  A+D L   +    +  VILP T++RRL+  LEP++  V 
Sbjct: 5  SHNNIVNFIWGIADDVLRDVYVRGKYRDVILPMTVIRRLDAVLEPSKEKVL 55


>gi|159901785|ref|YP_001548030.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894824|gb|ABX07902.1| N-6 DNA methylase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 623

 Score = 81.2 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 82/485 (16%), Positives = 145/485 (29%), Gaps = 79/485 (16%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYK---------ICKNFSGIE 144
           +    L      F   AK I +D      IA L  +   L           +      I+
Sbjct: 3   DIAAGLNEIWKIF--RAKGIVDDLLIIDHIATLLLEQNSLSPPSGLQGEPVLLPKVDEIK 60

Query: 145 LHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
                +   +     E   R   F  + +     + TPR +V     +     +      
Sbjct: 61  TRLSALSTLLEGGAAELFDRYILFRLDQTHLGGRYPTPRHLVKFMRTIAHVTAND----- 115

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                +L D  CG+GG L          G         + +G E+ P+   +  A   + 
Sbjct: 116 -----SLLDLACGSGGML---------AGRAQSAEHPTLTNGLEISPQWARLAWANCALH 161

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            L+          I+    L+         +  L NPPFG +   +  +   E +     
Sbjct: 162 GLKDFT-------IEIADALTYPQ--AISVNRILMNPPFGTQVSTEGLSGRSETRL---- 208

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                           +      L       GR  ++  +  LF G     E E+R+ L 
Sbjct: 209 ----------------IEQAIKWLAD----NGRLCVLAPAGILFGGGR---EKELRKNLC 245

Query: 383 ENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            N  I AI+ALP D F  F T + TYL +++    +     ++      +    R+  K+
Sbjct: 246 TNQQINAIIALPKDTFQPFST-LQTYLLLITKSVPQAGTWFIRAERDGYMRGRGRDLTKQ 304

Query: 441 RRIIND-DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL-ARL 498
               +D      IL    +          D +   YR++ +     +        +  ++
Sbjct: 305 PTDASDFPLIESILGWDNTWNLTD-----DQQLLSYRQLTIDEERVLIIGAPAGSIFTQV 359

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIV 558
           E      K   L         K  +  +      +   ++       K  K K  K  +V
Sbjct: 360 ERYSQGSKHIFLINVGLDAQRKSYIVDLNDPIPIKLMTQQREDIITEKFSKSKEEKPKLV 419

Query: 559 AFINA 563
             +N 
Sbjct: 420 TLLNG 424


>gi|254462365|ref|ZP_05075781.1| type I site-specific deoxyribonuclease [Rhodobacterales bacterium
           HTCC2083]
 gi|206678954|gb|EDZ43441.1| type I site-specific deoxyribonuclease [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 697

 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 91/353 (25%), Gaps = 107/353 (30%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
            +     + V    +E  + R           F TPR +V     +L           P 
Sbjct: 237 YNLSDTSEDVKGVAFERFLGR---TFRGEIGQFFTPRTIVEFMVHML----------DPQ 283

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVAD----------------------------------C 230
               + DP  G+GGFL      V +                                   
Sbjct: 284 EGEIVCDPASGSGGFLIRVFEIVRESILADADKQYNRFKEEIEADKSLAEEERAKRLKAK 343

Query: 231 GSHHKIPPILV-------------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
               +                    +G +            M++                
Sbjct: 344 YEDIRSNLDQSVEGSRLWKLSNRCIYGTDANDRMARTSKMNMIMHGDGHGGVHHHDGF-- 401

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE------------HKNGELGR-- 323
               L+ +     RF   L+NPPFG   E     +  E             + GEL R  
Sbjct: 402 ----LNVNGIFEGRFDIILTNPPFGANVEPSDKILPSEIEVSPAAERRYLAEYGELYRES 457

Query: 324 ---------------FGPGLPKISD--GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                          F     + S     +LF+    + L+     GGR  IVL      
Sbjct: 458 QDRVKAHVNKPIASMFKLPATEKSKIKTELLFIERCLDLLKP----GGRMGIVLPEGIFN 513

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEE 417
           N         +R +  +   + A+V+LP + F  +   +   L  L    +EE
Sbjct: 514 NPSLT----RVREFTEDRAFLLAVVSLPAETFVSSGASVKCSLLFLKKFTSEE 562


>gi|54020633|ref|YP_116154.1| hypothetical protein mhp646 [Mycoplasma hyopneumoniae 232]
 gi|53987806|gb|AAV28007.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 529

 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 64/439 (14%), Positives = 132/439 (30%), Gaps = 95/439 (21%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           N +  + R++ S  ++   +  TP  +  L   L+                 + DPTCG+
Sbjct: 2   NAFLKVFRKWNSADAKEKGEVFTPDHIAQLMYDLIQVDAMNDV---------VLDPTCGS 52

Query: 217 GGFLTDA--------MNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVA 257
           G FLT+A         +   +     +                   G E       +   
Sbjct: 53  GTFLTNAMANMFQDVYSFFKNKKLSKEKEEQYSNQVCKDIKSNKLIGIEFNEFNATLAGI 112

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            ML+         D S NI Q     +      ++   L NPPF +K             
Sbjct: 113 NMLLHG-------DGSSNIIQKDCFKELPLLKDKYSKVLMNPPFSQKES----------- 154

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                             + F+      L+      G+ A ++  S L      + E   
Sbjct: 155 -----------------ELKFVYVTLENLKEK----GKIAAIVPKSSLNGRVKANVEYLK 193

Query: 378 RRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           + +++    +  I++LP D+F     + T + +L     E+ + K+Q             
Sbjct: 194 KIFMMAK--VSHIISLPRDVFQPNAGVNTSIIVLEKYSQEKIK-KIQ------------K 238

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSR----MLDYRTFGYRRIKVLRPLRMSFILDK 492
              K + I +  +   L   +   +  F            F  +  ++ + L+  F   +
Sbjct: 239 LASKNKEIEEHTQNIFL---IDFSDDGFVYANERRYKTDKFALKIKELQKILKGQFSPLQ 295

Query: 493 T--GLARLEADITWRKLSPLHQSFWLDIL--KPMMQQIYPYG-WAESFVKESIKSNEAKT 547
                 R + ++++ + +        + +  K M +                 K N +K 
Sbjct: 296 ALKRNLRFDEELSFERFNTNRTFNIKESVFKKYMKENFASKVLSGIENQVILKKKNLSKY 355

Query: 548 LKVKASKSFIVAFINAFGR 566
             +K     I   ++   +
Sbjct: 356 KNIKFKFFAIDKILDFISK 374


>gi|229491839|ref|ZP_04385660.1| type II restriction-modification system DNA adenine-specific
           methylase [Rhodococcus erythropolis SK121]
 gi|229321520|gb|EEN87320.1| type II restriction-modification system DNA adenine-specific
           methylase [Rhodococcus erythropolis SK121]
          Length = 589

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 84/252 (33%), Gaps = 34/252 (13%)

Query: 183 VVHLATALL--LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           +  +  +LL                +  + DP C  G  L    +   D          +
Sbjct: 112 LAQVMVSLLPEWIAPHNPVASDDANVPIVLDPACAGGTVLAAVADLFGD---------RV 162

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--RFHYCLSN 298
              GQ+++ E  A   A +L+R    D R D    +Q G +   + F          +  
Sbjct: 163 ALVGQDIDEE--AASEAALLLRGRPDDVRYD----VQSGDSFLDNRFEKYLGEAAAVVCE 216

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP G+             +     R+  G+P   +  + ++ H    L      GG A +
Sbjct: 217 PPLGQSRWPMD-------ELATDPRWEFGIPSARESELAWVQHCYAHLRP----GGVAVV 265

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
           +            S    IR  L+   ++  ++ALP+ L    +   Y+W+L        
Sbjct: 266 M----VSMRTCMQSSGQHIRAALVRAGVLRDVIALPSGLGSLPDTDLYVWVLQKPIGHPE 321

Query: 419 RGKVQLINATDL 430
              V++ + + L
Sbjct: 322 FAPVRMTDLSGL 333


>gi|290956158|ref|YP_003487340.1| N-methyltransferase [Streptomyces scabiei 87.22]
 gi|260645684|emb|CBG68775.1| putative N-methyltransferase [Streptomyces scabiei 87.22]
          Length = 539

 Score = 80.8 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 80/222 (36%), Gaps = 34/222 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TL+DP CG G  L                    + +GQE +  +            L +D
Sbjct: 158 TLFDPACGIGTLLLAV-----------GPDRGPLRYGQESDARSACFAQ-------LRAD 199

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               +  +I  G +L  DL+   +    + +PP G       D      +     R+  G
Sbjct: 200 LTGRVGVDIGTGDSLRGDLWADVKADLVVCDPPVG-------DTDWGREELLLDSRWEFG 252

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            P  ++G + +L H           GGR  +V+ +S  +          IR  L+   ++
Sbjct: 253 TPSRAEGELAWLQHAYAHTSP----GGRVLMVMPASVAYRKAGR----RIRAELVRRGIL 304

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKT-EERRGKVQLINAT 428
             + ALP        +  +LW L   +T  +    V++++ T
Sbjct: 305 TQVTALPPGTASSHALPVHLWHLRRPRTLGDAVTSVRMVDLT 346


>gi|303327178|ref|ZP_07357620.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863166|gb|EFL86098.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 737

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 96/317 (30%), Gaps = 79/317 (24%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL----LDPDDALFKESP-GMIR 207
            ++   +E ++R   S   +    + T  ++V      +    L          P   I 
Sbjct: 265 DIIGAFFEEILR---SGFKQDRGMYFTHDNLVRFMVEAVGLSTLTEVVWKKSNHPDNRIP 321

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------------PILVPHG 244
            + DP CG+G FL  AMN + +     +                              +G
Sbjct: 322 YIIDPACGSGTFLLHAMNTITNTIKKSEEKLVIDHDSEQFYRARLSNEQPNYWAENFIYG 381

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-----TLSKD-------------- 285
            + +          M++         D S +I +       +L  D              
Sbjct: 382 FDPKFIMAITAKVNMVLHG-------DGSAHIYKEDAFKSFSLYNDVRLRPCSDSQRSVP 434

Query: 286 -----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                    + F   +SNPPFG     +      +             P       LF+ 
Sbjct: 435 RANYSQDVCETFDVVISNPPFGITLPIESQRTLAKTFLLSNS-----TPSEG----LFIE 485

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L+      GR A+VL  S L          ++RR++     I++IV+LP ++F  
Sbjct: 486 RCFQLLKQK----GRLALVLPESLLN----AKEMVDVRRFIFRFFNIKSIVSLPRNIFID 537

Query: 401 TNIATYLWILSNRKTEE 417
           T   T L     +  EE
Sbjct: 538 TPTLTSLLFAQKKTAEE 554


>gi|88706060|ref|ZP_01103768.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71]
 gi|88699774|gb|EAQ96885.1| hypothetical protein KT71_11309 [Congregibacter litoralis KT71]
          Length = 115

 Score = 80.8 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 6  GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
           +  +LA  IW  A+ L GDF+ + +G+VILPF +LRRLEC LE ++  V  +     
Sbjct: 11 QNDNNLAADIWALADLLRGDFRQSQYGRVILPFAILRRLECVLEGSKVNVLAQVDENK 68


>gi|315924179|ref|ZP_07920405.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622581|gb|EFV02536.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 655

 Score = 80.4 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 82/243 (33%), Gaps = 38/243 (15%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + Y+ LI +      +    F TP D+  L  + L D             R + DP C
Sbjct: 108 LGDYYQWLIPK---TERQTRGIFYTPSDLAELMASHLAD------------ARRVLDPAC 152

Query: 215 GTGGFLTDAMNH------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           G G  L+   +              H+        G +++P    +    + ++  E   
Sbjct: 153 GAGSLLSAVYDFQMARCMDESQRDRHRTLLKDDLWGMDMDPAAVWLTRCRLALKSNEY-- 210

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                +NI  G  L  D    KRF   + NPP+          +    +     R+    
Sbjct: 211 --VYPRNILTGDALFSDKIATKRFDGVIVNPPYMGHRRMPFKRMAALRE-----RYSAVY 263

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
               D +  F       L+         A+ L  +  +   A +GE  +RR+L++   +E
Sbjct: 264 GDKGDLAYCFFALAHRVLKPKG-----CAVFL--TSRYFMEAQNGE-PLRRFLMQRMHVE 315

Query: 389 AIV 391
            ++
Sbjct: 316 TLI 318


>gi|167039870|ref|YP_001662855.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514]
 gi|300915312|ref|ZP_07132626.1| type I restriction-modification system M subunit
          [Thermoanaerobacter sp. X561]
 gi|166854110|gb|ABY92519.1| hypothetical protein Teth514_1225 [Thermoanaerobacter sp. X514]
 gi|300888588|gb|EFK83736.1| type I restriction-modification system M subunit
          [Thermoanaerobacter sp. X561]
          Length = 69

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 4  FTGSAASLANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR 56
             +  S+ NFIW  A+D L   +    +  VILP T++RRL+  LE T+ AV 
Sbjct: 2  DNQTYNSIVNFIWGIADDCLRDVYVRGKYRDVILPMTVIRRLDAVLEETKPAVL 55


>gi|312126614|ref|YP_003991488.1| N-6 DNA methylase [Caldicellulosiruptor hydrothermalis 108]
 gi|311776633|gb|ADQ06119.1| N-6 DNA methylase [Caldicellulosiruptor hydrothermalis 108]
          Length = 911

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 84/523 (16%), Positives = 152/523 (29%), Gaps = 103/523 (19%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSG 142
              L+       +  L+  +    +  K I   E   F+           L+   +    
Sbjct: 279 PAELAKRLEDKYKIALKDLLNYDEEKIKEIPLIERDKFTYE--------KLFYAVEKLQE 330

Query: 143 IELHPDTVP--DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA--L 198
           I L  +     + V+   +E +++    E  +    + T +++V      L     A   
Sbjct: 331 ISLTENVHSKEEDVLGLFFESILQN---EFKQSKGQYFTHKNIVRFLIYALELDKLAIYK 387

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------------ADCGSHHKIPPILV 241
             ++      + DP  G+G FL +AM  +                  +     + P    
Sbjct: 388 LNQTYPHFPYIIDPAAGSGTFLIEAMKIITKEVLKNKDKLKLTRALEEKIKDLEDPNRKH 447

Query: 242 ------PHGQELEPETHAVCVAGMLIRR---LESDPRRDLSKNIQQGSTLSKDLFTGK-- 290
                  +G E            M++     +       L      G       + GK  
Sbjct: 448 HWAEDYIYGIEPNTRLGLAAKLNMILHGDGNMNIFIEDGLMPFKINGKAFYTRKWKGKDV 507

Query: 291 ------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                             RF   +SNPPF  K E  +                       
Sbjct: 508 GLLAESEETNIYPKPINGRFDVVMSNPPFSIKIEAMRSYRHIRDTFVFYD--------KK 559

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +   LF+      L       GR  +VL  S             IR +L +   I+AI++
Sbjct: 560 NSENLFVERWFQLLAPK----GRLGVVLPESVFDTKEN----LYIRNFLYKYFKIKAIIS 611

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERR-GKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           LP + F   T+    L I   +  EE +  + +     + +  +RN    +  I +    
Sbjct: 612 LPKEAFEPYTSTKVSLLIAERKTDEEVKAWEDKWREYANEYNKLRNSKLIKFFIEN---D 668

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG-------------LAR 497
           +ILD +    +             Y ++ V   L  +   +                +  
Sbjct: 669 KILDSFRKLLDN------HNIEIDYSKVLVHDLLDDNLKNEIEAKIPQKNKNKFKDLVEE 722

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
           +E+     KL  L      +ILK  ++Q YP        KE +
Sbjct: 723 IESFKNKYKLDELDTEENKEILKRFLKQFYPQEQEFKSFKELL 765


>gi|319956396|ref|YP_004167659.1| n-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
 gi|319418800|gb|ADV45910.1| N-6 DNA methylase [Nitratifractor salsuginis DSM 16511]
          Length = 676

 Score = 80.4 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 64/376 (17%), Positives = 129/376 (34%), Gaps = 83/376 (22%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
            TL +T    N+   +   S   K +F           ++  G+ YKI            
Sbjct: 293 RTLSNTLLTENINKPVDGESQ-LKRVFSKI--------VDDLGIYYKI------------ 331

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +       ++  +    G    +  +  +TP  + +L   L     D+           
Sbjct: 332 GLTTDFTGKLFNEMYGWLGFSQDKLNDVVLTPSYIANLLVKLARVNKDS----------Y 381

Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           ++D   G+ G L  AMN +            +              G E+    + + + 
Sbjct: 382 VWDFATGSAGLLVAAMNEMINDARNTIASPEELAHKEAKIKAEQLLGLEVLSNIYMLAIL 441

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++         D S NI    +L+ D     ++ Y  +N  F                
Sbjct: 442 NMILMG-------DGSSNILNEDSLTFDG----KYGYGKTNERFPADA------------ 478

Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 F    P  ++G+ M+F+    N +       G AAI++  S    G   + E  
Sbjct: 479 ------FILNPPYSAEGNGMVFVEKALNMMNK-----GYAAIIIQGSA---GSGKAKEIN 524

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            R  +L+   + A + +P+DLF   +++ TY+++    +   +  +V+ I+ ++   +  
Sbjct: 525 KR--ILKKHTLIASIKMPSDLFIGKSSVQTYIYVFRVNEAHHKDERVKFIDFSNDGYTRS 582

Query: 436 NEGKKRRIINDDQRRQ 451
           N  + +  I D  R +
Sbjct: 583 NRKRAKNNIKDTDRAK 598


>gi|332829740|gb|EGK02386.1| hypothetical protein HMPREF9455_01656 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 885

 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 93/642 (14%), Positives = 179/642 (27%), Gaps = 121/642 (18%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLEC--------ALEPTRSAVREKYLAFGGSNIDLES 71
           +        +D+          + ++         AL+        +Y  F  S ++   
Sbjct: 125 DSFRDTL-SSDY--------FFKYIDSQSIRANLPALDDELINTISRYKRFIYSELN-GR 174

Query: 72  FVKVAGYSFYNTSEYS----------------LSTLGSTNTRNNLESYIASFSDNAK--- 112
                  +F+N   ++                L +L S   +      ++   DN     
Sbjct: 175 ISNEEISNFFNAIIFTRAFEDSREIDGSEQVLLKSLWSEKIQ--FSDILSLSFDNLDIKS 232

Query: 113 ---AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP-----DRVMSNIYEHLIR 164
               I    D  S I +L+K   L  I  +F      P            +S IYE  + 
Sbjct: 233 YPDQIINK-DLFSNINKLDK-NTLNNIFTDFYKSNRTPYKYDFSIISKHALSRIYEKYVS 290

Query: 165 RFG-------------------SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                                  EV++ +  + TP+ +    +  +   +  +       
Sbjct: 291 ILNIKETEIVQYNLFNNTPNPYEEVNKSSGSYYTPQFIARFFSRYIEKVNPNILNGD--- 347

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LIRRL 264
              + +P  G+G FL   + ++ D  S  K        G +            + L+  +
Sbjct: 348 -LKILEPAVGSGIFLRTLVENITDKRSIQKAFSN--LTGIDKNSTACDAAKLSLTLLHLV 404

Query: 265 ESDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            +      + NI    ++         +    +SNPPF          +  E +N     
Sbjct: 405 ITGELPKENLNIINQDSINYFTNNKNFKCDVVISNPPFIS-----YGLMSNEDRNKVKSF 459

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                    D  + F+    + L    N GG    VL ++ L    A      IR+ L  
Sbjct: 460 LAEYSYNKYDLYLSFVKIGIDSL----NEGGIGLFVLPNTFLVTDSA----KLIRKHLAN 511

Query: 384 NDLIEAIVALPT---DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI---RNE 437
              I  +V L +    +F    +   L I   +K  E+     +I     +         
Sbjct: 512 ECNILCLVDLSSVDYKIFEDAGVYPILLIFQKKKKREKITPSAIIATIKDYVGKALTDIL 571

Query: 438 GKKRRIINDDQRRQILDIYVSRE------------NGKFSRMLDYRTFGYRRIKVLRPLR 485
            +K           I   + ++E              K S+      F   R      L 
Sbjct: 572 AEKMSNNMSYNIFGISQEFFNKEKWHLLTPAESNLEIKLSKYKKLEDFLETRTGFASGLI 631

Query: 486 MSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEA 545
            +FI+ K+ + + E +I    L       +      +++    Y +       S      
Sbjct: 632 EAFIIPKSKIPKKEEEIYIPYLGDREMMKF-----SIIEDSQEYFFYPYLKNGSKIDEVT 686

Query: 546 KTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE---WIPD 584
              +   +   +  F N    +           G    W P+
Sbjct: 687 LKHRFPFTYKRLYQFYNTLSERSEV------KKGNMQWWEPN 722


>gi|323439091|gb|EGA96821.1| hypothetical protein SAO11_2090 [Staphylococcus aureus O11]
          Length = 491

 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 101/306 (33%), Gaps = 58/306 (18%)

Query: 92  GSTNTRNNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK--AGLLYKICKNFS-GI 143
                 N ++ Y+   + + +      I E F F     +L +  + L     K FS  +
Sbjct: 232 DGDKIYNAVQMYLKQ-NADIRPAKNGEILESFMFIKNDLKLNRIHSQLNMTPLKYFSVKL 290

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +         ++ + Y   + ++G          +TPR + +L   L+            
Sbjct: 291 KNKFVHNDMDILGSFYGEFV-KYGGNDGNALGIVLTPRHITNLMCELISINHTDF----- 344

Query: 204 GMIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                + DP CG+GGFL  AMN    +AD     K       HG EL           M+
Sbjct: 345 -----VLDPCCGSGGFLVTAMNKMFNLADTKEEIKSIKQNQIHGIELTQSLFTTATTNMI 399

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +R        D   N+++      D  +   + +  L NPP+ +   K+   + +     
Sbjct: 400 LRG-------DGKSNLRRDDVFHVDKEYYKDKINKILLNPPYSQAKTKNLSHLSEIS--- 449

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                             F+      ++     GG+ A ++  S +        +   +R
Sbjct: 450 ------------------FIKESLEYMKT----GGKLAAIIPQSTMI--GKTKNDKNYKR 485

Query: 380 WLLEND 385
            +LE  
Sbjct: 486 EILEKH 491


>gi|42779915|ref|NP_977162.1| type I restriction-modification system, M subunit, putative
           [Bacillus cereus ATCC 10987]
 gi|42735833|gb|AAS39770.1| type I restriction-modification system, M subunit, putative
           [Bacillus cereus ATCC 10987]
          Length = 613

 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 85/211 (40%), Gaps = 15/211 (7%)

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           +T ++ V  M+     +    ++   I+QG  L K  F  +  +    +           
Sbjct: 175 DTMSLDVFDMMQLGAYAYEISNIV--IKQGDVLKKPTFILEEGNLQQFDCVISIPAMGSI 232

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                EH   E GRF  G     D ++ ++ H     +      GRA I+     LF G 
Sbjct: 233 SPNVGEH--DEFGRFLFGRSSKRDATLDYVSHALASTKT----NGRAVILTLGGSLFRGG 286

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
               E ++R  + ++  +E ++   + +   T +A Y   L+  ++ +    +++++A++
Sbjct: 287 V---EEKVRTAIAKSRQVEGVIKFASSILLNTAVAPYALFLNRNQSLDVSPSIRMVDASE 343

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           +           +++ ++   +IL +Y S E
Sbjct: 344 IIGVQGRA----KVLENEHIERILSLYRSSE 370


>gi|323440114|gb|EGA97829.1| type I site-specific deoxyribonuclease [Staphylococcus aureus O11]
          Length = 125

 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 33/127 (25%), Gaps = 20/127 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123
               E++                  L +               FS   + I E  DF   
Sbjct: 69  AWADEAYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 110

Query: 124 IARLEKA 130
           I  L  A
Sbjct: 111 IEHLATA 117


>gi|254362802|ref|ZP_04978883.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
 gi|153094431|gb|EDN75279.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica PHL213]
          Length = 667

 Score = 80.4 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 102/312 (32%), Gaps = 69/312 (22%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E+        V+   +E+LI +           + TPR V+ +   +L           P
Sbjct: 298 EVKLFNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------DP 344

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---------LEPETHAV 254
               T+ D   G+ GF   ++ HV +     +          E         ++ +  A+
Sbjct: 345 KPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPEQTDYVKEKVFAI 404

Query: 255 ---CVAGMLIRRLESDPRRDLSKNIQQGSTL-------------SKDLF----------- 287
                A  + R L      D   N+   +TL               D++           
Sbjct: 405 DFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEDFTKEEEWNDVYGEGWKKLRKLR 463

Query: 288 ------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    +F   ++NPPF    ++ +     E      G+    + +     +LF+  
Sbjct: 464 KTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQSKVGR----DILFIER 519

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-R 400
             + L+     GGR AIVL      N    S +  IR ++ E   I A+V L  ++F   
Sbjct: 520 NLDFLKD----GGRMAIVLPQGRFNN----SSDKYIRDFIAERCRILAVVGLHGNVFKPH 571

Query: 401 TNIATYLWILSN 412
           T   T +  +  
Sbjct: 572 TGTKTSVLFVQK 583


>gi|315932183|gb|EFV11126.1| N-6 DNA Methylase family protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 687

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98
            +  ++      +++ L    + ++ E         F    +     L            
Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGVRDRTK 237

Query: 99  --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147
                +Y  S S+  + I + FD     +       EK  L    L     +   ++L  
Sbjct: 238 SLEFRNYGGSDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   V+ + +E+L+ +           + TPR V+ +   +L          +P    
Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342

Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249
           ++ D   G+ GF      +V                   +  S  +        G + + 
Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402

Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285
           ++  V     ++     ++     S +  +     KD                       
Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKN 462

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   ++NPPF    ++ +     E    E G+    + +     +LF+    + 
Sbjct: 463 QNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+     GGR AIVL      N    S +  IR ++ +   I A+V L  ++F   T   
Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570

Query: 405 TYLWILSN 412
           T +  L  
Sbjct: 571 TSVLFLQK 578


>gi|157415308|ref|YP_001482564.1| hypothetical protein C8J_0988 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386272|gb|ABV52587.1| hypothetical protein C8J_0988 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747951|gb|ADN91221.1| Type I Restriction Enzyme [Campylobacter jejuni subsp. jejuni M1]
          Length = 687

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 131/428 (30%), Gaps = 86/428 (20%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98
            +  ++      +++ L    + ++ E         F    +     L            
Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGVRDRTK 237

Query: 99  --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147
                +Y  S S+  + I + FD     +       EK  L    L     +   ++L  
Sbjct: 238 SLEFRNYGGSDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   V+ + +E+L+ +           + TPR V+ +   +L          +P    
Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342

Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249
           ++ D   G+ GF      +V                   +  S  +        G + + 
Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402

Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285
           ++  V     ++     ++     S +  +     KD                       
Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRVTKN 462

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   ++NPPF    ++ +     E    E G+    + +     +LF+    + 
Sbjct: 463 QNRDFNFDVLMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L+     GGR AIVL      N    S +  IR ++ +   I A+V L  ++F   T   
Sbjct: 519 LKP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570

Query: 405 TYLWILSN 412
           T +  L  
Sbjct: 571 TSVLFLQK 578


>gi|153951579|ref|YP_001397840.1| DNA methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152939025|gb|ABS43766.1| dna methylase-type I restriction-modification system [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 687

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 64/428 (14%), Positives = 129/428 (30%), Gaps = 86/428 (20%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98
            +  ++      +++ L    + ++ E         F    +     L            
Sbjct: 178 FDDLIKEDILKNQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237

Query: 99  --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147
                +Y  S S+  + I + FD     +       EK  L    L     +   ++L  
Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   V+ + +E+L+ +           + TPR V+ +   +L          +P    
Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342

Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249
           ++ D   G+ GF      +V                   +     +        G + + 
Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERSIEASHLFTAQEKIPECQDYVKEKVFGIDFDE 402

Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285
           ++  V     ++     ++     S +  +     KD                       
Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATKN 462

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   ++NPPF    ++ +     E    E G+    + +     +LF+    + 
Sbjct: 463 QNRDFNFDILMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L      GGR AIVL      N    S +  IR ++ +   I A+V L  ++F   T   
Sbjct: 519 LRP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570

Query: 405 TYLWILSN 412
           T +  L  
Sbjct: 571 TSVLFLQK 578


>gi|91216828|ref|ZP_01253792.1| type II restriction-modification enzyme [Psychroflexus torquis ATCC
           700755]
 gi|91184989|gb|EAS71368.1| type II restriction-modification enzyme [Psychroflexus torquis ATCC
           700755]
          Length = 1020

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 75/451 (16%), Positives = 138/451 (30%), Gaps = 76/451 (16%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           ++ RL    +       E  +A           +++A       S+    T    N    
Sbjct: 298 VIYRLSDLHKRGMKDYMELDVADVSEEDFDRELLRIA-------SQIDGETQEIKNMFKQ 350

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMS 156
           L  Y             +F F   I      E A ++ ++ K     ++  +      + 
Sbjct: 351 LRLYKN----------NEFAFKEVINERTFYENAEIVKEVVKLLETFKIKYEHKQKF-LG 399

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD---DALFKESPGMIRTLYDPT 213
           + +E L+      + + +  F TP  +       +       + +  +    +  + D  
Sbjct: 400 DFFERLL---NIGIKQESGQFFTPTPITTFICNSIPFEKVIENKINLKDNNFLPYVIDYA 456

Query: 214 CGTGGFLTDAMNHVADCGSHHKIP------PILVPHGQEL-----EPETHAVCVAGMLIR 262
           CG+G FL DAM+ +       K             +  +      +   + +     L +
Sbjct: 457 CGSGHFLNDAMDRIDKILQSIKNEEFRTNTQRDNFYAWKRAYKWAKEFVYGIEKDYRLAK 516

Query: 263 R--LESDPRRDLSKNIQQGSTL-----------SKDLFTGKR---FHYCLSNPPFGKKWE 306
              +      D    I  G  L             +    K+   F   ++NPPF  +  
Sbjct: 517 TTKVACFLNGDGEAKILYGDGLAPFNSKLYYGKLNNETGDKQNPVFDAIVANPPFSVESF 576

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           +    +  E+  G    +     K  D   LF+   +  L+      G A I+L S+ L 
Sbjct: 577 R----MVLENGKGTFDLYDQITDKSDDIECLFIERTSQLLKE----NGFAGIILPSTILL 628

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLI 425
           N        + R+ LLEN  I  +    T  F      T    +  R K E  +  V L 
Sbjct: 629 NRGIHQ---KARKLLLENFKICGLCEFGTKAFTYAGQPTIALFIKKREKVEIDKINVLLS 685

Query: 426 NATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +            KK    + D  + I+  Y
Sbjct: 686 D----------FKKKETDFSFDGIKNIISQY 706


>gi|222444446|ref|ZP_03606961.1| hypothetical protein METSMIALI_00057 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434011|gb|EEE41176.1| hypothetical protein METSMIALI_00057 [Methanobrevibacter smithii
           DSM 2375]
          Length = 456

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 83/524 (15%), Positives = 158/524 (30%), Gaps = 94/524 (17%)

Query: 1   MTEFTGSAASLANFIWKNAEDLW---------GDFKHTDFGKVILPFTLLRRLECALEPT 51
           M E       + N I  +A  +          G          I      + L   +   
Sbjct: 1   MQENNHKQIEITNSI-NSANRMLVASGFHERSGAMTQ------IACLLGYKYLSNNISNN 53

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
              +  +           E  +   G          L  LG      N  + I + SD  
Sbjct: 54  SEDIGYELNE----EFRYEKLLINKGEVI------ELLKLGIEQITQN-NNSIQA-SDVF 101

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             +F+  DF+    R  K             I     +     +  I   +I+   ++  
Sbjct: 102 FDLFDMIDFN----RFNKNEFWLTFIDAVEKIC----SETTATIGEIMIFMIKYLSNDKR 153

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                             +L +    L   +   +  +YDP    G  L    N +    
Sbjct: 154 RDF-------------IFMLTEDSIKLLMANQKDVTNIYDPFADDGTLLAQIGNVINVEN 200

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                      +GQ    E   +    +L   +          +I       + +    +
Sbjct: 201 ----------YYGQHPNREKCIMAKMTLLTNDINYKNIFIKCNDII------EPIPWNVK 244

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG-PGLPKISDGSMLFLMHLANKLELPP 350
           F   ++  PFG K             N    RFG     ++S+ S L  + +   LE   
Sbjct: 245 FDLGVTISPFGIKGG---------RFNEMDVRFGNFAHKRLSEISYL--LDMFYNLEDD- 292

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G   I++  + L      S   +I ++L++N+ I  I+ LP  LF    + T L I+
Sbjct: 293 ---GTIRIIVPDAVL----RLSSNKKIFQYLVDNEFISTIIGLPGGLFGANGVLTALLII 345

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              KT + +G +  +N  ++    R+ GKKR   + +     + I  ++E  + +     
Sbjct: 346 --NKTPKNKG-IFYLNLRNV--KNRSLGKKR-ATSIEDIDNYIKILSNKEELELTSNTAT 399

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
                        L ++  +D   L  ++ + T   +  + +  
Sbjct: 400 IEDIKEN---DYNLAINRYVDSEKLEEIDIEQTIANIKAIKEEL 440


>gi|305431928|ref|ZP_07401095.1| DNA methylase-type I restriction-modification system [Campylobacter
           coli JV20]
 gi|304445012|gb|EFM37658.1| DNA methylase-type I restriction-modification system [Campylobacter
           coli JV20]
          Length = 687

 Score = 80.0 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 130/428 (30%), Gaps = 86/428 (20%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----- 98
            +  ++      +++ L    + ++ E         F    +     L            
Sbjct: 178 FDDLIKEDILKSQKRSLKNLVTEMEDEVLANAGVDVFEECFKLIFIKLFDELEGARDRTK 237

Query: 99  --NLESYIASFSDNAKAIFEDFD-----FSSTIARLEKAGL----LYKICKNFSGIELHP 147
                +Y  S S+  + I + FD     +       EK  L    L     +   ++L  
Sbjct: 238 SLEFRNYGESDSELKQKIEKLFDKAKKKWEGVFNNDEKIKLSPSHLSVCVSSLQNVKLFN 297

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   V+ + +E+L+ +           + TPR V+ +   +L          +P    
Sbjct: 298 SNLE--VIDDAFEYLVNK---SSKGEKGQYFTPRYVIDMCVKML----------NPKKDE 342

Query: 208 TLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQELEP 249
           ++ D   G+ GF      +V                   +  S  +        G + + 
Sbjct: 343 SMIDTASGSCGFPIHTCFYVWRSIYKERGIEASHLFTAQEKISECQDYVKEKVFGIDFDE 402

Query: 250 ETHAVCVA-GMLIRRLESDPRRDLSKNIQQGSTLSKD----------------------- 285
           ++  V     ++     ++     S +  +     KD                       
Sbjct: 403 KSVRVSKMLNLIAGDGHTNVLYLNSIDFDRWDEWVKDDEDWQDVYFEGFKRLKNLRATKN 462

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F   ++NPPF    ++ +     E    E G+    + +     +LF+    + 
Sbjct: 463 QNRDFNFDILMANPPFAGDIKESRILARYELGKKENGKPQSKVGR----DILFIERNLDM 518

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L      GGR AIVL      N    S +  IR ++ +   I A+V L  ++F   T   
Sbjct: 519 LRP----GGRMAIVLPQGRFNN----SSDKYIREFIAQKARILAVVGLHGNVFKPHTGTK 570

Query: 405 TYLWILSN 412
           T +  L  
Sbjct: 571 TSVLFLQK 578


>gi|282866313|ref|ZP_06275359.1| N-6 DNA methylase [Streptomyces sp. ACTE]
 gi|282558899|gb|EFB64455.1| N-6 DNA methylase [Streptomyces sp. ACTE]
          Length = 717

 Score = 79.6 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 30/210 (14%)

Query: 207 RTLYDPTCGTGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           RT+ DP  GTG  L      A  +  +  +       L                      
Sbjct: 215 RTVLDPAAGTGALLRAVGGPAALYAQEADAGLAALTALRLALHSENASGTP--------- 265

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
              S      +  ++ G TL  D F        L +PPF ++    +       +     
Sbjct: 266 --SSSGAARGTITVRTGDTLRADAFPRLAADAVLCHPPFNERNWGHE-------ELAYDP 316

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           R+  G P  ++  + ++ H  ++L      GG A +++  +        SG   +R  LL
Sbjct: 317 RWEYGFPARTESELAWVQHALSRLRE----GGTAVLLMPPAAASR---RSG-RRVRADLL 368

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSN 412
               + A++ALP        I  +LW+L  
Sbjct: 369 RRGALRAVIALPAGAAPPYGIPLHLWVLRK 398


>gi|148927590|ref|ZP_01811061.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
 gi|147887066|gb|EDK72563.1| N-6 DNA methylase [candidate division TM7 genomosp. GTL1]
          Length = 330

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 18/158 (11%)

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S+  + F+ H+ ++L++     G+AA+++  + LF G AG     IR+ LL+   I 
Sbjct: 156 TTTSNKQLNFVQHICSQLKVD----GKAAVIVPDNVLFEGGAG---ETIRKKLLQTTEIH 208

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK--KRRIIND 446
            I+ LPT +F+   +   +    NR   +   +VQ  +   ++    N+    K + + +
Sbjct: 209 TILRLPTGIFYANGVKANVIFFDNRPASK---EVQTKD-VWVYDMRTNQHFTLKEKKLAN 264

Query: 447 DQRRQILDIY-----VSRENGKFSRMLDYRTFGYRRIK 479
                 +  Y       R   +  +   Y     R   
Sbjct: 265 ADLADFIKCYNPDNRHQRSETERFKKFTYDEVVTRDKT 302


>gi|315196848|gb|EFU27192.1| type I restriction-modification system, methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 136

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123
               E +                  L +               FS   + I E  DF   
Sbjct: 69  AWADEEYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 110

Query: 124 IARLEKA 130
           I  L  A
Sbjct: 111 IEHLATA 117


>gi|149919925|ref|ZP_01908400.1| type II restriction-modification enzyme [Plesiocystis pacifica
           SIR-1]
 gi|149819198|gb|EDM78632.1| type II restriction-modification enzyme [Plesiocystis pacifica
           SIR-1]
          Length = 777

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 106/342 (30%), Gaps = 62/342 (18%)

Query: 153 RVMSNIYEH-LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  ++E  L+RR        A  F TP  +                +  PG +R + D
Sbjct: 125 DTLGQLFEGGLVRR----ARRDAGVFFTPASLADFVVQ----ETLGRSQRDPGSLR-VLD 175

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG G FL  A   V                G +   E  AV    + +   ++  R +
Sbjct: 176 PACGGGAFLLAAHRAVRRATGKEGALAN--FFGVDKNGEALAVARRALWLEHAKAQGRLE 233

Query: 272 LSK-----NIQQGSTLSKDLFTG----------------------KRFHYCLSNPPFGK- 303
            +      N++QG ++  D                           RF   L NPPF + 
Sbjct: 234 PAPAQLFTNLRQGDSVVDDPQVDPWAFDWSTGRRVGASAGASTWPARFDLILGNPPFVRH 293

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +      A  +E  +   G           G+ LF+ +   +       GGR   V+S+ 
Sbjct: 294 EQLGPFKAHWRERFSTYEG-----------GADLFV-YFIERGLELLAPGGRLGFVVSNK 341

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGKV 422
            L  G A    + +R  L  +  +E +V      +F   +    +  +           V
Sbjct: 342 WLRGGYA----ARLRERLARDCTVELLVDHGHAPVFAGADAFPCVLCVRKG-PPAPTHAV 396

Query: 423 QLI----NATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           Q+I    +A       R+       +     R ++     R 
Sbjct: 397 QVIQGGRSAERFAVPQRSLAAAPWSLEPPAVRALVAALRERA 438


>gi|270668326|ref|ZP_06222521.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270316699|gb|EFA28484.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 149

 Score = 79.2 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 16/139 (11%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIELHP 147
                ++E+    F  + + I   F DF +T  RL     +K   L  + K  + ++   
Sbjct: 20  KQIFTDIENSATGF-PSEQDIKGLFADFDTTSNRLGNTVKDKNDRLTAVLKGVAELDFGK 78

Query: 148 DTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                  +  + YE+LI  + +   +   +F TP+ V  L   + +    ++ K      
Sbjct: 79  FEDNHIDLFGDAYEYLISNYAANAGKSGGEFFTPQSVSKLIAQIAMHGQTSVNK------ 132

Query: 207 RTLYDPTCGTGGFLTDAMN 225
             +YDP  G+G  L  A  
Sbjct: 133 --IYDPAAGSGSLLLQAKK 149


>gi|322513898|ref|ZP_08066976.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976]
 gi|322120267|gb|EFX92217.1| restriction enzyme alpha subunit [Actinobacillus ureae ATCC 25976]
          Length = 595

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 121/384 (31%), Gaps = 76/384 (19%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK 135
             F N    +L+     + R NL+    +  +S+    + E+ D                
Sbjct: 192 EPFRNKIYDTLAKSLQEHRRQNLKIDILLEVYSEIRMNVVENQD---------DINSFID 242

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
              + S      +   + VM   +    R    +    +    TP  +      L+    
Sbjct: 243 SVIDISHSVNSDNWNGEDVMGIFFNEFNRY---KKKSESGQVFTPEHITSFMYDLIGVSH 299

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAM-NHVADCGS----HHKIPPILVPHGQELEPE 250
           +            + D TCG+GGFL  AM N + + G       +        G E + E
Sbjct: 300 ND----------KVLDATCGSGGFLVKAMANMIKEVGGINTIEAENIKKYQLFGIEFDRE 349

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
             A+  A MLI        +D   N++Q  T        +   +  S P           
Sbjct: 350 IFALACANMLIH-------KDGKTNLEQLDT-----RETQACEWIKSKP----------- 386

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
            + K   N    R   G  K           +   +      G + A +L    L     
Sbjct: 387 -ITKVLMNTPYER-KYGCKK-----------IVENVLENVPIGTKCAFILPDKKL----- 428

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              E +    LL+   +E+I+ LP  LF    + T +++    K ++ R         D 
Sbjct: 429 ---EKDKMGGLLKKHTLESIIKLPESLF-DAGVTTSVFVFETGKPQKERKIFACYMEDDG 484

Query: 431 WTSIRNEGKK--RRIINDDQRRQI 452
              ++N+G+   +    + +R  +
Sbjct: 485 LERVKNQGRHDIKNRWAEIERYWL 508


>gi|320143299|gb|EFW35083.1| hypothetical protein HMPREF9529_01245 [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 135

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123
               E +                  L +               FS   + I E  DF   
Sbjct: 69  AWADEEYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD-- 110

Query: 124 IARLEKA 130
           I  L  A
Sbjct: 111 IEHLATA 117


>gi|270685245|ref|ZP_06222844.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
 gi|270316187|gb|EFA28160.1| putative type I restriction-modification system, M subunit
           [Haemophilus influenzae HK1212]
          Length = 112

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHK 317
           M +  +  D       +I  G+TL +  F   + F   +SNPP+  KW    D       
Sbjct: 1   MFLHNINYDKF-----DIALGNTLMEPQFGDDKPFDAIVSNPPYSVKWAGSDDPT----- 50

Query: 318 NGELGRFGPG--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                RF P   L   S     F++H  + L    +  GRAAIV      + G A   E 
Sbjct: 51  LINDERFAPAGVLAPKSKADFAFILHALSYL----SAKGRAAIVSFPGIFYRGGA---EQ 103

Query: 376 EIRRWLLEN 384
           +IR++L++N
Sbjct: 104 KIRQYLVDN 112


>gi|258452977|ref|ZP_05700970.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5948]
 gi|257859187|gb|EEV82042.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus A5948]
 gi|315198094|gb|EFU28426.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 136

 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123
               E +                  L +               FS   + I E  DF   
Sbjct: 69  AWADEEYR---------------EDLKAELIDQVGYFIEPEDLFSAMIREI-ETQDFD-- 110

Query: 124 IARLEKA 130
           I  L  A
Sbjct: 111 IEHLATA 117


>gi|167945633|ref|ZP_02532707.1| type I restriction-modification system, M subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 91

 Score = 78.5 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       GR A++ S S L+ G +     +IR+ L+E++L++A+V LP  L   T+I 
Sbjct: 1   MLASLNQDHGRMAVITSLSVLYRGGSD---GDIRQRLIEHNLLDAVVVLPDRLLPNTSIP 57

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIR 435
             + I    K ++    V  I+A++ +   R
Sbjct: 58  IAVLIFRMDKPDDS---VLFIDASNDYQFTR 85


>gi|229195089|ref|ZP_04321864.1| Type I restriction-modification system, M subunit [Bacillus cereus
           m1293]
 gi|228588318|gb|EEK46361.1| Type I restriction-modification system, M subunit [Bacillus cereus
           m1293]
          Length = 616

 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 86/212 (40%), Gaps = 15/212 (7%)

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
           +T ++ V  M+     +    ++   I+QG  L K  F  +  +    +           
Sbjct: 178 DTMSLDVFDMMQLGAYAYEISNIV--IKQGEVLKKPTFILEEGNLQQFDCVISIPAMGSI 235

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                EH   E GRF  G     D ++ ++ H     +      GRA I+     LF G 
Sbjct: 236 SPNVGEH--DEFGRFLFGRSSKRDATLDYVSHALASTK----ANGRAVILTLGGSLFRGG 289

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
               E ++R  + ++  +E ++   + +   T +A Y   L+  ++ +    +++++A++
Sbjct: 290 V---EEKVRTAIAKSRQVEGVIKFASSILLNTAVAPYALFLNRNQSLDVSPSIRMVDASE 346

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +           +++ ++   +IL +Y S EN
Sbjct: 347 IIGVQGRA----KVLENEHIERILSLYQSGEN 374


>gi|282928609|ref|ZP_06336207.1| LOW QUALITY PROTEIN: type I site-specific deoxyribonuclease subunit
           LldI hsdM [Staphylococcus aureus A9765]
 gi|282591920|gb|EFB96956.1| LOW QUALITY PROTEIN: type I site-specific deoxyribonuclease subunit
           LldI hsdM [Staphylococcus aureus A9765]
 gi|320142953|gb|EFW34747.1| hypothetical protein HMPREF9529_01597 [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 135

 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 32/127 (25%), Gaps = 20/127 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFSST 123
               E +                  L +               FS   + I E  DF   
Sbjct: 69  AWADEEYR---------------EDLKAELIDQVGYFIEPEDLFSAMIREI-ETQDFD-- 110

Query: 124 IARLEKA 130
           I  L  A
Sbjct: 111 IEHLATA 117


>gi|319940141|ref|ZP_08014494.1| type IIS restriction enzyme M protein [Streptococcus anginosus
           1_2_62CV]
 gi|319810612|gb|EFW06942.1| type IIS restriction enzyme M protein [Streptococcus anginosus
           1_2_62CV]
          Length = 690

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 114/341 (33%), Gaps = 61/341 (17%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             +  ++  +      +   V       ++  + R       +  +  +TPR V  L   
Sbjct: 319 KEIFTEVIDDLG--YFYKIGVDTDFTGKLFNIMFRWLSFAGDDQNDVVLTPRYVALLMAK 376

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPP 238
           L     D+           ++D   G+GG L  AMN +            +     +   
Sbjct: 377 LARVNKDS----------YVWDFATGSGGLLVAAMNLMLDDAKKEITSPDELREKEEKIK 426

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G E+ PE + + V  M++         D S NI Q  +L        ++ Y   N
Sbjct: 427 AEQILGIEILPEIYMLAVLNMILMG-------DGSSNILQDDSL---KKFDGKYGYGKDN 476

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
             F            +                  +G M F+    + ++     GG A+I
Sbjct: 477 ENFPADVFLLNPPYSE----------------TGNG-MNFVKRALSMMK-----GGYASI 514

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++  S    G   + E    + +LE++ + A + +P D+F   +N+ T +++    +  E
Sbjct: 515 IIQDSA---GAGKAKEIN--QKILEHNTLLASIKMPMDIFIGKSNVQTSIYVFKVGEKHE 569

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            + +V+ I+  +      N  K +   N       +  Y  
Sbjct: 570 AKHRVKFIDLRNDGYKRSNRKKSKASTNLQDVDNAVGRYEE 610


>gi|114332400|ref|YP_748622.1| type I restriction-modification system [Nitrosomonas eutropha
          C91]
 gi|114309414|gb|ABI60657.1| type I restriction-modification system [Nitrosomonas eutropha
          C91]
          Length = 92

 Score = 78.1 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 11 LANFIWKNAED-LWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL 69
          +++ IW  A+D L   +    +  VILPFT+LRRL+  LE T+ AV E+        +  
Sbjct: 15 ISDLIWNIADDRLRDMYVRGKYRDVILPFTVLRRLDAVLESTKQAVLERKKLLDTHKVAE 74

Query: 70 ES 71
          + 
Sbjct: 75 QD 76


>gi|322514821|ref|ZP_08067840.1| type I site-specific deoxyribonuclease [Actinobacillus ureae ATCC
           25976]
 gi|322119203|gb|EFX91344.1| type I site-specific deoxyribonuclease [Actinobacillus ureae ATCC
           25976]
          Length = 741

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 115/442 (26%), Gaps = 115/442 (26%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            +  +     G     E F++   +   N    ++   G  +  + +  +    + NA  
Sbjct: 170 KIMYERNKQKGKIFTKEEFLEQESHYEKNIRPVNVRRNGPKDDISYVTYWFDD-TKNAYK 228

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
             + F+    I    +      I +       +     D V    +E  +    +     
Sbjct: 229 AEQLFEDDEVIK--IRRESFLAILEKL--QIYNLSKTSDDVKGVAFEKFLG---TTFRGE 281

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TPR VV   T +L           P     + DP  G+GGFL +A  ++ +    
Sbjct: 282 LGQFFTPRSVVEFMTEIL----------DPQEGERVCDPCSGSGGFLINAFEYMRESIRQ 331

Query: 234 HKIPPILV---------------------------------------------------- 241
                                                                       
Sbjct: 332 DLEEEKESIKNRYFDEAYEQADEQQKANIEAKVDGLFSELNSELDLDNPNSRLYQLSHNC 391

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +G +  P    V    M++                    L+ +    +RF   L+NPPF
Sbjct: 392 IYGTDANPRMARVSKMNMIMHGDGHGGVHHNDG------LLNINGIFEERFDVILTNPPF 445

Query: 302 GKKWEKD----------KDAVEKEHKNGELGRFGPGLPKI---------------SD--- 333
           G +  KD               K  K         G  +                S    
Sbjct: 446 GSRVAKDLKLTQEDSLIDKPHYKNWKAKYENYERIGNERKLEIEENKVIVDKFEVSKFST 505

Query: 334 -GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              ++F+      L      GGR  IVL    L NG       ++R +      I  I +
Sbjct: 506 LTEVMFIERCLKLLRK----GGRMGIVLPKGVLNNGDLQ----KVRHYFESKAKIILITS 557

Query: 393 LPTDLF--FRTNIATYLWILSN 412
           +P D+F      +   +  L  
Sbjct: 558 IPQDVFVASGATVKPSIVFLKR 579


>gi|332202746|gb|EGJ16815.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA41317]
          Length = 179

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 11/184 (5%)

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F     ++T +
Sbjct: 3   TLKPGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAI 60

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            I +         KV   +   +     +   KR+ I+D+    I++ +   E     + 
Sbjct: 61  LIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQR 116

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            D   F    + V       + L       +E +    + + +      D+ K +   + 
Sbjct: 117 TDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEIILKKINDLEKEIQAGLA 172

Query: 528 PYGW 531
               
Sbjct: 173 ELEK 176


>gi|288561747|ref|YP_003429153.1| type II DNA modification (methyltransferase subunit) [Bacillus
           pseudofirmus OF4]
 gi|288548379|gb|ADC52261.1| type II DNA modification (methyltransferase subunit) [Bacillus
           pseudofirmus OF4]
          Length = 645

 Score = 77.7 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 105/339 (30%), Gaps = 57/339 (16%)

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           I     F  T   L+   +L  I K      I     +    +M + Y   +R +    +
Sbjct: 246 ILNQITFLETQLDLKNNNILRDILKELRDEVIPYFDTSSNYDIMGSFYSEFLR-YAGISN 304

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 +TP  +  L T L+                 ++DP  G+G FL   MN +    
Sbjct: 305 VKNGIVLTPAHITQLFTELVPI----------RPSDVIFDPAAGSGAFLIAGMNALIKKI 354

Query: 232 SHHK---------IPPILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGST 281
            +                   G EL    + + ++ ML     +S      S + +   T
Sbjct: 355 ENSNLADKQSKILNVKQKQLIGFELNSTMYTLSISNMLFRHDGKSQLYNLDSFSEEAKQT 414

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L +    G +      NPP+G K  K                     PK     + FL  
Sbjct: 415 LRRLAQDGIKPTIGFVNPPYGGKETKSDP-----------------TPK----EISFLKL 453

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-R 400
           L + +           ++   S  F           R  +L    ++ ++ +P DLF   
Sbjct: 454 LLDSVSDY------VIMIAPLSTYFKDET------TRNGILAQHTLKYVINMPADLFQPN 501

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
               T + +    + +  +  + +    D +   +N+G+
Sbjct: 502 AATITAISVFHVGQPQGDQETIMVDLVDDGFVLSKNKGR 540


>gi|315619743|gb|EFV00263.1| N-6 DNA Methylase family protein [Escherichia coli 3431]
          Length = 768

 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 111/321 (34%), Gaps = 61/321 (19%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E +   +       ++  + R  G    +  +  +TP  V  L   L     D+      
Sbjct: 416 EYYKIGLTTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLARVNKDS------ 469

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETH 252
                ++D   G+ G L  AMN +            +              G E+    +
Sbjct: 470 ----YVWDFATGSAGLLVAAMNEMLIDARENIHSPNELQLKEAQIKAEQLLGLEVLSSIY 525

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            + +  M++         D S NI    +L+       ++ +  +   F           
Sbjct: 526 MLAILNMILMG-------DGSSNILNKDSLAD---FDGKYGFGKTGEKFPADA------- 568

Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                      F    P  + G+ M+F+    + ++      G AA+++ SS    G   
Sbjct: 569 -----------FILNPPYSAKGNGMIFVQKALSMMDK-----GYAAVIIQSSA---GTGK 609

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
           + E    + +L+ + + A + +P DLF   +++ TY+++   +     +  V+ I+ ++ 
Sbjct: 610 ATEYN--KKILKENTLLASIKMPADLFIGKSSVQTYIYVFQVKIPHNAKQAVKFIDFSND 667

Query: 431 WTSIRNEGKKRRIINDDQRRQ 451
             +  N  K R  + D  R +
Sbjct: 668 GYARSNRKKARNNLVDADRAK 688


>gi|254415486|ref|ZP_05029246.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177667|gb|EDX72671.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 670

 Score = 77.7 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 46/226 (20%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              + TPR +V     L                 ++ D  CG+GGFL D           
Sbjct: 114 GGRYPTPRHIVKFMQRLAQLE---------PNNHSVADLACGSGGFLLD--------REI 156

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGK 290
                  V  G ++ PE   +  A   +           +  +  G+ L     + FT K
Sbjct: 157 TNPSSSEVTIGIDISPEWKRLAWANTRLH--------HFTPRLINGNALQVCGSEEFTKK 208

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   L NPPFG+K            +       G  +   S+ ++  L     KL    
Sbjct: 209 TFDRILINPPFGEKI----------DEKLAENTLGYKVSSRSETALTALA--LQKLAPA- 255

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
              G+AAI++ S  LF+      E ++RR L+ +  +EA+++LP D
Sbjct: 256 ---GKAAILVPSGLLFSNNTS--ERKLRRQLIFDYKLEAVISLPKD 296


>gi|25028882|ref|NP_738936.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|259507944|ref|ZP_05750844.1| type I restriction-modification system methylase [Corynebacterium
           efficiens YS-314]
 gi|23494169|dbj|BAC19136.1| putative type I restriction-modification system methylase
           [Corynebacterium efficiens YS-314]
 gi|259164439|gb|EEW48993.1| type I restriction-modification system methylase [Corynebacterium
           efficiens YS-314]
          Length = 598

 Score = 77.3 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 46/342 (13%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T++DP CG GG L    N              L   G +++     +      +  + + 
Sbjct: 138 TVFDPACGIGGTLLRLYN----------KQQNLALIGNDIDGVAVTIAQLHAYLAGIPAT 187

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                        +L+ ++    R    ++ PP G + ++D               F   
Sbjct: 188 FTHS--------DSLTSEIHGELRSQTIITEPPMGMRPDRDVQQNVLARAG-----FDAA 234

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               SD   LFL    + L      GG A ++ S++  F G +     +IR+ L+   L+
Sbjct: 235 GALTSDE--LFLYMALSNLTP----GGYAYVLTSTAAGFRGASQ----QIRQELVARGLV 284

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           EA++ LP+ L   + I T LW+L      +    + + +A+ +               D+
Sbjct: 285 EAVIQLPSRLLPYSGIPTLLWVLHRP-VGDPETSLLIADASTVSDP-----------QDE 332

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
             + + D+   RE    +R L           ++ P  +   L++  + R +       L
Sbjct: 333 IAQWLTDLRAGREIAIPARRLSLAELITNDGSIVPPALLRAELEEDEV-REDLKKAMSAL 391

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
           S   +      L   + +  P   + + +K+ I +N    ++
Sbjct: 392 SSSVKKLRDLDLDEQIVERVPSSRSFTNLKQLIDTNAITRIR 433


>gi|327390240|gb|EGE88583.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA04375]
          Length = 179

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 70/184 (38%), Gaps = 11/184 (5%)

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407
               GGRAA+++    LF   +      IR+ ++EN  ++A++++P+ +F     ++T +
Sbjct: 3   TLKPGGRAAVIVPDGVLF--GSSKAHKGIRQEIVENHKLDAVISMPSGVFKPYAGVSTAI 60

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            I +         KV   +   +     +   KR+ I+D+    I++ +   E     + 
Sbjct: 61  LIFTKT-GNGGTDKVWFYD---MKADGLSLDDKRQPISDNDIPDIIERFHHLEKEAERQR 116

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
            D   F    + V       + L       +E +    + + +      D+ K +   + 
Sbjct: 117 TDQSFF----VPVAEIKENDYDLSINKYKEIEYEKVEYEPTEVILKKINDLEKEIQAGLA 172

Query: 528 PYGW 531
               
Sbjct: 173 ELEK 176


>gi|67920388|ref|ZP_00513908.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
 gi|67857872|gb|EAM53111.1| Type I restriction-modification system, M subunit [Crocosphaera
           watsonii WH 8501]
          Length = 201

 Score = 77.3 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 36/195 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNT 96
              ++RL+  LE  +     K    G    +     +  G      + +S    L   ++
Sbjct: 35  LLFIKRLDD-LELAKEK---KAKRLGKPVQNPTFLPEKQG------ARWSYFKNL--DDS 82

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKA-------GLLYKICKNFSGIELHPDT 149
              L           K +      ++    ++ A        LL  +      I +    
Sbjct: 83  EEMLYMVRDVAFPFIKELGGKAGETAYTRHMKDAVFLISNPALLSNVVAQIEKIPMD--- 139

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  ++YE+++ +     +     F TPR ++ L   L+           P  +  +
Sbjct: 140 -DRDTKGDLYEYMLSKIA--SAGQNGQFRTPRHIIKLMVELM----------QPSPLEIV 186

Query: 210 YDPTCGTGGFLTDAM 224
            DP CGT GFL    
Sbjct: 187 CDPACGTAGFLVAVA 201


>gi|296277403|ref|ZP_06859910.1| type I restriction-modification system, M subunit [Staphylococcus
           aureus subsp. aureus MR1]
          Length = 110

 Score = 77.3 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 29/118 (24%), Gaps = 18/118 (15%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9   QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 68

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN--NLESYIASFSDNAKAIFEDFDFS 121
               E +                  L +               FS   + I E  DF 
Sbjct: 69  AWADEEYR---------------EDLKAELIDQVGYFIEPQDLFSAMIREI-ETQDFD 110


>gi|310828858|ref|YP_003961215.1| putative DNA modification methyltransferase [Eubacterium limosum
           KIST612]
 gi|308740592|gb|ADO38252.1| putative DNA modification methyltransferase [Eubacterium limosum
           KIST612]
          Length = 672

 Score = 76.9 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 113/384 (29%), Gaps = 52/384 (13%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +L  +GL+++  K F       +     V+  +YE  + R      +    F TP  +  
Sbjct: 81  KLTLSGLIWEDVKRFIEDTDSFENKNASVIGELYEECLHR---SHKKSQGIFYTPDVLAE 137

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------HKIPPI 239
              +L +         S      + DP CG+G  L+ A +++            HK    
Sbjct: 138 YMVSLCV---------SVVRKEKILDPACGSGSLLSAAYDYILKNTKDLEKETVHKRLLQ 188

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLS 297
               G + +P    V    + ++  +          I  G  L K    F    F   + 
Sbjct: 189 KSLCGVDKDPLAVLVTRITLALKGEKY----CYPAGIMVGDCLDKASADFKDSAFDVVIG 244

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+          ++ E+       +        D S  F       L+      GR  
Sbjct: 245 NPPY-----VGHKEIDSEYMKHLKAFYSDVYQNKGDLSYCFFKRGYELLKDK----GRLL 295

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIE----AIVALPTDLFFRTNIATYLWILSNR 413
            + S   +    A +    IR       LI+     ++           I   L +L   
Sbjct: 296 FLTSRYFMEAYNAQALRKFIREHFTIKRLIDFNGLRVIG-------GIGIDPALSLLVKG 348

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           +   R         +  +       +    I D +  Q   ++   E  + S+M D    
Sbjct: 349 RAPTRHA----ARVSRFFVQKGKLRETPVYIEDLESSQP-KLHEDFETSQ-SQMDDGLWR 402

Query: 474 GY--RRIKVLRPLRMSFILDKTGL 495
            Y  R   V+  +          L
Sbjct: 403 LYGPRTKTVVEKIEKRAPFTLENL 426


>gi|316985076|gb|EFV64029.1| type I restriction enzyme, modification chain [Neisseria
           meningitidis H44/76]
          Length = 173

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 83  TSEYSLSTLGST-NTRNNLESYIASFSD--NAKAIFEDFDFSSTIARLEKA----GLLYK 135
           T+   +  L +T +  + L   IA  ++  + K + +  DF+    +L K       L +
Sbjct: 8   TTFDDIVKLKNTADIGDRLNKIIAQIAEANDLKGVIDVTDFNDE-DKLGKGKEMIDRLSR 66

Query: 136 ICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           +   F  + L  +   D  +  + YE+L+R F +E  +    F TP +V  +   ++   
Sbjct: 67  LVGIFKKLNLSSNQAEDDDLLGDAYEYLMRHFATESGKSKGQFYTPAEVSRIMAKIIGIS 126

Query: 195 DD 196
            D
Sbjct: 127 AD 128


>gi|166363242|ref|YP_001655515.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
 gi|166085615|dbj|BAG00323.1| type I restriction-modification system DNA methylase [Microcystis
           aeruginosa NIES-843]
          Length = 352

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 12/186 (6%)

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
             AG  E ++R+ L+E   ++ ++A+ ++ F+  ++   LW L+  K  E + K+ +I+A
Sbjct: 6   SSAGRDEGKVRQKLIETGTVDIMIAIRSNFFYTRSVPCELWFLNRGKPAELQDKILMIDA 65

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
            +++   R   +     + +Q + IL I ++ R     S+       GY +  + R  + 
Sbjct: 66  RNIY---RKVNRTINDFSPEQLQNILSIVWLYRSE---SKRFIDLVVGYCQ-SIDREYQG 118

Query: 487 SFILDKTGLARL----EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           S  L +     L    EA   +  L       WL++                F   S  +
Sbjct: 119 SIALLQNYCEHLDKLTEALEKFYNLIDEKDGTWLELRTASELFKDDIDKYAGFAPISYNA 178

Query: 543 NEAKTL 548
           ++ +TL
Sbjct: 179 DDLETL 184


>gi|170025880|ref|YP_001722385.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|169752414|gb|ACA69932.1| type I restriction-modification system, M subunit [Yersinia
           pseudotuberculosis YPIII]
          Length = 100

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 17/102 (16%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IW++A  +    +  ++   IL F   + L   L                  
Sbjct: 2   NKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQL----------VQFVTRQG 51

Query: 67  IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           +  E    +      N  +         N      +Y   FS
Sbjct: 52  MTPEDIKAL------NEEDADTVKYVQDNLG-YFIAYDNLFS 86


>gi|126459362|ref|YP_001055640.1| N-6 DNA methylase [Pyrobaculum calidifontis JCM 11548]
 gi|126249083|gb|ABO08174.1| N-6 DNA methylase [Pyrobaculum calidifontis JCM 11548]
          Length = 504

 Score = 76.9 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 132/381 (34%), Gaps = 41/381 (10%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            N  N L +Y  S + + + IF           L     L +I +  + I+     +   
Sbjct: 61  KNIANELFNYAISKTGDFEEIFGVNTVDRLPFMLTSLPKLKEIVRYLNQIKW--SDISVD 118

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+  ++E LI     E         T   +V L    +         +  G    L DP 
Sbjct: 119 VIGRVFEGLI---YEERRHLLGQHYTDTKIVDLILTGVF--------KKYGKPDKLLDPA 167

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPH----GQELEPETHAVCVAGMLIRRLESDPR 269
           CG+G FL  A+N+     S       +  +    G +++     +    + I+ LE    
Sbjct: 168 CGSGTFLVRALNYWKIFYSTELDKLKMPIYEYVEGVDIDRLASMLAKINLYIQALEKIKE 227

Query: 270 RDL-SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                  I        +L +   + Y ++NPP+ K+ E      +K++K   L      +
Sbjct: 228 GYKYVPKICHDDFFKINLSSD--YAYVVANPPYTKQVEMALAFYDKQYKENLLN----YV 281

Query: 329 PKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
             I +         + +    KL       GR   ++ +S L    A  G + +++WL +
Sbjct: 282 KDIENWDERASIYAYFLVRGGKL---LRKNGRLGFIVENSWL---NAEYG-APLKKWLFK 334

Query: 384 NDLIEAIV-ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           N  +E ++ +L    F    + T + I            V+ +        +  +     
Sbjct: 335 NFSVEYVIESLVERWFEDAAVITNIIIAEMTAQSNY--DVRFVFLKKSLRELIGDPPPAN 392

Query: 443 IINDDQ--RRQILDIYVSREN 461
               +    ++I+++Y   +N
Sbjct: 393 DFMANMQYYKRIMELYYEFDN 413


>gi|282932147|ref|ZP_06337600.1| N-6 DNA methylase [Lactobacillus jensenii 208-1]
 gi|281303726|gb|EFA95875.1| N-6 DNA methylase [Lactobacillus jensenii 208-1]
          Length = 57

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 4  FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
              +  L   + +W   ++L G    +++  V+L    L+ +  + E  R  + +
Sbjct: 1  MASKSNDLKFEDKLWAACDELRGSMDASEYRNVVLGLIFLKYVSDSFEEKRQELLK 56


>gi|32476969|ref|NP_869963.1| type I restriction enzyme M protein [Rhodopirellula baltica SH 1]
 gi|32447517|emb|CAD79106.1| probable Type I restriction enzyme EcoEI M protein-Escherichia coli
           [Rhodopirellula baltica SH 1]
          Length = 351

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 47/174 (27%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++YE L+       +     F TPR ++ L + L+          +P +   + DP
Sbjct: 193 DIQGDVYEMLLNEIS--SAGKNGQFRTPRHIIKLISELV----------NPQLGHRVCDP 240

Query: 213 TCGTGGFLTDAMNHV----------------------------ADCGSHHKIPPILVPHG 244
            CGT GFL DA  ++                                 + K       +G
Sbjct: 241 ACGTAGFLLDAYQYIITQLARKKAKKNQEFEPDEDGFIRTSVSGQLDQNKKDILEQSLYG 300

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            + +     + +  +++  ++       + ++    TLSK       +   ++ 
Sbjct: 301 FDFDSTMVRLALMNLMMHGID-------NPHVDYQDTLSKSFSEEAEYDIVMAQ 347


>gi|304389844|ref|ZP_07371803.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327020|gb|EFL94259.1| restriction enzyme BgcI subunit alpha [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 283

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 38/240 (15%)

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD- 285
           +AD     K       HG EL+    AV  A M++R       +D + N++    L K+ 
Sbjct: 11  MADTDVQRKSIKKKQLHGFELQSNMFAVAAANMILR-------KDGNSNLECCDFLRKNT 63

Query: 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                K     L NPP+ +  + D +  E                          +    
Sbjct: 64  AQVQLKGATVGLMNPPYSQGTKADTEQHE--------------------------LSFIE 97

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L      G RAA+++  S +        E + +  +L+   +E ++   ++ F+   + 
Sbjct: 98  HLLDSLTVGARAAVIVPQSSM--TGKSKAEKQFKNSILDKHTLEGVITCNSETFYGVGVN 155

Query: 405 TYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
             + I +  +  ++R   + I+   D +    + G        D+R+ +LD++  R    
Sbjct: 156 PVIAIFTANEKHDKRKVCKFIDFRDDGYEVRAHVGLLEGDSAKDKRQHLLDVWFGRVEAP 215


>gi|297208852|ref|ZP_06925260.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296886510|gb|EFH25435.1| type I restriction-modification system [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 153

 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 21/72 (29%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
              A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 70  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALSGEDITYQE 129

Query: 66  NIDLESFVKVAG 77
               E + +   
Sbjct: 130 AWADEEYREDLK 141


>gi|34540358|ref|NP_904837.1| type I restriction-modification system, M subunit [Porphyromonas
           gingivalis W83]
 gi|34396670|gb|AAQ65736.1| type I restriction-modification system, M subunit, putative
           [Porphyromonas gingivalis W83]
          Length = 648

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 85/569 (14%), Positives = 158/569 (27%), Gaps = 142/569 (24%)

Query: 44  LECALEP--------TRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           L   L           +  +  +  +       ++ E         F    +   + L  
Sbjct: 104 LSDILSERWTIADLIEKDKLISERKSLKDLILEMEDEVLAGAGVDVFEEVFKLIFTKLFD 163

Query: 94  T-----NTRNNLE-----SYIASFSDNAKAIFEDF--DFSSTIARLEKAGLLYKICKN-- 139
                 N   NLE            +  + +F+     +    +   K  L         
Sbjct: 164 EMESGRNNERNLEFRNYGDTETELKERIQNLFDKARDKWEGVFSPDAKIQLTPSHLSVCV 223

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            S  ++        V+   +E+LI +           + TPR V+ +   +L        
Sbjct: 224 ASLQDVKLFNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML-------- 272

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL---------EPE 250
             +P     + D   G+ GF    + HV +     K          E             
Sbjct: 273 --NPTANEKMIDTASGSCGFPVHTIFHVWENILKEKGLERSHLFTLEQKPAECTDYVNDN 330

Query: 251 THAV---CVAGMLIRRLESDPRRDLSKNIQQGSTL------------------------- 282
             A+     A  + R L      D   N+   +TL                         
Sbjct: 331 VFAIDFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEQNLDSEDWQDTYFEGWKKL 389

Query: 283 -----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----------------- 320
                 KD +    F   ++NPPF  + ++ +   + +                      
Sbjct: 390 KKLRTRKDSYRDFTFDIVMANPPFAGEVKESRILAKYDMSRSMSLEKVKIAPKGATIVEG 449

Query: 321 LGRFGPGLPKI-------SDGSM---------------LFLMHLANKLELPPNGGGRAAI 358
              F   L          SDG+                LF+    + L+     GGR AI
Sbjct: 450 EPTFSEALANTGETIYQMSDGTYRKTKLKQAGNMSRDILFVERNLDFLKP----GGRMAI 505

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEE 417
           VL      N    S +  +R ++ +   I A+V L  ++F   T   T +  +     E 
Sbjct: 506 VLPQGRFNN----SSDKALREYIADRCRILAVVGLHGNVFKPHTGTKTSVLFVQKWDEEL 561

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
                 + +    + +++   K      D+   +I     + E G+   +LD        
Sbjct: 562 CPR---VEDYNIFFATMQEPSK------DNSGDKIYRSTTN-EEGENVPLLDTHG----H 607

Query: 478 IKVLRPLRMSFILDKTGLARLEADITWRK 506
           + V   L     L + G+A   A+   ++
Sbjct: 608 LIVKHDLFNHDGLTEDGIAEAFAEFAKKE 636


>gi|237751321|ref|ZP_04581801.1| type I restriction enzyme modification subunit [Helicobacter bilis
           ATCC 43879]
 gi|229372687|gb|EEO23078.1| type I restriction enzyme modification subunit [Helicobacter bilis
           ATCC 43879]
          Length = 561

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 108/308 (35%), Gaps = 58/308 (18%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TPR+V           D             +Y+P  G G       N          +
Sbjct: 114 YSTPREV----------NDLLALLLDLQDNDEVYNPCYGIGSIFLSLGN----------L 153

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
            P +  +G+EL+     +         L +   +     +     L + +F      ++F
Sbjct: 154 NPNIHLYGEELDERLSNIAR-------LIARFTQIKDYKLYVNDILKQPVFKAGSILRQF 206

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPN 351
           +  + NPP       ++             RF   G+   +   ++FL H    L+    
Sbjct: 207 NKVICNPPLYAHMGVEQ--------LKGDERFSKIGILAKNYPELVFLTHALAHLKQ--- 255

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
              R   ++ +  L        E ++R  L++  +IEA++ LP ++F        + ++S
Sbjct: 256 ---RGVFIVRNQTLQKSFL---EEKLRDKLVKERMIEAVIELPKNIFPHQACDFSVLVIS 309

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
           +        ++  INA +       +GK  R+       +I +++  +   +FS++ + +
Sbjct: 310 HN-----NKEILHINANNP-HFYTKDGKYNRL---RHIDEIANLFKQKRESEFSKITNIK 360

Query: 472 TFGYRRIK 479
                 ++
Sbjct: 361 DVKTHDLR 368


>gi|222481388|ref|YP_002567624.1| N-6 DNA methylase [Halorubrum lacusprofundi ATCC 49239]
 gi|222454764|gb|ACM59027.1| N-6 DNA methylase [Halorubrum lacusprofundi ATCC 49239]
          Length = 694

 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 138/411 (33%), Gaps = 66/411 (16%)

Query: 93  STNTRNNLESYIASFSDNA--KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
            ++ + +LE Y +   D    +AI+E  +  S I      G L          +L     
Sbjct: 250 PSHVQEDLEEYFSHLVDEVDFEAIYEHDNIYSEIPLDAVEGKLRAFILELDDYDL--SQF 307

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
              V+  IYE +I    ++      ++ TP  +  L T L +   D           T+ 
Sbjct: 308 NSDVIGRIYEGVI---PADRRRAMGEYYTPPAICDLITRLTVQSSDD----------TVL 354

Query: 211 DPTCGTGGFLTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           DP CG+GGFL  A + + D            +    G E+      +    + I+ L + 
Sbjct: 355 DPACGSGGFLVSAYHRLHDKLPEPAGGHEHILSHLSGVEINRFPAHLTAINLAIQDLSAY 414

Query: 268 PRRDLSKNIQQGS-----------------TLSKDLFTGKRFHY--CLSNPPFGKKWEKD 308
                 +                       T +++    +R  Y   + NPP+ ++   D
Sbjct: 415 TEWVDVEIKDFFDVKKYQKLGGREMAGAGGTETEEGLGDQRGGYDAVVGNPPYIRQENID 474

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                + H + +           S   +    +           G     + S   L   
Sbjct: 475 DKDKVRNHLSSDEIDAEDM---SSYSDI--YAYFITHGTEFLADGVDFGFITSDRWL--- 526

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
               GE +++++LL+N  I AI+     +F    + + + IL  +  +  R         
Sbjct: 527 DTQYGE-DVQQFLLDNYEIRAIIKFDRQVFDDALVDSSVVILRRQSDKSERD-------- 577

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIK 479
              +++    + ++ ++ D    I++     E  + ++++      YR + 
Sbjct: 578 ---SNVAKFLRLKQELSIDDIAAIVE-----EEAEPNKLVTNDD--YRLVT 618


>gi|193069590|ref|ZP_03050543.1| type IIS restriction enzyme M protein [Escherichia coli E110019]
 gi|192957137|gb|EDV87587.1| type IIS restriction enzyme M protein [Escherichia coli E110019]
          Length = 653

 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 111/321 (34%), Gaps = 61/321 (19%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E +   +       ++  + R  G    +  +  +TP  V  L   L     D+      
Sbjct: 301 EYYKIGLTTDFTGKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLARVNKDS------ 354

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETH 252
                ++D   G+ G L  AMN +            +              G E+    +
Sbjct: 355 ----YVWDFATGSAGLLVAAMNEMLIDARENIHSPNELQLKEAQIKAEQLLGLEVLSSIY 410

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            + +  M++         D S NI    +L+       ++ +  +   F           
Sbjct: 411 MLAILNMILMG-------DGSSNILNKDSLAD---FDGKYGFGKTGEKFPADA------- 453

Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                      F    P  + G+ M+F+    + ++      G AA+++ SS    G   
Sbjct: 454 -----------FILNPPYSAKGNGMIFVQKALSMMDK-----GYAAVIIQSSA---GTGK 494

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
           + E    + +L+ + + A + +P DLF   +++ TY+++   +     +  V+ I+ ++ 
Sbjct: 495 ATEYN--KKILKENTLLASIKMPADLFIGKSSVQTYIYVFQVKIPHNAKQAVKFIDFSND 552

Query: 431 WTSIRNEGKKRRIINDDQRRQ 451
             +  N  K R  + D  R +
Sbjct: 553 GYARSNRKKARNNLVDADRAK 573


>gi|238852889|ref|ZP_04643292.1| putative restriction-modification enzyme [Lactobacillus gasseri
           202-4]
 gi|238834481|gb|EEQ26715.1| putative restriction-modification enzyme [Lactobacillus gasseri
           202-4]
          Length = 907

 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 136/417 (32%), Gaps = 60/417 (14%)

Query: 117 DFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           DF F         ++   +L ++    +  +L         + + +E ++    +   + 
Sbjct: 15  DFQFKDVYDNQTYIDNLNILKELVDLIAPYKLKYAKKQQF-LGDFFESIL---SNGFKQE 70

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVAD 229
           A  F TP  + H   + L  P       S    R     + D  CG+G F+T+ M+ +  
Sbjct: 71  AGQFFTPVPLAHFIVSSLPLPQRTKTIISDESSRQLLPRMIDFACGSGHFITEYMDEMQK 130

Query: 230 CGSHHKIPPILVPHGQELEPETHA-VCVAGMLIRRLESD------------PRRDLSKNI 276
                 +  +     Q  +         +   +  L+ D               D    I
Sbjct: 131 IIETTDLKQLSKKQQQNFKQFKDNPFAWSNHYVYGLDIDYRLVKTSKVSSFLNGDGDAII 190

Query: 277 QQGS------------TLSKDLFT--GKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGEL 321
           ++ +             L  +      + F   ++NPP+    ++ +   +E++ + G+L
Sbjct: 191 RRANGLASFSTSDYSEALHSENHEKMNQVFDILIANPPYHVDEFKSELPNLEEDFELGKL 250

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     S+   LF+   +  L+      G   I+L S+ L        E+  R+ L
Sbjct: 251 I-----TNNSSEIEALFIERASQLLKTD----GLMGIILPSAILDTENNIYVEA--RKML 299

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           L+   I AI+  P    F       + I   R+ ++   K++          IR      
Sbjct: 300 LKRFEIVAIMKNPNKATFSATKVETVTIFGKRRNDDNVLKIE--------KQIRKALNNG 351

Query: 442 --RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLA 496
               I  + R   +  Y+    GK   + DY      + +    +  ++  +   L 
Sbjct: 352 PVNDITLNHRENCISTYIDHVFGKEFTLQDYTNLLAGKYEGEDTIVDNYKKEYKRLK 408


>gi|322372143|ref|ZP_08046684.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253]
 gi|320548152|gb|EFW89825.1| N-6 DNA methylase [Haladaptatus paucihalophilus DX253]
          Length = 920

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 100/313 (31%), Gaps = 39/313 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F +     E    L     +          V   +   +YE LI     +       F T
Sbjct: 248 FDAVPTDAETNERLRAFADSIERE--PLSEVDIDIAGWVYERLI---PDDERTRLGQFYT 302

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P ++  L +   +   D            + DP  GTG     A + + + G+     P+
Sbjct: 303 PDEIGRLLSRWAIRSPDDR----------VLDPASGTGSLTVHAYDRLDELGTRSHWDPL 352

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLS 297
                 +++  +  +    +  R          + +           D  T  RF   ++
Sbjct: 353 ERLTAVDVDGFSLRLLALNLASRGGHDPANGPFAADRFAYHRDFFDLDPDTVGRFDATVA 412

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-----------FLMHLANKL 346
           NPP+     ++  A ++EH    L  FGPG    SDG                 +     
Sbjct: 413 NPPY---VRQECLAADREHFREHLADFGPG----SDGIYADGEKEIDGRSDLYCYFLTHA 465

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                 G R A V+ +  +    A  G S  R +L ++  +EA+V     LF    + T 
Sbjct: 466 TGFLREGARLAWVVPTKWMV---ADYGPSLQR-FLYDHYTVEAVVGFRNRLFDDALVDTV 521

Query: 407 LWILSNRKTEERR 419
           L +L     E  R
Sbjct: 522 LLLLERTDDEAVR 534


>gi|194324119|ref|ZP_03057893.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
 gi|194321566|gb|EDX19050.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida FTE]
          Length = 169

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 61/174 (35%), Gaps = 12/174 (6%)

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           IR+ L+E +L++ IV LP  LF  T I   LW +   K   +   +  I+A +    I  
Sbjct: 2   IRKALVEANLVDCIVNLPAKLFLNTQIPASLWFI---KRGRKTKDILFIDARNKGHLINR 58

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT-----FGYRRIKV-LRPLRMSFIL 490
             K     +DD   +I   Y + +    S +           G+ +         ++++L
Sbjct: 59  RTK---EFSDDDITEIAQTYHNWKLSCHSELDSKSHKYEDIKGFCKSASYEEVAELNYVL 115

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
                  LE        +    S    + + M Q+          + +   + E
Sbjct: 116 TPGRYVGLEEVEDDFNFAERFTSLKTQLAEQMQQEEALNQRIMDNLAKIKIAEE 169


>gi|33151530|ref|NP_872883.1| type II DNA modification (methyltransferase [Haemophilus ducreyi
           35000HP]
 gi|33147750|gb|AAP95272.1| possible type II DNA modification enzyme (methyltransferase)
           [Haemophilus ducreyi 35000HP]
          Length = 446

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 80/240 (33%), Gaps = 32/240 (13%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           YN SE  L+ +  T    N+ +      +  K++  + +  +    L+   +L +I K  
Sbjct: 216 YN-SEQILNNIYPT--VKNILTAEDVPEEKLKSLELELNSINQDPSLKNTNILKEILKEL 272

Query: 141 SGI------ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
                    +    T    +M   YE  +R F    +      +TPR +  L T L+   
Sbjct: 273 DENIIQLFNDTFSTTSNYDIMGKFYEEFLR-FAGVSNVKKGIVLTPRHIATLFTKLIPFK 331

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-HHKIPPILVPHGQELEPETHA 253
            +              D  CGTG FL   MN +        +        G E+ P  + 
Sbjct: 332 KNDKI----------LDLCCGTGAFLIAGMNKLLSLKGIDAQNVKSNQLLGFEINPTMYI 381

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL----FTGKRFHYCLSNPPFGKKWEKDK 309
             ++ ML R        D    I    +++ D      +         NPP+  K  K+ 
Sbjct: 382 CAISNMLFRG-------DGKSKIYNMDSINDDKVNKIISESAPTIGFINPPYSGKENKED 434


>gi|218439051|ref|YP_002377380.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218171779|gb|ACK70512.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 711

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 98/282 (34%), Gaps = 56/282 (19%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             + +  S    L+ A          +  E  P+     ++          F     +  
Sbjct: 101 IPNLNLQSIQENLDNA---------INQAENIPNLYNHHIL----------FRLSTRQSG 141

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TPR +      L                 +L D  CG+GGFL +    V +     
Sbjct: 142 GRYPTPRHITKFIYNL----------AQVKPDHSLADFACGSGGFLVERELTVDNYHKT- 190

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G ++ PE   +    + +R+L    R   + +++  + L         F  
Sbjct: 191 --------WGIDISPEWIRLAYTNIALRKLPPLLRSGNALDVETFNKLKFKQKEYTIFDR 242

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            L NPPFG+K +               G+ G  +   S+ ++  L     +L       G
Sbjct: 243 ILMNPPFGEKIDTKLAV----------GKLGKTVGSRSETALTTLA--IQQLAED----G 286

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            AAI++ S  LF+      E E+R+ L++   ++A++ LP D
Sbjct: 287 IAAILVPSGLLFSNSK--AEKELRQTLIDEYHLKAVLTLPKD 326


>gi|309704635|emb|CBJ03985.1| putative type I restriction-modification subunit [Escherichia
          coli ETEC H10407]
          Length = 70

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL 48
          +   +A  IW++A  +    +  ++   IL F   + L   L
Sbjct: 2  NKQQIAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQL 43


>gi|315124538|ref|YP_004066542.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018260|gb|ADT66353.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 960

 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 117/400 (29%), Gaps = 24/400 (6%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  +       L  P   +  ++   +R + D  CG G FL    N +   
Sbjct: 6   KQDEGQFFTPIQICEFIMYSL--PLHEMLSKNSKALR-VIDYACGAGHFLNTYANELKRY 62

Query: 231 GSHHKIPPIL-VPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL----- 282
            +  ++       +G E E     V      M  +   +    D   + +  +T      
Sbjct: 63  LTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILYADALASFELANTNNLEGE 122

Query: 283 -SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            +K       F   ++NPP+    +   + +  + KN           + ++    F   
Sbjct: 123 KAKPQIESNSFDLLIANPPYSV--KGFLETLSDKSKNTYKLFNDDINIETNNSIECF--- 177

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              +     N   +AAI+L SS L      S     R  L +N    AIV L    F  T
Sbjct: 178 FCERANQILNDNAKAAIILPSSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGAT 234

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
              T +  L  ++T ++   +   + + +   I  E  K               +   + 
Sbjct: 235 GTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDSENFYQNYLSAYCDFRKFDK 294

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
             +S  L+    G    K+          +          +   K+    +       K 
Sbjct: 295 ELYSNFLN----GNLDSKLAELEAFKDYCNAFRQTSDYKRLKESKIYKESKDKQDLEDKA 350

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
            +         +        + E   +K  +       F+
Sbjct: 351 FLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFL 390


>gi|304411252|ref|ZP_07392867.1| N-6 DNA methylase [Shewanella baltica OS183]
 gi|304350445|gb|EFM14848.1| N-6 DNA methylase [Shewanella baltica OS183]
          Length = 680

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/309 (16%), Positives = 104/309 (33%), Gaps = 62/309 (20%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  +    G    +  +  +TP  +  L   L     D+           ++D   G
Sbjct: 340 GKLFNEMYGWLGFSQDKLNDVVLTPSYIATLLAKLARVNKDS----------YVWDFATG 389

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  AMN +            +              G E+    + + +  M++   
Sbjct: 390 SAGLLVAAMNEMLNDAKNTIASPEELVKKEVQIKAEQLLGLEMLSSVYMLAILNMILMG- 448

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 D S NI    +LS D     ++ +  ++ PF                      F
Sbjct: 449 ------DGSSNILNEDSLSFDG----KYGFGKTDEPFPADA------------------F 480

Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               P  + G+ M F+      +       G AAI++ +S    G   + E   R  +L+
Sbjct: 481 ILNPPYSAPGNGMNFVEKALGMMSR-----GYAAIIIQNSA---GAGKAKEINQR--ILK 530

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              + A + +P D+F   +++ TY+++    +   +   V+ I+ ++      +  K   
Sbjct: 531 KHTLSASIKMPIDIFIGKSSVQTYIYVFKVNEAHHKDDLVKFIDFSNDGYIRTSRKKSNN 590

Query: 443 IINDDQRRQ 451
            + D  R +
Sbjct: 591 NLKDIDRAK 599


>gi|167769855|ref|ZP_02441908.1| hypothetical protein ANACOL_01189 [Anaerotruncus colihominis DSM
           17241]
 gi|167668216|gb|EDS12346.1| hypothetical protein ANACOL_01189 [Anaerotruncus colihominis DSM
           17241]
          Length = 604

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/316 (17%), Positives = 91/316 (28%), Gaps = 68/316 (21%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMIRT-- 208
            ++   +E ++R       +    + T  ++V      +         +K+S        
Sbjct: 268 DIIGAFFEEILR---VGFKQDKGMYFTHSNIVRFMVEAIGLESLTQDTWKKSTHPENRLP 324

Query: 209 -LYDPTCGTGGFLTDAMNHVADCGSHHK-----------------------IPPILVPHG 244
            + DP CG+G FL  AM  +       K                              +G
Sbjct: 325 YVIDPACGSGTFLLHAMQTITRAIKSKKLDLVNDFESIQFYDARMSDAVPNYWAENFVYG 384

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------------- 289
            + +          M++   +           +  ++ S                     
Sbjct: 385 FDPQFIMAITAKVNMVLHG-DGSAHIFKYDAFKPLTSYSDPKLRPAGERIRTIASKAYPH 443

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              + F   LSNPPFG            E        F     + S+G  LF+      L
Sbjct: 444 NVCETFDVVLSNPPFGVTLSP-------EVTRDIKNTFSLSSSQPSEG--LFVERYFQLL 494

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
           +     GGR  +VL  S             +R  L     I+A+VALP ++F  T   T 
Sbjct: 495 KP----GGRLGLVLPESIFNAVDLLP----VRILLYRFFKIKALVALPRNVFIDTPTLTS 546

Query: 407 LWIL-SNRKTEERRGK 421
           L       K+E  +  
Sbjct: 547 LLFAQKKNKSELLQWD 562


>gi|150024355|ref|YP_001295181.1| type II endonuclease-methyltransferasefusion protein
           [Flavobacterium psychrophilum JIP02/86]
 gi|149770896|emb|CAL42361.1| Probable type II endonuclease-methyltransferasefusion protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1003

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 140/455 (30%), Gaps = 109/455 (23%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED----------FDFSSTIARLE-KAG 131
            S Y    +   +  +  +  + +FS     + E+          F   + +  ++    
Sbjct: 272 VSLYDRYKIYFNDLNSGAKVQLPAFSQTTSNVVEEHQIFAYNGGLFKADAILDHIKIDDA 331

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED--------------F 177
           +L+K  +N S  +   +   +  + +I+E+ +       ++   +              F
Sbjct: 332 VLFKHTENLSNYDFASEVDVNI-LGHIFENSLNELDEIKAQLEGESIDKTKTKRKKDGVF 390

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIR------------------------------ 207
            TP+ +        +       K    ++                               
Sbjct: 391 YTPKYITKYIVENTIGKLCEEKKTELQLVDEDYTTDKKRQKKTLQALIDKVETYRSWLLQ 450

Query: 208 -TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP------------------ILVPHGQELE 248
            T+ DP CG+G FL  A++ +     +                            G +L 
Sbjct: 451 LTICDPACGSGAFLNQALDFLIAQHQYIDELKAKLFGDTFVLSDVENSILENNLFGVDLN 510

Query: 249 PETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKD-----------------LFTGK 290
            E+  +    + +R  + +    DLS NIQ G++L  D                 +F   
Sbjct: 511 EESVEIAKLSLWLRTAQPNRKLNDLSSNIQCGNSLIDDVAVAGDKAFNWQTAFEKVFAKG 570

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+       + +   E       +F     KI D   LF       L+   
Sbjct: 571 GFDVIIGNPPYVL----CQPSNTNEITLDYYKKFEVASYKI-DLFHLFFEKSITLLKEK- 624

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G+   +  ++ L N        ++R ++L N  IE IV     +FF  ++     IL
Sbjct: 625 ---GKLGFITPNTYLTNKYIQ----KLRNYILNNTSIETIVNYEDSVFFDASVDVATIIL 677

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
              K       +Q+ N ++    +    KK+    
Sbjct: 678 KKEKVLNES--IQIFN-SNFGKIVELGSKKQVDWQ 709


>gi|153955553|ref|YP_001396318.1| Type I methyltransferase subunit-related protein [Clostridium
           kluyveri DSM 555]
 gi|219855947|ref|YP_002473069.1| hypothetical protein CKR_2604 [Clostridium kluyveri NBRC 12016]
 gi|146348411|gb|EDK34947.1| Type I methyltransferase subunit-related protein [Clostridium
           kluyveri DSM 555]
 gi|219569671|dbj|BAH07655.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 611

 Score = 75.0 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 122/406 (30%), Gaps = 71/406 (17%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
            Y+  F+D             T   +  A  +  + +    I    +     V+ + ++ 
Sbjct: 124 KYLIGFNDE--------KLKKTPDIVFNANKVKYVVEALQEISFTSNKYD--VLGDFFQK 173

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMIR--TLYDPTCGTG 217
           ++R   SE+ +    ++T  ++V      +   +    L     G  R   + DP+CG+G
Sbjct: 174 IVR---SELKQTKGQYLTHHNIVDFIVKAIDVENLAIDLINGKEGRPRLPYIIDPSCGSG 230

Query: 218 GFLTDAMNHVADC--------------------------GSHHKIPPILVPHGQELEPET 251
            +    M  +                                         +G E+ P+ 
Sbjct: 231 TYQIQCMKEITRSILSDMDKREKIQIADDIDDFLSVNFPKHKQNAWAKDYIYGIEIYPDL 290

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGS------------TLSKDLFTGKRFHYCLSNP 299
                  M+     S         I                +     +  ++F   +SNP
Sbjct: 291 AMATKVNMVGHGDGSANILPNDGLIDFADYPNGKLLNVKKTSNVYPKYVNEQFDIVVSNP 350

Query: 300 PFGKKWEKD-KDAVEKEHKNGELGRFGPGLPKIS--DGSMLFLMHLANKLELPPNGGGRA 356
           PF    +++      K +  GE  +           D   LF+      L       GR 
Sbjct: 351 PFSITVDRETAKQFPKLYIQGEKIQKSLKKENKKIIDTENLFIERWYQLLRPK----GRL 406

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKT 415
            +VL  S        S   EIR ++ +   ++A+V+LP   F   T   T L     +  
Sbjct: 407 GVVLPESVF----DLSSNKEIRLFIFKYFWVKAVVSLPYLAFAPYTMTKTSLLFAQKKTE 462

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
           +E        N    W +      K ++    ++++   ++ +   
Sbjct: 463 KEVEDW----NDNWDWYNKEFIKIKNQLDKLKKKKETSSLHDNFVE 504


>gi|297209069|ref|ZP_06925468.1| type I restriction-modification system [Staphylococcus aureus
          subsp. aureus ATCC 51811]
 gi|296886002|gb|EFH24936.1| type I restriction-modification system [Staphylococcus aureus
          subsp. aureus ATCC 51811]
          Length = 92

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 21/72 (29%)

Query: 6  GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
             A L   +W  A DL G+   ++F   IL     R L    E   +            
Sbjct: 9  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKAEQEYADALAGEDITYQE 68

Query: 66 NIDLESFVKVAG 77
              E + +   
Sbjct: 69 AWADEEYREDLK 80


>gi|254415121|ref|ZP_05028883.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196177927|gb|EDX72929.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 664

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 115/364 (31%), Gaps = 70/364 (19%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           NA+ I+  F     +    +      I   +     +   V   ++  +Y   + R   +
Sbjct: 68  NAQNIYAHFFTGRELFNWYQLNEQQLIMTLYQLSRFNFAGVDSDIVGTVYNTYVSR---K 124

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    + TP ++V+     +     A      G  + L DP CG+G FL  A   +  
Sbjct: 125 EKKEKGQYYTPPEIVNYILDEVGYVSGAGII---GKNKRLIDPACGSGSFLVAAAKRLVS 181

Query: 230 CGSHHK----------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS------ 273
              ++                   G +L P    +    +LI+ L+              
Sbjct: 182 AYKNNTDQIDDPVTVLERVQANLFGFDLNPFACYLAEVNLLIQVLDLVKLAYKKQQHQPI 241

Query: 274 --KNIQQGSTLSKDLFT-----------------------------GKRFHYCLSNPPFG 302
              +I     L++   T                                F + ++NPP+G
Sbjct: 242 KRFHIYNVDALARPAGTYRFALFNTLIAEESDQVDQIKSRSPNTSYANGFAFVVANPPYG 301

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
            K     DA +   +      F  G P       +F + L  +L       G    +  +
Sbjct: 302 AKLS---DAYKNTLRADYADVF-YGKPDT----YIFFLKLGTEL---LAKNGSFGFITPN 350

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR--G 420
           + L    +    + +RR LL    I  IV LP  ++   N+   L  L+    E+ R   
Sbjct: 351 TYLMGINS----AALRRELLNVGGIYQIVDLPQGIWADANVDCVLLFLNEEDDEKSRRNQ 406

Query: 421 KVQL 424
           KVQ+
Sbjct: 407 KVQI 410


>gi|86130652|ref|ZP_01049252.1| DNA adenine methylase [Dokdonia donghaensis MED134]
 gi|85819327|gb|EAQ40486.1| DNA adenine methylase [Dokdonia donghaensis MED134]
          Length = 833

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 132/398 (33%), Gaps = 82/398 (20%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
           ++E++  FG S    ++F+ +   S++N +   L     TN   N        +     +
Sbjct: 17  IQEEFKTFGISIESFDAFLYLLALSYFNKTNTHLEK---TNLLPNSNGLFGGLAKGLLKL 73

Query: 115 FEDFD-----------FSSTIARLEKA---GLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            ED D           F+  I R   A    L      +++    +     +  +   +E
Sbjct: 74  TEDKDDKYIIEETNSVFNDIIKRWPAAFLENLKLNFLSSYALKTDYNIGKENFPL--FFE 131

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L++R+       A   + P ++      +     + +           Y+P  G   F 
Sbjct: 132 ILLKRYLETQGRNAGLTILPEEISKFICDITATSSEQVI----------YNPFAGLASFG 181

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             +                 V  G+EL+    A+    + +R+ +          +  G 
Sbjct: 182 MYSNE-------------NSVYVGEELDERIAALANCRLWLRKNKMHKA------VYSGD 222

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           +    L   K+    +++PPFG +    +D +                            
Sbjct: 223 SFDSKLEFNKKVDLFVASPPFGLRISNFEDKL---------------------------- 254

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            +A+ L+     G    ++ +    F         E+R+ L+++DL++ +++ P  L   
Sbjct: 255 -IAHSLKSTSGKGKILLLIPN---TFLISERKDHKELRKKLIDDDLVDMVISFPGGLLPN 310

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           + IA  + IL+  K  +    V  + A     S R + 
Sbjct: 311 SGIAFSILILNKSK--KVPKDVTFVKADAFVKSNRRQK 346


>gi|332974668|gb|EGK11585.1| type II restriction modification enzyme methyltransferase [Kingella
           kingae ATCC 23330]
          Length = 244

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 83/233 (35%), Gaps = 47/233 (20%)

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGK 303
           EL  E + +    M++R        D S  I++GS  ++    F+  +    L NPPF  
Sbjct: 2   ELNAEMYTLAATNMILRG-------DGSSRIEKGSAFNRPESLFSEFQADRLLLNPPFSY 54

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +                               M F+ +  +K++    G    AI++  S
Sbjct: 55  EENG----------------------------MPFIKYGLSKMQKDGLG----AIIIQDS 82

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKV 422
                   S      + +L++  + A + +PTDLF     + T ++I       +    V
Sbjct: 83  AGSGKAVMSN-----QEILKSHTLLASIKMPTDLFQPMAGVQTSIYIFKAGTPHDVEQPV 137

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGY 475
           + I+ ++        G +     + +   I+ IY + +N K S  L      Y
Sbjct: 138 KFIDFSNDGYKRTERGLRELDNPEQRYADIVKIYKAGKNAKVSAELWNLDNVY 190


>gi|282164224|ref|YP_003356609.1| hypothetical protein MCP_1554 [Methanocella paludicola SANAE]
 gi|282156538|dbj|BAI61626.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 589

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 36/265 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             A    TP  V        +DP  A       +   ++D +CGTG FL  A+  +    
Sbjct: 38  RDAGVVYTPLPVARYICRQAIDPYLATGNSIENI--RVFDSSCGTGIFLQAALEELYRLR 95

Query: 232 SHHKIPPILVP---------HGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +                    G +++  +   A     ML+    S+  + +  N+   +
Sbjct: 96  AEKSDLSEYELKKQIIEKCLFGMDIDQYSADAAFLRLNMLL---PSNGEKQIKVNVACDN 152

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM---- 336
            L         F   + NPP+ +      D      +  +  R    L    +G++    
Sbjct: 153 ALFATG--VGTFDVIVGNPPYMRIKSMSGDLKTSLPEKVKASR----LYNYQEGNLNLYK 206

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-- 394
           LF+      L+      GR  +++ SS L    +     ++R+ + +   +E +V +P  
Sbjct: 207 LFIERNLGFLKES----GRMGLIIPSSFLNEATSE----KLRKHIFDTCSLEEVVEIPER 258

Query: 395 TDLFFRTNIATYLWILSNRKTEERR 419
           + +F   N AT + +L   K    R
Sbjct: 259 SRIFPGVNQATAIIVLKKSKASHGR 283


>gi|85861003|ref|YP_463205.1| putative cytoplasmic protein [Syntrophus aciditrophicus SB]
 gi|85724094|gb|ABC79037.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB]
          Length = 51

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE 49
          MT    + + L +F++K A+ L G    ++F + I     L+RL    +
Sbjct: 1  MTTEKITLSQLESFLFKAADILRGKMDASEFKEFIFGMLFLKRLSDEFD 49


>gi|198283262|ref|YP_002219583.1| type I restriction-modification system methylation subunit
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667778|ref|YP_002425844.1| hypothetical protein AFE_1415 [Acidithiobacillus ferrooxidans
          ATCC 23270]
 gi|198247783|gb|ACH83376.1| type I restriction-modification system methylation subunit
          [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519991|gb|ACK80577.1| conserved domain protein [Acidithiobacillus ferrooxidans ATCC
          23270]
          Length = 88

 Score = 75.0 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
          +   L   I+K A  L G    ++F + I     L+R     E  R+ V +  +  G + 
Sbjct: 4  TLPQLERHIFKAAGILRGKIDASEFKEYIFGMLFLKRCSDVFEQRRAEVIQLEIDAGKTP 63

Query: 67 IDLES 71
           + E+
Sbjct: 64 AEAEA 68


>gi|297521619|ref|ZP_06940005.1| DNA methylase M [Escherichia coli OP50]
          Length = 197

 Score = 74.6 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 20/124 (16%)

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-- 412
           RAA+V+  + LF G  G   ++IRR L++   +  I+ LPT +F+   + T +   +   
Sbjct: 1   RAAVVVPDNVLFEGGKG---TDIRRDLMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGT 57

Query: 413 ----RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS-------REN 461
                + +     V + +     T++ + G KR    D+  +    +Y         R  
Sbjct: 58  VANPHQDKNCTDDVWVYDLR---TNMPSFG-KRTPFTDEHLQPFERVYGEDPHGLSPRSE 113

Query: 462 GKFS 465
           G++S
Sbjct: 114 GEWS 117


>gi|218247760|ref|YP_002373131.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
 gi|218168238|gb|ACK66975.1| N-6 DNA methylase [Cyanothece sp. PCC 8801]
          Length = 692

 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 94/290 (32%), Gaps = 44/290 (15%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           S   ++I +       I+ L +    +  +        L         + N++ H I  F
Sbjct: 74  SAELQSIIDTVTNLVPISTLPRHPKDIRNLNLELIQENLKNAINEVENIPNLFNHYIL-F 132

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                +    + TPR +      L                 +L D  CG+GGFL +    
Sbjct: 133 RLSTRQSGGRYPTPRHITQFIFNLAQIE----------PHHSLADFACGSGGFLVERELT 182

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           + +              G ++ PE   +    + +++         + N+        D 
Sbjct: 183 IDNYSKT---------WGIDISPEWIRLAYTNIALKKFPPQLGSGNAINVAN-----SDD 228

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           +  +     L NPPFG   + D     +        R    L                KL
Sbjct: 229 WKDRVCDRILMNPPFG--EKIDSKLATENLGKNVGSRSETALT----------TLAIQKL 276

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
                  G A I++ S  LF+      E E+R+ L+++  ++A++ LP D
Sbjct: 277 AED----GIAGILVPSGLLFSNSK--AERELRQTLIDDYHLKAVITLPKD 320


>gi|325919125|ref|ZP_08181184.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
 gi|325550434|gb|EGD21229.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
          Length = 273

 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 78/238 (32%), Gaps = 56/238 (23%)

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFT 288
                       G E +P   A+  + M++R        D   N+ QGS           
Sbjct: 9   QERNRIKSKGLIGIEQQPNMFALAASNMILRG-------DGKANLYQGSCFDDAIAKAVK 61

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +    L NPPF +                                + F+  +   LE 
Sbjct: 62  KHKADVGLLNPPFAQGTADLH-------------------------ELRFIQQMLYALE- 95

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
              GG   AIV     +         + +R+ L+    +EA++++PT+LF+       + 
Sbjct: 96  --EGGTGVAIVPMGCAI-------APNLLRQELMAEHTLEAVMSMPTELFYPVGAVCCIM 146

Query: 409 ILSNRKT-EERRGKVQL-INATDLWTSIRNEGKKRRIINDDQ-----RRQILDIYVSR 459
           + +  K   + +          D +   +++G+    I+ +      R   +D+Y +R
Sbjct: 147 VWTAHKPHAQSKRDTWFGYWKQDGFIKTKHKGR----IDPEGEWHLLRDHWIDMYRNR 200


>gi|169350786|ref|ZP_02867724.1| hypothetical protein CLOSPI_01559 [Clostridium spiroforme DSM 1552]
 gi|169292649|gb|EDS74782.1| hypothetical protein CLOSPI_01559 [Clostridium spiroforme DSM 1552]
          Length = 167

 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 24/152 (15%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL--------EPTR 52
           M E   ++  L + +W  A+ L       ++   +L     + L  +            +
Sbjct: 13  MAE-AENSKDLISVLWSGADILRSKMDANEYKDYLLGIVFYKYLSDSFLIKVYDLINDEK 71

Query: 53  ----SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL--ESYIAS 106
                   E+Y          E   ++     Y        T  +   RNN     Y+  
Sbjct: 72  PSSLKEALEEYREALKDESADELMEEIKSACHYVIEPDLTYTYFADAARNNSFNREYLQK 131

Query: 107 FSDNAK-------AIFEDFDFSSTIARLEKAG 131
             +N +        +F D D  S   RL    
Sbjct: 132 AFNNIEQSNPLFADLFTDIDLYS--NRLGTGD 161


>gi|297587713|ref|ZP_06946357.1| type I restriction-modification system [Finegoldia magna ATCC
           53516]
 gi|297574402|gb|EFH93122.1| type I restriction-modification system [Finegoldia magna ATCC
           53516]
          Length = 154

 Score = 74.2 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
           D+ K +FE  D  +T  +L     EK   L  I      I     +        + YE+L
Sbjct: 23  DDIKGLFE--DIDTTSNKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYL 80

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           I  + S   +   +F TP+ V  L   L++D   ++ K        +YDPTCG
Sbjct: 81  ISNYASNAGKSGGEFFTPQTVSKLLAKLVMDGKTSINK--------VYDPTCG 125


>gi|254416835|ref|ZP_05030584.1| hypothetical protein MC7420_1610 [Microcoleus chthonoplastes PCC
          7420]
 gi|196176381|gb|EDX71396.1| hypothetical protein MC7420_1610 [Microcoleus chthonoplastes PCC
          7420]
          Length = 78

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 4  FTGSAASL--ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           T + A L     +W  A+ L G     ++  V+L    L+ +  A +     + ++
Sbjct: 17 KTSNGAKLCFEQTLWTAADKLRGLMDAVEYKHVVLGLIFLKYISDAFQERYQKLDKE 73


>gi|310831004|ref|YP_003969647.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis
           virus BV-PW1]
 gi|309386188|gb|ADO67048.1| putative DNA N6-adenine methyltransferase [Cafeteria roenbergensis
           virus BV-PW1]
          Length = 913

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 113/350 (32%), Gaps = 30/350 (8%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           YN    S + L   +        + +   N     +D DF +     +K  +L  + K+ 
Sbjct: 184 YNILCKSKNNLDGKSILEKTGELLLNH-RNTSKFIKDSDFINC----KKNSILKDLIKDI 238

Query: 141 SGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                         ++   YE  +  +     +   +F T R ++ +   ++   D    
Sbjct: 239 QTFCEKYHIFEYSDIVGIAYEFWMNEYRGGGGKELGNFFTERRLMRMCFEMIDKKDIKRL 298

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           K +     T+ D  CGT GF     + + D             +G E E     + +   
Sbjct: 299 KINNDS--TIGDEFCGTFGFPLYLKSFLKDKFKIDIKNEN--IYGVEFEDRASRMAILNA 354

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE-KDKDAVEKEHK- 317
           +          D  +N+ +G +   ++         + N PFG + + K+     +E+K 
Sbjct: 355 M-------FSLDNVENVVRGDSFITNISP--HLDISVHNVPFGGRMKYKNIKRHYEEYKI 405

Query: 318 -NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            + ++  F   +   ++        +   L      G    I+                 
Sbjct: 406 NHPDIPGFDEIIKSKANQDATLASQMV--LYKTNKMG--ICIIKDGQE--ATGTTKELVA 459

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLIN 426
            R++L ++  I+ I+ +P+  F  T   T        K   +   +Q + 
Sbjct: 460 YRKFLCDSVNIKKILKIPSGAFSSTGTKT--LCFYFVKDGNKTENIQFLE 507


>gi|77164667|ref|YP_343192.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|254434661|ref|ZP_05048169.1| hypothetical protein NOC27_1592 [Nitrosococcus oceani AFC27]
 gi|76882981|gb|ABA57662.1| type I restriction-modification system, M subunit [Nitrosococcus
           oceani ATCC 19707]
 gi|207090994|gb|EDZ68265.1| hypothetical protein NOC27_1592 [Nitrosococcus oceani AFC27]
          Length = 129

 Score = 73.9 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 7/117 (5%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
           M++       + N  W   +   G      +   IL    ++ +              Y 
Sbjct: 1   MSKIQQK--DINNAAWAACDTFRGVVDPAQYKDYILVMLFVKYISDVWRDHYQEYHRHYG 58

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFED 117
                + D     K+A   F   S        +  T       + SF  +  +++E 
Sbjct: 59  -----DDDARIRRKLARERFVLPSVEITENRQNEKTGKEATIVVDSFMADFYSLYER 110


>gi|196234435|ref|ZP_03133261.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
 gi|196221491|gb|EDY16035.1| N-6 DNA methylase [Chthoniobacter flavus Ellin428]
          Length = 730

 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 89/269 (33%), Gaps = 39/269 (14%)

Query: 154 VMSNIYEH-LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++ +YE+ LI R   EV +      TP  +V      L    + +    P   R +Y+P
Sbjct: 264 ALAYVYENTLISR---EVRKELGTHSTPAYLVDYIVGRLSPWIEEI----PSDQRYVYEP 316

Query: 213 TCGTGGFLTDAMNHV-------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            CG  GFL  A+  +            H +        G +++     +    + +  + 
Sbjct: 317 ACGHAGFLVAAVRLLTSLLPTEQATPPHRRAYLRERIQGSDVDSFALEIARLSLTLTDIP 376

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +         ++Q    + DL           L+NPPF K          +  +     R
Sbjct: 377 NPNGW----KLKQDDAFASDLLESAASGSRILLANPPFEK---------IEPARRDAYTR 423

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                  +S  +      + ++       GG   +V+  + L +  A       RR L +
Sbjct: 424 QFRAPQFVSQAA-----EILHRAISALPSGGVFGVVVPQNLLHSSDAT----AFRRMLTD 474

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSN 412
               E I   P  +F   ++ + + I   
Sbjct: 475 KAEFEEICLFPDKMFNFADVESGILIGRK 503


>gi|270692011|ref|ZP_06222905.1| type I restriction-modification system DNA methylase [Haemophilus
           influenzae HK1212]
 gi|270316087|gb|EFA28100.1| type I restriction-modification system DNA methylase [Haemophilus
           influenzae HK1212]
          Length = 193

 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 43/168 (25%), Gaps = 48/168 (28%)

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW-------------------- 504
           S++ D + FGY ++ + RP R S       +A L  D                       
Sbjct: 25  SQIFDNQDFGYYKVTIERPDRRSAQFTVENIASLRFDKALFEPMQYLYRQYGGQVYNAGF 84

Query: 505 ----------------------RKLSPLHQSFWLDILK------PMMQQIYPYGWAESFV 536
                                  K   L    W            +++      + +   
Sbjct: 85  LTQTEQEITAWCEAQGIALNNKNKAKLLDVKTWEKAAALFQTASKLLEHFGEQQFDDFNQ 144

Query: 537 KESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
            +       KT K+  S +   A  NA    D  +  V     +  P+
Sbjct: 145 FKQAVECRLKTEKIPLSATEKKAIFNAVSWYDENSAKVIAKTLKLKPN 192


>gi|315284447|ref|ZP_07872160.1| type I restriction-modification system, M subunit [Listeria marthii
           FSL S4-120]
 gi|313611908|gb|EFR86338.1| type I restriction-modification system, M subunit [Listeria marthii
           FSL S4-120]
          Length = 179

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 50/176 (28%), Gaps = 30/176 (17%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLEC-ALEPTR-----------SA 54
           ++  +   +W  A +L G    + +   +L     + L    LE  +             
Sbjct: 3   TSEEIKRRLWDGANELRGSMDASRYKDYMLGLMFYKFLSDKTLEKYKSMADKGQLSEAEL 62

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN-----------NLESY 103
           V E          +L+  ++     F        + L                  N E  
Sbjct: 63  VEEYAKDRAYHGENLDKMIQSVLGYFVLPEHLYQTWLKDIAIGEFEVQKVIDSLNNFERT 122

Query: 104 I--ASFSDNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHPDTVPD 152
           I  +  SD+ + +F       T   L     E++  +  + + F  + +      D
Sbjct: 123 IAVSGDSDDFQGLFSSSTIDLTDTALGSNLNERSKNIKALIELFQDLNMVALQKSD 178


>gi|251772061|gb|EES52631.1| N-6 DNA methylase [Leptospirillum ferrodiazotrophum]
          Length = 784

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 108/349 (30%), Gaps = 108/349 (30%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            +E+LI +           + TPR ++ +   +L          +P    TL DP  G+ 
Sbjct: 314 AFEYLINK---SSKGEKGQYFTPRYIIDMCVKML----------NPQKHETLIDPAAGSC 360

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV---CVAGMLIRRLE 265
           GF   A+ HV +     +          E +P         +  A+     A  + R L 
Sbjct: 361 GFPVHAIFHVWESILQEECLDKSHLFTIEKKPVQCEDYVHEKVFAIDFDEKAVRVGRTLN 420

Query: 266 SDPRRDLSKNIQQGSTL------------------------------SKDLFTGKRFHYC 295
                D   N+   +TL                              +K+     +F   
Sbjct: 421 L-IAGDGQTNVLHLNTLDYERWNEKTVEEAWLDVYGEGWKRLRKLRAAKNENRDFQFDIV 479

Query: 296 LSNPPFGKKWEKDK----------------DAVEKEHKN-----GELGRFGPGLPKI--- 331
           ++NPPF    ++ +                  V+   KN          F   L      
Sbjct: 480 MANPPFAGDIKETRILAKYDLASTVSLDKVKNVDPTDKNIVDAPDRTPTFPEALNASPTV 539

Query: 332 ----SDGSM---------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
               +DG+                LF+      ++     GGR AIVL      N    +
Sbjct: 540 IYKMADGTYRKIKVKHQHKVGRDILFIERNLQFIKP----GGRMAIVLPQGRFNN----A 591

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420
           G+  +R ++ E+  I A+V L  ++F   T   T +  +     +  +G
Sbjct: 592 GDKPLREYIAEHCRILAVVGLHGNVFKPHTGTKTSVLFVQRWNDDPTKG 640


>gi|325289835|ref|YP_004266016.1| RNA methylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965236|gb|ADY56015.1| RNA methylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 701

 Score = 73.1 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 111/357 (31%), Gaps = 50/357 (14%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +F +F       +   A  L ++ K        P+     ++  +Y  +  R     + 
Sbjct: 157 GLFSEFLEDDLKIQEADAECLLRVKKL-----GIPNERGKDLLGLVYMTISHRAARISN- 210

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               + TP  +V                        + DP CG+G FL      +     
Sbjct: 211 --GTYYTPGSIVEKLV-------PKGLHLVEREFPRILDPCCGSGNFLLTVFLALKSNLV 261

Query: 233 HHKIPPILV--------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283
              +PP             G +++     +C   +L+  L        + +IQ  + L  
Sbjct: 262 QKGLPPGEAEKLLLEECIFGFDIDSTAVWLCRVNLLL--LCDTDFVPGNWHIQCDNALMG 319

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHL 342
                  +F   + NPP+G  +  ++             R      + S  S  +F+ + 
Sbjct: 320 HSKKISGKFDLIIGNPPWGSDFSGNELTEY---------RKRYATARASFDSFSIFIEYA 370

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L    N  G  A +L  S L           +R+ LL+   IE+I  L  + F R  
Sbjct: 371 LKTL----NERGIVAYILPESIL----KVRTHLPVRKILLDETHIESIEKL-GNQFSRVF 421

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-----RIINDDQRRQILD 454
                 +    +  +   ++Q+ N  +     +            I + ++  +IL 
Sbjct: 422 APAISLLARKTEIHDSGHQIQIENIDEKRIISQKRFADHHLLFFNIWSSEREHRILK 478


>gi|282851931|ref|ZP_06261291.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
 gi|282556940|gb|EFB62542.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
          Length = 693

 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/393 (16%), Positives = 123/393 (31%), Gaps = 82/393 (20%)

Query: 73  VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAG 131
           ++  G +       + +     N    +   I SF +  KA  E     +S ++ +    
Sbjct: 265 LQTEGVTQLKPENLTSNDDEDDNDGQIIIRKIKSFLNKRKASQEKMKMITSLLSPIFTKR 324

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF------------GSEVSEGAEDFMT 179
           LL+K     S I+     V   ++  +   L   F              E  +  +  +T
Sbjct: 325 LLWKNINGQSLIKSLYTDVYKDILPLLESDLQLDFTGKILNSLNDWVSIENDKQNDVVLT 384

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------A 228
           PR +  L   L     D+           ++D   G+GGFL  AM+ +            
Sbjct: 385 PRYITQLMVKLTHTDKDS----------YVWDTAMGSGGFLVSAMDIMIKDAKDKIQDSE 434

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                          G EL    + + V  M++         D S N++   + +     
Sbjct: 435 KLKEKINQIKKHQLLGIELLGNIYILAVLNMILMG-------DGSSNMRNDDSHNVYKRL 487

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
               +  L NPP+  + +                               F+    +++  
Sbjct: 488 KFPANVFLLNPPYSAEGKG----------------------------FNFVKEAFSQMHS 519

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406
                         + L    AGSG      + +LEN+ + A + +P DLF    ++ T 
Sbjct: 520 GY-----------GAVLIQENAGSGNGLPYTKEILENNTLVASIHMPNDLFNGKASVQTA 568

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +++         +  V  I+ +D   + +N  K
Sbjct: 569 IYVFKVNDPHNEKKAVTFIDFSDDGYTRQNRKK 601


>gi|322383486|ref|ZP_08057262.1| type I restriction-modification system DNA methylase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321152225|gb|EFX45055.1| type I restriction-modification system DNA methylase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 388

 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 75/244 (30%), Gaps = 51/244 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 F TP  V      ++         E       + +P+ G+G FL     H+   
Sbjct: 33  GFNGGAFFTPTHVARFMVGVI-----RNLYEGFPENMRVLEPSVGSGVFL----EHL--- 80

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                 PP       E++  +  V                    ++  G+ L  D     
Sbjct: 81  ------PPDAEITALEIDETSARVTQ------------LIYPHADVILGNALDHDR--RD 120

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + NPP+G+  E +K+ +    K G                  F+           
Sbjct: 121 YYDLVIGNPPYGETVETEKEYLTLSKKKGIY---------RGKSEAAFIELAIRAARP-- 169

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLW 408
             GG  A +L +   F G A     ++R+ + E     A + LP + F  T   I T + 
Sbjct: 170 --GGYIAFILPTGISFAGHA----KKVRKLMYETCWQVATIMLPGETFMHTGTTIPTQII 223

Query: 409 ILSN 412
           IL  
Sbjct: 224 ILRK 227


>gi|291545710|emb|CBL18818.1| Type I restriction-modification system methyltransferase subunit
           [Ruminococcus sp. SR1/5]
          Length = 198

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 13/115 (11%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMT 179
              I +L    LL K+  +   I    + +    +  ++YE+L+ +           F T
Sbjct: 85  DDAIFKLPTPLLLSKVVDSLDEIYKLMNEIQTADVRGDVYEYLLSKIAQSG--RNGQFRT 142

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
           PR ++ +   ++           P     + DP+CGT GFL  A  ++ +     
Sbjct: 143 PRHIIRMMVEMM----------DPSSDEIICDPSCGTSGFLVAAGEYLKEKRKEE 187


>gi|294783025|ref|ZP_06748349.1| type IIS restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
 gi|294479903|gb|EFG27680.1| type IIS restriction enzyme M protein [Fusobacterium sp. 1_1_41FAA]
          Length = 682

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 153/472 (32%), Gaps = 97/472 (20%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
            TL +T   +N+   +   S   K IF           ++  G+ YKI            
Sbjct: 295 RTLKNTLLSDNINKPVNGESQ-LKRIFSKI--------VDDLGIYYKI------------ 333

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +       ++  +    G    +  +  +TP  V +    L     D+           
Sbjct: 334 GLTTDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVANFLVKLARVNKDS----------Y 383

Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           ++D   G+ G L  AMN +            +              G E+    + + + 
Sbjct: 384 VWDFATGSAGLLVAAMNEMLIDAKDKIKSPQELEQKTLKIKAEQLLGLEVLSNIYMLAIL 443

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++         D S NI    +L               N  FG           +E+K
Sbjct: 444 NMILMG-------DGSSNILNKDSLRD----------FNGNYAFG-----------EENK 475

Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 F    P  ++G+ M+F+    + +E      G AAI++  S    G   + E  
Sbjct: 476 KFPATAFVLNPPYSAEGNGMIFVEKALSLMEK-----GYAAIIIQHSA---GSGKAKEYN 527

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
             + +LE + + A + +P DLF   +++ TY+++    +  ++   V+ I+ ++   +  
Sbjct: 528 --KKILEKNTLLASIKMPLDLFIGKSSVQTYIYVFRIGEVHQKDEIVKFIDFSNDGYTRS 585

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
           +  K    + D            R   ++  M+D   FG  ++ +             G 
Sbjct: 586 DRKKASNNLKD----------TDRAKERYQEMVDLVRFGKSKLNIFTEKEY-----YEGY 630

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
              E    W + +P+     ++  K  +     +  +        ++   K 
Sbjct: 631 IDPENGSDWNQSTPVDTKPTIEDFKKTVADYLAWEVSNLLKNTERENESLKK 682


>gi|331000342|ref|ZP_08324023.1| hypothetical protein HMPREF9439_01665 [Parasutterella
           excrementihominis YIT 11859]
 gi|329572138|gb|EGG53803.1| hypothetical protein HMPREF9439_01665 [Parasutterella
           excrementihominis YIT 11859]
          Length = 156

 Score = 72.7 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 6/124 (4%)

Query: 7   SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN 66
           +   LA  IWK A ++ G  +  ++   IL     + L            +  L     +
Sbjct: 2   NKQELAAQIWKGANEMRGKIEAGNYKDFILGLLFYKFLS----ENEVKYLKDNLGASKED 57

Query: 67  IDLESF--VKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
           +  E      +    +Y   E   S++   +   N+ S  A+ S+      E+  FS+  
Sbjct: 58  LAAEDVKTYLIDNLGYYIPEENLFSSMMGKDKGMNIGSLSAALSNFNLVTLENPLFSNIF 117

Query: 125 ARLE 128
             L 
Sbjct: 118 RSLN 121


>gi|254235709|ref|ZP_04929032.1| hypothetical protein PACG_01646 [Pseudomonas aeruginosa C3719]
 gi|126167640|gb|EAZ53151.1| hypothetical protein PACG_01646 [Pseudomonas aeruginosa C3719]
          Length = 603

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 33/263 (12%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
               +    F TP  +       L +              +  DP CG   FL      +
Sbjct: 114 EGYRKKLAMFFTPVSLTEGLLDDLAEQGTDFGS------FSFMDPACGGAAFLAPIALRM 167

Query: 228 ADCGSHHK-------IPPILVPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQ 278
               +                 +G +L+     +      M +           + NI  
Sbjct: 168 RKALATKGLPPIKLLKHVEKHLYGTDLDKSLCELSKHFLCMALHAEIQKTSYIPTFNIHH 227

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
            ++L++   +  R    + NPP+ K   ++ + +   + +         +    +   LF
Sbjct: 228 ANSLTELSASLGRVDVVVCNPPYRKMTAEELEPLRATYTDV--------IEAQPNLYCLF 279

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE--AIVALPTD 396
           +      L      GGRAA+V  +S L    +G   S +R++L+ +  +E   +V+    
Sbjct: 280 ITLCVRLLR----NGGRAALVTPTSFL----SGQYFSRLRKFLMRHTDVEHIGMVSDRKG 331

Query: 397 LFFRTNIATYLWILSNRKTEERR 419
           +F      T + IL  R  E+R 
Sbjct: 332 VFIDVEQETAMTILRRRAEEDRT 354


>gi|224024623|ref|ZP_03642989.1| hypothetical protein BACCOPRO_01350 [Bacteroides coprophilus DSM
           18228]
 gi|224017845|gb|EEF75857.1| hypothetical protein BACCOPRO_01350 [Bacteroides coprophilus DSM
           18228]
          Length = 682

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 65/390 (16%), Positives = 128/390 (32%), Gaps = 62/390 (15%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  +    G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 341 GKLFNEMYGWLGFSQDKLNDVVLTPAYVAKLLVKLARVNKDS----------YVWDFATG 390

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  AMN +            +              G EL P  + + +  M++   
Sbjct: 391 SAGLLVAAMNEMLIDAKNNIKSPEELAKKELEIKSKQLLGIELLPSVYMLAILNMILMG- 449

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 D S NI    +L    F G           +G   ++DK   +          F
Sbjct: 450 ------DGSSNILNEDSLKD--FDGN----------YGYSDKQDKFPADA---------F 482

Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               P  ++G+ M F+      +       G AAI++  S    G   + E   R  +L+
Sbjct: 483 VLNPPYSANGNGMNFVEKALGMMNR-----GYAAIIIQGSA---GTGKATEYNKR--ILK 532

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
            + + A + +P DLF   +N+ TY+++    +  ++   V+ I+ ++   +  N  K   
Sbjct: 533 RNTLLASIKMPIDLFIGKSNVQTYIYVFRVNEAHKKDEIVKFIDFSNDGYTRTNRKKASC 592

Query: 443 IIND-DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            + D D  ++  +  V+      S++       Y    +       +        +    
Sbjct: 593 NLRDTDHAKERYEEVVNLVRFGKSKLHYLTDKEYYEDTIDPESGKDWNQTAPIDTKPTLQ 652

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
              + +S        ++LK    Q    G 
Sbjct: 653 DFKKTVSDYLAWEVSNLLKRKNSQEDSLGK 682


>gi|291276677|ref|YP_003516449.1| putative type I restriction-modification system M protein
           [Helicobacter mustelae 12198]
 gi|290963871|emb|CBG39707.1| putative type I restriction-modification system M protein
           [Helicobacter mustelae 12198]
          Length = 561

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 105/299 (35%), Gaps = 58/299 (19%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP  V  L   LL   +D             Y+P  G G      +           +
Sbjct: 109 YSTPLQVNRLLIGLLQIEEDDKI----------YNPCYGMGSIFLSLVQ----------M 148

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRF 292
              +  +G+EL+P    +    ++++  E          +     L    F      + F
Sbjct: 149 QKNIELYGEELDPRLSQIAF--LILQICEIPTHG-----LYVNDLLKSPRFVDGDQFQIF 201

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-GLPKISDGSMLFLMHLANKLELPPN 351
              L NPP       D           +  RF P G        ++FL+H  + L+    
Sbjct: 202 DKVLCNPPLYAHLGIDF--------LKKDQRFHPIGAIAKHYPELIFLIHSLSHLKKCG- 252

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
                  ++ +  L   +  + E+++R  L +  +I +I+ LP ++F   N    + ++ 
Sbjct: 253 -----VFIVRNQVL---QKNASEAKVRSRLCKQRMIRSIIELPKNIFPHQNNDFSIVVIM 304

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
                    ++  INA+D +   R    K   +       IL+I+  ++ GK+S++   
Sbjct: 305 PN-----SEEILHINASDEFFYEREG--KYNRLK--NIEVILEIFFQQKEGKYSKITKT 354


>gi|189462166|ref|ZP_03010951.1| hypothetical protein BACCOP_02848 [Bacteroides coprocola DSM 17136]
 gi|189431139|gb|EDV00124.1| hypothetical protein BACCOP_02848 [Bacteroides coprocola DSM 17136]
          Length = 712

 Score = 72.3 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 64/466 (13%), Positives = 125/466 (26%), Gaps = 120/466 (25%)

Query: 44  LECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGST------- 94
           +   +   +  +  +  +       ++ E         F    +   + L          
Sbjct: 178 ISDLI--KKDKLVNERKSLKDLILEMEDEVLAGAGVDVFEEVFKLIFTKLYDEMESGRKP 235

Query: 95  --NTR-NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHP 147
             N    N         +  + +F+           E A +L    +      S  ++  
Sbjct: 236 DRNLEFRNYGDTETELKEKLQTLFDQAKEKWQGVFTEDAKILLTPSHLSVCVASLQDVKL 295

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 V+   +E+LI +           + TPR V+ +   +L          +P    
Sbjct: 296 FNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------NPKADE 342

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAV---- 254
            + D   G+ GF    + HV       K          E +P            A+    
Sbjct: 343 KMIDTAAGSCGFPVHTIFHVWQKILEAKGLKRSHLFTLEEKPAECSDYVQNNVFAIDFDE 402

Query: 255 ---------------CVAG-MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------- 291
                               M +  L+ +   +  K+     T S+     K+       
Sbjct: 403 KAVRVARTLNLIAGDGQTNVMHLNTLDYERWDETVKDENWSDTYSEGWKKLKKMRAEKNS 462

Query: 292 -----FHYCLSNPPFGKKWEKDKDAVEKEHKN-----------------GELGRFGPGLP 329
                F   ++NPPF    ++ +   + +                         F   L 
Sbjct: 463 NRDFTFDIVMANPPFAGDVKESRILAKYDLSRSVSLEKLKNVPSGATITQGEPTFPEALA 522

Query: 330 KIS-------DG---------------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                     DG                +LF+    + L+     GGR AIVL      N
Sbjct: 523 NSGETVYQMADGTFRKTKLKQASNMSRDVLFVERNIDFLKS----GGRMAIVLPQGRFNN 578

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
               S +  +R ++ +   I A++ L  ++F   T   T +  +  
Sbjct: 579 ----SSDKVLREYIADRCRILAVIGLHGNVFKPHTGTKTSVLFVQK 620


>gi|293189377|ref|ZP_06608100.1| putative modification enzyme transmembrane protein [Actinomyces
           odontolyticus F0309]
 gi|292821840|gb|EFF80776.1| putative modification enzyme transmembrane protein [Actinomyces
           odontolyticus F0309]
          Length = 151

 Score = 72.3 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 20/158 (12%)

Query: 30  DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
            +   +L    L   E   E  R+AV     +   +N+        A    Y   E  LS
Sbjct: 2   QYRDPVLGLVFLAYAEDRFESVRAAVDAGATSRNPANVAD----YRAKSVLYVPDESRLS 57

Query: 90  TLGS----TNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
            L +     +     ++ I +  +     K +           +LE++  L ++ + F+ 
Sbjct: 58  YLVNLPEGKDVGKATDAAIKAIEETNLELKDVLPR-----GSQKLERS-TLIELLRLFA- 110

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               P  +       IYE  +  F ++  +G   + TP
Sbjct: 111 --PLPKQLEGDAFGFIYEDFLSNFAAQEGKGGGKYFTP 146


>gi|156308544|ref|XP_001617681.1| hypothetical protein NEMVEDRAFT_v1g225887 [Nematostella vectensis]
 gi|156195235|gb|EDO25581.1| predicted protein [Nematostella vectensis]
          Length = 336

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 98/321 (30%), Gaps = 92/321 (28%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVA-----------------------DCGSHHKIPP 238
           +P     + D  CG+GGFL   + HV                        +     +   
Sbjct: 6   NPNEKTRVLDXACGSGGFLVMVLEHVRKQIAKELYPDLEDVLLAEKFNTYEVNERVRQYA 65

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG--------- 289
               +G + +P+        M++         D   NI   ++L    +           
Sbjct: 66  ETNIYGFDFDPDLKKAARMNMVMAG-------DGHANIFHVNSLDYPDWEDPNELNKIKA 118

Query: 290 ---------------------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                                 +F    +NPPFG K + +K+  +K   +          
Sbjct: 119 SIKQSLERMADIDNNYTDDARGKFDMIFTNPPFGAKVKVEKEIADKYDLSKY-------- 170

Query: 329 PKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
              SD   +LF+      L+     GG+ AIVL    L N         +R W+LEN  I
Sbjct: 171 ---SDAPEVLFIEACYKLLKP----GGKMAIVLPDGILGNPNTLP----VREWILENFKI 219

Query: 388 EAIVALPTDLFFR-TNIATYLWILSNR--------KTEERRGKVQLINATDLWTSIRNEG 438
            A V L  + F     +   L  L  +        +  +   +V +  A  L    R   
Sbjct: 220 LASVDLAVEAFLPQVGVQASLLFLQKKTDNDRNIARETDEDYEVFMAIAEKLGKDRR--- 276

Query: 439 KKRRIINDDQRRQILDIYVSR 459
                + D+   +IL    +R
Sbjct: 277 GNPIYVRDEDGAEILFTVDNR 297


>gi|282915750|ref|ZP_06323520.1| type I site-specific deoxyribonuclease methyltransferase subunit
          [Staphylococcus aureus subsp. aureus D139]
 gi|284023308|ref|ZP_06377706.1| type I restriction-modification system M subunit [Staphylococcus
          aureus subsp. aureus 132]
 gi|284023441|ref|ZP_06377839.1| type I restriction-modification system M subunit [Staphylococcus
          aureus subsp. aureus 132]
 gi|282320379|gb|EFB50719.1| type I site-specific deoxyribonuclease methyltransferase subunit
          [Staphylococcus aureus subsp. aureus D139]
          Length = 51

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 6  GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE 45
             A L   +W  A DL G+   ++F   IL     R L 
Sbjct: 9  QQQAELHKKLWSIANDLRGNMDASEFRNYILGLIFYRFLS 48


>gi|150026174|ref|YP_001297000.1| modification methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
 gi|150026184|ref|YP_001297010.1| modification methyltransferase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772715|emb|CAL44198.1| Probable modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772725|emb|CAL44208.1| Probable modification methyltransferase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 754

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 131/391 (33%), Gaps = 62/391 (15%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNA--KAIFEDFDFSSTIA--RLEKAGLLYKICKNFS 141
           ++L+          L   I + S     K     F F   +    LE   ++ KI KN  
Sbjct: 215 HNLNNAILEAITRQLADKINNLSKGYSWKD---RFSFIKNVDYSLLEYKKIITKIEKNI- 270

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             +   +     ++   Y+  ++R G   ++     +TP  +  L   L     + +   
Sbjct: 271 -FKPFQNDEKQDILGKAYKIFLKRAGKIDNKN--IILTPDHMKSLMVELARLNVNDV--- 324

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----HKIPPILVPHGQELEPETHAVCVA 257
                  + D   GTGGFL +AM  +    ++     K        G E++    A+  +
Sbjct: 325 -------VLDTCTGTGGFLMEAMEVLIKKANNNETLIKNIKENQLIGFEVDSVLFALACS 377

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M +         D   N+   S+L  D       +       +    +  K  +   ++
Sbjct: 378 NMFLHG-------DGRTNLLFRSSLLDDKNENIINNKDKDLLNYINSLKPTKCIINPPYE 430

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                +F                     L+      G+  I++ +  L   + G      
Sbjct: 431 TNNSIKFT-----------------LQALK-YLEQNGKLVIIMPTPTLTQNQNGITAD-- 470

Query: 378 RRWLLENDLIEAIVALPTDLFFRT--NIATYLWILSNRKTEERRGKVQLINA-TDLWTSI 434
              +L+   ++ ++ +P +LF      + T ++  +      +  +V   N   D + SI
Sbjct: 471 ---ILKIAKLDFVIKMPYNLFAEQKRTVNTSVFGFTKT-PHNQNDEVLFYNLEEDGFVSI 526

Query: 435 RNEGK--KRRIINDDQRRQILDIYVSRENGK 463
           +++G+  K     +D R  I+D   + +  K
Sbjct: 527 QHKGRVDKFNKW-EDIRSNIVDSIFNSKEAK 556


>gi|67459769|ref|YP_247393.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
 gi|67005302|gb|AAY62228.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia felis URRWXCal2]
          Length = 159

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 24/172 (13%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------KRFHYCLSNPPFGKK-WEKDK 309
              +++  +          IQQ  TL    +         +F    +N PF +   +K  
Sbjct: 1   MNTVLQGYD------GHSEIQQIDTLRNPYYISSKTSQQLKFDIIATNMPFSQTITKKTI 54

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +   +N     +  G+   ++G    ++H    L+      GR A+V+    LF   
Sbjct: 55  KNGKTITENHIAPLYYNGIA-KNNGDAACVLHCLQNLKES----GRMALVVPEGFLFRKD 109

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILS-NRKTEERR 419
             S    +R++LL    ++ +++LP   F   T + T +   +   K ++++
Sbjct: 110 TSS----VRQFLLSKAKLQLVISLPQSTFLPYTGVKTSILYFTDAHKPDKQK 157


>gi|88810721|ref|ZP_01125978.1| type I restriction enzyme, modification chain [Nitrococcus
          mobilis Nb-231]
 gi|88792351|gb|EAR23461.1| type I restriction enzyme, modification chain [Nitrococcus
          mobilis Nb-231]
          Length = 151

 Score = 71.9 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 4  FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-----PTRSAVREK 58
               + L + +W++ ++L G    + +   +L    ++ +    +     P  S   + 
Sbjct: 1  MALKKSQLYSSLWQSCDELRGGMATSQYKDYVLTLLFMKYISDKRDSLIEVPRGSRFADM 60

Query: 59 YLAFGGSNIDLESFVKVAGY 78
              G   I  +       Y
Sbjct: 61 VALRGDKEIGDDLLGDAYEY 80



 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 128 EKAGLLYKIC--KNFSGIEL--HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +K   L ++     F+ +        + D ++ + YE+L+R F +E  +    F TP + 
Sbjct: 43  DKRDSLIEVPRGSRFADMVALRGDKEIGDDLLGDAYEYLMRHFATESDKSKGQFYTPAEA 102

Query: 184 VH 185
             
Sbjct: 103 SR 104


>gi|320450645|ref|YP_004202741.1| N-6 DNA methylase family [Thermus scotoductus SA-01]
 gi|320150815|gb|ADW22193.1| N-6 DNA methylase family [Thermus scotoductus SA-01]
          Length = 1093

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 92/280 (32%), Gaps = 43/280 (15%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           S      FE+  FS  +    +  L L ++    +  +     + + V+ +IY++ +   
Sbjct: 333 SQAYAEPFEEETFSWILETNGEMDLALQRLILRVNAYDF--SGLSEEVLGDIYQNFL--- 387

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +  +   +F TP++VV L         +        +   + DP CG+G FL   ++H
Sbjct: 388 PPDKRKRLGEFYTPKEVVDLILR------ETALAHGESLYPEVLDPACGSGSFLVRYLHH 441

Query: 227 VADCGSHHKIPPI-----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +      +            G +L P   A      L+       +     ++   ++
Sbjct: 442 RMEDAKARGVHLDSEALSRSIWGFDLNP-FAAYVSMFQLLWGFLRLKKGKPEVHVYNLNS 500

Query: 282 LSKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           L  D                  K + Y + NPP+ +          ++      G+ G  
Sbjct: 501 LLDDSDIAFLVKRSPGEEARDEKEWDYVVGNPPYIRAERAKYGQAIRDLYREVWGQNG-- 558

Query: 328 LPKISDGSMLFLMHLA----NKLELPPNGGGRAAIVLSSS 363
                D  +LFL           +     GG+  +V+S  
Sbjct: 559 -----DTGLLFLWRAMRGSGATAKPWVKKGGKLGMVVSGG 593


>gi|291527610|emb|CBK93196.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium rectale M104/1]
          Length = 941

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 95/317 (29%), Gaps = 54/317 (17%)

Query: 136 ICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           I   F  I +     P    M   Y   + ++ S  ++     +TP+ +  L   +    
Sbjct: 323 IFSIFENIVMKMKLHPKIDIMGTFYTVFL-KYASGDAKDKGIVLTPKHITELFCDIA--- 378

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----------ADCGSHHKIPPILV-PH 243
            +    +       + D   GTG FL  A+  +           D     K         
Sbjct: 379 -EHYLGKKLNEKTKVLDICTGTGAFLISALARMDSNIDALTISEDEKKERKAYVRSNCLI 437

Query: 244 GQELEPETHAVCVAGMLIRRLESDP----------RRDLSKNIQQGSTLSKDLFTGKRFH 293
           G E EPE  ++  A M                      +++NI+    ++          
Sbjct: 438 GVEREPEMFSLAYANMRFHGDGRSNLYACSSLLKHNGIVNENIKTKEKITLKEELESLEE 497

Query: 294 ---YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
                + NPP+      +K+    E + G+                   +     L    
Sbjct: 498 KPIVGMVNPPYAL-LNSEKNDKSGEKQTGQSE-----------------LDFVYSLLEYL 539

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLW 408
             GG   +++  S  F+      +S +R+ +LE   + A + +P  LF      + T + 
Sbjct: 540 KEGGIGIVIIPMSCAFS----KTDSLMRKEILEKHTLLATMTMPARLFQDSDVGVNTCIM 595

Query: 409 ILSNRKTEERRGKVQLI 425
           +       +   +   +
Sbjct: 596 VFRAHIPHKDSSQSVFL 612


>gi|224418075|ref|ZP_03656081.1| restriction modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|253827404|ref|ZP_04870289.1| restriction-modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313141612|ref|ZP_07803805.1| restriction modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|253510810|gb|EES89469.1| restriction-modification enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313130643|gb|EFR48260.1| restriction modification enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 1322

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 69/487 (14%), Positives = 142/487 (29%), Gaps = 53/487 (10%)

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
             +F N  + + S     N  N+L+ +      N   +     F+          +L ++
Sbjct: 337 DNAFSNRYKDTPSRNNIENIFNDLKYFQNG-DFNFLEVHNKELFNKNF------NILLQV 389

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
                 I+   D      + + +E  I        +    + TP  +V+     L    D
Sbjct: 390 VLMLEDIKFSEDNSQF--LGDFFESYIHDM----PQHEGQYFTPVPLVNFIIYSLPVLKD 443

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
           +           + D  CG G FL++         S       +   G + +     +  
Sbjct: 444 SR----------VLDFACGAGHFLSE--------YSKINNTYEVQYKGIDKDQRLAKISA 485

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
               +     D        I+    L   +      +  +SNPP+             + 
Sbjct: 486 IASFMYGKTMD--------IKYDDALKHGIIENDSINTIISNPPYSVDG---FLRTLNKT 534

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           +      F   +   +D    F      K        G  ++VL SS   N    +   +
Sbjct: 535 EKESYTLFNKNISLDTDKIECF---FIEKASQVLESYGLLSLVLPSSIFSNNDTITI--Q 589

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            R  LL +  I AI       FF+T     + + + +K  ++    Q   A   +  I  
Sbjct: 590 TREILLRDFYIIAICEFGNQTFFKTGTQP-IILFAIKKLRDKNITTQETRAQYFYKLIME 648

Query: 437 EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI--KVLRPLRMSFILDKTG 494
           +         ++  ++L  Y +    K+ +M++   FG       +       +I     
Sbjct: 649 DKTDNPY--KEELDELLHSYANFMRYKY-KMIEKLFFGVLENIDSIHHNNFKEYIQTYND 705

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
           + + E +    K       +     + + + I      +         +E   +K     
Sbjct: 706 ILKKEKEKYNSKTKKYKDKYPFTPSQTLQEFIKQKEAEKFLYFCYALDSEPLIIKAPKDN 765

Query: 555 SFIVAFI 561
                F+
Sbjct: 766 EKQKKFL 772


>gi|330904327|gb|EGH34899.1| hypothetical protein PSYJA_40355 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 67

 Score = 71.5 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 19 AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY 78
          A+ L G    ++F + I     L+R     E     V  + +  G S    E+FV     
Sbjct: 1  ADILRGKMDASEFKEYIFGMLFLKRCSDVFEERYEEVVAQEIRAGKS--QAEAFVSAENP 58

Query: 79 SFY 81
           +Y
Sbjct: 59 RWY 61


>gi|320354541|ref|YP_004195880.1| hypothetical protein Despr_2450 [Desulfobulbus propionicus DSM
           2032]
 gi|320123043|gb|ADW18589.1| protein of unknown function DUF450 [Desulfobulbus propionicus DSM
           2032]
          Length = 713

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 131/477 (27%), Gaps = 122/477 (25%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR------ 97
           ++  ++  +    +K L      ++ E         F    +   + L            
Sbjct: 180 IDDLIKLDKLVNEKKSLKDLILEMEDEVLANAGVDVFEEMFKLIFTKLYDELEGGRDKKR 239

Query: 98  ----NNLESYIASFSDNAKAIFEDF--DFSSTIARLEKAGLL-YKICKNFSGIELHPDTV 150
                N            + +F+     +        K  L    +    S +E      
Sbjct: 240 HLVFKNYGDTETELKAKIQDLFDKACAKWEGVFPENVKIDLTPSHLAVCVSSLEKVKLFN 299

Query: 151 PDRVMSN-IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            +  + +  +E+LI +           + TPR V+ +   +L          +P    TL
Sbjct: 300 SNLEVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------NPQAHETL 346

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE---------THAV---CVA 257
            D   G+ GF    + +V +     +          + +P            A+     A
Sbjct: 347 IDTAAGSCGFPVHGIFYVWEQIMKEEGLAKSHLFTTDKKPARCEDYVRDKVFAIDFDEKA 406

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKR---------------------- 291
             + R L      D   N+   +TL      +  + +                       
Sbjct: 407 VRVGRTLNL-IAGDGQTNVLHLNTLDYERWDEKTSDETWIDIYGEGWKKLRKLRLDKTSN 465

Query: 292 ----FHYCLSNPPFGKKWEK---------------------DKDAVEKEHKNGELGRFGP 326
               F   ++NPPF    ++                     D         +     F  
Sbjct: 466 RDFGFDVLMANPPFAGDIKETRILAKYDLARSVRLDKIGKVDPKDKNIVTAHDRAPSFTE 525

Query: 327 GLPKI-------SDGSM---------------LFLMHLANKLELPPNGGGRAAIVLSSSP 364
            L          +DG+                LF+    N L+     GGR A+VL    
Sbjct: 526 ALHASHEVIYQMADGTYRKVKVKNQNKVGRDILFIERNLNFLKP----GGRMAVVLPQGR 581

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSNRKTEERRG 420
             N    + + ++R +L  +  I A+V L  ++F   T   T +  +     + + G
Sbjct: 582 FNN----ASDKDLREYLAAHCRILAVVGLHGNVFKPHTGTKTSVLFVQKWNDDSKAG 634


>gi|283956930|ref|ZP_06374403.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791656|gb|EFC30452.1| type I restriction-modification system, M subunit [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 249

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 23/210 (10%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----- 93
             L+ L+     T              +I  E F      +     +  +    S     
Sbjct: 32  LFLKFLDDY--ETNLKDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNALSGSDLL 89

Query: 94  TNTRNNLESYIASF--SDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                 L  Y+ +F  +D+ K+I       F     R+     L ++      I      
Sbjct: 90  EFVNKELFPYLKNFKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISF-NKE 148

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                +  +YE L++  GS+    + +F TPR ++     ++           P     +
Sbjct: 149 DEVFALGEVYEKLLKDMGSDGG-NSGEFYTPRPLIKAMVEVI----------DPKPKERI 197

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           YDP+CG+ GFL ++  H+            
Sbjct: 198 YDPSCGSCGFLVESFLHILYKDRTKGKKAN 227


>gi|159027015|emb|CAO86735.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 678

 Score = 71.5 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 110/348 (31%), Gaps = 64/348 (18%)

Query: 120 FSSTIARLEKAG-LLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I ++E     L ++           +   +       ++  +    G    +  + 
Sbjct: 298 LTENINKVENGESQLKRVFSKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDV 357

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
            +TP  +  L   L     D+           ++D   G+ G L  AMN +         
Sbjct: 358 VLTPSYIATLLVKLARVNKDS----------YVWDFAAGSAGLLVAAMNEMLVDAKNNIT 407

Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              +              G EL    + + +  M++         D S NI    ++   
Sbjct: 408 SPQELTQKEIKIRTEQLLGLELLSSVYMLAILNMILMG-------DGSSNILNKDSIKD- 459

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLAN 344
                 + +  +N  F                      F    P  ++G+ M F+     
Sbjct: 460 --FDGNYGFGQTNSKFPADA------------------FVLNPPYSANGNGMNFVEKALG 499

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNI 403
            +       G AAI++ +S    G   + E    + +LE   + A + +P DLF   +++
Sbjct: 500 MMNK-----GYAAIIIQNSA---GSGRAKEYN--KKILEKHTLLASIKMPIDLFIGKSSV 549

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            T +++    +   +   V+ I+ ++   +  N  K    + D    +
Sbjct: 550 QTNIYVFKVNEKHHKDEIVKFIDFSNDGYTRTNRKKSSNNLKDTDCAK 597


>gi|303235246|ref|ZP_07321864.1| conserved domain protein [Finegoldia magna BVS033A4]
 gi|302493560|gb|EFL53348.1| conserved domain protein [Finegoldia magna BVS033A4]
          Length = 154

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 16/113 (14%)

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
           D+ K +FED D  +T ++L     EK   L  I      I     +        + YE+L
Sbjct: 23  DDIKGLFEDVD--TTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYL 80

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           I  + S   +   +F TP+ V  L   L++D   ++ K        +YDPTCG
Sbjct: 81  IFNYASNAGKSGGEFFTPQTVSKLLARLVMDGKTSINK--------VYDPTCG 125


>gi|256848825|ref|ZP_05554259.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-1A-US]
 gi|256714364|gb|EEU29351.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-1A-US]
          Length = 688

 Score = 71.2 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 77/336 (22%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +     +  +TPR + ++   L     D+           ++D   G+ GFL  AM+ 
Sbjct: 367 SIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAMGSAGFLVSAMDI 416

Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +                  +        G E+    + + V  M++         D S N
Sbjct: 417 MVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG-------DGSSN 469

Query: 276 IQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +  G++  L K+ +T    +  L NPP+  + +                           
Sbjct: 470 MVNGNSHELYKN-YTQFPANVFLLNPPYSAEGKG-------------------------- 502

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              +F+    +++       G AAI++  +               + +L+N+ + A + +
Sbjct: 503 --FIFVQEALSQMTK-----GYAAIIIQENAGSGNGLPYT-----KNILKNNTLVASIHM 550

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRR----IIN 445
           PTDLF    ++ T +++    +  E    V  ++ + D +T +  +  G+K         
Sbjct: 551 PTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQKVNLRDTDHA 610

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
            ++  +++ I   ++                 I + 
Sbjct: 611 KERYEEVVAIVSDKKPKTNYYTERNHKVIKDTITLE 646


>gi|284053228|ref|ZP_06383438.1| type I restriction enzyme M protein [Arthrospira platensis str.
           Paraca]
          Length = 122

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 12  ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
              ++K A+ L G+ + +D+  V L    L+ +    E  +  + E+Y          +S
Sbjct: 42  EAELFKAADKLRGNMEPSDYKHVALGLIFLKHICDRFETRQRELAEEY-----PEGVEDS 96

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTR 97
               A   F+       S   +   +
Sbjct: 97  DEYTAENVFWVPQAARWSHPQANAKQ 122


>gi|262046554|ref|ZP_06019515.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-3A-US]
 gi|260573003|gb|EEX29562.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus MV-3A-US]
          Length = 688

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 77/336 (22%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +     +  +TPR + ++   L     D+           ++D   G+ GFL  AM+ 
Sbjct: 367 SIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAMGSAGFLVSAMDI 416

Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +                  +        G E+    + + V  M++         D S N
Sbjct: 417 MVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG-------DGSSN 469

Query: 276 IQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +  G++  L K+ +T    +  L NPP+  + +                           
Sbjct: 470 MVNGNSHELYKN-YTQFPANVFLLNPPYSAEGKG-------------------------- 502

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              +F+    +++       G AAI++  +               + +L+N+ + A + +
Sbjct: 503 --FIFVQEALSQMTK-----GYAAIIIQENAGSGNGLPYT-----KNILKNNTLVASIHM 550

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRR----IIN 445
           PTDLF    ++ T +++    +  E    V  ++ + D +T +  +  G+K         
Sbjct: 551 PTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQKVNLRDTDHA 610

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
            ++  +++ I   ++                 I + 
Sbjct: 611 KERYEEVVAIVSDKKPKTNYYTERNHKVIKDTITLE 646


>gi|256843430|ref|ZP_05548918.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus 125-2-CHN]
 gi|293379931|ref|ZP_06626038.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|256614850|gb|EEU20051.1| type II restriction-modification system methylation subunit
           [Lactobacillus crispatus 125-2-CHN]
 gi|290923507|gb|EFE00403.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
          Length = 688

 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 77/336 (22%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +     +  +TPR + ++   L     D+           ++D   G+ GFL  AM+ 
Sbjct: 367 SIDNDRQNDVVLTPRYITNMMARLAHTNKDSF----------VWDLAMGSAGFLVSAMDI 416

Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +                  +        G E+    + + V  M++         D S N
Sbjct: 417 MVKDAKNTIQDKQKLECKIQNIKENQLLGVEILGNIYILAVLNMILMG-------DGSSN 469

Query: 276 IQQGST--LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +  G++  L K+ +T    +  L NPP+  + +                           
Sbjct: 470 MVNGNSHELYKN-YTQFPANVFLLNPPYSAEGKG-------------------------- 502

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              +F+    +++       G AAI++  +               + +L+N+ + A + +
Sbjct: 503 --FIFVQEALSQMTK-----GYAAIIIQENAGSGNGLPYT-----KNILKNNTLVASIHM 550

Query: 394 PTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSI--RNEGKKRR----IIN 445
           PTDLF    ++ T +++    +  E    V  ++ + D +T +  +  G+K         
Sbjct: 551 PTDLFGGKASVQTAIYVFKVARPHEEDDLVTFLDFSEDGYTRMNRKKSGQKVNLRDTDHA 610

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
            ++  +++ I   ++                 I + 
Sbjct: 611 KERYEEVVAIVSDKKPKTNYYTERNHKVIKDTITLE 646


>gi|294786304|ref|ZP_06751558.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|294485137|gb|EFG32771.1| conserved hypothetical protein [Parascardovia denticolens F0305]
          Length = 562

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 92/245 (37%), Gaps = 46/245 (18%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVA-----DCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
             + L DP CGTGGFL ++   +      +     +       +G +L+P    +  A M
Sbjct: 46  KDKVLLDPACGTGGFLFESYRTLLSNASDEQRDEIRTWAHHNLYGVDLDPINVKLSRALM 105

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF-------------TGKRFHYCLSNPPFGKKWE 306
           +         +D S NI  G +L +  +                 +   L+NPPFG+K +
Sbjct: 106 I-------GAKDGSTNIVLGDSLREQKWGEFPMFPPVIGSEADGSYDVVLTNPPFGEKLK 158

Query: 307 ------KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
                 K       +H NG          ++    ++F+      L      GGR  IVL
Sbjct: 159 IRTTDAKRAKYTICKHTNGGANSEQYADTELG---LVFMERAYRLLAE----GGRLGIVL 211

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR 419
             +  F+          R+W+ ++  +  ++ +P + F       T  ++++ +     +
Sbjct: 212 PETYFFSTSYRW----FRQWVDQHFDVIGVMNVPMEAFQGFCRAKTNFYVMTKK---TTK 264

Query: 420 GKVQL 424
           GKV L
Sbjct: 265 GKVIL 269


>gi|238898226|ref|YP_002923907.1| putative S of type II restriction endonuclease, N6_Mtase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465985|gb|ACQ67759.1| putative S of type II restriction endonuclease, N6_Mtase domain
           protein [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 679

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 124/377 (32%), Gaps = 82/377 (21%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           + TL +T   +N+   I   S   K IF           ++  G+ YKI           
Sbjct: 292 IRTLQNTLMTDNINKVINGESQ-LKRIFTKI--------VDDLGIYYKI----------- 331

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +       ++  +    G    +  +  +TP  V  L   L     D+          
Sbjct: 332 -GLATDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLVKLARVNKDS---------- 380

Query: 208 TLYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCV 256
            ++D   G+ G L  AMN +               S           G EL    + + +
Sbjct: 381 YVWDFATGSAGLLVAAMNEMLIDAKNSITSPEALRSKEIRIKAEQLLGLELLSSVYMLAI 440

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++         D S NI   ++L+       ++ +  ++  F               
Sbjct: 441 LNMILMG-------DGSSNILNKNSLTD---FDGKYGFGQTDKHFPANA----------- 479

Query: 317 KNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                  F    P  + G+ M+F+    + +       G AAI++  S            
Sbjct: 480 -------FVLNPPYSAQGNGMVFVEKALSMMNS-----GYAAIIIQGSA-----GSGKAK 522

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           EI + +L+   + A + +P DLF   +++ TY+++    +   R   V+ I+ ++   + 
Sbjct: 523 EINQKILKKHTLIASIKMPIDLFIGKSSVQTYIYVFKVGEAHHRDEMVKFIDFSNDGYTR 582

Query: 435 RNEGKKRRIINDDQRRQ 451
            N  K    + D    +
Sbjct: 583 TNRKKASNNLKDTDHAK 599


>gi|301301104|ref|ZP_07207262.1| N-6 DNA Methylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851300|gb|EFK79026.1| N-6 DNA Methylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 694

 Score = 70.8 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 95/292 (32%), Gaps = 69/292 (23%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E  +  +  +TPR V  L   L              M   ++D   G+GGFL  AM+ 
Sbjct: 372 SIENDKQNDVVLTPRYVTKLMVKL----------TRTDMNSYVWDTAMGSGGFLVSAMDE 421

Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +                  +        G EL    + + V  M++         D +  
Sbjct: 422 MFKDAKEKIQDKKKLEEKLEHIKKEQLLGVELLGNIYILAVLNMILMG-------DGASK 474

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           ++ G +           +  L NPP+    +                             
Sbjct: 475 MENGDSHKIYDNLEFPANVFLLNPPYSADGKG---------------------------- 506

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALP 394
             F+    +K++               + L    AGSG      + +L+++ + A + +P
Sbjct: 507 FNFVAEAFSKMQKGY-----------GAILIQENAGSGAGLPYTKKILDHNTLVASIHMP 555

Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
            DLF   +++ T +++    K  + +  V  I+ ++   S +N  K  + +N
Sbjct: 556 NDLFNGKSSVQTAIYVFKVNKPHDVKKAVTFIDFSEDGYSRQNRKKASQEVN 607


>gi|297585238|ref|YP_003701018.1| N-6 DNA methylase [Bacillus selenitireducens MLS10]
 gi|297143695|gb|ADI00453.1| N-6 DNA methylase [Bacillus selenitireducens MLS10]
          Length = 707

 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/301 (18%), Positives = 99/301 (32%), Gaps = 47/301 (15%)

Query: 108 SDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           S N +AI     DF+      E    L       + ++L      D  +  +Y  L    
Sbjct: 151 SSNLRAILNSIIDFNKIDVAKEDFETLI----KINELDLEFIRGEDF-LGLLYMAL---S 202

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT----- 221
            S+  + +  F TP  VV           +            + DP CG+G FL      
Sbjct: 203 ASKDRKNSGSFYTPSKVVDYIIN------EDSIDYENIDQPKILDPCCGSGNFLIKIFIS 256

Query: 222 ---DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
              + M        + K     + +G +++     +    +++  L       L+ NI+ 
Sbjct: 257 LEKEFMKKGIRREIYEKEIINEIIYGYDIDQTAVDLSKINLIL--LTKSQIYSLNPNIEC 314

Query: 279 GSTLSKDLFT------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            +TL ++  +         F++ + NPP+G  +  D+     +           G    S
Sbjct: 315 KNTLIEEAPSLFFDSFNHSFNWIIGNPPWGYSFTNDEKKQLNQI---------YGTNNQS 365

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
             S                  G+ + VL  S L         S IR+ LLEN  ++ I  
Sbjct: 366 IESFA---LFIRCGLDLLEENGQLSFVLPESLLN----IKIHSSIRQDLLENYNVKKIRK 418

Query: 393 L 393
           L
Sbjct: 419 L 419


>gi|229088737|ref|ZP_04220294.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44]
 gi|228694562|gb|EEL47981.1| Eco57I restriction endonuclease [Bacillus cereus Rock3-44]
          Length = 548

 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 102/301 (33%), Gaps = 44/301 (14%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +      +    +   ++S+IYE   +   +E  +    F TP ++V+L        + 
Sbjct: 128 VELIDNYIIQEGELGSELISSIYE---KSLNAEEKKRLGQFYTPNNIVNLMID-----ET 179

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAV 254
            L K      +++ DP CG G FL + +  +                 HG ++ P    +
Sbjct: 180 NLRKIDFNNTKSIIDPACGAGIFLVNIIKMMKKRNQGLSLAKIIYNSLHGNDINPFAIFL 239

Query: 255 CVAGM---LIR-------RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
               M   L+         +E   +    KNI   +T+++D    +++ Y + NPP+ K 
Sbjct: 240 TKLNMSCELLNTMKVPEEVMEFLDKYADFKNIVLVNTITED--NDEKYDYIIGNPPYFKL 297

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG--GRAAIVLSS 362
            +K     E   +         GL             +   L+     G           
Sbjct: 298 SDKKFKNHEMYTEIMYGQPNIYGL------------FIYWSLKHSKENGYISLIVPQSFK 345

Query: 363 SPLFNGRAGSGESEIR-RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           S L+     +  S+ R + L+            T +F     A  +  + N+K  + + K
Sbjct: 346 SGLYFLNLRNELSKYRIKSLINFKS-------RTKIFKNVLQAVIIMTIKNQKKGKAKVK 398

Query: 422 V 422
           V
Sbjct: 399 V 399


>gi|161528118|ref|YP_001581944.1| restriction modification system DNA specificity subunit
           [Nitrosopumilus maritimus SCM1]
 gi|160339419|gb|ABX12506.1| restriction modification system DNA specificity domain
           [Nitrosopumilus maritimus SCM1]
          Length = 730

 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 111/357 (31%), Gaps = 63/357 (17%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           FD    +       L+ KI        L    + +  +    + ++ +           +
Sbjct: 217 FDLDFKLPH----DLISKIVFKLQKYSLTKSQLKNMPLGFS-QGILSK-------STGAY 264

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           +TP  +    + L                  + D  CG+G FL +A              
Sbjct: 265 LTPDAISEFMSHLFKINSK----------MKVLDLACGSGAFLVNAGKF----------- 303

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPR--RDLSKNIQQGSTLSKDLFTGKRFHYC 295
                 G +   +   +      +  +++      D    ++  + +S        F   
Sbjct: 304 -GASVVGVDANRQIANIAKINCYLNGIKNASVICADSLGPLENLAKMSSGNIQTNSFDLV 362

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           L++PPFG +  KD         +G   RF            LF+      L+     GG+
Sbjct: 363 LTHPPFGLRLTKDYANFSMLTISG--NRFMES---------LFIERSWELLKE----GGK 407

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRK 414
             I+L      N        +IR ++  N  +  I++LP   FF  ++I T + +L    
Sbjct: 408 LIIILPEGITSNKSTR----KIREFITTNFKVLGIISLPDYAFFPYSSIKTTILVLEKLG 463

Query: 415 TEERRGKVQLINATDLWTSIRNEG-KKRRIINDD-QRRQILDIYVSRENGKFSRMLD 469
            +       +  A       +N G  K+ I+  +    +IL+ +            D
Sbjct: 464 PKIISNSYMIFTA-----YAKNLGYDKQGILAKESDFSKILEDFNKFLQTNKGSKFD 515


>gi|164688287|ref|ZP_02212315.1| hypothetical protein CLOBAR_01932 [Clostridium bartlettii DSM
          16795]
 gi|164602700|gb|EDQ96165.1| hypothetical protein CLOBAR_01932 [Clostridium bartlettii DSM
          16795]
          Length = 80

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 7/52 (13%), Positives = 19/52 (36%)

Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
           +W +A+ L  +    ++  ++L    L+ +          + E+   F   
Sbjct: 9  KLWASADKLRNNMDAAEYKHIVLGLIFLKYVSDTFMEKHKELMEEDEEFAED 60


>gi|312874697|ref|ZP_07734718.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|311089774|gb|EFQ48197.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
          Length = 675

 Score = 70.4 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 118/378 (31%), Gaps = 80/378 (21%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM---SN 157
              +   ++  K +FE  D    I        + K        ++ P    +  +     
Sbjct: 283 NDKVEMVNNYLKPVFEKRDLWKPI----NGESVIKSVYKQVKEDILPLLESNIRLDFTGK 338

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           I   L      +  +  +  +TPR V +L   +     D+           ++D   G+ 
Sbjct: 339 ILNSLNDWVSIDNDKKNDVVLTPRFVTNLMARITRTNKDSF----------VWDTCMGSS 388

Query: 218 GFLTDAMNHVADCGSH-----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
           GFL  AM+ + D   +            K        G E+    + + V  M++     
Sbjct: 389 GFLVSAMDLMIDDAKNTIKDNTVLDSKIKNIKQNQLLGIEILGNIYILAVLNMILMG--- 445

Query: 267 DPRRDLSKNIQQGSTLSK----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               D S  I  G +  +            +  L NPP+    +                
Sbjct: 446 ----DGSSQIICGDSHKEAPDFIKTHNFPANVFLLNPPYSAPGKG--------------- 486

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI-RRWL 381
                        + F+    +K++               + L    AGSG+ ++  + +
Sbjct: 487 -------------LNFVDEALSKMQTGY-----------GAVLIQENAGSGQGDVYAKRI 522

Query: 382 LENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LE + + A + +P DLF   +++ T +++       E    V  I+ ++     +N    
Sbjct: 523 LEKNTLLASIHMPNDLFNGKSSVQTAIYLFQVNCPHEVDDMVTFIDFSEDGYVRQNRKHS 582

Query: 441 RRIINDDQRRQILDIYVS 458
            + +N       L+ Y  
Sbjct: 583 TQKVNLRNVDHALERYNE 600


>gi|206895091|ref|YP_002247705.1| HsdM, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206737708|gb|ACI16786.1| HsdM, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 203

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 29/211 (13%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGD-FKHTDFGKVILPFTLLRRLECALEPTRSAVRE 57
           M +         L + +W  A     D  K T++ +    F  L+  +      R   RE
Sbjct: 1   MAQNNNKVDFHRLGSELWDIANIFRDDTLKTTEYLEEFSYFLFLKLFD-----EREKQRE 55

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSL----STLGSTNTRNNLESYIASFSDNAKA 113
           +     G+    +         F   +E  L     T+ + +    +  Y+ +       
Sbjct: 56  ELARLDGTKFVPDLPNH---LRFSTWAEKILASDGKTVKTDDGEFTIVDYVRNIFSELAE 112

Query: 114 IFEDFD---------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           + +            F + I R+  +  + ++ K    +EL        VM   YE +++
Sbjct: 113 VKDHDGRDLSLFRRLFKNHIWRIRYSPTIKELIKRLKDLEL---EQNFDVMGRAYEFVVQ 169

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + G +  +    + TPR ++H    L    +
Sbjct: 170 KLGEQ--KQYGQYFTPRHIIHFMVELADPGN 198


>gi|298531182|ref|ZP_07018583.1| hypothetical protein Dthio_PD0425 [Desulfonatronospira
          thiodismutans ASO3-1]
 gi|298509205|gb|EFI33110.1| hypothetical protein Dthio_PD0425 [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 116

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           N +W  A+ L G    +++  V+L    L+ +  + +   
Sbjct: 47 ENQMWAAADKLRGHMDASEYKYVVLGLIFLKYISDSFQAKY 87


>gi|302348051|ref|YP_003815689.1| Site specific DNA-methyltransferase [Acidilobus saccharovorans
           345-15]
 gi|302328463|gb|ADL18658.1| Site specific DNA-methyltransferase [Acidilobus saccharovorans
           345-15]
          Length = 471

 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 93/290 (32%), Gaps = 56/290 (19%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP +V +                         DP CG G FL+          
Sbjct: 14  KVYGQFFTPPEVANFIV--------DFASTFVQEKNRAVDPACGDGVFLSAL------LR 59

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S  +    +   G  L      V  +  ++            +          D      
Sbjct: 60  SGFREVWGMDIDGSVLNRMPEHVRKSAKVLIGDALVMNPLFPQ---------DDALPANS 110

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPPF  K+ + +D+  + ++ G  GR    +       +LFL            
Sbjct: 111 FDLVVGNPPFSAKFGRVRDSRLELYELGR-GRRSQAI------EVLFLERFITLARP--- 160

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWIL 410
            GG   I+L      N         +RR++L+  ++  +V+LP  +F    +  +   +L
Sbjct: 161 -GGVIGIILPDGIFINKNYEY----VRRFILKYKVL-GVVSLPRGIFRSSLSTTSKTSVL 214

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             RK      +V +  A DL                D+ ++++ +Y  R+
Sbjct: 215 FLRKARGDNDEVFMYEARDL----------------DELQEVIRVYRERK 248


>gi|218246498|ref|YP_002371869.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 8801]
 gi|218166976|gb|ACK65713.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 8801]
          Length = 1005

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/502 (12%), Positives = 141/502 (28%), Gaps = 52/502 (10%)

Query: 105 ASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            + +   + + + F F+ T  R  L      Y + +  +   ++      + + ++YE+ 
Sbjct: 233 NNIARELQGVIDTF-FTGTTKRNTLGTIERYYAVIRR-TAASIYNHQEKQKFLKSVYENF 290

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +  + ++      TP ++V      +         K        + DP  GTG F+T
Sbjct: 291 YKAYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFGKLLCDPGVEILDPATGTGTFIT 350

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           + + ++       K       H  E+    + +    +     +     +   +I    T
Sbjct: 351 ELIEYL--PKDKLKYKYQNEIHCNEVAILPYYIANLNIEYTYKQKMGEYEEFDHICFVDT 408

Query: 282 LSKDLF---------------------TGKRFHYCLSNPPFGKKWEKDKDAVEKE----- 315
           L    F                       ++    + NPP+  K E              
Sbjct: 409 LDNTSFTGKQLDLFAMTVENTQRIKDQNDRQISVIIGNPPYNAKQENFNQNNANRKYTEI 468

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL----FNGRAG 371
            K  +      G  +  +                 N  G  A + +SS L    F+G   
Sbjct: 469 DKLIKDTYIKQGTAQNKNVVYDMYTRFIRWASDRLNKDGIIAFITNSSFLDALAFDGFRK 528

Query: 372 SGESEIR-RWLLEN-DLIEAIVALPTDLF-------FRTNIATYLWILSNRKTEERRGKV 422
           S + E    + ++    + AI      +F       F T   T + IL   K  +  G  
Sbjct: 529 SIKDEFSYAYFIDCGGNVRAISG-KDGIFICEKHTIFGTAAMTGIAILFLVKDSQATGNK 587

Query: 423 QLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
                      +R    K   +  +   +I   +      K +  L+     +  +  L 
Sbjct: 588 IFYANPFHVHELRE--NKLSYLQQNSISKIS--FEHIHPNKKNNWLNQANNDFDDLLPLM 643

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
              +        + +L +             F  D L+  M+  +   + ++        
Sbjct: 644 DKEVKAGKSTEAIFKLFSSGLKTHRDEWVYDFSQDELEKKMK-FFINTYQKTLEDNDYTE 702

Query: 543 NEAKTLKVKASKSFIVAFINAF 564
            +         +         F
Sbjct: 703 KDLIKWDADLKQYLKRNISKEF 724


>gi|283782441|ref|YP_003373196.1| type I restriction-modification system methyltransferase
           subunit-like protein [Pirellula staleyi DSM 6068]
 gi|283440894|gb|ADB19336.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Pirellula staleyi DSM 6068]
          Length = 531

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 83/250 (33%), Gaps = 34/250 (13%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
               A    TP  +  L   + L             I  + DP CG G  L  A + +  
Sbjct: 10  ARHDAGVVYTPATLARLLAEVSLAALHQAGIPKDRTILQIVDPACGEGALLQAASDELKR 69

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
            GS  +    +   G +++P   A+  A             D+   +Q    L +     
Sbjct: 70  VGSPAE---SVHFTGYDIDP--VAIHRA-----GSLVGNSSDVGAQLQVADALDRAAIAN 119

Query: 290 KRFHYCLSNPPF------GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           ++F   LSNPP+       ++  ++K    K       G F   +        LF+    
Sbjct: 120 QQFDLVLSNPPYVSIRRLTQQASREKIDAYKRDYQSACGCFDLYV--------LFVERCL 171

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTN 402
             ++     GG   +++         A    +  RR +LE  L+E ++ L    +F    
Sbjct: 172 ELVKP----GGICGLLVP----SRIAAMKYATACRRLVLEQTLVE-VIDLSKLMMFRGAK 222

Query: 403 IATYLWILSN 412
           +   + ++  
Sbjct: 223 VYPCILVIRR 232


>gi|253827884|ref|ZP_04870769.1| putative methylase [Helicobacter canadensis MIT 98-5491]
 gi|253511290|gb|EES89949.1| putative methylase [Helicobacter canadensis MIT 98-5491]
          Length = 542

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 157/476 (32%), Gaps = 84/476 (17%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
                  ++ + +  +        E F  +  I R     +L  +       E+ P  + 
Sbjct: 46  DKQQIDEDISAILKGYG------LEAFSANPKINR---KKILKALLD----YEITPRDLE 92

Query: 152 DR-VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
           +   +  +++ ++  +         ++ TP +V  L   LL                ++Y
Sbjct: 93  NFIQIIVLHKTILGLY---------EYATPIEVNLLVCKLL----------DMKSNESIY 133

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P CG G  L                      +G+++ P+   +         + S    
Sbjct: 134 NPCCGLGSLLFGMDER------------NFDYYGEDIHPKILYLAK-------ILSIFMG 174

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                +       +  F     +      P              + ++ +L  F   +P+
Sbjct: 175 FKRSYLAVADIFKESAFRSLEANKAFCYFPLESSLNLW------DFRDNDLEPFVKSIPE 228

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           I      FL +     +          I +  S L     G     +R++L E  L+E +
Sbjct: 229 IP-----FLAYTLRHFKQK-------GIFIVRSLLLQKAYG---KRLRKFLKEKRLLEGV 273

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
           V  P ++F        L ILS +       KV  I+A   +     EGK  R+ N     
Sbjct: 274 VEFPRNIFPHQVEEFSLLILSKQ----ENKKVFFIDAQKFYL---KEGKYNRLTN---ID 323

Query: 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           +I D Y+S+++   SR++DYR       K     +   I D   L      +   +    
Sbjct: 324 RIYDEYLSKQDSDISRLVDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVES 383

Query: 511 HQSF-WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
            +    +D     ++    YG++E F++ S KS++ +  K++     I+  +    
Sbjct: 384 KKDEVLMDCYNVGIKDFEDYGFSEVFLEFSPKSDQKRIEKLRIQAYDILLSMRGVS 439


>gi|46199730|ref|YP_005397.1| hypothetical protein TTC1428 [Thermus thermophilus HB27]
 gi|46197356|gb|AAS81770.1| hypothetical protein TT_C1428 [Thermus thermophilus HB27]
          Length = 508

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 22/166 (13%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG----- 63
           A+L +++W  A  + G      F   I P   L RL    E     + E+Y         
Sbjct: 6   ATLESWLWNAACAIRGPVGAPKFKDHIPPLAFLERLSDVFEEELYRLAEEYGNREVALSL 65

Query: 64  GSNIDLESFVKVAGY-SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS 122
                     +  G   FY   E   + +   +    L  Y+   +D  +         +
Sbjct: 66  VEERKEGVIAQGRGLVRFYIPEEVRWTNIRKQDKG--LSQYL---TDAVR--------KN 112

Query: 123 TIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
             +++    +A L  ++ ++   +    +     +  N  +H +R+
Sbjct: 113 KHSKMVMPVEAELRKRVIEHLRELGFKVENGELALEGNSDKHFLRQ 158


>gi|332982562|ref|YP_004464003.1| hypothetical protein Mahau_2005 [Mahella australiensis 50-1 BON]
 gi|332700240|gb|AEE97181.1| hypothetical protein Mahau_2005 [Mahella australiensis 50-1 BON]
          Length = 858

 Score = 70.0 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 112/362 (30%), Gaps = 56/362 (15%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           K+    S      D + D +++ IY H      S  S+    F T   +V       L P
Sbjct: 82  KLAHILSHAISEDDWLKDDIIAWIYRHC---ANSADSKSKTRFYTYDWIVKYIVDNTLTP 138

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQ 245
                 +S   I+ L DP+CG G FL  A +   D              +       +G 
Sbjct: 139 YWRKIGKSVESIK-LLDPSCGGGSFLLYAFDRFYDMYVEEGCVPVGDIPRSILNKNIYGV 197

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGS----TLS----KDLFTGKRFHYCL 296
           +++P    +    + ++    +   D  +KNI        +L      D   G+ +   +
Sbjct: 198 DIDPRAVRIARLNLYMKAKSMNADVDVPTKNIICSDHDMGSLVRHGIHDKVGGQLYDVVV 257

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGG 354
            NPP+    +   +      +              S   +   F+      L       G
Sbjct: 258 GNPPYLNNRKMTDNLRGNIAQWYSH----------SKTDLYAAFIERGLELLVPE----G 303

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
               +   + L+          +R  LL+   I+ IV L  D+F   N++  + I  N  
Sbjct: 304 YLGYITPDTYLY----IKRFETLRSVLLDKLYIDKIVHLGNDVFANANVSVAVLIARNDA 359

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
                           +  +R    K+         +I D YV        + LD   F 
Sbjct: 360 KNR---------GVSWFYDLRRVKDKK-----GALYRIDDRYVYIREQCIFKSLDGERFL 405

Query: 475 YR 476
           Y 
Sbjct: 406 YN 407


>gi|315453673|ref|YP_004073943.1| adenine-specific DNA-methyltransferase [Helicobacter felis ATCC
           49179]
 gi|315132725|emb|CBY83353.1| Type IIS restriction enzyme M protein (Mod),Site-specific
           DNA-methyltransferase (Adenine-specific) [Helicobacter
           felis ATCC 49179]
          Length = 687

 Score = 69.6 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 56/319 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   ++  L +      ++  +  +TPR+VV L   L     D+           ++D 
Sbjct: 336 DIAGRLFNTLTKWLNVPDNKKNDVVLTPREVVDLMVELAQVNKDSF----------VWDY 385

Query: 213 TCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             G+G FL  +MN +                           G E   E + + +  ML+
Sbjct: 386 AAGSGAFLISSMNKMLKDCEEKITEPRARADKINKIKNEQMLGIEKNTEIYLMGILNMLL 445

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                    D S N     +L    F  K+        P   +    K            
Sbjct: 446 LG-------DGSTNFLHRDSLED--FEAKK--------PINYEQGDLKGEPFN------A 482

Query: 322 GRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             F    P  + G   +F+     ++E      GRA +++  +    G            
Sbjct: 483 NVFLLNPPYSAKGKGFIFVERALERMEK-----GRAVVIIQENA---GSGNGWPYTA--Q 532

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE+  + A + +P DLF   +++ T +++            V+ I+ +    +     K
Sbjct: 533 ILEHSTLVASIKMPLDLFVGKSSVQTAIYVFEVGTPHSEDKLVKFIDFSHDGYTRAARKK 592

Query: 440 KRRIINDDQRRQILDIYVS 458
            R   N        + Y  
Sbjct: 593 ARASTNLRDTDHAKERYAE 611


>gi|254412611|ref|ZP_05026384.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196180346|gb|EDX75337.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 1053

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 89/289 (30%), Gaps = 63/289 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S+IYE  +R    E +       TP  +V      +L  D  ++         + DP C
Sbjct: 333 ISSIYEEFVR----ENTTDKGVHYTPGHIVDFILDGVLPWDSEVWDIK------ILDPAC 382

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRR 263
           G+G FL  A   +            +              G ++ P+   V    + +  
Sbjct: 383 GSGIFLVKAFQRLIHRWKKANGGAEITSNILKSLLERNLFGIDINPQAVRVASFSLYLTM 442

Query: 264 LESDPRRD----------LSKNIQQGSTLSKD------LFTGKRFHYCLSNPPFGKKW-- 305
            +    R             + +       +D           ++   + N P+GK    
Sbjct: 443 CDEIDPRHYWQEVRFPRLRDRQLICADFFREDREEFRTQLDADQYDLVVGNAPWGKNSMT 502

Query: 306 ---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              +      + E   G++G             +LFL   A   +     GG+ A++  +
Sbjct: 503 PLAKSWAKDNQWETSYGDIG-------------LLFLPKAAALTKP----GGQIAMMQPA 545

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLW 408
             L   + G+   + R  L     IE IV L      LF      T + 
Sbjct: 546 LALIFNQVGTA-KKFREKLFSQFKIEEIVNLSALRFGLFKDAISPTCII 593


>gi|296127792|ref|YP_003635044.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
 gi|296019608|gb|ADG72845.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
          Length = 405

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 95/280 (33%), Gaps = 49/280 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++    E  +    + TP+ +  L    L+                + DP CG+G F+  
Sbjct: 13  LKNTDIEKRKRLGQYFTPKSIRELLLKKLIS------ISDKKDNVKILDPACGSGEFILS 66

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +                +G E++    ++              +   + +I+   TL
Sbjct: 67  FKEY----------FNNPHLYGFEIDESLVSISK------------KLINNADIKCIDTL 104

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D+    ++ Y + NPP+     K     +K++ +   GR               +  +
Sbjct: 105 KIDIEKSIKYDYVIGNPPY--FEFKPDKETKKKYSDIISGRVN-------------IFSI 149

Query: 343 ANKL-ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFR 400
             KL       GG  A V+  S       G+  S++R +++ N  +E + +   +D F+ 
Sbjct: 150 FIKLGLELLEDGGYLAYVVPPSM----NNGAFFSKLREYIINNSSVEYLHIVEGSDNFYM 205

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            N    L IL    + + +  +   N   ++T  +     
Sbjct: 206 ANQKVMLLILKKTNSHKNKKYIFSKNGITIFTEDKTFLNN 245


>gi|225352860|ref|ZP_03743883.1| hypothetical protein BIFPSEUDO_04494 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225156309|gb|EEG69878.1| hypothetical protein BIFPSEUDO_04494 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 101

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 7  SAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE 45
          +   LA+ IW++A  +    +  ++   IL F   + L 
Sbjct: 2  NKQQLASKIWESANKMRSKIEANEYKDYILGFIFYKFLS 40


>gi|13357657|ref|NP_077931.1| type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|170761898|ref|YP_001752183.1| hypothetical protein UPA3_0103 [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11357067|pir||G82933 type I restriction enzyme M protein, truncated homolog UU100
           [imported] - Ureaplasma urealyticum
 gi|6899055|gb|AAF30506.1|AE002110_4 type I restriction enzyme M protein (fragment) [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827475|gb|ACA32737.1| conserved domain protein [Ureaplasma parvum serovar 3 str. ATCC
           27815]
          Length = 187

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 25/164 (15%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL------EPTRSAV 55
            +      +L   IWK A++L G     DF + +L     R +   L         +   
Sbjct: 3   NKKEIERNNLHATIWKIADELRGAIDGWDFKQYVLGILFYRYISENLTKYINDNEHKIGD 62

Query: 56  REK-YLAFGGSNIDLE-SFVKVAGYSFYNTSEYSLSTL-----GSTNTRNNLESY---IA 105
            +  Y      ++D E     +    FY    +  + +      + N    LE+    I 
Sbjct: 63  HDFNYETCNDDDVDEEMKITLIKEKGFYIKPSFLFANIVKNAEKNENLNETLETVFNNIE 122

Query: 106 SFS------DNAKAIFEDFDFSST---IARLEKAGLLYKICKNF 140
             S       N K +F D D +++       E+   L +I    
Sbjct: 123 GSSSGYDSEKNLKGLFNDIDVNNSRLGSTTQERNKRLARILIRI 166


>gi|119509079|ref|ZP_01628230.1| type II restriction enzyme, methylase subunit [Nodularia spumigena
           CCY9414]
 gi|119466245|gb|EAW47131.1| type II restriction enzyme, methylase subunit [Nodularia spumigena
           CCY9414]
          Length = 1018

 Score = 69.6 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 89/523 (17%), Positives = 150/523 (28%), Gaps = 132/523 (25%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         +    L F     +L      A Y  YN+  +           +
Sbjct: 236 IFLRICEDREIEIYEQLLN-LLKFQNIYQELGRLFINADYR-YNSGLFYFQQEKGREQPD 293

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +    +           ED+   + I +L      Y+    FS I +        ++  +
Sbjct: 294 DFTLNLT---------IEDYPLRAIIKKLYPPESPYE----FSVIPVE-------ILGQV 333

Query: 159 YEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +                EV +    + TP  +V       +       K     
Sbjct: 334 YEQFLGKIITLSASRQAVVEDKPEVRKAGGVYYTPSYIVDYIVKETIGKFLEGKKPEKVQ 393

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCG---------------------------SHHKIPP 238
             ++ DP CG+G FL  A   + D                             +  K   
Sbjct: 394 EMSIIDPACGSGSFLIVAYQFLLDWYLQQYLQNLKKYKNKIYQVTGNSWRLTSTERKRIL 453

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLS 283
           +   +G +++ +        +L++ LE +                  DL  NIQ G++L 
Sbjct: 454 LAHIYGIDIDQQAVETTKLSLLLKVLEGESVETITKQLEFLKERALPDLDNNIQCGNSLI 513

Query: 284 K------------DLFTGKR------------------FHYCLSNPPFGKKWEKDKD-AV 312
                        D  T +R                  F   + NPP+ +     +  A+
Sbjct: 514 DGEFYQNNQLDLLDEDTSERINIFDWETGFSAIMKRGGFDIVIGNPPYIRIQALKEWAAL 573

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           E E    +             G+    +    K        GR   +L         A  
Sbjct: 574 EVEFYQEKYV-------SAKKGNYDIYVIFVEKGLNLLTKDGRLGFILPHKFF---NAQY 623

Query: 373 GESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           GE  IR ++ EN  +  I+      +F      T L  LS +K           N +  +
Sbjct: 624 GEL-IRGFIAENKSLNQIIHFGDKQVFTDATTYTCLLFLSKQK-----------NKSFEF 671

Query: 432 TSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTF 473
             I +    R   N +  RQI  + Y+S E   F    D + F
Sbjct: 672 KKIHSLIDWRSDENKNIVRQIFPMSYISHEEWNFVMGRDDKWF 714


>gi|86152172|ref|ZP_01070384.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840957|gb|EAQ58207.1| hypothetical protein CJJ26094_0818 [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 43

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/41 (46%), Positives = 30/41 (73%)

Query: 632 GYEINFNRFFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           GYEI F+++FY Y P RKL++I+ EL+ +E ++  LL E+ 
Sbjct: 2   GYEILFSKYFYTYTPPRKLEEINNELEKLEKEVQDLLREIV 42


>gi|69244346|ref|ZP_00602814.1| type I restriction-modification system methylation subunit
           [Enterococcus faecium DO]
 gi|68196532|gb|EAN10959.1| type I restriction-modification system methylation subunit
           [Enterococcus faecium DO]
          Length = 134

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 16/109 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE 101
                           +    +     Y  S  Y  + L     +   +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQ 111


>gi|296125965|ref|YP_003633217.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
 gi|296017781|gb|ADG71018.1| N-6 DNA methylase [Brachyspira murdochii DSM 12563]
          Length = 676

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/417 (16%), Positives = 124/417 (29%), Gaps = 85/417 (20%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFY-NTSEYS-LSTLG--- 92
               +  +     ++       LA           +K      Y N S  S L  LG   
Sbjct: 214 LIFTKLYDEFSVISKDKATIYTLADIDEEEPFIEKIKKLKELKYSNDSRLSKLKKLGFYN 273

Query: 93  ---STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                  +  +           K +F     +STI+    +  L     +   ++L    
Sbjct: 274 YGYDDELKKAINDLFERAQKKWKNVFPA---NSTISL--SSSHLAVCVSSLQKVKLFNSN 328

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +   V+   +E+LI +   +       + TPR V+ +   +L          +P    ++
Sbjct: 329 LE--VIDEAFEYLINK---DSKGEKGQYFTPRHVIDMCVKML----------NPHKNESM 373

Query: 210 YDPTCGTGGFLT------DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            D   G+ GF                  +  +   +    G + +     V     LI  
Sbjct: 374 IDTAAGSCGFPVHTWFNMIGHLFDGQEPNDDEKEYVENIFGLDFDERAVRVARTLNLIAG 433

Query: 264 LESDPRRDLSKNIQQGSTLSKDL---------------------------FTGKRFHYCL 296
                  D   N+   +TL  D                            +    F   L
Sbjct: 434 -------DGETNVLHINTLDYDKKRWDEKRDSDYREAFNNLIKHSVNKEDYKLFDFCLLL 486

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           +NPPF  + ++ +  +  +++  + G+   G        +LF+             GGR 
Sbjct: 487 ANPPFAGEIKEHR--ILAKYEIAKKGKKSIGR------DILFIERNL----DFVRDGGRL 534

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATYLWILSN 412
           A+VL     FN         IR ++ E   I A+V L  + F   T   T +  L  
Sbjct: 535 ALVLPQGR-FNNATD---EYIRDFISEKARILAVVGLHGNTFKPHTGTKTSVIFLQK 587


>gi|148265621|ref|YP_001232327.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
 gi|146399121|gb|ABQ27754.1| N-6 DNA methylase [Geobacter uraniireducens Rf4]
          Length = 738

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/476 (14%), Positives = 130/476 (27%), Gaps = 122/476 (25%)

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGST----------NTRNNLESYIASFSDNAKAIF 115
            ++ E         F    +   + L                 N            + +F
Sbjct: 202 EMEDEVLANAGVDVFEELFKLIFTKLYDEMESGRDKKRHLIFRNYGDTETELKAKIQELF 261

Query: 116 EDF--DFSSTIARLEKAGLL-YKICKNFSGIELHPDTVPDRVMSN-IYEHLIRRFGSEVS 171
           +     +        K  L    +    S +E       +  + +  +E+LI +      
Sbjct: 262 DKARGKWEGVFPDGAKIDLTPSHLAVCVSSLEGVKLFNSNLDVVDEAFEYLINK---SSK 318

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---- 227
                + TPR V+ +   +L          +P    ++ D   G+ GF    + HV    
Sbjct: 319 GEKGQYFTPRYVIDMCVKML----------NPQEHESIIDTAAGSCGFPVHTIFHVWHQI 368

Query: 228 --------------ADCGSHHKIPPILVPHGQELEPETHAVCVA-GMLIRRLESDPRRDL 272
                                           + + +   V     ++    +++     
Sbjct: 369 RRDLGLPISDHFTTEQRTPRETDYVQDKVFAIDFDEKAVRVGRTLNLIAGDGQTNVLHLN 428

Query: 273 SKNIQQGSTLSKDLFT----------------------GKRFHYCLSNPPFGKKWEK--- 307
           + + ++    +KD                            F   ++NPPF    ++   
Sbjct: 429 TLDYERWDEKTKDQNWTDIYSEGWKKLRKQRAAKEQDRDFSFDILMANPPFAGDIKETRI 488

Query: 308 ------------------DKDAVEKEHKNGELGRFG-------PGLPKISDGSM------ 336
                             D++    E     +  F          + K++DGS       
Sbjct: 489 LAKYELARTVSLDKISKVDENDKNIEDATQRVPTFPECLRASFDTIYKMADGSFRKVKIK 548

Query: 337 ---------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                    LF+    + ++     GGR AIVL      N    S +  IR +L ++  I
Sbjct: 549 DQNNVGRDILFIERNLSFIKP----GGRMAIVLPQGRFNN----SSDKYIREYLADHCRI 600

Query: 388 EAIVALPTDLFF-RTNIATYLWILSN--RKTEERRGKVQLINATDLWTSIRNEGKK 440
            A+V L  ++F   T   T +  +     K   R     +  AT    S  N G K
Sbjct: 601 LAVVGLHGNVFKPHTGTKTSVIFVQKWDDKLCPRVDDYHIFFATMKEPSKDNSGDK 656


>gi|303237597|ref|ZP_07324159.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
 gi|302482230|gb|EFL45263.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
          Length = 681

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/462 (14%), Positives = 145/462 (31%), Gaps = 91/462 (19%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           + TL +T T  N+       S   K +     F++ +  L                  + 
Sbjct: 293 IRTLQNTLTAENVNKVENGESQ-LKRV-----FTNIVDDLG---------------IYYK 331

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +       ++  +    G    +  +  +TP  V  L   L     D+          
Sbjct: 332 IGLTTDFTGKLFNEMYGWLGFSQDKLNDVVLTPSYVATLLVKLARVNKDS---------- 381

Query: 208 TLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCV 256
            ++D   G+ G L  AMN +            +              G EL P  + + +
Sbjct: 382 YVWDFATGSAGLLVAAMNEMLVDAKNNIDSPNELAKKEARIKAEQLLGIELLPSVYMLAI 441

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++         D S NI    +L        ++ Y                   K  
Sbjct: 442 LNMILMG-------DGSSNILNKDSLKD---FDGKYGY------------------GKPK 473

Query: 317 KNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +      F    P  S G+ M F+    + ++      G AAI++ SS    G   + E 
Sbjct: 474 EQFPADAFVLNPPYSSLGNGMNFVEKALSMMQR-----GYAAIIIQSSA---GSGRATEY 525

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             R  +L+ + + A + +P DLF   +++ T +++    +  ++   V+ I+ ++   + 
Sbjct: 526 NKR--ILKRNTLLASIKMPIDLFIGKSSVQTNIYVFRINEAHKKDDVVKFIDFSNDGYTR 583

Query: 435 RNEGKKRRIIND-----DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
            N  K    + D     ++  +I+++    +    S++       Y    +       + 
Sbjct: 584 TNRKKASVNLKDTDHAKERYEEIVNLVRFGK----SKLNILTEKEYYEGTIDPNSGADWN 639

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                  +       + +S        ++LK    +    G 
Sbjct: 640 QTAPIDTKPTLADFKKTVSDYLAWEVSNLLKQKANEEDSLGK 681


>gi|260558487|ref|ZP_05830683.1| type I restriction-modification system methylation subunit
           [Enterococcus faecium C68]
 gi|260075661|gb|EEW63967.1| type I restriction-modification system methylation subunit
           [Enterococcus faecium C68]
          Length = 134

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 28/109 (25%), Gaps = 16/109 (14%)

Query: 9   ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY----- 59
           A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3   AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 60  ------LAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE 101
                           +    +     Y  S  Y  + L     +   +
Sbjct: 63  QTMLYRELLSDEESKEDLIATIVDILGYAISPEYLFNVLADQAKQATFQ 111


>gi|134301999|ref|YP_001121967.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049776|gb|ABO46847.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 423

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/415 (16%), Positives = 110/415 (26%), Gaps = 102/415 (24%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSH------------------------------ 233
                + DP  G+GGFL  A   V D                                  
Sbjct: 8   KQNELICDPCAGSGGFLIRAFEIVKDKIDEKYIRLKKLKQREVFGENLENIDDEKLKAKY 67

Query: 234 --------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                          +        G +  P    V    M++         D    I   
Sbjct: 68  EQVINELNEKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG-------DGHNGIHHN 120

Query: 280 STLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-------------------- 318
             L   +      F   L+NPPFG    KD   V +E K                     
Sbjct: 121 DGLLNVNGIFRNCFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEE 180

Query: 319 --------GELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                   G+  R      +IS    +LF+    + L+     GGR  IVL    L +  
Sbjct: 181 LKQVTDNFGKPIRSLYKTGEISGATEVLFVERCLDLLK----AGGRMGIVLPEGVLNSSN 236

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQLINA 427
                 + R +      I  IV+LP DLF  +   + T L  L              +  
Sbjct: 237 LQ----KAREYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKK----------FTVEE 282

Query: 428 TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
            + + +++ + +K        +   +   +  E      +   R     +        + 
Sbjct: 283 QEQYETVKTQAEKEAEQKYQPQLLEIQQKIDFEKSIKQHITKLRKALKTK-TAKNKENLQ 341

Query: 488 FILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
             LD+T +   E     ++     +       +   Q I      E  + E  K+
Sbjct: 342 LTLDETIVEHTEYKKKVKQYKAQLKELEAKQQEEAKQLIKQKFDYEIPIAEIEKA 396


>gi|332686989|ref|YP_004456763.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
 gi|332370998|dbj|BAK21954.1| type I restriction-modification system, DNA-methyltransferase
           subunit M [Melissococcus plutonius ATCC 35311]
          Length = 208

 Score = 69.2 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 50/184 (27%), Gaps = 21/184 (11%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73
           W       G    T +   I      + L          V   E +      +    +  
Sbjct: 12  WAMLNQTRGQIGLTAYKDYIFGILFYKYLSEKATHWLEGVLRGETWEQVYAQDS-ARALE 70

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNN------LESYIASFSD--------NAKAIFEDFD 119
            +     Y                 +      +      F+         + + IF+   
Sbjct: 71  YMKKNLGYGIQPNDFFVDWKKAIDEDRFNIGMMTDTFGHFNQQIAFEAKGDFEGIFDGMR 130

Query: 120 FSST---IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           F S    +    +A ++  + +  S  E          +S+IYE+L+ +F   ++     
Sbjct: 131 FDSADLGVNAQARAKVMISMIELLSSPEFDFSNGK-DTVSDIYEYLLAQFAMVLASDMGK 189

Query: 177 FMTP 180
           + TP
Sbjct: 190 YYTP 193


>gi|291531338|emb|CBK96923.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum 70/3]
          Length = 685

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/342 (16%), Positives = 119/342 (34%), Gaps = 77/342 (22%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS-------EGAEDFMTPRDVVHLATALLL 192
           FS I           ++  +  ++  F    +       +  +  +TP  V  L   L  
Sbjct: 322 FSKIVDDLGIYYKIGITTDFTGML--FNEMYNWLGFTQDKLNDVVLTPSYVARLLVKLAR 379

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILV 241
              D+           ++D   G+ G L  AMN +            +            
Sbjct: 380 VDKDS----------YVWDFATGSAGLLVAAMNEMIDDAKEKISSPEEYQEKVAKIKATQ 429

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             G E+ P+ + + +  M++         D S NI    +L               N  F
Sbjct: 430 LLGLEILPQIYMLAILNMILMG-------DGSSNILNQDSLKN----------FDGNYGF 472

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVL 360
               +                 F    P  +DG+ M+F+    + +       G AAI++
Sbjct: 473 SSTKKNFPATA-----------FVLNPPYSADGNGMIFVEKALSMM-----ENGYAAIII 516

Query: 361 SSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418
            +S      AGSG++ +  + +L++  + A + +P DLF   +++ T +++    +    
Sbjct: 517 QNS------AGSGKAVKYNKEILKHSTLLASIKMPIDLFVGKSSVQTNIYVFKVGEPHHA 570

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIIND-----DQRRQILDI 455
           +  V+ I+ ++   +  N  K    + D     ++ ++I DI
Sbjct: 571 KNTVKFIDFSNDGYTRTNRKKASVNLRDTDHAKERYQEIADI 612


>gi|300905269|ref|ZP_07123041.1| N-6 DNA Methylase [Escherichia coli MS 84-1]
 gi|301305093|ref|ZP_07211193.1| N-6 DNA Methylase [Escherichia coli MS 124-1]
 gi|300402853|gb|EFJ86391.1| N-6 DNA Methylase [Escherichia coli MS 84-1]
 gi|300839598|gb|EFK67358.1| N-6 DNA Methylase [Escherichia coli MS 124-1]
 gi|315255852|gb|EFU35820.1| N-6 DNA Methylase [Escherichia coli MS 85-1]
          Length = 715

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 81/279 (29%), Gaps = 42/279 (15%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE 101
           R     +         +           + +K A   F N   Y  +S  GS N   + E
Sbjct: 209 RFRDVFD---------WQYVESHGDKAVAQIKAAFEEFKNHENYVVISDDGSRNPIFSKE 259

Query: 102 SYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +++  S + N + + E       +   +            +        V   ++  +++
Sbjct: 260 THLRLSVAKNYQDLLEAIQNLGPVKTND---------GKIAKEHGTLADVSGDLLGRVFD 310

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTG 217
             +R        G   ++TP  V      + +   D   +    +        DPTCG+ 
Sbjct: 311 VFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSF 369

Query: 218 GFLTDAMNHVADCGS------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           GF + A++ +                   +        G +  P    +    M ++   
Sbjct: 370 GFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAP 429

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
                         ++L+ +      F    +NPPFG  
Sbjct: 430 KAQIFYT------DNSLTTNALKPNSFDLICTNPPFGTP 462



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 31/151 (20%)

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385
           D ++LF+      L+     GGR  IVL    L      SG+  +R +++ + D      
Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 624

Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429
                +++A+++LP+D F    T   T +  L  R            E +  V +  A  
Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 684

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           L   ++N  +       +   +I+ +Y   E
Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSVYKRGE 715


>gi|313892837|ref|ZP_07826417.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442620|gb|EFR61032.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 166

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 13/129 (10%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
             GG  A ++    LF   +      +R+ ++EN  + AI+++P+ +F     ++T + I
Sbjct: 2   KKGGTCACIVPDGVLF--GSSKAHVALRKEIIENHHLRAIISMPSGVFKPYAGVSTAIMI 59

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGK 463
            +          V   +   +     +   KR+ I D+    I+D +        R+  +
Sbjct: 60  FTKT-QAGGTNHVWFYD---MKADGFSLDDKRQPIEDNDIADIIDRFEHIDSESKRKRTE 115

Query: 464 FSRMLDYRT 472
            S ++  + 
Sbjct: 116 QSFLVPKQE 124


>gi|159898715|ref|YP_001544962.1| superfamily II DNA/RNA helicase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891754|gb|ABX04834.1| DNA or RNA helicase of superfamily II [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1021

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 95/329 (28%), Gaps = 41/329 (12%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                 LE  IA+    A   F    F      L      YK  +N +            
Sbjct: 235 NAIAAELEKVIAALPKRA---FSRDKF------LASLDYFYKAIENSARTISDYSEKSTF 285

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDP 212
            ++ +YE   + + +++++      TP  +V      +       F  S       + DP
Sbjct: 286 -LNTVYEQFFQGYSTDIADTHGIVYTPAPIVRWMVTSVEQLLRDQFDSSLSDKGVHVLDP 344

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             GTG F+ + +N + +    HK       H  EL    + +    +     +       
Sbjct: 345 CVGTGTFMLEILNQLQNSTLEHKY--RHELHCNELLLLPYYIAAQNIEHEFYDRTQNYAP 402

Query: 273 SKNIQQGSTLSKD------------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            + +     L  +                            + NPP+    + + D  + 
Sbjct: 403 FEGLCFADNLEMEANKRQASMFVPENAQRVQQQQDAPIFVIIGNPPYNVGQQNENDNNKN 462

Query: 315 EHKNGELGRFGPGLPKISDGSM------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                   R      K S  S+      ++        +   +  G  A V + S +   
Sbjct: 463 RKYPHIDARIRQTYAKSSKASLQTKLYDMYSRFFRWATDRLGDNDGVIAYVSNGSFV--- 519

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDL 397
                   +R+ LL++     ++ L  ++
Sbjct: 520 -EQIAFDGMRKELLKDFTSIYVLDLGGNV 547


>gi|294669729|ref|ZP_06734795.1| hypothetical protein NEIELOOT_01629 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308295|gb|EFE49538.1| hypothetical protein NEIELOOT_01629 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 316

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 109/346 (31%), Gaps = 84/346 (24%)

Query: 120 FSSTIARLEKAG-LLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            +  I +++     L ++           +   +       ++  +    G    +  + 
Sbjct: 11  LTDNINKVKDGESQLKRVFGKIVDDLGIYYKIGLTTDFTGKLFNEMYSWLGFSQDKLNDV 70

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--------- 227
            +TP  V  L   L     D+           ++D   G+ G L  AMN +         
Sbjct: 71  VLTPAYVATLLAKLARVNKDS----------YVWDFATGSAGLLVAAMNEMLNDAKNSIT 120

Query: 228 --ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK- 284
              +              G EL    + + +  M++         D S NI    +L+  
Sbjct: 121 SPEELRRKEVQIKAEQLLGLELLSSIYMLAILNMILMG-------DGSANILNKDSLADF 173

Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                  D          + NPP+                               +G M+
Sbjct: 174 NGKYGFGDTDKNFPADAFILNPPYSA---------------------------KGNG-MV 205

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR---RWLLENDLIEAIVALP 394
           F+      +       G AA+++ +S         G  + R   R +L+N+ + A + +P
Sbjct: 206 FVEKALGMMNK-----GYAAVIIQNSA--------GSGKARDNNREILKNNTLLASIKMP 252

Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            DLF   +++ T +++    +  + +  V+ I+ ++   +  N  K
Sbjct: 253 IDLFIGKSSVQTNIYVFKVGEPHDAKSPVRFIDFSNDGYTRTNRKK 298


>gi|167767485|ref|ZP_02439538.1| hypothetical protein CLOSS21_02004 [Clostridium sp. SS2/1]
 gi|167710777|gb|EDS21356.1| hypothetical protein CLOSS21_02004 [Clostridium sp. SS2/1]
 gi|291558536|emb|CBL37336.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SSC/2]
          Length = 878

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 130/422 (30%), Gaps = 60/422 (14%)

Query: 49  EPTRSAVREKYLAFG-GSNIDLESFVKVAGYSFYNTSEYSL-STLGSTNTRNNLESYIAS 106
           E     +           NI+ +    +   + +  S   + S +       ++   + S
Sbjct: 157 EEFEKGLLAAKKYLKSKKNINGQDLNNITSITMHVISALIINSKIRPDEKVPDIFDLLTS 216

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI--- 163
            S           FS+ +       LL +I KN +   ++  +V   ++   YE  +   
Sbjct: 217 LSQTYIE-----YFSNKLMFKYGKDLLSEIYKNLN-CSINYQSVDHELLGYFYESTLLQL 270

Query: 164 -RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
             +    +      + TPR +     + +       F+  P   R + D TCG+G  L  
Sbjct: 271 SEKKAENIRREFGIYYTPRILSQEIVSCI------PFESIPIDERYVLDGTCGSGSLLLS 324

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN---IQQG 279
           A   + D  S+ K       +   +  E + +      + RL          N   I  G
Sbjct: 325 ACKRLEDLASYEKTEFDRHDYLTRMI-EGYDIDKFASEVARLSLLLYSLPYGNKWDIHAG 383

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             L       K     L NPP+ +     +   +                        FL
Sbjct: 384 DLLRISKSKIKEPFVILGNPPYEEVRGNSQKTQKAT---------------------AFL 422

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                 L       G   I+L  S L N  +       R+ LL    I  +  LP  +F 
Sbjct: 423 DKYLEWLHDE----GFIGIILPESFLQNDSSILQ----RKKLLNEFDIMELWMLPGQIFE 474

Query: 400 RTNIATYLWILSNRKTE---ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
             N +T + I   +KT+     + KV + N   +         K R  + +    I + +
Sbjct: 475 N-NCSTIVLIAQKKKTQCECLTKIKVLVRNKESIRDYF-----KHRRWDFEFFINIQNSW 528

Query: 457 VS 458
            +
Sbjct: 529 KN 530


>gi|237752124|ref|ZP_04582604.1| type II restriction-modification enzyme [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229376366|gb|EEO26457.1| type II restriction-modification enzyme [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 894

 Score = 68.8 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 117/397 (29%), Gaps = 48/397 (12%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             L ++   LE T             S  DL +   K+         +  ++ +   +  
Sbjct: 99  LFLCKITDELENTNDLQFSWRGNMQDSAFDLVDRLQKLYKTGMEKYLKQKITYVSKNDID 158

Query: 98  NNLESYIASFSD--NAKAIF--------EDFDFSSTIAR---LEKAGLLYKICKNFSGIE 144
               + I + S       IF         DF+F     +    +   +L  I        
Sbjct: 159 KAFGASIKAISPRKAIYEIFTRLKYFSNGDFNFIEVYNKELFYKNFKILLPIVLKLEDTA 218

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              +   +  + + +E  I        +    + TP  +V+     L    D+       
Sbjct: 219 FTKNADSNI-LGDYFESYIHDM----PQQEGQYFTPVPLVNFIIHSLPVLKDS------- 266

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               + D +CG G FLT            +K        GQ+ +P    +          
Sbjct: 267 ---KVLDFSCGAGHFLTQYAEI-------NKPYQKAKFLGQDKDPRLAKIAK-----IAK 311

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +         I    +L         F+  +SNPP+        + +  E +       
Sbjct: 312 IASFMHQTKMEILANDSLEC-GIEDSSFNVLISNPPYSVD--GFLNVLSDETRRSYELFN 368

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                + +D    F      K        G  ++VL ++ L N +        R  LL +
Sbjct: 369 DNLNIESNDTIQCF---FIEKASKALQSNGLLSLVLPNTILENDKGIPLNKPTREILLRD 425

Query: 385 DLIEAIVALPTDLFFRTNIATYLWI-LSNRKTEERRG 420
             I AI  L +  FF+TN +  +   L  +K    + 
Sbjct: 426 FYIIAICELGSATFFKTNTSPIVLFALRKQKNTRAQT 462


>gi|218550410|ref|YP_002384201.1| type I restriction-modification system methyltransferase subunit
           [Escherichia fergusonii ATCC 35469]
 gi|218357951|emb|CAQ90595.1| putative type I restriction-modification system methyltransferase
           subunit [Escherichia fergusonii ATCC 35469]
          Length = 715

 Score = 68.5 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 81/279 (29%), Gaps = 42/279 (15%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLE 101
           R     +         +           + +K A   F N   Y  +S  GS N   + E
Sbjct: 209 RFRDVFD---------WQYVESHGDKAVAQIKAAFEEFKNHENYVVISDDGSRNPIFSKE 259

Query: 102 SYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           +++  S + N + + E       +   +            +        V   ++  +++
Sbjct: 260 THLRLSVAKNYQDLLEAIQNLGPVKTND---------GKIAKEHGTLADVSGDLLGRVFD 310

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTG 217
             +R        G   ++TP  V      + +   D   +    +        DPTCG+ 
Sbjct: 311 VFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSF 369

Query: 218 GFLTDAMNHVADCGS------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           GF + A++ +                   +        G +  P    +    M ++   
Sbjct: 370 GFGSVALSQIDKWIDFKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAP 429

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
                         ++L+ +      F    +NPPFG  
Sbjct: 430 KAQIFYT------DNSLTTNALKPNSFDLICTNPPFGTP 462



 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%)

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385
           D ++LF+      L+     GGR  IVL    L      SG+  +R +++ + D      
Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 624

Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429
                +++A+++LP+D F    T   T +  L  R            E +  V +  A  
Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPKQPEQFLPEPQTDVFMAVAET 684

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           L   ++N  +       +   +I+  Y   E
Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 715


>gi|256855107|ref|ZP_05560468.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8]
 gi|256709620|gb|EEU24667.1| type IIS restriction enzyme M protein [Enterococcus faecalis T8]
          Length = 682

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 138/416 (33%), Gaps = 89/416 (21%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSE-------YSLSTLGSTNTRNNLESYIASFS 108
           +E   +    +      V     SF N  +         + TL +T T +N+   +   S
Sbjct: 255 KEDLKSSMEEDNRDGDIVIRKVNSFLNEKKIPKAKKDLIIRTLKNTLTTDNINKPVNGES 314

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              K +F           ++  G+ YKI             +       ++  +    G 
Sbjct: 315 Q-LKRVFSKI--------VDDLGIYYKI------------GLNTDFTGKLFNEMYSWLGF 353

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +  +  +TP  V  L   L     D+           ++D   G+ G L  AMN + 
Sbjct: 354 TQDKLNDVVLTPSYVATLLVKLARVDKDS----------YVWDFATGSAGLLVSAMNEML 403

Query: 229 -----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                      +              G E+    + + V  M++         D S NI 
Sbjct: 404 NDAKAKITSPDELYKKEAEIKANQLLGLEILSSVYMLAVLNMIMMG-------DGSSNII 456

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-M 336
              +L++                F  K+        K  +      F    P  ++G+ M
Sbjct: 457 NEDSLTQ----------------FNGKY-----GYGKTEEKFPATAFVLNPPYSAEGNGM 495

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           +F+    + ++      G A++++  S           SEI + +L+++ + A + +P D
Sbjct: 496 VFVKRALSMMDK-----GYASVIIQGSA-----GSGKASEINKEILKSNRLLASIKMPID 545

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           LF   +++ TY+++    +  E    VQ I+ T+   +  N  K    + D    +
Sbjct: 546 LFVGKSSVQTYIYVFRVGEAHENDYTVQFIDFTNDGYTRSNRKKSSNNLRDTDHAK 601


>gi|241758670|ref|ZP_04756784.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114]
 gi|241321181|gb|EER57377.1| type IIS restriction enzyme M protein [Neisseria flavescens SK114]
          Length = 692

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 105/304 (34%), Gaps = 61/304 (20%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  +    G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 351 GKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLAKLARVNKDS----------YVWDFATG 400

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  AMN +            +              G EL    + + +  M++   
Sbjct: 401 SAGLLVAAMNEMLIDAKNSISSPEELRKKEAQIKAGQLLGLELLSNVYMLAILNMILMG- 459

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 D S NI    +L+       ++ +  ++  F                      F
Sbjct: 460 ------DGSSNILNKDSLTD---FDGKYGFGKTDHKFPADA------------------F 492

Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               P  + G+ M F+    + +E      G AAI++ +S    G   + E   R  +L+
Sbjct: 493 ILNPPYSASGNGMNFVERALSMMEK-----GYAAIIIQNSA---GSGKAREINRR--ILQ 542

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           N+ + A + +P DLF   +++ T +++    +  E+   V+ I+ +D   +  N  K   
Sbjct: 543 NNTLFASIKMPLDLFIGKSSVQTNIYVFKVGEPHEKDETVKFIDFSDDGYTRTNRKKASN 602

Query: 443 IIND 446
            + D
Sbjct: 603 NLKD 606


>gi|72080630|ref|YP_287688.1| putative type II DNA modification enzyme: methyltransferase
           [Mycoplasma hyopneumoniae 7448]
 gi|71913754|gb|AAZ53665.1| putative type II DNA modification enzyme: methyltransferase
           [Mycoplasma hyopneumoniae 7448]
          Length = 669

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 116/360 (32%), Gaps = 73/360 (20%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           E+ I   S + K   E  +         K  +  K+  +        + +       ++ 
Sbjct: 282 ETLINILSPSLKE--ERLNTPENGESRIKR-IFGKVVDDIG--YFFKNGLEIDFAGKLFN 336

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            +    G    +  +  +TP  V  L   L     ++           ++D   G+ G L
Sbjct: 337 EMYSWLGFSEDKKNDVVLTPPYVAKLLAKLARVNQNS----------YVWDFATGSAGLL 386

Query: 221 TDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
             AMN +            +  +           G E+ P+ H + +  M++        
Sbjct: 387 VAAMNEMIADAEAKSKSAKELEAKKIKIKTEQLLGIEILPKIHMLAILNMILMG------ 440

Query: 270 RDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            D S N+    +L   D       +  + NPP+                           
Sbjct: 441 -DGSSNLLHKDSLKDFDNKEKFPANAFVLNPPYSAPGNG--------------------- 478

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                  M F+    + ++      G  AI++ SS            +    +L+N+ + 
Sbjct: 479 -------MNFVEKALSMMK-----NGYGAIIIQSSA-----GSGKAKDFNTEILKNNTLL 521

Query: 389 AIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           A + +P DLF   +++ T++++    ++  + G V+ I+ ++      N  K    + D+
Sbjct: 522 ASIKMPIDLFLGKSSVQTHIYVFQVGQSHNKEGLVKFIDFSNDGYKRTNRKKAAINLVDN 581


>gi|324016950|gb|EGB86169.1| N-6 DNA Methylase [Escherichia coli MS 117-3]
          Length = 715

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 64/324 (19%)

Query: 38  FTLLRRLECALEPTRSAV----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
             +  RL    +     V    ++K         ++   + +  +  ++  + +      
Sbjct: 146 MRVYTRLMQRFDAFHENVYRVTKDKVNDKNDIIEEVAKLLFLETFRLHHDEDLTFKDDEG 205

Query: 94  TNTR-------NNLESYIASFSDNAKAIFEDFD-----------------FSSTIA-RLE 128
              R         +ES+        KA FE+F                  FS     RL 
Sbjct: 206 NTLRFRDVFNWQYVESHGDKAVAQIKAAFEEFKSHENYVVISDDGSRNPIFSKETHLRLS 265

Query: 129 KAGLLYKICK-------------NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            A     + +               +        V   ++  +++  +R        G  
Sbjct: 266 VAKNYQDLLEAIQNLGPVKTNDGKIAKEHGTLADVSGDLLGRVFDVFLRANFESKG-GLG 324

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTGGFLTDAMNHVADCGS 232
            ++TP  V      + +   D   +    +        DPTCG+ GF + A++ +     
Sbjct: 325 VYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSFGFGSVALSQIDKWID 384

Query: 233 ------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                         +        G +  P    +    M ++                 +
Sbjct: 385 FKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAPKAQIFYT------DN 438

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKK 304
           +L+ +      F    +NPPFG  
Sbjct: 439 SLTTNALKPNSFDLICTNPPFGTP 462



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 31/148 (20%)

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385
           D ++LF+      L+     GGR  IVL    L      SG+  +R +++   D      
Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGRKDEKTGEF 624

Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429
                +++A+++LP+D F    T   T +  L  R            E +  V +  A  
Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 684

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYV 457
           L   ++N  +       +   +I+  Y 
Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSAYK 712


>gi|168210993|ref|ZP_02636618.1| type IIS restriction enzyme M protein [Clostridium perfringens B
           str. ATCC 3626]
 gi|170710963|gb|EDT23145.1| type IIS restriction enzyme M protein [Clostridium perfringens B
           str. ATCC 3626]
          Length = 683

 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 128/376 (34%), Gaps = 82/376 (21%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
            TL +T   +N+       S   K +F           ++  G+ YKI            
Sbjct: 296 RTLKNTLLTDNINKVTNGESQ-LKRVFSKI--------VDDLGIYYKI------------ 334

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +       ++  +    G    +  +  +TP  V  L   L     D+           
Sbjct: 335 GLTTDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLVKLARVNMDS----------Y 384

Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           ++D   G+ G L  AMN +            +    +         G E+    + + + 
Sbjct: 385 VWDFATGSAGLLVAAMNEMLIDAKEKIKSPEELEQKNIKIKAEQLLGLEVLSSIYMLAIL 444

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++         D S NI    +L+              N  FGK  +K          
Sbjct: 445 NMILMG-------DGSSNILNRDSLND----------FNGNYGFGKTEKKFPATA----- 482

Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 F    P  +DG+ M+F+    + +     G G A+I++ +S    G   + E  
Sbjct: 483 ------FILNPPYSADGNGMVFVEKALSMM-----GKGYASIIIQNSA---GSGKAIEYN 528

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            R  +L+ + + A + +P DLF   +++ T +++    +  ++   V+ I+ ++   +  
Sbjct: 529 KR--ILKKNTLLASIKMPIDLFVGKSSVQTNIYVFRVAEPHQKDDIVKFIDFSNDGYTRT 586

Query: 436 NEGKKRRIINDDQRRQ 451
           N  K    + D  R +
Sbjct: 587 NRKKASNNLKDTDRAK 602


>gi|307312925|ref|ZP_07592553.1| N-6 DNA methylase [Escherichia coli W]
 gi|306907093|gb|EFN37600.1| N-6 DNA methylase [Escherichia coli W]
 gi|315063606|gb|ADT77933.1| putative type I restriction-modification system methyltransferase
           subunit [Escherichia coli W]
 gi|320200586|gb|EFW75172.1| N-6 DNA methylase [Escherichia coli EC4100B]
 gi|323380313|gb|ADX52581.1| N-6 DNA methylase [Escherichia coli KO11]
          Length = 715

 Score = 68.1 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 64/324 (19%)

Query: 38  FTLLRRLECALEPTRSAV----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
             +  RL    +     V    ++K         ++   + +  +  ++  + +      
Sbjct: 146 MRVYTRLMQRFDAFHENVYRVTKDKVNDKNDIIEEVAKLLFLETFRLHHDEDLTFKDDEG 205

Query: 94  TNTR-------NNLESYIASFSDNAKAIFEDFD-----------------FSSTIA-RLE 128
              R         +ES+        KA FE+F                  FS     RL 
Sbjct: 206 NTLRFRDVFNWQYVESHGDKAVAQIKAAFEEFKSHENYVVISDDGSRNPIFSKETHLRLS 265

Query: 129 KAGLLYKICK-------------NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            A     + +               +        V   ++  +++  +R        G  
Sbjct: 266 VAKNYQDLLEAIQNLGPVKTNDGKIAKEHGTLADVSGDLLGRVFDVFLRANFESKG-GLG 324

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPTCGTGGFLTDAMNHVADCGS 232
            ++TP  V      + +   D   +    +        DPTCG+ GF + A++ +     
Sbjct: 325 VYLTPNPVKQAMLEIAMHDIDDDDEMRSRLANGDFRFCDPTCGSFGFGSVALSQIDKWID 384

Query: 233 ------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                         +        G +  P    +    M ++                 +
Sbjct: 385 FKLVLADDKKESLKQKLRDCAFTGADAAPRMVMLARVNMALQGAPKAQIFYT------DN 438

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKK 304
           +L+ +      F    +NPPFG  
Sbjct: 439 SLTTNALKPNSFDLICTNPPFGTP 462



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%)

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385
           D ++LF+      L+     GGR  IVL    L      SG+  +R +++ + D      
Sbjct: 573 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 624

Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429
                +++A+++LP+D F    T   T +  L  R            E +  V +  A  
Sbjct: 625 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 684

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           L   ++N  +       +   +I+  Y   E
Sbjct: 685 LGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 715


>gi|308270913|emb|CBX27523.1| hypothetical protein N47_H23450 [uncultured Desulfobacterium sp.]
          Length = 1001

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 124/421 (29%), Gaps = 109/421 (25%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS---TIARLEKAGLLYKIC 137
           YN+  +  +        +NL  ++       K IF +  +       + L  A +L ++ 
Sbjct: 276 YNSGLFHFTKEKDRENYDNLTPFLQIDDKPLKDIFNNLYYPESPYEFSVLS-ADILGQVY 334

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + F G  +         +             EV +    + TP  +V       +     
Sbjct: 335 EKFLGKVIRLTAGHQAKIEE---------KPEVRKAGGVYYTPGYIVDYIVKNTVGKLVE 385

Query: 198 LFKESPGMIRT---LYDPTCGTGGFLTDAMNHVADCGSHHKIPP---------------- 238
             K  P    +   + DP CG+G FL  A   + D      I                  
Sbjct: 386 GKKPGPRGGVSHLKILDPACGSGSFLIGAYQFLLDWHRDEYINDGPENWSKGKTPRIYQS 445

Query: 239 ----------------ILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------ 270
                               +G +++ +   V    +L++ LE +  +            
Sbjct: 446 RKGEWRLTTEERKRILTNNIYGVDIDHQAVEVTKLSLLLKVLEGEDEQSIGKQMLMFQKR 505

Query: 271 ---DLSKNIQQGSTLSKDLF------------------------------TGKRFHYCLS 297
              DLS NI+ G++L    F                                  F   + 
Sbjct: 506 VLPDLSNNIKCGNSLIGPDFYEHQPMSLLGEGEIFRVNAFDWNAEFAEIMKDGGFDAVIG 565

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPP+G +  + + +  +      + R                M+  ++        G   
Sbjct: 566 NPPWGAELSERELSYLRRTNKDIIVRMIDS-----------FMYFIHQSSQKVKTLGYFG 614

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           ++L    L+         ++RR+++ N  I+ I+ +  D+F + +  + + I  N     
Sbjct: 615 MILPDVLLYQIDNE----KLRRYIINNFRIKNILNM-GDVFDKVSRPSSILIFENSNPST 669

Query: 418 R 418
            
Sbjct: 670 Y 670


>gi|303258165|ref|ZP_07344173.1| type IIS restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
 gi|302859184|gb|EFL82267.1| type IIS restriction enzyme M protein [Burkholderiales bacterium
           1_1_47]
          Length = 686

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 97/309 (31%), Gaps = 61/309 (19%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  +    G    +  +  +TP  V  L   L                  ++D   G
Sbjct: 345 GKLFNEMYGWLGFSQDKLNDVVLTPSYVAKLLVKLARVD----------RNSYVWDFATG 394

Query: 216 TGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  AMN +            +              G E+ P  + + +  M++   
Sbjct: 395 SAGLLVAAMNEMLIDAKNHITSPDELARKEATIRAEQLLGLEVLPSIYMLAILNMILMG- 453

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                 D S NI    +L  D      F       P                       F
Sbjct: 454 ------DGSSNILNKDSL-HDFDGKYGFGKITEKFPASA--------------------F 486

Query: 325 GPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               P  + G+ M+F+      +       G AAI++  S    G   + +   R  +L+
Sbjct: 487 VLNPPYSAAGNGMIFVEKALGMMNK-----GYAAIIIQGSS---GNGKAVDYNRR--ILK 536

Query: 384 NDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
              + A + +P DLF   +N+ TY+++    +  +    V+ I+ ++   +  N  K   
Sbjct: 537 KHTLLASIKMPIDLFIGKSNVQTYVYVFRVNEPHQADDTVKFIDFSNDGYTRTNRKKASV 596

Query: 443 IINDDQRRQ 451
            + D    +
Sbjct: 597 NLKDTDHAK 605


>gi|260061984|ref|YP_003195064.1| type II restriction enzyme, methylase subunit [Robiginitalea
           biformata HTCC2501]
 gi|88783546|gb|EAR14717.1| type II restriction enzyme, methylase subunit [Robiginitalea
           biformata HTCC2501]
          Length = 1006

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 66/467 (14%), Positives = 137/467 (29%), Gaps = 115/467 (24%)

Query: 38  FTLLRRLECALE---PTRSAVREKYLAFGGSNIDL-ESFVKVAGYSFYNTSEYSLSTLGS 93
           F  +   E  L     +   + +++        +    + +   Y  Y  S Y       
Sbjct: 235 FLFIFFAEDRLLLPPNSIRTILQQWTDLKDKYDEYFPLYERFQKYFGYLNSGY------- 287

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
              ++++ +Y     +    I +               LLY+  +N S  +   +   + 
Sbjct: 288 KGKKHDIFAYNGGLFEE-DEILDSITIDD--------NLLYEHTRNLSNYDFESEVSVNI 338

Query: 154 VMSNIYEHLIRRF--------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            + +I+EH +                      +    F TP+ +        +       
Sbjct: 339 -LGHIFEHSLTEIENIQAEIEGAEIDKSKTKRKKDGVFYTPKYITKYIVENTVGKLCEEK 397

Query: 200 KESPGMIR---------------------------TLYDPTCGTGGFLTDAMNHVADCGS 232
           K    +                             T+ DP CG+G FL  A+  +     
Sbjct: 398 KAELDITDEAYQPAKQRSRKRLQKLQDYRDWLLQLTICDPACGSGAFLNQALEFLIAEHR 457

Query: 233 HH------------------KIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLS 273
           +                            G ++  E+  +    + +R   +      LS
Sbjct: 458 YIDELSAKYNKDALILSDVENTILENNLFGVDINEESVEIAKLSLWLRTAQKGRKLTSLS 517

Query: 274 KNIQQGSTLSKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
            NI+ G++L  D                  F    F   + NPP+G K         +E 
Sbjct: 518 DNIKCGNSLIDDPKVAGDKAFNWQEEFPEVFEKGGFDVVIGNPPYGAKLNTSAINYFREV 577

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
               +G         S+   LF+    NKL  P         ++ ++ L N  A     E
Sbjct: 578 YKTVIG--------HSEAYYLFIDITINKLLQPDAL---LGFIIPNAWLSNKYA----KE 622

Query: 377 IRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKV 422
           +RR +L    + +++      +F   ++ T + +++ +   +   +V
Sbjct: 623 LRRLVLFETRMLSLINFNRQIIFEDASVETSI-VITKKVNPKPDDRV 668


>gi|260592072|ref|ZP_05857530.1| type IIS restriction enzyme M protein [Prevotella veroralis F0319]
 gi|260535950|gb|EEX18567.1| type IIS restriction enzyme M protein [Prevotella veroralis F0319]
          Length = 683

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 68/459 (14%), Positives = 144/459 (31%), Gaps = 85/459 (18%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           + TL +T T  N+       S   K +     F++ +  L                  + 
Sbjct: 295 IRTLQNTLTAENVNKVENGESQ-LKRV-----FTNIVDDLG---------------IYYK 333

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +       ++  +    G    +  +  +TP  V  L   L     D+          
Sbjct: 334 IGLTTDFTGKLFNEMYGWLGFSQDKLNDVVLTPSYVATLLVKLARVNKDS---------- 383

Query: 208 TLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCV 256
            ++D   G+ G L  AMN +            +              G EL P  + + +
Sbjct: 384 YVWDFATGSAGLLVAAMNEMLIDAKNNIDSPNELAIKEAHIKAEQLLGIELLPSVYMLAI 443

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             M++         D S NI    +L        ++ Y                   +  
Sbjct: 444 LNMILMG-------DGSSNILNKDSLKD---FDGKYGY------------------GRPK 475

Query: 317 KNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +      F    P  S G+ M F+    + ++      G AAI++ +S    G   + E 
Sbjct: 476 EQFPADAFVLNPPYSSLGNGMNFVEKALSMMQK-----GYAAIIIQNSA---GSGRATEY 527

Query: 376 EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
             R  +L+ + + A + +P DLF   +++ T +++    +  ++   V+ I+ ++   + 
Sbjct: 528 NKR--ILKRNTLLASIKMPIDLFIGKSSVQTNIYVFRVNEAHKKDDVVKFIDFSNDGYTR 585

Query: 435 RNEGKKRRII--NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
            N  K    +   D  + +  +++     GK S++       Y    +       +    
Sbjct: 586 TNRKKASVNLRDTDHAKERYEEVFNLVRFGK-SKLNFLTEKEYYEGTIDPNSGADWNQTA 644

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
               +       + +S        ++LK    +    G 
Sbjct: 645 PIDTKPTLADFKKTVSDYLAWEVSNLLKQKADEEDSLGK 683


>gi|164688713|ref|ZP_02212741.1| hypothetical protein CLOBAR_02360 [Clostridium bartlettii DSM
           16795]
 gi|164602189|gb|EDQ95654.1| hypothetical protein CLOBAR_02360 [Clostridium bartlettii DSM
           16795]
          Length = 658

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 97/332 (29%), Gaps = 75/332 (22%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    + TP  VV       +   D +    P     + D +CG G FL  A   +    
Sbjct: 21  KERGIYYTPYVVVKYILDNTIGKHDIVQNPYPK----ILDMSCGCGNFLIQAYTMLYKKF 76

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN---------------- 275
             +        +GQ+       +C   + +  +++      + N                
Sbjct: 77  YDNIDKLNQR-YGQDF------ICKEDIGLHIIKNCIFGVDTDNDALMILENELKKILKK 129

Query: 276 ------------------------------IQQGSTLSKDL---FTGKRFHYCLSNPPFG 302
                                         I  G +L  DL   F   +F Y + NPP+ 
Sbjct: 130 ELRETYKHKPLIRDDDLDEILDEEYLDKLNIFCGDSLKNDLSEVFGVDKFDYIIGNPPY- 188

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                 +  ++  +K      F        D    F   + + L      G         
Sbjct: 189 ----VGQKYLDNNYKKFLYKEFEEVYKNKGDLYFCFYKKILDLLRQDGKSGIITPRYFMQ 244

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGK 421
           SP            +R +L+ N  IE I+  L  +LF    +A+ + I  ++   + +  
Sbjct: 245 SP--------SGKYLRSYLVNNSQIEKIIDFLGANLFTGLGVASCIVIFGHKIETDNKNN 296

Query: 422 VQ-LINATDLWTSIRNEGKKRRIINDDQRRQI 452
              L    +   +I+        IN +  ++I
Sbjct: 297 CLELYKIKNENINIKKIANLEDYINKENFKKI 328


>gi|218891096|ref|YP_002439962.1| hypothetical protein PLES_23591 [Pseudomonas aeruginosa LESB58]
 gi|218771321|emb|CAW27086.1| hypothetical protein PLES_23591 [Pseudomonas aeruginosa LESB58]
          Length = 707

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 23/183 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI---RTL 209
            ++  +++  +R        G   ++TP  V      + +            +       
Sbjct: 297 DLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIQQDNSAMERLTAGAFRF 355

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH------------HKIPPILVPHGQELEPETHAVCVA 257
            DPTCG+ GF + A++H+     H             +        G +  P    +   
Sbjct: 356 CDPTCGSFGFGSVALSHIESVVDHLGGMSDAQKKALKQTLRDTAFTGADAAPRMVMLARV 415

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M ++                 ++L+   F    F    +NPPFG   +   D   KE K
Sbjct: 416 NMALQGAPKAKIFYT------DNSLTTKAFKANSFDLICTNPPFGT-PKFTSDKKGKESK 468

Query: 318 NGE 320
              
Sbjct: 469 ERY 471



 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 31/151 (20%)

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385
           D ++LF+      L      GGR  IVL    L      SG+  +R +++ + D      
Sbjct: 565 DPAVLFIDRCLQLLRP----GGRLLIVLPDGVL----CNSGDRYVREYIMGKKDEITGQF 616

Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429
                +++A+++LP D F    T   T +  L  R            E +G V +  A  
Sbjct: 617 VGGKAIVKAVLSLPADTFKLSGTGAKTSVLYLQKRHASNEHPEQFLPEPQGDVFMAVAET 676

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           L   ++N  +       +   +I+  Y   E
Sbjct: 677 LGYVVKNNIEDYSAGVPNDLDKIVGAYKRGE 707


>gi|323160769|gb|EFZ46704.1| type I restriction-modification system DNA methylase domain protein
           [Escherichia coli E128010]
          Length = 40

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 28/37 (75%)

Query: 623 EKDKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           EKD E+G VGYEINFNR+FYQY P R+L  ID E K 
Sbjct: 3   EKDGEVGIVGYEINFNRYFYQYVPPRELSVIDRETKS 39


>gi|90962803|ref|YP_536718.1| Type II restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
 gi|90821997|gb|ABE00635.1| Type II restriction-modification system methylation subunit
           [Lactobacillus salivarius UCC118]
 gi|300215417|gb|ADJ79830.1| Type II restriction-modification system methylation subunit
           [Lactobacillus salivarius CECT 5713]
          Length = 694

 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 91/305 (29%), Gaps = 69/305 (22%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E  +  +  +TPR V  L   L              M   ++D   G+GGFL  AM+ 
Sbjct: 372 SIENDKQNDVVLTPRYVTKLMVKL----------TRTDMNSYVWDTAMGSGGFLVSAMDE 421

Query: 227 V-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +                  +        G EL    + + V  M++    +   ++   +
Sbjct: 422 MFKDAKEKIQDKKKLEEKIEHIKKEQLLGVELLGNIYILAVLNMILMGDGASKMKNGDSH 481

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                            +  L NPP+    +                             
Sbjct: 482 KIYDD-------LEFPANVFLLNPPYSADGKG---------------------------- 506

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES-EIRRWLLENDLIEAIVALP 394
             F+    +K++               + L    AGSG      + +L+ + + A + +P
Sbjct: 507 FNFVAEAFSKMQKGY-----------GAILIQENAGSGTGLPYTKKILDYNTLVASIHMP 555

Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            DLF   +++ T +++    +    +  V  I+ +    S +N  K  + +N        
Sbjct: 556 NDLFNGKSSVQTAIYVFKVNEPHNVKKAVTFIDFSKDGYSRQNRKKSSQEVNLRDTDNAK 615

Query: 454 DIYVS 458
             Y  
Sbjct: 616 ARYQE 620


>gi|257126730|ref|YP_003164844.1| methyltransferase small [Leptotrichia buccalis C-1013-b]
 gi|257050669|gb|ACV39853.1| methyltransferase small [Leptotrichia buccalis C-1013-b]
          Length = 691

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 68/536 (12%), Positives = 151/536 (28%), Gaps = 56/536 (10%)

Query: 44  LECALEPTRSAVREKYL--AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           L   ++  +  V E Y            +   K +    Y      ++ +          
Sbjct: 87  LSKMIKELKLEVDEMYRLLKLNNDFEKNDILKKDSNLLTYGDLIVHMNKIYQKR-----N 141

Query: 102 SYIASFSDNAKAIFEDFDFSS-TIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNI 158
            Y+   +       +   F    +  L+K   +  + KN   S I  +     +   +  
Sbjct: 142 KYVHG-AFEINENIDKEKFEKYVLDTLDKESAILLVLKNAFISKIPYYLIEKEELTKNYK 200

Query: 159 -YEHLIRRFGSEVS----EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            YE L   F   +     +    F TP  +              L K+       + DP+
Sbjct: 201 KYEELYNNFFENIDNEIIKEKSQFFTPIAISQKLVD----DLKHLNKKFEKENIKILDPS 256

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-ELEPETHAVCVAGMLIRRLESDPRRDL 272
           CG G    + +  + +  S        +     +++ +    C   M     +++    +
Sbjct: 257 CGFGILTINLLEKIVEISSDSNKRINKIEVDMIDIDEKCIENCKIIMKEFLEKNNLNDLV 316

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             N   G+ L  +    +++ + + NPPF K  +++K   + E            + K  
Sbjct: 317 EVNYIIGNYL--NYEIKRKYDFIVQNPPFKKIKKEEKVKYDGE------------ITKYI 362

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +G          K     +  G    +   + L           +R++L  N  +   + 
Sbjct: 363 NGQANLYHLFIIKSLKLLDEKGILFTISPKNFLSGKYTE----NLRKFLFNNYSL-TRLH 417

Query: 393 L---PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN---EGKKRRI-IN 445
           L      +F        +  +  RK +  +      N +  +   R      +K  I ++
Sbjct: 418 LFDERKKIFKNIIQEICITQIEKRKHKNIK---ISYNGSKPFELDREILFLKRKNNILLS 474

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
              R +      +         +    F +   KV++       L      + +  +   
Sbjct: 475 PRNREE-----SNFIKSINEIFVKNNVFSFHPGKVVQFRVDKKNLSSEKFNKEKKQVPLL 529

Query: 506 KLSPLHQSFWL-DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
               L       + L     +     + E      +K+     L   + K      
Sbjct: 530 VPKHLKNERIEYEDLDKKKNKSISIFYNEETQNLFLKNKRYIILNKNSGKEEKKLI 585


>gi|329575570|gb|EGG57107.1| conserved domain protein [Enterococcus faecalis TX1467]
          Length = 113

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
          A L   ++  A++L      +++   +L     + L   L  T         E+Y     
Sbjct: 3  AELNQRLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDKLLQTVVTLADESLEEYDTPTK 62

Query: 65 SNIDLESFVKVAGYS 79
               +  +K     
Sbjct: 63 QTELYKELLKDEDSR 77


>gi|182624917|ref|ZP_02952696.1| type IIS restriction enzyme M protein [Clostridium perfringens D
           str. JGS1721]
 gi|177909923|gb|EDT72333.1| type IIS restriction enzyme M protein [Clostridium perfringens D
           str. JGS1721]
          Length = 683

 Score = 67.7 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 128/376 (34%), Gaps = 82/376 (21%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
            TL +T   +N+       S   K +F           ++  G+ YKI            
Sbjct: 296 RTLKNTLLTDNINKVTNGESQ-LKRVFSKI--------VDDLGIYYKI------------ 334

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            +       ++  +    G    +  +  +TP  V  L   L     D+           
Sbjct: 335 GLTTDFTGKLFNEMYSWLGFTQDKLNDVVLTPSYVATLLVKLARVNKDS----------Y 384

Query: 209 LYDPTCGTGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           ++D   G+ G L  AMN +            +    +         G E+    + + + 
Sbjct: 385 VWDFATGSAGLLVAAMNEMLIDAKEKIKSPEELEQKNLKIKAEQLLGLEVLSSIYMLAIL 444

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            M++         D S NI    +L+              N  FGK             +
Sbjct: 445 NMILMG-------DGSSNILNRDSLND----------FNGNYGFGKT-----------DE 476

Query: 318 NGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                 F    P  +DG+ M+F+    + +E      G A+I++ +S    G   + E  
Sbjct: 477 KFPATAFILNPPYSADGNGMVFVEKALSMMEK-----GYASIIIQNSA---GSGKAIEYN 528

Query: 377 IRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            R  +L+N+ + A + +P DLF   +++ T +++    +  ++   V+ I+ ++   +  
Sbjct: 529 KR--ILKNNTLLASIKMPIDLFIGKSSVQTNIYVFRVAEPHQKDEIVKFIDFSNDGYTRT 586

Query: 436 NEGKKRRIINDDQRRQ 451
           N  K    + D  R +
Sbjct: 587 NRKKASNNLRDTDRAK 602


>gi|145631344|ref|ZP_01787116.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
 gi|144983129|gb|EDJ90629.1| putative type I restriction-modification system methyltransferase
           subunit [Haemophilus influenzae R3021]
          Length = 169

 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 58/166 (34%), Gaps = 22/166 (13%)

Query: 1   MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVRE--K 58
           M       A L   IW+ A D+ G     DF + +L     R +         A  E   
Sbjct: 1   MVAAIQQRAELQRRIWQIANDVRGSVDGWDFKQYVLGTLFYRFISENFTNYIEADDESVN 60

Query: 59  YLAFGGSNIDLE---SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-ASFS------ 108
           Y       I  +     +K  GY  Y  S+   + + + NT  NL + +   FS      
Sbjct: 61  YAKLPDEIITPDIKTDAIKTKGYFIY-PSQLFKNVVATANTNPNLNTELKQIFSDIENSA 119

Query: 109 ---DNAKAIFEDF-DFSSTIARL-----EKAGLLYKICKNFSGIEL 145
               + + I   F DF +T  RL     +K   L  + K  + ++ 
Sbjct: 120 TGYPSEQDIKGLFADFDTTSNRLGNTVADKNSRLAAVLKGVAELDF 165


>gi|218297123|ref|ZP_03497794.1| N-6 DNA methylase [Thermus aquaticus Y51MC23]
 gi|218242537|gb|EED09075.1| N-6 DNA methylase [Thermus aquaticus Y51MC23]
          Length = 1214

 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 105/354 (29%), Gaps = 61/354 (17%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLY-KICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           F    + ++  F    T      +  L  ++    +  +     V   ++ ++Y H    
Sbjct: 453 FGRAEREVYAHFFAEGTFDWYRPSRPLALELLWKLAHYDFR--DVDQDIIGHLYAH---Y 507

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
              E       + TP +VV      +       F+       TL DP CG+G FL  A  
Sbjct: 508 ATEEHRHHTGMYYTPPEVVDYILDRV------GFRGKEVATATLLDPACGSGTFLVRAAR 561

Query: 226 HVADCGSHHK------------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPR---- 269
            V +                          G ++ P    +    +LI+ ++        
Sbjct: 562 RVLEAFRDKGGKIPEENLPFALKAVAESLVGLDVNPFACYLAEINLLIQVIDLLEGIKHL 621

Query: 270 ----RDLSKNIQQGSTLSK----------DLFTGKR-------FHYCLSNPPFGKKWEKD 308
                     +    TL            DL+  ++       F + + NPP+ +     
Sbjct: 622 GQDVGLDRFRVYNTDTLVARFPSAAFLDGDLWPEEKVKLTPEAFDFVVGNPPYVRADAPG 681

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                   KN    R G          +   F+       +     GG+  +++S S   
Sbjct: 682 MKEYRDAVKNQLPLREGVEGVLQKKWDLYVPFVALALEWAKP----GGKVGLLVSVSI-- 735

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERR 419
              + S    IR  LL++ L+E +  L    LF    +   + ++      E  
Sbjct: 736 --ESASFAEAIRNRLLQHTLLE-VAHLNGKALFPDAVVDNTILVVQKASPPEGH 786


>gi|224456727|ref|ZP_03665200.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874474|ref|ZP_05247184.1| type I restriction system endonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254840473|gb|EET18909.1| type I restriction system endonuclease [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158819|gb|ADA78210.1| putative N-6 DNA methylase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 388

 Score = 67.3 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 99/347 (28%), Gaps = 58/347 (16%)

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DL 286
                  +        G +  P    V    M++         D    I     L   + 
Sbjct: 41  EKQKLEIQYLSKSSIFGTDANPRMARVSKMNMIMHG-------DGHNGIHHNDGLLNVNG 93

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN---------------------------- 318
               RF   L+NPPFG    KD   V +E K                             
Sbjct: 94  IFRNRFDVILTNPPFGTNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNF 153

Query: 319 GELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           G+  R      +IS    +LF+    + L+     GGR  IVL    L +        + 
Sbjct: 154 GKPIRSLYKTGEISVATEVLFVERCLDLLK----AGGRMGIVLPEGVLNSSNLQ----KA 205

Query: 378 RRWLLENDLIEAIVALPTDLFFRTN--IATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           R +      I  IV+LP DLF  +   + T L  L              +   + + +++
Sbjct: 206 REYFESRAKILLIVSLPQDLFVSSGATVKTSLVFLKK----------FTVEEQEQYETVK 255

Query: 436 NEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGL 495
            + +K        +   +   +  E      +   R     +        +   LD+T +
Sbjct: 256 TQAEKEAEQKYQPQLLEIQQKIDFEKSIKQHITKLRKALKTK-TAKNKENLQLTLDETIV 314

Query: 496 ARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
              E     ++     +       +   Q I      E  + E  K+
Sbjct: 315 EHTEYKKKVKQYKAQLKELEAKQQEEAKQLIKQKFDYEIPIAEIEKA 361


>gi|166363559|ref|YP_001655832.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166085932|dbj|BAG00640.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 998

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/458 (12%), Positives = 136/458 (29%), Gaps = 59/458 (12%)

Query: 105 ASFSDNAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            + +   + + E F F  ++    L      Y + +  +   ++      + +  IYE+ 
Sbjct: 233 NNIARELQGVIETF-FTGNTKRNTLGTIERYYAVIRR-TAANIYNHHEKQKFLKAIYENF 290

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +  + ++      TP ++V      +         K        + DP  GTG F+T
Sbjct: 291 YKAYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFRKLLADPGVEILDPATGTGTFIT 350

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           + + ++       +       H  E+    + +    +     +     +  ++I    T
Sbjct: 351 ELIEYL--PKDKLRYKYKHEMHCNEVAILPYYIANLNIEFTYKQKMGEYEEFEHICFVDT 408

Query: 282 LSKDLFTGKRFH---------------------YCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           L    F  K+                         + NPP+    + + D  +       
Sbjct: 409 LDHAAFHLKQMDLFAMSVENTQRIQNQNDRNISVIIGNPPYNANQQNENDNNKNRKYPAI 468

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             R      + S      L  + ++            G  A + +SS +           
Sbjct: 469 DKRIKDTYIEESTAQKTKLYDMYSRFFRWATDRLGENGIIAFITNSSFIDARTFDGF--- 525

Query: 377 IRRWLLENDLIEA-IVALPTDL------------FFRTNIATYLWILSNRKTEERRGKVQ 423
             R ++EN+  E  I+ L  ++             F       + ++  R++     ++ 
Sbjct: 526 --RKVVENEFSEIYIIDLGGNVRKNPKLSGTTHNVFGIQTGVAISLIVKRESNNLPCRIL 583

Query: 424 LINATDLWTSIRNE----GKKRRIINDDQRRQILDIYVSREN---GKFSRMLDYRTFGYR 476
                +L T+ +        K   ++ +    I D   +        F+ ++       +
Sbjct: 584 YTRRPELDTASQKLEFLSSTKLNQLDFEHI--IPDKKHNWIEQSDNDFNDLIPVVDKNTK 641

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
            +K    ++  F     G++    +  +     L    
Sbjct: 642 LLKNKTDIQALFEFFSLGVSTNRDEWVFEDDEQLLSKK 679


>gi|162448117|ref|YP_001621249.1| site-specific DNA-methyltransferase [Acholeplasma laidlawii PG-8A]
 gi|161986224|gb|ABX81873.1| site-specific DNA-methyltransferase [Acholeplasma laidlawii PG-8A]
          Length = 559

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 39/267 (14%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             +L+D   G GGFL   +N   +             +G E+    HA+    + I   +
Sbjct: 114 GDSLFDLGSGLGGFLIGTLNLAQERSIELSA-----LYGVEINYNQHALSKMVLEIFTFD 168

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRF 324
           S  +      I   + L+ D +    ++     PP G K    D + +          R 
Sbjct: 169 SSVK----SKINYANILT-DKYEL-TYNKGFVYPPLGMKLMGNDLNYISIFKNIVLSTRN 222

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                       +F+  L + L+       RA  +++   LF+    + + + R  +L++
Sbjct: 223 SV--------EWIFIDKLLSNLKGEDA---RAVALVTGRTLFS----AVDRDYRNEILKS 267

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRII 444
            ++E I+ LP  +   T+I  +L I S          V+L +A+     + +  +K    
Sbjct: 268 GMLEGIIELPQGIVDNTSIKLFLLIFSKN-----NKNVRLFDAS-----MFSSKRKFNGP 317

Query: 445 NDDQRRQILDIY--VSRENGKFSRMLD 469
                +QI+D Y          S + D
Sbjct: 318 IKVDVKQIIDFYYGNDVAKKDISELTD 344


>gi|300858886|ref|YP_003783869.1| hypothetical protein cpfrc_01469 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686340|gb|ADK29262.1| hypothetical protein cpfrc_01469 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206586|gb|ADL10928.1| Hypothetical protein CpC231_1461 [Corynebacterium
           pseudotuberculosis C231]
 gi|308276829|gb|ADO26728.1| Hypothetical protein CpI19_1468 [Corynebacterium pseudotuberculosis
           I19]
          Length = 72

 Score = 67.3 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M   YE+L++RF  +  +   +F TPR VVHL T LL           P    T+YDPTC
Sbjct: 1   MGAAYEYLLKRFVDDAGQKVGEFFTPRSVVHLITRLL----------KPQENETVYDPTC 50

Query: 215 GTGGFLTDAMNHVADCGSHHKI 236
            TGG L + +  V   G   + 
Sbjct: 51  STGGMLFEPVAAVDANGGDTRT 72


>gi|323463227|gb|ADX75380.1| putative DNA methyltransferase [Staphylococcus pseudintermedius
           ED99]
          Length = 586

 Score = 66.9 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 28/269 (10%)

Query: 158 IYEHLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            +E  +   F    ++      TP +VV+L     +  D   + +       + DP+ GT
Sbjct: 51  AFEKFMYFDFDKVDTKNFGITFTPTNVVNLLFDETIGEDFKKYSQK-----KVLDPSIGT 105

Query: 217 GGFLTDAMNHVADCGSHHK--IPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLS 273
           G F    +    +   +           +G +++ E    C   +++  L  D    DL 
Sbjct: 106 GNFFIKFLIKQKELDKNFSLVEFIENNLYGYDIKIENIFFCKLNLILLCLIFDEDVEDLK 165

Query: 274 KNIQQGSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            NI     + +  +      F   + NPP+  K +  K+   +  K      +       
Sbjct: 166 FNIFHSDIILEYLNGTLETNFDLIIGNPPY-VKQQNIKENYREILKRNFDTIYS------ 218

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
              +               N  GR   ++ +  L    A      +R  L++++ IE I+
Sbjct: 219 ---NYNLYYSFIELSTKLLNENGRIIFLVPNYILKIKSAQY----LRELLIKDNWIEKII 271

Query: 392 ALPTD-LFFRTNIATYLWILSNRKTEERR 419
              T+ +F  + I TY  ILS +K  +  
Sbjct: 272 DFETNKIF--SGIDTYTMILSMKKNSDTT 298


>gi|253578942|ref|ZP_04856213.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849885|gb|EES77844.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 274

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               +  +Y  L        +     F TP DV      L +   D + K       ++ 
Sbjct: 88  DQDFLGRLYMSL-----ELGNHWKGQFFTPYDVCRCMAELTI--HDNMQKLQNKEWVSVN 140

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP-R 269
           DP CG G  L  A N     G +++   +      +++  T  +C   + +         
Sbjct: 141 DPACGAGATLIAAANTFRRKGFNYQTQVL--FVANDIDRVTAQMCFIQLSLLGCPGYVAV 198

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHY 294
            +   N   G+TL  +    + F Y
Sbjct: 199 ANTLSNPVAGNTLMPEERPEQEFWY 223


>gi|332664158|ref|YP_004446946.1| hypothetical protein Halhy_2190 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332972|gb|AEE50073.1| hypothetical protein Halhy_2190 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 974

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 114/368 (30%), Gaps = 63/368 (17%)

Query: 103 YIASFSDNAKAIFEDFDFSSTI--------ARLEKAGLLYKICKNF-SGIELHPD-TVPD 152
           YI +F +       +  F+  +          L KA  L  +   F + IE H       
Sbjct: 238 YINAFLEEL-----NIKFNGKVFDLKPEEKQELGKAN-LSYVAAVFDADIEGHQYVLWKL 291

Query: 153 RVMSNIYEHLIRRFGSEV-SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              + +   LI         +      TP  +V+L     +  D A    S G    + D
Sbjct: 292 YAFNFLPIELISGIYEAFLKKEKGVVYTPPYLVNLLIDECMPLDKAEEMFSTG-TFKVLD 350

Query: 212 PTCGTGGFLTDAMNHVADCG----------------SHHKIPPILVPHGQELEPETHAVC 255
           P CG+G FL  A+  +                       K        G ++E     + 
Sbjct: 351 PACGSGIFLVAALKRMVQWQAILNYKATESIDYPNIETIKRIVRDNIFGVDIEEGATFIS 410

Query: 256 VAGMLIRRLE----------SDPRRDLSKNIQQGSTL-SKDLFTGKRFHYCLSNPPFGKK 304
           +  + I   +                  +NI   +     D    + F   + NPPF   
Sbjct: 411 IFSLCIAICDKLSPMQIWNELRFDDLGEENIVTDNFFGVFDQLKAQGFDLVIGNPPFNPP 470

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPK--ISDGSMLFLMHLANKLELPPNGGGRAAIVLS- 361
               K       +           P   IS G +   +   +K       GG+   +L  
Sbjct: 471 SGFSKLGYFDLIQKNFSI-----TPNLLISGGQLA--LFFLDKAVELRRSGGKICFILPA 523

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVA---LPTDLFFRTNIAT-YLWILSNRKTEE 417
           +S L+N +A       R + +EN  +E I     L   LF  +        I ++ + +E
Sbjct: 524 NSWLYNSKATP----YRTFFMENYRVEKIFDFTHLSDRLFHGSATPAVCATIATDLQPKE 579

Query: 418 RRGKVQLI 425
           R GKV  I
Sbjct: 580 RLGKVLHI 587


>gi|268324537|emb|CBH38125.1| probable DNA methylase [uncultured archaeon]
          Length = 1016

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 105/394 (26%), Gaps = 105/394 (26%)

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR---- 165
            IF+ F+       L     +L  I +   +         +   ++ N+YE  + +    
Sbjct: 281 GIFD-FETDRITPALTIDDKVLKMIIQSLYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 339

Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
                       EV +    + TP+ +V       +    A           + DP CG+
Sbjct: 340 TAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVENTVGKLIAGKTPEEIAHIKILDPACGS 399

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL----------------------------VPHGQELE 248
           G FL  A  ++        +                                   G +++
Sbjct: 400 GSFLIGAYTYLLRYHLDWYVNNKPKKHKEAVFQVKADEWYLTTAEKKRILLDNIFGVDID 459

Query: 249 PETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLSKDLF------ 287
            +   V    +L++ LE +                  +L  NI+ G++L    +      
Sbjct: 460 SQAVEVTKMSLLLKVLEHESRESIDQQMKLGLEGVLPNLGDNIKCGNSLIGPEYYESEQQ 519

Query: 288 -----------------TGKR-----------FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                              +R           F   + NPP+ +     + A  +     
Sbjct: 520 GSLFNEEEMRRVNVFDWEDERKGFGKILKKGGFDAVIGNPPYVRIQTMKEWASTEVEFYK 579

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           +           S G+    +    +     N  GR   +L        +A  G   +R 
Sbjct: 580 KHH------ASASKGNYDIYVVFVERALKLLNVRGRMGYILPHKFF---QAKYG-QPLRE 629

Query: 380 WLLENDLIEAIVALPT-DLFFRTNIATYLWILSN 412
            +     ++ IV      +F      T L  L  
Sbjct: 630 LIARGKHLDKIVHFGDQQVFAGATTYTCLLFLEK 663


>gi|21914203|gb|AAM81323.1|AF522187_1 BpmI endonuclease-methyltransferase fusion protein type IIG
           [Bacillus pumilus]
          Length = 1009

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/460 (14%), Positives = 129/460 (28%), Gaps = 109/460 (23%)

Query: 39  TLLRRLECALEPTRSAV--REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
             LR  E         +   + Y              + +   F N+  +          
Sbjct: 232 IFLRVCEDRTIEKYETIKSIKNYEELKD-------LFQKSDRKF-NSGLFDF-------I 276

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRV 154
            + L   +   S+    IF D  F  +     +    +L +I + F G E+  ++     
Sbjct: 277 DDTLLLEVEIDSNVLIEIFSDLYFPQSPYDFSVVDPTILSQIYERFLGQEIIIESGGTFH 336

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           ++            EV+       TP+ +V       L P     K +      + D  C
Sbjct: 337 ITE---------SPEVAASNGVVPTPKIIVEQIVKDTLTPLTEGKKFNELCNLKIADICC 387

Query: 215 GTGGFLTDAMNHVADCG--------------------------SHHKIPPILVPHGQELE 248
           G+G FL  + + + +                               +        G ++ 
Sbjct: 388 GSGTFLISSYDFLVEKVMEKIIEENIDDSDLVYETEEGLILTLKAKRNILENNLFGVDVN 447

Query: 249 PETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLF------ 287
           P    V    +L++ LE +                  DL+  I+ G++L  + F      
Sbjct: 448 PYAVEVAEFSLLLKLLEGENEASVNNFIHEHEDKILPDLTSIIKCGNSLVDNKFFEFMPE 507

Query: 288 ------------------------TGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELG 322
                                       F   + NPP+   +  K     E E+   +  
Sbjct: 508 SLEDDEILFKANPFEWEEEFPDIMANGGFDAIIGNPPYVRIQNMKKYSPEEIEYYQSKDS 567

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            +     +  D   LF+      L      G    I+     +  G       E+R+++ 
Sbjct: 568 EYTVAKKETVDKYFLFIERALILLNPTGLLGY---IIPHKFFITKGG-----KELRKFIA 619

Query: 383 ENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGK 421
           E   I  I+    T +F      T + I+   K  + + K
Sbjct: 620 EKHQISKIINFGVTQVFPGRATYTAILIIQANKMAQFKYK 659


>gi|300858888|ref|YP_003783871.1| hypothetical protein cpfrc_01471 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300686342|gb|ADK29264.1| hypothetical protein cpfrc_01471 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302206588|gb|ADL10930.1| Hypothetical protein CpC231_1463 [Corynebacterium
          pseudotuberculosis C231]
 gi|308276831|gb|ADO26730.1| Hypothetical protein CpI19_1470 [Corynebacterium
          pseudotuberculosis I19]
          Length = 62

 Score = 66.9 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/57 (15%), Positives = 17/57 (29%)

Query: 8  AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGG 64
           A L + +W+ A  L G     D+   + P    + +    E   +           
Sbjct: 5  QAKLESKLWEAANSLRGAMDAADYKNYVFPVFFWKWISDNWELGHTKFLADVERARP 61


>gi|332798525|ref|YP_004460024.1| type I restriction-modification system, M subunit
           [Tepidanaerobacter sp. Re1]
 gi|332696260|gb|AEE90717.1| type I restriction-modification system, M subunit
           [Tepidanaerobacter sp. Re1]
          Length = 127

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 25/131 (19%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
                + L + +W++ ++L G    + +   +L    ++ +                   
Sbjct: 11  NGNKKSDLYSKLWQSCDELRGGMDASQYKDCVLVRLFVKYVTD----------------K 54

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYIASFSD--NAKAIFEDFDF 120
                    V   G SF+      +  L  ++   + +   I   ++  +   I    DF
Sbjct: 55  YYGKPDSLLVVPDGGSFH-----DMVKLKGNSEIGDGMNKIIHRLAEENDLVGIITVADF 109

Query: 121 SSTIARLEKAG 131
           +    +L K  
Sbjct: 110 NDD-DKLGKGK 119


>gi|153870433|ref|ZP_01999836.1| adenine specific DNA methyltransferase [Beggiatoa sp. PS]
 gi|152073099|gb|EDN70162.1| adenine specific DNA methyltransferase [Beggiatoa sp. PS]
          Length = 1026

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 86/316 (27%), Gaps = 48/316 (15%)

Query: 112 KAIFEDFDF----------SSTIARLEKA--------GLLYKICKNFSGIELHPDTVP-- 151
           + IF   DF           + I +L             L    K    +    D     
Sbjct: 225 RRIFNHPDFAKRNVIAREIENVIDKLTAKSFNRDAFFDELKYFYKALEDVAATIDEYSYK 284

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLY 210
              ++ +YE   + F  +V++      TP+ +V      +    D    K        + 
Sbjct: 285 QYFLNTVYERFFQGFSVQVADTHGIVYTPQSIVDFMVKSVNEILDQEFGKSLASKGVHIL 344

Query: 211 DPTCGTGGFLTDAMNHVADCGS-HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           DP  GTG F+   M  +A       +       H  E+    + +    +    L+    
Sbjct: 345 DPFVGTGNFIVRIMREIATQSRMALRHKYKNELHCNEVMLLPYYIASMNIEHEFLDLMGN 404

Query: 270 RDLSKNIQQGSTL-----------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
               + I    T                           F   + NPP+      + D  
Sbjct: 405 YQPYEGICLADTFELAEGIQSEMFAPENTKRVKKQQKTDFFVIIGNPPYNAGQINENDNN 464

Query: 313 EKEHKNGELGRFGPGLPKISDGSML-----FLMHLANKLELPPNGGGRAAIVLSSSPL-- 365
           +  +     GR      K S  ++L       +             G  A V ++S L  
Sbjct: 465 KNRNYPVIDGRVRETYSKDSKATLLRKLFDPYVKAIRWASDRIGDEGIVAFVSNNSFLDD 524

Query: 366 --FNGRAGSGESEIRR 379
             F+G     E +  +
Sbjct: 525 LSFDGMRKHLEQDFSK 540


>gi|300870186|ref|YP_003785057.1| fused endonuclease-methyltransferase [Brachyspira pilosicoli
           95/1000]
 gi|300687885|gb|ADK30556.1| endonuclease-methyltransferase fusion protein type IIG, BpmI
           [Brachyspira pilosicoli 95/1000]
          Length = 906

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/460 (14%), Positives = 130/460 (28%), Gaps = 115/460 (25%)

Query: 82  NTSEYSLSTLGS--TNTRNNLESY----IASFSDNAKAIFED---------FDFSSTIAR 126
           N   Y L  L +      ++ ++Y      S+ +N   IF+          FD  + +  
Sbjct: 159 NVENYGLLALANPKNKNEDDFKNYGFNGENSYYENLNYIFDRANEKYNSGLFDEDAIVRN 218

Query: 127 LE-KAGLLYKICKNF--SGIELHPDTVPDRVMSNIYEHLIRR-------------FGSEV 170
           L      +  I               +P  ++ N YE  + +                EV
Sbjct: 219 LNIDDKTIKDIIDELYTPKNPYQFSVIPVEIIGNAYEQFLGKTISIDKNHKAVIELKPEV 278

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    + TP  +V    A  +            +   + DP CG+G FL  A  ++ + 
Sbjct: 279 RKAGGVYYTPEYIVDYIVANTVGEAIKGKTPDEIVNIKILDPACGSGSFLLGAYKYLLNY 338

Query: 231 GSH----------------------------HKIPPILVPHGQELEPETHAVCVAGMLIR 262
                                           K   I    G +++     V    +L++
Sbjct: 339 HKEYFLKNKTKKYMGSRYEIIDESGNLALWVRKQILINNIFGVDIDSNAVEVAKLSLLLK 398

Query: 263 RLESDPRRDL---------------SKNIQQGSTL------------------------- 282
             E     +                  NI+ G++L                         
Sbjct: 399 SFEDSFNVNEYGQGSLLNEKILPSLDNNIKCGNSLIGNDFYESHLDLDDATLYKINCFDW 458

Query: 283 ---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
               +D+     F   + NPP+ +        +EKE K G             D   LF 
Sbjct: 459 NSKFRDIMKTGGFDVVIGNPPYVQ-----IQGMEKELKEGYKEANYKNYISTGDIYQLFF 513

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
               + L+     GG   ++ S+  +   +A  G +  R +   N  +  ++ L    F 
Sbjct: 514 EKGLDVLK----IGGIVGMITSNKWM---QANYG-AVTRDYFYRNANVNGVIDLGGGRFK 565

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
              + T + + S +  E +  +     A   +  +     
Sbjct: 566 GATVDTSIILYSKKDDEIKINEPIEFKAVKFYDDLSELNN 605


>gi|319951791|ref|YP_004163058.1| n-6 DNA methylase [Cellulophaga algicola DSM 14237]
 gi|319420451|gb|ADV47560.1| N-6 DNA methylase [Cellulophaga algicola DSM 14237]
          Length = 1066

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/494 (13%), Positives = 143/494 (28%), Gaps = 118/494 (23%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL--GSTN 95
           F  +   E  L    +++R     +       + +        Y+  +     +  G   
Sbjct: 235 FLFIFFAEDRLLLPPNSIRSIVNQWTDLRDKYDEYF-----PLYDRFKKYFGYMNTGHKG 289

Query: 96  TRNNLESYIAS-FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            ++++ +Y    F+ +   + +    +          LLYK     S  +   +   + V
Sbjct: 290 MQHDIFAYNGGLFTPD--EVLDKIKIND--------DLLYKHTVKLSNYDFESEVSVN-V 338

Query: 155 MSNIYEHLIRRFGSEVS--------------EGAEDFMTPRDVVHLATA----LLLDPDD 196
           + +I+EH +       +              +    F TP+ +          +L +   
Sbjct: 339 LGHIFEHSLTEIEEIQNELEGIPHDGGKTKRKKEGVFYTPKYITKYIVDKTVGMLCEEKK 398

Query: 197 ALFKESPGMIR----------------------------TLYDPTCGTGGFLTDAMNHVA 228
                                                  T+ DP CG+G FL  A+  + 
Sbjct: 399 FELDIQESEYEKERKGRQKSTLKKLTKKLEDYRKWLLQLTICDPACGSGAFLNQALEFLI 458

Query: 229 DCGSHHKIPP------------------ILVPHGQELEPETHAVCVAGMLIRRLE-SDPR 269
               +                           +G ++  E   +    + +   E     
Sbjct: 459 TEHQYIDELQAKLFGDALVLSDIENVILENNIYGVDINEEAIEIAKLALWLHTAEKGRKL 518

Query: 270 RDLSKNIQQGSTLSKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAV 312
             L+ NI+ G++L  D                  F    F   + NPP+ +  +      
Sbjct: 519 TSLNNNIKCGNSLIDDPNVAGHKAFNWQQEFPEVFARGGFDVVIGNPPYVQHRKIF---- 574

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             E  N     +       SD S+ F     N L+     G      ++++  FN   G 
Sbjct: 575 --EFSNFFKSAYKVYT-GTSDLSVYFFEKAFNILKKNSVLG-----YINTNKFFNTEYG- 625

Query: 373 GESEIRRWLLENDLIEAIVAL-PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
              E+R +L +++ I  I+    + +F    +++ + I +  +       ++    +   
Sbjct: 626 --KELRDFLTKHN-IHNIINFEQSAIFKDALVSSVILIATKEEPNNETNYIEFHKESINA 682

Query: 432 TSIRNEGKKRRIIN 445
              + E + R    
Sbjct: 683 EKFQRELENRNRTI 696


>gi|258616829|ref|ZP_05714599.1| Type I restriction-modification system methylation subunit
          [Enterococcus faecium DO]
          Length = 79

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPT----RSAVREKYLAFGG 64
          A L   ++  A++L      +++   +L     + L   L            E+Y     
Sbjct: 3  AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSK 62

Query: 65 SNIDLESFVKVAG 77
            +     +    
Sbjct: 63 QTMLYRELLSDEE 75


>gi|169830944|ref|YP_001716926.1| hypothetical protein Daud_0772 [Candidatus Desulforudis
          audaxviator MP104C]
 gi|169637788|gb|ACA59294.1| hypothetical protein Daud_0772 [Candidatus Desulforudis
          audaxviator MP104C]
          Length = 44

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRR 43
          M  F         FIW  A+ L G ++   +  V+LP T+LRR
Sbjct: 1  MNNFGEK----VAFIWSVADLLRGPYRPNQYKDVLLPMTVLRR 39


>gi|219668644|ref|YP_002459079.1| N-6 DNA methylase [Desulfitobacterium hafniense DCB-2]
 gi|219538904|gb|ACL20643.1| N-6 DNA methylase [Desulfitobacterium hafniense DCB-2]
          Length = 673

 Score = 66.5 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/436 (14%), Positives = 126/436 (28%), Gaps = 58/436 (13%)

Query: 106 SFSDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
           S+S     + E+  D    I  L+ A  L                    ++  +Y  L  
Sbjct: 152 SYSMLIDDLLENVSDLEGQILHLKTALSL-----------PMDYIEEQDLLGLLYMSL-- 198

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
              +   +    + TP  VV               +        L DP CGTG FL    
Sbjct: 199 -QNAGERKSRGVYYTPLAVVK--------DSVDHLEPFLHEKIRLLDPCCGTGNFLMHVY 249

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            ++ +             +G ++ P + ++    M +   ++D    L KN      L++
Sbjct: 250 KYIKNLDG---------IYGYDISPLSVSLTRINMALIS-KTDNLEVLYKNFLCKDPLAR 299

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +   F   + NPP+G  ++ +     K             +         F +    
Sbjct: 300 --KSNLEFDVIIGNPPWGFNYDAEARQALK----------KAYVSARKKTVESFAVFTEY 347

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+   + GG  + VL  S L           +R +L+++  I+  +    D F      
Sbjct: 348 ALKTAID-GGIVSFVLPQSLLN----VKIHQPLRDYLVDHAKIKR-IRYWDDAFDGVQCP 401

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWT----SIRNEGKKRRIINDDQRRQILDIYVSRE 460
                L  +        ++++  +  +        +       + DD+   I  I     
Sbjct: 402 AMALTLQKKHQGFEIKGIEVVTNSRTFRINIDRELDLSNWNFDLTDDEISLIKRI---ES 458

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
            GK   + D+  F    +       +S I              ++      Q+F     K
Sbjct: 459 PGKVVYLKDHADFALGIVTGDNKRFLSNIQSDDREVIYRGSDVYKYRCLPGQNFIRFEPK 518

Query: 521 PMMQQIYPYGWAESFV 536
              Q      +     
Sbjct: 519 SFQQIAPIDLYRAKEK 534


>gi|268680121|ref|YP_003304552.1| hypothetical protein Sdel_1501 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268618152|gb|ACZ12517.1| protein of unknown function DUF450 [Sulfurospirillum deleyianum DSM
           6946]
          Length = 974

 Score = 66.5 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/435 (13%), Positives = 130/435 (29%), Gaps = 80/435 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             +   E       + ++E    F           +   Y  Y+  ++    + + N + 
Sbjct: 233 IFILFAEDRALLRHNTIKEIREEFANQ--------RFTDYKLYDIFKFYFDGINTGNAKL 284

Query: 99  NLESYIAS------FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           N+  Y         F D+ K   +D    +   +L     +  I  N  G          
Sbjct: 285 NIPKYNGGLFATDEFLDSLK--IDDVCLDANAQKLSNYDFVSDISVNILGHIFEQSLSDL 342

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM------- 205
             ++     L     +   +    F TP  +        L       KE+  +       
Sbjct: 343 EELNASINDLAFDKKNSKRKKDGVFYTPEYITRYIVENTLGKLCEEQKEALHVKSVEAPK 402

Query: 206 ------------------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---- 237
                                      + DP CG+G FL  A+ ++       +      
Sbjct: 403 NSKKPTKEEALTKENLERYKEWLLHVKILDPACGSGAFLNQALEYLIKEHKELQEKLAIM 462

Query: 238 -------------PILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLS 283
                             +G ++  +   +    + +R   +     +LS  I+  ++L 
Sbjct: 463 GDITAYYEIEASILENNLYGVDINEDAVEIARLSLWLRTAQKGRALANLSDKIKCANSLL 522

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  F    F   + NPP+ +     ++A++   K   + +F       +D  + F     
Sbjct: 523 EMPFEENSFDVVIGNPPYVR-----QEAIDNIIKEQYMQKFQNVATSTADLYVYFYELSI 577

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTN 402
           N L+      G    +  +  +           +R++L +   I+ +V     ++F   +
Sbjct: 578 NLLKE----NGILGFITPNKWMERKYG----VNLRKYL-KPYAIQKLVNFGELNIFEDAS 628

Query: 403 IATYLWILSNRKTEE 417
               + IL N+K++ 
Sbjct: 629 TEPAIIILENKKSDN 643


>gi|284802098|ref|YP_003413963.1| N-6 DNA methylase [Listeria monocytogenes 08-5578]
 gi|284995240|ref|YP_003417008.1| N-6 DNA methylase [Listeria monocytogenes 08-5923]
 gi|284057660|gb|ADB68601.1| N-6 DNA methylase [Listeria monocytogenes 08-5578]
 gi|284060707|gb|ADB71646.1| N-6 DNA methylase [Listeria monocytogenes 08-5923]
          Length = 636

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 117/338 (34%), Gaps = 56/338 (16%)

Query: 116 EDFDFSSTIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYE------HLIRRFG 167
           E+ ++S  + RL+  GL   Y + +NF+      +++  +  S+IYE        I +  
Sbjct: 73  ENTNYSILLERLDVDGLFSWYSMAENFATDNF--ESINVQEFSDIYELVNQHDTFIDK-- 128

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
             + +    F TP ++V      +     +L          L DP CGTG FL + +  +
Sbjct: 129 -NIKKKLGQFYTPTNIVQRMIFEIKTNLRSLTN-----TDLLIDPACGTGVFLIEIIKEL 182

Query: 228 ADCGSHHKI--PPILVPHGQELEPETHAVCVAG---MLIRRLESD---------PRRDLS 273
                  ++           ++ P            +L++    +            +  
Sbjct: 183 KKIFQQSEVIEYVKNNMFAYDVNPFAVIATKINIAYILLKEFPEEKEKILDYIVNDNNAF 242

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI+  +T+ +       +   L NPP+ K  ++    +    +         G P I  
Sbjct: 243 CNIRWKNTVVEP--DNNIYTIILGNPPYFKLNKELIKNISGYDEIL------YGQPNI-- 292

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSS--SPLFNGRAGSGESEIR-RWLLENDLIEAI 390
               F   +   ++     G  + IV  S  S L+     S   ++R R L+  D     
Sbjct: 293 --YSF--FMYWGMKHLKKDGAMSFIVPQSIRSGLYFKNLRSKMKDLRIRALIHIDS---- 344

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                ++F R   A  +  L N+     + K+Q  +  
Sbjct: 345 ---RQNVFDRAEQAVLIICLENKPVANSKTKIQFYDGN 379


>gi|124005662|ref|ZP_01690501.1| type I restriction-modification system, M subunit, putative
           [Microscilla marina ATCC 23134]
 gi|123988730|gb|EAY28336.1| type I restriction-modification system, M subunit, putative
           [Microscilla marina ATCC 23134]
          Length = 1014

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 139/469 (29%), Gaps = 89/469 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLS-TLGSTNT 96
             +  LE   + T +A  +KY     S    +    V G Y  Y   E + +  L     
Sbjct: 194 LFILYLEDR-KATDAAFYQKYTGAQNSQTYFDVLNDVKGTYKLYAKLEDAFNGNLSPITA 252

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                  I     + + I + F       R E   L     K F       D +P  ++S
Sbjct: 253 EETKIVTIQ----HLQEIRKCF----WSERREDGQL-----KLFDWRIFSFDVIPVLLLS 299

Query: 157 NIYEHLIRRF-GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           NIYE  + +  G         F TP  +       +L       K+         DPTCG
Sbjct: 300 NIYEDFLEKEEGEASKTKKGAFYTPPALAEFILNEVLPY---PTKDDTNYQVKTLDPTCG 356

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHAVCVAGMLIRRL 264
           +G FL + +N + D          L              G E+E E   V    + +  L
Sbjct: 357 SGIFLVETLNRLLDRWQVAHPNQSLSFEVICQIVQDNIFGIEIEKEAIKVAAFSLYLAML 416

Query: 265 E--------------------SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           +                     +       N+ + S+LS   F    F   + NPPF + 
Sbjct: 417 DRLEPKTLWQTARFPYLIYDPDNDADKQGANLFRMSSLSTGAFENIDFDLVVGNPPFSRG 476

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              ++    K +               S+  + FL              G+ A+V ++ P
Sbjct: 477 GLSNE---IKTYLKKYDF--------ASEMVLAFL-----HRATTLCPHGKIALVCAAKP 520

Query: 365 -LFNGRAGSGESEIRRWLLENDLIEAIVAL-----------PTDLFFRTNIATYLWILSN 412
            LFN          R++L +   +E +                +LF        +   S 
Sbjct: 521 ILFN--HLKPYQNFRQFLFQETYVEKVYNFSVLRNVSKKQGGRNLFASATSPVSVVFYSK 578

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
            K  +   K+                 K R+I+          Y+ RE 
Sbjct: 579 NKPVKMPEKLMYC--------APKTAIKNRMIDGIAIDSTDIKYLPREE 619


>gi|169823771|ref|YP_001691382.1| putative type I restriction-modification system methylation subunit
           [Finegoldia magna ATCC 29328]
 gi|167830576|dbj|BAG07492.1| putative type I restriction-modification system methylation subunit
           [Finegoldia magna ATCC 29328]
          Length = 570

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 78/206 (37%), Gaps = 25/206 (12%)

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 +I+Q    + D  +   ++   S PP G  +      V  ++      +     
Sbjct: 179 GHQNRASIRQEDYFNTD-LSTLEYNKVFSMPPMGMLYRDFDKRVNDKNLIELYKKNDFNT 237

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                     ++ + +  +       +A  ++ S  LF       + +IR++L++N  IE
Sbjct: 238 ----KNEWTDILKIISNTKFE-----KAIFIVHSGILF----KERDEKIRKYLIDNGYIE 284

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           +++ L   LF    I+T + ++S         KV++++A++++ S +        I  D 
Sbjct: 285 SVIELAPRLFTGIGISTNILLISKN-----NKKVKMVDASEIYHSDKMV----NKITKDD 335

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFG 474
              I D Y +      S+ +    F 
Sbjct: 336 VEVIFDAYKN--ESTISKEVSPEEFE 359


>gi|295113790|emb|CBL32427.1| Type I restriction-modification system methyltransferase subunit
           [Enterococcus sp. 7L76]
          Length = 254

 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 77/258 (29%), Gaps = 64/258 (24%)

Query: 134 YKICKNFSGIELHPDTVPDR---VMSNIYEHLIRRFGSEVSEGAE--DFMTPRDVVHLAT 188
           YK+ +  S          +         ++     F +E S+        TP  ++ +A+
Sbjct: 22  YKLIEILSSPSERELLFTNFFKEEQDLSFDWFTEYFQAEHSDRKGKKQDFTPDGIIRVAS 81

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L            G  R+  D   GTGG               +   P    + +E  
Sbjct: 82  GVL------------GPTRSNADICAGTGGLTI----------KRYAENPDAQFYCEEFS 119

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------------------DLFT 288
                  +  + IR + +         +  G +LS+                    D   
Sbjct: 120 DRALPFLLFNLAIRNINAV--------VLHGDSLSREFKAIYKLTKSTEFSSIEIVDEVP 171

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +    + NPP+   W   K+ +E+E  +         L   S     FL+   ++L+ 
Sbjct: 172 ATKSETVIMNPPYSLPWNPLKEYLEQERFSDFDV-----LAPKSKADYAFLLQGIHQLKE 226

Query: 349 PPNGGGRAAIVLSSSPLF 366
                G  +I+L     F
Sbjct: 227 ----NGVMSIILPHGGRF 240


>gi|172036013|ref|YP_001802514.1| putative N-6 DNA methylase [Cyanothece sp. ATCC 51142]
 gi|171697467|gb|ACB50448.1| putative N-6 DNA methylase [Cyanothece sp. ATCC 51142]
          Length = 604

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 82/288 (28%), Gaps = 33/288 (11%)

Query: 105 ASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            + +   + +   F F+ ++ R  L      Y + +  +   ++      + +  IYE+ 
Sbjct: 156 NNIARELQGVINTF-FTGSVRRNTLSSIERYYGVIRR-TAASIYNHHEKQKFLKAIYENF 213

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +  + ++      TP ++V      +         K        + DP  GTG F+T
Sbjct: 214 YKAYNPKAADRLGIVYTPNEIVRFMIESVDYLVHKHFGKLLCDSGVEILDPATGTGTFVT 273

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           + + ++       K       H  E++   + +    +     +     +   NI    T
Sbjct: 274 ELIEYL--PKDKLKYKYQNEIHCNEVQILPYYIANLNIEYTYQQKMNEYEEFNNICFVDT 331

Query: 282 LSKDLF---------------------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           L    F                       ++    + NPP+  K E            G 
Sbjct: 332 LDHTSFTGKQLDLFALTIENTERIKNQNDRQISVIIGNPPYNAKQENFNQNNANRFYEGI 391

Query: 321 LGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSS 363
             R      K                         +  G  A V ++S
Sbjct: 392 DKRIKETYIKQGTAQNQIVIYDMYTRFIRWASDRLSKNGIIAFVSNNS 439


>gi|149370586|ref|ZP_01890275.1| type II restriction enzyme, methylase [unidentified eubacterium
           SCB49]
 gi|149356137|gb|EDM44694.1| type II restriction enzyme, methylase [unidentified eubacterium
           SCB49]
          Length = 1109

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/473 (13%), Positives = 131/473 (27%), Gaps = 136/473 (28%)

Query: 42  RRLECALEPTR--------SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           R L       R          + +K+        D   +     Y          + L  
Sbjct: 263 RYLFIFFAEDRGLLPANSTQQILDKWKDDVDFGDDRPLYTLFKQY---------FNFLDQ 313

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPD 152
                   + I +++         F    T+  L+  + LLYK     +  +       +
Sbjct: 314 GRAGTAKRAEIYAYNGGL------FKEDKTLDSLDIDSDLLYKHTSKLAAYDFESQVDVN 367

Query: 153 RVMSNIYEHLIRR----FGSEVS----------EGAEDFMTPRDVVHLATALLLDPDDAL 198
             + +I+E+ +                      +    F TP+ +        +      
Sbjct: 368 I-LGHIFENSLNEIESVNAEIEGGDFDKQKSKRKKDGVFYTPKYITKYIVENTIGKLCDE 426

Query: 199 FKESPGMIR--------------------------------TLYDPTCGTGGFLTDAMNH 226
            K   G                                   T+ DP CG+G FL  A++ 
Sbjct: 427 KKTELGFKEEEYFKGRKNRQKATITKLVNILDTYRDWLLQLTICDPACGSGAFLNQALDF 486

Query: 227 VADCGSHHKIPPI------------------LVPHGQELEPETHAVCVAGMLIRRLES-D 267
           +    S+                           +G +L  E+  +    + +R  +   
Sbjct: 487 LIKEHSYIDELKTKVLGGGLQFSDIENTILENNIYGVDLNEESVEIAKLSLWLRTAQPRR 546

Query: 268 PRRDLSKNIQQGSTL-------------SKDLFT---------GKRFHYCLSNPPFGKKW 305
              +L+ NI+ G++L              ++ F          G  F   + NPP+ +  
Sbjct: 547 KLNNLNSNIKCGNSLIDSKTVAGDKAFNWEEQFPKVFDPSSGSGGGFDVVIGNPPYVRVQ 606

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSS 363
             D + V+   +N +               +  LF   + + ++               S
Sbjct: 607 NLDSNLVDYYFENYKS--------PKGKLDLSILFFEKVFSLIKTEGKASFI-------S 651

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNR 413
                +   GE  IR  L E  ++E I+   +LP  +F        ++ L+N 
Sbjct: 652 SSQWMQTDYGE-NIRNILSEKKILE-IINFGSLP--VFENVETYPAIFFLTNN 700


>gi|89894238|ref|YP_517725.1| hypothetical protein DSY1492 [Desulfitobacterium hafniense Y51]
 gi|89333686|dbj|BAE83281.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 519

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 123/431 (28%), Gaps = 58/431 (13%)

Query: 111 AKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
              + E+  D    I  L+ A  L                    ++  +Y  L     + 
Sbjct: 3   IDDLLENVSDLEGQILHLKTALSL-----------PMDYIEEQDLLGLLYMSL---QNAG 48

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    + TP  VV               +        L DP CGTG FL     ++ +
Sbjct: 49  ERKSRGVYYTPLAVVK--------DSVDHLEPFLHEKIRLLDPCCGTGNFLMHVYKYIKN 100

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +G ++ P + ++    M +   ++D    L KN      L++   + 
Sbjct: 101 LDG---------IYGYDISPLSVSLTRINMALIS-KTDNLEVLYKNFLCKDPLAR--KSN 148

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   + NPP+G  ++ +     K             +         F +     L+  
Sbjct: 149 LEFDVIIGNPPWGFNYDAEARQALK----------KAYVSARKKTVESFAVFTEYALKTA 198

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
            + GG  + VL  S L           +R +L+++  I+  +    D F           
Sbjct: 199 ID-GGIVSFVLPQSLLN----VKIHQPLRDYLVDHAKIKR-IRYWDDAFDGVQCPAMALT 252

Query: 410 LSNRKTEERRGKVQLINATDLWT----SIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
           L  +        ++++  +  +        +       + DD+   I  I      GK  
Sbjct: 253 LQKKHQGFEIKGIEVVTNSRTFRINIDRELDLSNWNFDLTDDEISLIKRI---ESPGKVV 309

Query: 466 RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
            + D+  F    +       +S I              ++      Q+F     K   Q 
Sbjct: 310 YLKDHADFALGIVTGDNKRFLSNIQSDDREVIYRGSDVYKYRCLPGQNFIRFEPKSFQQI 369

Query: 526 IYPYGWAESFV 536
                +     
Sbjct: 370 APIDLYRAKEK 380


>gi|329119725|ref|ZP_08248405.1| type II restriction enzyme [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464174|gb|EGF10479.1| type II restriction enzyme [Neisseria bacilliformis ATCC BAA-1200]
          Length = 503

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/262 (16%), Positives = 86/262 (32%), Gaps = 29/262 (11%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           + ++     +TP  +V            A+        R + +P+CG G FLT+ +    
Sbjct: 2   DKAKTLGQVLTPHHIVCAILDACGYSGCAVL------GRFVMEPSCGDGAFLTEIVRRYI 55

Query: 229 DCGSHHKIPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                 ++ P            G E++ +    C+A +     E+     +   I  G T
Sbjct: 56  AAAKEARMTPEQTAADLSKYIFGIEIDEDMWHKCLARLDKIVSETLGSVRVQWQIMHGDT 115

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L       + F + + NPP+           +         +F  G     D   +F   
Sbjct: 116 LHLYANYPQTFDWVIGNPPY---VRVHNLPEDTRRFIKRHFQFAVGTT---DMYPVFFET 169

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFR 400
               L+      G+   +  +S L+N    +     R +L +   ++ +  L    +F  
Sbjct: 170 AFAMLKPD----GKLGFITPNSFLYN----TSYRRFRAFLRQQGSLKTLCDLKAEKVFAG 221

Query: 401 TNIATYLWILSN-RKTEERRGK 421
            +  T + I+   RK  E    
Sbjct: 222 FSTYTAITIMDFARKNAECFDY 243


>gi|315638302|ref|ZP_07893483.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           JV21]
 gi|315481649|gb|EFU72272.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           JV21]
          Length = 1040

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 85/589 (14%), Positives = 180/589 (30%), Gaps = 81/589 (13%)

Query: 43  RLECALEPTRSAVRE--KYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRN 98
           R     + T  +     +Y        DL +   + G   SF    E++ +   + N  +
Sbjct: 199 RFFEFFKRTYESFLAIQRYGFDEFDFCDLIAQSVIYGLFVSFVENKEFAFNEDETQNFIS 258

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIAR-LEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            L     + S+       +FD    + + L+       +    +  +     +    +  
Sbjct: 259 YLPKNFKTLSELVYFSLPNFDLPEQVKQVLKNIQKTIALLDKPTMAKFLNLELEQIAI-Y 317

Query: 158 IYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYD 211
           +YE  I+ +         +    F TP+ VV +  + L  L                + D
Sbjct: 318 LYEDFIKAYDELKGTQKRKEGGVFYTPKSVVKMIVSSLDELLKSKFNKTGFNDKSVKVLD 377

Query: 212 PTCGTGGFLTDAMNHVADC---------------GSHHKIPPILVPHGQELEPETHAVCV 256
              GTG FL      + +                    K   +   +G EL    + V  
Sbjct: 378 FATGTGSFLAFVCEKILEQQHSLSQNESFKQATQNEAIKNKFLEDIYGFELSFVPYIVAR 437

Query: 257 AGML--IRRLESDPRRDLSKNIQQGSTL-----------------------SKDLFTGKR 291
             ++  +++   D   +    I   +TL                       ++D+   K 
Sbjct: 438 LKLMQILKKKGYDKVNEADFQIYLNNTLDLSNQAHYELKIPLFYLDAEWKKARDVKHDKN 497

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               L NPP+  K +     + +  K  +       +  + +  + F+     KL    +
Sbjct: 498 LLVILGNPPYNAKSKNKGKEILELLKIYKENLNETNIQPLDNDYIKFIRFSQWKLLEQGS 557

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVAL----------PTDLFFR 400
             G    ++ +S L     G     +R  L ++ D I  I+ L            ++F  
Sbjct: 558 STGLMGFIIPNSFL----DGRIHRNMRESLYKSFDEIY-ILNLHGSSEKDAKNDENVF-D 611

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSR 459
             I   + +    K E  +G      A+     I    +K  +++D  +R +  I +   
Sbjct: 612 IKIGVCISLFIKYKNEPSKGATIFY-ASTAQKGIFKRAEKYALLDDISQRGLNSIKWEEL 670

Query: 460 ENGKFSRMLDYRTFG------YRRIKVLRPL---RMSFILDKTGLARLEADITWRKLSPL 510
              +       ++F       +  +   + L   R  F +  +G+     +I  + L+  
Sbjct: 671 SPNEPYFWFVPKSFESEEYEDFWALAGDKALGDKRAIFGIYSSGIKTERDNIAIQ-LNEK 729

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
                +D    + Q      +     ++   +N    +K K      +A
Sbjct: 730 VMQKIVDDFSNLSQVQLVQKYDLKDTRDWKIANAINVIKNKLGSIEKIA 778


>gi|34541136|ref|NP_905615.1| type I restriction-modification system, M subunit [Porphyromonas
           gingivalis W83]
 gi|34397452|gb|AAQ66514.1| type I restriction-modification system, M subunit, putative
           [Porphyromonas gingivalis W83]
          Length = 1002

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/425 (14%), Positives = 114/425 (26%), Gaps = 94/425 (22%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI 114
             E   A   + +  E       Y       + +       T          F+ N   I
Sbjct: 197 YLEDKGAAKEAGLYREIRKDAESY-------FDILD-DVDATYKLFAKLQDHFNGNVFPI 248

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR-----------VMSNIYEHLI 163
            ED         LEK    +        I   P    +            ++S +YE+ +
Sbjct: 249 IEDEQSKVKKEHLEKIKKCF--ID--GDISGQPKLFENWRIFKFDFIQIELLSEVYENFL 304

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
                +  +    F TP  +V L        D    K        + DP CG+G FL ++
Sbjct: 305 GEL--DTKKEKGQFYTPYTLVELI-----LNDKLPIKNETNYNVKILDPACGSGIFLVES 357

Query: 224 MNHVADCGSHHKIPPILVP-----------HG--------------------QELEPETH 252
              +     +     ++              G                    + L P+  
Sbjct: 358 YKRLIRRWKNKNPEKVITFKELNDILVKNIFGIEIDPLAIKVTAFSLYLALVEHLNPKKL 417

Query: 253 AVCVAG----MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEK 307
            +        ++    +   +    KN+    T+ +      ++ +  + NPPFG   +K
Sbjct: 418 WIDKTNKFPYLIDNPNDISIKEKKGKNLWCRDTIGEVNPDDFEKVNLVIGNPPFGT--KK 475

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
              ++         G+            + FL              G  A++ ++  L N
Sbjct: 476 LSKSIMDYCVKYNFGKEMV---------LPFLHKSI-----EFCPDGEIALIFNTKVLTN 521

Query: 368 GRAGSGESEIRRWLLENDLIEAIVAL------PTD----LFFRTNIATYLWILSNRKTEE 417
                     R WLL  + +E +  L      P +    LF        +     +   +
Sbjct: 522 --TKKTYQNFRHWLLNENYVEKLYNLSIFRKSPRNFGGQLFTSAIGPICIIYFQAKTPPK 579

Query: 418 RRGKV 422
               +
Sbjct: 580 ASNTI 584


>gi|291522490|emb|CBK80783.1| Type I restriction-modification system methyltransferase subunit
           [Coprococcus catus GD/7]
          Length = 412

 Score = 65.8 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/388 (14%), Positives = 111/388 (28%), Gaps = 79/388 (20%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA---- 105
             R  V   +      N+  +         F +        + + N    L + I+    
Sbjct: 5   EIRQNVIALHNDLRTVNMPDQY-----KSLFVSILMLDEVEMLAKNDTEQLMADISYVIA 59

Query: 106 -SFS-DNAKAIFEDFDFSSTIARLEKAGL-----LYKICKNFSGIELHPDTVPDRVMSNI 158
             FS + A+ I E F  S T++ + +        L+   +    I+          +S  
Sbjct: 60  RRFSGEQAERISEKFTKSCTVSLIRERKSCEEYSLWWFLQQLQKIKSQLKETNMDAISLF 119

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           Y   +  + S         +TP  +      ++          +     ++ D  CGTG 
Sbjct: 120 YHVFLS-YSSGGRNSLGIVLTPEHIADFMAKVI----------NVQPGDSILDICCGTGA 168

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            L  A ++              + +G E +   + +      +R             ++ 
Sbjct: 169 LLNAASHY----------NGGGMLYGCERDEGVYDMASISQGVRYENMRLFHSDCYKLRS 218

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
               S       +    L NPP+  K   + + + +E                       
Sbjct: 219 ----SNPRLMADKG---LLNPPYAMKDHDELEFLLEEL---------------------- 249

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                   ++    G  AAIV S +              RR LLE   ++A+ ++P D+F
Sbjct: 250 --------KMIRPHGLAAAIVPSKTAYVMSEP---YITRRRQLLEEHTLKAVFSMPDDIF 298

Query: 399 FRTNIA--TYLWILSNRKTEERRGKVQL 424
                   T + +       +   K   
Sbjct: 299 NGNGATAVTCIMVFEAHVPHDPSEKTFF 326


>gi|289449477|ref|YP_003475503.1| hypothetical protein HMPREF0868_1226 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184024|gb|ADC90449.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 230

 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 19/198 (9%)

Query: 10  SLANFIWKNAEDLWGDFKHTDF---GKVILPFTLLRRL----ECALEPTRSAVREKYLAF 62
           ++ + ++   + L        F     ++L    LR +    E  +E  R  + E  L  
Sbjct: 12  NIDSILFNCRDYLRAARNSGSFFEKKDMMLTLVFLRFIGEKYEDGIEALRKTLIEHGLDP 71

Query: 63  GGSNIDLESFVKV--AGYSFYNTSEYSLSTLGST---NTRNNLESYI---ASFSDNAKAI 114
              NI    F     A  ++    E   ST+ +T        L++ +    +     K  
Sbjct: 72  DDENIRAAFFDDATFADGTYNLPVEARWSTIINTPAPKLNVALDTALSRLEAEDPQLKGC 131

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F    F++    L    +  KI    + I          ++  +YE+ ++ F    ++  
Sbjct: 132 FIKGTFTT--RNLAANDI-KKIVDEVNKISHKAFGEEKDLIGYVYEYFLKEFAVNATKEE 188

Query: 175 EDFMTPRD-VVHLATALL 191
            +F TP   VV L  A++
Sbjct: 189 GEFYTPHHDVVKLIAAMI 206


>gi|294789766|ref|ZP_06754996.1| type IIS restriction enzyme M protein [Simonsiella muelleri ATCC
           29453]
 gi|294482272|gb|EFG29969.1| type IIS restriction enzyme M protein [Simonsiella muelleri ATCC
           29453]
          Length = 312

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 124/356 (34%), Gaps = 63/356 (17%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETH 252
                ++D   G+GG L   MN +            +              G E+ PE +
Sbjct: 5   NKNSYVWDFATGSGGLLVAGMNLMLQDAKTSINSPDELRQKENQIKAEQILGIEVLPEIY 64

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            + V  M++         D S NI Q ++L+                 F  K+       
Sbjct: 65  MLAVLNMILMG-------DGSSNILQENSLTN----------------FNGKY-----GY 96

Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            KE++N     F    P  + G+ M+F+    N +       G A+I++  S    G   
Sbjct: 97  GKENQNFPADVFLLNPPYSAQGNGMIFVEKALNMMHK-----GYASIIIQDSA---GSGK 148

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDL 430
           + E   R  +L+   + A + +P DLF   +++ T +++    +  E +  V+ I+  + 
Sbjct: 149 AKEFNQR--ILQKHTLLASIKMPNDLFIGKSSVQTAIYVFKIGEPHEAKFPVKFIDFQND 206

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
                N  K +   N        + Y          ++D   FG   +K+    +  ++ 
Sbjct: 207 GYKRSNRKKAKASSNLQNIDHAEERYEE--------LVDLVKFGSGSLKLF--GQNEYVE 256

Query: 491 DKTGLA--RLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE 544
           D   L   +  AD  + +   +     L   K  +     +  A+   KE  KS +
Sbjct: 257 DTIALEGDKFGADWNFAQHKKIDAKPTLADFKKTVSDYLAWEVAQLLAKEDDKSGK 312


>gi|323669706|emb|CBJ94829.1| putative membrane protein [Salmonella bongori]
          Length = 647

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 70/193 (36%), Gaps = 25/193 (12%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +R +   +   + +   G+E  P       +  I+ +L        +     + TP +V 
Sbjct: 478 SREDANNMSRLLAEVIEGLEFCPTDF----LGQIFMNL-----ELGNTRHGQYFTPYNVC 528

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           +  + ++L    ++         T+ DP CG GG +      + + G +      ++ + 
Sbjct: 529 YTMSRMILSDRLSVLTSGERDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYC 586

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            +++P    +C   + +  + +         +  G++L+            ++ P F   
Sbjct: 587 VDIDPVAAMMCYIQLSLMGIPAI--------VATGNSLT------VAIKREMATPMFVLG 632

Query: 305 WEKDKDAVEKEHK 317
              ++   E+ H+
Sbjct: 633 HWHNRWQAERTHQ 645


>gi|57241972|ref|ZP_00369912.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           RM3195]
 gi|57017164|gb|EAL53945.1| adenine specific DNA methyltransferase [Campylobacter upsaliensis
           RM3195]
          Length = 1034

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 54/362 (14%), Positives = 104/362 (28%), Gaps = 53/362 (14%)

Query: 56  REKYLAFGGSNIDLESFVKVAGY--------SFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           ++ + +     +  E F  +           S+    +Y L  +   N  + L S   + 
Sbjct: 204 KDTFKSIEKIELKDEEFCDILAQAVVYGIFVSYIENDDYDLEKIPIENFISFLPSTFRTL 263

Query: 108 SDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           S+        F     I   LE       +        +    +    +  +YE  ++ F
Sbjct: 264 SEFVYFSVPSFSLPQDIKYTLENIKKTLALIDKVELCNILNQDLESISI-YLYEDFLKAF 322

Query: 167 ----GSEVSEGAEDFMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYDPTCGTGGFL 220
                ++  +    F TP+ VV +  + L  L                + D   GTG FL
Sbjct: 323 DELRATQKRKEGGVFYTPKSVVKMIVSSLDELLKSKFNKTGFNDKSVKVLDFATGTGSFL 382

Query: 221 TDAMNHVAD------CGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDL 272
                 +             K   +   +G EL    + V    +  ++R+       + 
Sbjct: 383 AAVFEKIISKESEVFKNETIKNKFLKDIYGFELSFVPYIVARLKLGQILRKSGFKDFSEA 442

Query: 273 SKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWEKDK 309
              I   +TL                       +KD+   K     L NPP+  K +   
Sbjct: 443 DFQIYLNNTLDLEKNANFDMFMPLVNLNQEWQKAKDVKHDKNLLVILGNPPYNAKSKNKG 502

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG------GRAAIVLSSS 363
             + +  K  +       +  + D  + F+     KL             G    + ++S
Sbjct: 503 KEILELLKIYKENLNETNIQPLDDDYIKFMRFAQWKLLEQGQKNIFEANSGLMGFITNNS 562

Query: 364 PL 365
            L
Sbjct: 563 FL 564


>gi|300869710|ref|YP_003784581.1| modification methylase BsuBI [Brachyspira pilosicoli 95/1000]
 gi|300687409|gb|ADK30080.1| modification methylase, BsuBI [Brachyspira pilosicoli 95/1000]
          Length = 406

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 49/280 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++    E  +    + TP+ +  L    L+                + DP CG+G FL  
Sbjct: 14  LKNTNIEKRKKLGQYFTPKSIRDLLLKELI------NISEKKDNVKILDPACGSGEFLLS 67

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +                HG +++    ++              +   + +I+   TL
Sbjct: 68  CREYFK----------NAHMHGFDIDESLVSISK------------KLINNADIKCLDTL 105

Query: 283 SKDLFTGKRFHYCLSNPP-FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
             D     ++ Y + NPP F  K +K++ +  K+  NG +  F            LF+  
Sbjct: 106 KFDTDKSIKYDYIIGNPPYFEFKLDKEQKSRFKDIINGRVNIFS-----------LFIKI 154

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFR 400
               L       G  A V+  S       G+  S++R +++ N  IE + +   +D F+ 
Sbjct: 155 GLELLNDD----GYLAYVVPPSM----NNGAFFSKLREYIINNSSIEYLHIVDGSDNFYM 206

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            N    L IL     ++ +  +   N   ++T  +    K
Sbjct: 207 ANQKVMLLILKKTNNKKNKKYIFSKNDITIFTEDKLFLNK 246


>gi|329123455|ref|ZP_08252019.1| type IIS restriction enzyme M protein [Haemophilus aegyptius ATCC
           11116]
 gi|327471037|gb|EGF16492.1| type IIS restriction enzyme M protein [Haemophilus aegyptius ATCC
           11116]
          Length = 686

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 104/323 (32%), Gaps = 72/323 (22%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  +    G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 345 GKLFNEMYSWLGFSQDKLNDVVLTPSYVATLLAKLARVNKDS----------YVWDFATG 394

Query: 216 TGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  AMN +            +              G E+    + + +  M++   
Sbjct: 395 SAGLLVAAMNEMLIDAKNSITSRDELRQKEAHIKAHQLLGVEILSSVYMLAILNMILMG- 453

Query: 265 ESDPRRDLSKNIQQGSTLSK---DLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                 D S N+   ++LS      F  K F     + NPP+ K+               
Sbjct: 454 ------DGSSNVLNKNSLSDFEGKGFEDKAFPADAFILNPPYSKEGNG------------ 495

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           M+F+    N +       G AA+++  S    G   + E   R 
Sbjct: 496 ----------------MIFVEKALNMMNK-----GYAAVIIQDSA---GTGKAKEINQR- 530

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+   + A + +P D+F   +++ T +++    +  E +  V+ I+ T+      +  
Sbjct: 531 -ILQKHSLIASIKMPADIFIGKSSVQTAIYVFKVGEKHEEKQLVKFIDFTNDGYKRSSRK 589

Query: 439 KKRRIINDDQRRQILDIYVSREN 461
           K +   N        + Y    +
Sbjct: 590 KAKASTNLRNVDHATERYQELVD 612


>gi|319408697|emb|CBI82352.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
          Length = 1661

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/526 (11%), Positives = 140/526 (26%), Gaps = 80/526 (15%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             +  + +       LEK    Y   K  +     P      ++  +Y+   R       E
Sbjct: 819  DVLNEANLEKESKDLEK---FYDSVKTRASGITDPQAKQSLIL-ELYDKFFRYAFPRTVE 874

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +VV      + +     F ++ G     + DP  GTG F+T  +       
Sbjct: 875  KLGIVYTPVEVVDFIINSVNEVLQTEFGQTLGSPDVHIVDPFTGTGTFITRLLQSGLIKQ 934

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAG--------------------------MLIRRLE 265
               +       H  E+    + +                              +   + E
Sbjct: 935  EEMEHKFRHEIHANEIVLLAYYIAAINIETTYHGIMGGDYVPFKKICLTDTFQLYEHKHE 994

Query: 266  SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
             +  +DL  ++ + ++  +           + NPP+    + + D  +    +    R  
Sbjct: 995  QEQGKDLFSDLMKDNSTRRSHQQNLNIRVIVGNPPYSVGQKSENDNAKNISYSKLDRRIH 1054

Query: 326  PGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES----- 375
                  S G+++  ++                 G    + ++  +               
Sbjct: 1055 ETYIAQSKGNLIRSLYDSYIRAIRWASDRIKDCGVIGFITNAGFINTRSMDGLRKCLNEE 1114

Query: 376  -----------EIRRWLLENDLIEAIVALPTDLFFRTNIAT--YLWILSNRKTEERRGKV 422
                       +IR+ +L             ++F  +   T   + IL      ++RGK+
Sbjct: 1115 FSNIYVLNLRGDIRKNMLSKGR----AQEGQNVF-GSGSMTGIAISILIKNPAAQQRGKI 1169

Query: 423  QLINATDLWTSIRNEGKKRRIINDDQRRQ------IL-DIYVSRENGKFSRMLDYRTFGY 475
               +  +  T      + +R+ +    ++      I  D +    N + S    +   G 
Sbjct: 1170 YYYDIGNNLTRKEKLSELQRLGSVGGIKREHGWQVITQDEHGDWLNKRNSDFEKFLALGN 1229

Query: 476  RRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
            ++                 L    +            +   + L   M  +  +  +E  
Sbjct: 1230 KK------------DTDLKLFETFSCGIVTNRDAWAYNSSYEALARNMSNMIAFYNSEVE 1277

Query: 536  VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEW 581
               +   +     +  A  SFI            RA       G  
Sbjct: 1278 RFNAAYLHFDHKARANALNSFINTDARKISWS--RAIKQQLAKGNI 1321


>gi|295093442|emb|CBK82533.1| Type I restriction-modification system methyltransferase subunit
           [Coprococcus sp. ART55/1]
          Length = 710

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 113/340 (33%), Gaps = 59/340 (17%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           + V+  +Y   IR   +   + A  + TP  VV    + +     +   E     + L+D
Sbjct: 185 EDVLGLLYMS-IRD--AGSRKAAGSYYTPTKVVRTLISDVTGDMGSRISEG---GKRLFD 238

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CGTG FL    + +               +  +++  +  +    + + RL      +
Sbjct: 239 PCCGTGNFLIQLPDDIELNN----------IYACDIDELSVQLARFNLALGRLSGRRHVN 288

Query: 272 LSKNIQ----------QGSTLSKDL---------FTGKRFHYCLSNPPFGKKWEKDKDAV 312
           + + I+            S    D               +   + NPP+G  ++++   +
Sbjct: 289 VDEAIRTIYEHIERRDFISEYRNDSECGGDDKKLLADPGYDIIIGNPPWGYTFDRETRTL 348

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++      GR   G+ + SD   +F+      L       G  A VL  + L       
Sbjct: 349 LRKAYRTAAGR---GV-ESSD---VFVECALKLLTDE----GVLAFVLPEALL----DVH 393

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQLINATDLW 431
               IR  + E+  +  +  L  D F+     + +  L         +G V   +  +  
Sbjct: 394 NHKTIREIIAESANVSRVSFL-GDAFYGVQCPSLVLQLEKSSDPGHSKGAVIERDGREFV 452

Query: 432 T-SIRNEGKKRR--IINDDQRRQILDIYVSRENGKFSRML 468
             + R  G +     + DD+ R +  I    EN      L
Sbjct: 453 VGTDRPLGSENFMLRLTDDEYRLLCRI----ENTDNCEFL 488


>gi|301598299|ref|ZP_07243307.1| putative restriction-modification protein [Acinetobacter baumannii
           AB059]
          Length = 212

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
            ++   +  + +E+ +++  +  +    ++ TPR +      L+          +P    
Sbjct: 117 SSIDTDIKGDAFEYFLQQ-ATATNNDLGEYFTPRHITKTIVNLV----------NPKYGE 165

Query: 208 TLYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILVPHGQEL 247
            +YDP CGTGGFLT+A +H+ D        S           G+E+
Sbjct: 166 KIYDPFCGTGGFLTEAFDHIKDNTLIANNSSEEIKLKHNTIFGREI 211


>gi|39939105|ref|NP_950871.1| type I restriction-modification system methyltransferase subunit
           [Onion yellows phytoplasma OY-M]
 gi|39722214|dbj|BAD04704.1| type I restriction-modification system methyltransferase subunit
           [Onion yellows phytoplasma OY-M]
          Length = 122

 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 38/155 (24%)

Query: 155 MSNIYEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           M  IY +LI  F S+     + + +F TP  V  L + ++        K     I  +YD
Sbjct: 1   MGEIYMYLIETFVSDNITKKQKSGEFFTPPSVSELLSQIICH------KTKNKNITKIYD 54

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L   +NH+                GQ+ +                  +    
Sbjct: 55  PFCGSGSLLLKIINHI---------NNNKDFSGQKYK------------------NDIPY 87

Query: 272 LSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKK 304
            +  I+ G TL         ++++  ++NPPFG  
Sbjct: 88  YNLKIENGDTLLFPHQSHLEQKYNIIIANPPFGTP 122


>gi|313664975|ref|YP_004046846.1| hypothetical protein MSB_A0087 [Mycoplasma leachii PG50]
 gi|312949593|gb|ADR24189.1| hypothetical protein MSB_A0087 [Mycoplasma leachii PG50]
          Length = 142

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 11/128 (8%)

Query: 4   FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFG 63
              +   L + IW++A  L  + +  ++   IL   L + L       ++        + 
Sbjct: 3   NKITKQKLGSIIWESANKLRKNLEAHEYKDYILGMLLYKFLC----EKQTNWLLSNGIWK 58

Query: 64  GSNIDLESFVKVAGYSFYNTSEYS----LSTLGSTNTRNN--LESYIASFSDNAKAIFED 117
                L++    + + F N +       +  +  +    N     Y   FS   K    +
Sbjct: 59  SDLQYLDNKFDFSNFEFDNNTTLDSVEEIQEIKQSCIDANGYFIEYRNLFSSWIKN-KNN 117

Query: 118 FDFSSTIA 125
           F+  +   
Sbjct: 118 FNIQNFQE 125


>gi|261415108|ref|YP_003248791.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261371564|gb|ACX74309.1| N-6 DNA methylase [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302325786|gb|ADL24987.1| putative type IIG restriction endonuclease and DNA modification
           methyltransferase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 894

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 122/406 (30%), Gaps = 110/406 (27%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            V +            E+ +      F N   Y        N  + L      +    K 
Sbjct: 265 KVEDFLRMKNLPEEKREAIMHELSNVFKNEDLY-----KPKNGESKLRKV---YVIVHKD 316

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I      +S +  ++  G L+ +  ++  +   PD   + V+                  
Sbjct: 317 ILP--YLTSDLPNIDFTGRLFNVLNDWVDV---PDGAENDVV------------------ 353

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ 227
               +TPR V  L   L              M   ++D   G+ GFL  AM+ +      
Sbjct: 354 ----LTPRYVTELMAKL----------TEVNMNSYVWDYATGSAGFLISAMHLMIADAKN 399

Query: 228 -----ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                 +              G E  PE + + V  M++         D S NI  G + 
Sbjct: 400 KIKSPEELRKTIAKIKAEKLLGIEKLPEIYILAVLNMILMG-------DGSSNIINGDST 452

Query: 283 SKDLF--------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
             D               +  L NPP+    +                            
Sbjct: 453 QFDGKYKQGKMKDKEFPANVFLLNPPYSAPGKG--------------------------- 485

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
            + F+    +K++      G+AA+++  +       G       + +L  + + A + + 
Sbjct: 486 -LNFVEKALSKMKS-----GKAAVLIQENAGSTQGDGYT-----KKILNKNTLIASIHMS 534

Query: 395 TDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           TDLF   +++ T +++       +    V+ I+ ++   + +N  K
Sbjct: 535 TDLFIGKSSVQTAIYVFDVGIPHDTEKLVKFIDFSNDGYARQNRKK 580


>gi|254192710|ref|ZP_04899146.1| N-6 DNA Methylase family [Burkholderia pseudomallei S13]
 gi|169649465|gb|EDS82158.1| N-6 DNA Methylase family [Burkholderia pseudomallei S13]
          Length = 872

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 113/390 (28%), Gaps = 70/390 (17%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            +S +YE  +R    +  +      TP  +V      L    D   K +      + DPT
Sbjct: 209 TLSAVYEEFLRNEAPDGVKKDGVVYTPSFLVDFVVNRL----DDEMKLNTES--KVLDPT 262

Query: 214 CGTGGFLTDAMNHVADC-----------GSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
            G+G FL  A   + +                +        G E      AV    + + 
Sbjct: 263 AGSGVFLVAAFRRIVERTLASRNLQSLPMEELRSILQNSIFGIEKSSSAAAVTAFSLYLN 322

Query: 263 RLESDPRRDLSKNIQQG------------STLSKD------LFTGKRFHYCLSNPPFGKK 304
            LE     +L   +  G            + L +D       F   RF   L NPP+   
Sbjct: 323 LLEYCSEDELLAAVHHGRRPRVFPALLDKNILVRDFFSSTNHFPSIRFTAALGNPPW--- 379

Query: 305 WEKDKDAVEKEHKN-GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                  +    +  G + R+        DG       +   L+     GG  A+V+ S 
Sbjct: 380 -----KPINDVSEYAGSIQRYAV------DGDEAAEQIVWQLLQSYLMPGGMLAMVMPSK 428

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALP---TDLFFRTNIATYLWILSNRKTEERRG 420
              +  A +  + + +       ++AIV L      LF        L  ++N        
Sbjct: 429 SFASPSAKTFATSLGQTF----HVKAIVNLSHWRRHLFANAVQPAALLFVANA-PVGHSS 483

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           +             R +      ++  +   +  I+ +    +           Y    +
Sbjct: 484 RTYFYAPMLWNQPFRPQAMWTLAVDRAEIFPLPSIF-AFAEPE------NTFDAYMLRPL 536

Query: 481 LRPLRMSFI-----LDKTGLARLEADITWR 505
            R ++            T LA L  D+  +
Sbjct: 537 ERAVKARLRHGVQSATSTTLAGLLKDLGLK 566


>gi|262065948|ref|ZP_06025560.1| type II restriction enzyme, methylase [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380354|gb|EFE87872.1| type II restriction enzyme, methylase [Fusobacterium periodonticum
           ATCC 33693]
          Length = 1011

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/431 (13%), Positives = 116/431 (26%), Gaps = 107/431 (24%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED- 176
           F     +  L     +++  K  S  +   D   +  + +I+E  I          + + 
Sbjct: 318 FKNDDVLNSLNIDDKVFEELKKISDYDFDSDLNVNI-LGHIFEQSISDIEELKKSISGEE 376

Query: 177 -------------FMTPRDVVHLATALLLDPDDALFKESPGMIR---------------- 207
                        F TP+ +        +       ++  G                   
Sbjct: 377 FDQKKSKRKKDGIFYTPQYITKYIVENSIKNWLDDKRKELGEDDLPKLNEKDYIFDIAKK 436

Query: 208 -----------------------TLYDPTCGTGGFLTDAMNHVADCGS------------ 232
                                   + DP CG+G FL  A   + +               
Sbjct: 437 NYTKNYRKHIEFWQQYREAVRNIKVIDPACGSGAFLITAFEFLLNYNKYLDDKIFDLVGT 496

Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKD 285
                   K        G +L  E+  +    + ++  + +      + NI+ G++L  D
Sbjct: 497 SDLFSDRTKEILQNNIFGVDLNKESVEITKLSLWLKTADKNKTLASLENNIKCGNSLIDD 556

Query: 286 L-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                             F    F   + NPP+       + +   E        F    
Sbjct: 557 PEIAGDLAFNWEKEFPEVFANGGFDIVVGNPPYVL----CQPSNTNEKILKFYNNFEVSS 612

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
            KI    + F   +           G  + +  ++ L N        ++R ++L N  I+
Sbjct: 613 YKIDLYHLFFEKGII-----LSKNNGYISFITPNTYLVNKYN----LKLREFILRNTQIK 663

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            I+     +F   N+     IL   K  +   K+ L   +    +     K++     D 
Sbjct: 664 EIINYKNIVFEDANVDVSTIILKKSKYTDENVKILL---SSKNENKIVLEKQQNDWLKDD 720

Query: 449 RRQILDIYVSR 459
             +I ++    
Sbjct: 721 -EKIFNLRKEF 730


>gi|307286626|ref|ZP_07566716.1| conserved domain protein [Enterococcus faecalis TX0109]
 gi|307288053|ref|ZP_07568071.1| conserved domain protein [Enterococcus faecalis TX0109]
 gi|306500967|gb|EFM70281.1| conserved domain protein [Enterococcus faecalis TX0109]
 gi|306502255|gb|EFM71537.1| conserved domain protein [Enterococcus faecalis TX0109]
          Length = 55

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEP 50
          A L   ++  A++L      +++   +L     + L   L  
Sbjct: 3  AELNQKLFSAADNLRSKMDASEYKNYLLGLIFYKYLSDRLLE 44


>gi|20089374|ref|NP_615449.1| hypothetical protein MA0485 [Methanosarcina acetivorans C2A]
 gi|19914268|gb|AAM03929.1| hypothetical protein MA_0485 [Methanosarcina acetivorans C2A]
          Length = 125

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 14/125 (11%)

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            + LF  H+   L      G +AA+ LS + LF G A  GE+ IR+ LLE   +  I+ L
Sbjct: 8   AAQLF-QHIHTLLWT----GKQAAVALSGNVLFEGGA--GET-IRKKLLEITDLHTILRL 59

Query: 394 PTDLFFRTNIATYLWILSNRKTEE--RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           PT +F+  ++ T L     +   +     +V + +    + +  N   K+  +       
Sbjct: 60  PTGIFYANSVKTNLLFFEAKSVAKEPWTKEVWIYD----YHTNVNHTLKKNPMKYSNLEN 115

Query: 452 ILDIY 456
            ++ Y
Sbjct: 116 FINCY 120


>gi|329766471|ref|ZP_08258015.1| hypothetical protein Nlim_1825 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137070|gb|EGG41362.1| hypothetical protein Nlim_1825 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 733

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 57/416 (13%), Positives = 126/416 (30%), Gaps = 86/416 (20%)

Query: 15  IWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVK 74
           +W+  + L G    +++ +++L    ++     ++ T+   +            ++   K
Sbjct: 143 LWRIFDILRGHIDASEYLEIVLTLFYVK----LIDETKFDNQIFSNLGLEKKSQIDQLSK 198

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY 134
           +      N   +SL  L                                +   E   LLY
Sbjct: 199 LFTVDESNLDTFSLEKL------------------------------EKLDPNELTNLLY 228

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
            + + FS  + +PD            + + +F  ++   +     P  V       +   
Sbjct: 229 AV-REFSISQTNPDAWN---------YAVFKFQEQLGFKSNVNSLPESVTGFIYQYITTG 278

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
            +    +   +     D    +G  + D +N + D         +     Q L      +
Sbjct: 279 GNTEDLKFRNIAFGFLD----SGKIIFDFLNFITD-DHDFSQKQLEEYAEQNLSIIEPNI 333

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                +++ L +  R  +  +I+      +D+   ++F   ++ PPF  K ++       
Sbjct: 334 TKIK-IVKLLLALSRLKVQSHIEH----PEDIHFERKFDCIVTQPPFNWKIQRATRVERN 388

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                                  F  H   K+      GG    +L  S LF+  A    
Sbjct: 389 -----------------------FENHELIKMIELVRDGGFLVAILPPSFLFSNDAR--- 422

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR----KTEERRGKVQLIN 426
              R  +  N  I  I+ LP+ +    +I   + +L  +       +   KV + +
Sbjct: 423 -NTREIISNNCYIRGIIHLPS-ILQTISIRPVMLLLQKKYADDNPIKENYKVFMSD 476


>gi|225551105|ref|ZP_03772051.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|225378920|gb|EEH01285.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
          Length = 179

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 31/179 (17%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            +      +L + IWK AE+L G     DF + +L     R +    E     + +    
Sbjct: 3   NKKEIERNNLHSTIWKIAEELRGAIDGWDFKQYVLGILFYRYIS---ENFTKYINDGERE 59

Query: 62  FGGSNIDLESFVK-----------VAGYSFYNTSEYSLST-LGSTNTRNNLESYIASF-- 107
            G  N + E+              +    FY    +  +  + +     NL   + +   
Sbjct: 60  SGDPNFNFETLNDNVVNEENRTDLIKEKGFYIKPSFLFTNVVKNAENDENLNETLETIFK 119

Query: 108 -----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD 152
                        N K +F + D ++        E+   L +I               +
Sbjct: 120 SIEESSIGYDSEKNLKGLFNNIDVNNNRLGSTTQERNKRLARILIRIKHKIFEFYFEKN 178


>gi|254976352|ref|ZP_05272824.1| putative DNA modification methylase [Clostridium difficile
           QCD-66c26]
 gi|255093737|ref|ZP_05323215.1| putative DNA modification methylase [Clostridium difficile CIP
           107932]
 gi|255315489|ref|ZP_05357072.1| putative DNA modification methylase [Clostridium difficile
           QCD-76w55]
 gi|255518152|ref|ZP_05385828.1| putative DNA modification methylase [Clostridium difficile
           QCD-97b34]
 gi|255651268|ref|ZP_05398170.1| putative DNA modification methylase [Clostridium difficile
           QCD-37x79]
 gi|260684332|ref|YP_003215617.1| putative DNA modification methylase [Clostridium difficile CD196]
 gi|260687991|ref|YP_003219125.1| putative DNA modification methylase [Clostridium difficile R20291]
 gi|260210495|emb|CBA64984.1| putative DNA modification methylase [Clostridium difficile CD196]
 gi|260214008|emb|CBE06133.1| putative DNA modification methylase [Clostridium difficile R20291]
          Length = 577

 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 106/303 (34%), Gaps = 43/303 (14%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P     +
Sbjct: 6   QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250
            D +CG G FL +  + + D                       H+       +G +++ +
Sbjct: 59  LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGADIDEK 118

Query: 251 THAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             ++    +   + +      D+  N+    +L        +F Y + NPP+    + +K
Sbjct: 119 AISILKDSLTNKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +   +      +       +D    F   + + L+     GG  +++     L    
Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGVGSVITPRYFL---- 223

Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                 ++R ++  N  ++ IV  L  ++F    +++ +     +KT+E    V  I   
Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVFKIKNE 283

Query: 429 DLW 431
           D+ 
Sbjct: 284 DIC 286


>gi|87303435|ref|ZP_01086223.1| type I restriction-modification system specificity subunit
          [Synechococcus sp. WH 5701]
 gi|87282083|gb|EAQ74045.1| type I restriction-modification system specificity subunit
          [Synechococcus sp. WH 5701]
          Length = 92

 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAV 55
             +W  A+ L  +    ++  V+L    L+ +  + E  R+ +
Sbjct: 47 EAKLWLTADKLRNNMDAAEYKHVVLGLIFLKYIAGSFEEHRAKL 90


>gi|327412865|emb|CAX67872.1| putative membrane protein [Salmonella bongori]
          Length = 647

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 70/193 (36%), Gaps = 25/193 (12%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
           +R +   +   + +   G+E  P       +  I+ +L        +     + TP +V 
Sbjct: 478 SREDANNMSRLLAEVIEGLEFCPTDF----LGQIFMNL-----ELGNTRHGQYFTPYNVC 528

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
           +  + ++L    ++         T+ DP CG GG +      + + G +      ++ + 
Sbjct: 529 YTMSRMILSDRLSVLTSGERDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYC 586

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
            +++P    +C   + +  + +         +  G++L+            ++ P F   
Sbjct: 587 VDIDPVAAMMCYIQLSLMGIPAI--------VAIGNSLT------VAIKREMATPMFVLG 632

Query: 305 WEKDKDAVEKEHK 317
              ++   E+ ++
Sbjct: 633 HWHNRWQAERTYQ 645


>gi|291568061|dbj|BAI90333.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1023

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 121/411 (29%), Gaps = 65/411 (15%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---- 103
            E   +   EK    G   +DL    +     F   +      L   +   N+       
Sbjct: 156 WEKAAAEFGEKVRGLGEKLVDLIESERQTNPKF-IDAFEGFINLCRQSINPNISDAAVEE 214

Query: 104 --IASFSDN--AKAIFEDFDF----------SSTIARL-----EKAGLLYKICKNF---- 140
             I         + IF + DF             I  L      +A  L  +   F    
Sbjct: 215 MLIQHLLTERIFRQIFNNPDFTRRNIIAVEIEKVIETLTSKSFSRAHFLGDV-DYFYRAL 273

Query: 141 --SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDA 197
             +   +   +     ++ +YE   + F  +V++      TP+ +V      +       
Sbjct: 274 EEAAATITEYSEKQHFLNTVYERFFQGFSLKVADTHGIVYTPQSIVDFMVKSVDEILRTE 333

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K        + DP  GTG F+   M  +      HK       H  E+    + +   
Sbjct: 334 FNKSLSDKGVHILDPFVGTGNFIMRIMREIRKTALSHKYQQE--LHCNEVMLLPYYIASM 391

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPP 300
            +    L +  +      I    T S       DLFT +                + NPP
Sbjct: 392 NIEHEYLTATGQYQPFDGICLVDTFSVQESLQLDLFTPENTQRVKQQQSSPIFVVIGNPP 451

Query: 301 FGKKWEKDKDAVEKEH---KNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNG 352
           +    + + D  +      + G   R      K S  +         +            
Sbjct: 452 YNAWQQNENDNNKNRKYSQRGGVDKRVAETYAKDSKATLKNSLYDPYVKAFRWAADRIED 511

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRTN 402
            G  A V ++S + +G A  G   +R+ L ++ D I  ++ L  ++   T+
Sbjct: 512 EGIVAFVSNNSFI-DGIAFDG---MRQHLAQDFDAIY-VLDLGGNIRKNTS 557


>gi|119511095|ref|ZP_01630214.1| helicase domain protein [Nodularia spumigena CCY9414]
 gi|119464266|gb|EAW45184.1| helicase domain protein [Nodularia spumigena CCY9414]
          Length = 1004

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 99/358 (27%), Gaps = 54/358 (15%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFY---------NTSEYSLSTLGSTNTRNNLESYIA 105
           V +       S        + A   F+           S + +  +   +     + ++ 
Sbjct: 164 VLDSLRDLIDSQGKNNISFEAARNKFWDICKESINPEISLFDIREMMIQHILTE-DIFLN 222

Query: 106 SFSD-----------NAKAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPD 152
            F++             + +   F F+  + R  L      Y + +  +   ++      
Sbjct: 223 IFNESQFHRENNVARELQGVISTF-FTGNLKRNTLGTIDRYYAVIRR-TAANIYNHQEKQ 280

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
           + +  +YE+  + +  + ++      TP ++V      +         K        + D
Sbjct: 281 KFLKALYENFYKAYNPKAADRLGIVYTPNEIVRFMIESVDFLVHQNFGKLLADKDVEILD 340

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  GTG F+T+ ++++      +K       H  E+    + +    +     +     +
Sbjct: 341 PATGTGTFITELIDYLPQHSLEYKYK--HEIHCNEVAILPYYIANLNIEYTYKQKMGVYE 398

Query: 272 LSKNIQQGSTLSKDLFTGKRFH---------------------YCLSNPPFGKKWEKDKD 310
             +NI    TL    F GK+                         + NPP+  K E   D
Sbjct: 399 EFENICFVDTLDHTSFAGKQMDLFAMSVENTARIKRQNDRSISVIIGNPPYNAKQENFND 458

Query: 311 AVEKEHKNGELGRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSS 363
                              K S                          G  A V +SS
Sbjct: 459 NNANRTYAAIDKLIKESYVKYSKAQNNIVLYDMYTRFIRWASDRLGKNGIIAFVSNSS 516


>gi|323486037|ref|ZP_08091368.1| hypothetical protein HMPREF9474_03119 [Clostridium symbiosum
           WAL-14163]
 gi|323400604|gb|EGA92971.1| hypothetical protein HMPREF9474_03119 [Clostridium symbiosum
           WAL-14163]
          Length = 277

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/187 (17%), Positives = 62/187 (33%), Gaps = 15/187 (8%)

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           I RL    +  K+      +E          +  +Y  L     +  +     F TP  V
Sbjct: 65  IERLGSVEIPAKMLAII--VEALERNPEQDFLGEMYMQL-----NLGNHWKGQFFTPYCV 117

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
             + + +  +  D+  ++   +  ++ DP CG G  L  A N +      H     +V  
Sbjct: 118 CKMMSEITCEDVDSHIEKQGYL--SICDPACGAGATLIAAANTMKK--CKHNFQNHVVFV 173

Query: 244 GQELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            Q+++  T  +C   + +          +   N   G  L  +   G+   Y    P F 
Sbjct: 174 AQDIDRITGMMCYIQLSLLGCAGYVCIANTITNPLTGHVLFPNEKEGQELWYM---PMFQ 230

Query: 303 KKWEKDK 309
            +    +
Sbjct: 231 NQIWTWR 237


>gi|210135639|ref|YP_002302078.1| type IIS R-M system methyltransferase [Helicobacter pylori P12]
 gi|210133607|gb|ACJ08598.1| type IIS R-M system methyltransferase [Helicobacter pylori P12]
          Length = 678

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 106/302 (35%), Gaps = 71/302 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  + R       E  +  +TP  V  L   L     D+           ++D   G
Sbjct: 344 GKLFNEMYRWLPFTEDESNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  +MN +            +              G E++P+ H + V  M++   
Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPKELEEKIIHIKAEQLLGIEVKPDIHILAVLNMILMG- 452

Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D S  I    +LS    K      + +  + NPP+                   
Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNNKEFKANAFVLNPPYSASGNG------------- 493

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M+F+     K++      G A++++ SS    G   + E  +R  
Sbjct: 494 ---------------MVFVEQALAKMQS-----GYASVIIQSS---TGSGNAKEYNVR-- 528

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE   + A + +P+DLF   +++ T++++    +  + + +V+ IN ++   +  N  K
Sbjct: 529 ILEKHTLLASIKMPSDLFIGKSSVRTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588

Query: 440 KR 441
            +
Sbjct: 589 AK 590


>gi|331703624|ref|YP_004400311.1| hypothetical protein MLC_6050 [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802179|emb|CBW54333.1| Conserved hypothetical protein, putative TYPEII DNA modification
           enzyme (Methyltransferase) [Mycoplasma mycoides subsp.
           capri LC str. 95010]
          Length = 676

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 136/414 (32%), Gaps = 81/414 (19%)

Query: 97  RNNLESYIASFS-------DNAKAIFEDFDFSSTIARLEKAG----LLYKICKNFSGI-- 143
            + L + I +F        D A  I      +    RL K       L ++         
Sbjct: 264 GDILINKINAFLKKKKIPVDKADMIVRKMKNTLLKERLNKPKNGETQLKRVFSKIVDCLG 323

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E +   +       ++  +    G    +  +  +TP  V  L   L     ++      
Sbjct: 324 EYYQIGLNTDFTGKLFNEMYSWLGYTDDKWNDVVLTPSYVGTLLVKLAKVNMNSF----- 378

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEPETH 252
                ++D   G+ G L  AMN + +        P                G E+  + +
Sbjct: 379 -----VWDFATGSAGLLVAAMNEMINDAKRKLKSPSAIEEKILHIKANQLLGIEILEDIY 433

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            + +  M++         D S NI    +L++                F   +E DK   
Sbjct: 434 MLAILNMILMG-------DGSSNILCKDSLTE----------------FNGNYEFDKS-- 468

Query: 313 EKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
              ++      F    P    G+ M+F+    + +                S +    AG
Sbjct: 469 ---YEKFPADAFVLNPPYSKQGNGMVFVERAFSMMTHGY-----------GSIIIQSSAG 514

Query: 372 SGES-EIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
           +G++ E  + +LE + + A + +P D+F   +++ T++++    +      KV+ I+ ++
Sbjct: 515 NGKATEYNKKILERNTLLASIKMPADIFGGKSSVQTHIYVFKIGEPHNNDNKVKFIDFSN 574

Query: 430 LWTSIRNEGKKRRIINDDQR-----RQILDIYVSRENGKFSRMLDYRTFGYRRI 478
                 N  K +  + D  R      +I+D+ +  E        +    GY  +
Sbjct: 575 DGYKRTNRKKAKINLLDIDRANQRYNEIVDLVLYGEEKLNIFTKNEYYEGYIDV 628


>gi|255101928|ref|ZP_05330905.1| putative DNA modification methylase [Clostridium difficile
           QCD-63q42]
 gi|255307797|ref|ZP_05351968.1| putative DNA modification methylase [Clostridium difficile ATCC
           43255]
          Length = 577

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 106/303 (34%), Gaps = 43/303 (14%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P     +
Sbjct: 6   QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250
            D +CG G FL +  + + D                       H+       +G +++ +
Sbjct: 59  LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGADIDEK 118

Query: 251 THAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             ++    +   + +      D+  N+    +L        +F Y + NPP+    + +K
Sbjct: 119 AISILKDSLTNKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +   +      +       +D    F   + + L+     GG  +++     L    
Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223

Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                 ++R ++  N  ++ IV  L  ++F    +++ +     +KT+E    V  I   
Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVFKIKNE 283

Query: 429 DLW 431
           D+ 
Sbjct: 284 DIC 286


>gi|225352841|ref|ZP_03743864.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156330|gb|EEG69899.1| hypothetical protein BIFPSEUDO_04474 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 63

 Score = 64.6 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
                G   IVL    LF G     E +IR+ L+EN  I+AI+ LP ++FF T I 
Sbjct: 1   HLRADGIMTIVLPHGVLFRGGE---EGQIRKNLIENRHIQAIIGLPANIFFGTGIP 53


>gi|126700374|ref|YP_001089271.1| putative DNA modification methylase [Clostridium difficile 630]
 gi|115251811|emb|CAJ69646.1| putative N6 adenine-specific DNA methyltransferase, N12 class
           [Clostridium difficile]
          Length = 577

 Score = 64.6 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 106/303 (34%), Gaps = 43/303 (14%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P     +
Sbjct: 6   QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250
            D +CG G FL +  + + D                       H+       +G +++ +
Sbjct: 59  LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHRHILNYCIYGADIDEK 118

Query: 251 THAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             ++    +   + +      D+  N+    +L        +F Y + NPP+    + +K
Sbjct: 119 AISILKDSLTNKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +   +      +       +D    F   + + L+     GG  +++     L    
Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223

Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                 ++R ++  N  ++ IV  L  ++F    +++ +     +KT+E    V  I   
Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFDKKKTKETYIDVFKIKNE 283

Query: 429 DLW 431
           D+ 
Sbjct: 284 DIC 286


>gi|322368519|ref|ZP_08043087.1| hypothetical protein ZOD2009_03522 [Haladaptatus paucihalophilus
           DX253]
 gi|320551803|gb|EFW93449.1| hypothetical protein ZOD2009_03522 [Haladaptatus paucihalophilus
           DX253]
          Length = 816

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 96/306 (31%), Gaps = 67/306 (21%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
              +   E   F S     +    L+ +  + +      D++  R +   YE  +     
Sbjct: 82  PELRD--ERVRFDSLSE--DANERLHALLDSLA-----YDSLSFRRLGGAYERSLDYVPE 132

Query: 169 EVSEG------------AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
               G            A  + TP +VV  A +  L   +            + DP  G+
Sbjct: 133 MEDGGIRLTGDATRRVSAGAYYTPNEVVEYAVSRALHGREDA---------RVIDPAMGS 183

Query: 217 GGFLTDAMNHVADCGSHHKIPPIL-----VPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           G FLT A++ +A+                   G +++P    +  +      +  +    
Sbjct: 184 GNFLTCAIDRLAESRDEQSERARQFVAENRIFGVDVDPLAVELARS-----AVWFETGVW 238

Query: 272 LSKNIQQGSTLSKD-------LFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELG 322
               +  G  L+ +        F G  F   + NPP+   +    ++    +E  +   G
Sbjct: 239 PDDTLVVGDALASNPEWMDVAGFDGDGFDAVVGNPPYVRSRHLPAERKDDLRERYDTVTG 298

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
            F   +P        F+  +          GGR + ++ +       A  G     R L 
Sbjct: 299 SFDLYVP--------FVERM-------AELGGRVSCIVPNKW---TTARYGRPLRNRLLD 340

Query: 383 ENDLIE 388
           E+ L+E
Sbjct: 341 EHRLVE 346


>gi|185178790|ref|ZP_02964586.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024347|ref|ZP_02997019.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518700|ref|ZP_02557181.2| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|184209410|gb|EDU06453.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188018611|gb|EDU56651.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997714|gb|EDU66811.1| type I restriction enzyme, truncation [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
          Length = 179

 Score = 64.2 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 31/179 (17%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLA 61
            +      +L + IWK AE+L G     DF + +L     R +    E     + +    
Sbjct: 3   NKKEIERNNLHSTIWKIAEELRGAIDGWDFKQYVLGILFYRYIS---ENFTKYINDGERE 59

Query: 62  FGGSNIDLESFVK-----------VAGYSFYNTSEYSLST-LGSTNTRNNLESYIASF-- 107
            G  N + E+              +    FY    +  +  + +     NL   + +   
Sbjct: 60  SGDPNFNFETLNDNVVNEENRTDLIKEKGFYIKPSFLFTNVVKNAENDENLNETLETIFK 119

Query: 108 -----------SDNAKAIFEDFDFSST---IARLEKAGLLYKICKNFSGIELHPDTVPD 152
                        N K +F D D ++        E+   L +I               +
Sbjct: 120 SIEESSIGYDSEKNLKGLFNDIDVNNNRLGSTTQERNKRLARILIRIKHKIFEFYFEKN 178


>gi|53802480|ref|YP_112803.1| hypothetical protein MCA0269 [Methylococcus capsulatus str. Bath]
 gi|53756241|gb|AAU90532.1| conserved domain protein [Methylococcus capsulatus str. Bath]
          Length = 149

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE-PTRSAVREKY 59
          MTE       L N +   A+ L G     DF   +L F  LR L    E   +  +   Y
Sbjct: 1  MTE--QEQKQLGNTLRGIADQLRGAMNADDFRDYMLSFLFLRYLSDNYEAAAKKELGTDY 58

Query: 60 LAFGGSN 66
                +
Sbjct: 59 PKLAADD 65


>gi|325478319|gb|EGC81435.1| N-6 DNA Methylase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 284

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 31/245 (12%)

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLF 287
           D     +        G E E     +    MLI         D + N+ Q S   + +  
Sbjct: 9   DTEEEREEVKRNQIFGIEYEDGAFGLSSTNMLIHG-------DGNSNVIQASMFERGEWI 61

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K  +  L NPP+    +       K  K+ +        P        F+ ++A  + 
Sbjct: 62  KDKNVNIVLMNPPYNATRKFCNPEYVKSWKSSKKE-----DPSKG---FHFVEYIARHI- 112

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIATY 406
                  + A++L           S   + ++ +L+N  ++A+ +L  ++F+   +    
Sbjct: 113 ---PANSKIAVLLPMQAAI--GNSSEVKKYKKKMLDNYTLDAVFSLTNEMFYPGASAIAC 167

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ--------RRQILDIYVS 458
             I    +  ER  +            I+ +G  R    D          + + LD+Y +
Sbjct: 168 CMIFDLSQKHERSDRETFFGYFKDDKFIKRKGLGRVEKTDSDGNSLWVSTKDEWLDLYKN 227

Query: 459 RENGK 463
           ++   
Sbjct: 228 KKEVP 232


>gi|242309003|ref|ZP_04808158.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489]
 gi|239524427|gb|EEQ64293.1| type I restriction enzyme [Helicobacter pullorum MIT 98-5489]
          Length = 542

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 97/297 (32%), Gaps = 60/297 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           D+ TP +V  L   LL                ++Y+P CG G +L               
Sbjct: 109 DYATPMEVNRLVALLL----------DLKNGESVYNPCCGLGSWLFSL------------ 146

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G+++  +   +         + +      + +++         F     +  
Sbjct: 147 KGRNFQYYGEDIHSKLIDIAR-------ILAVFMGFKNVHLEVADIFKDSAFGKLEANKA 199

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
               P   +   +      E     +  F           + FL +              
Sbjct: 200 FCYFPI--EANLNLWGFRDEALEPFIKSFS---------EVPFLAYTLKHFHQK------ 242

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A+ +  S L     G     +R++L++  L+EAI+  P ++F        L ILS +  
Sbjct: 243 -AVFIVRSLLLYKACG---ERLRKYLIKQKLLEAIIEFPRNIFPHQMEDFSLLILSKQ-- 296

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
                KV  INA +L+        K   + D     I D+Y S++N + SR++ Y  
Sbjct: 297 --ENKKVLFINAQNLFVKE----GKYNKLID--IEMICDLYFSKQNTEISRLVAYEN 345


>gi|91204872|ref|YP_537227.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|91068416|gb|ABE04138.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
          Length = 507

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 47/258 (18%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI-------ARLEKA-----GLLYK 135
           L    +    + L+ Y        K +F +    +TI       +R +KA      +  K
Sbjct: 241 LKKYNNNEINDVLQHYANVIRPKIKDLFPEGSDKTTIINGTIFVSRDQKAIDGYGTVFKK 300

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + + F       + +     S ++E  ++   S   +    F TP  VV     +     
Sbjct: 301 VLEKFRDY-GKLEHIDHDFKSKLFESFLKE--SISKKNWGQFFTPIKVVRAINEMAEGEL 357

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDA-----MNHVADCGSHHKIPPILVPHGQELEPE 250
                       ++ DP CG G F  +       N              ++   +  + +
Sbjct: 358 KEN--------MSICDPACGVGKFPLEFVKENLDNFFELKNGKINSKVKIIGFDKGFDKD 409

Query: 251 ---THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------------FH 293
              T  +  A MLI   E    +D  ++ ++ + L  D F  K               + 
Sbjct: 410 EQKTIILAKANMLIYFCE--LIKDNPEHTKEFAKLFNDSFILKTNSILGTLSEPIEGEYD 467

Query: 294 YCLSNPPFGKKWEKDKDA 311
             L+NPP+      +   
Sbjct: 468 LILTNPPYVTSGSSNLKE 485


>gi|290474498|ref|YP_003467378.1| hypothetical protein XBJ1_1462 [Xenorhabdus bovienii SS-2004]
 gi|289173811|emb|CBJ80593.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 228

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI + E+A +  +I + FS + L     P   + +++  L         +  + F TP 
Sbjct: 55  KTINKYERADV-DRIVQLFSHVVLGLAQEPGDFLGSVFMRL-----ELGDKDLQQFFTPW 108

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   + L     L +  P    TL +P CG G     A   + + G        L 
Sbjct: 109 SVARMMAQMQLQDAAGLLQTQP--FVTLCEPCCGAGCITLAAAEVLRELGHD--PLCSLW 164

Query: 242 PHGQELEPETHAVCVAGMLIRRL 264
            +  +++P    +    + +  +
Sbjct: 165 VYAIDIDPLAAVMAYIQLSLTGI 187


>gi|167465360|ref|ZP_02330449.1| putative methylase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 388

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 72/247 (29%), Gaps = 51/247 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 F TP  V      ++         E       + +P+ G+G FL     H+   
Sbjct: 33  GFNGGAFFTPTHVARFMAGVI-----RNLYEGFPENMRVLEPSVGSGVFL----EHL--- 80

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                 PP       EL+  +  V                    ++  G+ L  D     
Sbjct: 81  ------PPDAEITALELDETSARVTQ------------LIYPRADVILGNALDHDR--RD 120

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            +   + NPP+G+  E +K+      + G                  F+           
Sbjct: 121 YYDLVIGNPPYGETVETEKEYATLSKRKGIY---------RGKSEAAFIELAIKAARP-- 169

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR--TNIATYLW 408
             GG  A +L     F   A     ++R+ + E     A + LP + F    T I T + 
Sbjct: 170 --GGYIAFILPMGISFASHA----KKVRKLMYETCWQVATIMLPGETFMHTRTTIPTQII 223

Query: 409 ILSNRKT 415
           IL     
Sbjct: 224 ILRKAPP 230


>gi|313667119|gb|ADR73009.1| M.BsgI [Lysinibacillus sphaericus]
          Length = 569

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 120/368 (32%), Gaps = 65/368 (17%)

Query: 55  VREKYLAFGGSNIDLESFV--KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           + +KY  +    ++  +    +  G + +N  +  +  +   N   +    I  +     
Sbjct: 1   MLKKYTEYPSFEVNFSNAFSHEEIGKNAFNKYKNYIENIKPRNIYTSKLDIIERYKLENF 60

Query: 113 AI---FEDFDFSSTIARLEKAGLLYKICKN-----------FSGIELHPDTVPDRVMSNI 158
            I       +    I+RL+    + +I +            F  I++  +    + + + 
Sbjct: 61  LINITLSYLELKYRISRLDIISNIKEIIEYYPFQMHSEYYGFIDIDVKENKDFKKWLKDS 120

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E     F         ++ TP  ++ L          +           + DP CG+G 
Sbjct: 121 LEDF---FKEVDQREYGEYYTPEKLIRL----------SFQNLEMDTNNKVVDPACGSGF 167

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-------ESDPRRD 271
           F+ + +  + +             +G ++ P +  +     L+              +  
Sbjct: 168 FILEYLEELQNRKLLDIDTIKNNIYGFDIFPFSIIMSK---LLIGEFFVKSKKSFSGKEF 224

Query: 272 LSKNIQQGSTLS-------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
             +NI   +T+S        +  T   F   + NPPF +    DK+ +      G     
Sbjct: 225 YFENIILHNTVSSLQCKNNDNRITNLEFDLIIGNPPFFRIEPDDKNGICDCVSYGH---- 280

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  +    +F+      L+      G++ + L  S L    +G    ++R+ ++E 
Sbjct: 281 -------NYIQSIFVHWAIQHLKT----NGKSVLFLPQSML----SGFYYQKLRQEIMEK 325

Query: 385 DLIEAIVA 392
             +E I++
Sbjct: 326 CRLELIIS 333


>gi|229826486|ref|ZP_04452555.1| hypothetical protein GCWU000182_01859 [Abiotrophia defectiva ATCC
           49176]
 gi|229789356|gb|EEP25470.1| hypothetical protein GCWU000182_01859 [Abiotrophia defectiva ATCC
           49176]
          Length = 671

 Score = 64.2 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 88/271 (32%), Gaps = 41/271 (15%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + F+   ++   V   V+  +Y  L     +   +    + TP  V            D 
Sbjct: 174 ELFNVNYVYEKDVD--VIGLLYISLK---NTGERKSQGCYYTPSKVAKKIC-------DN 221

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           L        + + DP CGTG F+    +                 +G +++  +  +   
Sbjct: 222 LIIFGKTENKKILDPCCGTGNFILQIPD----------CFDYKNVYGNDIDSLSVKLARI 271

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
              +R    D     + +I +   L       ++F Y L NPP+G K+  ++        
Sbjct: 272 NYALRYKVGDKELIYN-HITELDYLYFPK--NRKFDYILGNPPWGYKYSHEEKIKLHC-- 326

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                RF        +   +F+    N L+      G  + +L  + L         + I
Sbjct: 327 -----RFNCATSLSIESYDVFIEQALNNLK----INGTLSFILPHAVLN----VKSHTPI 373

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
           R+ +LE    + I  L +  F      + + 
Sbjct: 374 RKLILEKCSFDYIEFL-SKTFDNVCCPSIIL 403


>gi|240949148|ref|ZP_04753495.1| putative type II DNA modification enzyme (methyltransferase)
           [Actinobacillus minor NM305]
 gi|240296451|gb|EER47087.1| putative type II DNA modification enzyme (methyltransferase)
           [Actinobacillus minor NM305]
          Length = 680

 Score = 64.2 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 128/419 (30%), Gaps = 109/419 (26%)

Query: 60  LAFGGSNIDLESFVKVAGYSFYN-------TSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            +           +     +F+N         +  + TL +T   +N+       S   K
Sbjct: 257 KSSEEEGNRDGEIIIRKINAFFNEKQLPQDKKDLIIRTLSNTLLTDNINKPQNGESQ-LK 315

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +F           ++  G+ YKI             +       ++  +    G    +
Sbjct: 316 RVFTKI--------VDDLGIYYKI------------GLTTDFTGKLFNEMYSWLGFTQDK 355

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV----- 227
             +  +TP  V  L   L     D+           ++D   G+ G L  AMN +     
Sbjct: 356 LNDVVLTPSYVATLLVKLARVNKDS----------YVWDFATGSAGLLVAAMNEMLKDAK 405

Query: 228 ------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                  +              G EL    + + +  M++         D S NI   ++
Sbjct: 406 EAIHSPEELRQKEAHIKAKQLLGLELLSSVYMLAILNMIMMG-------DGSSNIINKNS 458

Query: 282 LSK-----------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
           L+            D F    F   + NPP+                             
Sbjct: 459 LTDFDGKYGFGNTDDKFPADAF---VLNPPYSA--------------------------- 488

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           + +G M F+    N +       G AAI++ +S    G   + E   R  +L+   + A 
Sbjct: 489 VGNG-MNFVETALNMMNK-----GYAAIIIQNSA---GSGKAKEINQR--ILQKHTLIAS 537

Query: 391 VALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
           + +P DLF   +++ T +++    +       V+ I+ ++   +  N  K    + D  
Sbjct: 538 IKMPIDLFIGKSSVQTNIYVFKVGEKHHADEMVKFIDFSNDGYTRTNRRKASNNLKDTD 596


>gi|207110324|ref|ZP_03244486.1| type I restriction enzyme M protein [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 113

 Score = 63.8 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF  H  N L       G+ AI++ +   F       E++I R L++  L+  ++ +P+ 
Sbjct: 12  LFFQHCLNMLSHK----GKGAIIVPTG--FISAKSGVENKIVRHLVDERLVYGVICMPSQ 65

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +F  T     +       +E    +V LI+A+ L     
Sbjct: 66  VFANTGTNVSIIFFQKTPSE---DEVVLIDASKLGEEYT 101


>gi|319902461|ref|YP_004162189.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
 gi|319417492|gb|ADV44603.1| N-6 DNA methylase [Bacteroides helcogenes P 36-108]
          Length = 610

 Score = 63.8 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 88/290 (30%), Gaps = 34/290 (11%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +   +S      D      + N++E  I +             TP+ +       ++ 
Sbjct: 38  GLLVDYYSDDVPMVDIKSIEDVINVFELAIPK---AEKTKNGAVYTPKYIRDYILERVVA 94

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
                 ++S        D +CG G FL    N++           +   +G ++   +  
Sbjct: 95  TQKKTLQDS-----LAIDISCGCGAFLLSLANYLHIHCGQSYHEALQHLYGVDVSELSVK 149

Query: 254 VCVAGMLIRRL-ESDPRRDLSKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKWE 306
            C   + +  L   +   D   ++ QG++L  D            F   + NPP+     
Sbjct: 150 RCKILLSLAALQNGETLADEDFHVSQGNSLDFDFKAMPGVAENGGFDIVVGNPPY----- 204

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGS--MLFLMHLANKLELPPNGGGRAAIVLSSSP 364
             +     E     L R+     +  +    + FL    + L       G    +  +S 
Sbjct: 205 -VRAKHIDEESKALLSRWQVA--RCGNADLYLPFLEIAYSILCED----GVLGYITLNSF 257

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNR 413
             +  A    S  R     N  IE I+     L F  T   T + ++   
Sbjct: 258 FKSMNARLLRSYFRNS---NTAIE-IIDFGHQLVFGKTLAYTCIVLIDKH 303


>gi|259502899|ref|ZP_05745801.1| adenine-specific methyltransferase [Lactobacillus antri DSM 16041]
 gi|259169150|gb|EEW53645.1| adenine-specific methyltransferase [Lactobacillus antri DSM 16041]
          Length = 338

 Score = 63.8 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 47/342 (13%)

Query: 86  YSLSTLGSTNTRNNLES-YIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGI 143
           + L   G+   ++ L S Y+ +  +NA+ + +        +   E    L K+ K  +  
Sbjct: 13  FELFDQGTEILQSALRSSYLDAMLENAENVIDGRVAVEDGVPDKETVAKLEKLYKKMAFK 72

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +   +T+  +V+   +  ++R+   + +       TP  +  L   L+         +  
Sbjct: 73  DADAETI-RQVLQLSFLKVMRKDAIQANHQM----TPDTIGFLMAFLI-----EKISKLN 122

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               T++DP  GTG  LT  +N +    +       +  +G + +P    V  A + ++ 
Sbjct: 123 RPS-TIFDPAVGTGNLLTTVINQLQKASAEP-----IHGYGIDNDPAMLEVASASVALQG 176

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L  D     + N      L             +   P  +  +  +   ++ H       
Sbjct: 177 LNVDLFYQDAIN-----ALDIPECDLAVADLPIGYYPLDQNTKNYRTRAQEGHSYVHH-- 229

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                        L +    N L       G   + L  S LF            +W+  
Sbjct: 230 -------------LLIEQALNYLRP-----GGFGVFLVPSNLF---QTKEAQPFIQWMHS 268

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQL 424
              ++ ++ LP +LF   N    + +L     + ++  KV L
Sbjct: 269 VSYLQGLINLPAELFANQNAQKAILLLQRHGGDSKQAAKVLL 310


>gi|260588053|ref|ZP_05853966.1| putative adenine specific DNA methyltransferase [Blautia hansenii
           DSM 20583]
 gi|331082378|ref|ZP_08331504.1| hypothetical protein HMPREF0992_00428 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541580|gb|EEX22149.1| putative adenine specific DNA methyltransferase [Blautia hansenii
           DSM 20583]
 gi|330400864|gb|EGG80465.1| hypothetical protein HMPREF0992_00428 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 721

 Score = 63.8 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 100/298 (33%), Gaps = 46/298 (15%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             + I   E A    +   +   IE   +   D  +  IY   I        +    + T
Sbjct: 212 IRNLIDDTETAISFCRTHSSIFNIEYVYEPTEDI-LGLIY---ISCKNIGNRKATGSYYT 267

Query: 180 PRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           P  VV  L + L                  + DP CGTG FL    +H+          P
Sbjct: 268 PTKVVKNLISKLDF-----------QATPKILDPCCGTGNFLLQLPDHI----------P 306

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G +++  +  +    M ++     P   + ++I   + L++  +T   F Y + N
Sbjct: 307 FDSVFGNDIDTVSVKITRLNMALK--YDVPVSSICEHITAFNYLTE--YTNTGFRYIIGN 362

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           PP+G ++   +    ++      G+             +F+    N L    +  G  A 
Sbjct: 363 PPWGFEFSVSEKNKLRKLFKATSGKNIESY-------DIFIEQSLNHL----SDNGHLAF 411

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           +L  + L         + IR  +L+N  I+ I  L  + F        L  L   ++ 
Sbjct: 412 ILPEAILN----VKAHTNIREIILKNCSIKNIDFL-GNAFDGVQCPCILLDLQCTRSP 464


>gi|325959874|ref|YP_004291340.1| type ii site-specific deoxyribonuclease [Methanobacterium sp.
           AL-21]
 gi|325331306|gb|ADZ10368.1| Type II site-specific deoxyribonuclease [Methanobacterium sp.
           AL-21]
          Length = 1021

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 64/467 (13%), Positives = 127/467 (27%), Gaps = 120/467 (25%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         +R             E + +      YN+  +        N+  
Sbjct: 237 IFLRMGEDRGAEKYGQLRNLLDKPEIYQELCELWKEADQK--YNSGLFHFKDEKGQNSLP 294

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           ++       + + K   +D  F   I  L            +         +   ++ N+
Sbjct: 295 DI------LTPHLK--IKDGVFKQIIKNL-----------YYPDSPYEFSVLSPEILGNV 335

Query: 159 YEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +                EV +    + TP+ +V       +             
Sbjct: 336 YEQFLGKVIRLTQGHRAKIEEKPEVKKAGGVYYTPQYIVEYIVKNTVGKLCEGKTPQKVS 395

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSH----------------HKIPPILVP------- 242
              + DP CG+G FL  A N++ +                                    
Sbjct: 396 ELRILDPACGSGSFLLGAYNYLLNWHHEYYINLKNKNRLKDQIYKGKNNEWHLTVKEKKR 455

Query: 243 ------HGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGST 281
                 +G +++ +   V    +L++ LE + +                +L  NI+ G++
Sbjct: 456 ILLNNIYGVDIDHQAVEVTKLSLLLKVLEGENKDVIEAQQKLFKERALPNLEDNIKCGNS 515

Query: 282 L-----------------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKD-A 311
           L                               D+F    F   + NPP+ +     +   
Sbjct: 516 LIGPEIYDDSKFDLKQEDIKRINPFDWKNEFSDVFNNGGFDTVIGNPPYIRIQAMKEWAP 575

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           +E E    +           S G+    +    K     N  G  + +L         A 
Sbjct: 576 IEVEFYKEKYY-------SASKGNYDIYVVFVEKGLELLNEKGLMSYILPHKFF---NAK 625

Query: 372 SGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEE 417
            G  ++R  + + + +  +V      +F      T L  LS  K ++
Sbjct: 626 YG-QQLRLIISDGENLNKVVHFGDQQVFENATTYTCLLFLSKSKQKK 671


>gi|296131126|ref|YP_003638376.1| putative type II DNA modification enzyme [Cellulomonas flavigena
           DSM 20109]
 gi|296022941|gb|ADG76177.1| putative type II DNA modification enzyme [Cellulomonas flavigena
           DSM 20109]
          Length = 1322

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 82/309 (26%), Gaps = 61/309 (19%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           +      L  LG  +    L             IF+D               L    ++ 
Sbjct: 347 WQAQRLVLRRLGQDDGCPEL------ALPGLGGIFDDDGTELFTDAELPNDALLSAVRHL 400

Query: 141 SGIEL--------HPDTVPDRVMSNIYEHLIR---------------RFGSEVSEGAEDF 177
           S +              +    + +IYE L+                       +    +
Sbjct: 401 STVRPKGQPLRTVDYKNLGAEELGSIYESLLELVPRYQRTEQTFSLENLAGNDRKTTGSY 460

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGM-----IRTLYDPTCGTGGFLTDAMNHVAD--- 229
            TP  ++ L     L P     +  P         ++ DP CG+G FL  A   +A+   
Sbjct: 461 YTPSSLIDLVLDETLTPLLDEAERKPDPEAALLAMSVCDPACGSGHFLVAAARRIAERLA 520

Query: 230 --CGSHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKN 275
                     P               +G +L P    +    + +  +    P   L  +
Sbjct: 521 IVRSGEIDPTPTHLQDALYDVVGSCIYGVDLNPLAAELAKVSLWLESMRPGRPLSFLDAH 580

Query: 276 IQQGS-------TLSKDLFTGKRFHYCLS-NPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
           I+ G+        L  D      +      + PF    +K   A  +   +G+   F  G
Sbjct: 581 IKVGNALLGTTPALLADGIPDDAYVALTGDDKPFTTALKKRNKA--ERESSGDGSLFDLG 638

Query: 328 LPKISDGSM 336
               S   +
Sbjct: 639 DVGTSTIDL 647


>gi|15893273|ref|NP_360987.1| putative type I restriction enzyme M subunit [Rickettsia conorii
           str. Malish 7]
 gi|15620494|gb|AAL03888.1| type I restriction enzyme M subunit-like protein [Rickettsia
           conorii str. Malish 7]
          Length = 131

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%)

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            PF +   +K     +   +N     F  G+   ++G    ++H    L+     GGR A
Sbjct: 1   MPFSQTITKKTSKNGKTITENHITSLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW-ILSNRKT 415
           +V+    LF        + +R++LL    ++ +++LP   F   T + T +   +   K 
Sbjct: 56  LVVPEGFLFRKDT----AAVRQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFIDVHKP 111

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRI 443
             ++           +  ++N G   R 
Sbjct: 112 NNQKEY--------WFYEVKNIGVTSRQ 131


>gi|52001476|sp|P25239|T257_ECOLX RecName: Full=Type IIS restriction enzyme Eco57I; AltName:
           Full=Endonuclease Eco57I; Includes: RecName:
           Full=Adenine-specific methyltransferase activity
           Eco57IA; Short=M.Eco57IA
 gi|45157173|emb|CAA43434.3| endonuclease [Escherichia coli]
          Length = 998

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/440 (13%), Positives = 118/440 (26%), Gaps = 91/440 (20%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
             I     LR  E         +   Y      +         +    YN+  +SL  + 
Sbjct: 232 NYINSIVFLRVCEDRDLEEYETL---YHFAQDKDFQSLVKKLKSSDKKYNSGLFSLEYID 288

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTV 150
                      +++ +    +I E   F  +        + +L  I + F   ++  D +
Sbjct: 289 ---------ELLSNANSCIWSIIEQLYFPQSTYSFSVFSSDILGNIYEIFLSEKVRIDEL 339

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +  +    EH+            +   TP  +V       +        +   +     
Sbjct: 340 GNVKIQPKEEHI----------DRDVVTTPTHIVKEIIRNTVVEYCKGKSDIEILNSKFA 389

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIR 262
           D  CG+G F+ +A   + D    + I              +  + E +   +C     I 
Sbjct: 390 DIACGSGAFIIEAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFEVKREILCK---CIY 446

Query: 263 RLESDPRRDLS-----------------------------KNIQQGSTLSKDL------- 286
            ++ D     +                              NI  G++L           
Sbjct: 447 GIDKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSLIDSGDKVKQED 506

Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                    T  +F   + NPP+      +        +     R      K  D   LF
Sbjct: 507 IFSINPFDLTNYQFDVIVGNPPY---MATEHMNQLTPKELDIYKRKYKSAYKQFDKYFLF 563

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DL 397
           +      L+      G    +L               ++R++L EN  +  +++  +  +
Sbjct: 564 IERSIQILKEY----GYLGYILP----SRFIKVDAGKKLRKFLSENKYLSKLISFGSHQV 615

Query: 398 FFRTNIATYLWILSNRKTEE 417
           F      T L  L+    + 
Sbjct: 616 FKNKTTYTCLLFLNKENHDN 635


>gi|157826496|ref|YP_001495560.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
 gi|157801800|gb|ABV78523.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
          Length = 480

 Score = 63.8 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 47/258 (18%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI-------ARLEKA-----GLLYK 135
           L    +    + L+ Y        K +F +    +TI       +R +KA      +  K
Sbjct: 214 LKKYNNNEINDVLQHYANVIRPKIKDLFPEGSDKTTIINGTIFVSRDQKAIDGYGTVFKK 273

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + + F       + +     S ++E  ++   S   +    F TP  VV     +     
Sbjct: 274 VLEKFRDY-GKLEHIDHDFKSKLFESFLKE--SISKKNWGQFFTPIKVVRAINEMAEGEL 330

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDA-----MNHVADCGSHHKIPPILVPHGQELEPE 250
                       ++ DP CG G F  +       N              ++   +  + +
Sbjct: 331 K--------KNMSICDPACGVGKFPLEFVKENLDNFFELKNGKINSKVKIIGFDKGFDKD 382

Query: 251 ---THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--------------FH 293
              T  +  A MLI   E    +D  ++ ++ + L  D F  K               + 
Sbjct: 383 EQKTIILAKANMLIYFCE--LIKDNPEHTKEFAKLFNDSFILKTNSILGTLSEPIEGEYD 440

Query: 294 YCLSNPPFGKKWEKDKDA 311
             L+NPP+      +   
Sbjct: 441 LILTNPPYVTSGSSNLKE 458


>gi|302380041|ref|ZP_07268520.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302312267|gb|EFK94269.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
          Length = 154

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 16/113 (14%)

Query: 109 DNAKAIFEDFDFSSTIARL-----EKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHL 162
           D+ K +FED D  +T ++L     EK   L  I      I     +        + YE+L
Sbjct: 23  DDIKGLFEDVD--TTSSKLGATVAEKNKRLCDILTGIDKINFGKFENNDIDAFGDAYEYL 80

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              + S   +   +F T + V  L   L++D   ++ K        +YDPTCG
Sbjct: 81  TSNYASNAGKSGGEFFTLQTVSKLLAKLVMDGKTSINK--------VYDPTCG 125


>gi|262373837|ref|ZP_06067115.1| predicted protein [Acinetobacter junii SH205]
 gi|262311590|gb|EEY92676.1| predicted protein [Acinetobacter junii SH205]
          Length = 996

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/373 (14%), Positives = 103/373 (27%), Gaps = 84/373 (22%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL---HPDTVPDRVM 155
           N E Y   FS       E   F           +L         ++        VP  ++
Sbjct: 230 NSEDYNEFFSQ-IGDESEHICFELQ-------DILLATINRQMSLDWGRIQFQHVPADML 281

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           S +YEH    + +E +       TP  +  +             +        + DP+ G
Sbjct: 282 SQVYEHFAHAYQNEFARKTSIHYTPSHIAKILVDSAF----DGLEIEDKSSAQILDPSAG 337

Query: 216 TGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            G FL  A   +              +  +        G ++  E+       + +  LE
Sbjct: 338 AGVFLVLAFKRLVLEKWKITGERPTRNQIRGILNHQLVGLDINSESLKFAALSLYLTALE 397

Query: 266 SDPRRDLSKNIQQG---------STLSKDLFT-------------GKRFHYCLSNPPF-- 301
            DP+      ++            +  +DL                +RF   + NPP+  
Sbjct: 398 LDPKPTPLSELKFDGLNTKTLINVSFGEDLQETLGSLSERLPVELNERFDIVVGNPPWTK 457

Query: 302 ----GKKWEKDKDAVEKEHKNGELGR----FGPGLPKISDGSMLFLMHLANKLELPPNGG 353
               G   + ++         G   +    F  G     D  + F+       +      
Sbjct: 458 QRGRGVGEKFNELIERIAISRGIDSKVASQFNVGC----DPDIPFIWRAIEWCKP----N 509

Query: 354 GRAAIVLSSS-PLFNGRAGSGESEIRRWLLENDLIEAI----------VALPTDLFFRTN 402
           G  A  L +   LFN            ++L + L++ I          +     ++   +
Sbjct: 510 GMIAYALHAQHTLFNYGNS--------FILRSALLDCIELTGIFNGSALRQEKAIWENND 561

Query: 403 IATYLWILSNRKT 415
                 I  N+K 
Sbjct: 562 APFCFLIAKNKKP 574


>gi|212715992|ref|ZP_03324120.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum
          DSM 16992]
 gi|212661359|gb|EEB21934.1| hypothetical protein BIFCAT_00904 [Bifidobacterium catenulatum
          DSM 16992]
          Length = 73

 Score = 63.8 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 34/63 (53%)

Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLES 71
           N IW  A+ +    +  D+ K+ILPF +LRR ECALEPTR  V  +  A    + D   
Sbjct: 11 VNDIWSIADYVRDVIRPADYNKLILPFAVLRRFECALEPTRDKVLARKKAAMWDDADTGE 70

Query: 72 FVK 74
           ++
Sbjct: 71 VLE 73


>gi|308229511|gb|ADO24166.1| RM.AcuI [Acinetobacter calcoaceticus]
          Length = 1000

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 114/392 (29%), Gaps = 79/392 (20%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAK----AIFEDFDFSSTIARLEKAGLLYKICKN--F 140
           +  TL +  + N+  + I  F    +     +F+       I  +  + + + I K   +
Sbjct: 252 TYQTLLNFASSNDFSALIDKFKQADRCYNSGLFDQLLTEQIIEDI--SSVFWVIIKQLYY 309

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATA 189
                        ++ NIYE  +                  +   +   TP  +++    
Sbjct: 310 PESPYSFSVFSSDILGNIYEIFLSEKLVINQSRVELVKKPENLDRDIVTTPTFIINDILR 369

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---PHGQE 246
             + P      +   +     D  CG+G FL +    + D    + +        P G  
Sbjct: 370 NTVLPKCYGKTDIEILQLKFADIACGSGAFLLELFQLLNDTLVDYYLSSDTSQLIPTGIG 429

Query: 247 LEPETHAVCVAGML--IRRLESDPRRDLSK-----------------------------N 275
               ++ +    +L  I  ++ D     +                              N
Sbjct: 430 TYKLSYEIKRKVLLSCIFGIDKDLNAVEAAKFGLLLKLLEGEDVQSIANIRPVLPDLLDN 489

Query: 276 IQQGSTLSKDL--------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           I  G++L +                F+  +F   + NPP+    + +        +    
Sbjct: 490 ILFGNSLLEPEKVELDHQVEVNPLDFSDLKFDVIVGNPPY---MKSEDMKNITPLELPLY 546

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            +      K  D   LFL      L+      G    ++ S     G       ++R  L
Sbjct: 547 KKNYVSAYKQFDKYFLFLERGLALLKEE----GILGYIVPSKFTKVGAG----KKLRELL 598

Query: 382 LENDLIEAIVALPTD-LFFRTNIATYLWILSN 412
            +   +++IV+   + +F      T L IL  
Sbjct: 599 TDKGYLDSIVSFGANQIFQDKTTYTCLLILRK 630


>gi|328676572|gb|AEB27442.1| Adenine specific DNA methyltransferase [Francisella cf. novicida
           Fx1]
          Length = 1030

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 76/593 (12%), Positives = 170/593 (28%), Gaps = 136/593 (22%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
               V + +     +              F       L  L       N++  I    DN
Sbjct: 195 YHDEVLDTFSRQEAAE------KIPKSNPF-------LRRLFDYVAGTNIDDRIKHTVDN 241

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +F   D    +++  ++        +F                  YE  +  + S++
Sbjct: 242 LADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDSKL 283

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------------------- 208
            +    + TP+ VV      + +   + F  S G+  T                      
Sbjct: 284 RKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRAKSGYKQ 343

Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQELEPE 250
                    + DP  GTG FL +A+  + +              +   I   +G EL   
Sbjct: 344 IEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELLMA 403

Query: 251 THAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------------------SKD 285
           ++A+      ML+     +    +    +I   ++L                     +  
Sbjct: 404 SYAMAHLKLYMLLTDTGYKPKSTQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEANQ 463

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
           +         + NPP+        + ++   K+ +       +    D   +        
Sbjct: 464 IKKDTPVMVVMGNPPYSVSSSNKGEWIQDLIKDYKKNLNERKI--NLDDDYIKFTRYGQH 521

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVAL----------P 394
             +   G G  A + ++S +     G    ++R+ LLE+ D I  I+ L          P
Sbjct: 522 -YIDRTGEGVLAYISNNSFI----DGITHRQMRKSLLESFDKIY-IIDLHGNSKKKEICP 575

Query: 395 T-----DLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
                 ++F     ++  +++ +  K +    +V        +        K   +N + 
Sbjct: 576 DGSKDENVFDIMQGVSINIFVKTGVKKKGELAEVY------HYDLFGKRNYKYDFLNQND 629

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLS 508
            + I    +      +      + FG     +++     F +D   L +L +        
Sbjct: 630 LKNISWNKLEYTEPNY--FFVKKDFG-----LIKQYEKGFKIDD--LYKLGSSGIETAKD 680

Query: 509 PLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI 561
            +   F  D +  +++        +   K  I  ++   +K     S+    +
Sbjct: 681 KVIIQFTKDDINRVIEDFETLAVDDLNHKYQINIDKVNQVKNDLDNSYKTKIL 733


>gi|294792084|ref|ZP_06757232.1| type I restriction-modification system, M subunit [Veillonella
          sp. 6_1_27]
 gi|294457314|gb|EFG25676.1| type I restriction-modification system, M subunit [Veillonella
          sp. 6_1_27]
          Length = 162

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 9  ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN-- 66
          A L   ++  A+ L G      +   +L     + L   L  +   V + Y +    +  
Sbjct: 3  AELNQKLFSAADSLCGKMSADQYKDYLLGLIFYKYLSDKLLES--TVVKAYKSLDDIDTH 60

Query: 67 --IDLESFVKVAGYSF 80
                + +K+    F
Sbjct: 61 VIDKDSNLLKIKREYF 76


>gi|332665172|ref|YP_004447960.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333986|gb|AEE51087.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 621

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 100/332 (30%), Gaps = 38/332 (11%)

Query: 97  RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
            N + +Y+ S+S +     + I   F +S  +       L   I +       +      
Sbjct: 2   NNAIFTYLKSYSTDPFKVDRLIISAFLYSLDLQNTGNQFLQQYIIQKEDDDNQNLKEFLS 61

Query: 153 RVMSNIYEHLIRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
             +    E LIR F      E         TP+++         +  D L          
Sbjct: 62  IHLFTEIEELIRVFEFVISPEDKILTGAIYTPKNIRDYIFEQCFEHTDDLNNVK------ 115

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           + DP CG GGFL  A   + D      +   +   +G +++          + +  L   
Sbjct: 116 ICDPACGCGGFLYTAAKTIHDQTGKSYQTIFVDNIYGLDVQMYAINRSKLLLTLLGLTEG 175

Query: 268 PRRDLSKNIQQGSTL---SKDLFTGKR-FHYCLSNPPF--GKKWEKDKDAVEKEHKNGEL 321
              D   N+  G+ L       +   + F   + NPP+   +  + +   +  + K  E 
Sbjct: 176 ENADFEFNLDLGNALNFKWAGHYPNFQGFDIVVGNPPYVCSRNIDDESKELIFDWKVSES 235

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           G     +P        F       L      G           +           +R++ 
Sbjct: 236 GHPDLYIP--------FFQIGIENLRPQGVLGFI--------TMNTFFKSVNGRALRQYF 279

Query: 382 LENDLIEAIVALPTD-LFFRTNIATYLWILSN 412
            +  L   I+    + +F   +  T + I+  
Sbjct: 280 EDQALALKILDFGGNQVFQNKSTYTCICIIRK 311


>gi|309704637|emb|CBJ03987.1| putative type II restriction enzyme [Escherichia coli ETEC H10407]
          Length = 1004

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/440 (13%), Positives = 117/440 (26%), Gaps = 91/440 (20%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
             I     LR  E         +   Y      +         +    YN+  +SL  + 
Sbjct: 232 NYINSIVFLRVCEDRDLEEYETL---YHFAQDKDFQSLVKKLKSSDKKYNSGLFSLEYID 288

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE--KAGLLYKICKNFSGIELHPDTV 150
                      +++ +    +I E   F  +        + +L  I + F   ++  D +
Sbjct: 289 ---------ELLSNANSCIWSIIEQLYFPQSTYSFSVFSSDILGNIYEIFLSEKVRVDEL 339

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +  +    EH+            +   TP  +V       +        +   +     
Sbjct: 340 GNVKIQPKEEHI----------DRDVVTTPTHIVKEIIRNTVVEYCKGKSDIEILNSKFA 389

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIR 262
           D  CG+G F+ +A   + D    + I              +  + E +   +C     I 
Sbjct: 390 DIACGSGAFIIEAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFEVKREILCK---CIY 446

Query: 263 RLESDPRRDLS-----------------------------KNIQQGSTLSKDL------- 286
            ++ D     +                              NI  G++L           
Sbjct: 447 GIDKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSLIDSGDKVKQED 506

Query: 287 --------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                    T  +F   + NPP+      +        +     R      K  D   LF
Sbjct: 507 IFSINPFDLTNYQFDVIVGNPPY---MATEHMNQLTPKELDIYKRKYKSAYKQFDKYFLF 563

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DL 397
           +      L+      G    +L               ++R+ L EN  +  +++  +  +
Sbjct: 564 IERSIQILKDH----GYLGYILP----SRFIKVDAGKKLRKLLSENKYLSKLISFGSHQV 615

Query: 398 FFRTNIATYLWILSNRKTEE 417
           F      T L  L+    + 
Sbjct: 616 FKNKTTYTCLLFLNKENHDN 635


>gi|294783683|ref|ZP_06749007.1| hypothetical protein HMPREF0400_01677 [Fusobacterium sp. 1_1_41FAA]
 gi|294480561|gb|EFG28338.1| hypothetical protein HMPREF0400_01677 [Fusobacterium sp. 1_1_41FAA]
          Length = 627

 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 19/216 (8%)

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           ++    L  P    ++ K+ D  +  +       F   + + +    LF +   N L+  
Sbjct: 233 EKLDKILLAPSLTFEYSKN-DEEKYRNMIQNDFNFQNEILEKTSLEWLFNLLTINHLKDD 291

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
               GRA  V+  + L N +       +R++ +EN  IE+I+ LP ++   ++++  L +
Sbjct: 292 ----GRALSVVKINTLSNPKN----KNVRKYFIENGYIESIILLPENILIGSSVSLALIV 343

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKR-----RIINDDQRRQILDIYVSRENGKF 464
            S         K++ ++A++ +T  R +   R     +I+ ++  R I     S +N + 
Sbjct: 344 FSKG-----NKKIRFVDASNFYTKERRKKGDRLNPTKKILEENNIRDIFKFLNSDDNSEI 398

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           S       F      +     +  I +     +++ 
Sbjct: 399 SISKGIEEFSENDYNLDVIENIEVIPEFENSKKIKE 434


>gi|227326889|ref|ZP_03830913.1| putative type I restriction-modification system methyltransferase
           subunit [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 717

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 22/179 (12%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
           +        V   ++  +++  +R        G   ++TP  V      + +   D   +
Sbjct: 293 AKEHGTLADVSGDLLGRVFDVFLRANFESKG-GLGVYLTPNPVKQAMLEIAMHDIDDDDE 351

Query: 201 ESPGM---IRTLYDPTCGTGGFLTDAMNHVADCGS------------HHKIPPILVPHGQ 245
               +        DPTCG+ GF + A++ +                   +        G 
Sbjct: 352 MRSRLANGDFRFCDPTCGSFGFGSVALSQIDKWIDFKLVLADDKKESLKQKLRNYAFTGA 411

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           +  P    +    M ++                 ++L+        F    +NPPFG  
Sbjct: 412 DAAPRMVMLARVNMALQGAPKAQIFYT------DNSLTTKALQPNSFDLICTNPPFGTP 464



 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 31/151 (20%)

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-END------ 385
           D ++LF+      L+     GGR  IVL    L      SG+  +R +++ + D      
Sbjct: 575 DPAVLFIDRCLQLLKP----GGRLLIVLPDGIL----CNSGDRYVREYIMGKKDEKTGEF 626

Query: 386 -----LIEAIVALPTDLF--FRTNIATYLWILSNRKT---------EERRGKVQLINATD 429
                +++A+++LP+D F    T   T +  L  R            E +  V +  A  
Sbjct: 627 VGGKAIVKAVISLPSDCFKLSGTGAKTSILYLQKRHANPNQPEQFLPEPQTDVFMAVAET 686

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           L   ++N  +       +   +I+  Y   E
Sbjct: 687 LGYVVKNNIEDYNAGVANDLDKIVSAYKRGE 717


>gi|332975178|gb|EGK12078.1| hypothetical protein HMPREF0476_0077 [Kingella kingae ATCC 23330]
          Length = 505

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 84/257 (32%), Gaps = 28/257 (10%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-------T 221
             S+     +TP  +V+           ++ +      R + +P CG G FL        
Sbjct: 10  NKSKQLGQVITPAWIVNEILDACHYAGCSILR------RYVLEPACGNGAFLSEMVSRYI 63

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A                    G EL+P  +A C+  +     +     +++  I   +T
Sbjct: 64  AAAKAEQQSNEQIAAELAQYIVGVELDPVAYADCITRLNHIVQQELGLPNIAWRIHNQNT 123

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L         F + + NPP+ +    D+       +  +  RF  G     D  + F   
Sbjct: 124 LDFYRDYVGYFDWVVGNPPYIRLHRLDEA---MRARLKQQFRFTHGTT---DMYLAFFEM 177

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFR 400
               L       G+   +  +S L N    +     R++L +   + A+    ++ LF  
Sbjct: 178 AFAMLNPK----GKLGFITPNSFLHN----TSYQAFRQFLQQQGYLIALYDFKSNKLFEG 229

Query: 401 TNIATYLWILSNRKTEE 417
            +  T + I   +  + 
Sbjct: 230 FSTYTAISIFDKQHQQS 246


>gi|225619645|ref|YP_002720902.1| Modification methylase [Brachyspira hyodysenteriae WA1]
 gi|225214464|gb|ACN83198.1| Modification methylase [Brachyspira hyodysenteriae WA1]
          Length = 406

 Score = 63.1 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 49/280 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++    E  +    + TP+ +  L    L+                + DP CG+G FL  
Sbjct: 13  LKNTDIEKRKKLGQYFTPKSIRDLLLKELVY------ISEKKDNVKILDPACGSGEFLLS 66

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              +            I   +G +++    ++              +   + +I+   +L
Sbjct: 67  CNEYFK----------IPKLYGFDIDESLVSISK------------KLIKNADIKCLDSL 104

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D     ++ Y + NPP+     K    ++K+H +   GR               +  +
Sbjct: 105 KLDTKKSIKYDYVIGNPPYF--EFKPDKELKKKHNDIISGRVN-------------IFSI 149

Query: 343 ANKL-ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-VALPTDLFFR 400
             KL       GG  A V+  S       G+  S++R +++    +E + +   +D F+ 
Sbjct: 150 FIKLGLELLEDGGYLAYVVPPSM----NNGAFFSKLREYIMNISSVEYLHIVDGSDNFYM 205

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            N    L IL    + + +  +   N   ++T  +    K
Sbjct: 206 ANQKVMLLILKKTNSHKNKKYIFSKNDITIFTEDKAFLNK 245


>gi|308062175|gb|ADO04063.1| type I restriction-modification system, M subunit [Helicobacter
          pylori Cuz20]
          Length = 121

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 14/97 (14%)

Query: 1  MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---- 48
          M      A          L N IWK A +L G     DF + +L     R +   +    
Sbjct: 1  MENKNTQADKSSSLERNELHNTIWKVANELRGSVDGWDFKQYVLGILFYRYISENMAHYI 60

Query: 49 --EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
            E  +      Y        +      +    F+  
Sbjct: 61 NKEERKRDPSFDYAKLSDEEAESAKEGLIEEKGFFIP 97


>gi|311898038|dbj|BAJ30446.1| hypothetical protein KSE_46650 [Kitasatospora setae KM-6054]
          Length = 688

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 76/222 (34%), Gaps = 31/222 (13%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DP CGTGG L  A       G         V   +                    +D 
Sbjct: 208 VLDPACGTGGVLLAAPGT-ERLGQEGDPALAGVALLRLALAA--------------PADA 252

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF-GPG 327
              L  +++ G  L  D F G+     L  PP+ ++            +     R+ G  
Sbjct: 253 PGPLPLDVRPGDALRADAFPGRAADAVLCRPPYNERDWGHD-------QLQYDARWPGRL 305

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +P   +  + +++H           GG A ++L  +             +R  L+ +  +
Sbjct: 306 VPPRGESELAWVLHCLAHTRP----GGTAVLLLPPTVASRRAGR----RVRAELVRSGAL 357

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
            A+ ALP        +  ++W+L   +  +    V L++AT+
Sbjct: 358 RAVAALPAGAAPPYGVPLHVWVLRGPEPGDEFRHVLLLDATE 399


>gi|150025618|ref|YP_001296444.1| endonuclease-methyltransferase fusion protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772159|emb|CAL43635.1| Probable endonuclease-methyltransferase fusion protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 995

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 114/393 (29%), Gaps = 80/393 (20%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAK----AIFEDFDFSSTIARLEKAGLLYKICKN--FS 141
             TL    T ++  + I  FS   K     +F+    +  I  L  + + ++I K+  F 
Sbjct: 247 YQTLLQLATNDDFNALIDKFSKADKKYNSGLFDQLLSNEIIKNL--SSVFWEIIKHLYFP 304

Query: 142 GIELHPDTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATAL 190
                       ++ NIYE  +                  +   +   TP  +++     
Sbjct: 305 ESPYSFSVFSSDILGNIYEIFLSEKLSIVTGKIELIKKPENVDKDIVTTPTYIINDILRN 364

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            + P      +   ++    D +CG+G FL +    + D    + +   +    Q     
Sbjct: 365 TVIPKCKDKTDKEILLLKFADISCGSGAFLLELFQLLNDIVIDYYLKNDVTKLIQTNIDT 424

Query: 251 ---THAVCVAGML--IRRLESDPRR-----------------------------DLSKNI 276
                 +    +L  +  ++ D                                DL  NI
Sbjct: 425 YKLPFEIKKEILLNCVFGVDKDYNAVEASKFGLLLKLLEGEDVNSVNKNNPILPDLDSNI 484

Query: 277 QQGSTLSKD---------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             G++L                   F   +F   + NPP+ K   +D   +         
Sbjct: 485 FFGNSLINSSEIKENKNLEIINPYDFEDLKFDVIIGNPPYMKS--EDMKNITPIELPIYK 542

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F     K  D   LF+      L       G    ++ S     G        +R  L
Sbjct: 543 DNFKSAY-KQFDKYFLFIEQGLKLLNDD----GVLGYIVPSKFSKVGAG----KNLRELL 593

Query: 382 LENDLIEAIVALPTD-LFFRTNIATYLWILSNR 413
            +N  ++ +++   + +F      T L   S +
Sbjct: 594 SKNGNLQTLISFGANQVFKDKTTYTCLLFTSKK 626


>gi|59800800|ref|YP_207512.1| hypothetical protein NGO0356 [Neisseria gonorrhoeae FA 1090]
 gi|194098090|ref|YP_002001138.1| hypothetical protein NGK_0513 [Neisseria gonorrhoeae NCCP11945]
 gi|239998547|ref|ZP_04718471.1| hypothetical protein Ngon3_03584 [Neisseria gonorrhoeae 35/02]
 gi|240013672|ref|ZP_04720585.1| hypothetical protein NgonD_03320 [Neisseria gonorrhoeae DGI18]
 gi|240016111|ref|ZP_04722651.1| hypothetical protein NgonFA_02913 [Neisseria gonorrhoeae FA6140]
 gi|240112465|ref|ZP_04726955.1| hypothetical protein NgonM_02591 [Neisseria gonorrhoeae MS11]
 gi|240115205|ref|ZP_04729267.1| hypothetical protein NgonPID1_02968 [Neisseria gonorrhoeae PID18]
 gi|240117491|ref|ZP_04731553.1| hypothetical protein NgonPID_03376 [Neisseria gonorrhoeae PID1]
 gi|240123045|ref|ZP_04736001.1| hypothetical protein NgonP_03736 [Neisseria gonorrhoeae PID332]
 gi|240125298|ref|ZP_04738184.1| hypothetical protein NgonSK_03603 [Neisseria gonorrhoeae SK-92-679]
 gi|240127751|ref|ZP_04740412.1| hypothetical protein NgonS_03775 [Neisseria gonorrhoeae SK-93-1035]
 gi|260440977|ref|ZP_05794793.1| hypothetical protein NgonDG_07826 [Neisseria gonorrhoeae DGI2]
 gi|268594405|ref|ZP_06128572.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268596402|ref|ZP_06130569.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598533|ref|ZP_06132700.1| N-6 DNA methylase [Neisseria gonorrhoeae MS11]
 gi|268600885|ref|ZP_06135052.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|268603191|ref|ZP_06137358.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268681672|ref|ZP_06148534.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
 gi|268683899|ref|ZP_06150761.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268686142|ref|ZP_06153004.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044305|ref|ZP_06570014.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399496|ref|ZP_06643649.1| hypothetical protein NGNG_01480 [Neisseria gonorrhoeae F62]
 gi|59717695|gb|AAW89100.1| hypothetical protein NGO0356 [Neisseria gonorrhoeae FA 1090]
 gi|193933380|gb|ACF29204.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|268547794|gb|EEZ43212.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268550190|gb|EEZ45209.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582664|gb|EEZ47340.1| N-6 DNA methylase [Neisseria gonorrhoeae MS11]
 gi|268585016|gb|EEZ49692.1| N-6 DNA methylase [Neisseria gonorrhoeae PID18]
 gi|268587322|gb|EEZ51998.1| N-6 DNA methylase [Neisseria gonorrhoeae PID1]
 gi|268621956|gb|EEZ54356.1| N-6 DNA methylase [Neisseria gonorrhoeae PID332]
 gi|268624183|gb|EEZ56583.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-92-679]
 gi|268626426|gb|EEZ58826.1| N-6 DNA methylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011199|gb|EFE03195.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610065|gb|EFF39187.1| hypothetical protein NGNG_01480 [Neisseria gonorrhoeae F62]
 gi|317163822|gb|ADV07363.1| hypothetical protein NGTW08_0391 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 274

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 36/169 (21%)

Query: 251 THAVCVAGMLIRR-LESDPRRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKWEK 307
             A+  + M++R   +++  +           +         KR +    NPP+ +    
Sbjct: 1   MFALAASNMILRGDGKANLHQSSCFMTDFQDLIKNPKPETGLKRPNVGFLNPPYAQS--- 57

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                                   SD  +  L  +   L++   GG   AI+  S  +  
Sbjct: 58  -----------------------KSDAELHELYFVKEMLDMLAEGGTGIAIIPVSCVIAP 94

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
            +A S        +++   ++A++++P++LF+     T + +    K  
Sbjct: 95  SKAKS-------EIVKYHRLKAVMSMPSELFYPVGTVTCIVVFEAHKPH 136


>gi|296132848|ref|YP_003640095.1| putative RNA methylase [Thermincola sp. JR]
 gi|296031426|gb|ADG82194.1| putative RNA methylase [Thermincola potens JR]
          Length = 689

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 76/499 (15%), Positives = 143/499 (28%), Gaps = 84/499 (16%)

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVM-SNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
             L  +  L  + K F   + +       V+   I+E  + +      +    + TP  V
Sbjct: 79  ENLMDSIALEVVEKFFGERDNYLTKHEFPVILGLIHECFLEK--KNQRKPTGIYYTPEPV 136

Query: 184 VHLATALLLDPDDALFKESPGMIR----------------TLYDPTCGTGGFLT-DAMNH 226
           VH      L    A         R                 + DP CG+G FL      +
Sbjct: 137 VHYMVNRTLQAFFADLLNKIRKDRADYRILQEHLTKLKNHAVIDPACGSGAFLVYIFRQY 196

Query: 227 VADCGSHHKIP-------------------------PILVPHGQELEPETHAVCVAGMLI 261
           +       +I                                G +++P+   +    +  
Sbjct: 197 LKFYQQLGEIFSSATPLSGEVRQGNVVVPENLSSHIMDNHIRGIDVDPDAVRLTRLALYY 256

Query: 262 RRLESDPRRDLSK------NIQQGSTLSKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVE 313
             +                 +Q  +TL        ++   + NPP+   K          
Sbjct: 257 YGINHCAGDFKGFLKSLEVAVQWSNTLEISPERRVKYDLVIGNPPYIANKSIPAGLKKNI 316

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           KE       +F   +P        F+      L+     GG  + ++S+  +        
Sbjct: 317 KELFPTATSQFDSIVP--------FMEFGIKSLKP----GGILSYIVSNKFMVADYGI-- 362

Query: 374 ESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
             E+RR +L+   ++ +V + +  +F   +I   + IL NR   +    V +I+   L  
Sbjct: 363 --ELRRLMLKETTLKKLVDVSSQKIFADASIYPVILILENRAPGKNS-VVTIIDGIVL-- 417

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK 492
                  K    N +   Q  D +++      S  +              P R++     
Sbjct: 418 ---PGKNKIEEQNPNTIPQ--DFFLNLGPSLISTGISRGILPVIEKINAWPGRLNTKDIH 472

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA 552
            G+A            P  ++ W  IL  +   I  Y   E+    S      +  K+  
Sbjct: 473 CGIATAGFGKHITS-EPDKKTEWFRIL--LAGDINNYRVKETEKFISAVHVSKQQNKLF- 528

Query: 553 SKSFIVAFINAFGRKDPRA 571
               I   +    R+   A
Sbjct: 529 --REIKLVVPGIARRLKAA 545


>gi|217034514|ref|ZP_03439925.1| hypothetical protein HP9810_873g30 [Helicobacter pylori 98-10]
 gi|216943055|gb|EEC22534.1| hypothetical protein HP9810_873g30 [Helicobacter pylori 98-10]
          Length = 75

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 1  MTEFTGSA--------ASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLE 45
          M      A          L N IWK A +L G     DF + IL     R + 
Sbjct: 1  MENKNTQAPKSSSLERNELHNTIWKIANELRGSVDGWDFKQYILGILFYRYIS 53


>gi|300813794|ref|ZP_07094101.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300512084|gb|EFK39277.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 86

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
          M E   +       IW  A  LWG     ++ KVI+    LR +  A E   + +  +  
Sbjct: 1  MAEKNNANIGFEKQIWDAACVLWGHIPAAEYRKVIIGLIFLRYISSAFERKYNELVAE-- 58

Query: 61 AFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
             G   + +    +    F+     +L +L
Sbjct: 59 ---GEGFEEDRDEYLGENIFFVPEN-TLQSL 85


>gi|110598200|ref|ZP_01386477.1| hypothetical protein CferDRAFT_0756 [Chlorobium ferrooxidans DSM
           13031]
 gi|110340214|gb|EAT58712.1| hypothetical protein CferDRAFT_0756 [Chlorobium ferrooxidans DSM
           13031]
          Length = 1304

 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 85/346 (24%), Gaps = 60/346 (17%)

Query: 31  FGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
           +   IL   ++         T+    ++          +E   K+A    Y         
Sbjct: 288 YR--ILFLIVIEERNLVYAETKDEELQRQRKLYYDYYSIERLRKLAAKLHYIDGR---KH 342

Query: 91  LGSTNTRNNLESYIASF-------SDNAKAIFEDFDFSSTIARLE-KAGLLYKICKNFSG 142
                 +     +   F             IF        +  L      L K+ +  + 
Sbjct: 343 DLWQGLKATFRLFEDGFYGERLGIKPLGSGIFSAVAL-GQLPTLSLSNEALLKVIRRLTF 401

Query: 143 IELHPDTV--------PDRVMSNIYEHLIRRFGS---------------EVSEGAEDFMT 179
            E                    ++YE L+                    +    +    T
Sbjct: 402 FENEQKQQVRVNYSDLDVEEFGSVYEGLLEYDAEFREINGITHFTFKEGKGRSESGAHYT 461

Query: 180 PRDVVH-LATALLLDPDDALFKESPGM----IRTLYDPTCGTGGFLTDAMNHVA------ 228
           P ++V  L    L    +   K +          + D  CG+G  L  A   +A      
Sbjct: 462 PEELVKPLIKYSLDYVIEERLKAANPEQSLLSIRVCDVACGSGHILLSAARKIAIEVARV 521

Query: 229 ----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQ 277
                           +       +G +  P    +C   + +      +P   L  +I+
Sbjct: 522 RTKEEQPSPTAMRHALRDVIRTCIYGVDKNPLAVNLCKVALWLEAHNPGEPLNFLDHHIK 581

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            G  +       + F   +++  F      DK       K  ++ R
Sbjct: 582 CGDAIVGLAHQEELFR-GIADEAFKALPGDDKLIASALAKRNKIER 626


>gi|307269754|ref|ZP_07551084.1| type III restriction enzyme, res subunit [Enterococcus faecalis
            TX4248]
 gi|306513864|gb|EFM82466.1| type III restriction enzyme, res subunit [Enterococcus faecalis
            TX4248]
          Length = 1567

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 95/311 (30%), Gaps = 39/311 (12%)

Query: 108  SDNAKAIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            S+    I E+   F       ++    Y   K  +    + +     ++  +Y+    + 
Sbjct: 787  SEAMDKIVEELSRFGGFNKEQDELKEFYDSVKLRAEGIDNAEAKQRIII-TLYDKFFSKG 845

Query: 167  GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMN 225
              E ++      TP +VV      + D     F K        + DP  GTG F+   ++
Sbjct: 846  FKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKAIEDEGVHILDPFTGTGTFIVRTLH 905

Query: 226  HVADC-------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQ 277
            ++ D         +          H  E+   ++ +    +     E + +     + I 
Sbjct: 906  YLKDKLAKGEITLADITRKYTQELHANEIVLLSYYIAAINIESTFAEMNHQEYKPFEGIV 965

Query: 278  QGSTLS----KDLFTGKRFH---------------YCLSNPPFGKKWEKDKDAVEKEHKN 318
               T      +D      F                  + NPP+  K + +     +    
Sbjct: 966  LTDTFESTEQEDTLDDTFFRTNDERLKRQQEVPVKVIMGNPPYSAKQKNEDGNQIRTAYE 1025

Query: 319  GELG---RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                    F       ++ + LF  ++          +  G    + ++S + +G A  G
Sbjct: 1026 KLDSSLQTFWVKTSTATNKNNLFDSYIRAMRWSSNRISDNGVIGFITNNSFI-DGNAMDG 1084

Query: 374  ESEIRRWLLEN 384
               +R+ LLE 
Sbjct: 1085 ---MRKSLLEE 1092


>gi|116688241|ref|YP_833864.1| N-6 DNA methylase [Burkholderia cenocepacia HI2424]
 gi|116646330|gb|ABK06971.1| N-6 DNA methylase [Burkholderia cenocepacia HI2424]
          Length = 578

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 70/234 (29%), Gaps = 33/234 (14%)

Query: 167 GSEVSEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           G E  +    F TP  +   L   L     D         +R   DP CG   FL     
Sbjct: 91  GEERRKQLAMFFTPPSLTKRLLDDLSASGVDFS-------VRKFCDPACGGAAFLAPIAM 143

Query: 226 HVADCGSHHKIPPILVPHGQELE----PETHAVCVAG-----MLIRRLESDPRRDLSKNI 276
            + D           +    +       +  A+C        M++              I
Sbjct: 144 RMRDALRERGTSATQILDHVQRHLLGFDKDAALCEMSKHFLLMVLHDEVVATGARPKFQI 203

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG +L +           + NPPF K    +     +         F   +    +   
Sbjct: 204 HQGDSLIRAQSLLGALDVVVCNPPFRKMPSAEVAHYLEH--------FADIIEAQPNLYA 255

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           LF+      L      GG  A+V  +S L    +G   S++R +LL    + +I
Sbjct: 256 LFMALCVKLLAP----GGTCALVTPTSFL----SGQYFSKLRTFLLTQANVLSI 301


>gi|303241443|ref|ZP_07327946.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
 gi|302591052|gb|EFL60797.1| N-6 DNA methylase [Acetivibrio cellulolyticus CD2]
          Length = 2215

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/411 (14%), Positives = 117/411 (28%), Gaps = 81/411 (19%)

Query: 43  RLECALEP--TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
            L+  LE       ++    +        E       Y+  + ++ +             
Sbjct: 550 FLDKPLEEQGNYDNLKNDNNSLEAEENQEEILSTDEKYNEDSPNKINFQY------SERY 603

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVPDRVM 155
             Y        K   E       + R+E    L       +   + G     +   D V 
Sbjct: 604 NLYPNGAKTKYKNNIEAIKM---LKRIESENRLADHDEQIVLARYVGWGGLANAFSDTVT 660

Query: 156 S--NIYEHLI-----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              N Y+ L      + +    +     + T  D++      +       F  + G  R 
Sbjct: 661 GWENEYQELKHLLDEKEYEDARNSTITAYYTEPDLIKHMYNAI-----RQFGFAGGKNRK 715

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DP  GTG F +   + + D             +G E++  T  +     L ++ E   
Sbjct: 716 ILDPAMGTGNFFSVLPDGLKDTA----------IYGVEIDSITGRIAKQ--LYQKGEISV 763

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +   + N           +    F   L N PF      DK   E++    +        
Sbjct: 764 QGYETTN-----------YEDNSFDIILGNIPFNNIKLYDKRYAEEDFLIHDY------- 805

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                    F+    + L+     GG    + S   +        ++++R ++ E   + 
Sbjct: 806 ---------FIAKSLDLLKP----GGIIGFITSKGTM-----DKKDTKVREYIAERADLI 847

Query: 389 AIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
             + LP + F     T +   +       +     K  L +   ++T  R 
Sbjct: 848 GAIRLPNNAFKALAGTEVTADILFFQKYSSPRNLDKFSLPD--WVFTDTRK 896


>gi|331669721|ref|ZP_08370567.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
 gi|331063389|gb|EGI35302.1| type I restriction-modification system, M subunit [Escherichia coli
           TA271]
          Length = 203

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW 408
              GGR+A ++    LF   +      +R+ L+E++ +EA++ LP+ +F     +AT + 
Sbjct: 2   LKVGGRSATIVPQGVLF--GSSKAHQSLRKTLVEDNQLEAVINLPSGVFKPYAGVATAIL 59

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           I +      +  +V   +  +      +   KR  I D+    +L  +   
Sbjct: 60  IFTKG---GQTDEVWFYDLQNDGY---SLDDKRNPIKDNDLPHLLASWKHY 104


>gi|255316512|ref|ZP_05358095.1| restriction modification system DNA specificity subunit
           [Clostridium difficile QCD-76w55]
          Length = 282

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 68/329 (20%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDP 194
            ++   +    +    RV++     +I+   +          F TP  V++         
Sbjct: 9   IEDNRKVSNLLEESRRRVLNEEEIEIIKNMHTGYGGISNNTQFFTPEVVINYML------ 62

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                + +      + +P+CG G F+           +       +     EL  E H +
Sbjct: 63  --DSLEATGFKGGKILEPSCGNGKFV----------NALISKFENVEITSVELNNELHYL 110

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                       +     + N   G  L        +F   + NPPFGK  ++D      
Sbjct: 111 ------------NKICYPNVNTINGDCLEYLKEFEGKFDLVIGNPPFGKSCKRDG----- 153

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                    F  G    S     F       L+     GG   +VL  S L +       
Sbjct: 154 ---------FEFG---KSSLESYFFELSLRALKE----GGSLIMVLPDSILSS----KKY 193

Query: 375 SEIRRWLLENDLIEAIVALPTDL--FFRTNIATYLWILSNRKTEERRGKVQLINATDLWT 432
             +R++ ++N  I   ++LPT    F+ T++ T +  L  +K    +     +   D   
Sbjct: 194 FNLRKFTVDNFRIIQSISLPTTTFYFYGTSVKTSILHL-KKKDCNNKDYSIFMGIVDKIG 252

Query: 433 SIRNEGKKRRIINDDQRRQILDIYVSREN 461
                 K    +        +  Y   + 
Sbjct: 253 WDSKGNKNENEL--------ISAYHEFKE 273


>gi|29347999|ref|NP_811502.1| type I restriction enzyme, M subunit [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339901|gb|AAO77696.1| type I restriction enzyme, M subunit [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 256

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 24/186 (12%)

Query: 91  LGSTNTRNNLESYI-ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           L   N  N+  +YI   FS  A    +++ +   +  ++   +L    +  +       +
Sbjct: 26  LDPVNVFNDFLTYIIHGFSPGAPP-LQNWKYKR-LQNMKFMEMLTGWVQLMASRIKDDTS 83

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D    ++Y  L+ +   +       F TP  +  L        +           + +
Sbjct: 84  WYDP-FGDLYMALVSKSAQQS---QGQFFTPVHICDLMVLCTQTEEKMT-------GQRM 132

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            DPTCG+G  L            +H   P     G+++      + V  MLI     +  
Sbjct: 133 GDPTCGSGRLLLA----------YHARNPENYLIGEDINRTCCLMTVCNMLIHGCVGEVI 182

Query: 270 RDLSKN 275
              S N
Sbjct: 183 CHDSLN 188


>gi|317178177|dbj|BAJ55966.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16]
          Length = 676

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 104/302 (34%), Gaps = 71/302 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  + R       +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 342 GKLFNEMYRWLDFTKDQLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 391

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  +MN +            +              G E+  + H + V  M++   
Sbjct: 392 SAGLLVASMNLMIEDAKRCITSPKELEQKIVHIKAKQLLGIEIRQDIHTLAVLNMILMG- 450

Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D S  I    +LS    K      + +  + NPP+    +              
Sbjct: 451 ------DGSSQILNQDSLSGFDGKVNNEAFKANAFVLNPPYSASGKG------------- 491

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M+F+     K++      G A++++ SS    G   + E  +R  
Sbjct: 492 ---------------MVFVEQALEKMQS-----GYASVIIQSS---TGSGKAKEYNVR-- 526

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++   +  N  K
Sbjct: 527 ILEKHTLLASIKMPLDLFIGKSSVHTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 586

Query: 440 KR 441
            +
Sbjct: 587 AK 588


>gi|153870743|ref|ZP_02000078.1| helicase domain protein [Beggiatoa sp. PS]
 gi|152072790|gb|EDN69921.1| helicase domain protein [Beggiatoa sp. PS]
          Length = 815

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 73/258 (28%), Gaps = 32/258 (12%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRT 208
                ++ IYE   + F  +V++      TP+ +V      + +     F K        
Sbjct: 71  YKQHFLNTIYERFFQGFSIKVADTHGIVYTPQPIVDFMVRSVEEILQREFGKSLVDKGVH 130

Query: 209 LYDPTCGTGGFLTDAMNHVADCGS-HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           + DP  GTG F+T  +  +   G            H  E+    + +    +  + LE  
Sbjct: 131 ILDPFVGTGNFITRIIQEIRTHGKMKLDYKYRHELHCNEIMLLPYYLACMNIEHQYLELM 190

Query: 268 PRRDLSKNIQQGSTL-----------------SKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            R    + I    T                           F   + NPP+      + D
Sbjct: 191 GRYRPYEGICLADTFELAENKQKELFVPENTERVKQQQKSEFFVIIGNPPYNAWQANEND 250

Query: 311 AVEKEHKNGELGRFGPGLPKISDG------SMLFLMHL-ANKLELPPNGGGRAAIVLSSS 363
             +                K S        S  ++  +    + +     G  A V ++ 
Sbjct: 251 NNKNRLYKTVDNWVRDTYAKDSKATNKNALSDPYVKAIKWASMRIKNE--GMVAFVTNNG 308

Query: 364 PLFNGRAGSGESEIRRWL 381
            L N         +R+ L
Sbjct: 309 FLDNIAFEG----MRKHL 322


>gi|34763072|ref|ZP_00144045.1| Restriction enzyme BcgI alpha subunit [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887271|gb|EAA24369.1| Restriction enzyme BcgI alpha subunit [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 800

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/426 (15%), Positives = 121/426 (28%), Gaps = 70/426 (16%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           ++ + +T    N    I    D      E F F++    +  + + Y +  N        
Sbjct: 239 INRIMNTTLLTNYNESILKEWDAKDKSEEKF-FANGADTIL-SRVTYSLYNNIIKKYEKY 296

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 +M   Y   +  +     +     +TP  +  L   +          +      
Sbjct: 297 RDKGIDIMGTFYSLFLVYYA--SDKKKGIVLTPNHITSLFCDIAEYFRGKPIDKET---- 350

Query: 208 TLYDPTCGTGGFLTDAMNHV------------ADCGSHHKIPPILVPHGQELEPETHAVC 255
            + D   G+GGFL  A+N++            +   +  K        G E  P    + 
Sbjct: 351 IILDICTGSGGFLIAALNYIDKSIDEDDTLTESQKQNEKKKARKNCLIGVEQAPSMFMLA 410

Query: 256 VAGMLIRRLE---SDPRRDLSKNIQQGS-TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
            A M               L  N+  G  T   +L     F   L      K  E   + 
Sbjct: 411 YANMNFHGDGSSRLYNLNSLLSNVYDGEQTFGSELCKLYDFDGSLRK-KITKDIEGKIEK 469

Query: 312 VEKEHKNGELGRFGPGL----------------PKISDGSMLFLMHLANKLELPPNGGGR 355
            +KE       R    +                P            +  +L+    GG  
Sbjct: 470 NKKEEDKDYENRIRDLVIAELFKKNGADIGMINPPYGK-DFNEYDFINAELKYLKEGGIG 528

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-----TNIATYLWIL 410
            AIV    P+ N  A   + +I   LLEN  + A + +P  LF        ++ T + + 
Sbjct: 529 LAIV----PVSNQGASKDKDKI--ALLENHSLLASILMPLQLFTNICNSGASVGTCILVF 582

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
              +      K  L +    + +            +D   +I+  +   E+         
Sbjct: 583 KAHQPH----KYFLEDGGRTFLA---------DWREDGF-KIIAKHGRFEDK---NRWFT 625

Query: 471 RTFGYR 476
              GYR
Sbjct: 626 ANTGYR 631


>gi|33152056|ref|NP_873409.1| type I restriction enzyme M subunit [Haemophilus ducreyi 35000HP]
 gi|33148278|gb|AAP95798.1| possible type I restriction enzyme M subunit [Haemophilus ducreyi
           35000HP]
          Length = 252

 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 75/227 (33%), Gaps = 30/227 (13%)

Query: 100 LESYIASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           LE Y+A +S +A   + + +  + +    ++   L ++   F  I    +      +  +
Sbjct: 34  LEFYLAIYSKHANEQLVKRYQTAVSHYTAKEKQQLSQL---FVIIINALEQKTYDFLGTV 90

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  L              + TP  +     A+ L    ++ +        L +PTCG+G 
Sbjct: 91  FMAL-----DLSDGYKGQYFTPPHIAQAMAAMTLMDCHSIIE--KRGFMKLQEPTCGSGV 143

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            +  + NH+     H      L    Q+L+  T  +C   M +  +  +     +   + 
Sbjct: 144 MIIGSYNHLRQ--EHFNPQQQLWVRAQDLDFTTAMMCYIQMTLLHIPGEVIIGNTLTDEV 201

Query: 279 GSTLSKDLF-----------------TGKRFHYCLSNPPFGKKWEKD 308
              L                        +     ++NPPF   WE +
Sbjct: 202 CYHLYTPAHILGNGTMRLNNMTESEVEAQHNTDTVNNPPFEIDWETE 248


>gi|34581060|ref|ZP_00142540.1| hypothetical type I restriction enzyme M subunit [Rickettsia
           sibirica 246]
 gi|28262445|gb|EAA25949.1| hypothetical type I restriction enzyme M subunit [Rickettsia
           sibirica 246]
          Length = 131

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 20/143 (13%)

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            PF +   +K     +   +N     F  G+   ++G    ++H    L+     GGR A
Sbjct: 1   MPFSQIITKKTSKNGKTITENHITSLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLW-ILSNRKT 415
           +V+    LF        + +R++LL    ++ +++LP   F   T + T +   +   K 
Sbjct: 56  LVVPEGFLFRKDT----AAVRQFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFIDVHKP 111

Query: 416 EERRGKVQLINATDLWTSIRNEG 438
             ++           +  ++N G
Sbjct: 112 NNQKEY--------WFYEVKNIG 126


>gi|325564132|gb|ADZ31420.1| M.SfcI [Enterococcus faecium]
          Length = 606

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 91/250 (36%), Gaps = 30/250 (12%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                 TP+ +        L+        S     T+ DP CG G FL  A  ++++   
Sbjct: 79  ENGIVFTPKYIADYIVDQTLNSI-----PSWSEEITILDPGCGGGIFLVSAAQYISEKFG 133

Query: 233 HH-KIPPILVPHGQELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTLSKDL---F 287
              +       +G ++E E    C   + ++       + DLS NI    +L ++    F
Sbjct: 134 VPLEKVIKHNIYGLDIESENVRRCRIVLDVLLEQSGSGKLDLSSNILCVDSLRENWGYLF 193

Query: 288 TGKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             ++ ++ + NPP+       ++    ++ E    ++G F             F+    N
Sbjct: 194 GERKINFVIGNPPYVNAHDMSKETVKRLKNEFITTKVGTFNIF--------YAFVEKAMN 245

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNI 403
           +L+      G+   ++ ++ L    A     ++R +L  N  +  I+    ++ F     
Sbjct: 246 ELDYE----GQVGFIVPNNFLSITAAT----DLRHFLQSNKYLMKIIDFSDNMVFKPVRT 297

Query: 404 ATYLWILSNR 413
              +  LS +
Sbjct: 298 YNCILQLSKK 307


>gi|310831505|ref|YP_003970148.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
 gi|309386689|gb|ADO67549.1| putative type I restriction modification enzyme, M and S domains
           [Cafeteria roenbergensis virus BV-PW1]
          Length = 977

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 74/203 (36%), Gaps = 21/203 (10%)

Query: 114 IFEDFDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           IF +   ++ + ++            L+ ++    + +      +  ++   IYE+ + R
Sbjct: 168 IFSEIYENNKVNKMLVCEIPESATPYLIKELVFKVNNLIKKEQDMDFQLAGKIYEYFVGR 227

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             S +      + T R +    T  + +   +   +  G + T+ DP  G+GGF    ++
Sbjct: 228 DQSAI-SELGAYFTDRHI----TDYIYENIHSPILDDKGNVETMVDPFGGSGGFTLGYIS 282

Query: 226 HVADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           ++ +   +      L   +  ++  +     +  M             S++++  ++   
Sbjct: 283 YLKNKYQNINWTTDLSKIYHFDMNLDVVKYAMLEMY----CLTGEFPQSEHLRTINSFKD 338

Query: 285 D---LFTGKRFHYCLSNPPFGKK 304
           D        +F    +NPP+G  
Sbjct: 339 DFKNQKGNMKFKNIFTNPPYGGD 361



 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 16/130 (12%)

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +      GG A  VL     F     S    +R+  +EN  +E +V++    F  T+  
Sbjct: 464 MMMDLLEEGGTAVGVLKEGIFF----DSKYKYLRQHCVENFKVEKVVSIDASQFENTSTK 519

Query: 405 TYLWILSN-RKTEERRGKVQLINATDLWT---------SIRNEGKKRRIINDDQRRQILD 454
           T +   SN  KT++      +I   D+            I     K   ++D    +   
Sbjct: 520 TSIIKFSNTGKTDQIEFYDLIIEKDDITEVQEQEDGTFEIVKIKGKITRVHDKLVSK--A 577

Query: 455 IYVSRENGKF 464
            Y      ++
Sbjct: 578 TYQELVENEY 587


>gi|319897061|ref|YP_004135256.1| type i restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
 gi|317432565|emb|CBY80925.1| putative type I restriction-modification system methyltransferase
           [Haemophilus influenzae F3031]
          Length = 686

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 103/320 (32%), Gaps = 72/320 (22%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  +    G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 345 GKLFNEMYSWLGFSQDKLNDVVLTPSYVATLLAKLARVNKDS----------YVWDFATG 394

Query: 216 TGGFLTDAMNHVA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  AMN +            +              G E+    + + +  M++   
Sbjct: 395 SAGLLVAAMNEMLIDAKNTITSPDELRQKEAHIKAHQLLGVEILSSVYMLAILNMILMG- 453

Query: 265 ESDPRRDLSKNIQQGSTLSK---DLFTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                 D S N+   ++LS      F  K F     + NPP+ K+               
Sbjct: 454 ------DGSSNVLNKNSLSDFEGKGFEDKAFPADAFILNPPYSKEGNG------------ 495

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           M+F+    N +       G AA+++  S    G   + E   R 
Sbjct: 496 ----------------MIFVEKALNMVNK-----GYAAVIIQDSA---GTGKAKEINQR- 530

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            +L+   + A + +P D+F   +++ T +++    +  E +  V+ I+ T+      +  
Sbjct: 531 -ILQKHSLIASIKMPADIFIGKSSVQTAIYVFKVGEKHEEKQLVKFIDFTNDGYKRSSRK 589

Query: 439 KKRRIINDDQRRQILDIYVS 458
           K +   N        + Y  
Sbjct: 590 KAKASTNLRNVDHATERYQE 609


>gi|58616448|ref|YP_195577.1| Type I restriction enzyme (modification subunit) [Azoarcus sp.
           EbN1]
 gi|56315910|emb|CAI10553.1| Type I restriction enzyme (modification subunit) [Aromatoleum
           aromaticum EbN1]
          Length = 594

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 97/279 (34%), Gaps = 38/279 (13%)

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D    + F   +S PP G +   +             GRF       S         +  
Sbjct: 205 DGPRLRSFAKTVSFPPMGVRLPLETS------DRDLYGRFRERTTSSS---------VLA 249

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
              +      RA I+  +S LF   A   E  +R+ L+ +  +EA++ LP    F T I+
Sbjct: 250 ARHVLAQTQRRAVILAPNSLLFGAGA---ERSLRQDLV-HGGLEAVIGLPPATLFGTAIS 305

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             + +++  +      +V  ++ +      + +GK R  +     R++L     R  G  
Sbjct: 306 LAVMVINLEQAATHV-EVLFVDGSAD-RFHKRDGKGRTTLT--GWRELLQAVNQRRTGDH 361

Query: 465 -----SRMLDYRTFG-----YRRIK----VLRPLRMSFILDKTGLARLEADITWRKLSPL 510
                S++++   +      Y R      V   LR S ++    L      +  R  +  
Sbjct: 362 VTAVPSQVIEENDYQLMVSRYARSPMIDAVDEALRRSEVVPLEELVEFIRPVPAR-AAGS 420

Query: 511 HQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
            +   ++ L+  +  +  YG+  +  K          L+
Sbjct: 421 AEELPVEALEVGVPDLPEYGYIRNPQKRVRLEALKNALR 459


>gi|159041629|ref|YP_001540881.1| hypothetical protein Cmaq_1062 [Caldivirga maquilingensis IC-167]
 gi|157920464|gb|ABW01891.1| conserved hypothetical protein [Caldivirga maquilingensis IC-167]
          Length = 1231

 Score = 62.3 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 36/256 (14%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
            + Y AF    +  E      G  FY +    L    +  + N L   +         IF
Sbjct: 242 IQTYYAFILKLLAAEVVYLYGGGRFYISYIADLDDAYTRGSVNALRDELRELESG--GIF 299

Query: 116 EDFDFSSTIA------RLEK-----AGLLYKICKNFSGIELHPDTVP----DRVMSNIYE 160
             F + + +        LE+     AG L ++ +  S  E     +       ++  +Y+
Sbjct: 300 RHFGYENFLEGDYFSWYLEELDGELAGALAEVIRRLSDYEPATPQLEPEYARDLLKRLYQ 359

Query: 161 HLIRRFGSEVSEGAEDFMTPR--------DVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            L+ R   ++     ++ TP         +V      L+    +   K  P     + DP
Sbjct: 360 ELMPR---DIRHNLGEYYTPDWLADFLLDEVGLSLGNLMEMGKEDSLK--PLQQLRVLDP 414

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPH------GQELEPETHAVCVAGMLIRRLES 266
            CG+G FL   +  +      + +  +LV +      G +L P          L+   + 
Sbjct: 415 ACGSGTFLVRYIARLRAYAREYFLEDVLVDYVLQNVVGYDLNPLAVLTARTNYLLMIADL 474

Query: 267 DPRRDLSKNIQQGSTL 282
             +  +   I    +L
Sbjct: 475 PKKGTIEIPIYMADSL 490


>gi|284054608|ref|ZP_06384818.1| superfamily II DNA/RNA helicase [Arthrospira platensis str. Paraca]
          Length = 516

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 95/339 (28%), Gaps = 54/339 (15%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---- 103
            E   +   EK    G   +DL    +     F   +      L   +   N+       
Sbjct: 156 WEKAAAEFGEKVRGLGEKLVDLIESERQTNPKF-IDAFEGFINLCRQSINPNISDAAVEE 214

Query: 104 --IASFSDN--AKAIFEDFDF----------SSTIARL-----EKAGLLYKICKNF---- 140
             I         + IF + DF             I  L      +A  L  +   F    
Sbjct: 215 MLIQHLLTERIFRQIFNNPDFTRRNIIAVEIEKVIETLTSKSFSRAHFLGDV-DYFYRAL 273

Query: 141 --SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDA 197
             +   +   +     ++ +YE   + F  +V++      TP+ +V      +       
Sbjct: 274 EEAAATITEYSEKQHFLNTVYERFFQGFSLKVADTHGIVYTPQSIVDFMVKSVDEILRTE 333

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K        + DP  GTG F+   M  +      HK       H  E+    + +   
Sbjct: 334 FNKSLSDKGVHILDPFVGTGNFIMRIMREIRKTALSHKYQQE--LHCNEVMLLPYYIASM 391

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPP 300
            +    L +  +      I    T S       DLFT +                + NPP
Sbjct: 392 NIEHEYLTATGQYQPFDGICLVDTFSVQESLQLDLFTPENTQRVKQQQSSPIFVVIGNPP 451

Query: 301 FGKKWEKDKDAVEKEH---KNGELGRFGPGLPKISDGSM 336
           +    + + D  +      + G   R      K S  ++
Sbjct: 452 YNAWQQNENDNNKNRKYSQRGGVDKRVAETYAKDSKATL 490


>gi|312870427|ref|ZP_07730548.1| conserved domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094044|gb|EFQ52367.1| conserved domain protein [Lactobacillus oris PB013-T2-3]
          Length = 334

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 113/342 (33%), Gaps = 47/342 (13%)

Query: 86  YSLSTLGSTNTRNNLES-YIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGI 143
           + L   G+   +  L S Y+ +  +NA+ + +        +   +    L K+ +     
Sbjct: 9   FELFDQGTEILQAALRSSYLDAMLENAENVIDGRVAVEDGVPDKKTVEQLEKLYQEMHLK 68

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +   +T+  +V+   +  +IR+   + +       TP  +  L   L+            
Sbjct: 69  DASAETI-RQVLQLSFLKVIRKDAIQANHQM----TPDTIGFLMAFLI------EKISKL 117

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               T++DP  GTG  LT  +N +    +       +  +G + +P    V  A + ++ 
Sbjct: 118 DRPSTIFDPAVGTGNLLTTIINQLQQASAEP-----IHGYGIDNDPAMLEVASASVALQG 172

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           L+ D     + N      L             +   P  +  +  K   +K H       
Sbjct: 173 LDVDLFHQDAIN-----ALDIPECDLAVADLPIGYYPLDQNTKNYKTRAQKGHSYVHH-- 225

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                        L +    N L       G   + L  S LF            +W+  
Sbjct: 226 -------------LLIEQAMNYLRP-----GGFGVFLVPSNLF---QTKEAQPFIQWMHS 264

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG-KVQL 424
              ++ ++ LP +LF   N    + +L     + ++  KV L
Sbjct: 265 VGYLQGLINLPAELFANQNAQKAILLLQRHGGKSKQAVKVLL 306


>gi|312875573|ref|ZP_07735574.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
 gi|311088827|gb|EFQ47270.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus iners LEAF
           2053A-b]
          Length = 417

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           EK   L  I    + I        D     + YE+LI  + S   +   +F TP+ V  L
Sbjct: 14  EKNKRLADILTGIAEINFGEFQKNDIDAFGDAYEYLISNYASNAGKSGGEFFTPQTVSKL 73

Query: 187 ATALLLDPDDALFKESPGMIRT 208
              +++D   ++ K       T
Sbjct: 74  LARIVMDGKTSINKAYDPPYNT 95


>gi|227529725|ref|ZP_03959774.1| DNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
 gi|227350391|gb|EEJ40682.1| DNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
          Length = 311

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 112/348 (32%), Gaps = 51/348 (14%)

Query: 102 SYIASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           SY+ +  +NA+ I +D        +   E    L KI +      +  + +  +++   +
Sbjct: 10  SYLDAMLENAENIIDDNTVRVEDGVPDKETQEKLEKIYQQLDLKNVKAEAI-RQLIQLSF 68

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             +IR+   + +       TP  +  L   L+              + T++DP  GT   
Sbjct: 69  LKVIRKDAIQANHQM----TPDTIGLLMAFLI------EKVTQNTKLETIFDPAVGTANL 118

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           LT  +N +            +   G + +    +V    + ++    D     +      
Sbjct: 119 LTTVINQL-----DKDEHDNIKGFGIDNDDSMLSVASVNVALQYANVDLFHQDAVG---- 169

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                      +    +S+ P G            ++      R   G    S    L +
Sbjct: 170 ------ALDIPQCDLAVSDLPIGY-------YPLDDNTKDYQTRAKKGH---SYIHHLLI 213

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
               N L+      G   + L  S LF  +   G     +W+     ++  V LP++LF 
Sbjct: 214 EQSMNYLKP-----GSFGVFLVPSSLFQTKETEG---FVKWIHSVAYLQGFVNLPSELFA 265

Query: 400 RTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIRNEGKKRRIIND 446
                  + +L       ++  KV L      + S +++    R + +
Sbjct: 266 NPAAQKSILLLQRHGGNGKQAAKVLL----GEFPSFKDQKNFARFMQE 309


>gi|254167200|ref|ZP_04874053.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
 gi|197624056|gb|EDY36618.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
          Length = 995

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/477 (13%), Positives = 123/477 (25%), Gaps = 136/477 (28%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         + E       + +             YN+  +         T  
Sbjct: 236 IFLRMCEDRGVERYGRLLEAAEEDVYAALLKLYQEADKK---YNSGLFHFKPEKGRATEP 292

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMS 156
           +              I  +            + +L +I K   +         +   ++ 
Sbjct: 293 D-------------DITPNIKI--------DSKVLKRIIKGLYYPESPYEFSVISPEILG 331

Query: 157 NIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +YE  + +                EV +    + TP+ +V       +           
Sbjct: 332 QVYEQFLGKVIRLTKGHRAKVEEKPEVKKAGGVYYTPQYIVDYIVENTVGKLCKGKTPKE 391

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG-----------------------------SHH 234
                + DP CG+G FL  A   + +                                  
Sbjct: 392 MEKIKILDPACGSGSFLLGAYTRLLEEHLRYYTSAKNKKRYRDRIYQDKNGEWRLTIREK 451

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQG 279
           K   +   +G +++ +   V    +L++ LE + +                DL  NI+ G
Sbjct: 452 KRILLNSIYGVDIDEQAVEVTKLSLLLKVLEGENKDALERQQKLWRERALPDLGNNIKCG 511

Query: 280 STL--------------------------SKDLFT----GKRFHYCLSNPPF-GKKWEKD 308
           ++L                           +  F        F   + NPP+  ++    
Sbjct: 512 NSLVGTDYYASGVQMTLFDEEGERINAFDWEKEFPEVMKNGGFDVIIGNPPYVRQEMLGK 571

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                KEH     G         +D  + F+      L+     G   A           
Sbjct: 572 LKNYFKEHYEVYHG--------TADLYVYFIERSMKLLKPNGIYGIIVA--------NKW 615

Query: 369 RAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
              +    +R WL +  ++E I+    LP  +F +      + I+   K  +    V
Sbjct: 616 MRANYGKPLREWLKKWQIVE-ILDFGDLP--VFKKATTYPCIMIVKASKPRKYFWAV 669


>gi|327405008|ref|YP_004345846.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327320516|gb|AEA45008.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 608

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 104/340 (30%), Gaps = 54/340 (15%)

Query: 97  RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLL-----------YKICKNFS 141
              L++Y+ S+S +     K I  +F  ++      K  LL           +K+ + FS
Sbjct: 2   NKELQTYLKSYSYDPIKVNKLIVSNF-LNANSKDKVKGKLLSSLRIKKNSPDFKLVEEFS 60

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I               +E +I     +    +    TP  +        L   + L   
Sbjct: 61  RIHTLRSIEDLIE---AFEFVI---SPQEKIVSGAVYTPESIRDYIITSTLSNTNDLT-- 112

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP-PILVPHGQELEPETHAVCVAGML 260
                  L DP CG  GFL  A  ++                 G +++  +       + 
Sbjct: 113 ----GVNLCDPACGCAGFLYTAAKYLKQQTGRTYKQIYRDNIFGLDIQEYSIERSKILLS 168

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPF--GKKWEKDKDAVEK 314
           +  L      D   N+  G+ LS +        + FH    NPP+   +  + +   + +
Sbjct: 169 LAALLEGEDVDFDFNLFTGNALSFNWNEEITGFEGFHVIAGNPPYVCSRNIDDESKDLLQ 228

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
             +    G     +P        F       L      GG    +  +S   +       
Sbjct: 229 NWQVCSTGHPDLYIP--------FFELGMTYLRP----GGILGYITMNSFFKSINGR--- 273

Query: 375 SEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNR 413
             +R +L + D    I+      +F   +  T +  + NR
Sbjct: 274 -AVREYLAQFDN--TIIDFGGYQVFNSKSTYTCICFIQNR 310


>gi|325849557|ref|ZP_08170795.1| hypothetical protein HMPREF9246_0101 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480038|gb|EGC83115.1| hypothetical protein HMPREF9246_0101 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 152

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 11/137 (8%)

Query: 62  FGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-------FSDNAKAI 114
             G +   +    +A   F+   E     + S  T   +   I          +     I
Sbjct: 2   EDGEDYAEDRDEYLAKNIFFVPKEARWEYVASNATIPEIGQLIDQTMISIEEENPKLNGI 61

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                    + +        ++   F  ++L        ++   +E+ I +F S     A
Sbjct: 62  LPKNYARPELDK----RRPGEVVVLFDNLKLKDHGSSKDILGRAHEYAIAKFASLEGRNA 117

Query: 175 EDFMTPRDVVHLATALL 191
            +F TP  +V     +L
Sbjct: 118 GEFYTPTSIVRTIVEIL 134


>gi|107024431|ref|YP_622758.1| N-6 DNA methylase [Burkholderia cenocepacia AU 1054]
 gi|105894620|gb|ABF77785.1| N-6 DNA methylase [Burkholderia cenocepacia AU 1054]
          Length = 578

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 70/234 (29%), Gaps = 33/234 (14%)

Query: 167 GSEVSEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           G E  +    F TP  +   L   L     D         +R   DP CG   FL     
Sbjct: 91  GEERRKQLAMFFTPPSLTKRLLDDLSASGVDFS-------VRKFCDPACGGAAFLAPIAM 143

Query: 226 HVADCGSHHKIPPILVPHGQELE----PETHAVCVAG-----MLIRRLESDPRRDLSKNI 276
            + D           +    +       +  A+C        M++              I
Sbjct: 144 RMRDALRERGTSATQILDHVQRHLLGFDKDAALCEMSKHFLLMVLHDEVVATGARPKFQI 203

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            QG +L +           + NPPF K    +     +         F   +    +   
Sbjct: 204 HQGDSLIRAQSLLGALDVVVCNPPFRKMPSAEVAHYLEH--------FADIIEAQPNLYA 255

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           LF+      L      GG  A+V  +S L    +G   S++R +LL    + +I
Sbjct: 256 LFMALCVKLLAP----GGACALVTPTSFL----SGQYFSKLRTFLLTQANVLSI 301


>gi|327413038|emb|CAX68066.1| conserved hypothetical protein [Salmonella enterica subsp. VII]
          Length = 644

 Score = 62.3 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 50/135 (37%), Gaps = 14/135 (10%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           + LL ++ +         +  P   +  I+ +L        +     + TP +V +  + 
Sbjct: 483 SRLLAEVIE-------GLEFCPTDFLGQIFMNL-----ELGNTRHGQYFTPYNVCYTMSR 530

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           + L    ++         T+ DP CG GG +      + + G +      ++ +  +++P
Sbjct: 531 MTLSDRLSVLTSGERDFITVSDPACGAGGMIVAMAEAMLEAGFN--PQKQMMVYCVDIDP 588

Query: 250 ETHAVCVAGMLIRRL 264
               +C   + +  +
Sbjct: 589 VAAMMCYIQLSLMGI 603


>gi|227500925|ref|ZP_03930974.1| site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
 gi|227216944|gb|EEI82333.1| site-specific DNA-methyltransferase (adenine-specific)
           [Anaerococcus tetradius ATCC 35098]
          Length = 231

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 54/188 (28%), Gaps = 15/188 (7%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L+ +  + E       + Y +         ++      S    +   L    +    
Sbjct: 34  MLFLK-VYDSKEEDWEIDEDNYESIIPRKYRWSNWAHDDK-SGSALTGDGLLDFVNNGLF 91

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
             L++     +           F      ++   LL ++      I+   D        +
Sbjct: 92  PTLKNLPVDKNTPINKAIVKTTFEDANNYMKDGVLLRQVINIIDEIDFS-DYEESHAFGD 150

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           IYE +++    + +  + +F TPR V      ++           P +   + D  CG  
Sbjct: 151 IYESILKEL--QSAGSSGEFYTPRAVTDFMAMMI----------KPQIGEKMADFACGFR 198

Query: 218 GFLTDAMN 225
             +    N
Sbjct: 199 VIIVIEAN 206


>gi|119486016|ref|ZP_01620078.1| hypothetical protein L8106_05830 [Lyngbya sp. PCC 8106]
 gi|119456791|gb|EAW37919.1| hypothetical protein L8106_05830 [Lyngbya sp. PCC 8106]
          Length = 759

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 65/218 (29%), Gaps = 28/218 (12%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA---TALLLDPDDAL 198
              +       + +  +YE+  + +  + ++      TP ++V L       L+      
Sbjct: 6   SENIANHHEKQKFLKAVYENFYKAYNPKAADRLGIVYTPNEIVRLMIESADYLVHKHFGK 65

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
               PG+   + DP  GTG ++T+ + ++      HK       H  E+    + +    
Sbjct: 66  LLSDPGV--EILDPCTGTGTYVTELIEYLPADKLEHKYK--HEIHCNEVAILPYYIANLN 121

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------------YCLS 297
           +     +   + +  +NI    TL    F GK+ +                       + 
Sbjct: 122 IEFTYQQKMGKYEEFQNICLVDTLDHCGFAGKQLNLFAMSVQNTARIKEQNSRTISVIIG 181

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           NPP+       +             R      K     
Sbjct: 182 NPPYNAWQADFRQDNPNRQYKDVDRRIKATYIKKGTAQ 219


>gi|400288|sp|Q03055|MTV1_VIBS3 RecName: Full=Modification methylase VspI; Short=M.VspI; AltName:
           Full=Adenine-specific methyltransferase VspI
 gi|48457|emb|CAA48625.1| methylase [Vibrio sp.]
          Length = 408

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 66/217 (30%), Gaps = 36/217 (16%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +      +  + V    +S+IYE  +             F TP+++       L     
Sbjct: 83  LEEMIHNIIRSNEVHPEGLSDIYEESL---SESYKNKEGVFYTPKEIAADFFDYLPKDCS 139

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            L         T  DP CGTG FL +A+          +       +G +++     +  
Sbjct: 140 EL---------TFCDPCCGTGNFLIEAVK---------RGFKPCNIYGYDIDEVALEISR 181

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           + +       +       NI++   LS      +++    +NPP+GKK  K       + 
Sbjct: 182 SRL------KELCGVAESNIEKRDFLSASYQIEQKYDVIFTNPPWGKKLPKKDKDSLAD- 234

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
                           D S +F       L      G
Sbjct: 235 --------SLATGNSKDTSAIFFFASMKILNSSGYLG 263


>gi|1709162|sp|P50190|MTM1_MICAM RecName: Full=Modification methylase MamI; Short=M.MamI; AltName:
           Full=Adenine-specific methyltransferase MamI
 gi|984668|emb|CAA55646.1| methyltransferase [Microbacterium ammoniaphilum]
          Length = 362

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 67/202 (33%), Gaps = 13/202 (6%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           RL +  +L       + I L   T     +   ++  +         G   ++TP  V  
Sbjct: 144 RLAEPTVLQSALALVNEI-LGGGTRVADPLGTAFDAFLSGRYDHSG-GLGTYLTPSSVAR 201

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   ++LD   +           + DP CGTG FL  A +   +   +  +  +L     
Sbjct: 202 MMAEVVLDLLSSDALADVRAPI-IADPFCGTGRFLVAAFDAAEERHENVDLAGLLDGGLV 260

Query: 246 ELEPETHAVCVA--GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY--CLSNPPF 301
             +  T A+  +   +L+            +      +++       R      L+NPPF
Sbjct: 261 GADQSTTAIAKSGLNLLLYG------AQQPEVYAVADSMTDPGLDRLRGTLAAVLTNPPF 314

Query: 302 GKKWEKDKDAVEKEHKNGELGR 323
           G     D   +++  +     R
Sbjct: 315 GGGKYDDALGIDRTRELFPSVR 336


>gi|325282540|ref|YP_004255081.1| adenine specific DNA methyltransferase [Deinococcus proteolyticus
           MRP]
 gi|324314349|gb|ADY25464.1| adenine specific DNA methyltransferase [Deinococcus proteolyticus
           MRP]
          Length = 891

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 84/282 (29%), Gaps = 49/282 (17%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG--- 204
                  +   YE  +  +  E+ +    + TP DVV      +          S G   
Sbjct: 323 SRFQGDAVQYFYEPFLAAYDPELRKQFGVWYTPADVVEYMVERVDQSLREDLGLSLGLAD 382

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADC-----------GSHHKIPPILVPHGQELEPETHA 253
               + DP  GTG +LT A+  +                  K        G E+ P  + 
Sbjct: 383 PSVYVLDPATGTGSYLTAALGRIERTLRAQPDWDDASADELKKAATQRLFGFEIMPAPYV 442

Query: 254 VCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFT----------------------G 289
           +    M   + R  +         I   + L+    +                       
Sbjct: 443 IAHMRMGQRLARSGAALEGQERAAIYLTNALTN-WHSAPPRLDMPELQAEQDAAQHVKQN 501

Query: 290 KRFHYCLSNPPFGK---KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           +     L NPP+       + ++  +  E+K G +  +  G+ K +   +        + 
Sbjct: 502 QPILVILGNPPYSAFVGTSQDEEGGLIDEYKQGLVSEW--GIKKFNLDDLYVRFFRVAER 559

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLI 387
           ++   G G    +   S L    +      +RR LL E DL+
Sbjct: 560 KIGQTGRGIVCFISPYSYL----SDPSFVVMRRKLLGEFDLL 597


>gi|313667087|gb|ADR72986.1| M1.BsmFI [Geobacillus stearothermophilus]
          Length = 560

 Score = 61.9 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 43/252 (17%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--- 224
               +      TP+ V  L  +L +              RT+ DP  G G FL       
Sbjct: 16  ENKKDMLGQVFTPQGVADLMVSLGM----------NTKPRTILDPCFGEGVFLESIQKRK 65

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            +V +      +    V + +               +  ++    + +            
Sbjct: 66  EYVGNHTKIIGVEIDPVLYERVQRKFP------NFELYNMDFFDFQGV------------ 107

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                      + NPP+ ++    +      +K+  + R       IS  S L++  L  
Sbjct: 108 -------VDCVIMNPPYIRQELLREKMPRFLNKSDIMARLPLLQYPISSRSNLYVYFLIK 160

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
              +    G   AI+ +        A    +  +++LL+N  I+AI+    D+F   ++ 
Sbjct: 161 AWSILSEKGSIIAIIPN-----TWMAAEYGNSFKKFLLQNFWIKAIIQFNKDVFPDADVE 215

Query: 405 TYLWILSNRKTE 416
           + +  LS  K  
Sbjct: 216 SCILYLSKEKDA 227


>gi|50119547|ref|YP_048714.1| hypothetical protein ECA0597 [Pectobacterium atrosepticum SCRI1043]
 gi|49610073|emb|CAG73513.1| conserved hypothetical protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 653

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 68/251 (27%), Gaps = 33/251 (13%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVA---GYSFYNTSEYSLSTLGST-----NTRNN 99
              +   V       GG   D  +   +         N    +            N    
Sbjct: 387 FAKSVDEVAANDEEEGGDPDDPGNLAALPWVRNQGRSNPHRATFIRQFQEIAPYENRWTV 446

Query: 100 LESYIASFSDN-------AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
              +I   +          + I +D+       +         +   F+ +    +    
Sbjct: 447 FSDFIHMSAAALHNRCHFVQEIEDDYLRRIKRYKKADQNRFPLL---FNTLVEGMEFSAS 503

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L         +    + TP  V ++   L L               T+ DP
Sbjct: 504 DFLGSVFMEL-----ELGDQRRGQYFTPYSVGYMMAKLQLADGLPALTSGERDFITVSDP 558

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG GG +      + + G +      ++    +++P    +    + +  + +      
Sbjct: 559 ACGAGGLIVAMAQAMLEAGFN--PQKQMMAVCVDIDPVAAMMAYVQLALCGIPAM----- 611

Query: 273 SKNIQQGSTLS 283
              +  G++LS
Sbjct: 612 ---VIVGNSLS 619


>gi|87310600|ref|ZP_01092729.1| adenine specific DNA methyltransferase [Blastopirellula marina DSM
           3645]
 gi|87286821|gb|EAQ78726.1| adenine specific DNA methyltransferase [Blastopirellula marina DSM
           3645]
          Length = 744

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 84/263 (31%), Gaps = 33/263 (12%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP------------DDALFKESPGMI 206
           +E  + +    +      + TP  V       +               DD+  K +   +
Sbjct: 14  FESRLAKSDDSLRRRHGVYYTPPVVAAAMIQAVDHGLKSQLGLPLGLADDSRRKGTDVPL 73

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCV 256
            ++ DP CG G FL  A+  +          P               G EL PE  A   
Sbjct: 74  VSILDPACGDGVFLEAAVRQIYQNYRSAGNEPSWPSAVHCTVLPRLFGCELFPEAAADAK 133

Query: 257 AGMLIRRLESDPRRDLSK--NIQQGSTLSKDLF-TGKRFHYCLSNPPFGKKWEKDKDAVE 313
             ++    E+      ++   I+ G  L++  +   + F   + NPP+        + ++
Sbjct: 134 QRLIETLAETGVTDVTAEEIQIRIGDALAESTWSADEHFSVIVGNPPYSAAAALHGEWIK 193

Query: 314 KEHK-NGELGRFGP---GLPKISDGSML---FLMHL-ANKLELPPNGGGRAAIVLSSSPL 365
                +G+  R      G P       L   ++      +  L  +G G  A + +   L
Sbjct: 194 SLMTGSGDPSRNYYQVAGEPLREKKLWLHDDYVQFFRLAQRHLDRSGVGILAFLTNHGYL 253

Query: 366 FNGRAGSGESEIRRWLLENDLIE 388
            N        E+ R   +  L++
Sbjct: 254 DNPTFRGMRWELLRGFDQIHLVD 276


>gi|57505847|ref|ZP_00371772.1| type IIS restriction enzyme [Campylobacter upsaliensis RM3195]
 gi|57015877|gb|EAL52666.1| type IIS restriction enzyme [Campylobacter upsaliensis RM3195]
          Length = 1096

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 99/314 (31%), Gaps = 76/314 (24%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 +   ++  + +      +E  +  +TPR VV +  +L     D+          
Sbjct: 336 KLQTADIAGRLFNSITKWLEVPDNEKNDVVLTPRYVVDMMVSLTGVNKDSF--------- 386

Query: 208 TLYDPTCGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVA 257
            ++D   G+G FL  AMN +           +  +           G E   + + + + 
Sbjct: 387 -VWDYATGSGAFLISAMNAMIKDAQNLQSPKEIEAKIAHIKAYQLLGIEKRSDIYLLGIL 445

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK---------DLFTGKRFHYCLSNPPFGKKWEKD 308
            M++         D S N+    +L                      L NPP+    +  
Sbjct: 446 NMIL-------LDDGSANLLHKDSLKDFNGSYEQGDKKGQSFPADVFLLNPPYSASGKG- 497

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                                       +F+     K+       GRA +++  +     
Sbjct: 498 ---------------------------FIFVERALRKMSK-----GRACVIIQENAGSGN 525

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLIN- 426
                       +L++  + A + +P+DLF   +++ T +++    K    +  V+ I+ 
Sbjct: 526 GLPYTAD-----ILKHSTLLASIKMPSDLFAGKSSVQTAIYVFEVGKAHNVKQMVKFIDF 580

Query: 427 ATDLWTSIRNEGKK 440
           ++D +T    +  K
Sbjct: 581 SSDGYTRAARKKAK 594


>gi|77917738|ref|YP_355553.1| putative DNA methylase [Pelobacter carbinolicus DSM 2380]
 gi|77543821|gb|ABA87383.1| putative DNA methylase [Pelobacter carbinolicus DSM 2380]
          Length = 1022

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 89/328 (27%), Gaps = 57/328 (17%)

Query: 125 ARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI----RRFGSEVSEGAEDFM 178
             L +A    +                  +     I   LI      F S+  +    + 
Sbjct: 248 ETLPEAAINRINDFLSRVDLETGQESFW-NYDFRYIPVELISGIYESFLSDEKKEVGAYY 306

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TPR +  L     L     +          +YD  CG+G  LT A   +       +  P
Sbjct: 307 TPRHLASLVVDQALAHSKNILS------ERIYDGACGSGILLTTAYRRLLAYAEALRGHP 360

Query: 239 ----------ILVPHGQELEPETHAVCVAGMLIRRL---------------ESDPRRDLS 273
                     +    G ++      V    + +  L               +       +
Sbjct: 361 LSFEERCQLLVEHIFGSDISEPACRVTAFSLYLSLLERLQPADIEELRENSDVKLPDLNT 420

Query: 274 KNIQQGS---TLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            N++ G        D       K F   LSNPP+ +  + +    +   K+      G  
Sbjct: 421 HNLRSGKEKGNFFSDQNTFAASKSFTIFLSNPPWVEPKKNETLPSDLWAKSK-----GVN 475

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLENDL 386
           +P+    +  F++   + +           +    +P  N       S  R   L+    
Sbjct: 476 IPRRQTAN-AFMLRALDSVSPSGKICLILPVSSFGAPTSNTFIAKWLSHYRLETLINFGD 534

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRK 414
           +  I      LF        + + S RK
Sbjct: 535 LRKI------LFSTAKQPCVVAVFSPRK 556


>gi|115523500|ref|YP_780411.1| superfamily II DNA/RNA helicase [Rhodopseudomonas palustris BisA53]
 gi|115517447|gb|ABJ05431.1| DNA or RNA helicase of superfamily II [Rhodopseudomonas palustris
           BisA53]
          Length = 1066

 Score = 61.9 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 102/364 (28%), Gaps = 58/364 (15%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG-STNTRNNLESYI---ASFSD 109
            V     A   +        + A   F   ++ +++ +  + + R  L  +I     FS 
Sbjct: 198 EVLAALRAMIDTAQKDNGPFRKAASKFLKHAQETINPMVTADDVREMLIQHILTEEIFSK 257

Query: 110 NAKAIFEDFDFSST------IARLE--------KAGLLYKICKNFSGIELHPDTVPDRV- 154
               +F++ DF         +  LE        K   +  +   ++ I  +   VP+   
Sbjct: 258 ----VFDEDDFHRQNNVAKELYTLENLFFTGAVKKNTMRALDTYYNAIRKNAHEVPNHTE 313

Query: 155 ----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTL 209
               +  IYE   + +  + ++      TP ++V              F ++       +
Sbjct: 314 KQRFLKMIYEGFYKVYNKKAADRLGVVYTPNEIVRFMVESADWLCQKHFGKNLIDRDVQI 373

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            DP  GTG F+ + + H                H  E+    + V    +         +
Sbjct: 374 LDPATGTGTFICELLEHFRGQKDKLAHKYKEELHANEVAILPYYVANLNIEATYAAITGQ 433

Query: 270 RDLSKNIQQGSTLSK------------DLF--------------TGKRFHYCLSNPPFGK 303
                N+    TL              DLF                ++    + NPP+  
Sbjct: 434 YAEFPNLCFVDTLDNVGGLGIRAGHQHDLFGAMSEENVARIKRQNTRKISVVIGNPPYNA 493

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGS----MLFLMHLANKLELPPNGGGRAAIV 359
             + + D  +         R      K+S                      +  G  A +
Sbjct: 494 NQQNENDNNKNRTYPRIDERIKDTYIKLSTAQKTKAYDMYTRFFRWASDRLHDDGILAFI 553

Query: 360 LSSS 363
            + S
Sbjct: 554 TNRS 557


>gi|162958010|ref|YP_001621442.1| RemS [Serratia entomophila]
 gi|155382597|gb|ABU23792.1| RemS [Serratia entomophila]
          Length = 256

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +  +A  L ++ + F  +    +   D ++  I+  L   FG+        F TP +
Sbjct: 76  QICKRYEAVDLQRMQELFCFLIGAMEGEMDDLLGGIFMEL--EFGTSS---MGQFFTPSE 130

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V  L  AL L       +  P +  +L +PT G+GG +  A  H+      +    +L  
Sbjct: 131 VSRLIAALTLGDHVKELEYRPFI--SLDEPTSGSGGMVIAAAEHL--LSKGYNPQQVLYI 186

Query: 243 HGQELEPETHAVCVAGMLIRRL 264
              +++P    +C   + +  L
Sbjct: 187 RCTDIDPLAADMCFIQLALLGL 208


>gi|288559582|ref|YP_003423068.1| type II restriction enzyme, methylase subunit [Methanobrevibacter
           ruminantium M1]
 gi|288542292|gb|ADC46176.1| type II restriction enzyme, methylase subunit [Methanobrevibacter
           ruminantium M1]
          Length = 1054

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 121/414 (29%), Gaps = 97/414 (23%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEK-----AGLLYKICKN--FS 141
             L +   R+ +E      + N K      DF      + K        L  I  N    
Sbjct: 312 DDLSNLKIRDEIEDRSFFENWNLKE-----DFEDKYEDIAKLIGVYKDTLNPIFINLLII 366

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRF------GSEVSEGAEDFMTPRDVVHLATALLLDPD 195
                   +   ++ +I+E+ I           E  +    + TP  +        + P 
Sbjct: 367 STYDFDSELDVNILGHIFENSISDIEELKNDNQEQRKKDGVYYTPEYITDYICRNTIIPY 426

Query: 196 DALFKESPGMIR---------------------TLYDPTCGTGGFLTDAMNHVADCGS-- 232
            ++  ++  +                        + DP CG+G  L  +++ + +     
Sbjct: 427 LSISGKASTVHELLYEYESSNSLDVLDSKLTNIKVLDPACGSGSMLNKSVDILFEIHEAL 486

Query: 233 -------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRL------ESD 267
                                K       +G +L  E+  +    + ++        E  
Sbjct: 487 HASKYAGDSSLDRFFDSLEKRKEIISNNIYGVDLNEESVEITKLSLFLKLATTVGLKEGF 546

Query: 268 PRRDLSKNIQQGSTLSKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKD 310
               L K+I+ G +L  D                  F    F   + NPP+    E D+ 
Sbjct: 547 QLPSLDKHIKCGDSLVDDESIAGNKAFNWYESFSEVFESGGFDIIVGNPPYVDIKEMDEK 606

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             +    N E       L         F+      L+      G  + ++ +S LFN   
Sbjct: 607 TAKYIFDNYETSFNRINLYST------FVEKSYYLLKNE----GIFSFIMPNSILFN--- 653

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
            S  S+IR  +L N  I  IV    D+F    +   + I      E  + K+ +
Sbjct: 654 -STYSKIRELILNNTSILNIVRTSDDVFKDAKVEPIILIFKKGYDEGNKTKILI 706


>gi|237718472|ref|ZP_04548953.1| hypothetical protein BSCG_04899 [Bacteroides sp. 2_2_4]
 gi|229452179|gb|EEO57970.1| hypothetical protein BSCG_04899 [Bacteroides sp. 2_2_4]
          Length = 970

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 53/250 (21%), Positives = 81/250 (32%), Gaps = 46/250 (18%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S  +     F TP  +V+   + L +        SPG      DP+ GTG F++     
Sbjct: 95  ASVKASTFTAFYTPPTIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRPQ 146

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                 +               PE  A     +L  R+ +    +   NI+    L    
Sbjct: 147 CHSASGNI--------------PEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PP 189

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                F    SN PFG     D    +    NG   RF       S  +  F      K 
Sbjct: 190 HRNGYFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKG 235

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNI 403
                 GG  A + S   + +  A      +R++L+    + + V LP +LF     T +
Sbjct: 236 LDAVREGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEV 291

Query: 404 ATYLWILSNR 413
            + L IL   
Sbjct: 292 GSDLIILQKD 301


>gi|119493868|ref|ZP_01624433.1| hypothetical protein L8106_09086 [Lyngbya sp. PCC 8106]
 gi|119452380|gb|EAW33571.1| hypothetical protein L8106_09086 [Lyngbya sp. PCC 8106]
          Length = 425

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L      Y   +  +          D  ++ IYE   + F  +V++      TP+ +V+ 
Sbjct: 97  LSTLDRFYGAIEETAATIDDYSKKQDF-LNTIYEKFFQGFSVKVADTHGIVYTPQPIVNF 155

Query: 187 ATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHG 244
               + D     F K        + DP  GTG FL   M  + +              H 
Sbjct: 156 MVKSVEDILQREFGKSLVDKGVHILDPFVGTGNFLIRVMREIVEIQKSALPYKYEQELHC 215

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH----- 293
            E+    + +    +     E        + I    T         DLF+ +        
Sbjct: 216 NEVMLLPYYIAAMNIEHEYFEQTGEYKSFEGICLVDTFEDQAVQQLDLFSPENMKRVQKQ 275

Query: 294 ------YCLSNPPFGKKWEKDKDAVEKE-----HKNGELGRFGPGLPKISDGSM-----L 337
                   L NPP+      + D  +        K G          K S  +       
Sbjct: 276 RNSNLFVILGNPPYNVGQLNENDNNKNRKYTNKDKTGIDDIVSATYAKASKATNKNALSD 335

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPL----FNGRAGSGESEI 377
             +          +  G  A V ++S +    F+G     E E 
Sbjct: 336 PYVKAIRWASDRISDEGIIAFVTNNSFIDQIAFDGMRQQLEKEF 379


>gi|317014886|gb|ADU82322.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori Gambia94/24]
          Length = 678

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 107/302 (35%), Gaps = 71/302 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  + R  G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 344 GKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  +MN +            +              G E+ P+ H + V  M++   
Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG- 452

Query: 265 ESDPRRDLSKNIQQGSTLS-KDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D S  I    +LS  D     +    +  + NPP+ ++                
Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDKEFKANAFVLNPPYSERGNG------------- 493

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M+F+     K++      G A++++ SS    G   + E  +R  
Sbjct: 494 ---------------MVFVEQALEKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++   +  N  K
Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588

Query: 440 KR 441
            +
Sbjct: 589 AK 590


>gi|15612430|ref|NP_224083.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori J99]
 gi|4155977|gb|AAD06940.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
           [Helicobacter pylori J99]
          Length = 678

 Score = 61.5 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 105/302 (34%), Gaps = 71/302 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  + R  G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 344 GKLFNEMYRWLGFTQDKLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  +MN +            +              G E+ P+ H + V  M++   
Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG- 452

Query: 265 ESDPRRDLSKNIQQGSTLS-KDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D S  I    +LS  D     +    +  + NPP+                   
Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDKEFKANAFVLNPPYSAPGNG------------- 493

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M+F+     K++      G A++++ SS    G   + E  +R  
Sbjct: 494 ---------------MVFVEQALEKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++   +  N  K
Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588

Query: 440 KR 441
            +
Sbjct: 589 AK 590


>gi|309809675|ref|ZP_07703531.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308170035|gb|EFO72072.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 172

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 20/161 (12%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------------ 49
           T+       L   IW  A++L G     DF   +L     R +   L             
Sbjct: 4   TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMFYRYISENLTNYINHGEIEAGN 63

Query: 50  ---PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT---SEYSLSTLGSTNTRNNLESY 103
                     E+        ++ + F  +    F N    S   +    + +    LES 
Sbjct: 64  TDFDFAQMSDEEAEEAREGLVEEKGFFILPSELFVNIKKKSNEDMEWAKA-HLNEKLESV 122

Query: 104 IASFSDNAKAIFEDFDFSSTIARLE-KAGLLYKICKNFSGI 143
                ++++    + DF+   A  +  +  L       +  
Sbjct: 123 FRHIEESSQGSEAEGDFAGLFADFDVNSNKLGATVAKKNEK 163


>gi|118442884|ref|YP_877876.1| type IIS restriction enzyme R and M protein [Clostridium novyi NT]
 gi|118133340|gb|ABK60384.1| type IIS restriction enzyme R and M protein, putative [Clostridium
           novyi NT]
          Length = 590

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 88/326 (26%), Gaps = 59/326 (18%)

Query: 127 LEKAGLLYKIC----KNFSGIELHPDTVPDRVMSN--IYEHLIRRFGSEVSEGAEDFMTP 180
           L K   LY I               +      +      E  I     +  +      TP
Sbjct: 6   LNKVNELYNIINAPIDRIFKTMAIENYKKTLNLGKEKFSEIYISLKEKDKKKEKGVVYTP 65

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------ 234
           +++       +L  +D +          + DP+CG G  L      + +    +      
Sbjct: 66  KEISAYMLENVLSKEDVV----KNPYIKILDPSCGCGDILIVCYEKLKEIYIENLKSINE 121

Query: 235 ------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       K        G +++     +    +              +N++    L
Sbjct: 122 VNNINLNEEDIPKHIIKNNLFGFDIDEVALKILAIDLF-----QISGYFCDENLRCMDFL 176

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                   +F   L NPP+          V+KE+       F        D S  F    
Sbjct: 177 LNKC--DCKFDIILGNPPY-----VGHKCVDKEYSKKLKSSFKEVYKDKGDISYCFFQQA 229

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--- 399
            N L          +     SP       SGE E+R+ L +   +  IV      F+   
Sbjct: 230 INNLIKEGKLSFITSRYFMESP-------SGE-ELRKVLKDVCSLYTIVD-----FYGIR 276

Query: 400 ---RTNIATYLWILSNRKTEERRGKV 422
                 +   +  L N++  +   KV
Sbjct: 277 PFKNAGVDPVIIFLINKQDAKEEIKV 302


>gi|323519972|gb|ADX94351.1| hypothetical protein ABTW07_2p058 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 258

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 23/181 (12%)

Query: 103 YIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           Y   F+ N +    +  +      RL+   L Y +              P  V+ +IY  
Sbjct: 54  YQNLFNQNIENEYLQRINRYDVSGRLKIKNLFYLLVDL-----CEAKGEPYDVLGSIYME 108

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L        ++    + TP +V +L   +++       +     + ++ DP CG G  L 
Sbjct: 109 L-----EIGNDHIGQYFTPSEVSNLCAQVVITDLKKQLE--EEGVISISDPACGAGSTLL 161

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +    +  S  ++   L     +++     +C   + +          +   I  G T
Sbjct: 162 STVKLCLE--SKIQVQDHLYIEAADIDRNVALMCYIQLSL--------WAVPCRIFVGDT 211

Query: 282 L 282
           L
Sbjct: 212 L 212


>gi|189459440|ref|ZP_03008225.1| hypothetical protein BACCOP_00063 [Bacteroides coprocola DSM 17136]
 gi|189433897|gb|EDV02882.1| hypothetical protein BACCOP_00063 [Bacteroides coprocola DSM 17136]
          Length = 607

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 79/281 (28%), Gaps = 34/281 (12%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
                      TP+ +       ++   +      P       D +CG G FL     ++
Sbjct: 77  DAEKTANGAVYTPKYIRDYIVRQVMHSVE-----KPLAECLCADISCGCGAFLYTLAEYI 131

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCV-AGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            +             +G ++             L+     +  ++   N+  G +L+ D 
Sbjct: 132 HEHTGEQYSNIFAHLYGVDISATNVNRAKIMLALVALQNGEIIQEDVFNLFTGDSLTFDF 191

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LF 338
                          + NPP+ +        ++KE K            K+ +  +   F
Sbjct: 192 RTMPNVANNNGLDIIVGNPPYVRS-----KHIDKETKKNLPL---WSTSKVGNADLYIPF 243

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL- 397
                  L      G         S             +R +  +N L  +IV     L 
Sbjct: 244 FEIGLTALNENGLLGYITVNTFFKSVNAR--------TLRNYFADNHLSLSIVDFGQQLV 295

Query: 398 FFRTNIATYLWILSNRKTEE---RRGKVQLINATDLWTSIR 435
           F +    T L  +S +++E     +  V  + A   +   R
Sbjct: 296 FKKKLAYTCLTFMSKKQSESLLYVKADVADVEAQKNFVYSR 336


>gi|303257419|ref|ZP_07343432.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|331000630|ref|ZP_08324285.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859776|gb|EFL82854.1| conserved hypothetical protein [Burkholderiales bacterium 1_1_47]
 gi|329570902|gb|EGG52610.1| hypothetical protein HMPREF9439_01933 [Parasutterella
           excrementihominis YIT 11859]
          Length = 561

 Score = 61.5 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 102/365 (27%), Gaps = 84/365 (23%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTV-----------PDRVMSNIYEHLIRRFGSEVSEGAE 175
           L+++    K+ + F                        ++  +Y+  +      V     
Sbjct: 80  LDRSDCDRKLAEKFKTEYGRTHNFVHKFAQVVLPEEFDLLGTVYQSFL---TEGVKNSTG 136

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            + T R V                +  PG   +  DP CG+G FL  A            
Sbjct: 137 SYYTERSVAQ--------ELLDSLEAKPGA--SFLDPCCGSGTFLILAQE---------- 176

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   G + +P    +  A +++   +         +++    +++     +RF + 
Sbjct: 177 --MGLKICGMDSDPIAVMIAKANLILSGAK------EYPDVRVIDFVNRWKSERRRFDFA 228

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            +NPP+  K +     V                         F M   + L+     GG+
Sbjct: 229 ATNPPWSSKTKNVYADVSS----------------------FFFMKTLSLLKS----GGK 262

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A ++  S L      +     R  L  +  +  I    T  F          +    K 
Sbjct: 263 LAFLMPISMLN----IASHRLFREHLFSDCRLLEIRKFDTK-FSGVQTDFVSILAEKAKP 317

Query: 416 EER-----RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            ER      G+++ I  +    + +           +   +IL        G+ S     
Sbjct: 318 AERFRMNESGEIREIPLSIFQLTEQKTIFSATEPEVEIICKILS------KGEISLADSK 371

Query: 471 RTFGY 475
              G 
Sbjct: 372 WALGV 376


>gi|84502048|ref|ZP_01000206.1| hypothetical protein OB2597_18212 [Oceanicola batsensis HTCC2597]
 gi|84390043|gb|EAQ02677.1| hypothetical protein OB2597_18212 [Oceanicola batsensis HTCC2597]
          Length = 1035

 Score = 61.1 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 107/389 (27%), Gaps = 86/389 (22%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF---SGIE 144
           L  L +   R  L S I     +    F   D       L   G  + +   F   + ++
Sbjct: 217 LHNLVADADRPGLRSLIDKLRSDFNGDFLGDDRHDPWQALTANG--FALLNQFLRRTDMQ 274

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGS-----EVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                  +   S I   L+          E       + TPR++  LA            
Sbjct: 275 TGQGDFWNYDFSYIPVELLSGLYEKFLTPEEQAKEGAYYTPRNLAMLAVDQAFLASQDPL 334

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEP 249
                    ++D  CG+G  LT A   +                          G ++  
Sbjct: 335 D------EVIFDGACGSGILLTTAYRRLLALQEARLGRQLGFAERGDLLKRRIFGSDINF 388

Query: 250 ETHAVCVAGM---LIRRLESDPRRDLSKNI----------------QQGSTLSK-DLFTG 289
               V    +   L+  L+     +  ++                 +QG    +   F G
Sbjct: 389 MACRVTAFSLYLSLLEGLDPADILEAQESDGTKLPPLKGSNLAHGSEQGDFFREAHAFRG 448

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---KISDGSMLFLMHLANKL 346
           +RF   +SNPP+ +     + + +   +         G+P   +   G+         + 
Sbjct: 449 RRFSLIISNPPWAEPEGASRTSADDWAEQ-------AGVPFVRRQIAGAYAL------RA 495

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL--PT--------- 395
                  GR  ++L    L    A S            D +E ++    PT         
Sbjct: 496 ADFLAESGRICLILPIGQLL--GASS-----------EDFVETLLNTYRPTRLINFGDLQ 542

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQL 424
            L F T   T    L   ++ + R  V  
Sbjct: 543 GLLFPTAENTCHVFLGEGRSADARNLVPF 571


>gi|317055396|ref|YP_004103863.1| hypothetical protein Rumal_0686 [Ruminococcus albus 7]
 gi|315447665|gb|ADU21229.1| hypothetical protein Rumal_0686 [Ruminococcus albus 7]
          Length = 610

 Score = 61.1 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 93/293 (31%), Gaps = 40/293 (13%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           + + Y I    + I      +    +  I+E L+ +      +      TP  +     +
Sbjct: 47  SDIDYSIVDKVNQI--TESKLTLNELIAIFEMLVPQ---SEKKEKGVVYTPEIITKYIVS 101

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELE 248
                       +   I T+ DP+CG G FL  A  ++ +     +        +G +++
Sbjct: 102 ---------HTLNCNNIPTVLDPSCGCGAFLVTAAEYIHERYSISYSDIISSYLYGVDID 152

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------FHYCLSNPPF- 301
                   + + +  L +      S N     TL K  +   +      F   + NPP+ 
Sbjct: 153 SNAIDRIKSLLSLIVLMNGEEEKCSFNFICSDTLDKKTYDKLQKMHKNGFDCVVGNPPYV 212

Query: 302 -GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
             K   +D         +  +G     +P        F     N L    +  GR   + 
Sbjct: 213 RNKNMSEDTKRHLTNWVSSSIGNVDLYIP--------FFEIGINLL----SDNGRLGYIS 260

Query: 361 SSSPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            +S L      S    +R++   E   +E I    + +F      T + ++  
Sbjct: 261 PNSYLQGVNGRS----LRKYFAAEQHQLEIIDFRDSQVFENVTSYTCITLIDK 309


>gi|307327890|ref|ZP_07607072.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
 gi|306886408|gb|EFN17412.1| N-6 DNA methylase [Streptomyces violaceusniger Tu 4113]
          Length = 1155

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 112/354 (31%), Gaps = 65/354 (18%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L ++    +   +        V  ++YE+ ++ +  E+ + +  + TP  +      L
Sbjct: 298 DTLVQVIDAVNWEAIRAQKPDAHV--HLYENFLQEYDRELRKRSGTYYTPPRLAREMVRL 355

Query: 191 LLDPDDALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-- 245
                        G      T+ DP  GTG FL++ ++ VA+  S            Q  
Sbjct: 356 TDAVLRTRLGCVEGFADEQVTIVDPAMGTGTFLSEIIDRVAEERSRRGEGFRGEAVEQLA 415

Query: 246 ----ELEPETHAVCVAGMLIRRLESDPRRDLSKN---IQQGSTLSKDL------------ 286
                 E +  A  VA M I +   +   D       +    TL+               
Sbjct: 416 GRLIGFERQMAAYAVAQMRITQTLREQVTDTQLGDLRLHLADTLADPYERATLFTFLPDG 475

Query: 287 -------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL----------GR 323
                           ++    +SNPP  ++ E +   VEK H+  +           GR
Sbjct: 476 DPLVENTRKADWIKREQKVTVMISNPPDRERAEGEGGWVEKGHEGDDRAPLLDDFRLGGR 535

Query: 324 FGPGLPKISDGSMLFLMHLANKL---ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
            G    K+ +  + F      K+       +  G  A + ++  L    +G G   +R++
Sbjct: 536 NGVHENKLKNLYVYFWRWATFKVFEQHRSESDRGIVAFISTAGFL----SGPGFRGMRKY 591

Query: 381 LLENDLIEAIVAL-PTD--------LFFRTNIATYLWILSNRKTEERRGKVQLI 425
           L E      I+ L P          LF        + +    + +     ++ +
Sbjct: 592 LRETCSEGWIIDLSPEGIQPPMRTRLFEGVQQPLAIAVFVRSRADTELAHIRYV 645


>gi|312199459|ref|YP_004019520.1| hypothetical protein FraEuI1c_5666 [Frankia sp. EuI1c]
 gi|311230795|gb|ADP83650.1| hypothetical protein FraEuI1c_5666 [Frankia sp. EuI1c]
          Length = 1197

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 89/290 (30%), Gaps = 71/290 (24%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +   D    R + ++Y+ L      +V +      TP  V      L L P    F   
Sbjct: 172 HDFTDDAWDTRFLGDLYQDL----SEDVRKKYALLQTPEFVEEFILDLTLTPAIDEFG-- 225

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVP-----HGQELEPETHA 253
              +  L DPTCG+G FL  A   +            +   +       HG ++ P   A
Sbjct: 226 -YDVVKLIDPTCGSGHFLLGAFRRLLAEWEKNSPDRDVFERVQLALDAVHGVDINPYAAA 284

Query: 254 VCVAGML--------IRRLESDPRRDLSKNIQQGSTLSKDL------------------- 286
           +    +         +  L++        ++  G +L K+                    
Sbjct: 285 IAKFRLTIEALRVAGLTTLDAAAGYTFPLHVAVGDSLLKNRQLDLFGEERDELAEFAYAT 344

Query: 287 ---------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                        R+H  + NPP+    +K  +A+ ++  +   GR+   +P        
Sbjct: 345 EDLADHLGILEEGRYHAVVGNPPYFTVRDKKLNALYRDLYSSCAGRYTLSVP-------- 396

Query: 338 FLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           F              G   GR   + ++S +          E  + L+EN
Sbjct: 397 FAQRFFELARQSDGDGVGAGRVGQITANSFMRR--------EFGKKLIEN 438


>gi|163868201|ref|YP_001609409.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017856|emb|CAK01414.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1662

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 54/374 (14%), Positives = 105/374 (28%), Gaps = 47/374 (12%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             + S   + I  + D ++     ++    Y   K  +     P    + ++  +YE    
Sbjct: 816  NAISQAMEKILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFT 874

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP +VV      + D     F +S G    ++ DP  GTG F+T  
Sbjct: 875  KAFKKTTDRLGIVYTPVEVVDFIIHSIDDVLRKEFGKSLGSRGVSILDPFTGTGTFITRL 934

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGST 281
            +          +       H  E+    + +    +      L         K+I    T
Sbjct: 935  LQSDLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIEATYHGL-MKGDYIPFKHIGLADT 993

Query: 282  LSK-------DLFTGKRFHY-----------CLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                      D    +   Y              NPP+    + + D  +         R
Sbjct: 994  FQTLKEKNLIDGMLKENSEYLELQKKLNIEVIFGNPPYSIGQKSENDNAKNTPYPILDKR 1053

Query: 324  FGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                    S  S+   L+  ++             G    V ++  +     G     +R
Sbjct: 1054 ISETYAAQSKASLIRGLYDSYIRAIRWASDRIKDRGVIGFVTNAGFI----TGHSMDSLR 1109

Query: 379  RWLLENDLIEAIVAL--------------PTDLF-FRTNIATYLWILSNRKTEERRGKVQ 423
            + L+E      I  L                 +F   +     + IL      ++ GK+ 
Sbjct: 1110 KCLVEEFSSLYIFHLRGNARISGEPRKKEGDGIFGEGSRAPIAISILVKNPESQQHGKIY 1169

Query: 424  LINATDLWTSIRNE 437
              +  D  T     
Sbjct: 1170 FRDIGDSLTRKEKL 1183


>gi|281355399|ref|ZP_06241893.1| DNA binding domain protein, excisionase family [Victivallis
           vadensis ATCC BAA-548]
 gi|281318279|gb|EFB02299.1| DNA binding domain protein, excisionase family [Victivallis
           vadensis ATCC BAA-548]
          Length = 641

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 58/157 (36%), Gaps = 26/157 (16%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              +  +Y+ L R   +     A  F TP +VV   TA L   D            TL D
Sbjct: 177 SDQLGFLYQALRR---TGSRVQAGSFYTPPEVVRSMTAGLTPHD----------GFTLLD 223

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G FL  A     +              G +L+P    +         L + P  D
Sbjct: 224 PGCGSGQFLLGAAEAGWEFDQ---------LFGIDLDPLALRLAAL----NLLLAFPAVD 270

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
              N++    L  D F  +RF   + NPP+G+  + +
Sbjct: 271 ALPNLKCADALLTDSFGRRRFDVVIGNPPWGRLADGE 307


>gi|57168918|ref|ZP_00368048.1| adenine specific DNA methyltransferase [Campylobacter coli RM2228]
 gi|57019754|gb|EAL56440.1| adenine specific DNA methyltransferase [Campylobacter coli RM2228]
          Length = 1028

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 106/343 (30%), Gaps = 48/343 (13%)

Query: 56  REKYLAFGGSNIDLESFVKVAGY--------SFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           ++ +      ++  E F  +           S+    +Y L  +   N  + L S   + 
Sbjct: 203 KDTFKNIEKIDLKDEEFCDILAQAIVYGIFVSYIENDDYDLEKIPIENFISFLPSTFRTL 262

Query: 108 SDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           S+        F     I   LE       +    +  ++    +    +  +YE  ++ +
Sbjct: 263 SEFVYFAIPSFSLPQDIKYTLENIKKTLSLIDKIALCKILNQDLESVSI-YLYEDFLKAY 321

Query: 167 ----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPTCGTGGF 219
                ++  +    F TP+ +V +  + L +       ++ G       + D   GTG F
Sbjct: 322 DDLRATQKRKEGGVFYTPKSIVDMIVSSLDELLKTKLNKNKGFNDQGVKVLDFATGTGSF 381

Query: 220 LTDAMNHVADC------GSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRD 271
           L      +             K   +   +G EL    + V    +  ++R+       D
Sbjct: 382 LASVFEKIISKESEVFKNEAIKNKFLKDIYGFELSFVPYIVARLKLGQILRKNGFVNFSD 441

Query: 272 LSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWEKD 308
               I   +TL                       ++D+   +     L NPP+  K +  
Sbjct: 442 ADFQIFLNNTLDLEKIANFDMFMPLENLDTEWKKARDVKHSQDLLVILGNPPYNVKSKNK 501

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            + + +  K  + G     +  ++D  + F+     KL     
Sbjct: 502 GEDILELLKIYKQGLNDKNIQSLNDDYIKFMRFAQWKLLEQNK 544


>gi|259501496|ref|ZP_05744398.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302191530|ref|ZP_07267784.1| putative modification methylase [Lactobacillus iners AB-1]
 gi|259167014|gb|EEW51509.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
          Length = 333

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 105/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F+  +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
           KL+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 KLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|268319769|ref|YP_003293425.1| hypothetical protein FI9785_1298 [Lactobacillus johnsonii FI9785]
 gi|262398144|emb|CAX67158.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 333

 Score = 61.1 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/360 (17%), Positives = 122/360 (33%), Gaps = 49/360 (13%)

Query: 98  NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152
            +L+  +  SFS      F+  +  +   ++E        + ++ + +  ++   D +P 
Sbjct: 16  EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   I+  L  +  ++ +       TP  V  +   +         K  P   +T+ DP
Sbjct: 72  ALKVQIFTLLALKAITQDARDYNLMPTPSVVATIIALIW-------QKIVPTGKKTVVDP 124

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             GTG  L    + +      +         G + E     +   G  +  L+ D     
Sbjct: 125 AIGTGNLL---YSVIRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                    L  D +  ++    LS+ P G  +  D +A   E+   E   F        
Sbjct: 178 ----YCQDAL--DPWMIEKSDVVLSDLPVGY-YPLDNNAQRYENHAKEGHSFAHT----- 225

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+  + N L+         A ++    LF G    G +E   WL +   I+AIV 
Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRIINDDQRR 450
           LP ++F        + +  N   +    +V +  +++     S+     K     D  + 
Sbjct: 274 LPDNMFSSQIQQKSILVFQNHGEKAVEREVLVAKLDSLKKPDSLVAFNMKLNDWYDKNKD 333


>gi|317013241|gb|ADU83849.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori
           Lithuania75]
          Length = 678

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 103/302 (34%), Gaps = 71/302 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  + R  G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 344 GKLFNEMYRWLGFTQDQLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393

Query: 216 TGGFLTDAMNH-----------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  +MN            + +              G E   + + + V  M++   
Sbjct: 394 SAGLLVASMNLMIEDAKKCITSLEELEQKIVHIKAKQLLGIEKLQKIYILAVLNMILMG- 452

Query: 265 ESDPRRDLSKNIQQGSTLS-KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D S  I    +LS  D        + +  + NPP+                   
Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDEEFKANAFVLNPPYSASGNG------------- 493

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M+F+     K++      G A++++ SS    G   + E  +R  
Sbjct: 494 ---------------MVFVEQALAKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++   +  N  K
Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588

Query: 440 KR 441
            +
Sbjct: 589 AK 590


>gi|284097505|ref|ZP_06385589.1| helicase domain protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830985|gb|EFC35011.1| helicase domain protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 268

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 78/260 (30%), Gaps = 35/260 (13%)

Query: 46  CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS-TLGSTNTRNNLESYI 104
                 +  + E+Y A            K A   FY T + +++  L        L  ++
Sbjct: 3   DLAAEMKQIIEERYEADTD--------FKTAFNGFYETCKAAINPNLSQNAVEEMLVQHV 54

Query: 105 ASFSDNAKAIFEDFDF----------SSTIARLEKAGL-----------LYKICKNFSGI 143
                  + +F+  DF             I  L +  +            Y   +N +  
Sbjct: 55  -LTERIFRTVFDHSDFSRRNIIASEIEKVIDILTRNDISRDAFLSPLDPFYNAIENAARN 113

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES- 202
             H  +    +++  YE   + F  +V++      TP+ +V      +       F  S 
Sbjct: 114 C-HDFSQKQHLLNTFYEQFFQGFSEDVADTHGIVYTPQPIVDFMVNSVSHILKTEFGRSL 172

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + DP  GTG F+   M+ ++     HK       H  E+    + +    +   
Sbjct: 173 SDEGVHIIDPFVGTGNFIVRLMHEISGAALQHKYQ--HELHCNEVMLLPYYIASLNIEQE 230

Query: 263 RLESDPRRDLSKNIQQGSTL 282
                 R    + I    T 
Sbjct: 231 YYHRTRRYLPFEGIVLADTF 250


>gi|297561667|ref|YP_003680641.1| DNA methyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846115|gb|ADH68135.1| putative DNA methyltransferase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 1121

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 90/324 (27%), Gaps = 77/324 (23%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL---LLDPDDALFKESPGMIRTLYDPT 213
           ++YE  + R+   + + +  + TP  V    T     +L     L         T  DP 
Sbjct: 334 DLYETFLTRYDPALRKSSGSYYTPAPVADFLTEFTDSVLRKRMDLPLGFADRSVTTVDPA 393

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILV-----PHGQE---LEPETHAVCVAGMLIRRLE 265
            G+G FL+ AM+           P          +       E  T A  V+ + + +  
Sbjct: 394 MGSGTFLSSAMDRARRNLEEEFGPVHTRTCLKDLYRDRLAGFERSTAAFAVSELRLHQQL 453

Query: 266 SDPRRDLSKNIQ---QGSTLSKDLFTGKRFH-----------------------YCLSNP 299
           S+               +TL       + F                          + NP
Sbjct: 454 SEQYGAEVPEEHRRFLCNTLDDPNHHYQSFGRRYDDLVHFRDQANQVKNSTPVMVVIGNP 513

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD---------GS-----------MLFL 339
           P+ +  ++   A   E +     R   G P  S          G            + F 
Sbjct: 514 PYIESAKQRDPAPWLERR-----RSPAGDPVTSRPSMDEFRELGQGGLDYKLSAVSLYFW 568

Query: 340 MHLANKL--ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL---- 393
                K     P    G  A V +S+ L  G A +G     R   +      IV L    
Sbjct: 569 RWATWKAFDAHPEQPSGVVAFVSTSAYL-TGDAFAGMRRYLRSTADEGW---IVDLSPEG 624

Query: 394 ---PTD--LFFRTNIATYLWILSN 412
              P +  +F        + I + 
Sbjct: 625 HRPPANTRVFGGVQQPVCIGIFAR 648


>gi|289192475|ref|YP_003458416.1| N-6 DNA methylase [Methanocaldococcus sp. FS406-22]
 gi|288938925|gb|ADC69680.1| N-6 DNA methylase [Methanocaldococcus sp. FS406-22]
          Length = 999

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 28/198 (14%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +  ++L  Y+    D    I  + D    I ++E +   +KI               + 
Sbjct: 249 KHIASDLPDYLDWIVDEIITILNNID----IRKIEDS---FKIVGK------------ED 289

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDP 212
              + YE  +  +  E+ +    + TP  VV      + +     F K        + DP
Sbjct: 290 AFLHFYEDFLASYNPELRKSKGVYYTPLPVVEFIVNSVDEILKDRFGKRLHDENVRILDP 349

Query: 213 TCGTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVC--VAGMLIRRL 264
             GTG FL   +  V     H       K   +   +G E+    + V      ML+   
Sbjct: 350 ATGTGTFLATVLERVHKNVKHTLFHVYLKERLLKNIYGFEILISPYLVAHLKLSMLLHNW 409

Query: 265 ESDPRRDLSKNIQQGSTL 282
               R +   N+   + L
Sbjct: 410 HITLRGEERFNVYLTNAL 427


>gi|57865887|ref|YP_190007.1| hypothetical protein SERP2464 [Staphylococcus epidermidis RP62A]
 gi|57636545|gb|AAW53333.1| conserved domain protein [Staphylococcus epidermidis RP62A]
          Length = 48

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 14 FIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
           +W+  + L G+    ++  + L    L+ +    E    
Sbjct: 9  KLWQADDKLRGNMDADEYKNIALGLIFLKYISDCFEEKYE 48


>gi|42518836|ref|NP_964766.1| hypothetical protein LJ0911 [Lactobacillus johnsonii NCC 533]
 gi|41583122|gb|AAS08732.1| hypothetical protein LJ_0911 [Lactobacillus johnsonii NCC 533]
          Length = 333

 Score = 60.8 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 119/354 (33%), Gaps = 49/354 (13%)

Query: 98  NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152
            +L+  +  SFS      F+  +  +   ++E        + ++ + +  ++   D +P 
Sbjct: 16  EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   I+  L  +  ++ +       TP  V  +   +         K  P   +T+ DP
Sbjct: 72  ALKVQIFTLLALKAITQDASDYNLMPTPSVVATIIALIW-------QKIVPTGKKTVVDP 124

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             GTG  L    + +      +         G + E     +   G  +  L+ D     
Sbjct: 125 AIGTGNLL---YSVIRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                    L  D +  ++    LS+ P G  +  D +A   E+   E   F        
Sbjct: 178 ----YCQDAL--DPWMIEKADVVLSDLPVGY-YPLDNNAQRYENHAKEGHSFAHT----- 225

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+  + N L+         A ++    LF G    G +E   WL +   I+AIV 
Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           LP ++F        + +  N        +V +  +++     S+     K    
Sbjct: 274 LPDNMFLSQIQQKSILVFQNHGDHAVEREVLVAKLDSLKGPESLVAFNMKLNDW 327


>gi|323126876|gb|ADX24173.1| hypothetical protein SDE12394_03250 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 541

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 93/271 (34%), Gaps = 32/271 (11%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG-GFLTDAM 224
           +     +    + TP+ + +L          +L  ++   I  ++DP  G+G   LT A 
Sbjct: 9   YSDNDRKKNGIYFTPKKIANLM------GCYSLHIKNTIDIPNIFDPAIGSGIFLLTIAK 62

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283
             V                G ++  E   +    +     E         N+ Q  +LS 
Sbjct: 63  ELVKSSNVDIIKIIENHLFGVDIVKENVILSKILLGTLSYELKRSLPKKFNLVQLDSLSL 122

Query: 284 -----KDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                K LF+ + F   +SNPP+  G++   D     K + N   G     +P       
Sbjct: 123 TEKSVKSLFSIEHFDIVISNPPYVSGEQISDDTKIYFKHYPNTVYGNPDLYIP------- 175

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F       L+            ++ +  F  + G    ++R +L     +  ++   +D
Sbjct: 176 -FFELGLKLLKPSG-----IGAFITPNSYFRSQNG---KKLRAYLRNKTEVIKLINFNSD 226

Query: 397 L-FFRTNIATYLWILSNRKTEERRGKVQLIN 426
           L F   +  + +     +  ++++ ++  ++
Sbjct: 227 LVFDDISHYSAINFFIKKSNDQQQNRMYFLD 257


>gi|160882500|ref|ZP_02063503.1| hypothetical protein BACOVA_00451 [Bacteroides ovatus ATCC 8483]
 gi|156112081|gb|EDO13826.1| hypothetical protein BACOVA_00451 [Bacteroides ovatus ATCC 8483]
          Length = 272

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 24/186 (12%)

Query: 91  LGSTNTRNNLESYI-ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
           L   N  N+  +YI   FS  A    + + +      ++   +L    +  +       +
Sbjct: 26  LDPVNVFNDFLTYIIHGFSPGAPP-LQSWKYKRQ-QNMKFMQMLTGWVRLMASRIKDDTS 83

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             D    ++Y  L+ +   +       F TP  +  L        +           + +
Sbjct: 84  WYDP-FGDLYMALVSKSAQQS---QGQFFTPVHICDLMVLCTQTEEK-------KTGQRM 132

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            DPTCG+G  L            +H   P     G+++      + V  MLI     +  
Sbjct: 133 GDPTCGSGRLLLA----------YHARNPGNYLIGEDINRTCCLMTVCNMLIHGCVGEVI 182

Query: 270 RDLSKN 275
              S N
Sbjct: 183 CHDSLN 188


>gi|86739811|ref|YP_480211.1| putative DNA methyltransferase [Frankia sp. CcI3]
 gi|86566673|gb|ABD10482.1| putative DNA methyltransferase [Frankia sp. CcI3]
          Length = 1100

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 43/237 (18%)

Query: 133 LYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L  + +  S ++       +     ++YE+ + R+ +++ + +  + TPR+VV     L 
Sbjct: 294 LDLLTRTISSVDWPAIRNGNRDAYLHLYENFLTRYDAQLRQQSGSYYTPREVVEHMVRLA 353

Query: 192 LDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------IPPI 239
            D       +  G       + DP  GTG FL   +  VA+  S                
Sbjct: 354 EDVLRTRLGKDHGYADPDVRIVDPAMGTGTFLHAIIERVAETASEGGGEGMEIDAVAQLA 413

Query: 240 LVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------ 291
              +G EL+   +AV       L+R  E    R+   N+    TL       ++      
Sbjct: 414 ERLYGFELQIGPYAVAELRTSDLLRAEEIPAPREGL-NLFLTDTLDSPFSDTQKALFGYR 472

Query: 292 -----------------FHYCLSNPPFGKKWEK----DKDAVEKEHKNGELGRFGPG 327
                                + NPP+  K +K     +  +  E++        PG
Sbjct: 473 ELAASRQRADQVKGNVPVTVVIGNPPYDDKAKKRGKWAEKKIPGENRTPLDAFRHPG 529


>gi|289810867|ref|ZP_06541496.1| hypothetical protein Salmonellaentericaenterica_43567 [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 155

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 6/126 (4%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESY---IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
           Y    Y    L S   +  L+ Y   +    ++ K + +   F +    + +   + ++ 
Sbjct: 27  YLPEGYRWDDLKSRIDQEQLQFYRKMLVHLGEDKKKLVQAV-FHNVCTTITEPKQITELV 85

Query: 138 KNFSGIELH--PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
            N   ++ +            ++YE L+++  +E   GA  + TPR ++     LL    
Sbjct: 86  SNMDSLDWYSGTRGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTIIHLLKPQP 145

Query: 196 DALFKE 201
             + + 
Sbjct: 146 REVVRR 151


>gi|322509984|gb|ADX05437.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
          Length = 258

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 23/181 (12%)

Query: 103 YIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           Y   F+ N +    +  +      RL+   L Y +              P  V+ +IY  
Sbjct: 54  YQNLFNHNIENEYLQRINRYDVSGRLKIKKLFYLLVDL-----CEAKGEPYDVLGSIYME 108

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L        ++    + TP +V +L   +++       +     + ++ DP CG G  L 
Sbjct: 109 L-----EIGNDHIGQYFTPSEVSNLCAQVVMTDLKKQLE--EEGVISISDPACGAGSTLL 161

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +    +  S  ++   L     +++     +C   + +          +   I  G T
Sbjct: 162 STVKLCLE--SKIQVQDHLYIEAADIDRNVALMCYIQLSL--------WAVPCRIFVGDT 211

Query: 282 L 282
           L
Sbjct: 212 L 212


>gi|300724413|ref|YP_003713733.1| hypothetical protein XNC1_3596 [Xenorhabdus nematophila ATCC 19061]
 gi|297630950|emb|CBJ91627.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 228

 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI + ++A +  +I + FS + L     P+  + +++  L         +  + F TP 
Sbjct: 55  KTINKYKRADV-DRIVQLFSHVVLGLAQEPNDFLGSVFMRL-----ELGDKDLQQFFTPW 108

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   + L     L +  P    TL +P  G G     A + + + G        L 
Sbjct: 109 SVARMMAQMQLHDAAGLLQTQP--FVTLCEPCVGAGCITLAAADVLRELGHD--PLCSLW 164

Query: 242 PHGQELEPETHAVCVAGMLIRRL 264
            +  +++P    +      +  +
Sbjct: 165 VYAIDIDPLAAVMAYIQFSLTGI 187


>gi|225028436|ref|ZP_03717628.1| hypothetical protein EUBHAL_02710 [Eubacterium hallii DSM 3353]
 gi|224954234|gb|EEG35443.1| hypothetical protein EUBHAL_02710 [Eubacterium hallii DSM 3353]
          Length = 457

 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 57/439 (12%), Positives = 127/439 (28%), Gaps = 82/439 (18%)

Query: 30  DFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLS 89
           ++    +     + L         ++ E Y       + +   ++VA +  +  S  S  
Sbjct: 25  EYRDSCVFLLFYQYLC---LKHGDSLEEAYKPGELVKMAIRGKLQVASFLKFMESASSFL 81

Query: 90  TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            L + + +                   +F F  ++ R+          + F       D 
Sbjct: 82  HLLNKDFQ-----------------LTEFSFYKSLERVHSLEKQKSYARFFRKFLKKIDG 124

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
                  +  E L+R++             P+  + L         D    E    +   
Sbjct: 125 W------DCKEELLRQY-------------PKLFILLIAEFAKLKKDTYISEELSELYHK 165

Query: 210 YDPTC-------GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           +   C       G    L     +     S       +  +G   E E   +      +R
Sbjct: 166 F--FCRRFHKKKGKCKVLFPEFQYGILASSIISTEKNIEIYGYTKEQEYIDIFTIVCYMR 223

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            +  D      K   +      D          L   P G +     + +     +    
Sbjct: 224 GIPLDSLHLFMKKDWRAIRDLPDG-----ADNILIFMPEGVEAG---EYIASPKLSLGKE 275

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
           +F  G      G   FL+   + L+      G  A V   + L+       E++IR++L+
Sbjct: 276 QFYAGT----KGEFPFLLTAISCLKE----NGFLAAVFPGAMLYR---EGREAQIRKYLV 324

Query: 383 EN-DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           E  + ++ I+ LP  +F     A  +      +  +    +   + +++ +         
Sbjct: 325 EELNCLDTIMLLPDSIFHSIGQAEAILFFQMNRERK---DILFFDCSEIES--------- 372

Query: 442 RIINDDQRRQILDIYVSRE 460
             ++ +Q   I  ++  R+
Sbjct: 373 --LDKEQIDTIDQLWSERK 389


>gi|307942694|ref|ZP_07658040.1| putative type I restriction-modification system methyltransferase
           subunit [Roseibium sp. TrichSKD4]
 gi|307774099|gb|EFO33314.1| putative type I restriction-modification system methyltransferase
           subunit [Roseibium sp. TrichSKD4]
          Length = 999

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 50/277 (18%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           V+S  YE  +R   SE  +    + TPR +  L     +       K    +   + DP 
Sbjct: 275 VLSQAYELYLRSHASERQKKQGGYYTPRPIADLMVRASIRALQHENKC---VDAKILDPA 331

Query: 214 CGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            G G FL  A   +                 +        G +++         G+ +  
Sbjct: 332 AGAGVFLLTAFRELVAEKWRFDGKRPNTKTLRTILYNQITGLDIDEAALRFAALGLYLMS 391

Query: 264 LESDPRRDLSKNIQQ--------------GST----------LSKDLFTGKRFHYCLSNP 299
           +E DP       ++               G T          L  +     ++   + NP
Sbjct: 392 IELDPTPKPVDKLRFKNLRGNVLHRLVADGDTEGAQLGSLGPLVGEEH-NAKYDIVIGNP 450

Query: 300 PFGK-----KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           P+        W   ++ V++  +   +    P LP      + F+    +  +      G
Sbjct: 451 PWASGTKLPDWNLVQNNVKQIAEKRGIKNSKPLLPNEV-LDLPFVWRAMDWAKPD----G 505

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           + +  L +  LF      G +E R  + E   I +IV
Sbjct: 506 QISFALHARMLFQQG--DGMAEARASIFEALDITSIV 540


>gi|295087087|emb|CBK68610.1| Type I restriction-modification system methyltransferase subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 197

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 58/146 (39%), Gaps = 18/146 (12%)

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           ++ +  +L+      GRAA+++    LF       +  I+  LL++  +  I+ LP  +F
Sbjct: 1   MVLIMYRLK----ANGRAAVIVPDGFLF--GVDGAKLAIKTKLLKDFNLHTIIRLPGSIF 54

Query: 399 FR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDDQRRQIL 453
              T+IAT +   +N + E+          T  +     +G     K + +  +  + I 
Sbjct: 55  SPYTSIATNILFFNNERVEDAPDGY-STKETWFYRLDMPDGYKHFSKTKPMKLEHCQPIK 113

Query: 454 DIYVSREN------GKFSRMLDYRTF 473
           + +  R+        + SR    +  
Sbjct: 114 EWWHDRKEIVSQDGNEKSRCFSVQDL 139


>gi|209524848|ref|ZP_03273394.1| DNA or RNA helicase of superfamily II [Arthrospira maxima CS-328]
 gi|209494727|gb|EDZ95036.1| DNA or RNA helicase of superfamily II [Arthrospira maxima CS-328]
          Length = 1026

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 86/303 (28%), Gaps = 51/303 (16%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY---- 103
            E   +   +K    G   +DL    +     F   +    S L   +   N+       
Sbjct: 156 WEKAAAEFGDKVRGLGEKLVDLIESQRKTNPQF-IGAFQGFSNLCRQSINPNISDAAVEE 214

Query: 104 --IASFSDN--AKAIFEDFDFSS------TIAR---------------LEKAGLLYKICK 138
             I         + IF + DF+        I +               L      Y+  +
Sbjct: 215 MLIQHLLTERIFRQIFNNPDFTRRNIIAVEIEKVIEALTSKSFSRAHFLGDVDYFYRALE 274

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
             +             ++ +YE   + F   V++      TP+ +V      + +     
Sbjct: 275 EAAATITEYSEKQ-HFLNTVYERFFQGFAVNVADTHGIVYTPQSIVDFMVRSVDEILRTE 333

Query: 199 FKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           FK+S       + DP  GTG F+   M  +      HK       H  E+    + +   
Sbjct: 334 FKKSLSDKGVHILDPFVGTGNFIMRIMREIRKTALSHKYQQE--LHCNEVMLLPYYIASM 391

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSK------DLFTGKRFH-----------YCLSNPP 300
            +    L +  +      I    T S       DLFT +                + NPP
Sbjct: 392 NIEHEYLTATGQYQPFDGICLVDTFSVQEALQLDLFTPENTQRVKQQQSSPIFVVIGNPP 451

Query: 301 FGK 303
           +  
Sbjct: 452 YNV 454


>gi|313126079|ref|YP_004036349.1| n-6 DNA methylase./eco57i restriction endonuclease [Halogeometricum
           borinquense DSM 11551]
 gi|312292444|gb|ADQ66904.1| N-6 DNA Methylase./Eco57I restriction endonuclease [Halogeometricum
           borinquense DSM 11551]
          Length = 1295

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 97/363 (26%), Gaps = 68/363 (18%)

Query: 38  FTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
                 L+    +   +  VR  +  +  SN +     K     F+             N
Sbjct: 235 LMFFYYLQKKGWIGERKDFVRWFHQQYEESNEEDVFHEKWLSALFFEGMNSPEGGEIEAN 294

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF----------SGIEL 145
             +++E+ I         +F+  +   +   L  +  L  + + F               
Sbjct: 295 LPSDVETAILGLPYMNGGLFQPTEEDESNTFLSDS-ALKSVIEEFLEQYNFTVTEESPYD 353

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA------------------ 187
               V   ++  IYE LI     +    A  F TPR  V L                   
Sbjct: 354 IDVAVDPAMLGKIYESLI---AEQERGEAGIFYTPRVEVDLMCRMALYEQFCDHANDLDA 410

Query: 188 ------TALLLDPDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGS 232
                    +         ES G             + DP CG+G FL      V +   
Sbjct: 411 EGKQRIVEFIFSEPQDWDAESNGETEQLENILHELRIVDPACGSGAFLVGMKQVVTELYR 470

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                P      Q +    + V +    +R  E      L +         ++    +R 
Sbjct: 471 KLGKTPDYHLKEQIINENLYGVDIKDWAVRVAEFRLWLSLVEG--------EEQLPDQRP 522

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG--PGLPKISDGSMLFLMHLANKLELPP 350
                 P F  K +     ++K       G F     L +  DG    L+    +L+   
Sbjct: 523 VL----PNFSFKLKVGDSLIQK-----LDGEFVSLDTLTRTLDGDTAGLLTELKELKREH 573

Query: 351 NGG 353
             G
Sbjct: 574 FEG 576


>gi|282882760|ref|ZP_06291367.1| modification methyltransferase [Peptoniphilus lacrimalis 315-B]
 gi|281297421|gb|EFA89910.1| modification methyltransferase [Peptoniphilus lacrimalis 315-B]
          Length = 298

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 110/356 (30%), Gaps = 77/356 (21%)

Query: 207 RTLYDPTCGTGGFLTDAM-NHVAD----CGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             + D   G+G FL  AM N + +         +       +G E + E  A+  A MLI
Sbjct: 1   MKILDHCAGSGAFLVKAMANMIKEVGGVNTKEAEDIKQNKLYGIEFDREIFALACANMLI 60

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                   +D   N++Q  T  K+       K     L NPP+             E K 
Sbjct: 61  H-------KDGKTNLEQFDTREKEACKWIKSKNITKVLMNPPY-------------ERKY 100

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           G                      +   +      G + A +L    L        E +  
Sbjct: 101 GCK-------------------KIVTNVLDNVPAGIKCAFILPDKKL--------EKDRM 133

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
             LL+   ++ I+ LP  LF    + T +++    K ++ +         D    ++N+G
Sbjct: 134 HSLLKKHTLDMIIKLPEKLF-DAGVTTSVFVFETGKPQKDKKIFACYMEDDGLERVKNQG 192

Query: 439 KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM-SFILDKTGLAR 497
           +              DI    +  +             R KV        +I  K  L+ 
Sbjct: 193 RH-------------DIKNKWKEIE------KYWLEVARTKVDTKYNTHQWIDSKEYLSY 233

Query: 498 LEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
            +    +       +   +D +    ++I    + E  + + +  +E K  K+   
Sbjct: 234 QKPQKPFEIYEEDFKKTIIDFI-LFEEKIDVKEFNEKLLNQVLYKSEYKDGKLMLD 288


>gi|254562734|ref|YP_003069829.1| hypothetical protein METDI4368 [Methylobacterium extorquens DM4]
 gi|254270012|emb|CAX25998.1| hypothetical protein METDI4368 [Methylobacterium extorquens DM4]
          Length = 909

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 24/216 (11%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP  +        L     L   +      + D  CG+G FL +A+  +         
Sbjct: 257 HFTPPSLARSLCEQALSSLGGLASRAN---VVVADFACGSGAFLVEALRSLER----GGY 309

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              +   G+++      +    + +   E   R     ++    TL  +          +
Sbjct: 310 AGRVTLVGRDISTAAIDMARFVLDMAGAEWPGRGRFDVDLAVADTLRSEGLP--MADLIV 367

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            NPPF       +D      ++   GR   G P IS   M F++     L       G  
Sbjct: 368 MNPPFAPWQGLSEDERSVLAESL--GRHKAGRPDIS---MGFVLRALGALRTD----GAL 418

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLEND--LIEAI 390
           A++L +S L    A       R  + E     ++A+
Sbjct: 419 AVLLPASALETKAAEG----WRGRISEGRSVYLDAV 450


>gi|317010154|gb|ADU80734.1| putative type II DNA modification enzyme (methyltransferase)
           [Helicobacter pylori India7]
          Length = 678

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 104/302 (34%), Gaps = 71/302 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  + R  G    +  +  +TP     L   L     D+           ++D   G
Sbjct: 344 GKLFNEMYRWLGFTQDKLNDVVLTPPYAATLLARLSKVNKDSF----------VWDFATG 393

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  +MN +            +              G E+ P+ H + V  M++   
Sbjct: 394 SAGLLVASMNLMIEDAKKCITSPEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG- 452

Query: 265 ESDPRRDLSKNIQQGSTLS-KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D S  I    +LS  D        + +  + NPP+                   
Sbjct: 453 ------DGSSQILNQDSLSGFDGKVNDEAFKANAFVLNPPYSASGNG------------- 493

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M+F+     K++      G A++++ SS    G   + E  +R  
Sbjct: 494 ---------------MVFVEQALAKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++   +  N  K
Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588

Query: 440 KR 441
            +
Sbjct: 589 AK 590


>gi|9622223|gb|AAF89680.1| adenine-specific methyltransferase [Bacillus sp. LU11]
          Length = 568

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 43/253 (16%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--- 224
               +      TP+ V +L  +  L              RT+ +P  G G FL       
Sbjct: 16  ENKKDMLGQVFTPQGVANLMVSFGL----------NTKPRTILEPCFGEGVFLESIQKRK 65

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            +VA+      +    V + +             + +  ++    + +            
Sbjct: 66  EYVANDTKIIGVEIDPVLYERVRSKFP------NLELYNMDFFDFKGV------------ 107

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                      + NPP+ ++    +      +K+  + R       IS  S L++  +  
Sbjct: 108 -------VDCVIMNPPYIRQELLREKMPRFLNKSDIITRLPLLQYPISSRSNLYVYFIIK 160

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
              +    G   AI+ +        A    +  +++LL+N  I+AI+    D+F   ++ 
Sbjct: 161 AWSILSEKGSIIAIIPN-----TWMAAEYGNSFKKFLLQNFWIKAIIQFNKDVFPDADVE 215

Query: 405 TYLWILSNRKTEE 417
           + +  LS  K  E
Sbjct: 216 SCILYLSKEKDSE 228


>gi|301646759|ref|ZP_07246616.1| conserved domain protein [Escherichia coli MS 146-1]
 gi|301075058|gb|EFK89864.1| conserved domain protein [Escherichia coli MS 146-1]
          Length = 110

 Score = 60.4 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK--YLAFG 63
              A L   IW+ A D+ G     DF + +L     R +         A  +   Y    
Sbjct: 7   QQRAELHRQIWQIANDVRGSVDGWDFKQYVLGALFYRFISENFSSYIEAGDDSICYAKLD 66

Query: 64  GSNIDL---ESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
            S I     +  +K  GY  Y  S+   +     NT + L + + 
Sbjct: 67  DSVITDDIKDDAIKTKGYFIY-PSQLFCNVAAKANTNDRLNADLN 110


>gi|23428558|gb|AAL23675.1| TaqII restriction endonuclease [Thermus aquaticus]
          Length = 1105

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 96/333 (28%), Gaps = 58/333 (17%)

Query: 40  LLRRLECALEPTRSA-------VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
            LR  E  LE  R         +RE++        D   F     Y+   T  + L+   
Sbjct: 172 FLR--EAVLEEVRENPNGELARLREEWRKNLLPEGDERVFADA--YAQLITYGFLLAAAL 227

Query: 93  STNTRN-NLESYIASFSDNAKAIFEDFDFSSTIARLEK----AGLLYKICKNFSGIELHP 147
            +      LE  +         + E    ++    L +      LL +  +         
Sbjct: 228 DSGEEPLYLERALELLEGRYGLLMEALFVANHPRLLAEIRPAYDLLRRALRAVDPSVFRV 287

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG--- 204
             V   +    YE  ++ +  ++ +    + TP  VV     L+ +     F  + G   
Sbjct: 288 QGVDPWL--YFYEDFLQAYDPDLRKDMGVYYTPVPVVRAMVRLVDEALKEGFGLAEGLAH 345

Query: 205 MIRTLYDPTCGTGGFLTDAMN---------HVADCGSHHKIPPILVPHGQELEPETHAVC 255
              T+ DP  GTG FL   +          +       +        HG EL    +AV 
Sbjct: 346 EKVTVLDPAMGTGTFLLATLERALANMASLYGRGYRGQYAKEVASRLHGIELMVGPYAVA 405

Query: 256 VAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFT-----------------------GK 290
              +   I+        +   N+    TL                              K
Sbjct: 406 QLRLSQAIQGEGGSLPEEGL-NLYLADTLEAPEAPPLEQVFFYERLAEERKRAAELKRDK 464

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                L NPP+     + +   E+E K G + R
Sbjct: 465 PILVVLGNPPY--DRVEGESQEERERKGGWVLR 495


>gi|10954534|ref|NP_044172.1| hypothetical protein MJECS02 [Methanocaldococcus jannaschii DSM
           2661]
 gi|2496196|sp|Q60301|Y3402_METJA RecName: Full=Uncharacterized adenine-specific methylase MJECS02
 gi|1522636|gb|AAC37060.1| hypothetical protein MJ_ECS02 [Methanocaldococcus jannaschii DSM
           2661]
          Length = 1181

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 90/333 (27%), Gaps = 64/333 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ LE      R  +R  Y  +  SN+ +  +       FY     +       N R
Sbjct: 297 LIFIKFLEDKGIVPRDLLRRTYEDYKKSNVLINYYDAYLKPLFYEVLN-TPEDERKENIR 355

Query: 98  NNL----ESYIASFSDNAKAIFEDFDFSSTIA-RLEKAGLLYKICKNFSGIELHPDTVP- 151
            N       Y+         +F   +  + ++  ++   ++ ++       +    T   
Sbjct: 356 TNPYYKDIPYLNG------GLFRSNNVPNELSFTIKDNEIIGEVINFLERYKFTLSTSEG 409

Query: 152 -------DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT---------------- 188
                    ++  +YE LI     +  +G   + TP ++                     
Sbjct: 410 SEEVELNPDILGYVYEKLINILAEKGQKGLGAYYTPDEITSYIAKNTIEPIVVERFKEII 469

Query: 189 ------ALLLDPDDALFKESPGMIR---------------TLYDPTCGTGGFLTDAMNHV 227
                  +     D +  E   +                  + DP  G+G FL  A+  +
Sbjct: 470 KNWKINDINFSTLDEILNEDSKIAENKHILRAFLDELDKIRILDPAVGSGHFLISALKEL 529

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--D 285
                             ++  E   + +  +    ++ D        ++    L +  D
Sbjct: 530 LQIKKRIYYLLREEM---DIYKEKLGIILNNLY--GVDIDDIAVEIAKLRLWLALIENLD 584

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +   KR    L N  +  +          E+  
Sbjct: 585 VEALKRGEVLLPNIEYNVRCGNSLVGWIDENLK 617



 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 60/183 (32%), Gaps = 30/183 (16%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             + F   + NPP+G      +  + K     E                +F+  + +  +
Sbjct: 754 KEEGFDVIIGNPPYGNLLSPTEKEIMKRRDTPEFD--------------IFVTFIVHSSK 799

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
           L  N G     ++ SS       G   S +R+ L     ++ ++ LP D+F    +   +
Sbjct: 800 LLKNEG-YLGFIIPSSF----GTGVRYSNLRKELFTKMCLKKLIYLPFDVFSGAYVDNCI 854

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            IL   K  +    V +              KK + I+ + +  +   Y    N    R+
Sbjct: 855 IILHK-KPPKSEDLVLIY----------AFPKKTKKISFEFKNDLFIEYSKILNDPKCRI 903

Query: 468 LDY 470
              
Sbjct: 904 FPK 906


>gi|150024141|ref|YP_001294967.1| type I endonuclease-methyltransferase fusion protein
           [Flavobacterium psychrophilum JIP02/86]
 gi|149770682|emb|CAL42146.1| Probable type I endonuclease-methyltransferase fusion protein
           [Flavobacterium psychrophilum JIP02/86]
          Length = 1011

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 115/390 (29%), Gaps = 73/390 (18%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L  LE      +         +G  ++  ES++ +      N        L      +
Sbjct: 196 LFLLYLEDRGATKKE-------FYGEFSLKAESYLDLLKQGEVNHVYSLFEKLAEDFNGS 248

Query: 99  NLESYIASFSDNAKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                    +   +   +     F+S   +      L+   + F+   +  +     ++S
Sbjct: 249 LFNIEENEINLVTREHLDLIRQCFTSGYTK-SNQIKLFSYWRLFNFSIIRIE-----LLS 302

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            IYE+ +     +  +    F TP         L+L+    +            DP+CG+
Sbjct: 303 EIYENFLSELDKKAKKNTGTFYTPPS----LVELILNEKLPVRNNETDYNVKTLDPSCGS 358

Query: 217 GGFLTDAMNHVADCGSHHKIPP-----------ILVPHGQELEPETHAVCVAGM------ 259
           G FL  +   +     +                     G EL+ ++  V    +      
Sbjct: 359 GIFLVQSFKRLVKRYENKHNSKLNDFNILIDILKSNIFGIELDGKSIKVAAFSLYLALLD 418

Query: 260 -----------------LIRRLESDPRRDLSKNIQQGSTLSK--DLFTGKRFHYCLSNPP 300
                            LI   E    ++   N+ +  T+S   ++   + F   + NPP
Sbjct: 419 NLDPKTDWWNGTIKFPYLINDSEDTTLKEQGNNLFKRDTISDLSEIKKLQNFDLIVGNPP 478

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG   +K    +    K     +             L  +H A  L       G+ A++ 
Sbjct: 479 FGT--KKLLPTITAYCKKESFAQEMV----------LPFLHKATLLAPK----GKIALIF 522

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
           ++  L N          R+WL     +E +
Sbjct: 523 NTKVLTNTG--GTYQNFRKWLFNETYVEKV 550


>gi|262372344|ref|ZP_06065623.1| predicted protein [Acinetobacter junii SH205]
 gi|262312369|gb|EEY93454.1| predicted protein [Acinetobacter junii SH205]
          Length = 142

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 12/108 (11%)

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHA 253
             P     + DP CGT GFL  A  ++              +   +    G EL P T  
Sbjct: 4   MQPKPSEVIQDPACGTAGFLIAADAYIRQHHDLYALTEQETQFYTLDAFVGVELVPNTRR 63

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           +     L+  +  +        I+ G++L        +    L+   +
Sbjct: 64  LAQMNCLLHDIGGEQGA-----IKLGNSLGPVGQALAKADVQLATLNW 106


>gi|256810317|ref|YP_003127686.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
 gi|256793517|gb|ACV24186.1| N-6 DNA methylase [Methanocaldococcus fervens AG86]
          Length = 1012

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 63/198 (31%), Gaps = 28/198 (14%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
            +  ++L  Y+    D    I  + D    I ++E++                  +  + 
Sbjct: 249 KHIASDLPDYLDWIVDEIITILNNID----IKKIEES---------------FKISGKED 289

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDP 212
              + YE  +  +  E+ +    + TP  VV      + +     F K        + DP
Sbjct: 290 AFLHFYEDFLASYNPELRKSKGVYYTPLPVVEFIVNSVDEILRDRFGKRLHDENVRILDP 349

Query: 213 TCGTGGFLTDAMNHVADCGSHH------KIPPILVPHGQELEPETHAVC--VAGMLIRRL 264
             GTG FL   +  V     H       K   +   +G E+    + V      ML+   
Sbjct: 350 ATGTGTFLAVVLKRVHKNVKHTLFQAYLKERLLKNIYGFEILISPYLVAHLKLSMLLHNW 409

Query: 265 ESDPRRDLSKNIQQGSTL 282
               R +   NI   + L
Sbjct: 410 HITLRGEERFNIYLTNAL 427


>gi|153955312|ref|YP_001396077.1| methyltransferase [Clostridium kluyveri DSM 555]
 gi|219855732|ref|YP_002472854.1| hypothetical protein CKR_2389 [Clostridium kluyveri NBRC 12016]
 gi|146348170|gb|EDK34706.1| Predicted methyltransferase [Clostridium kluyveri DSM 555]
 gi|219569456|dbj|BAH07440.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 562

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 98/327 (29%), Gaps = 72/327 (22%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   V+  +YE   +       +    F TP  +V       L   D         
Sbjct: 1   MEKRYDSTVLGEVYE---KSMNKSERKERGSFYTPYFIVEYIVENTLSNLDVKLN----P 53

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------------------- 242
              + DP+CG+G FL  A + +    + +                               
Sbjct: 54  FVKVLDPSCGSGYFLLKAYDILMRKFNENLESIRCKFKDERYIIETKNGLKNIYGLEYWQ 113

Query: 243 -------------HGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSK---- 284
                        +G +L+ +   +    ++ +  +  + +     NI   ++L +    
Sbjct: 114 YSNLSYHILKECIYGADLDEKAVELAKINLIGKSGINFNFKN----NIICCNSLIRWEKE 169

Query: 285 ---------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                      F  +++ Y L NPP+     K K  +E   K     +   G   + +  
Sbjct: 170 HKEHEFSHIGEFWEQKYDYILGNPPWVSLSRKHKKDIEDNLKE-YYSKNYEGNTYLPNLY 228

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             F+      L++    GGR   ++         +     + R+ LLE   I  +V    
Sbjct: 229 EYFIKRSMEILKV----GGRFGFIIPD----RLASNLQYKDFRKKLLEKYNIINVVF--E 278

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKV 422
             F   N  T + I  N+ +   + KV
Sbjct: 279 IKFPEINTDTMIIIAENKYSRHNKIKV 305


>gi|325996727|gb|ADZ52132.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori 2018]
 gi|325998321|gb|ADZ50529.1| putative type II restrcition enzyme/ methyltransferase
           [Helicobacter pylori 2017]
          Length = 599

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 140/449 (31%), Gaps = 113/449 (25%)

Query: 40  LLRRLECA------LEPTRSAVREKYLA----FGGSNIDLESFVKVAGYSFY-----NTS 84
            ++R++        LE  R    ++             D E          Y       +
Sbjct: 186 FIKRVDTLSLSDEDLERIREKKNQEIEDCLTRLNNDIYDKEKNFLSEHNRVYLVIASIIA 245

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG------LLYKICK 138
              +S L +   + +L+S   +   +   I            L +        LL  + +
Sbjct: 246 NLGISNLVAPLNKEDLKSSDENGERDGDKILRKIRSFLKHKHLSEEKERSIISLLEPLLR 305

Query: 139 N----------------FSGIE-----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           N                FS I       +   +       ++  + R  G    +  +  
Sbjct: 306 NENNNKAINGESRLKRCFSEIVDSLGVYYKIGLSTDFTGKLFNEMYRWLGFTQDKLNDVV 365

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------- 227
           +TP     L   L     D+           ++D   G+ G L  +MN +          
Sbjct: 366 LTPPYAATLLARLSKVNKDSF----------VWDFATGSAGLLVASMNLMIEDAKKRITS 415

Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KD 285
             +              G E+ P+ H + V  M++         D S  I   ++LS  D
Sbjct: 416 PEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG-------DGSSQILNQNSLSGFD 468

Query: 286 LFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                +    +  + NPP+                                  M+F+   
Sbjct: 469 GKVNDKEFKANAFVLNPPYSASGNG----------------------------MVFVEQA 500

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401
             K++      G A++++ SS    G   + E  +R  +LE   + A + +P DLF   +
Sbjct: 501 LAKMQS-----GYASVIIQSSA---GSGKAKEYNVR--ILEKHTLLASIKMPLDLFIGKS 550

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL 430
           ++ T++++    +  + + +V+ IN ++L
Sbjct: 551 SVQTHIYVFRVNEKHDAKQRVKFINFSNL 579


>gi|308062637|gb|ADO04525.1| adenine specific DNA methyltransferase [Helicobacter pylori Cuz20]
          Length = 1197

 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRENKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   NP F  +    ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELSNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495


>gi|253681420|ref|ZP_04862217.1| modification methylase family protein [Clostridium botulinum D str.
           1873]
 gi|253561132|gb|EES90584.1| modification methylase family protein [Clostridium botulinum D str.
           1873]
          Length = 590

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 110/372 (29%), Gaps = 53/372 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRV---------MSNIYEHLIRRFGSEVSEGAEDF 177
           L+K   LY I      I      +              S+ Y  L  R   E  +     
Sbjct: 6   LDKLNELYNIINTPIDITFKNMAIDKYKKVLNIGKEKFSDTYMDLKER---EKIKEKGIV 62

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KI 236
            TP+++ +     ++  +D            + DP CG G  +      +      + K 
Sbjct: 63  YTPKEIANYIVENVIFKED----IINNPYIKILDPACGCGDIIIVCYEKLKTIYEENLKF 118

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI------QQGSTLSKDLF--- 287
              +     + +     +    +    ++    + L+ ++         +   K  F   
Sbjct: 119 INEVNGINLKKQDIPKHIVKNNLYGFDIDEIAIKILAVDLFKASGYFYENNFKKQDFLLE 178

Query: 288 -TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              ++F+  + NPP+         +++KE+       F        D S  F     N L
Sbjct: 179 KLSEKFNIIVGNPPY-----VGHKSIDKEYSKKLKINFKEIYKDKGDISYCFFQQAINNL 233

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------ 400
                     +     SP       SGE E+R+ L E   +  IV      F+       
Sbjct: 234 SKKGKLSFITSRYFIESP-------SGE-ELRKILKEVCSLYKIVD-----FYGIRPFKR 280

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
             +   +  L+N   +  + ++Q+I                  +   +  +   I  +  
Sbjct: 281 IGVDPVIIFLTN--EQNIQEEIQVIKPQKFSKKEEKNFYNSLFLKKGECYKSFYINKNYL 338

Query: 461 NGKFSRMLDYRT 472
           N K   + D + 
Sbjct: 339 NNKGWILRDKKE 350


>gi|270284038|ref|ZP_06193809.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
 gi|270277980|gb|EFA23834.1| restriction enzyme BgcI subunit alpha [Bifidobacterium gallicum DSM
           20093]
          Length = 185

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 38/166 (22%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNH---VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             R L DPTCGT GFL  AM+    +AD  +  K       HG EL+    AV  A M++
Sbjct: 46  KDRVLLDPTCGTAGFLISAMHRMLTLADTDAQKKNIKKKQLHGFELQSNMFAVAAANMIL 105

Query: 262 RRLESDPRRDLSKNIQQGSTLSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           R       +D + N++    L K+      K     L NPP+ +  + D +  E      
Sbjct: 106 R-------KDGNSNLECCDFLRKNPAQVQLKGATVGLMNPPYSQGTKADPEQYEIS---- 154

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                             F+ H+ + L +      RAA+++  S +
Sbjct: 155 ------------------FIEHMLDSLAIDA----RAAVIVPQSSM 178


>gi|329913606|ref|ZP_08275980.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
 gi|327545303|gb|EGF30547.1| Type I restriction-modification system, DNA-methyltransferase
           subunit M [Oxalobacteraceae bacterium IMCC9480]
          Length = 221

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 7/99 (7%)

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWI 409
             GGRAA+++    LF   +     E+RR ++E   ++A+++LP+ +F     ++T + +
Sbjct: 23  KPGGRAAVIVPDGVLF--GSSKAHKELRRMIVEEQKLDAVISLPSGVFKPYAGVSTAILL 80

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            +   +      V   +   +     +   KR+ +  + 
Sbjct: 81  FTKTNSG-GTENVWFYD---MKQDGWSLDDKRQPLLSEN 115


>gi|254455208|ref|ZP_05068642.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198263492|gb|EDY87765.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 274

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           K  + + +  D+ P  ++  +Y  L        ++ A  F TP ++  L   L       
Sbjct: 76  KLMAHLVMALDSEPRDILGPLYMEL-----EIANKDAGQFFTPPELSELMANLTFGDMLG 130

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                P +  T  +P CG GG +   +  +   G        +     +++     +C  
Sbjct: 131 RLDSQPFI--TAGEPACGGGGMILALVKVMTRAGHDPARKLWVQAI--DVDRLAALMCYV 186

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +  + ++        I  G+TLS D
Sbjct: 187 QLSLWNVPAE--------IIVGNTLSWD 206


>gi|159898461|ref|YP_001544708.1| superfamily II DNA/RNA helicase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891500|gb|ABX04580.1| DNA or RNA helicase of superfamily II [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1024

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/474 (14%), Positives = 135/474 (28%), Gaps = 88/474 (18%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL------ESYIASF 107
             RE+        + L           + T+      L       N+      E  I   
Sbjct: 159 EFRERVPELAQGVLRLIEREISEKNQRFITALERFMALVREAINPNISVSAVEEMLIQHL 218

Query: 108 SDN--AKAIFEDFDFSS------TIARL---------EKAGLLYKICKNFSGIELHPDTV 150
                 + +F + DF +       I  +          +   L ++ + +  IE    T+
Sbjct: 219 LTERIFRKVFNNPDFVNRNVIAREIETVIQALTSRSFNRNDFLRELDRFYGAIESTAATI 278

Query: 151 PD-----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG- 204
            +       ++ +YE+  + F  +V++      TP+ +V      + +     F  S G 
Sbjct: 279 ENFSHKQDFLNTVYENFFQGFSIKVADTHGIVYTPQPIVDFMVRSVEELLRREFNTSLGN 338

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               + DP  GTG FL   M+ +       K       H  E+    + +    +     
Sbjct: 339 AGVHVLDPFVGTGNFLLRVMHEIPRSKLRQKYAEE--LHCNEVMLLPYYIASMNIEHLYY 396

Query: 265 ESDPRRDLSKNIQQGSTLSKDL--------------------FTGKRFHYCLSNPPFGKK 304
           E          I    T                            +     + NPP+  +
Sbjct: 397 ELTNSYQEFNGICLVDTFELAQVGAGQQLGLFVPENTERVLKQQQQDIFVIIGNPPYNAR 456

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA---IVLS 361
              + D  +         R    +    D          N L  P     R A   I+ +
Sbjct: 457 QVNENDNNKNRKYEIIDQR--VAMTYSRDSQ----QTNKNALNDPYVKSFRWAADRIIRN 510

Query: 362 SS----PLFNGRA---GSGESEIRRWLLEN-DLIEAIVALPTDL------------FFRT 401
                  L    +         +R+ L ++ D I  ++ L  ++             F  
Sbjct: 511 GDEGIVALVTNNSFIDDLSFDGMRKHLAQDFDAIY-VLDLGGNVRKNPKLSGTTHNVFGI 569

Query: 402 NIATYLWILSNRK--TEERRGKVQLINATDLWTSIRNEGKKRRIIND-DQRRQI 452
            +   +  L  ++  T+    K+    A ++W     + +K  ++N  +   +I
Sbjct: 570 QVGVSIIFLIKKRGSTKASDAKIWYARAGEMW----KKQEKFNLLNQAETIDKI 619


>gi|91204873|ref|YP_537228.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
 gi|91068417|gb|ABE04139.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii RML369-C]
          Length = 190

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 56/139 (40%), Gaps = 13/139 (9%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+  +   L+      G+  +V+             +  +R+ +L+N  I+AI++LP  
Sbjct: 6   LFMEWIVKALKP----NGKVFVVVPDGIFNRQN----DKNLRQLILDNCFIDAIISLPLK 57

Query: 397 LFFRTNIATYLWILSNRK--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            FF T   TY+  ++ +   ++ +   V     +++     +    R  I  D  ++ ++
Sbjct: 58  TFFTTPKKTYILAITKKHNISQIQTDPVFTYLCSEIGE---SRDIYRFDIEQDDLKEAVN 114

Query: 455 IYVSRENGKFSRMLDYRTF 473
           ++ + +  K          
Sbjct: 115 LFNAFKGSKKYFANINHDK 133


>gi|85372973|ref|YP_457035.1| type II restriction enzyme, methylase subunit [Erythrobacter
           litoralis HTCC2594]
 gi|84786056|gb|ABC62238.1| type II restriction enzyme, methylase subunit [Erythrobacter
           litoralis HTCC2594]
          Length = 854

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/455 (15%), Positives = 132/455 (29%), Gaps = 126/455 (27%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF------ 166
              + F    TI       +L  +   +         +P  ++  +YE  + +       
Sbjct: 184 ETLDTFTLDLTIDDKVLKPILKSLY--YPESPYEFSVLPADILGQVYERFLGKVIRLAGS 241

Query: 167 ------GSEVSEGAEDFMTPRDVVHLATALLLDPD-----------DALFKESPGMIRTL 209
                   EV +    + TP  +V       L              +    ++P  +R +
Sbjct: 242 RAIIEEKPEVKKAGGVYYTPAYIVDYIVKNTLGKLLEGKTPAQASGEDKRTKNPAPVR-V 300

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------------------------- 240
            DP CG+G FL  A  ++ D      +                                 
Sbjct: 301 IDPACGSGSFLIGAYQYLLDWYRDAYVSDDPAKYTSGKEPKLLEVGKDDWRLTIAERRRI 360

Query: 241 ---VPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTL 282
                 G +++ +   V    +L++ LE +                  DL +NI+ G++L
Sbjct: 361 LLTHIFGVDIDTQAVEVTKLSLLLKVLEGETADAMARQMDFFRIRALPDLGQNIRCGNSL 420

Query: 283 --------------SKDLF----------------TGKRFHYCLSNPPFGKKWEKDKDAV 312
                         S D                    K F   + NPP+     KD+   
Sbjct: 421 IGSDFYKTYSYSLFSDDDHIAMNVFDWEIEFPFLADTKGFDCVIGNPPYLFSAGKDQALY 480

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++       R+       S+    F ++   K        G  A ++  S L +     
Sbjct: 481 YQK-------RYQL-----SEYQTDFYVYFIEKGTHLLKPDGILAYIVPDSWLNSAN--- 525

Query: 373 GESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
             S +R  LL N+   A +++    +F   NI   ++   N K  ++   V+  + T+  
Sbjct: 526 -FSRVRHSLL-NEWSTAELSIFEYKVFRDANIENTVFFTRNAKPSKKLDIVRFTSPTEFE 583

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           T    +      +       I   Y  R     SR
Sbjct: 584 TMSTLDVADINRLG-----LINPRYDKRAERIISR 613


>gi|261820019|ref|YP_003258125.1| hypothetical protein Pecwa_0697 [Pectobacterium wasabiae WPP163]
 gi|261604032|gb|ACX86518.1| domain of unknown function DUF1738 [Pectobacterium wasabiae WPP163]
          Length = 653

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 18/173 (10%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            + I +  D+   I R + A    +    F+ +    +      + +++  L        
Sbjct: 465 VQEIED--DYMRRIKRYKTADQ-RRFPVLFNTLVDGMEFSAADFLGSVFMEL-----ELG 516

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    + TP  + ++   + L               T+ DP CG GG +      + + 
Sbjct: 517 DQRRGQYFTPYSIAYMMAKMQLSDGLPALTSGERDFITISDPACGAGGLVVAMAQAMLEA 576

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           G +      +V    +++P    +    + +  + +         +  G++LS
Sbjct: 577 GFN--PQKQMVAVCVDIDPVAAMMAYVQLALCGIPAM--------VIVGNSLS 619


>gi|282877469|ref|ZP_06286290.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
 gi|281300410|gb|EFA92758.1| Eco57I restriction endonuclease [Prevotella buccalis ATCC 35310]
          Length = 622

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/461 (11%), Positives = 140/461 (30%), Gaps = 55/461 (11%)

Query: 137 CKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
              F  I  +++ + V    +  ++E +I        E      TP  +    T  +L  
Sbjct: 57  LNKFQNILFDVYGEEVSIEKLIELFEFVI---SPAEKEVNGAVYTPIGIRQYITKGVLHN 113

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
               F+ +      + D +CG GGF    ++++    +           G ++  E +++
Sbjct: 114 ----FEVARWSELQIADISCGCGGFFISLVDYIRSQINIEYSELYRNFFGVDI--EQYSI 167

Query: 255 CVAGMLIRR---LESDPRRDLSKNIQQGSTLSKDLF------TGKRFHYCLSNPPFGKKW 305
               +L+        +  ++ + N+ + ++L+ D            F   + NPP+    
Sbjct: 168 DRTKILLSLYAIQNGEDIQEFNFNLYRANSLAFDWNTIGVFRQNNGFDIVIGNPPYVGSS 227

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSS 363
           +     +    K          + +     +   F       +      G     V +  
Sbjct: 228 K-----IADSSKKLLDN---WIVTRSGKADLYIPFFQIAIECINPNGIVGYI--TVNNFY 277

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRK-------- 414
              NGRA       R ++ EN     ++      +F   +  T +  ++  +        
Sbjct: 278 RSLNGRA------FRTYMSENRYDLKMIDFGAEQVFKGRSTYTCICFITRNQRSIKYTKS 331

Query: 415 TEERRGKVQLINATDL-WTSIRNEGKK--RRIINDDQRRQILDI---YVSRENGKFSRML 468
           + +    ++  +  +L +  + +      ++ +     ++I           + K     
Sbjct: 332 SPKELDNIKETDYIELAYDDLSDSKGWLLQKPLIGSNIKKIESTGLPLGKCFDIKNGFAT 391

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                    I          +     + ++E +I    + P       +I+    + +  
Sbjct: 392 LKNDVFVLNIVREDQSYYYTLASDGNIYQIEKEICRDAIKPNILKSETEIVDKTEKLL-- 449

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDP 569
           + +     K    + +        +  +++ F +    +D 
Sbjct: 450 FPYTNINGKICPMTEKDFHTDYPFAYKYLLNFKDVLSTRDK 490


>gi|255535170|ref|YP_003095541.1| adenine specific DNA methyltransferase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341366|gb|ACU07479.1| adenine specific DNA methyltransferase [Flavobacteriaceae bacterium
           3519-10]
          Length = 1063

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/480 (14%), Positives = 139/480 (28%), Gaps = 122/480 (25%)

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           A   ++  LE+F ++   +    S   L  L       +L+  +    +    IF   D 
Sbjct: 223 AARYNDPTLETFSRLEAANLIPKSNPFLRKLFQDIAGFDLDDRLVWIVEELVQIFLATDV 282

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
              +    KA  +     +F                  YE  + ++   + +    + TP
Sbjct: 283 EKIMKNFGKATKMEDPIIHF------------------YETFLAQYDKNLRKVRGVWYTP 324

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRT-------------------------------L 209
           + +V+     + D     F    G+  T                               +
Sbjct: 325 QPIVNFIVRAVDDILKDEFNLQQGLADTSKTKIKVDSQIPDARSATGFRLVEKEVHRVQI 384

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEPETHAVC--VAGM 259
            DP  GTG FL + + H+       +           I   +G EL   ++A+      M
Sbjct: 385 LDPATGTGTFLAETVKHIHSKFKGMEGMWSKYVKNDLIPRLNGFELLMASYAMAHLKMDM 444

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTG----------------------KRFHYCLS 297
           L++        +    I   ++L ++                                + 
Sbjct: 445 LLKETGYKSDDEQRFRIFLTNSL-EEAHPDSGTLFSSWLSDESTQANKIKKETPVMVVMG 503

Query: 298 NPPFGKKWEKDKDAVEKEHKN-----GELGRFGPGLPKISDGSML----FLMHLANKLEL 348
           NPP+  +       +    ++     G   +     PK  +   +    F  +  NK   
Sbjct: 504 NPPYSGESANKGKWIMDLMEDYKKEPGGKEKLKERNPKWINDDYVKFIRFAQYFINK--- 560

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI----------V----AL 393
             NG G  A +     L N         +R  LL+  D I  I          +    ++
Sbjct: 561 --NGTGILAFINPHGFLDNPTFRG----MRWNLLKEFDKIYTIDLHGNLKKKEISPDGSI 614

Query: 394 PTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
             ++F     ++  L++ +  K E   G+V        +        K + +N++    I
Sbjct: 615 DQNVFDIMQGVSVNLFVKTGNKKENELGQVL------HYDLFGKRDFKYQFLNENNISTI 668


>gi|163867444|ref|YP_001608643.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017090|emb|CAK00648.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1654

 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/426 (14%), Positives = 117/426 (27%), Gaps = 52/426 (12%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A  ++      S I  E  +++ G        +     G+   +NN      + S   +
Sbjct: 770  DAFHKELKNNLNSEIKQEEALEMLGQHLVTRPVFEALFDGNEFVQNN------AISQAME 823

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             I  + D ++     ++    Y   K  +     P    + ++  +YE    +   + ++
Sbjct: 824  KILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFTKAFKKTTD 882

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +VV      + D     F +S G    ++ DP  GTG F+T  +       
Sbjct: 883  RLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRLLQSNLIKP 942

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTLSK------ 284
               +       H  E+    + +    +               K+I    T         
Sbjct: 943  EDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTFRMLEEKNL 1002

Query: 285  ------------DLFTGKRFHYCLSNPP--FGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                        +            NPP  FG+K   D +            R       
Sbjct: 1003 LQELFKENSEYLEHQKKLDIKVIFGNPPYSFGQKSANDNNPNTSYFILDNRIRKKYISNS 1062

Query: 331  IS----DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                  +      +             G    V ++  + +G A  G   +R+ L+E   
Sbjct: 1063 TKIINRNKLYDSYIRAICWASDRIKERGVIGFVTNAGFI-SGHAMDG---LRKCLVEEFS 1118

Query: 387  IEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLW 431
               I  L  +              +F   +     + IL      ++ GK+   +  D  
Sbjct: 1119 SLYIFHLRGNQRTSGELSRKEGGKIFGEGSRAPIAISILVKNPNAQQHGKIYFRDIGDYL 1178

Query: 432  TSIRNE 437
                  
Sbjct: 1179 NREEKL 1184


>gi|313884106|ref|ZP_07817872.1| hypothetical protein HMPREF9257_1056 [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620553|gb|EFR31976.1| hypothetical protein HMPREF9257_1056 [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 80

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            K P  +  HGQEL   T+ +    +++  + ++  R  +       TL+KD  + + + 
Sbjct: 1   MKYPNSVHYHGQELNTTTYNLAKMNLILHSVPTEYMRLSNA-----DTLNKDWPSDEPYT 55

Query: 294 Y--CLSNPPFGKKWEKDKDAVEK 314
           +   L NPP+  KW  D   ++ 
Sbjct: 56  FDAVLMNPPYSAKWSADSTFLDD 78


>gi|110634699|ref|YP_674907.1| N-6 DNA methylase [Mesorhizobium sp. BNC1]
 gi|110285683|gb|ABG63742.1| N-6 DNA methylase [Chelativorans sp. BNC1]
          Length = 1038

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 117/428 (27%), Gaps = 83/428 (19%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR---VMS 156
                  F+     +F D D  +   ++    +  +I  +F                   
Sbjct: 239 FRQLGNDFNG---DLFSD-DLDAECRKITNKHI--EILDDFFSGTDMRHGQRAFWPYDFG 292

Query: 157 NI--------YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            I        YEH ++    +  +    F TPR        ++L  D AL    P + + 
Sbjct: 293 YIPIETISAIYEHFLK----DEDQRDGAFYTPR----FLAEVVL--DSALEDVGPLLGKK 342

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------------VPHGQELEPETHAVC 255
             DP CG+G FL      +A+                           G +  P    + 
Sbjct: 343 FLDPACGSGIFLVGLFIRMAEEWKQANPKARYGRRARELMQVLRDSLFGVDKNPIACRIA 402

Query: 256 VAGMLIRRLE--------------------------SDPRRDLSKNIQQGSTLSKDLFTG 289
              + +  L+                                 S+NI +     K     
Sbjct: 403 AFSLYLAYLDQLTPSDIQQLQKKGRALPLLTWDHAAPSTDEASSRNIHRVDFFQKGAPLP 462

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
           +     L NPP+G        A     ++ +          + D  +   +    K    
Sbjct: 463 QDADLVLGNPPWGSIAGDGTPAGIWCAESKK---------PLPDKQIA--VAFIWKAAEH 511

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATY 406
            +  G+   +L    L N    + E + R W +    +  ++ L      LF        
Sbjct: 512 ASQTGKVCFLLPHGVLVNHGPVAVEFQ-RAW-VRQHTLRRVLNLADLRHFLFRDAIHPAI 569

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +   +  + + R G++Q       W   R E      I D +   +  ++         +
Sbjct: 570 VVEYAQGEPDLRAGRIQYWAPKADWMIARAEIINVSPI-DRKIITVAGLFDDLNKPDAPQ 628

Query: 467 MLDYRTFG 474
           +     +G
Sbjct: 629 IWVRDYWG 636


>gi|256956669|ref|ZP_05560840.1| predicted protein [Enterococcus faecalis DS5]
 gi|300860462|ref|ZP_07106549.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|256947165|gb|EEU63797.1| predicted protein [Enterococcus faecalis DS5]
 gi|300849501|gb|EFK77251.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|315035632|gb|EFT47564.1| hypothetical protein HMPREF9501_01554 [Enterococcus faecalis
           TX0027]
          Length = 494

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 100/295 (33%), Gaps = 38/295 (12%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVADC 230
           +    F T + + +   +L         K       TL +P  G G  L+     +  + 
Sbjct: 9   KENGIFYTDKKLANKMVSL--------LKIDYKSEFTLIEPAVGEGHILSLIVKKYFIEN 60

Query: 231 GSHHKIPP----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
              +K            G ++  E  AVCV+ +     E   R+    NIQ+   L++  
Sbjct: 61  KDKNKDEQAEFLENNIAGFDIRDEAIAVCVSKLNDLSEEYIQRKIEW-NIQKFDALNRKE 119

Query: 287 FTGK--RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              K   + Y +SNPP+  +   D+  +    +  E           S  +     +   
Sbjct: 120 LIEKFGTYDYVISNPPYVSRHNMDERTITALREKSEF---------CSKFNFDLYYYFFE 170

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNI 403
                 N  G+   +  +S +   +A SGE  +R +L++N L+E I+    ++ F     
Sbjct: 171 IGFDLWNRSGKIVYITPNSYI---KARSGEVMMR-YLIDNSLVETIIDYKDEMKFEGATT 226

Query: 404 ATYLWILSN-RKTEERRG-------KVQLINATDLWTSIRNEGKKRRIINDDQRR 450
            T + + S   K    +        KV   +  + +  +           ++   
Sbjct: 227 YTAISVFSTGNKVLRVKNNKGINLVKVTYRDLMEKYNYMIYSHDFLTEFQEEFID 281


>gi|210630625|ref|ZP_03296528.1| hypothetical protein COLSTE_00413 [Collinsella stercoris DSM 13279]
 gi|210160400|gb|EEA91371.1| hypothetical protein COLSTE_00413 [Collinsella stercoris DSM 13279]
          Length = 532

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 33/268 (12%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             S+    F+TP+ V       ++   D         +  + DP CG G  +   +  +A
Sbjct: 26  NRSKAIGQFLTPKQVYDAMIGDIMQNFDLRQDS----VINVIDPFCGDGRLIAAFLTVLA 81

Query: 229 DCGSHHKIPPI--LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
              +H K   +         +   T  +C A        +D   ++  N Q       D 
Sbjct: 82  TANNHPKEVVVTAWDIDEAIINAATETICEA-------ATDAPFEVVVNTQVMDAFDCDQ 134

Query: 287 FTGKRFHYCLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPG------LPKIS------ 332
                F  C++NPP+   K  + +  A + E++  +      G       P++       
Sbjct: 135 ALYGSFDICVTNPPWSSTKSLKANAFATKDEYEAYQTLTNAYGRLLTERYPEVKGGKSFG 194

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
            G++                 G   IV+ SS      A +  + +RR +L++  + ++  
Sbjct: 195 AGALNLSRFGLALALRLVKESGICGIVMPSSL----AADTSSAVLRRSMLDHFSLRSLHY 250

Query: 393 LPT--DLFFRTNIATYLWILSNRKTEER 418
            P    LF   + A    +L   + ++ 
Sbjct: 251 YPAELKLFAGADQAAIYLVLDANRNDKP 278


>gi|168187409|ref|ZP_02622044.1| DNA modification methyltransferase [Clostridium botulinum C str.
           Eklund]
 gi|169294713|gb|EDS76846.1| DNA modification methyltransferase [Clostridium botulinum C str.
           Eklund]
          Length = 590

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 91/329 (27%), Gaps = 65/329 (19%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRV---------MSNIYEHLIRRFGSEVSEGAEDF 177
           L K   LY I             + +            S IY +L      +  +     
Sbjct: 6   LNKVNELYNIINAPIDKIFKTMAIENYKKVLNLGKEKFSEIYINL---KEKDKKKEKGVV 62

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234
            TP+++       ++  +             + DP+CG G  L      +      +   
Sbjct: 63  YTPKEIAAYMLENVVTKEH----IISNPYIKILDPSCGCGDILIVCYEKLKKIYIKNLQY 118

Query: 235 ---------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                          K       +G +++     +    +             +KN++  
Sbjct: 119 INEVNNTKLKEEDIPKHIIENNLYGFDIDEVAIKILAIDLF-----QVSGYFCNKNLKCM 173

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             L        +F   L NPP+          V+KE+       F        D S  F 
Sbjct: 174 DFLLDKC--DSKFDIILGNPPY-----VGHKCVDKEYSKKLKSSFKEIYKDKGDISYCFF 226

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
               N L          +     SP       SGE E+R+ L +   +  IV      F+
Sbjct: 227 QQAINNLIREGKLSFITSRYFMESP-------SGE-ELRKVLKDVCSLYTIVD-----FY 273

Query: 400 ------RTNIATYLWILSNRKTEERRGKV 422
                  T +   +  L N++  +   KV
Sbjct: 274 GIRPFKNTGVDPVIIFLINKQDAKEEIKV 302


>gi|170717580|ref|YP_001784665.1| type I restriction-modification system methyltransferase
          subunit-like protein [Haemophilus somnus 2336]
 gi|168825709|gb|ACA31080.1| Type I restriction-modification system methyltransferase
          subunit-like protein [Haemophilus somnus 2336]
          Length = 122

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 18/53 (33%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS 53
          M       + L   IW+ A ++ G     DF + +L     R +    E    
Sbjct: 1  MIISIQQRSELHRQIWQIANEVRGAVDGWDFKQYVLGTLFYRFISEKFEKYND 53


>gi|254167636|ref|ZP_04874487.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
 gi|289597007|ref|YP_003483703.1| protein of unknown function DUF450 [Aciduliprofundum boonei T469]
 gi|197623445|gb|EDY36009.1| Type I restriction enzyme R protein N terminal domain protein
           [Aciduliprofundum boonei T469]
 gi|289534794|gb|ADD09141.1| protein of unknown function DUF450 [Aciduliprofundum boonei T469]
          Length = 995

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 63/477 (13%), Positives = 125/477 (26%), Gaps = 136/477 (28%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         + E       + +      + A    YN+  +         T  
Sbjct: 236 IFLRMCEDRGVERYGRLLEAAEEDVYAALL--KLYQEADEK-YNSGLFHFKPEKGRATEP 292

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMS 156
           +              I  +            + +L +I K   +         +   ++ 
Sbjct: 293 D-------------DITPNIKI--------DSKVLKRIIKGLYYPESPYEFSVISPEILG 331

Query: 157 NIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +YE  + +                EV +    + TP+ +V+      +           
Sbjct: 332 QVYEQFLGKVIRLTKGHRAKVEEKPEVKKAGGVYYTPQYIVNYIVENTVGKLCKGKTPKE 391

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCG-----------------------------SHH 234
                + D  CG+G FL  A   + +                                  
Sbjct: 392 MEKIKILDSACGSGSFLLGAYTRLLEEHLRYYTSAKNKKRYRDRIYQDKNGEWHLTIREK 451

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQG 279
           K   +   +G +++ +   V    +L++ LE + +                DL  NI+ G
Sbjct: 452 KRILLNSIYGVDIDEQAVEVTKLSLLLKVLEGENKDALERQQKLWRERALPDLGNNIKCG 511

Query: 280 STL--------------------------SKDLFT----GKRFHYCLSNPPF-GKKWEKD 308
           ++L                           +  F        F   + NPP+  ++    
Sbjct: 512 NSLVGTDYYASGVQMTLFDEERERINAFDWEKEFPEVMKNGGFDVIIGNPPYVRQEMLGK 571

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                KEH     G         +D  + F+      L+     G   A           
Sbjct: 572 LKNYFKEHYEVYHG--------TADLYVYFIERSMKLLKPNGIYGIIVA--------NKW 615

Query: 369 RAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
              +    +R WL +  ++E I+    LP  +F +      + I+   K  +    V
Sbjct: 616 MRANYGKPLREWLKKWQIVE-ILDFGDLP--VFKKATTYPCIMIVKASKPRKYFWAV 669


>gi|118497108|ref|YP_898158.1| hypothetical protein FTN_0509 [Francisella tularensis subsp.
           novicida U112]
 gi|194323405|ref|ZP_03057182.1| adenine specific DNA methyltransferase [Francisella tularensis
           subsp. novicida FTE]
 gi|118423014|gb|ABK89404.1| conserved protein of unknown function [Francisella novicida U112]
 gi|194322260|gb|EDX19741.1| adenine specific DNA methyltransferase [Francisella tularensis
           subsp. novicida FTE]
          Length = 1130

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 78/589 (13%), Positives = 169/589 (28%), Gaps = 132/589 (22%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
               V + +     +              F       L  L       N++  I    DN
Sbjct: 225 YHDEVLDTFSRQEAAE------KIPKSNPF-------LRRLFDYVAGTNIDDRIKHTVDN 271

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +F   D    +++  ++        +F                  YE  +  + S++
Sbjct: 272 LADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDSKL 313

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------------------- 208
            +    + TP+ VV      + +   + F  S G+  T                      
Sbjct: 314 RKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRSKSGYKQ 373

Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQELEPE 250
                    + DP  GTG FL +A+  + +              +   I   +G EL   
Sbjct: 374 IEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELLMA 433

Query: 251 THAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------------------SKD 285
           ++A+      ML+     +    +    +I   ++L                     +  
Sbjct: 434 SYAMAHLKLDMLLTDTGYKPKSSQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEANQ 493

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---SDGSMLFLMHL 342
           +         + NPP+        + +    ++ +         +    +D  + F+ + 
Sbjct: 494 IKKDTPVMVVMGNPPYSGISSNTGEWITSLIEDYKYVDGVHFNERKHWLNDDYVKFMRYG 553

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
              +E   NG G  A +     L N         +R  LL+  D I   + L  +     
Sbjct: 554 QYYIEK--NGSGVLAFINPHGFLDNPTFRG----MRYSLLKTYDKIYT-IDLHGN----- 601

Query: 402 NIATYLWILSNRKTEERRG----KVQ-LINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
                    S +K     G     V  ++    +   ++   KK   + +       D+Y
Sbjct: 602 ---------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNNELAEVYH---YDLY 649

Query: 457 VSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             R +  +F       + G+++++  +P       D +  A  E   +   L P + +  
Sbjct: 650 GKRNDKYEFLSQNSLSSIGFKKVEYSKPYYFFIPKDDSQRASYEKGFSVVSLFPENVTGI 709

Query: 516 LDILK--PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           + +     + +             +  K+ +    K K  K++    + 
Sbjct: 710 VTMGDSFAIAETKQQLKDRLEDFLQIEKTEDNLKQKYKLGKNYAKWILE 758


>gi|62259857|gb|AAX77871.1| unknown protein [synthetic construct]
          Length = 360

 Score = 59.6 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 97/331 (29%), Gaps = 58/331 (17%)

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFG 302
             +   E   V    M++         D    I     L   +     RF   L+NPPFG
Sbjct: 20  DDKHMLEMARVSKMNMIMHG-------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFG 72

Query: 303 KKWEKDKDAVEKEHKN----------------------------GELGRFGPGLPKIS-D 333
               KD   V +E K                             G+  R      +IS  
Sbjct: 73  TNLGKDNSKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISVA 132

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
             +LF+    + L+     GGR  IVL    L +        + R +      I  IV+L
Sbjct: 133 TEVLFVERCLDLLK----AGGRMGIVLPEGVLNSSNLQ----KAREYFESRAKILLIVSL 184

Query: 394 PTDLFFRTN--IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           P DLF  +   + T L  L              +   + + +++ + +K        +  
Sbjct: 185 PQDLFVSSGATVKTSLVFLKK----------FTVEEQEQYETVKTQAEKEAEQKYQPQLL 234

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            +   +  E      +   R     +        +   LD+T +   E     ++     
Sbjct: 235 EIQQKIDFEKSIKQHITKLRKALKTK-TAKNKENLQLTLDETIVEHTEYKKKVKQYKAQL 293

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
           +       +   Q I      E  + E  K+
Sbjct: 294 KELEAKQQEEAKQLIKQKFDYEIPIAEIEKA 324


>gi|308064129|gb|ADO06016.1| adenine specific DNA methyltransferase [Helicobacter pylori Sat464]
          Length = 1203

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NQNIKLLDFATGTGTFLLEAFRKALEMMKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   NP F  +    ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIVAYRGLNPIFETELLNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495


>gi|126659143|ref|ZP_01730282.1| type I restriction-modification system, M subunit, putative
           [Cyanothece sp. CCY0110]
 gi|126619550|gb|EAZ90280.1| type I restriction-modification system, M subunit, putative
           [Cyanothece sp. CCY0110]
          Length = 1033

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 101/312 (32%), Gaps = 60/312 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S++YE  + +      EG     TP  +V      +L  DD  +         + DP C
Sbjct: 329 ISSVYEEFVSK-----KEGQGVHYTPEFIVDFILDGVLPWDDEEWDLK------ILDPAC 377

Query: 215 GTGGFLTDAMNHV-----ADCGSHH-----KIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           G+G FL  A   +          +      K        G +++ E   V      +  L
Sbjct: 378 GSGIFLVKAYQRLIYRWEKAHNKNITSDILKSLLENNFLGVDIDREAIRVASFSFYLMML 437

Query: 265 ESDPRRDLSKNIQQGSTLSK------DLFTGK-----------RFHYCLSNPPFGKK--W 305
           ++   R+  +N  +  TL        D F               +   L N P+GK    
Sbjct: 438 DNIDPRNYWENEVKFPTLRNKKLIAADFFAEDIEGFRTEEDSGTYDLVLGNAPWGKNSIT 497

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
           +K K+  +K + N            IS G++       +K        G  +++  +  L
Sbjct: 498 KKAKEWTKKYNWNDC----------ISYGNIAP--FFLSKAVKLTKDNGYISMMQPAGTL 545

Query: 366 -FNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSNRKTEERRGK 421
            FN    +   ++R  L     +  IV L      LF      T +  L N         
Sbjct: 546 IFNQGDKN--QQLRFKLFSETKVSEIVDLSALRFGLFKNAISPTCIITLEN--IASNNDS 601

Query: 422 VQLINATDLWTS 433
           V  +    L+ +
Sbjct: 602 VLYLCPKILYKN 613


>gi|307638127|gb|ADN80577.1| type II S restriction enzyme M protein [Helicobacter pylori 908]
          Length = 599

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/449 (15%), Positives = 139/449 (30%), Gaps = 113/449 (25%)

Query: 40  LLRRLECA------LEPTRSAVREKYLA----FGGSNIDLESFVKVAGYSFY-----NTS 84
            ++R++        LE  R    ++             D E          Y       +
Sbjct: 186 FIKRVDTLSLSDEDLERIREKKNQEIEDCLTRLNNDIYDKEKNFLSEHNRVYLVIASIIA 245

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG------LLYKICK 138
              +S L +   + +L+S   +   +   I            L +        LL  + +
Sbjct: 246 NLGISNLVAPLNKEDLKSSDENGERDGDKILRKIRSFLKHKHLSEEKERSIISLLEPLLR 305

Query: 139 N----------------FSGIE-----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           N                FS I       +   +       ++  + R  G    +  +  
Sbjct: 306 NENNNKAINGESRLKRCFSEIVDSLGVYYKIGLSTDFTGKLFNEMYRWLGFTQDKLNDVV 365

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV---------- 227
           +TP     L   L     D+           ++D   G  G L  +MN +          
Sbjct: 366 LTPPYAATLLARLSKVNKDSF----------VWDFATGNAGLLVASMNLMIEDAKKRITS 415

Query: 228 -ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KD 285
             +              G E+ P+ H + V  M++         D S  I   ++LS  D
Sbjct: 416 PEELEQKIAHIKAKQLLGIEILPDIHILAVLNMILMG-------DGSSQILNQNSLSGFD 468

Query: 286 LFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                +    +  + NPP+                                  M+F+   
Sbjct: 469 GKVNDKEFKANAFVLNPPYSASGNG----------------------------MVFVEQA 500

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-T 401
             K++      G A++++ SS    G   + E  +R  +LE   + A + +P DLF   +
Sbjct: 501 LAKMQS-----GYASVIIQSSA---GSGKAKEYNVR--ILEKHTLLASIKMPLDLFIGKS 550

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDL 430
           ++ T++++    +  + + +V+ IN ++L
Sbjct: 551 SVQTHIYVFRVNEKHDAKQRVKFINFSNL 579


>gi|254489560|ref|ZP_05102762.1| restriction methylase [Roseobacter sp. GAI101]
 gi|214041730|gb|EEB82371.1| restriction methylase [Roseobacter sp. GAI101]
          Length = 575

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 73/242 (30%), Gaps = 33/242 (13%)

Query: 133 LYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L  +   F   I           +  +Y  L+ +    ++     F +P  +  +  AL 
Sbjct: 87  LSDLAAQFGEVIANCNAQFAAYEVGMLYTSLLPKSAKSLN---GIFYSPPAISGMLLALA 143

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPILVPHGQE 246
            D      +          +P+CG G  LT     +         S           G E
Sbjct: 144 NDAKADWTRH------LFLEPSCGGGVILTAIAERMIDAIKRQPSSEILAHLSKNLVGYE 197

Query: 247 LEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++P    +       L     +D        ++   TL+ +    ++F + + NPPFG+ 
Sbjct: 198 IDPFGAWLAQVSIDFLALPFCTDEDSRFPVIVRCTDTLAVN--DNEQFDFVIGNPPFGRT 255

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+     E        FG         ++  L    ++       GG    V  +S 
Sbjct: 256 KLTDEQRRHFERST-----FGH-------ANLYAL--FWDQALRLVRLGGTIVFVTPTSF 301

Query: 365 LF 366
           L 
Sbjct: 302 LS 303


>gi|319941355|ref|ZP_08015684.1| DNA helicase restriction enzyme Type III R subunit [Sutterella
            wadsworthensis 3_1_45B]
 gi|319805116|gb|EFW01943.1| DNA helicase restriction enzyme Type III R subunit [Sutterella
            wadsworthensis 3_1_45B]
          Length = 1661

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/570 (12%), Positives = 161/570 (28%), Gaps = 74/570 (12%)

Query: 41   LRRLECAL-EPTRSAVREKYLAFGGS-------NIDLESFVKVAGYSFYN----TSEYSL 88
            ++ +   L +PT++  RE + +F          ++  +  V++ G          + +++
Sbjct: 764  IKHINDVLKDPTKTKSREAFESFKKELKATLNDSLTDDEIVEMLGQHVVTQPILDALFTI 823

Query: 89   STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             T   T+   + ++ IA    +     +          LE     Y+  +N     +   
Sbjct: 824  QTSEGTSYEFSKQNPIAIAMTSMMDSLDKESMRLATKSLED---FYRSVRN-RTRTIKTS 879

Query: 149  TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK-ESPGMIR 207
                 ++  ++E   +    +  E      TP ++V      + D     F         
Sbjct: 880  ADRQLLIKELFEKFFKAAFPKQQEKLGIVYTPIEIVDFINQSVADLLKKEFNCSIADDGI 939

Query: 208  TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLE 265
             + DP  GTG F+   M                  H  E+ P  + V    +  +   L 
Sbjct: 940  HILDPFSGTGTFIARLMQSGLIPTDRLPNKFEHELHANEIVPLAYYVASMNIEGVFHELC 999

Query: 266  SDPRRDLSKNIQQGSTLSKDLFTG------------------KRFHYCLSNPPFGKKWEK 307
             +     ++ +    T + +  +                   +     + NPP+    + 
Sbjct: 1000 PNEVYQPNRVMIWTDTFANNRQSSIFSTTLGENNARLVELNRQDIRVIIGNPPYSVGQDN 1059

Query: 308  DKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFLMHLANKLELPPNGG--GRAAIVLSS 362
              D  + EH +    R        +   + + L+  ++          G  G    V ++
Sbjct: 1060 ANDDNQNEHYDELDDRIAKTYAAKTEAVNKNSLYDSYIRAYRWASDRIGNKGIIGFVTNA 1119

Query: 363  SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYL 407
              + +  A      +R+ L E      +  L  +              +F   +     +
Sbjct: 1120 GWIDSNSADG----MRKCLTEEFSSIYVYHLKGNQRTSGERSRQEGGKVFGEGSRAPVAI 1175

Query: 408  WILSNRKTEERRGKVQLINATDLWTSIRNEGKKR--RIINDDQRRQIL-DIYVSR---EN 461
              L        RGK+   +  D  T        R  R +   Q   I+ D +       +
Sbjct: 1176 VFLVKNPASTERGKIFFHSVDDYLTREEKLACLREDRSMAYTQTNVIVPDAHGDWLNQRD 1235

Query: 462  GKFSRMLDYRTFGYRRIKVL-------RPLRMSFILDKTGLARLEADITWRKLSPLHQSF 514
              +++ +       +   +        +  R S++ + +     E   T           
Sbjct: 1236 DSYAKFMRVDGKKTKESSIFLNYSNGIKSGRDSWVYNSSRNRLCENIKTSINYFNACVDN 1295

Query: 515  WLDILKPMMQQIYPYGWAESFVKESIKSNE 544
             L     +  +               +  E
Sbjct: 1296 LLSNKDYLPIKDDAKIKWNETQDTLFQKKE 1325


>gi|108563726|ref|YP_628042.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
 gi|107837499|gb|ABF85368.1| adenine specific DNA methyltransferase [Helicobacter pylori HPAG1]
          Length = 1201

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 174 RYLKDALIAYQQDDQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 231

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +E+   LL +I  + + +++          
Sbjct: 232 KINLDNVRSSIPKNFAVIREMADFLKKLDEIEEIQWLLNEILSSINHVDMDSILKDLNDD 291

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 292 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 351

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL  A     +                   +   +G E     +A
Sbjct: 352 NENIKLLDFATGTGTFLLKAFRKALEMRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 411

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   +P F K+ +  ++
Sbjct: 412 IAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP---SEIVAYRGLSPIFEKELKSAQE 468

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E      G         ++G   +
Sbjct: 469 IKKDEKILIITGNPPYSGASSNEGLFEW 496


>gi|290474589|ref|YP_003467469.1| hypothetical protein XBJ1_1563 [Xenorhabdus bovienii SS-2004]
 gi|289173902|emb|CBJ80689.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 228

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 18/172 (10%)

Query: 122 STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
            TI + E+A +  +I + FS + L     P   + +++  L         +  + F TP 
Sbjct: 55  KTINKYERADV-DRIVQLFSHVVLGLVQEPGDFLGSVFMQL-----ELGDKDLQQFFTPW 108

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            V  +   + L     L +  P    TL +P  G G     A + + + G        L 
Sbjct: 109 SVARMMAQMQLQDAAGLLQTQP--FVTLCEPCVGAGCITLAAADVLRELGHD--PLCSLW 164

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
            +  +++P    +      +  + +         I  G+ L        R+ 
Sbjct: 165 VYAIDIDPLAAVMAYIQFSLTGIPAA--------ITIGNALHDGGDKRTRYT 208


>gi|163868211|ref|YP_001609419.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017866|emb|CAK01424.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1647

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/442 (14%), Positives = 129/442 (29%), Gaps = 59/442 (13%)

Query: 44   LECALEPTR-------SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
            L+  L   +        A  ++  +    +I  E  +++ G        +     G+   
Sbjct: 760  LKDILSDEKGKARCAFEAFHKELKSNLNDSITQEEALEMLGQHLVTRPVFEALFEGNEFV 819

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +NN      S S   + I  + D +       +    Y   K  +     P    + ++ 
Sbjct: 820  QNN------SISQAMERILAELDKTDIKQESLELQGFYNSVKFRASGITEPQARQNLII- 872

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCG 215
             +YE    +   + ++      TP +VV      + D     F +S G    ++ DP  G
Sbjct: 873  KLYEDFFSKAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTG 932

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSK 274
            TG F+T  +          +       H  E+    + +    +               K
Sbjct: 933  TGTFITRLLQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSIMKGEYIPFK 992

Query: 275  NIQQGSTLSK------------------DLFTGKRFHYCLSNPP--FGKKWEKDKDAVEK 314
            +I    T                     +            NPP  FG++ E D +    
Sbjct: 993  HIGLTDTFRMLEEKNLLQKLFKENSEYLEHQKKLNIQVIFGNPPYSFGQRSENDNNPNTS 1052

Query: 315  EHKNGELGRFGPGLPKIS--DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 E  R    L      + + L+  ++          +  G    V ++S + NG +
Sbjct: 1053 YPILDERIREKYILKSTKIINRNKLYDSYIRAIRWASDRIDNAGVIGFVTNASFI-NGSS 1111

Query: 371  GSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKT 415
              G   +R+ L+E      I  L  +              +F   +     + IL     
Sbjct: 1112 MDG---LRKCLVEEFSSLYIFHLRGNQRTSGEISRKEGGKIFGEGSRAPIAISILVKNPN 1168

Query: 416  EERRGKVQLINATDLWTSIRNE 437
             ++ GK+   +  D        
Sbjct: 1169 AQQHGKIYFRDIGDYLNREEKL 1190


>gi|124004980|ref|ZP_01689823.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
 gi|123989658|gb|EAY29204.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
          Length = 503

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 82/255 (32%), Gaps = 25/255 (9%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           ++++          D+ TP  ++      +      +      + + + DP CG G FL 
Sbjct: 1   MLKKSADIQG--YIDYSTPSFIIEKILDDIDFGQQKVI-----LGKKILDPACGAGRFLI 53

Query: 222 DAMNHVADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +A   V         +  +   +G +++      C+  M    ++    +   K I +  
Sbjct: 54  EAAKRVIAISPKEDIVNNLEQLYGWDIDGAAIEECIENMN-HLIKPLNIQVNWK-IYELD 111

Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +L       + RF + + NPP+ +    D+   +    +    + G      +D  M F 
Sbjct: 112 SLHYIEHPEEVRFDFIVGNPPYIRIQHLDETQRKYIQTHYSFCKNG-----STDIYMAFF 166

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLF 398
                 L       G   ++  ++  +   A      +R        I  I       +F
Sbjct: 167 ELCHKLLTPT----GVCGLITPNTYFYTQTAQ----AMRDAFAHLKNIRQITNYGKIQVF 218

Query: 399 FRTNIATYLWILSNR 413
                 + + I + +
Sbjct: 219 QNATTYSAITIFTKK 233


>gi|301019050|ref|ZP_07183262.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
 gi|299882408|gb|EFI90619.1| N-6 DNA Methylase [Escherichia coli MS 196-1]
          Length = 402

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 292 FHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F   + NPPF   +W  D   +  E    +       +P      ++F+  +   L+   
Sbjct: 102 FDVAVCNPPFTLPEWRDDYFKIISEIGADKYISVSKYVP----AEIIFISQVIRFLKK-- 155

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG A I+L    +F  R   G   +RR+LL    I  ++ LP ++F RT   T++ I 
Sbjct: 156 --GGEAGIILPDG-IFTARKFIG---LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 209

Query: 411 SNRKTEERRGKVQL 424
           + +       K+QL
Sbjct: 210 NKKIMPHH--KIQL 221


>gi|157159784|ref|YP_001457102.1| DNA methylase family protein [Escherichia coli HS]
 gi|157065464|gb|ABV04719.1| putative DNA Methylase family [Escherichia coli HS]
          Length = 402

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 292 FHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F   + NPPF   +W  D   +  E    +       +P      ++F+  +   L+   
Sbjct: 102 FDVAVCNPPFTLPEWRDDYFKIISEIGADKYISVSKYVP----AEIIFISQVIRFLKK-- 155

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG A I+L    +F  R   G   +RR+LL    I  ++ LP ++F RT   T++ I 
Sbjct: 156 --GGEAGIILPDG-IFTARKFIG---LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 209

Query: 411 SNRKTEERRGKVQL 424
           + +       K+QL
Sbjct: 210 NKKIMPHH--KIQL 221


>gi|120553351|ref|YP_957702.1| restriction modification system DNA specificity subunit
           [Marinobacter aquaeolei VT8]
 gi|120323200|gb|ABM17515.1| restriction modification system DNA specificity domain
           [Marinobacter aquaeolei VT8]
          Length = 588

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 65/202 (32%), Gaps = 33/202 (16%)

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L +      R  + ++   LF+  + S    IR  L+ N+ ++A+V LP      T 
Sbjct: 253 LAVLRVARECTSRGVVCVAPGVLFSRASMS----IREELINNNWLDAVVGLPKGTLTNTA 308

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           +   L ++   + ++    +  + A++            R + ++    +      R + 
Sbjct: 309 VPPVLLVIDKHREKDSP--IAFVEASE------------RQLAEE-IGDLAQAIRDRRDS 353

Query: 463 KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPM 522
           +                               ++R +  +  +KL  L  +  LD +  +
Sbjct: 354 ENGTFASNLDIQKNDY-------------DLTISRYKPGLAAQKLRRLKNTVSLDGVAEI 400

Query: 523 MQQIYPYGWAESFVKESIKSNE 544
           + +      A+     +I    
Sbjct: 401 V-RAQSLKDADDNPDAAIFLEA 421


>gi|15612337|ref|NP_223990.1| hypothetical protein jhp1272 [Helicobacter pylori J99]
 gi|4155873|gb|AAD06844.1| putative [Helicobacter pylori J99]
          Length = 1164

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 107/327 (32%), Gaps = 34/327 (10%)

Query: 42  RRLECALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97
           R L+ AL   +    V   +  F     +  SF   +  +F  T  YSL  + L     +
Sbjct: 173 RYLKDALIAYQKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFLAKLNHPFEK 231

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELHPD----TVPD 152
            +L +  +S   N   I E  DF   +  +++   LL +I    + +++ P         
Sbjct: 232 IDLNNVRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILILINHVDMGPIIKDLNDDK 291

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204
               + YE  +  +  ++ E    + TP  VV      L       FK++P         
Sbjct: 292 DPYLHFYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALDN 351

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254
               L D   GTG FL +A     +                   +   +G E     +A+
Sbjct: 352 KNIKLLDFATGTGTFLLEAFRKALEVRKTSDGGASTKEDKYQNLLKQFYGFEYLIAPYAI 411

Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
               +        +   + + +  I   +TL +     +   Y   NP F K+    ++ 
Sbjct: 412 AHLNLSQAFKEEFKKPLKENDTLKIILTNTLIQP---SEIIAYRGLNPIFEKELSNAQEI 468

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338
            + E+     G         + G   +
Sbjct: 469 KKNENILIITGNPPYSGASENKGLFEW 495


>gi|309805400|ref|ZP_07699448.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165285|gb|EFO67520.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
          Length = 333

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F++ +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLKPS----GYAFLIVPKMILSGKDAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|300723990|ref|YP_003713304.1| hypothetical protein XNC1_3132 [Xenorhabdus nematophila ATCC 19061]
 gi|297630521|emb|CBJ91186.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 153

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L        ++  + F TP  V  +   + L     L +  P    TL +P
Sbjct: 10  DFLGSVFMRL-----ELDNKDLQQFFTPWSVARMMAEMQLHDAAGLLQTQP--FVTLCEP 62

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G     A + + + G        L  +  +++P    +    + +  + +      
Sbjct: 63  CCGAGCITLAAADVLRELGHD--PLCSLWVYAIDIDPLATVMAYIQLSLSGIPAA----- 115

Query: 273 SKNIQQGSTLSKDLFTGKRFH 293
              +  G+ L  D     R+ 
Sbjct: 116 ---VTIGNALHDDGNKRTRYT 133


>gi|163816134|ref|ZP_02207502.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759]
 gi|158448554|gb|EDP25549.1| hypothetical protein COPEUT_02318 [Coprococcus eutactus ATCC 27759]
          Length = 684

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 86/300 (28%), Gaps = 50/300 (16%)

Query: 132 LLYKICKN-------FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--EGAEDFMTPRD 182
           LL  I ++        S  +   D             L+     ++   + A  + TP +
Sbjct: 150 LLDDIIQDKKEIETWISEHDDMLDISYKFQKGEDVLGLLYMSVRDIGVRKAAGSYFTPTE 209

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V      +        K      + + DP CGTG FL      V           I   
Sbjct: 210 IVRNMIMDISQDLGGGLK-----GKKVLDPCCGTGNFLIQFSEDV----------DICNI 254

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL---------SKDLFTGK-RF 292
           H  + +  +  +    + + RL          +I+              S+D  +    +
Sbjct: 255 HAFDTDMLSVQLARFNLALTRLAGRENVKAEGDIRTICENVECRDFLAKSEDRISNTVNY 314

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + NPP+G K++       +E+     GR             +F+      L      
Sbjct: 315 DVIIGNPPWGYKFDSAAQKALRENYKTAAGRGAESY-------DIFVERALGLLGDD--- 364

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            G  A VL  + L         S  R+ +     +  +  L  ++F           L  
Sbjct: 365 -GMLAFVLPEAVLDVRN----HSAARQIIANTTNVRRVRFL-DNVFHGVQCPAVAMHLKK 418


>gi|15646081|ref|NP_208263.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori
           26695]
 gi|2314649|gb|AAD08512.1| type IIS restriction enzyme M protein (mod) [Helicobacter pylori
           26695]
          Length = 679

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 103/302 (34%), Gaps = 71/302 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  + R  G    +  +  +TP  V  L   L     D+           ++D   G
Sbjct: 344 GKLFNEMYRWLGFTKDQLNDVVLTPPYVATLLARLSKVNKDSF----------VWDFATG 393

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  +MN +            +              G E+  + H + V  M++   
Sbjct: 394 SAGLLVASMNLMIEDAKKRITSPEELEQKIAHIKAKQLLGIEILSDIHTLAVLNMILMG- 452

Query: 265 ESDPRRDLSKNIQQGSTLS----KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 D S  I     LS    K      + +  + NPP+                   
Sbjct: 453 ------DGSSQILNQDGLSGFDGKVNNEAFKANAFVLNPPYSASGNG------------- 493

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                          M+F+     K++      G A++++ SS    G   + E  +R  
Sbjct: 494 ---------------MVFVEQALEKMQS-----GYASVIIQSSA---GSGKAKEYNVR-- 528

Query: 381 LLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           +LE   + A + +P DLF   +++ T++++    +  + + +V+ IN ++   +  N  K
Sbjct: 529 ILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKK 588

Query: 440 KR 441
            +
Sbjct: 589 AK 590


>gi|108763675|ref|YP_633998.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622]
 gi|108467555|gb|ABF92740.1| hypothetical protein MXAN_5861 [Myxococcus xanthus DK 1622]
          Length = 553

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/258 (21%), Positives = 84/258 (32%), Gaps = 44/258 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E L+ +F S   +    F TP  +     AL L           G   T+ DP+CG G 
Sbjct: 44  EEKLVLQFPSLDRKAVGAFFTPAPLAERTLALALQHVG-------GGPLTVVDPSCGAGA 96

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           FLT A           ++ P +   G EL+PE   +C A            R     ++ 
Sbjct: 97  FLTAAS----------RLRPGVRLCGLELDPEVARLCQA------------RVPEATVRA 134

Query: 279 GSTLSK------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           G  L                   + NPP+       KD          L      +P  S
Sbjct: 135 GDALRDGLEPLLATTPPDHQELWVGNPPYNGTSSVLKDPGTYARLRALLP--LALMPGTS 192

Query: 333 -DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                 F + +A          G  A ++ +S L         + +R+ LLE   +  +V
Sbjct: 193 LRDDFAFFLLVAAHRLATRP--GALAFIIPASFL----DAFMYAPLRQSLLETLSLREVV 246

Query: 392 ALPTDLFFRTNIATYLWI 409
            L    F  T + T + +
Sbjct: 247 DLGPGAFAGTQVRTCITV 264


>gi|296270692|ref|YP_003653324.1| putative type II DNA modification enzyme [Thermobispora bispora DSM
           43833]
 gi|296093479|gb|ADG89431.1| putative type II DNA modification enzyme [Thermobispora bispora DSM
           43833]
          Length = 1338

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 46/204 (22%)

Query: 126 RLEKAGLLYKI--CKNFSGIELHPDTVPDR-----VMSNIYEHLIR-------------- 164
            L    LL  +         +  P  V  +      + ++YE L+               
Sbjct: 395 TLPNNALLTAVRKMCTVRDKDGRPRDVDFQHLGAEELGSVYESLLELEPYADTNGTGPRF 454

Query: 165 ----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGT 216
               +      +    + TP  ++       LDP      +S         T+ DP CG+
Sbjct: 455 KLREKVSGNDRKTTGSYYTPAPLIEALLDSALDPVIDEHAKSGNPDDLLKITVCDPACGS 514

Query: 217 GGFLTDAMNHVADCG----------------SHHKIPPILVPHGQELEPETHAVCVAGML 260
           G FL  A   +A                      +       +G ++ P    +    + 
Sbjct: 515 GHFLVAAARRIAKRYAAMVTGESEPVPSAVREAMRKVVARCIYGVDINPLAAELAKVSLW 574

Query: 261 IRRLES-DPRRDLSKNIQQGSTLS 283
           I  LE   P   L  +I+ G++L 
Sbjct: 575 IESLEPGKPLAFLDAHIKVGNSLL 598


>gi|298345337|ref|YP_003718024.1| putative type I site-specific deoxyribonuclease [Mobiluncus
           curtisii ATCC 43063]
 gi|315655756|ref|ZP_07908654.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|298235398|gb|ADI66530.1| possible type I site-specific deoxyribonuclease [Mobiluncus
           curtisii ATCC 43063]
 gi|315489820|gb|EFU79447.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 179

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 23/163 (14%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILS 411
            RA IV +   LF   + + E ++RR L+EN  +E I+ +P+ +F  +   ++T + + +
Sbjct: 2   SRACIVPNG-VLFRSNSKAYE-QLRRELVENQKLETIIYMPSGVFKPYS-GVSTAILVFT 58

Query: 412 NRKTEERRGKVQLINAT-DLWTSIRNEGKKRRIINDDQRRQILDIYV------SRENGKF 464
                     V L N   D +T         +    D    IL  +        R   + 
Sbjct: 59  KT-DAGGTDDVWLYNMEGDGYTLDDKRDPDEKH---DDIPDILSRWHNLGAERDRARTEK 114

Query: 465 SRMLDY-------RTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           S ++           F + +       R+ +   +  L  L  
Sbjct: 115 SFLVSKSEIVENGYDFSFNKYTETVYERVEYPPTEEILDDLAD 157


>gi|56707657|ref|YP_169553.1| hypothetical protein FTT_0522 [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670128|ref|YP_666685.1| hypothetical protein FTF0522 [Francisella tularensis subsp.
           tularensis FSC198]
 gi|56604149|emb|CAG45155.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320461|emb|CAL08538.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC198]
          Length = 325

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/324 (17%), Positives = 95/324 (29%), Gaps = 58/324 (17%)

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDK 309
              V    M++         D    I     L   +     RF   L+NPPFG    KD 
Sbjct: 1   MARVSKMNMIMHG-------DGHNGIHHNDGLLNVNGIFRNRFDVILTNPPFGTNLGKDN 53

Query: 310 DAVEKEHKN----------------------------GELGRFGPGLPKIS-DGSMLFLM 340
             V +E K                             G+  R      +IS    +LF+ 
Sbjct: 54  SKVSEEDKYTDEKMITHYKKIYGDVYEEELKQVTDNFGKPIRSLYKTGEISVATEVLFVE 113

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              + L+     GGR  IVL    L +        + R +      I  IV+LP DLF  
Sbjct: 114 RCLDLLK----AGGRMGIVLPEGVLNSSNLQ----KAREYFESRAKILLIVSLPQDLFVS 165

Query: 401 TN--IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +   + T L  L              +   + + +++ + +K        +   +   + 
Sbjct: 166 SGATVKTSLVFLKK----------FTVEEQEQYETVKTQAEKEAEQKYQPQLLEIQQKID 215

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
            E      +   R     +        +   LD+T +   E     ++     +      
Sbjct: 216 FEKSIKQHITKLRKALKTK-TAKNKENLQLTLDETIVEHTEYKKKVKQYKAQLKELEAKQ 274

Query: 519 LKPMMQQIYPYGWAESFVKESIKS 542
            +   Q I      E  + E  K+
Sbjct: 275 QEEAKQLIKQKFDYEIPIAEIEKA 298


>gi|208778901|ref|ZP_03246247.1| adenine specific DNA methyltransferase [Francisella novicida FTG]
 gi|208744701|gb|EDZ90999.1| adenine specific DNA methyltransferase [Francisella novicida FTG]
          Length = 1078

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 83/590 (14%), Positives = 171/590 (28%), Gaps = 134/590 (22%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
               V + +     +              F       L  L       N++  I    DN
Sbjct: 225 YHDEVLDTFSRQEAAE------KIPKSNPF-------LRRLFDYVAGTNIDDRIKHTVDN 271

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +F   D    +++  ++        +F                  YE  +  + S++
Sbjct: 272 LADVFRAVDLRKILSKFGRSTKTQDPIVHF------------------YEDFLSEYDSKL 313

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------------------- 208
            +    + TP+ VV      + +   + F  S G+  T                      
Sbjct: 314 RKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQIDSQTTDKRSKSGYKQ 373

Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH---------KIPPILVPHGQELEPE 250
                    + DP  GTG FL +A+  + +              +   I   +G EL   
Sbjct: 374 IEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEEHLIPRLNGFELLMA 433

Query: 251 THAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------------------SKD 285
           ++A+      ML+     +    +    +I   ++L                     +  
Sbjct: 434 SYAMAHLKLDMLLTDTGYKPKSSQSQRFHIYLTNSLEEHHPDTGTLFANWLSNEANEANQ 493

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI---SDGSMLFLMHL 342
           +         + NPP+        + + K  ++ +         +    +D  + F+ + 
Sbjct: 494 IKKDTPVMVVMGNPPYSGISSNTGEWITKLIEDYKYVDGVHFNERKHWLNDDYVKFMRYG 553

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTDLFFRT 401
              +E   NG G  A +     L N         +R  LL+  D I   + L  +     
Sbjct: 554 QYYIEK--NGSGVLAFINPHGFLDNPTFRG----MRYSLLKTYDKIYT-IDLHGN----- 601

Query: 402 NIATYLWILSNRKTEERRG----KVQ-LINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
                    S +K     G     V  ++    +   ++   KK   + +       D+Y
Sbjct: 602 ---------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNNELAEVYH---YDLY 649

Query: 457 VSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFW 515
             R N  +F       + G+++++ L+P       D +     E   +   L P + +  
Sbjct: 650 GKRNNKYEFLIQNSLSSIGFKKVEYLKPYYFFIPKDDSQRTNYEKGFSVVSLFPENVTGI 709

Query: 516 L---DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN 562
           +   D       +       E F++     +  K  K K  K++    + 
Sbjct: 710 VTMGDSFAIAESKQQLQDKLEDFLQTEKTEDNLKQ-KYKLGKNYAKWILE 758


>gi|160932540|ref|ZP_02079930.1| hypothetical protein CLOLEP_01378 [Clostridium leptum DSM 753]
 gi|156868499|gb|EDO61871.1| hypothetical protein CLOLEP_01378 [Clostridium leptum DSM 753]
          Length = 289

 Score = 59.2 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 125 ARLEKAGLLY-KICKNFSGIE-------------LHPDTVPDRVMSNIYEHLIRRFGSEV 170
              +K   LY +I K ++  E                +      + +I+  L     +  
Sbjct: 98  EHRDKREALYLEIIKKYNKQEQEVFPELAAQTVLALEEDPEQDFLGSIFMSL-----NLG 152

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +E      TP  V  L   + +  D+ + K       ++ DP CG G  L  A++     
Sbjct: 153 NEHNGQIFTPYHVCKLMAEVTM--DNTVQKVEQDGYISINDPCCGAGATLIAAIHAARKQ 210

Query: 231 GSHHKIPPILVP--HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                +          Q+++     +C   + +  +        +  ++ G++L++ +  
Sbjct: 211 LEKTNLNYQNHLLVVAQDIDETVALMCYIQLSLLGV--------AGYVKVGNSLTEPMTD 262

Query: 289 GKRFHYCLSNPPF 301
                     P +
Sbjct: 263 NDDKENYWFTPMY 275


>gi|302543769|ref|ZP_07296111.1| DNA modification methyltransferase-related protein [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461387|gb|EFL24480.1| DNA modification methyltransferase-related protein [Streptomyces
           himastatinicus ATCC 53653]
          Length = 929

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 86/275 (31%), Gaps = 62/275 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPR-DVVHLATALLLDPDDALFKES----------- 202
              ++E  +               T + D+  +   ++++P      ++           
Sbjct: 277 FGTLFEGSME---ESERHAQGAHFTSQTDIAKIVGPVIVNPWRERISKAGAIPELEKLLL 333

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------------PILVPHG 244
                T+ DP CG+G FL  A   +       +                    P     G
Sbjct: 334 ELSSYTVLDPACGSGNFLYVAYRELRRIEHEIQNLISERRRGRHVGQQSISYVPTDHFFG 393

Query: 245 QELEPETHAVCVAGMLIR----------RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            ++ P    V    M++             E  P  +LS  I     L  +     + + 
Sbjct: 394 IDINPFAVEVAKVTMMLAKKLSTDELGDHQEVLPLDNLSGTIVAADALFSEW---PKANA 450

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPPF  +     D +  E+      R  P +  +SD    F+ +   K       GG
Sbjct: 451 IVGNPPFLGR-RGMIDDLGAEYCQLL-SREYPNISGVSD----FVTYWFPKAHAHLPPGG 504

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           RA +V + S          E++ R+  L  D IEA
Sbjct: 505 RAGLVATKSI--------RENDSRKSSL--DYIEA 529


>gi|329919943|ref|ZP_08276845.1| hypothetical protein HMPREF9210_0652 [Lactobacillus iners SPIN
           1401G]
 gi|328936830|gb|EGG33266.1| hypothetical protein HMPREF9210_0652 [Lactobacillus iners SPIN
           1401G]
          Length = 333

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F+  +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|300949931|ref|ZP_07163890.1| N-6 DNA Methylase [Escherichia coli MS 116-1]
 gi|300450699|gb|EFK14319.1| N-6 DNA Methylase [Escherichia coli MS 116-1]
          Length = 372

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 292 FHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           F   + NPPF   +W  D   +  E    +       +P      ++F+  +   L+   
Sbjct: 72  FDVAVCNPPFTLPEWRDDYFKIISEIGADKYISVSKYVP----AEIIFISQVIRFLKK-- 125

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GG A I+L    +F  R   G   +RR+LL    I  ++ LP ++F RT   T++ I 
Sbjct: 126 --GGEAGIILPDG-IFTARKFIG---LRRYLLNEHSITKVIELPRNIFKRTEAKTHILIF 179

Query: 411 SNRKTEERRGKVQL 424
           + +       K+QL
Sbjct: 180 NKKIMPHH--KIQL 191


>gi|308185103|ref|YP_003929236.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308061023|gb|ADO02919.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 844

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 94/320 (29%), Gaps = 39/320 (12%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
                  +  +   Y      +        +    F     +    +   N R+      
Sbjct: 189 SSIFNNFKEYL---YEELSFEDFSDAFAQTLTYSLFIAKLNHPFEKIDLDNVRS------ 239

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPDRVMSNIY 159
            S S N   I E  DF   +  +++   LL +I    + +++               + Y
Sbjct: 240 -SISKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLNDDKDPYLHFY 298

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------GMIRTLYD 211
           E  +  +  ++ E    + TP  VV      L       FK++P             L D
Sbjct: 299 ETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTRFKDAPLGLKSALDNENIKLLD 358

Query: 212 PTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAVCVAGM-- 259
              GTG FL +A     +                   +   +G E     +A+    +  
Sbjct: 359 FATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLSQ 418

Query: 260 -LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                 +   + + +  I   +TL +     +   Y   +P F K+ +  ++  + E+  
Sbjct: 419 AFKEEFKKPLKENDALQIILTNTLIQP---SEITAYRGLSPIFEKELKSAQEIKKDENIL 475

Query: 319 GELGRFGPGLPKISDGSMLF 338
              G         ++G   +
Sbjct: 476 IITGNPPYSGASSNEGLFEW 495


>gi|217034431|ref|ZP_03439844.1| hypothetical protein HP9810_11g13 [Helicobacter pylori 98-10]
 gi|216943101|gb|EEC22575.1| hypothetical protein HP9810_11g13 [Helicobacter pylori 98-10]
          Length = 839

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 106/328 (32%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ +    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRKSKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +   L    +   + + +  I   +TL +     +   Y   NP F  +    ++
Sbjct: 411 IAHLNLSQSLKEEFKKPLKENDALKIILTNTLIQP---SEITAYRGLNPIFETELLNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIVTGNPPYSGASSNEGLFEW 495


>gi|282878650|ref|ZP_06287419.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
 gi|281299195|gb|EFA91595.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
          Length = 1020

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 63/274 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S IYE+ +     E+      F TP ++V L  +      D L          + DP C
Sbjct: 319 LSEIYENFLG----ELKHERGQFYTPYNLVELILS------DKLPISKSNYNVKILDPAC 368

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELEPETHAVCVAGMLIRR 263
           G+G FL ++   +     +      +             +G E++     V    + +  
Sbjct: 369 GSGIFLVESYKRLIKRWKNANNTNKISFEKLKNLLLDNIYGIEIDETAIKVAAFSLYLAL 428

Query: 264 LE----------------SDPRRDLSKNIQ-QGSTLSK-------DLFTGKRFHYCLSNP 299
           ++                         NI+ QG  L +       D     +    + NP
Sbjct: 429 IDELDPKTLWIETNYQLPYLIFDSEDTNIKNQGRNLWRKDTIGEVDTHLFPKVDLIIGNP 488

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG K         KE+ +         LP              +K  +     G  A++
Sbjct: 489 PFGTKNLPQ---TIKEYCSKYKFSNEYVLP------------FIHK-SVEFCPTGEIALI 532

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +S  L N          R+WL   + +E +  L
Sbjct: 533 FNSKVLTN--TQKPYQNFRKWLFNANYVEKVYNL 564


>gi|282900924|ref|ZP_06308858.1| Putative Adenine specific DNA methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194193|gb|EFA69156.1| Putative Adenine specific DNA methyltransferase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1080

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 97/342 (28%), Gaps = 77/342 (22%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI----------ELHPDTVPDRVMSN 157
           +   + +F+D     +  +L    L+  I   F  +          +       + ++  
Sbjct: 282 NPFLRKLFQDVS-ERSAEKLGD-DLIGAIADIFVILRTTKMDAILSDFEMKMNREDIVIR 339

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTC 214
            YE  +  +  ++ E    + TP  VV      +       F +  G      T+ DP C
Sbjct: 340 FYEDFLAAYKPQMRERRGVYYTPEPVVSYMVRSVDILVQEKFNKPLGLADPTVTILDPAC 399

Query: 215 GTGGFLTDAMNHV-----------------ADCGSHHKIPPILVPHGQELEPETHAVC-- 255
           GTG FL      +                      + +   +    G EL    +A+   
Sbjct: 400 GTGTFLLYIFQLIYQRFQESPATLTEGLADRSWSGYVEERLLPRIFGFELLMSPYAIAHL 459

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH---------------------- 293
             G+ ++             +   +TL       +                         
Sbjct: 460 KIGLFLQETGYRFDGAKRLGVYLINTLEDITLREETQQLSLNIPQMEELIAEEAKAGARV 519

Query: 294 -------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
                    + NPP+     ++ +   KE  N     F  G   + + +  +L     K 
Sbjct: 520 KKEEPIMVVIGNPPYSG-HSENNNPWIKELVNDYY--FVDG-KPLGEKNPKWLQDDYVKF 575

Query: 347 ------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                  +  +G G  A + +   L N         +R++L+
Sbjct: 576 IRFAQWRIDKSGQGVLAFISNHGFLDNPTFRG----MRQYLI 613


>gi|329667616|gb|AEB93564.1| adenine-specific DNA methylase [Lactobacillus johnsonii DPC 6026]
          Length = 333

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 119/354 (33%), Gaps = 49/354 (13%)

Query: 98  NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152
            +L+  +  SFS      F+  +  +   ++E        + ++ + +  ++   + +P 
Sbjct: 16  EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--ENLPR 71

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   I+  L  +  ++ +       TP  V  +   +         K  P   +T+ DP
Sbjct: 72  ALKVQIFTLLALKAITQDASDYNLMPTPSVVATIIALIW-------QKIVPTGKKTVVDP 124

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             GTG  L    + +      +         G + E     +   G  +  L+ D     
Sbjct: 125 AIGTGNLL---YSVIRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                    L  D +  ++    LS+ P G  +  D +A   E+   E   F        
Sbjct: 178 ----YCQDAL--DPWMIEKADIVLSDLPVGY-YPLDNNAQRFENHAKEGHSFAHT----- 225

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+  + N L+         A ++    LF G    G +E   WL +   I+AIV 
Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           LP ++F        + +  N        +V +  +++     S+     K    
Sbjct: 274 LPDNMFSSQIQQKSILVFQNHGDHAVEREVLVAKLDSLKGPESLVAFNMKLNDW 327


>gi|227889675|ref|ZP_04007480.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus johnsonii ATCC 33200]
 gi|227849818|gb|EEJ59904.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus johnsonii ATCC 33200]
          Length = 333

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 120/360 (33%), Gaps = 49/360 (13%)

Query: 98  NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152
            +L+  +  SFS      F+  +  +   ++E        + ++ + +  ++   D +P 
Sbjct: 16  EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   I+  L  +  ++ +       TP  V  +   +         K  P   + + DP
Sbjct: 72  ALKVQIFTLLALKAITQDARDYNLMPTPSVVATIIALIW-------QKIVPTGKKIVVDP 124

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             GTG  L    + V      +         G + E     +   G  +  L+ D     
Sbjct: 125 AIGTGNLL---YSVVRQLIQENHSQNNYNLIGIDNEESLLDLADIGAHLEDLKIDL---- 177

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                    L  D +  ++    LS+ P G  +  D +A   E+   E   F        
Sbjct: 178 ----YCQDAL--DPWMIEKADVVLSDLPVGY-YPLDNNAQRYENHAKEGHSFAHT----- 225

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+  + N L+         A ++    LF G    G +E   WL +   I++IV 
Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQSIVD 273

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRIINDDQRR 450
           LP ++F        + +  N        +V +  +++     S+     K     D  + 
Sbjct: 274 LPDNMFSSQIQQKSILVFQNHGDHAVEREVLVAKLDSLKGPESLVAFNMKLNDWYDKNKD 333


>gi|169347027|ref|ZP_02865969.1| putative restriction enzyme alpha subunit [Clostridium perfringens
           C str. JGS1495]
 gi|169296710|gb|EDS78839.1| putative restriction enzyme alpha subunit [Clostridium perfringens
           C str. JGS1495]
          Length = 292

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 91/281 (32%), Gaps = 60/281 (21%)

Query: 209 LYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           + D TCG+G FL  AM+++            +        G E + E  A+  A MLI  
Sbjct: 1   MIDATCGSGAFLVKAMSNMIQEVGGLNAKEAEDIKQNKLFGIEFDREIFALACANMLIH- 59

Query: 264 LESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                 +D   N++Q  T  +        K     L NPPF             E K G 
Sbjct: 60  ------KDGKTNLEQLDTREEQACKWIKSKNISKVLMNPPF-------------ERKYGC 100

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                                +   +      G + A +L    L        E +  + 
Sbjct: 101 K-------------------KIVENVLNNVPNGIKCAFILPDKKL--------EKDKMQN 133

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           LL+   +  I+ LP  LF    I T +++    K +  +         D    ++N+G+ 
Sbjct: 134 LLKKHTLNMIIKLPEKLF-DAGITTSIFVFETGKPQGDKKIFACYMEDDGLERVKNQGRH 192

Query: 441 --RRIIND--DQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
             +   +D  +   +++   V  E      +       Y++
Sbjct: 193 DIKNKWSDIKNYWLEVVRTKVDSEFNTHQWLNPAENLSYQK 233


>gi|256960119|ref|ZP_05564290.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis Merz96]
 gi|293388650|ref|ZP_06633144.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|312906911|ref|ZP_07765908.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|256950615|gb|EEU67247.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis Merz96]
 gi|291081967|gb|EFE18930.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|310627165|gb|EFQ10448.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|315032550|gb|EFT44482.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
 gi|323480178|gb|ADX79617.1| hypothetical protein EF62_1372 [Enterococcus faecalis 62]
          Length = 252

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157
              +F+   F       E+   LYK               + F+ +    +     ++  
Sbjct: 37  ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGE 89

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L        ++ A  F TP +V  L   +  +  D   K    ++   YDP  G G
Sbjct: 90  LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 142

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             L    N + + G +      L     +++    ++      +  +++   R  +
Sbjct: 143 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 196


>gi|293383874|ref|ZP_06629780.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|312978834|ref|ZP_07790560.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|291078791|gb|EFE16155.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|311288271|gb|EFQ66827.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
          Length = 251

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157
              +F+   F       E+   LYK               + F+ +    +     ++  
Sbjct: 36  ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGE 88

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L        ++ A  F TP +V  L   +  +  D   K    ++   YDP  G G
Sbjct: 89  LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 141

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             L    N + + G +      L     +++    ++      +  +++   R  +
Sbjct: 142 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 195


>gi|15895576|ref|NP_348925.1| DNA modification methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|15025315|gb|AAK80265.1|AE007731_10 DNA modification methyltransferase [Clostridium acetobutylicum ATCC
           824]
 gi|325509725|gb|ADZ21361.1| DNA modification methyltransferase [Clostridium acetobutylicum EA
           2018]
          Length = 581

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 98/317 (30%), Gaps = 50/317 (15%)

Query: 113 AIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
             F+  D   + I +        K    F       D   +   S  Y + +        
Sbjct: 4   DFFKKIDDIYNEIKKSGDIETKLKYINKFRK-----DLDVNYSFSEKYYNFVSM-----K 53

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  + +      +  +D            + DP CG G  +     ++ +  
Sbjct: 54  KERGVVYTPLKISNYIIDSTISEED----IIKNPFLKIVDPACGCGNIIIPCFIYLRNIY 109

Query: 232 -SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST------LSK 284
             +      +       E   + +    +    ++ +  + L+ ++   S       L K
Sbjct: 110 IKNLDKINNINKLELREENINYHIIKNNLFGYDVDLNAIKVLTIDLFCESKCFSSNFLCK 169

Query: 285 DLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           D    +   ++   LSNPP+         ++ KE+       + P     +D S  F   
Sbjct: 170 DFLLDEIGIKYDIFLSNPPY-----VGLKSINKEYSAILKTMY-PSYKDKADISYCFFEK 223

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR- 400
               L++     G+   + S   L    + SGE E+RR L+E   +  IV      F+  
Sbjct: 224 SILCLKID----GKLGFITSRYFL---ESQSGE-ELRRILVEKCSLYKIVD-----FYGI 270

Query: 401 -----TNIATYLWILSN 412
                  I T +  L  
Sbjct: 271 RPFKKAGIDTVMIFLER 287


>gi|163868224|ref|YP_001609432.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|163868234|ref|YP_001609442.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017879|emb|CAK01437.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017889|emb|CAK01447.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1657

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 102/373 (27%), Gaps = 45/373 (12%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             + S   + I  + D ++     ++    Y   K  +     P    + ++  +YE    
Sbjct: 816  NAISQAMEKILAELDKTNIKQVSKELQEFYDSVKFRASGITSPQARQNLII-KLYEDFFT 874

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP +VV      + D     F +S G    ++ DP  GTG F+T  
Sbjct: 875  KAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 934

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282
            +          +       H  E+    + +    +               K+I    T 
Sbjct: 935  LQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTF 994

Query: 283  SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                                +          L NPP+  K + + D  +         R 
Sbjct: 995  RMLEEKNLLQELFKENSEYLEHQKKLDIKVILGNPPYSTKQKNENDNAKNTPYPILDKRI 1054

Query: 325  GPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                   S  + +  ++                 G    V ++  +     G     +R+
Sbjct: 1055 SETYAAHSKATNMQALYDSYIRAIRWASDRIGNAGVIGFVTNAGFI----TGHSMDSLRK 1110

Query: 380  WLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQL 424
             L+E      I  L  +              +F   +     + IL      ++ GK+  
Sbjct: 1111 CLVEEFSSLYIFHLRGNARTSGEQRKKESGGIFGSGSRAPIAISILVKNPNAQQHGKIYF 1170

Query: 425  INATDLWTSIRNE 437
             +  D        
Sbjct: 1171 RDIGDYLNREEKL 1183


>gi|296100883|ref|YP_003611029.1| hypothetical protein ECL_00514 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055342|gb|ADF60080.1| hypothetical protein ECL_00514 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 228

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 35/221 (15%)

Query: 101 ESYIASFSDNAK-----AIFEDF--------------------DFSSTIARLEKAGLLYK 135
           +++++ FS  A+      +FEDF                     +   + R EK  +  +
Sbjct: 9   KAFLSLFSQTARYHHRHQVFEDFVSCSVIALQNSLQFCDKREEKYMRIVGRYEKTDI-SR 67

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + +  + +    D  P   +  ++  L         +    F TP ++  +   + L   
Sbjct: 68  MAQLLAHVTNGLDETPGDFLGRVFMQL-----ELGDKYRGQFFTPWNIGLMMARMQLGNV 122

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           +  F++ P +  TL +P CG G         + + G        +    Q+++P    + 
Sbjct: 123 EDNFRDKPFI--TLSEPACGAGCMALAFAFVLREAGYSPHRYLWVSA--QDIDPLAAGMA 178

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              + +  +  +     S N ++   L         + + L
Sbjct: 179 YIQLSLSGVPGEVVIGNSLNDERRRILHTPAHYMGNWSFLL 219


>gi|227893247|ref|ZP_04011052.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
 gi|227864930|gb|EEJ72351.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus ultunensis DSM 16047]
          Length = 338

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/368 (14%), Positives = 115/368 (31%), Gaps = 47/368 (12%)

Query: 84  SEYSLSTLGSTNTR--NNLESYIA-SFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           S  +   L +        L++ +  SF++     F++ +      ++E     +   +  
Sbjct: 5   SMENFEKLFNQFLDCVQTLQTALNVSFTEALVETFDNLEQGKI--KVENGAPDHATVEKL 62

Query: 141 SGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           S     L+ D +  +  + ++  L  +  ++    A    TP  +  +   L+       
Sbjct: 63  SKKYQALNYDQISQKDKAQVFTFLTLKAVNDDGLNANQMPTPPAISTVIAMLMHKLLKDE 122

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                     + DPT GTG  L   +  +                G + + E   +    
Sbjct: 123 -------KMEVVDPTVGTGNLLFSIVAQLKALNHS---KDNYQLVGIDNDEEMLNLA--D 170

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           +     + D        +     L    +        +S+ P G             +  
Sbjct: 171 VAAHLNDIDIE------LYCQDALMP--WMCPNADAIVSDLPIGY-------YPIDNNAK 215

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
               R   G    S   +L +  +   L+      G A +V+  S L    +G   ++  
Sbjct: 216 NFENRAKKGH---SLAHLLLIEQIIKNLKP----NGYAFLVVPKSIL----SGKIGADFM 264

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRN 436
            WL +   ++AIV LP D+F        + +  N   + +  +V L  +++     S+  
Sbjct: 265 PWLTKKVYLKAIVELPDDMFRNKFNQKSILVFQNHGDQAKASEVLLSKLDSLKKEESLIR 324

Query: 437 EGKKRRII 444
              K    
Sbjct: 325 FNVKLNEW 332


>gi|307307924|ref|ZP_07587649.1| N-6 DNA methylase [Sinorhizobium meliloti BL225C]
 gi|306901540|gb|EFN32143.1| N-6 DNA methylase [Sinorhizobium meliloti BL225C]
          Length = 534

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 89/292 (30%), Gaps = 35/292 (11%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           ++    + +   P    +  +  +Y  ++             + TP  +      + +D 
Sbjct: 46  EVISFRTRLAALPTHERNYWIGTLYTLMM---SPADRRAQAAYFTPPYLADAVIDMAVDH 102

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
              + +        + DP  G   FL+   + +       K       +G E++     +
Sbjct: 103 GFDVARHD------VLDPAAGGAAFLSLIADRMYR-AGLPKKTVTRRLNGIEIDE---RL 152

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                 +   + +  +D  + ++   ++  D      +   ++NPP+G+    +    + 
Sbjct: 153 ARMSEFLIAEQLEGFKDR-EIVKVRDSIHVD--VDGSYDLVIANPPYGRMRPDEVSHEKW 209

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                        +         F        +     GG  A+V+ SS  F G      
Sbjct: 210 SKVAYGNHINKYAI---------FTELCIRVAKP----GGLVALVIPSS--FRGGPLY-- 252

Query: 375 SEIRRWLLENDLIEAI--VALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
             +R ++     I A+  V    D+F        + ++        + +V+ 
Sbjct: 253 DRMRSYIASQGQILALGAVTNRDDVFADVAQDVSVLLMRKGIPHRTKQRVKF 304


>gi|256419629|ref|YP_003120282.1| hypothetical protein Cpin_0583 [Chitinophaga pinensis DSM 2588]
 gi|256034537|gb|ACU58081.1| hypothetical protein Cpin_0583 [Chitinophaga pinensis DSM 2588]
          Length = 882

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 128/401 (31%), Gaps = 72/401 (17%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYS-FYNT--SEYSLSTLGSTNTRNNLESYIASFS 108
           +  +R     F G+    E  + V   S F++   + +SL         +   SY ++F+
Sbjct: 11  KQKIRSLINQFIGNLNIEEKKISVKDLSIFFSVLLATFSLRKNSGLKIDSEYASYRSAFA 70

Query: 109 DNAKAIFEDF----DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
              + I + F    D  S I    +  LL  I +    I    D   D ++S  Y++L R
Sbjct: 71  SEFELIQQRFPELMDIFSLIESQIRTELLINIFEKLDAIYQEEDGDLDDIISWSYQYLKR 130

Query: 165 RFGSEVSEGAEDFMTPRDVVHL-----------ATALLLDPDDALFKESPGMIRTLYDPT 213
                  +             L               ++    + FK +      L D  
Sbjct: 131 DLEKAAFKKVGQDNVKIKNSDLLFTTQFFTDKYMVKYIVTQALSGFKGARIRDVVLIDCA 190

Query: 214 CGTGGFLTDAMNHVADCGSH----------HKIPPILVPHGQELEPETHAVCVAGMLIR- 262
            G G FLT   N +                  +       G +L+     +    + ++ 
Sbjct: 191 SGGGNFLTYGFNILFRLYQQTFPSWSNQAIVDVLLQEAITGYDLDNNLSKIAALSLFVKA 250

Query: 263 RLESDPRRDLSKNIQQGST------LSKDLFTGK-----------------RFHYCLSNP 299
            + + P    + NI  G        L+ D+ +                   +    L+NP
Sbjct: 251 SIYAIPSPATTINIYGGQADDNLGFLNPDIISDTIGALTFRTRLDKIDKAGKIKVFLTNP 310

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAA 357
           PF  K + D        KN             S G +   F+  +  ++    NG  R  
Sbjct: 311 PFMGKRDMDTSLKNYLQKNI----------PESKGDLCVSFIQRIIQEM----NGHDRLG 356

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +V  ++ L+     S  S+ R+  LE + +   V L ++ F
Sbjct: 357 VVSQNNWLY----LSSFSDFRKMFLEKETLIECVDLGSNAF 393


>gi|208434589|ref|YP_002266255.1| hypothetical protein HPG27_630 [Helicobacter pylori G27]
 gi|208432518|gb|ACI27389.1| hypothetical protein HPG27_630 [Helicobacter pylori G27]
          Length = 887

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 94/371 (25%), Gaps = 52/371 (14%)

Query: 36  LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           L     +        L   R  + +        ++     +                 L 
Sbjct: 33  LKMIFDKNPEFFHDFLNSLRDNIHQNIREDEALDMITSHIITKP----------IFDALF 82

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             N +N +   +                      L+    LY+  K  +     P +  +
Sbjct: 83  GDNIKNPIAKALDKMVLK----LSTLGLEGETKDLKN---LYESVKTEATHAKSPKSQQE 135

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
             + N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 136 L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 194

Query: 212 PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTG F+    +  +        K          ++   ++ + +  +       D  
Sbjct: 195 PFTGTGSFIARLLSKENKLISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 254

Query: 270 RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPF--GKK 304
               KNI    +L                        KD    +     + NPP+  G K
Sbjct: 255 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKEIKDTLADQNIRVIIGNPPYSSGAK 314

Query: 305 WEKDKDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            + D +      K  +L     G     K+   +   L+             G    V++
Sbjct: 315 SQNDNNQNLSHPKLKKLVYEKYGKNSTAKVGKATRDALIQSIRMASDVVKDKGVIGFVVN 374

Query: 362 SSPLFNGRAGS 372
            S + +     
Sbjct: 375 GSFIDSKSTDG 385


>gi|226946192|ref|YP_002801265.1| DNA methylase [Azotobacter vinelandii DJ]
 gi|226721119|gb|ACO80290.1| DNA methylase [Azotobacter vinelandii DJ]
          Length = 212

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+  + + L       GRAA+VL    LF        + ++R LLE   +  IV LP  
Sbjct: 22  LFMALIMHLLRHDT---GRAAVVLPDGFLFGEGVK---TTLKRELLEEFNLHTIVRLPKG 75

Query: 397 LFFR-TNIATYLWILSNRKTEERRG 420
           +F   T+IAT +         +   
Sbjct: 76  VFAPYTSIATNILFFEKGGPTQDLW 100


>gi|304390893|ref|ZP_07372845.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304325776|gb|EFL93022.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 179

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 60/163 (36%), Gaps = 23/163 (14%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYLWILS 411
            RA IV +   LF   + + E ++RR L+EN  +EAI+ +P+ +F  +   ++T + + +
Sbjct: 2   SRACIVPNG-VLFRSNSKAYE-QLRRELVENQKLEAIIYMPSGVFKPYS-GVSTAILVFT 58

Query: 412 NRKTEERRGKVQLINAT-DLWTSIRNEGKKRRIINDDQRRQILDIY------VSRENGKF 464
                     V L N   D +T         +    D    IL  +        R   + 
Sbjct: 59  KT-DAGGTDDVWLYNMEGDGYTLDDKRDPDEKH---DDIPDILSRWRNLGAERDRARTEK 114

Query: 465 SRMLDY-------RTFGYRRIKVLRPLRMSFILDKTGLARLEA 500
           S ++           F + +       R+ +   +  L  L  
Sbjct: 115 SFLVSKSEIVENGYDFSFNKYTETVYERVEYPPTEEILDDLAD 157


>gi|170717953|ref|YP_001785001.1| type I restriction enzyme M subunit [Haemophilus somnus 2336]
 gi|168826082|gb|ACA31453.1| putative type I restriction enzyme M subunit [Haemophilus somnus
           2336]
          Length = 265

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 30/233 (12%)

Query: 79  SFYNTSE--YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
             Y  SE  Y   TL  +     L +Y      N +  F         AR   +    ++
Sbjct: 17  PHYRRSEVFYDFITL--SALDMYLVTYRDQAEPNLRERFAHAK-----ARYSDSE-FTQL 68

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +  +             + +++ +L     +        + TP  +  L   + L   D
Sbjct: 69  AELLAVTVNALTQKRYDFLGSVFMNL-----NLGDGYRGQYFTPSHIADLMAKVTLQDCD 123

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +  +      TL +PTCG+G  +   +N +    + +     L  H Q+++     +C 
Sbjct: 124 RIISQQ--GFVTLSEPTCGSGVMVIGCVNAM--FDAKYNPQQQLWVHCQDVDFTAAMMCY 179

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             + +  +           I  G TL       K   Y L++       + ++
Sbjct: 180 IQLSLLHI--------PACIVVGDTLLN---ETKIQMYTLAHLMGNWSHKLEQ 221


>gi|229048167|ref|ZP_04193736.1| N-6 DNA methylase [Bacillus cereus AH676]
 gi|228723154|gb|EEL74530.1| N-6 DNA methylase [Bacillus cereus AH676]
          Length = 1037

 Score = 58.8 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 61/488 (12%), Positives = 136/488 (27%), Gaps = 116/488 (23%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
            + +   NT+N++  Y              F   + +  +      +++ + F       
Sbjct: 293 FNYIDKGNTKNDINRYNGGL----------FKEDTVLNNIVIPDKDFEVIEKFFDYNFK- 341

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVS---------EGAEDFMTPRDVVHLATALLLDPDDAL 198
           D +   ++ +I+E  I    +            +    F TP  +        +D     
Sbjct: 342 DELTIDILGHIFEQSISDIEALKGIKKEEIGSRKANGVFYTPEYITSYIVKDAIDDWIEN 401

Query: 199 FKESPGMI----------------------------------RTLYDPTCGTGGFLTDAM 224
            K                                          + D  CG+G FL    
Sbjct: 402 EKVRLDFNSLTDWKNAKSKSAESRSINRHIEKLKELKDALNNIKILDAACGSGAFLIKVF 461

Query: 225 NHVADCGSHHKIP--------------------------PILVPHGQELEPETHAVCVAG 258
            ++       +                                 +G +L  E+  +    
Sbjct: 462 EYLVQKHKEIQKEIADLNALRTGGIENNLALDLDMDREILKNNIYGIDLNKESVEITKLS 521

Query: 259 MLIRRLESD-PRRDLSKNIQQGSTLSKDL-----------------FTGKRFHYCLSNPP 300
           + ++   +  P   L  NI  G+++  D                       F   + NPP
Sbjct: 522 LWLQTANNKKPLTTLDDNIIVGNSIVNDEEIAPARVINWEKEFTSVQEKGGFDIIVGNPP 581

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +        D ++ +        +   L    D S++F+    + L       G  ++++
Sbjct: 582 Y-----VPIDFLDSDTSEYFQEEYQDILKNKWDISVIFMHKCVSFLNSS----GVLSMIV 632

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             + L     G+  ++ R        +  I++LP D+F   N+ T ++I +      +  
Sbjct: 633 PRTWL----TGANYTKFREVFSSELNLNKIISLPKDVFPDANVDTCIFIGTKDNPGNKIE 688

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           K  L    D+   I         ++      I   ++++               Y +I+V
Sbjct: 689 KNYLAYKYDIKAKISVLNVIDDDMDSIPIDFIKQHHMNKIFTDI-----NSYKLYNKIQV 743

Query: 481 LRPLRMSF 488
           L     ++
Sbjct: 744 LLKDESNY 751


>gi|317179844|dbj|BAJ57630.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32]
          Length = 1112

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 KYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   NP F  +    ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELLNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIVTGNPPYSGASSNEGLFEW 495


>gi|313158825|gb|EFR58208.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 258

 Score = 58.4 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 26/176 (14%)

Query: 107 FSDNAKAIFEDFDFSSTIA---RLEKAGLLYKICKNFSGIELHPDTVPDRV------MSN 157
           F D    I + F F +      R +   +  +  + F  I L  +              N
Sbjct: 30  FDDMLAYIVDLFSFDNPWEPHGRYKDPEIRKRFFELFQEIVLLMNKKICDDREWYDPFGN 89

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y+  I       +  A  F TP  +V L  ++     +   +E  G      DP CG+G
Sbjct: 90  LYQTQIASHARRAN--AGQFFTPEHIVDLMVSI-----NGEGRELTGKGLNFGDPACGSG 142

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            FL  A          H   P     G++++     + V   ++  +  +     S
Sbjct: 143 RFLIAA----------HAKFPGNYCCGEDIDRTCALMTVCNFILHGVNGEVIWHDS 188


>gi|315171663|gb|EFU15680.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
          Length = 251

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157
              +F+   F       E+   LYK               + F+ +    +     ++  
Sbjct: 36  ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETSTDILGE 88

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L        ++ A  F TP +V  L   +  +  D   K    ++   YDP  G G
Sbjct: 89  LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 141

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             L    N + + G +      L     +++    ++      +  +++   R  +
Sbjct: 142 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 195


>gi|307299102|ref|ZP_07578904.1| adenine specific DNA methyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915527|gb|EFN45912.1| adenine specific DNA methyltransferase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1028

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 84/300 (28%), Gaps = 57/300 (19%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           L  A +   I   F     + +      + + YE  +  +     E    + TP  VV  
Sbjct: 279 LATADV-RGILDRF-----YHEGKGSDPIIHFYETFLAEYDPSTREKRGVYYTPEPVVSY 332

Query: 187 AT---ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---------- 233
                 ++L               T+ DP  GT  FL  A     +  S           
Sbjct: 333 IVRSLNIILKEKFGKADGFASEGVTVLDPAAGTMTFLAQAAKLAVEEYSQKYGEGMVPGL 392

Query: 234 HKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
            +   +   +  EL    +A+    M   +  L      D    +   + L  +     +
Sbjct: 393 IRDHILKDFYAFELMMAPYAIGHMKMSFFLEELGYRMEDDERFKLYLTNALDMEEHGQAK 452

Query: 292 FH----------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           +                         L NPP+        + + +E K      F  G  
Sbjct: 453 YVGTTSLAQESELAGQVKKEEDILVILGNPPYSGHSSNKGNWISEEIKRYF---FSDG-K 508

Query: 330 KISDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            + + +  +L     K       ++     G   IV + S L N         +R+ L++
Sbjct: 509 PLGERNPKWLQDDYVKFIRFAQWKIESAKKGIVGIVTNHSYLENATFRG----MRKSLMK 564


>gi|330814761|ref|YP_004362936.1| type I restriction-modification system, M subunit, putative
           [Burkholderia gladioli BSR3]
 gi|327374753|gb|AEA66104.1| type I restriction-modification system, M subunit, putative
           [Burkholderia gladioli BSR3]
          Length = 1050

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 90/299 (30%), Gaps = 61/299 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S+IYE  +    ++       F TP  +V      +L      +         + DP C
Sbjct: 339 ISSIYETFVSDRAAD-----GVFYTPPYLVDFVLDRVLPWSGHEWDLK------ILDPAC 387

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRR 263
           G+G FL  A   +            +              G + +P    V    + +  
Sbjct: 388 GSGIFLVKAFQRLVHRWKQANPGQSIRAETLRNLLERNIFGVDKDPHAVRVACFSLYLAM 447

Query: 264 LESDPRRDLSKNI-----QQGSTLSKDLFTGKR-----------FHYCLSNPPFGKKWEK 307
            +    R     I     ++   +  D F   +           +   + N P+G     
Sbjct: 448 CDEVEPRHYWTQIVFPTMREQRLVCSDFFAEDKGGFHTISDAGSYDLVVGNAPWGDSLVT 507

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS-SSPLF 366
           +              R    +     G + FL    + L       GR A++ S +S LF
Sbjct: 508 NAAIGWAS-----DDRHKWTVANKDIGGL-FLAKAMHLLARH----GRIAMIQSANSLLF 557

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPT---DLF----FRTNI---ATYLWILSNRKT 415
           NG A +     R+ L     +E I  L      +F      T +      + I+S  K 
Sbjct: 558 NGSAKA--LAFRQELFTTHRVEEIYNLSALRFKVFKRKSHTTKMSISPACVVIMSGEKP 614


>gi|218132263|ref|ZP_03461067.1| hypothetical protein BACPEC_00120 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992778|gb|EEC58779.1| hypothetical protein BACPEC_00120 [Bacteroides pectinophilus ATCC
           43243]
          Length = 418

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 67/210 (31%), Gaps = 37/210 (17%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI-CKNFSGIE 144
            +   L   N +N +E+ +      +  I          + L++      I   +F  I 
Sbjct: 227 LTSYKLVMQNIQNAIENVLKESDIKSSRI---NYIKQVFSTLQENTKFADIPLGHFKSIT 283

Query: 145 LHPDTVPD-------------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
            + + +                 +   Y   I ++      G    +TP+ +      L 
Sbjct: 284 WYIEQLELKIKPMMDYADSTVDALGVFYHEFI-KYSGGDGSGLGIVLTPQHLTEFMCEL- 341

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPPILVPHGQELEP 249
                     +      + D  CG+G FL  AM+H+         +       +G E + 
Sbjct: 342 ---------ANVNKNSRVVDICCGSGSFLVTAMSHMFKDANPDEVENIRKNGLYGVEFDD 392

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
             + + +A M+IR       +D   NI +G
Sbjct: 393 GLYTLAIANMIIR-------KDGKSNIYKG 415


>gi|332885017|gb|EGK05270.1| hypothetical protein HMPREF9456_02940 [Dysgonomonas mossii DSM
           22836]
          Length = 1797

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 84/273 (30%), Gaps = 65/273 (23%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             +   +  Y+  I    S  +     F TP  VV              F ++   I TL
Sbjct: 83  RDNTDSAIEYKQYI---NSIKNSVLTAFYTPPLVVQALA--------DTFSDNDVQINTL 131

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            DP+ G GGF +                             +     A  +I   +    
Sbjct: 132 LDPSAGMGGFSSAF---------------------------SFRYLKAD-IINFEKDLLT 163

Query: 270 RDLSKNIQQGSTLSKDLFT------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             +  +I     +  D F          F    SN PFG+    D + ++ +  + +  R
Sbjct: 164 GKILSHINPDDKVIVDGFETIESRYNNHFDVVTSNIPFGEMSVFDAEFMKTDKLHRDSTR 223

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                      +  FL     K       GG  A + S   L +         +R+WL+ 
Sbjct: 224 AIH--------NYFFL-----KGVETLREGGLMAFITSQGVLNSPNNQ----AVRQWLMN 266

Query: 384 NDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           N  + + + LP +LF     T + + L +L   
Sbjct: 267 NTNLVSAIRLPNNLFVENAGTEVGSDLIVLQKN 299


>gi|293363456|ref|ZP_06610213.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
 gi|292552976|gb|EFF41729.1| conserved domain protein [Mycoplasma alligatoris A21JP2]
          Length = 102

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%)

Query: 1  MTEFTGSAA-SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK- 58
          M          +   IW  AE+L G     DF + +L     R +   +    + +  K 
Sbjct: 1  MNNKKELEQAEIHKTIWAIAEELRGTVDGWDFKQYVLGLLFYRFISENISSYINKIENKN 60

Query: 59 ------YLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
                +      + +      ++   FY    +    
Sbjct: 61 GNTTFDFATTKDKDFESAKETLISEKGFYIKPSHLFKN 98


>gi|309803934|ref|ZP_07698018.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d]
 gi|309809543|ref|ZP_07703401.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308164029|gb|EFO66292.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d]
 gi|308170215|gb|EFO72250.1| conserved hypothetical protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 333

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F++ +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|312875124|ref|ZP_07735139.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|325911894|ref|ZP_08174298.1| N-6 DNA Methylase [Lactobacillus iners UPII 143-D]
 gi|311089330|gb|EFQ47759.1| N-6 DNA Methylase [Lactobacillus iners LEAF 2053A-b]
 gi|325476400|gb|EGC79562.1| N-6 DNA Methylase [Lactobacillus iners UPII 143-D]
          Length = 333

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F++ +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLSVDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N     +  KV 
Sbjct: 289 KSILVLQNHGQNMQLRKVL 307


>gi|256962633|ref|ZP_05566804.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
 gi|256953129|gb|EEU69761.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
          Length = 252

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157
              +F+   F       E+   LYK               + F+ +    +     ++  
Sbjct: 37  ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEETTTDILGE 89

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L        ++ A  F TP +V  L   +  +  D   K    +I   YDP  G G
Sbjct: 90  LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVI--FYDPCIGGG 142

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             L    N + + G +      L     +++    ++      +  +++   R  +
Sbjct: 143 VTLIALANIMREKGYN--YQRSLRALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 196


>gi|219856139|ref|YP_002473261.1| hypothetical protein CKR_2796 [Clostridium kluyveri NBRC 12016]
 gi|219569863|dbj|BAH07847.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 599

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 128/402 (31%), Gaps = 72/402 (17%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDF-SSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
           N   N +  +  F ++ K I   ++F  + I + EK  ++    + F+  E         
Sbjct: 4   NLHKNGDKSVNDFIESIKKI---YNFMETPIPKEEKLEIIKNFKQQFNISEK-------- 52

Query: 154 VMSNIYEHLIRRFGS--EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                 E+  +++     +++ A    T R++ +     L++  D            + D
Sbjct: 53  ------EYFSQKYYELVSINKRAGIVYTQRELSYFMIKNLIEEKD----VIYNPFVKIVD 102

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPR 269
           P CG G  L+    ++      +      V +   +     +H VC     +   + D  
Sbjct: 103 PACGCGNILSVCFFYLRHIFIKNIEVINNVNNINLKLENINSHIVCN---NLFGFDIDEI 159

Query: 270 RDLSKNI---------QQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                NI         Q+ + + KD       K+F   + NPP+    +  +    +  K
Sbjct: 160 ALKILNIDLFSISGEFQKENFVLKDFLIDAIEKKFDIFIGNPPY-IGHKSIEKKYSETLK 218

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 +       SD    F       LE      G+AA +          A SG  ++
Sbjct: 219 RVYKNIYKD----KSDVYYCFFEKSLKSLEKA----GKAAFITPRYFC---EACSG-KQL 266

Query: 378 RRWLLENDLIEAIVALPTDLFF------RTNIATYLWILSNRKTEERRGKVQLINATDLW 431
           R +L  N  I  IV      F+         +   +    N+K    + ++   + ++  
Sbjct: 267 REFLSTNTTIYKIVD-----FYGIRPFKGVGVDPIIIFFRNKKGLNNKIEIIKPDKSE-- 319

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
              +    K        + +I   Y      + S   +   F
Sbjct: 320 ---KKGRNKFYDSLFLNKDKI--RYKKFFIPQSSIDDNGWVF 356


>gi|193216909|ref|YP_002000151.1| methyltransferase, HsdM related [Mycoplasma arthritidis 158L3-1]
 gi|193002232|gb|ACF07447.1| methyltransferase, HsdM related [Mycoplasma arthritidis 158L3-1]
          Length = 517

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 20/178 (11%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             +L  I             +    +  +YE  +        +    + TP+DV  +   
Sbjct: 33  NKILEFITDKTIEELSFNKLLSFHNLGELYEIGLAHSNKIAKKDMGKYYTPQDVSRVMAE 92

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HHKIPPILVPHGQ 245
           LLL+ +          I ++ D  CGTG  + + ++ +            +   L  + +
Sbjct: 93  LLLENE----------ITSIADVGCGTGNLIIEVLDMMKAIKGVDPIDFILKGKLYLYDE 142

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           +       +    +L+R          S N+  G        +       ++NPP+  
Sbjct: 143 DKLALKICLKKIDVLLR-----ANVSSSINVILGD-FLNKKISLPAGVSVITNPPYSV 194


>gi|108563078|ref|YP_627394.1| hypothetical protein HPAG1_0653 [Helicobacter pylori HPAG1]
 gi|107836851|gb|ABF84720.1| hypothetical protein HPAG1_0653 [Helicobacter pylori HPAG1]
          Length = 1389

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 66/486 (13%), Positives = 140/486 (28%), Gaps = 91/486 (18%)

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             +N+++ IA   D                 L+    LY+  K  +       +  +  + 
Sbjct: 581  GDNIKNPIAKALDKMVEKLSTLGLEGETKDLKN---LYESVKTEAAHAKSQKSQQEL-IK 636

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
            N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 637  NLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTG 696

Query: 216  TGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            TG F+    +  +        K          ++   ++ + +  +       D      
Sbjct: 697  TGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 756

Query: 274  KNIQQGSTLS-----------------------KDLFTGKRFHYCLSNPPFGKKWEKD-- 308
            KNI    +L                        KD    +     + NPP+    + +  
Sbjct: 757  KNIALTDSLDYLEEKTNKGVLPLYEDLKENKDIKDTLADQNIRVIIGNPPYSAGAKSEND 816

Query: 309  ----------KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
                      +  V + +      R      + +      L+             G    
Sbjct: 817  NNQNLTHPKLQKWVYETYGKNSTSRNVGQTTRDT------LIQSIRMASDVVKDKGVIGF 870

Query: 359  VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
            V++ S + +  A       R+ + ++                    ++L++L+ R  +  
Sbjct: 871  VVNGSFIDSKSADG----FRKCVAKD-------------------FSHLYVLNLRGNQRT 907

Query: 419  RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
             G+V            + EG K  I +   R  I  ++      K S + +   F Y   
Sbjct: 908  SGEV-----------SKKEGGK--IFDSGSRATIAIVF----FVKDSSVPNNTIFYYE-- 948

Query: 479  KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
             V   L+    L+          + + K++P  +  W++  +    ++ P    +    +
Sbjct: 949  -VEDYLKREAKLNLLAGFENLDLVPFEKITPNDKGDWINQREDAFDKLIPLKRDKKLQND 1007

Query: 539  SIKSNE 544
            SI    
Sbjct: 1008 SIFDLN 1013


>gi|29347736|ref|NP_811239.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339637|gb|AAO77433.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1908

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 81/246 (32%), Gaps = 46/246 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  +V+   + L +        SPG      DP+ GTG F++   +     
Sbjct: 99  ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRSQCHSA 150

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +               PE  A     +L  R+ +    +   NI+    L        
Sbjct: 151 SGN--------------TPEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F    SN PFG     D    +    NG   RF       S  +  F      K     
Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   + +  A      +R++L+    + + V LP +LF     T + + L
Sbjct: 240 REGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEVGSDL 295

Query: 408 WILSNR 413
            IL   
Sbjct: 296 IILQKD 301


>gi|189468324|ref|ZP_03017109.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM
           17393]
 gi|189436588|gb|EDV05573.1| hypothetical protein BACINT_04721 [Bacteroides intestinalis DSM
           17393]
          Length = 1908

 Score = 58.4 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 81/246 (32%), Gaps = 46/246 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  +V+   + L +        SPG      DP+ GTG F++   +     
Sbjct: 99  ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRSQCHSA 150

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +               PE  A     +L  R+ +    +   NI+    L        
Sbjct: 151 SGN--------------TPEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F    SN PFG     D    +    NG   RF       S  +  F      K     
Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   + +  A      +R++L+    + + V LP +LF     T + + L
Sbjct: 240 REGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEVGSDL 295

Query: 408 WILSNR 413
            IL   
Sbjct: 296 IILQKD 301


>gi|260576736|ref|ZP_05844722.1| N-6 DNA methylase [Rhodobacter sp. SW2]
 gi|259021103|gb|EEW24413.1| N-6 DNA methylase [Rhodobacter sp. SW2]
          Length = 1032

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 49/281 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y+  +          +  + TP          ++     +  ++        DP CG+G
Sbjct: 307 VYDRFLGE-REAERRASGAYYTP----MFLADTVVSQAWEMLPDATRTTGNFLDPACGSG 361

Query: 218 GFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETHAVCVAGMLIRRLESD 267
            FL  +   + +                       HG +L      V V  + +  LE  
Sbjct: 362 VFLVRSFQRLCEHWRAKHNTQTLSWKTLLSLLSQIHGWDLNGGAVRVAVFSLYVALLEEV 421

Query: 268 PRRDLSKNIQ--------QGSTL-SKDLFT----GKRFHYCLSNPPFGKKWEKDKDAVEK 314
             RD+ K I          G TL  +D F     G R+   + NPP+  +    + +V  
Sbjct: 422 SPRDIRKLITRGKLLPELWGKTLVCRDFFEVPPDGARYEVIIGNPPWTSRRGPARSSV-- 479

Query: 315 EHKNGELGRFG--PGLP-KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                   R+    G P    + +  F     + L      GG  A +L  +  F     
Sbjct: 480 --------RWSKNAGHPMPGGEDAWAFSWKALSHLAD----GGLIAFLLP-AMGFLHNHA 526

Query: 372 SGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWI 409
               E R        +  ++    L   LF + +    L I
Sbjct: 527 QKTVEARDAFFRKSRVRRVINFADLRFQLFEKAHRPAALII 567


>gi|188528143|ref|YP_001910830.1| hypothetical protein HPSH_07010 [Helicobacter pylori Shi470]
 gi|188144383|gb|ACD48800.1| hypothetical protein HPSH_07010 [Helicobacter pylori Shi470]
          Length = 1078

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRENKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   NP F  +    ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELLNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495


>gi|223938587|ref|ZP_03630478.1| N-6 DNA methylase [bacterium Ellin514]
 gi|223892706|gb|EEF59176.1| N-6 DNA methylase [bacterium Ellin514]
          Length = 540

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 86/256 (33%), Gaps = 59/256 (23%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP+ +  L    ++                + DP  G GG L +         
Sbjct: 40  KSFGQVATPQAIAELMARWVMS----------KKPEAVLDPAAGLGGLLHECRRF----- 84

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +   G E + +T               +     +K I     ++K      +
Sbjct: 85  -----DQQVSLIGVERDQQTLNQAK----------NSAPSGTKLIFADYLMTKTG----Q 125

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   ++NPP+    +  +    ++        FG  L ++++   LFL+ +   L     
Sbjct: 126 FPGIIANPPY---VKAHRLDYSEDVWRSFEQCFGTRLDRLTNLYALFLLKIWEDLAPQ-- 180

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--------DLFFRTNI 403
             GRAA++L +  L    A  GE EI++ L+E      ++  P         +LF     
Sbjct: 181 --GRAAVLLPAEFL---NANFGE-EIKQHLIE------VIRPPGIIVFEPGLNLFPDALT 228

Query: 404 ATYLWILSNRKTEERR 419
            + +  L  + ++  R
Sbjct: 229 TSAIVFLEKKHSKTSR 244


>gi|302670608|ref|YP_003830568.1| adenine-specific DNA methylase [Butyrivibrio proteoclasticus B316]
 gi|302395081|gb|ADL33986.1| adenine-specific DNA methylase [Butyrivibrio proteoclasticus B316]
          Length = 663

 Score = 58.1 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 88/264 (33%), Gaps = 39/264 (14%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
            +  +  +Y  L      +  +    + TP  VV                 +    ++  
Sbjct: 176 SEDTLGMLYLSLRG---LQAKKSTGAYYTPFFVVDELINEAFSSKA----TTDYASKSYI 228

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDP 268
           DP CGTG FL    +++          P+   HG +++     +C   + I         
Sbjct: 229 DPACGTGNFLLRLPDNI----------PLANIHGADIDKTAVILCRINIAIKYHITSWSE 278

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              L+ NI     L         ++  L NPP+G  + KD  A+ +   +   G    G 
Sbjct: 279 LEVLTNNIVCRDFLFSP--ANGYYNVTLGNPPWGYAFSKDSTALIRHTFSSFSG---TGK 333

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
           P+       F + +   L+            L    +       G   IR+++ +N  + 
Sbjct: 334 PES------FSLFIEKSLKESDE-----VTFLLPETILGSDYHLG---IRKFITDNANVV 379

Query: 389 AIVALPTDLFFRTNIATYLWILSN 412
           +I  L  ++F +    + +  +S 
Sbjct: 380 SISYL-GEVFDKVQCPSVIMRISR 402


>gi|290956126|ref|YP_003487308.1| hypothetical protein SCAB_16041 [Streptomyces scabiei 87.22]
 gi|260645652|emb|CBG68743.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1067

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 92/339 (27%), Gaps = 64/339 (18%)

Query: 133 LYKICKNFSGIELHPDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           L  + +  + ++       +     ++YEH +  +   + + +  + TP ++V     L 
Sbjct: 257 LDLLTRTIARVDWPTIRSGNRDAYLHLYEHFLTVYDPALRQQSGSYYTPHEIVEEMVRLT 316

Query: 192 LDPDDALFKESPGMI---RTLYDPTCGTGGFLTDAMNHVADC---------GSHHKIPPI 239
            D       +  G       + DP  GTG FL   +  VA+                   
Sbjct: 317 EDVLRVRLDQEAGFGSEEVKIIDPAMGTGTFLHTIIERVAEQAVADHGPAMARDAISRLA 376

Query: 240 LVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR------ 291
               G EL+    AV    A  L++R  +    D   N     TL       +       
Sbjct: 377 TRLFGFELQMGPFAVAELRASDLLKRYHAALPGDGL-NFFVTDTLDNPFVEDEYLASTYG 435

Query: 292 -----------------FHYCLSNPPFG-----------KKWEKDKDAVEKEHKNGELGR 323
                                + NPP+            K+ +  +  +    ++   GR
Sbjct: 436 ALSAFRRRANRVKRNIPVTAVVMNPPYDDKAEGRGGWVEKRAQGQEPPLLDAFRHQGNGR 495

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +   L  +      +              G    I  S      G  G G  +  R   +
Sbjct: 496 YEHVLKNMHVYFWRWATWKVFDAHPDDRHGVVCLITPSGWA--TGPGGRGMRDYLRRTCD 553

Query: 384 NDLIEAIVAL---------PTDLFFRTNIATYLWILSNR 413
                 I+ L         P  +F        + I   R
Sbjct: 554 EGW---IIDLTPEGQRSPVPNRVFPGVAQPLAIHIFVRR 589


>gi|221369899|ref|YP_002520995.1| hypothetical protein RSKD131_4062 [Rhodobacter sphaeroides KD131]
 gi|221162951|gb|ACM03922.1| Hypothetical Protein RSKD131_4062 [Rhodobacter sphaeroides KD131]
          Length = 1620

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/438 (11%), Positives = 114/438 (26%), Gaps = 63/438 (14%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNL 100
            R  +  L   R  + +         +  +  + +    + +   +++     S   +  L
Sbjct: 761  RAFDDFLAELRDDLNDTITEGDAIEMLAQHIITRPVFETLFEGHKFTAENPVSRAMQRVL 820

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                         +  + +       LEK    Y   +  +     P      ++  +Y+
Sbjct: 821  ------------DVLNEANLDKESKDLEK---FYASVRMRAHGITDPHAKQKLIV-ELYD 864

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219
               RR     +E      TP ++V      + +     F ++ G     + DP  GTG F
Sbjct: 865  KFFRRAFPRTTEKLGIVYTPVEIVDFIIHSVNEMLQEHFGQTLGSEGVHILDPFTGTGTF 924

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQ 277
            +T  +          +       H  E+    + +    +  +   +         + I 
Sbjct: 925  ITRLLQSGLIAPEEMERKFRHEIHANEIVLLAYYIAAINVEAVYHGI-MGGDYVPFEGIC 983

Query: 278  QGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
               T     S D                        + NPP+        D        G
Sbjct: 984  LTDTFQMYESDDLISHYMPDNSERRKRQKASDIRVIVGNPPYSVGQATANDDNANVIYPG 1043

Query: 320  ELGR-FGPGLPKISDGSM--LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
               R       + ++ +M  L+  ++             G  A V ++  +    A    
Sbjct: 1044 LDARIRSTYAARSANTNMRSLYDSYIRAIRWASDRIGDAGIVAFVTNAGWVDGNAADG-- 1101

Query: 375  SEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERR 419
              +R  L E      +  L  +              +F   +     + +          
Sbjct: 1102 --MRACLAEEFTDLYVFHLRGNQRTSGEKSRKEGGKIFGSGSRAPISISVFVKNPKATEI 1159

Query: 420  GKVQLINATDLWTSIRNE 437
            G++   +  D     +  
Sbjct: 1160 GRIFFHDIGDYLDQKQKL 1177


>gi|256964526|ref|ZP_05568697.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
 gi|256955022|gb|EEU71654.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis HIP11704]
          Length = 252

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 57/176 (32%), Gaps = 29/176 (16%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKIC-------------KNFSGIELHPDTVPDRVMSN 157
              +F+   F       E+   LYK               + F+ +    +     ++  
Sbjct: 37  ISNVFDKVHF-------EEREKLYKSIQEKYTEEEQEKFHELFALLVEALEENSTDILGE 89

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y  L        ++ A  F TP +V  L   +  +  D   K    ++   YDP  G G
Sbjct: 90  LYMAL-----EIANKDAGQFFTPYNVARLMAEMNFNEKDEQLKNGQPVV--FYDPCIGGG 142

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             L    N + + G +      L     +++    ++      +  +++   R  +
Sbjct: 143 VTLIALANIMREKGYN--YQRSLKALCGDIDGNVLSMAYVQCSLLGIDAIFERKNA 196


>gi|312871486|ref|ZP_07731580.1| N-6 DNA Methylase [Lactobacillus iners LEAF 3008A-a]
 gi|311093006|gb|EFQ51356.1| N-6 DNA Methylase [Lactobacillus iners LEAF 3008A-a]
          Length = 333

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F+  +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|315586042|gb|ADU40423.1| probable adenine specific DNA methyltransferase [Helicobacter
           pylori 35A]
          Length = 842

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 172 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 229

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 230 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSIIKDLNDD 289

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 290 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 349

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 350 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 409

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y    P F K+    ++
Sbjct: 410 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SETIAYRGLQPIFEKELLNAQE 466

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 467 IKKDENILIITGNPPYSGASSNEGFFEW 494


>gi|148550647|ref|YP_001260086.1| hypothetical protein Swit_5209 [Sphingomonas wittichii RW1]
 gi|148503066|gb|ABQ71319.1| conserved hypothetical protein [Sphingomonas wittichii RW1]
          Length = 267

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 16/146 (10%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F  I +  +  P  V+ +I+  L        ++    F TP  V  +   + L       
Sbjct: 74  FGEITMALEEAPGDVLGSIFTAL-----EIHNKNRGQFFTPYPVCQMMAQVTLGDAKDAL 128

Query: 200 KESPGMIR-TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                    +  +P CG G  +      +        I      H   ++ +  AV +  
Sbjct: 129 ALIDDKGFVSAMEPACGAGAMVIALAEAMRA----AGINYQRHLHVTAIDIDQRAVHM-- 182

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK 284
                        +  ++  G++LS 
Sbjct: 183 ----GYIQFSLLHIPAHVIVGNSLSN 204


>gi|325913066|ref|ZP_08175437.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
 gi|325477622|gb|EGC80763.1| N-6 DNA Methylase [Lactobacillus iners UPII 60-B]
          Length = 333

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F++ +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPVDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N     R  KV 
Sbjct: 289 KSILVLQNHGQNMRLRKVL 307


>gi|167768842|ref|ZP_02440895.1| hypothetical protein ANACOL_00159 [Anaerotruncus colihominis DSM
           17241]
 gi|167669014|gb|EDS13144.1| hypothetical protein ANACOL_00159 [Anaerotruncus colihominis DSM
           17241]
          Length = 287

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 17/150 (11%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           + +  + +E +PD      +  ++  L        +E A  F TP  V     A +   +
Sbjct: 79  LAEVVADLEHNPDQ---DFLGELFMAL-----DLGNEWAGQFFTPYSVCRAMAA-VSYGE 129

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
           D   K       ++ DP CG G  L    N     G+       ++   Q+++     +C
Sbjct: 130 DLKAKIETHGWASVNDPACGAGALLVAFANECRRPGNDVNYQTSVLFVAQDIDFLAGCMC 189

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              + +              I  G T++  
Sbjct: 190 YIQLSLMGCPGY--------IVIGDTIAHP 211


>gi|332884167|gb|EGK04435.1| hypothetical protein HMPREF9456_00762 [Dysgonomonas mossii DSM
           22836]
          Length = 1864

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 89/273 (32%), Gaps = 56/273 (20%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F S  +     F TP +VV               K++   +    DP+ G G F    
Sbjct: 92  QYFNSIKNSVLTAFYTPPEVVQTIA--------GTLKDAGIEVNRFLDPSAGMGEFPKAF 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVC-VAGMLIRRLESDPRRDLSKNIQQGSTL 282
                                     +T   C    +L  +L S  + +    I+   T+
Sbjct: 144 S-----------------------NDDTEKFCFEKDLLTGKLLSHLQPEDKVKIEGFETI 180

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                    F    SN PFG     D   ++++  + +  R           +  F+   
Sbjct: 181 ESRY--NNYFDVVSSNIPFGDMSVFDASFMKQDALHRDSTRAIH--------NYFFV--- 227

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF--- 399
             K       GG  A + S   + +         +R+WL+EN  + + + LP +LF    
Sbjct: 228 --KGVESLREGGIMAFITSQGVMNSPNNEP----VRKWLMENTNLVSAIRLPNNLFTDYA 281

Query: 400 RTNIATYLWILSNR--KTEERRGKVQLINATDL 430
            T + + L +L     K E   G+   + +T L
Sbjct: 282 GTEVGSDLILLQKNTAKEELNFGEKLFVRSTPL 314


>gi|52550522|gb|AAU84371.1| BpmI endonuclease-methyltransferase fusion protein type IIG
           [uncultured archaeon GZfos9D8]
          Length = 957

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 118/399 (29%), Gaps = 112/399 (28%)

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR---- 165
            IF+ F      + L     +L  I +   +         +   ++ N+YE  + +    
Sbjct: 280 GIFD-FGADKITSTLIIDDRVLKTIIQSLYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 338

Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG--MIRTLYDPTC 214
                       EV +    + TP+ +V       +       +++P       + DP C
Sbjct: 339 TAGHQAKVETKPEVKKAGGVYYTPQYIVDYIVKNTVGKLVEGKEKTPEEIAGIKILDPAC 398

Query: 215 GTGGFLTDAMNHVADCG----------------------------SHHKIPPILVPHGQE 246
           G+G FL  A  ++                                +  K   +    G +
Sbjct: 399 GSGSFLIGAYTYLLRYHLDWYTSNEPKKHKEAVFQVRENEWYLTTAEKKRILLNNIFGVD 458

Query: 247 LEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLSKDLFTGK- 290
           ++P+   V    +L++ LE++                  +L  NI+ G++L    F G  
Sbjct: 459 IDPQAVEVTKLSLLLKVLENESRESIDQQVKLGLEGVLPNLEGNIRCGNSLIGPDFYGAG 518

Query: 291 ---------------------------------RFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                                             F   + NPP+G      +     ++ 
Sbjct: 519 QQETLFDEVEMRRVNVFDWDDDVKGFGKIMKHGGFDCVIGNPPYGALITSAE----IKYL 574

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           NG+       L    D  +LF+      LE     G    I  ++  L          +I
Sbjct: 575 NGKFNLQQYSL----DTYLLFVEKALTLLEDYTLLGM---IFPNTWLL-----NLTMDKI 622

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE 416
           R ++     +E IV     +F +  + T + I      +
Sbjct: 623 RNYIFHETQVEEIVHYRHPVFPKATVDTEIVIFRKGSPK 661


>gi|261838916|gb|ACX98681.1| hypothetical protein HPKB_0048 [Helicobacter pylori 52]
          Length = 1168

 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 102/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +        L+ L     
Sbjct: 173 RYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--IYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKRLDGIKEIQWLLNEILSSINHVDMDSILKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y    P F  + +  ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SETIAYRGLQPIFETELKSAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
               E+     G         ++G   +
Sbjct: 468 IKRDENILIITGNPPYSGASSNEGLFEW 495


>gi|257054590|ref|YP_003132422.1| hypothetical protein Svir_05210 [Saccharomonospora viridis DSM
           43017]
 gi|256584462|gb|ACU95595.1| hypothetical protein Svir_05210 [Saccharomonospora viridis DSM
           43017]
          Length = 1209

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 81/289 (28%), Gaps = 67/289 (23%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +        R + ++Y+ L         +      TP  V      L L+P    F   
Sbjct: 174 YDFTDPEWDTRFLGDLYQDL----SEHARKTYALLQTPEFVEEFILDLTLEPAVEEFGL- 228

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHA 253
                   DP CG+G FL      +       +                HG +  P   +
Sbjct: 229 --ADLRTIDPACGSGHFLLGLFRRILTKWREVEPGTDQWELIQRTLASVHGCDKNPFAVS 286

Query: 254 VCVAGMLI------RRLESDPRRDLSKNIQQGSTL------------------------- 282
           +    ML+        +  D       NI  G +L                         
Sbjct: 287 IARFRMLVAVLREANAMRLDQAPQFPINIAVGDSLMHGRGAPGIQGELFALDEPHTYTTE 346

Query: 283 -------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                  S DL     +H  + NPP+    +K ++   ++  +   G +   +P      
Sbjct: 347 DVNEYVRSCDLLGKGSYHVVVGNPPYITVKDKQENKNYRDRYDACSGTYALSVP---FAQ 403

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
            LF + +  + +      G    + ++S +          E  + L+E 
Sbjct: 404 RLFQLAI--RRDGSERDAGYVGQITANSFMKR--------EFGKKLIEQ 442


>gi|308274109|emb|CBX30708.1| Type IIS restriction enzyme Eco57I [uncultured Desulfobacterium
           sp.]
          Length = 995

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/437 (13%), Positives = 116/437 (26%), Gaps = 95/437 (21%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF------ 140
              TL      N+ ++ I  F        +    S    +L K  ++  I   F      
Sbjct: 246 DYQTLLKFANSNDFKALIKKFEQA-----DKRYNSGLFNQLLKDKIVENISSVFWTIIKQ 300

Query: 141 ---SGIELHPDTVPDRVMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHL 186
                           V+ +IYE  +                  +   +   TP  ++  
Sbjct: 301 LYYPESPYSFSVFSSDVLGSIYEIFLSEKLTVQSVSVILVKKPENVDRDIITTPTFIISD 360

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
                +        +   +     D +CG+G FL +    + D    H +        Q 
Sbjct: 361 ILRNTVLKKCEGKSDKEILKLKFADISCGSGAFLLELFQLLNDILIDHYLKNDKTKLIQT 420

Query: 247 LEPET---HAVCVAGML--IRRLESDPRRDLSK--------------------------- 274
                     +    +L  I  ++ D     +                            
Sbjct: 421 NINTFKLPFEIKRQLLLNCIYGVDKDYNAVEAAKFGLLLKLLEGEDVNSTNKTKPVLPDL 480

Query: 275 --NIQQGSTLSKDL---------------FTGKRFHYCLSNPPF--GKKWEKDKDAVEKE 315
             NI  G++L                   F+  RF   + NPP+   +  +         
Sbjct: 481 SQNIFFGNSLLNPKQVTNKKDQVIINPFDFSKLRFDVIVGNPPYMKSEDMKNITPLELPL 540

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
           +K      +        D   LFL    N L+      G    ++ S     G       
Sbjct: 541 YKTNFDSAYKQF-----DKYFLFLEQGINLLDDD----GILGYIVPSKFTKVGAG----K 587

Query: 376 EIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKV----QLINATDL 430
           ++R  L + + + +IV+   + +F      T L IL+  K ++                 
Sbjct: 588 KLRELLADKEYLHSIVSFGANQVFTDKTTYTCLLILNK-KPQKTFQYAEVRSLKSWKVRE 646

Query: 431 WTSIRNEGKKRRIINDD 447
             + +   KK   ++ +
Sbjct: 647 PEAAKYGSKKTNELDSE 663


>gi|296161826|ref|ZP_06844628.1| N-6 DNA methylase [Burkholderia sp. Ch1-1]
 gi|295887990|gb|EFG67806.1| N-6 DNA methylase [Burkholderia sp. Ch1-1]
          Length = 72

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRL 44
          +W  A+ L  +    ++ +++L    L+ +
Sbjct: 10 LWATADKLRANMGAAEYKRIVLGLIFLKYI 39


>gi|157829188|ref|YP_001495430.1| hypothetical protein A1G_07415 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801669|gb|ABV76922.1| hypothetical protein A1G_07415 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 152

 Score = 57.7 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            PF +   +K     +   +N     F  G+   ++G    ++H    L+     GGR A
Sbjct: 1   MPFSQAITKKTSKNGKIITENHITSLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
           +V+    LF     +      ++LL    ++ +++LP   F   T + T +   +     
Sbjct: 56  LVVPEGFLFRKDTSAVH----QFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFTMHINR 111

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             +  +  +        + N+ +K   IND  RR
Sbjct: 112 IIKKNIGFMRLRISALRLDNKKRKIVGINDLNRR 145


>gi|290580595|ref|YP_003484987.1| restriction-modification system LlaBIII [Streptococcus mutans NN2025]
 gi|254997494|dbj|BAH88095.1| restriction-modification system LlaBIII [Streptococcus mutans NN2025]
          Length = 1564

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/469 (13%), Positives = 133/469 (28%), Gaps = 80/469 (17%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
            +  +  L   +  + E         +  +  +       ++      S +        +E
Sbjct: 732  KAFDKFLSSLQHNINESIDEKQAIEMLSQHLIT---LPIFDALFEDYSFIKHNPVSQAME 788

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLE---KAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
              I  FS         + F      L+   ++  L       SGI+         ++  +
Sbjct: 789  KIIEEFSQ--------YGFEKEQRELQPFYESVRLRA-----SGIDNAQAKQK--IIVTL 833

Query: 159  YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTG 217
            Y+   +      +E      TP +VV      + +       K        + DP  GTG
Sbjct: 834  YDKFFQTGFKSTTERLGIVFTPVEVVDFIVRSVDVVLRKHFGKTLASENVHILDPFTGTG 893

Query: 218  GFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGM--LIRRLESDP 268
             F+T  ++++ +     +              H  E+   ++ +    +  +   +  D 
Sbjct: 894  TFITRTLHYLKELMDKGEITYADILRNYTQELHANEIVLLSYYIAAINIEAVFDEINGDE 953

Query: 269  RRDLSKNIQQGSTL----SKDLFTG---------------KRFHYCLSNPPFGKKWEKDK 309
                 K I    T     S+D                   K     + NPP+  K   + 
Sbjct: 954  GYQPFKGIVLTDTFESTESEDTLDDSFFETNDKRLKRQQEKTITVIMGNPPYSAKQNNED 1013

Query: 310  DAVEKEHKNGELG---RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSP 364
            D   +           R        ++ + L   ++             G  A + +SS 
Sbjct: 1014 DNTNRNEYLKLDSNIRRKWIETSSATNKNGLLDSYIRALRWSIDRLEKDGVVAFITNSSF 1073

Query: 365  LFNGRAGSG-----------------ESEIRRWLLENDLIEAIVALPTDLF-FRTNIATY 406
            + +G A  G                 + +IRR       +E       ++F   T +A  
Sbjct: 1074 I-DGVAMDGLRASLEEEIDYIYLVDLKGQIRRRSKAQAKVEG-----GNIFDIMTGVAIT 1127

Query: 407  LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
            + +     +   +GK++  N  D  T      +   + +        +I
Sbjct: 1128 ILV-KKGDSNLTKGKIKYFNIGDFLTKKEKLTRLSNLTSIQSIHNFTEI 1175


>gi|331269201|ref|YP_004395693.1| type IIS restriction enzyme R and M protein [Clostridium botulinum
           BKT015925]
 gi|329125751|gb|AEB75696.1| type IIS restriction enzyme R and M protein, putative [Clostridium
           botulinum BKT015925]
          Length = 589

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 114/379 (30%), Gaps = 67/379 (17%)

Query: 127 LEKAGLLYKIC----KNFSGIELHPDTVPDRVMS-----NIYEHLIRRFGSEVSEGAEDF 177
           L+K   LY I                      +      + Y  L  +   +  +     
Sbjct: 5   LDKLNELYNIINTPIDRIFKTMAIDKYKKVLNIGKEKFSDTYMDLKEK---QKIKENGVV 61

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--- 234
            TP+++ +     ++  +D            + DP+CG G  +      + +    +   
Sbjct: 62  YTPKEIANYIVDNVIFKED----IINNPYIKILDPSCGCGDIIIVCYEKLKNIYEENLEF 117

Query: 235 ---------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                          K       +G +++     +    +               N ++ 
Sbjct: 118 INEVNRINLRKEDISKHIVKNNLYGFDIDEIALKILAIDLF-----EVSGCFYENNFKKQ 172

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             L +     ++F+  + NPP+         +++KE+       F        D S  F 
Sbjct: 173 DFLLE--KFSEKFNIIVGNPPY-----VGHKSIDKEYAKKLKVNFKEIYKDKGDISYCFF 225

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
               N L       GR + + S   +    + SGE E+R+ L E   +  IV      F+
Sbjct: 226 QQAINNLSKK----GRLSFITSRYFI---ESPSGE-ELRKILKEVCSLYKIVD-----FY 272

Query: 400 R------TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
                    +   +  L+N   +  + ++Q+I    +     +   K   +   +  +  
Sbjct: 273 GIRPFKRIGVDPVIIFLTN--EQNIQEEIQVIKPQKVSKKEESNFYKSLFLKQGECYKSF 330

Query: 454 DIYVSRENGKFSRMLDYRT 472
            I  +  N K   + D + 
Sbjct: 331 YINKNYLNNKGWILRDKKE 349


>gi|153938955|ref|YP_001392368.1| modification methylase family protein [Clostridium botulinum F str.
           Langeland]
 gi|152934851|gb|ABS40349.1| modification methylase family protein [Clostridium botulinum F str.
           Langeland]
 gi|295320359|gb|ADG00737.1| modification methylase family protein [Clostridium botulinum F str.
           230613]
          Length = 577

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 103/333 (30%), Gaps = 67/333 (20%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y  LI+
Sbjct: 2   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYELIK 52

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 53  -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103

Query: 225 NHVADCGSHH------------------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            ++ +    +                  K       +G +++     + +  +       
Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILMMDLF-----Y 158

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   N ++   L +D+     F   + NPP+         +V+KE+     G++G 
Sbjct: 159 LTGYYNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKGKYGY 211

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                 D S  F ++  N      N   +   + S   + +         +R++L EN  
Sbjct: 212 VYKDKGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCN 263

Query: 387 IEAIVALPTDLFFR------TNIATYLWILSNR 413
           I  I+      F+         I   +  +   
Sbjct: 264 IYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291


>gi|328952619|ref|YP_004369953.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452943|gb|AEB08772.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 1174

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 82/288 (28%), Gaps = 72/288 (25%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L K+  +F+  +     +P  V+ N++E LI     E   G   + T  ++     A  +
Sbjct: 305 LAKLIGDFNTRDF--AHLPQDVVGNVFERLI---PPEERHGLGQYFTSENLCDFIAAFCI 359

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
                          T+ DP+CGTG FL  A + +   G H     +    G ++ P   
Sbjct: 360 R----------SPHDTVLDPSCGTGTFLIRAYDRLRWLGRHDHTKLLSQIWGVDIGPFPA 409

Query: 253 AVCVAGMLI-----RRLESDPRRDLSKNIQQGSTLSKDLFTGK------------RFHYC 295
            +    +                     I  G                       +F   
Sbjct: 410 ELATINLFRQRISEHGNFPRIICQDFFRITPGECFPFPPPKMDLDNPQTIEEPFPQFEAI 469

Query: 296 LSNPPF--------------------------------------GKKWEKDKDAVEKEHK 317
           + N P+                                        + + ++D  E  HK
Sbjct: 470 IGNFPYVSADRIEKYEAGYLDFIRRRLLNGWFEDYPQLFCHKNQNAQIKFERDIAENRHK 529

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +  + G  +   +   +   ++L          GGR  IV S++ L
Sbjct: 530 RNDYQKNGLQIHISTYADL--YVYLFFHAARFLKPGGRMGIVTSNAWL 575


>gi|255692111|ref|ZP_05415786.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
 gi|260622210|gb|EEX45081.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
          Length = 1908

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 80/246 (32%), Gaps = 46/246 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  +V+   + L +        SPG      DP+ GTG F++         
Sbjct: 99  ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSAFRPQCHSA 150

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             +               PE  A     +L  R+ +    +   NI+    L        
Sbjct: 151 SGN--------------TPEIVAYEK-DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F    SN PFG     D    +    NG   RF       S  +  F      K     
Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   + +  A      +R++L+    + + V LP +LF     T + + L
Sbjct: 240 REGGVLAFITSQGVMNSAMA----YPVRQYLMNRSRLLSAVRLPNNLFTDYAGTEVGSDL 295

Query: 408 WILSNR 413
            IL   
Sbjct: 296 IILQKD 301


>gi|170022327|ref|YP_001718832.1| N4/N6-methyltransferase family protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169748861|gb|ACA66379.1| N4/N6-methyltransferase family protein [Yersinia pseudotuberculosis
           YPIII]
          Length = 255

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 59/216 (27%), Gaps = 48/216 (22%)

Query: 13  NFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK-------------- 58
           N  WK  + L  D    ++  +I    L + +  A E ++  +                 
Sbjct: 14  NKFWKTTDKLRADIDIANYNNLIFGLILPKNISNAFEISQKELTTLFCEIKNPDEICAIS 73

Query: 59  YLAFGGSNIDLESFVK--------VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
           +  +  +  D ++  +        +    F+           +      + + +   +  
Sbjct: 74  HEDYEPNEDDTQAIQEELIVEDHYIEKNIFWMPKAARWDIRKNKAI-PQIGTALWVNTAT 132

Query: 111 AKAI---------------FEDFD------FSSTIARLEKAGLLYKICKNFSGIELHPDT 149
            + +                E  +      F+          +L  +    S I  +   
Sbjct: 133 EQGVKLRSASWLGNSPLDEIEKTNTKLKSSFNHISQYRVGNKVLTTLINAVSDINFNNPE 192

Query: 150 VPDR----VMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
             +     +   +YE+ + +F  +  +      TP+
Sbjct: 193 YNNLKSKGIYGYVYEYFLNQFAFDEEKQGGQCYTPK 228


>gi|260575999|ref|ZP_05843993.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
 gi|259021698|gb|EEW25000.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
          Length = 1629

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 59/437 (13%), Positives = 116/437 (26%), Gaps = 62/437 (14%)

Query: 42   RRLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNL 100
            R  +  L   R  + +         +  +  + +    + +   +++     S   +  L
Sbjct: 763  RAFDAFLGELRDDLNDTISEGDAIEMLAQHIITRPVFETLFEGHKFTAENPVSRAMQRVL 822

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
                         +  + +       LEK    Y   K  S     P      ++  +Y+
Sbjct: 823  ------------DVLNEANLDKESRDLEK---FYASVKLRSQGITDPQAKQKLIV-ELYD 866

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219
               RR     +E      TP ++V      + +   + F ++ G     + DP  GTG F
Sbjct: 867  KFFRRAFPRTTEKLGIVYTPVEIVDFIIHSVNEVLQSEFGQTLGSPGVHIIDPFTGTGTF 926

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQ 277
            +T  +          +       H  E+    + +    +  +   L+        + I 
Sbjct: 927  ITRLLQSGLIAPEEMEHKFRHEIHANEIVLLAYYIAAINIEAVYHGLQG-GEYVPFEGIC 985

Query: 278  QGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
               T     S D                        + NPP+      D D        G
Sbjct: 986  LTDTFQMYESDDLISHYMPDNSERRKRQKATDIRVIIGNPPYSAGQGSDNDEAANVRYTG 1045

Query: 320  ELGRFGPGLPKISDGS----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
               R        S G+        +             G  A V ++  +  G+A  G  
Sbjct: 1046 LDNRIQQTYAARSTGNPRSLYDSYIRAIRWASDRIGSEGVLAYVTNAGWV-EGKAADG-- 1102

Query: 376  EIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRG 420
             +R  L E      I  L  +              +F   +     + +    +    RG
Sbjct: 1103 -LRACLAEEFTDLYIFHLRGNQRTSGEQSRREGGKIFGSGSRAPIAISVFVKSEKRAERG 1161

Query: 421  KVQLINATDLWTSIRNE 437
             +   +  D     +  
Sbjct: 1162 NIYFHDIGDYLDQKQKL 1178


>gi|282895624|ref|ZP_06303749.1| Putative Adenine specific DNA methyltransferase [Raphidiopsis
           brookii D9]
 gi|281199318|gb|EFA74183.1| Putative Adenine specific DNA methyltransferase [Raphidiopsis
           brookii D9]
          Length = 1010

 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 62/211 (29%), Gaps = 23/211 (10%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +       + ++   YE  +  +  ++ E    + TP  VV      +       F +  
Sbjct: 263 DFDMKMNREDIVIRFYEDFLATYKPQMRERRGVYYTPEPVVSYMVRSVDILVKEKFNKPL 322

Query: 204 G---MIRTLYDPTCGTGGFLTDAMNHV-----------------ADCGSHHKIPPILVPH 243
           G      T+ DP CGTG FL      +                      + K   +    
Sbjct: 323 GLADPTVTILDPACGTGTFLLYIFQLIYQRFQESPAALTEGLVDKSWSGYVKERLLPRIF 382

Query: 244 GQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
           G EL    +A+C    G+ +         +    I   +TL       +     L N P 
Sbjct: 383 GFELLMSPYAICHLKLGLFLEETGYQFDNNQRLGIYLINTLEDIKLREETQQLSL-NIPQ 441

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
            ++   ++       K  E      G P  S
Sbjct: 442 MEQLIAEEAKAGARIKKQEPIMVVIGNPPYS 472


>gi|94992648|ref|YP_600747.1| superfamily II DNA/RNA helicase [Streptococcus pyogenes MGAS2096]
 gi|94546156|gb|ABF36203.1| Superfamily II DNA and RNA helicase [Streptococcus pyogenes MGAS2096]
          Length = 2416

 Score = 57.3 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 103/359 (28%), Gaps = 70/359 (19%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYE 160
              F +N  AI    + +  + +A  E+  +L K       S      +         +YE
Sbjct: 1131 EKFRNNIAAIQTLHELEIENRLATPEEQEILSKYVGWGGLSQAFDENNAAWADEFIELYE 1190

Query: 161  HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +L    + + +      F TP  V+     +L            G    + +P+CGTG F
Sbjct: 1191 NLSPEEYRAAMESTLTAFYTPPVVIKAMYEVL-----DRLGYEKG---NMLEPSCGTGNF 1242

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                       G   +       +G EL+  T  +              +      I   
Sbjct: 1243 F----------GLIPEKMAGSKLYGVELDDLTGRIAK------------QLYQKATIAVQ 1280

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                        F   L N PFG     D    +++    +                 F 
Sbjct: 1281 -GFEDTKLPDDHFDVVLGNVPFGDFRVNDSRYEQQKFLIHDY----------------FF 1323

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
                +K++     GG   ++ S   +          E+R+++ +   +   + LP + F 
Sbjct: 1324 AKALDKVK----AGGVVMLLTSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFK 1374

Query: 399  --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                T + + + IL        R +V  I    +       G        +    +L  
Sbjct: 1375 ANAGTEVTSDILILKK------RDRVMEIEPEWVHLDTDENGITMNRYFVEHPEMVLGT 1427


>gi|300361343|ref|ZP_07057520.1| DNA methyltransferase [Lactobacillus gasseri JV-V03]
 gi|300353962|gb|EFJ69833.1| DNA methyltransferase [Lactobacillus gasseri JV-V03]
          Length = 333

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 120/354 (33%), Gaps = 49/354 (13%)

Query: 98  NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152
            +L+  +  SFS      F+  +  +   ++E        + ++ + +  ++   D +P 
Sbjct: 16  EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRKLDY--DNLPR 71

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   I+  L  +  ++ +       TP  +  +   +         +  P   +T+ DP
Sbjct: 72  TLKVQIFTLLTLKAITQDASDYNLMPTPSVIATVIALIW-------QRIVPTGKKTVVDP 124

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             GTG  L   +  +           ++    +E         +  +       +  +  
Sbjct: 125 AIGTGNLLYSVIRQLIQENHSQNNYKLIGIDNEE--------ALLDLADIGAHLEDLKI- 175

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             ++     L  D +  ++    +S+ P G  +  D +A   E+   E   F        
Sbjct: 176 --DLYCQDAL--DPWMIEKADIVVSDVPVGY-YPLDNNAERFENHAKEGHSFAHT----- 225

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+  + N L+         A ++    LF G    G +E   WL +   I+AIV 
Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           LP D+F        + +  N      + +V +  +++     S+     K    
Sbjct: 274 LPDDMFSSQIQQKSILVFQNHGEHALKREVLVAKLDSLKKPESLVAFNMKLNDW 327


>gi|300813099|ref|ZP_07093477.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300495940|gb|EFK31084.1| N-6 DNA Methylase [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 332

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 95/318 (29%), Gaps = 43/318 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               + ++ + ++ ++             +Y  L+ +  ++    A    TP     L  
Sbjct: 50  DQKTVAELKERYAALDY--KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLA 103

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L    D L    P   + L DP  G+G  L      +A               G + +
Sbjct: 104 TVLTLFMDKLL---PKRKQVLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDND 157

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
            E   +      +  L++D              L+       +    +S+ P G      
Sbjct: 158 EEMLNLADVAAHLAGLKADF--------YCQDALTG---WPVKPDVVVSDLPIGF----- 201

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 ++      R   G    +   +LF+  +   L          A +L    +  G
Sbjct: 202 --YANDDNAKNFDLRTKEGH---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTG 251

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
             G   ++   WL     ++AIV LP+ LF        + I  N    +   +V L    
Sbjct: 252 TVG---ADFMPWLASKVYLQAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLE 308

Query: 429 DLW--TSIRNEGKKRRII 444
           +L    S+     K    
Sbjct: 309 NLKKEESLVALNIKLNEW 326


>gi|291558112|emb|CBL35229.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 667

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 107/315 (33%), Gaps = 74/315 (23%)

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  +    G    +  +  +TP  V      L     D+           ++D   G
Sbjct: 327 GKLFNEMYSWLGFTQDQLNDVVLTPSYVATFLCRLARVNKDS----------YVWDFATG 376

Query: 216 TGGFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           + G L  AMN +                           G E+    + + V  M++   
Sbjct: 377 SAGLLVAAMNEMLIDAKNTIKSPEQLAIKSANIKANQLLGLEILSNVYMLAVLNMIMMG- 435

Query: 265 ESDPRRDLSKNIQQGSTLSKDL-----FTGKRF--HYCLSNPPFGKKWEKDKDAVEKEHK 317
                 D S NI    +L+ D       T ++F     + NPP+  +             
Sbjct: 436 ------DGSSNILNKDSLNFDGNYGFEKTDEKFPADAFILNPPYSAEGNG---------- 479

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                             M+F+    + +       G AAI++ +S   +G+A S     
Sbjct: 480 ------------------MIFVEKALSMMSK-----GYAAIIIQNSAG-SGKASSYN--- 512

Query: 378 RRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            + +L++  + A + +P DLF   +++ T +++    +  ++   V+ I+ ++   +  +
Sbjct: 513 -KNILKHSTLLASIKMPIDLFIGKSSVQTNVYVFRVGEAHQKDDVVKFIDFSNDGYTRSD 571

Query: 437 EGKKRRIINDDQRRQ 451
             K  + + D  R +
Sbjct: 572 RKKASKNLFDTDRAK 586


>gi|253990773|ref|YP_003042129.1| hypothetical protein PAU_03299 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639104|emb|CAR67716.1| Hypothetical protein PA-RVA20-21-0105 [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782223|emb|CAQ85387.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 616

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 18/157 (11%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A  L ++    S + +  +      +  I+  L        ++    + TP  V H+ 
Sbjct: 443 EDAFRLSRLL---SEVIMGLEYEVGDFLGAIFMAL-----ELGNDQTGQYFTPFPVNHMM 494

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             + L    A          T+ DP CG GG +      + + G +      ++    ++
Sbjct: 495 ARMKLAEGLARLGSGEHEYITVSDPDCGAGGMIIAMYQTMLEAGFN--PQQQMLAFCVDI 552

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           +P    +    + +  + +         +  G++L+ 
Sbjct: 553 DPVAAMMTYIQLSLLGVPAV--------VTVGNSLTN 581


>gi|220908573|ref|YP_002483884.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 7425]
 gi|219865184|gb|ACL45523.1| adenine specific DNA methyltransferase [Cyanothece sp. PCC 7425]
          Length = 1125

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 6/133 (4%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
              KA+FE     + + RL+   +L    +                 + +   YE  +  
Sbjct: 281 PMIKALFEKVATPTHVRRLDLEEVLNWTGEALNRVDRESFFSKFDEGQAVQYFYEPFLEA 340

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTD 222
           F   + +    + TP +VV    A +        +   G       + DP CGTG FL +
Sbjct: 341 FDPALRKEFGVWYTPPEVVQYMVARVDKVLREELQIEDGLADPNVYILDPCCGTGAFLVE 400

Query: 223 AMNHVADCGSHHK 235
            +  +        
Sbjct: 401 VLKRIETNLQDKG 413


>gi|56550614|ref|YP_161680.1| hypothetical protein RMe0058 [Cupriavidus metallidurans CH34]
 gi|94152650|ref|YP_582052.1| hypothetical protein Rmet_6243 [Cupriavidus metallidurans CH34]
 gi|56410320|emb|CAI30202.1| hypothetical protein RMe0058 [Cupriavidus metallidurans CH34]
 gi|93359016|gb|ABF13102.1| putative Type I restriction-modification system methyltransferase
           subunit [Cupriavidus metallidurans CH34]
          Length = 297

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 12/159 (7%)

Query: 132 LLYKICKNFSGIE--LHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +   + + F  +     P+      V+   Y  L        ++ A  F TP  V  L  
Sbjct: 82  MFGALVQTFEDLVQGWVPNGDGLADVLGQTYMML-----ELGNDKAGQFFTPYPVSRLMA 136

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +    D A F +  G + TL +P CG GG +    + + D G  H     +     +++
Sbjct: 137 RM-NIGDGAPFVQRDGFV-TLSEPACGAGGMVIACADALHDAG--HNYQQTMHATCIDID 192

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           P    +    + +  + +      + +++  ST      
Sbjct: 193 PRCVHMTYVQLALLHIPAIVIHGNALSVEAWSTWFTPAH 231


>gi|283781193|ref|YP_003371948.1| type II DNA modification enzyme [Pirellula staleyi DSM 6068]
 gi|283439646|gb|ADB18088.1| putative type II DNA modification enzyme [Pirellula staleyi DSM
           6068]
          Length = 1629

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 51/233 (21%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV 150
           L S ++  +L+    +F  N + + +   F +     + +G    I        +   ++
Sbjct: 429 LFSDDSTPDLDD---AFLAN-QDLLDA--FRNLCYTEDTSGRGGSI-----RRPVDFGSL 477

Query: 151 PDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
               + ++YE L+                       +    + TP  +++      LDP 
Sbjct: 478 GSDELGSVYESLLELHPKIDTDEGPFTLGTASGNERKTTGSYYTPTSLINCLLDSALDPV 537

Query: 196 DALFKESPGMIR--------TLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPIL 240
                + P             + DP CG+G FL  A   +A                 + 
Sbjct: 538 VHAAIDVPDRAEAERKLLNLKVCDPACGSGHFLIAAAERMAMHLARLRTGDDEPNTLDVQ 597

Query: 241 V---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLS 283
                      +G ++ P    +C   + +  +E   P   L  +IQ G++L 
Sbjct: 598 HAKRDIIGRCIYGVDINPMAVELCKVALWMEAMEPGKPFSYLEHHIQCGNSLL 650


>gi|317181337|dbj|BAJ59121.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57]
          Length = 832

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   NP F  +    ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEIAAYRGLNPIFETELLNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495


>gi|309808666|ref|ZP_07702558.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
 gi|308168140|gb|EFO70266.1| N-6 DNA Methylase [Lactobacillus iners LactinV 01V1-a]
          Length = 333

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F++ +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L+      G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLKPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N     R  KV 
Sbjct: 289 KSILVLQNHGQNMRLRKVL 307


>gi|15645966|ref|NP_208146.1| putative adenine specific DNA methyltransferase [Helicobacter
           pylori 26695]
 gi|2314522|gb|AAD08396.1| putative adenine specific DNA methyltransferase [Helicobacter
           pylori 26695]
          Length = 835

 Score = 57.3 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL   +       +   +  +    +  E F      +   T    L+ L   + 
Sbjct: 176 KYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPSE 233

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +    N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 234 KINLDNVRSLIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 293

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 294 KDPYLHFYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 353

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 354 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 413

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   +P F K+    ++
Sbjct: 414 IAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP---SEIIAYRGLSPIFEKELSNAQE 470

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         + G   +
Sbjct: 471 IKKNENILIITGNPPYSGASENKGLFEW 498


>gi|18450304|ref|NP_569175.1| hypothetical protein pli0021 [Listeria innocua Clip11262]
 gi|16415805|emb|CAC42019.1| pli0021 [Listeria innocua Clip11262]
          Length = 1569

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 93/305 (30%), Gaps = 43/305 (14%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             E   F+     LE    LY+         +       +++  +Y+   +      +E  
Sbjct: 800  LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 855

Query: 175  EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232
                TP +VV      + D     F K        + DP  GTG F+   + ++ +    
Sbjct: 856  GIVFTPIEVVDFIVHSVDDVLKQHFGKSLASEGVHVLDPFTGTGTFIVRTLTYLKEQMDA 915

Query: 233  ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282
                            H  E+   ++ +    +     E +   +     + I    T  
Sbjct: 916  GEISLADITRKFTQELHANEIVLLSYYIAAINIEATFDEINGDEEGYVPFEGIVLTDTFE 975

Query: 283  ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDK-DAVEKEHKNGELG- 322
               ++D      F                  + NPP+  K + +  + +   ++  +   
Sbjct: 976  STETEDTLDDDYFGTNDERLKRQQSIPITVIMGNPPYSAKQKNEDGNQIRTTYEKLDASL 1035

Query: 323  -RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                      ++ + LF  ++          +  G    + ++S + +G A  G   +R+
Sbjct: 1036 QNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITNNSFI-DGNAMDG---MRQ 1091

Query: 380  WLLEN 384
             LLE 
Sbjct: 1092 SLLEE 1096


>gi|157826362|ref|YP_001494082.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia akari str. Hartford]
 gi|157800320|gb|ABV75574.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia akari str. Hartford]
          Length = 130

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 22/120 (18%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG- 231
               + TPR+++     L+           P    T+YD  CG GG LT+ +N++ +   
Sbjct: 12  NFGGYSTPRNIIKTIITLI----------DPKFGETVYDHFCGAGGVLTEVVNYIKENNI 61

Query: 232 ----SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  +       +G+EL   T  +     +++  +          IQQ  TL  D  
Sbjct: 62  INTEEDLEKLMFNTLYGRELTKTT-RIAKMNTVLQCYD------GHSEIQQIDTLRVDEL 114


>gi|268589806|ref|ZP_06124027.1| type I site-specific deoxyribonuclease, HsdR family [Providencia
          rettgeri DSM 1131]
 gi|291314794|gb|EFE55247.1| type I site-specific deoxyribonuclease, HsdR family [Providencia
          rettgeri DSM 1131]
          Length = 272

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 6/83 (7%)

Query: 10 SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALE------PTRSAVREKYLAFG 63
           L   IW  A D+ G     DF + +L     R +                         
Sbjct: 9  ELQRQIWAIANDVRGSVDGWDFKQYVLGTLFYRFISENFVNYITGGDESVNYAAMSDDDE 68

Query: 64 GSNIDLESFVKVAGYSFYNTSEY 86
                E  +K  GY  Y T ++
Sbjct: 69 NIKFAKEDAIKTKGYFLYPTRDW 91


>gi|307822216|ref|ZP_07652448.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum
           SV96]
 gi|307736782|gb|EFO07627.1| hypothetical protein MettuDRAFT_0293 [Methylobacter tundripaludum
           SV96]
          Length = 101

 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 18/94 (19%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
            T L+  P             T+YDP C + G LTD+ +         K    +  +G+E
Sbjct: 1   MTLLVFIPIKDPLHN----PLTIYDPACSSSGMLTDSKD-------EIKAKAGVYLYGKE 49

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           + PET+ +C + M I+  +        +NI  GS
Sbjct: 50  INPETYGICKSDMRIKGNDP-------ENILFGS 76


>gi|301163032|emb|CBW22580.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 1911

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 82/246 (33%), Gaps = 46/246 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  +V+   + L +        SPG      DP+ GTG F++         
Sbjct: 99  ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSA---FQPQF 147

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S     P +V + +             +L  R+ +    +   NI+    L        
Sbjct: 148 HSAAGNGPEIVAYEK------------DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F    SN PFG     D    +    NG   RF       S  +  F      K     
Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   + +  A      +R++L+    + + V LP +LF     T + + L
Sbjct: 240 REGGILAFITSQGVMNSAMA----YPVRQYLMNQSRLLSAVRLPNNLFTDYAGTEVGSDL 295

Query: 408 WILSNR 413
            IL   
Sbjct: 296 VILQKD 301


>gi|309750544|gb|ADO80528.1| conserved hypothetical protein p59_4 [Haemophilus influenzae R2866]
          Length = 253

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 70/190 (36%), Gaps = 20/190 (10%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               +  + + F+ I    +      + +++  L         E    + TP  + HL  
Sbjct: 60  NEDEIQALSRLFNIIVEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLMA 114

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           A+ L    +L K       TL +PTCG+G  + +A N++ +          +    ++L+
Sbjct: 115 AVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLD 170

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEK 307
                +C   M +  +  +        +  G+TL  +  +      + + N  + KK E 
Sbjct: 171 FTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLES 220

Query: 308 DKDAVEKEHK 317
                E E++
Sbjct: 221 ADSYTEAEYQ 230


>gi|326777770|ref|ZP_08237035.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
 gi|326658103|gb|EGE42949.1| N-6 DNA methylase [Streptomyces cf. griseus XylebKG-1]
          Length = 1392

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 72/243 (29%), Gaps = 62/243 (25%)

Query: 154 VMSNIYEHLIR---------RFGSEVS------EGAEDFMTPRDVVHLATALLLDP-DDA 197
            + +IYE L+          R    V+      +    + TP  ++       LDP  D 
Sbjct: 429 ELGSIYESLLELVPKHSATDRSFELVNRLGNDRKKTGSYYTPASLIETLLDSTLDPVIDD 488

Query: 198 LFKESPGMIR------------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-- 237
             K                         T+ DP CG+G FL  A   +A   +       
Sbjct: 489 AQKRGERAAAEAGEPDPRKAVIRELLSLTVCDPACGSGHFLVAAARRIAKRVAAVDENNP 548

Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGS-- 280
                              +G +L P    +    + +  LE       L  +I+ G+  
Sbjct: 549 EPPPVAVRSALHKVVARCLYGVDLNPMAVELAKVSLWLEALEPGKALGFLDAHIKHGNGL 608

Query: 281 -----TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL-PKISDG 334
                +L  D    K F     +     K+ +  +      + G+ G F   L PK+S+ 
Sbjct: 609 VGTTPSLMLDGIPNKAFKAVEGD---DDKFARFLEKRNDHERKGQRGLFDVELDPKVSNT 665

Query: 335 SML 337
              
Sbjct: 666 MFA 668


>gi|240850369|ref|YP_002971763.1| helicase/methyltransferase [Bartonella grahamii as4aup]
 gi|240267492|gb|ACS51080.1| helicase/methyltransferase [Bartonella grahamii as4aup]
          Length = 1636

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 93/319 (29%), Gaps = 37/319 (11%)

Query: 43   RLECALEPTRSAV--------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
            RL+  L   +S          +E       S  + ++   +A +     +     +L   
Sbjct: 751  RLKSILADKKSEAYRAFHAFHKELKNGLNDSIEEEDALEMLAQHL---VTRPIFESLFDG 807

Query: 95   NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            N   +  +   +     +   +  +    +  LEK    Y+  K  +   +      + +
Sbjct: 808  NEFVSKNAISQAMEKILRE-LDKMNIKEEVKDLEK---FYQSVKEDTEGIIETRAKQNLI 863

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213
            +  +YE    +   + ++      TP ++V      + D  +  F +S      ++ DP 
Sbjct: 864  I-RLYEDFFTKAFKKTTDKLGIVYTPIEIVDFILHSVNDVLEQEFGQSLSSRGVSILDPF 922

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-L 272
             GTG F+T  +          +          E+    + +    +              
Sbjct: 923  TGTGTFITRLLQSGLIKPEDMEYKFRNEIKANEIVLLAYYIAAINIESTYHSLMEGDYIP 982

Query: 273  SKNIQQGSTLS----KDLFTGKRF--------------HYCLSNPPFGKKWEKDKDAVEK 314
             + I    T      KD FT   F                 + NPP+    +   D    
Sbjct: 983  FEGICLTDTFLMLEEKDFFTRYMFENSERCKKQQEADIQVIVGNPPYSVGQKNANDNNPN 1042

Query: 315  -EHKNGELGRFGPGLPKIS 332
              +   +   +   + + S
Sbjct: 1043 VRYDTLDDSIYKQYITRSS 1061


>gi|255656742|ref|ZP_05402151.1| putative DNA modification methylase [Clostridium difficile
           QCD-23m63]
          Length = 577

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 99/283 (34%), Gaps = 43/283 (15%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P     +
Sbjct: 6   QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250
            D +CG G FL +  + + D                       H        +G +++ +
Sbjct: 59  LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHSHILNYCIYGADIDEK 118

Query: 251 THAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             ++    ++ +++ +D      K N+    +L        +F Y + NPP+    + +K
Sbjct: 119 AISILKDSLINKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +   +      +       +D    F   + + L+     GG  +++     L    
Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223

Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILS 411
                 ++R ++  N  ++ IV  L  ++F    +++ +    
Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFD 266


>gi|309389439|gb|ADO77319.1| hypothetical protein Hprae_1180 [Halanaerobium praevalens DSM
          2228]
          Length = 51

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 16/30 (53%)

Query: 15 IWKNAEDLWGDFKHTDFGKVILPFTLLRRL 44
          +WK+++ L  +    ++  V+L    L+ +
Sbjct: 12 LWKSSDKLRNNMDPAEYKHVVLGLIFLKYI 41


>gi|296452429|ref|ZP_06894130.1| modification methylase bstVI [Clostridium difficile NAP08]
 gi|296877778|ref|ZP_06901804.1| modification methylase bstVI [Clostridium difficile NAP07]
 gi|296258759|gb|EFH05653.1| modification methylase bstVI [Clostridium difficile NAP08]
 gi|296431229|gb|EFH17050.1| modification methylase bstVI [Clostridium difficile NAP07]
          Length = 577

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 99/283 (34%), Gaps = 43/283 (15%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
             + ++S  YE+ +     +  + +  + TP+ +V       L   D +    P     +
Sbjct: 6   QDNFLLSKEYENSLD---VDTKKASGIYYTPKIIVDYIVKKTLKNHDIIKNPYP----RI 58

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH-------------------HKIPPILVPHGQELEPE 250
            D +CG G FL +  + + D                       H        +G +++ +
Sbjct: 59  LDISCGCGNFLLEVYDILYDLFEENIYELKKKYDENYWTVDNIHSHILNYCIYGADIDEK 118

Query: 251 THAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             ++    ++ +++ +D      K N+    +L        +F Y + NPP+    + +K
Sbjct: 119 AISILKDSLINKKVVNDLDESDIKINLFCCDSLK--KKWRYKFDYIVGNPPYIGHKKLEK 176

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +   +      +       +D    F   + + L+     GG  +++     L    
Sbjct: 177 KYKKFLLEK-----YSEVYKDKADLYFCFYKKIIDILKQ----GGIGSVITPRYFL---- 223

Query: 370 AGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIATYLWILS 411
                 ++R ++  N  ++ IV  L  ++F    +++ +    
Sbjct: 224 ESLSGKDLREYIKSNVNVQEIVDFLGANIFKNIGVSSCILTFD 266


>gi|218440912|ref|YP_002379241.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
 gi|218173640|gb|ACK72373.1| N-6 DNA methylase [Cyanothece sp. PCC 7424]
          Length = 523

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 48/253 (18%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E  +    F TP  +       +L   D          +T+ DP  G G F     +   
Sbjct: 14  EHRKKYAQFFTPYPIADFMAQWILGNTD---------CKTILDPAFGLGVFARAIFD--- 61

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                      +   G E++           LI          L+ N+     +S+D   
Sbjct: 62  ------NTDRNINITGLEIDS----------LILSQARKLNHHLNVNLYHQDYISQDWQE 105

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKL 346
              +   + NPP+ K  + D     KE K         G+      ++  LFL+    +L
Sbjct: 106 N--YDGIICNPPYFKFHDYDNKTNLKEIKQ------KLGITLTGFTNLYTLFLLKSIYQL 157

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL--PTDLFFRTNIA 404
                  GR A ++ S  L +        +I+ +L+++  +  ++ L    ++F      
Sbjct: 158 NP----NGRIAYIVPSEFLNSDYG----KKIKDYLIKDGKLRYVIILDFAENIFTDAITT 209

Query: 405 TYLWILSNRKTEE 417
           + + + ++ K  +
Sbjct: 210 SSILLFAHDKKSQ 222


>gi|88858543|ref|ZP_01133185.1| probable site specific DNA-methyltransferase [Pseudoalteromonas
           tunicata D2]
 gi|88820160|gb|EAR29973.1| probable site specific DNA-methyltransferase [Pseudoalteromonas
           tunicata D2]
          Length = 490

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 63/217 (29%), Gaps = 43/217 (19%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 ++DP  G                   +            + E   +    +L  
Sbjct: 40  NPEGHMVFDPCVG------------------QEELLTPFIAANTKQAERFKLQSTDVLRH 81

Query: 263 RLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                       +  QG  L              + ++NPP+           + + K+ 
Sbjct: 82  ------LSVYQSHFLQGDFLLTPKAQQTKASECDFIVANPPYNCHEVDYIKQHKADLKHK 135

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                  G+    +   +FL  + +K       G   A +  SS L         S++R+
Sbjct: 136 FK---DVGV---HNMYSMFLAAMIDK----AADGCVIATICDSSFL----TAKVHSKLRK 181

Query: 380 WLLENDLIEAIVALPTDLFFRTNIA--TYLWILSNRK 414
            +L + +I  ++  PTDLF        T + +L   +
Sbjct: 182 KILSSCIIHDLILCPTDLFLDQGANVRTCILVLQKGR 218


>gi|116513779|ref|YP_812685.1| adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093094|gb|ABJ58247.1| Adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 332

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                     +Y  L+ +  ++    A    TP     L   +L    D L    P   +
Sbjct: 67  KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP  G+G  L      +A               G + + E   +      +  L++D
Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                         L+       +    +S+ P G            ++      R   G
Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +   +LF+  +   L          A +L    +  G  G   ++   WL     +
Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444
           +AIV LP+ LF        + I  N    +   +V L    +L    S+     K    
Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326


>gi|300779250|ref|ZP_07089108.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
 gi|300504760|gb|EFK35900.1| SNF2 family helicase [Chryseobacterium gleum ATCC 35910]
          Length = 1702

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 54/308 (17%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE-----DFMTPRDVVHLATALLLDP 194
           F   +      P+  +S+  +++  ++ S  +         ++ T   +V     L+   
Sbjct: 283 FVSEDRKITLHPNVEISDDVKNICNQYKSGGTAKEGRGILDEYYTDSKIVEAIRNLI--- 339

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
               FK    +  +  +P+ GTG FL      + D      +         E+   T  +
Sbjct: 340 -KDQFKNQKEI--SALEPSVGTGSFLYA----IKDLSVKINVTAF------EINDTTAKI 386

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                    +          N +   T + D    +++   + NPP+G +       + +
Sbjct: 387 AKIFHPEADINLRSFETEFINEKGQKTDANDY--NEKYDLVIGNPPYG-EHRGLYKGLGE 443

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           E             PKIS     F     + L+      G  A+VL S  L         
Sbjct: 444 E-------------PKISKYEDYFFKRSLDSLK----LNGVLAMVLPSGWLN-------- 478

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--KTEERRGKVQLINATDLWT 432
              R+  LEN  I     LP+  F  T I T + IL     K  E        N  ++  
Sbjct: 479 ---RQKKLENVEIMKAYRLPSGAFAGTQIETDIIILKKSSVKITEDISDYFEKNPENILG 535

Query: 433 SIRNEGKK 440
            IR +  +
Sbjct: 536 EIRKKSNR 543


>gi|330825340|ref|YP_004388643.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
 gi|329310712|gb|AEB85127.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
          Length = 995

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 43/260 (16%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+S +YEH   R+    ++      TPR +  L    +         +      T+ DP
Sbjct: 292 DVLSQVYEHFAHRYMPAKAKKTSIHYTPRAIAELVVDGVF----GATAQEKRHEVTVLDP 347

Query: 213 TCGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
             G G FL  +   +                 +        G ++ P +  V    + + 
Sbjct: 348 AVGAGVFLVLSFRRLVAETWMHTGSRPKRGTIRAILTKQLCGLDINPISIKVAALSLYLA 407

Query: 263 RLESDPRRDLSKNIQQGS-----------------------TLSKDLFTGKRFHYCLSNP 299
            LE DP      +++                          +LS  L +   +   L+NP
Sbjct: 408 ALELDPEPQPLSDLRFERLFDKTLRCVDEKYLNGAKDAELGSLSMQLRSMGPYDIVLANP 467

Query: 300 PFGKKWEKDKDAVEKE--HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           P+ +   + K  +++     + +  +    L       + F+       +     GG   
Sbjct: 468 PWTRLPGRLKKDLDRTAYAADEKAPQGAKSLVPNQWPDLAFMWRSTQWCKP----GGVIG 523

Query: 358 IVLSSSPLFNGRAGSGESEI 377
           +++ +  LF+          
Sbjct: 524 LLVHARLLFSSETAQARRHW 543


>gi|255008728|ref|ZP_05280854.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146464|ref|ZP_07808657.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135231|gb|EFR52591.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1911

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/246 (21%), Positives = 82/246 (33%), Gaps = 46/246 (18%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  +V+   + L +        SPG      DP+ GTG F++         
Sbjct: 99  ASTFTAFYTPPAIVNAIASSLGEH-----GVSPG---RFLDPSSGTGNFVSA---FQPQF 147

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            S     P +V + +             +L  R+ +    +   NI+    L        
Sbjct: 148 HSAAGNGPEIVAYEK------------DLLTGRILARLHPEAQVNIKGFEEL--PPHRNG 193

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F    SN PFG     D    +    NG   RF       S  +  F      K     
Sbjct: 194 YFDVVSSNIPFG-----DIRVFDPSFDNGTARRFAL----NSLHNYFF-----AKGLDAV 239

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   + +  A      +R++L+    + + V LP +LF     T + + L
Sbjct: 240 REGGILAFITSQGVMNSAMA----YPVRQYLMNQSRLLSAVRLPNNLFTDYAGTEVGSDL 295

Query: 408 WILSNR 413
            IL   
Sbjct: 296 VILQKD 301


>gi|86150439|ref|ZP_01068664.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85839034|gb|EAQ56298.1| type II restriction-modification enzyme [Campylobacter jejuni
           subsp. jejuni CF93-6]
          Length = 347

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 15/197 (7%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
               L     +  +++YI      +   F   +  +    L+ A +L +I + F+  +L 
Sbjct: 146 DFKQLKIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLT 205

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                ++ + N++E  +++   +       F TP  +       L   +           
Sbjct: 206 -QNSTNQFLGNLFELFLQKGMKQ---DEGQFFTPIQICEFIMYSLPLHE---MLSKNSKA 258

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLE 265
             + D  CG G FL    N +    +  ++       +G E E     V      +    
Sbjct: 259 LRVIDYACGAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQN 318

Query: 266 SDPRRDLSKNIQQGSTL 282
                    NI     L
Sbjct: 319 EI-------NILYADAL 328


>gi|325684438|gb|EGD26603.1| site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 332

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                     +Y  L+ +  ++    A    TP     L   +L    D L    P   +
Sbjct: 67  KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP  G+G  L      +A               G + + E   +      +  L++D
Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                         L+       +    +S+ P G            ++      R   G
Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +   +LF+  +   L          A +L    +  G  G   ++   WL     +
Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444
           +AIV LP+ LF        + I  N    +   +V L    +L    S+     K    
Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326


>gi|325996631|gb|ADZ52036.1| Adenine specific DNA methyltransferase [Helicobacter pylori 2018]
          Length = 1061

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 105/330 (31%), Gaps = 37/330 (11%)

Query: 42  RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGST 94
           + L+ AL     +     V   +  F     +  SF   +  +F  T  YSL  + L   
Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHP 235

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDT 149
             + +L +  +S   N   I E  DF   +  +++   LL +I    + +++        
Sbjct: 236 FEKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLN 295

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP------ 203
                  + YE  +  +  ++ E    + TP  VV      L    +  FK++P      
Sbjct: 296 DDKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSA 355

Query: 204 --GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPET 251
                  L D   GTG FL +A     +                   +   +G E     
Sbjct: 356 LDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAP 415

Query: 252 HAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           +A+    +        +   + +    I   +TL +     +   Y   NP F K+    
Sbjct: 416 YAIAHLNLSQAFKEEFKKPLKENDVLKIILTNTLIQP---SEIVAYRGLNPIFEKELSNA 472

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           +   + E+     G         + G   +
Sbjct: 473 QKIKKNENILIITGNPPYSGASENKGLFEW 502


>gi|308178806|ref|YP_003918212.1| site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
 gi|307746269|emb|CBT77241.1| putative site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
          Length = 1091

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 91/322 (28%), Gaps = 68/322 (21%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM---IRTLYDPT 213
           ++YEH +  +  E  + +  F TP +VV   T L  +          G+      + DP 
Sbjct: 316 HLYEHFLSAYNPERRKQSGSFYTPVEVVDSMTRLTDEALKKYLNTPEGLSADTVAVIDPA 375

Query: 214 CGTG--------GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRR 263
            GTG            ++  +     S          +G EL+    +V    +   IR 
Sbjct: 376 MGTGTYPLSVLRQVADNSSKYGQGAVSDAVTSAAQRLYGIELQSGPFSVAELRLTQAIRD 435

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKR------------------------FHYCLSNP 299
                  D   N+    TL        R                           C+ NP
Sbjct: 436 YGGSL-PDGGLNLYVADTLEDPKSGSSRQLSYTLQLIAEQRQRANKMKVETPIQVCIGNP 494

Query: 300 PFGKKWEKDKDAVE-----------KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           P+  K E     +E            + +    G+F   L  +      + M    +   
Sbjct: 495 PYKDKSEGLGGWIELGDPNRPNTPLDDFRLPGNGKFEYVLKNLYVYFWRWAMWKVFESTP 554

Query: 349 PPNGGGRAAIVLSS---SPLFNGRAGSGESEIRRWLLENDLIEAIVAL-------PTDL- 397
             + G    I  +     P F G        +R+W+ EN     I+ L       P +  
Sbjct: 555 ASHHGVVCFITATGYLNGPGFRG--------MRQWIRENTSRGWIINLTPEGKQPPANTA 606

Query: 398 FFRTNIATYLWILSNRKTEERR 419
            F       + +    +  +  
Sbjct: 607 VFNIETPVSIALFIRDQANDPT 628


>gi|300854032|ref|YP_003779016.1| putative methyltransferase [Clostridium ljungdahlii DSM 13528]
 gi|300434147|gb|ADK13914.1| predicted methyltransferase [Clostridium ljungdahlii DSM 13528]
          Length = 557

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 81/297 (27%), Gaps = 75/297 (25%)

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                   ++  +YE  + +   E  +    F TP  +V      ++             
Sbjct: 1   MHKWRDLSILGEMYERSMEK---EERKRKGSFYTPHYIVDYIVKNIMSN----LDLKKNP 53

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------------------- 242
              + DP+CG+G FL      + +  S +                               
Sbjct: 54  FIKVLDPSCGSGYFLVRVYEILMEKFSQNLETIRNTFNDKTYTIETEDGLKSIDGFHYWQ 113

Query: 243 -------------HGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTL------ 282
                        +G +++     +    +  +  +  +       NI   ++L      
Sbjct: 114 QENLSFHILKKCIYGADIDSIAVELTKINLSKVSGININM----EDNIICCNSLIKWNQI 169

Query: 283 ------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                       S   F   ++ Y L NPP+     K+K  +E          +      
Sbjct: 170 DNVEKYKESNIQSVVKFWNTKYDYVLGNPPWVSLSRKNKMNIEDGLLKYYSENYNGNTYL 229

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            +     F+      L+     GGR   V+              SE+R+ LLEN  I
Sbjct: 230 PNLYEY-FIKRSMEILKP----GGRFGFVVPD----RLSRNLQYSELRKSLLENYNI 277


>gi|37525126|ref|NP_928470.1| hypothetical protein plu1158 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784552|emb|CAE13452.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 657

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 10/137 (7%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A  L ++    S + +  +      +  ++  L        ++    + TP  V H+ 
Sbjct: 484 EDAFRLSRLL---SEVIMGLEYEAGDFLGAVFMAL-----ELGNDQVGQYFTPFPVSHMM 535

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             + L    A          T+ DP CG GG +      + + G +      ++    ++
Sbjct: 536 ARMKLAEGLARLGSGEHEYITVSDPDCGAGGMIIAMYQTMLEAGFN--PQQQMLAFCVDI 593

Query: 248 EPETHAVCVAGMLIRRL 264
           +P    +    + +  +
Sbjct: 594 DPVAAMMTYIQLSLLGV 610


>gi|19908492|gb|AAM02924.1|AF347071_1 restriction-modification system LlaBIII [Lactococcus lactis]
          Length = 1584

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 94/305 (30%), Gaps = 43/305 (14%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             E   F+     LE    LY+         +       +++  +Y+   +      +E  
Sbjct: 810  LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 865

Query: 175  EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232
                TP +VV      + D     F K        + DP  GTG F+   + ++ +    
Sbjct: 866  GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDA 925

Query: 233  ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282
                        +   H  E+   ++ +    +     E +   +     + I    T  
Sbjct: 926  GEISLADITRKFMKELHANEIVLLSYYIAAINIESTFDEINGDEEGYVPFEGIVLTDTFE 985

Query: 283  ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDK-DAVEKEHKNGELG- 322
               ++D      F                  + NPP+  K + +  + +   ++  +   
Sbjct: 986  STETEDTLDDDYFGTNDERLKRQQKVPITVIMGNPPYSAKQKNEDGNQIRTTYEKLDASL 1045

Query: 323  -RFGPGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                      ++ + LF  ++          +  G    + ++S + +G A  G   +R+
Sbjct: 1046 QNSWVETSTATNKNNLFDSYIRAMRWSSDRISDNGVIGFITNNSFI-DGNAMDG---MRQ 1101

Query: 380  WLLEN 384
             LLE 
Sbjct: 1102 SLLEE 1106


>gi|163869203|ref|YP_001610455.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161018902|emb|CAK02460.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1652

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 98/369 (26%), Gaps = 49/369 (13%)

Query: 44   LECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
             +  L   R  + +         +  +  + +      +   +++     S   +  L  
Sbjct: 757  FDRFLAELRDDLNDTITEADAIEMLAQHIITRPVFQVLFEGYQFTRENPVSRAMQRML-- 814

Query: 103  YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                       + ++ +       LEK    Y   K  +     P      ++  +Y+  
Sbjct: 815  ----------DVLDEANLDKESKDLEK---FYASVKLRASGITDPKAKQRLIV-ELYDKF 860

Query: 163  IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-IRTLYDPTCGTGGFLT 221
             R       E      TP +VV      + D     F ++ G     + DP  GTG F+T
Sbjct: 861  FRYAFPRTVEKLGIVYTPVEVVDFILNSVNDILKNEFGQTLGSSGVHIMDPFTGTGTFIT 920

Query: 222  DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQG 279
              +          K       H  E+    + +    +      L         + I   
Sbjct: 921  RLLQSGLIKPEEMKHKFCHEIHANEIVLLAYYIAAINIETTYHGL-MGGGYVPFEGICLT 979

Query: 280  STL-------------------SKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKN 318
             T                     +           + NPP+  G+K E D        K 
Sbjct: 980  DTFQLYEQDKDLISDLLMANSTRRSRQKELDIRVIVGNPPYSSGQKSENDNAQNIDYPKL 1039

Query: 319  GELGRFGPGLPKIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                R        +   +G     +             G    V ++  + NG + +G  
Sbjct: 1040 DRRIRETYAAQSKASNVNGLYDSYIRAMRWATDRIKSSGVIGFVTNAGFI-NGYSMNG-- 1096

Query: 376  EIRRWLLEN 384
             +R+ L E 
Sbjct: 1097 -LRKELNEE 1104


>gi|325998221|gb|ADZ50429.1| Adenine specific DNA methyltransferase [Helicobacter pylori 2017]
          Length = 1060

 Score = 56.9 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 105/330 (31%), Gaps = 37/330 (11%)

Query: 42  RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGST 94
           + L+ AL     +     V   +  F     +  SF   +  +F  T  YSL  + L   
Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHP 235

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDT 149
             + +L +  +S   N   I E  DF   +  +++   LL +I    + +++        
Sbjct: 236 FEKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLN 295

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP------ 203
                  + YE  +  +  ++ E    + TP  VV      L    +  FK++P      
Sbjct: 296 DDKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSA 355

Query: 204 --GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPET 251
                  L D   GTG FL +A     +                   +   +G E     
Sbjct: 356 LDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAP 415

Query: 252 HAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           +A+    +        +   + +    I   +TL +     +   Y   NP F K+    
Sbjct: 416 YAIAHLNLSQAFKEEFKKPLKENDVLKIILTNTLIQP---SEIVAYRGLNPIFEKELSNA 472

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           +   + E+     G         + G   +
Sbjct: 473 QKIKKNENILIITGNPPYSGASENKGLFEW 502


>gi|325298274|ref|YP_004258191.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
 gi|324317827|gb|ADY35718.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
          Length = 234

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 31/166 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +IY        +   +    F TP  +  L TA     +           + + DP
Sbjct: 86  DPFGDIYMAF---SSAGSKQAQGQFFTPAPICELMTACAGTGEH-------QPGQRMGDP 135

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV + G            G+++      + V  ML+           
Sbjct: 136 TCGSGRLLLAW--HVRNLGG--------YLVGEDINRTCCLMTVCNMLVHG--------G 177

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCL---SNPPFGKKWEKDKDAVEKE 315
              +    +L  + F        +   +  P  +K  +++    +E
Sbjct: 178 VGEVIWHDSLQPEKFNDGWLVNPVLTHTGIPTIRKMSEEEYRKSRE 223


>gi|295697974|ref|YP_003602631.1| hypothetical protein ECL_A136 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295060086|gb|ADF64823.1| hypothetical protein ECL_A136 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 263

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 17/168 (10%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           E+ + S  I    +   L  + + F  +           +  +Y           ++   
Sbjct: 74  ENIENSRRICARYQPDDLDAMKQLFCLLVEGLAGDIHDFLGALYME-----QELGADEMG 128

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            + +P  +  L   LL+       K       TL +P CG+ G +      +A+ G +  
Sbjct: 129 QYFSPSCISRLMAGLLMPGAQETIKRE--GWMTLDEPACGSAGMVIAFAYWMAEAGYNPS 186

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                     +++P    +    + +  +           +  G+TL+
Sbjct: 187 EQLYAT--CTDIDPMVADMAFIQLALLGI--------PAKVVTGNTLT 224


>gi|256845253|ref|ZP_05550711.1| N-6 DNA methylase [Fusobacterium sp. 3_1_36A2]
 gi|256718812|gb|EEU32367.1| N-6 DNA methylase [Fusobacterium sp. 3_1_36A2]
          Length = 871

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/526 (13%), Positives = 145/526 (27%), Gaps = 123/526 (23%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFGSEVS--- 171
           F     +  L    ++++  +  S  +   +   +  + +I+E  I     F S+++   
Sbjct: 322 FKADEDLDTLIIDDIVFEKMQAISEYDFDSELNENI-LGHIFEQSISDIEEFKSQINEQD 380

Query: 172 --------EGAEDFMTPRDVVHLATA--------------------LLLDPDDALFKESP 203
                   +    F TP+ +                          +L D D     ++ 
Sbjct: 381 FDVKKGKRKKDGIFYTPKYITKYIVENTINYWLEDKRIELGEDKLPILTDEDYNHKYKNK 440

Query: 204 G------------------------MIRTLYDPTCGTGGFLTDAMNHVADC--------- 230
                                        + DP CG+G FL  A   +            
Sbjct: 441 TSSVKVFSENYKKHIDFWKKYKEAIKNIKILDPACGSGAFLITAFEFLLKQTNMIDEKLL 500

Query: 231 ---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280
                        +        G +L  E+  +    + ++    +      + NI+ G+
Sbjct: 501 DLTGEQDLFSDTTRYILENNIFGVDLNRESVEITKLSLWLKSANKNKTLTTLENNIKCGN 560

Query: 281 TLSKDL-----------------FTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELG 322
           +L KD                  F  + F   + NPP+  ++  K+     +++     G
Sbjct: 561 SLIKDKEFVKDLVFDWEKEFPEVFKNRGFDIVIGNPPYVRQESIKEIKPYLEQNYRVYTG 620

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                   ++D    F     N L+     G      ++S+  F      GE ++R +LL
Sbjct: 621 --------VADLYCYFYELGYNLLKDNGYLG-----FITSNKWFR--TKYGE-KLREFLL 664

Query: 383 ENDLIEAIVAL-PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK- 440
                  IV    T +F    + + + I    K +     +Q+ +   +        K+ 
Sbjct: 665 NYTEFYNIVDYNGTKVFEGATVDSNILIFKKNKVKNSIFSLQIADTIPVEYKQEKLSKES 724

Query: 441 ---RRIINDDQRRQILDIYVSRENGKFSRMLD-----YRTFGYRRIKVLRPLRMSFILDK 492
                   D  + +I  I    +    S            F   +    + L   +  + 
Sbjct: 725 FIFINQNEDFIKEKIERIGKPLKEWDISMNYGIKTGLNEAFIIDKETRDKLLEEDYK-NS 783

Query: 493 TGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
             +  L       K + L    +L  +                 K+
Sbjct: 784 EIIKPLLRGKDIEKYNILFADKYLIYIPWHFPNTDNPKSFIENEKD 829


>gi|312977660|ref|ZP_07789407.1| putative modification methylase [Lactobacillus crispatus CTV-05]
 gi|310895399|gb|EFQ44466.1| putative modification methylase [Lactobacillus crispatus CTV-05]
          Length = 333

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 100/318 (31%), Gaps = 42/318 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
               + ++ + +  I+   D +  +  + ++  L  +  ++         TP  +  +  
Sbjct: 50  DEKTVAELSQKYQAIDY--DEISQKEKAQVFTFLTLKAVNDDGFDVNQMPTPPAIATVVA 107

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            L+                 + DP  GTG  L   ++ +                G + +
Sbjct: 108 MLMHKLLKDQ-------KMEIVDPAVGTGNLLFSIISQLKALNHS---KDNYQLVGIDND 157

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
            +   + +  +       D        +     L    +        +S+ P G  +  D
Sbjct: 158 EDM--LSLTDVAAHLNNIDIE------LYHQDALMP--WMCPNADAIVSDLPVGY-YPVD 206

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           ++A   E++  +   F           +L +  + N L+      G A +V+  S L   
Sbjct: 207 ENAKNFENQAKKGHSF---------AHLLLIEQIINNLKP----NGYAFLVVPKSIL--- 250

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
            +G   ++   WL +   ++AIV LP D+F        + +  N   E +  +V L    
Sbjct: 251 -SGKIGADFMPWLTKKVYLKAIVELPDDMFKNKFNPKSVLVFQNHGDEAKASEVLLTKLG 309

Query: 429 DLWTSIR--NEGKKRRII 444
            L           K    
Sbjct: 310 SLKKEETLIQFNVKLNEW 327


>gi|165933915|ref|YP_001650704.1| type I restriction-modification system methylation subunit
           [Rickettsia rickettsii str. Iowa]
 gi|165909002|gb|ABY73298.1| type I restriction-modification system methylation subunit
           [Rickettsia rickettsii str. Iowa]
          Length = 152

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 11/154 (7%)

Query: 299 PPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
            PF +   +K     +   +N     F  G+   ++G    ++H    L+     GGR A
Sbjct: 1   MPFSQAITKKTSKNGKIITENHITFLFNNGIA-KNNGDAACVLHCLQNLKE----GGRMA 55

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTE 416
           +V+    LF     +      ++LL    ++ +++LP   F   T + T +   +     
Sbjct: 56  LVVPEGFLFRKDTSAVH----QFLLSKAKLQLVISLPQGTFLPYTGVKTSILYFTMHINR 111

Query: 417 ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
             +  +  +        + N+ +K   IND  RR
Sbjct: 112 IIKKNIGFMRLRISALRLDNKKRKIVGINDLNRR 145


>gi|104773773|ref|YP_618753.1| hypothetical protein Ldb0685 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422854|emb|CAI97514.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 332

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                     +Y  L+ +  ++    A    TP     L   +L    D L    P   +
Sbjct: 67  KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP  G+G  L      +A               G + + E   +      +  L++D
Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                         L+       +    +S+ P G            ++      R   G
Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +   +LF+  +   L          A +L    +  G  G   ++   WL     +
Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLLPQNMLTGTVG---ADFMPWLASKVYL 267

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444
           +AIV LP+ LF        + I  N    +   +V L    +L    S+     K    
Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326


>gi|85713748|ref|ZP_01044738.1| putative methylase [Nitrobacter sp. Nb-311A]
 gi|85699652|gb|EAQ37519.1| putative methylase [Nitrobacter sp. Nb-311A]
          Length = 507

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 83/273 (30%), Gaps = 37/273 (13%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +  +Y  ++    ++V      + TP  V      L ++    L          + DP  
Sbjct: 40  IGTLYTLML---PTKVRRSQATYFTPPGVADAVVELAIEAGFDL------AGDDVLDPAA 90

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G   FL+     +A  G               L        +A +    +       L +
Sbjct: 91  GGAAFLSTIAGRMAAVGLAANEVAF------RLNGIEIDAGLATLSRHLIADRLGAALPR 144

Query: 275 NI-QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           ++   G  L   +     +   ++NPP+G+    D          GE  R       I+ 
Sbjct: 145 DVVIIGDALR--VQIPASYGLVIANPPYGRMSIDDVH--------GEAWRRVAHTGHINK 194

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI--V 391
            ++ F        +     GG  A+V+ SS  F      G   +R+++     +  I  +
Sbjct: 195 YAL-FAELCFRNAKP----GGVVALVIPSS--FRAGPLYG--RMRKFIRSQGEVLTIGSI 245

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           A    +F        + I    K       V+ 
Sbjct: 246 ADRDGIFLDVAQDISVLIARKGKPHRAEAMVRF 278


>gi|308513269|ref|YP_003933665.1| hypothetical protein HMPREF0868_0152 [Clostridiales genomosp.
          BVAB3 str. UPII9-5]
 gi|307346975|gb|ADN43952.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3
          str. UPII9-5]
          Length = 59

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 5/35 (14%), Positives = 13/35 (37%)

Query: 4  FTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPF 38
               + L + +W+    L G  + + +   +L  
Sbjct: 1  MAVKKSELYSILWEACNKLRGGVEPSRYKDYVLVL 35


>gi|332672840|gb|AEE69657.1| probable adenine specific DNA methyltransferase [Helicobacter
           pylori 83]
          Length = 843

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 103/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIIKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y    P F  +    ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SETIAYRGLQPIFETELLNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495


>gi|296270474|ref|YP_003653106.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
 gi|296093261|gb|ADG89213.1| N-6 DNA methylase [Thermobispora bispora DSM 43833]
          Length = 689

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 91/304 (29%), Gaps = 59/304 (19%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-RFGSEVSEGAEDFMTPRDVVHL 186
           + AG L  +                      +E L+  R    V++   D +TP ++  L
Sbjct: 141 DDAGWLASVVDELIEAAWG--------CRQAFERLLAVRGRLNVADLYLDAVTP-ELARL 191

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              L    + A           + DP    G  L   +  +++           V  G E
Sbjct: 192 IAGLSGAREHAE----EFGTVRVADPAARAGDLLVAVLGQLSE-------DSFPVFTGAE 240

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +P    +    +++  +                 +             ++  P+    E
Sbjct: 241 PDPFLARIARRRLVVHGIPPHDID-----------IRCPGDPPLPADVLVTRLPYVPLEE 289

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           + ++      K         GL     G                   G A +++   P +
Sbjct: 290 RPQENPLATVKELTD-----GLAP---GQ-------------TTVVLGPADVLVDGLPPY 328

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLI 425
              A       R  LL +  +EA++ LP  L  FR    T LW+L   +    +G+V L 
Sbjct: 329 RPAAR-----TRNELLASGRVEAVIHLPGGLVPFRPGYQTALWVLRREEPSPWQGRVLLA 383

Query: 426 NATD 429
           + +D
Sbjct: 384 DVSD 387


>gi|308183463|ref|YP_003927590.1| adenine specific DNA methyltransferase [Helicobacter pylori PeCan4]
 gi|308065648|gb|ADO07540.1| adenine specific DNA methyltransferase [Helicobacter pylori PeCan4]
          Length = 1154

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL           + + +  +    +  E F      +   T    L+ L     
Sbjct: 174 KYLKDALIQYHEEQQVSSIFKNFKEYLYEELSFEDFSDAFAQTL--TYSLFLAKLNHPFE 231

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + +  +  +S   N   I E  DF   +  +++   LL +I    + +++          
Sbjct: 232 KIDFNNVRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILSLINHVDMDSIIKDLNDD 291

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 292 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTRFKDAPLGLKSALD 351

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 352 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 411

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +     +  +   + + +  I   +TL +              P F K+ +  ++
Sbjct: 412 IAHLNLSQAFKQEFKKPLKENDALKIILTNTLIQPSEIAADRGLQ---PIFEKELKNAQE 468

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         + G   +
Sbjct: 469 IKKNENILIITGNPPYSGASENKGLFEW 496


>gi|117925307|ref|YP_865924.1| type II DNA modification enzyme [Magnetococcus sp. MC-1]
 gi|117609063|gb|ABK44518.1| putative type II DNA modification enzyme [Magnetococcus sp. MC-1]
          Length = 1354

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 29/218 (13%)

Query: 91  LGSTNT-RNNLESYIASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           L +      +L   I + S +AK    E  ++   +   E   +   + +    I++   
Sbjct: 382 LDAAEIDNAHLLEAIRAISFHAKGKALERINYRD-MGTEELGSVYESLLELHPRIDVETA 440

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---- 204
                 + +  +    +      +    + TP  +V+      L+P              
Sbjct: 441 PWQFGFVGDDEDEKSGKGSD--RKLTGSYYTPPSLVNELIKSALEPVLERTIRDNPTDPV 498

Query: 205 ---MIRTLYDPTCGTGGFLTDAMNHV----------------ADCGSHHKIPPILVPHGQ 245
              +   + DP CG+G FL  A  H+                       +       +G 
Sbjct: 499 GALLKLKVCDPACGSGHFLLAAARHMGAEIARLTADSDTPGEQQRQHALREVVRHCIYGV 558

Query: 246 ELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282
           +  P +  +C   + I  LE   P   L   I+ G +L
Sbjct: 559 DKNPLSVELCKTALWIETLEPGRPLTFLDHRIKCGDSL 596


>gi|325125435|gb|ADY84765.1| Putative modification methylase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 332

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                     +Y  L+ +  ++    A    TP     L   +L    D L    P   +
Sbjct: 67  KNWSKAQKEQVYGLLVLKAVNDDGRDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP  G+G  L      +A               G + + E   +      +  L++D
Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                         L+       +    +S+ P G            ++      R   G
Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +   +LF+  +   L          A +L    +  G  G   ++   WL     +
Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444
           +AIV LP+ LF        + I  N    +   +V L    +L    S+     K    
Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVAFNIKLNEW 326


>gi|28373198|ref|NP_783835.1| putative YeeA protein [Lactobacillus fermentum]
 gi|28273041|emb|CAD59898.1| putative YeeA protein [Lactobacillus fermentum]
          Length = 932

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 95/352 (26%), Gaps = 85/352 (24%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNI---DLESFVKVAGYSFYNTSEYSLSTLGST 94
              L   + +    +  + + ++          DL    KV          Y        
Sbjct: 217 LVFLLYADDSNLFGKEDIFQAFIERREPRDIRRDLSELFKVLDQPEEQRDPYL------- 269

Query: 95  NTRNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
           +   N  +Y+    FSD    I   F              L ++    +G       +  
Sbjct: 270 DDEFNQFAYVNGGMFSDE-NVIIPQF-----------TDELKRLIVEDAGRGFDWSGISP 317

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKESPGMIR 207
            +   ++E  +     E         T  + +H     L   D     D +        R
Sbjct: 318 TIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDPLFLNDLHDEFDKIQNMGNRRQR 374

Query: 208 --------------TLYDPTCGTGGFLTDAMNHVADCGSH------------------HK 235
                           +DP CG+G FLT+    +    +                     
Sbjct: 375 VTRAKAFRDKLGKLKFFDPACGSGNFLTETYLSLRKMENECLRIIVGNQGALALTDESEP 434

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIR-------------RLESDPRRDLSKNIQQGSTL 282
              I   +G E+     +V    M I                +     D + +I +G+ L
Sbjct: 435 KVKIQNFYGIEINDFAVSVARTAMWIAESQMWEQTKDITFANKDFLPLDSNDSIYEGNAL 494

Query: 283 ---SKDLFTGKRFHYCLSNPPF---GKKWEKDKDAVEKEHKN--GELGRFGP 326
                D+       Y + NPPF     + ++ K  +++E      + G+F  
Sbjct: 495 RMDWNDIVKPYELDYIMGNPPFVGYSLQTKEQKQDIKQEFFKYTDKYGKFDY 546


>gi|39936439|ref|NP_948715.1| DNA methyltransferase [Rhodopseudomonas palustris CGA009]
 gi|39650294|emb|CAE28817.1| possible DNA methyltransferase [Rhodopseudomonas palustris CGA009]
          Length = 1091

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 83/324 (25%), Gaps = 64/324 (19%)

Query: 43  RLECALEPTRSAVREKYL------AFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGST 94
           RL   L   R  V E+             +     F +     F +      +   L + 
Sbjct: 175 RLCRLL---RDEVIEQLELGSAGLTELAKDWRHLLFPQADNAQFADGYAQAVTFGLLVAR 231

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG--------LLYKICKNFSGIELH 146
               +L   I + +   +    +    + +  L             L  + +    +  H
Sbjct: 232 AKDISLIKGIDAAAQELRK--SNTLIGTALRLLTDDDDNQQALKTSLGTLTRVLGEVNWH 289

Query: 147 PDTVPDRVMS-NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG- 204
             +          YE  +  + + + +    + TP +VV     L  +         P  
Sbjct: 290 VISKDKPEAWLYFYEDFLEVYDNTLRKKTGSYYTPPEVVAAMVRLADEALRGELFGRPKG 349

Query: 205 ---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---------IPPILVPHGQELEPETH 252
                 T+ DP  GTG FL   +  +A+     +                 G EL+    
Sbjct: 350 FASPDVTVADPAVGTGTFLLGVLRKIAETVKDDEGAGAVRGAIEAAAKRLFGFELQFGPF 409

Query: 253 A------VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-------------------- 286
           A      +     L+    +        N+    TL                        
Sbjct: 410 AVAQLRLIAEMQALVATKTNPLPDIPELNLFITDTLGNPFVEEESLGQVYEPIAKSRREA 469

Query: 287 ---FTGKRFHYCLSNPPFGKKWEK 307
                 K     + NPP+ +K + 
Sbjct: 470 NAVKKDKPITVVIGNPPYKEKAKG 493


>gi|298369068|ref|ZP_06980386.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298283071|gb|EFI24558.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 273

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 76/215 (35%), Gaps = 33/215 (15%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFS---------DNAKAIFEDFDFSSTIARLE 128
            SF+  S Y LS +          + I  F+         +    I + +   +   ++ 
Sbjct: 36  QSFH--SGYRLSEVFGDFIEVATIALINRFTFDGDWEQREERYHEIRKKYT-EAEFGKMP 92

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +  +L K+ + F  I+       + ++  IY  L        S+    + TP  +  +  
Sbjct: 93  E--ILAKLVEKF--IKAGQSGTYEDILGEIYMLL-----DLGSQSKNQYFTPFYICRMMA 143

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            ++ +      + +P    ++ +P+CG+G  +      +   G  H      V    +  
Sbjct: 144 QIVGEGLADKLEGNP--FVSIMEPSCGSGANIIAFAETIRLKGFDHLQKMAAVAIDID-- 199

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                +C A M    ++ +     +K I  G+ L+
Sbjct: 200 -----ICCARMCF--IQCELLGIPAK-IIHGNALT 226


>gi|317182420|dbj|BAJ60204.1| Type II modification enzyme [Helicobacter pylori F57]
          Length = 597

 Score = 56.5 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 28/207 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V + ++E+L+ +   E         TP+ +            + L          + DP
Sbjct: 66  DVFNALFENLLDQ---ERKTKFGMIFTPKYIADFICNETFAKFEDLNNIK------VIDP 116

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLES---DP 268
            CG G FL  A+  +                 G +++ +   V    +L++ +     + 
Sbjct: 117 CCGCGIFLISAIEQIKSKTKKSIKQIIKNQIFGLDIDND--NVKKVILLLKIMGLVYNEN 174

Query: 269 RRDLSKNIQQGSTLSKDLFT--GKRFHYCLSNPPFGKKW---EKDKDAVEKEHKNGELGR 323
             D   NI+   +L  D        F   + NPP+       +K    +++  +    G 
Sbjct: 175 IEDCDINIRHCDSLITDWKLAFDIDFDCIIGNPPYINPHSLSKKQTAFLKQNFQTTSSGV 234

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPP 350
           F             F+      ++   
Sbjct: 235 FNIF--------YAFIELGMKFIKPNG 253


>gi|302345456|ref|YP_003813809.1| hypothetical protein HMPREF0659_A5726 [Prevotella melaninogenica
           ATCC 25845]
 gi|302150035|gb|ADK96297.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
           25845]
          Length = 50

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 625 DKEIGRVGYEINFNRFFYQYQPSRKLQDIDAELKG 659
           D+   ++G E  F + FY Y+P R L  I A++K 
Sbjct: 2   DRSKDKIGCEFPFTKLFYVYRPMRDLDAILADIKR 36


>gi|309806208|ref|ZP_07700224.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|312874421|ref|ZP_07734451.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d]
 gi|308167427|gb|EFO69590.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|311090033|gb|EFQ48447.1| conserved hypothetical protein [Lactobacillus iners LEAF 2052A-d]
          Length = 333

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F++ +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVSSYLNKLPIDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLNPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|225868542|ref|YP_002744490.1| type II restriction enzyme-methylase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701818|emb|CAW99252.1| type II restriction enzyme-methylase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 990

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 88/316 (27%), Gaps = 80/316 (25%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                TP+++  L      +      +        + D  CG+G FL  A  ++ +    
Sbjct: 344 FGAVTTPKEIADLIVKESFEIRSEKNEIILEE-FKIADICCGSGIFLLSAYEYLQNIIYD 402

Query: 234 ----------------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
                                        K        G +++     VC   +L+  L 
Sbjct: 403 FSIKRLQQSLDDGVLVKEQNSYQLSFKTKKELLKSAIFGVDIDLSAVEVCKFSLLLSCLR 462

Query: 266 S------------DPRRDLSKNIQQGSTLSKDLF-------------------------- 287
           +                +L  NI+ G++L  D F                          
Sbjct: 463 NISFTELAQIKQESLLPNLDNNIKFGNSLVDDKFYDYYSTSNNSDNLLDIVGKISPFDFK 522

Query: 288 ----TGKRFHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  +F   + NPP+ +  +      +E ++       +        D   LF+   
Sbjct: 523 EEFGKDIKFDLIVGNPPYTRSQKLAKYSPIEYQYFKSLASNYKSAQISSLDKYHLFVERG 582

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRT 401
            + L       G    ++ +  +        ++  R  L EN  ++ I+      LF   
Sbjct: 583 LHLLRENS---GVLGYIIPNRFI----KEKNQNTFRHILFENRCVKKIINYNEIQLFHGV 635

Query: 402 NIATYLWILSNRKTEE 417
           +  T L  L++ +  +
Sbjct: 636 SAYTCLLFLTSDRNHK 651


>gi|145223790|ref|YP_001134468.1| DNA methylase [Mycobacterium gilvum PYR-GCK]
 gi|145216276|gb|ABP45680.1| DNA methylase [Mycobacterium gilvum PYR-GCK]
          Length = 1189

 Score = 56.5 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 86/312 (27%), Gaps = 68/312 (21%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + + Y+ L         +      TP  V        ++P      + P    T+ DPTC
Sbjct: 188 LGDAYQDL----SEHAKKTYALLQTPEFVEEFILDQTMEP---ALADRPLQGFTVIDPTC 240

Query: 215 GTGGFLTDAMNHVADC---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           G+G FL  A   +                    +   +G ++ P   A+    +L+  L 
Sbjct: 241 GSGHFLLGAFARLHQRWQREAPALGARELVAKALDGIYGVDINPFAVAIARFRLLVAALH 300

Query: 266 SDPRRDLSKNI------QQGSTL-------------------SKDLFTG---------KR 291
           +     + +NI        G +L                     D             + 
Sbjct: 301 AAGDSSIEQNIGYTPHLAAGDSLLWGANQQLLPEDLLAGPAIRADATEDADALRSILQRE 360

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               + NPP+    +   +A  ++  +    ++   +P       + L+           
Sbjct: 361 HDVVVGNPPYITPKDAALNATYRKLYSTTHRQYALTVP------FMELLFRLAHGSAGTR 414

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL----IEAIVALPTDLFFRTNIATYL 407
             G    + S+S L          E    L+E  L    +  ++             T +
Sbjct: 415 PAGWIGQITSNSFLKR--------EFGSKLIEEFLPTVDLREVIDTSGAYIPGHGTPTVI 466

Query: 408 WILSNRKTEERR 419
            +   ++     
Sbjct: 467 IVGRKQRPSSDT 478


>gi|315653343|ref|ZP_07906265.1| DNA methyltransferase [Lactobacillus iners ATCC 55195]
 gi|315489268|gb|EFU78908.1| DNA methyltransferase [Lactobacillus iners ATCC 55195]
          Length = 333

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 103/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F+  +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFD--NLEHQKIKVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLNPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|109946823|ref|YP_664051.1| putative adenine specific DNA methyltransferase fragment 1
           [Helicobacter acinonychis str. Sheeba]
 gi|109714044|emb|CAJ99052.1| putative adenine specific DNA methyltransferase fragment 1
           [Helicobacter acinonychis str. Sheeba]
          Length = 864

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 107/327 (32%), Gaps = 34/327 (10%)

Query: 42  RRLECALEPTRS--AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97
           + L+ AL   +    V   +  F     +  SF   +  +F  T  YSL  + L     +
Sbjct: 170 KYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSD-AFAQTLTYSLFLAKLNHPFEK 228

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPD 152
            NL++  +S   N   I E  DF   +  +++   LL +I    + +++       +   
Sbjct: 229 INLDNVRSSIPKNFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDK 288

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204
               + YE  +  +  E+ E    + TP  VV      L       FK++P         
Sbjct: 289 DPYLHFYETFLSAYDPELREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDN 348

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254
               L D   GTG FL +A     +                   +   +G E     +A+
Sbjct: 349 ENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAI 408

Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
               +        +   + + +  I   +TL +     +   Y   NP F ++    ++ 
Sbjct: 409 AHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQP---SEIAAYRGLNPIFEEELLNAQEI 465

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338
            + E      G         + G   +
Sbjct: 466 KKDEKILIITGNPPYSGASSNKGLFEW 492


>gi|218884514|ref|YP_002428896.1| predicted endonuclease-methyltransferase fusion protein
           [Desulfurococcus kamchatkensis 1221n]
 gi|218766130|gb|ACL11529.1| predicted endonuclease-methyltransferase fusion protein
           [Desulfurococcus kamchatkensis 1221n]
          Length = 1241

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
            + Y A     +  E      G  FY +    L    +      L   +A        IF
Sbjct: 247 VQTYYALILKLLAAEVVYLYGGGRFYKSYIAELDDAYTGGGVQALRKALAKLESG--GIF 304

Query: 116 EDFDFSSTIA---------RLEK--AGLLYKICKNFSGIELHPDTVP----DRVMSNIYE 160
           + F   + +           L++  A +L +I +  +  E     +       ++  +Y+
Sbjct: 305 KQFGIENFLEGDYFSWYLEELDQILADVLAEIARKLANYEPATPQLEPESARDLLKRLYQ 364

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-----GMIRTLYDPTCG 215
           HL+     +V     ++ TP  +       +    D L +         +   + DP CG
Sbjct: 365 HLV---PEDVRHNLGEYYTPDWLADFLLDRVGLSRDRLNELGSEYSLRPLEIRVLDPACG 421

Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL------VPHGQELEPETHAVCVAGMLIRRLESDPR 269
           +G FL   +  + D    H +  ++         G +L P          L+   +   R
Sbjct: 422 SGTFLVRYIARLRDYAREHFLEDVMLDYLLENIVGYDLNPLAVLAARTNYLLMIADLPRR 481

Query: 270 RDLSKNIQQGSTL 282
             +   +    ++
Sbjct: 482 GSIEIPVYLADSI 494


>gi|145631143|ref|ZP_01786917.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae R3021]
 gi|144983241|gb|EDJ90732.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae R3021]
          Length = 253

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 72/191 (37%), Gaps = 23/191 (12%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++   L ++   F+ I    +      + +++  L         E    + TP  + HL 
Sbjct: 62  DEKQALSRL---FNIIVEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLM 113

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            A+ L    +L K       TL +PTCG+G  + +A N++ +          +    ++L
Sbjct: 114 AAVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDL 169

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWE 306
           +     +C   M +  +  +        +  G+TL  +  +      + + N  + KK E
Sbjct: 170 DFTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLE 219

Query: 307 KDKDAVEKEHK 317
                 E E++
Sbjct: 220 SADSYTEAEYQ 230


>gi|68248686|ref|YP_247798.1| type I restriction enzyme M subunit [Haemophilus influenzae
           86-028NP]
 gi|68056885|gb|AAX87138.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae 86-028NP]
 gi|301168729|emb|CBW28320.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae 10810]
          Length = 253

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 72/191 (37%), Gaps = 23/191 (12%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++   L ++   F+ I    +      + +++  L         +    + TP  + HL 
Sbjct: 62  DEKQALSRL---FNIIVEALEHKTYDFLGSVFMSL-----DLGDQYKAQYFTPSHIAHLM 113

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            A+ L    +L K       TL +PTCG+G  + +A N++ +          +    ++L
Sbjct: 114 AAVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDL 169

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWE 306
           +     +C   M +  +  +        +  G+TL  +  +      + + N  + KK E
Sbjct: 170 DFTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLE 219

Query: 307 KDKDAVEKEHK 317
                 E E++
Sbjct: 220 SADSYTEAEYQ 230


>gi|73669701|ref|YP_305716.1| type II restriction enzyme, methylase subunit [Methanosarcina
           barkeri str. Fusaro]
 gi|72396863|gb|AAZ71136.1| type II restriction enzyme, methylase subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 836

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/465 (14%), Positives = 134/465 (28%), Gaps = 112/465 (24%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            IF+  D   ++  +    +L  I K   +         V  R++  IYE  + +    V
Sbjct: 99  GIFDFIDDEFSLKFVINDEILVNIFKELYYPNSPYSFSVVDARILGEIYEMFLAKEAHIV 158

Query: 171 SEGA-------------EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++ +                 TP+ +V       + P              + D +CG+G
Sbjct: 159 NKSSIEIVEKPEVIESRGIVPTPKYIVDAIIERTVKPKCEGKNPIELSQLKIADISCGSG 218

Query: 218 GFLTDAMNHVADCGSHHKIPPI----------------------------LVPHGQELEP 249
            FL     ++ +      I                                   G +++ 
Sbjct: 219 SFLLATYEYLLNYYLEWYIQDGVEKHTNELFEHTTGTFYLRLEEKCKILLNNIFGVDIDS 278

Query: 250 ETHAVCVAGMLIRRLESDPRRDLS---------------KNIQQGSTLSK---------- 284
           +   V   G+L++ LE+     ++               KNI  G++L            
Sbjct: 279 QAVEVTKFGLLLKTLENVNSSVVATLSTRSRTGVLPKLSKNIICGNSLVDSNYFYFEPKA 338

Query: 285 --------------------DLFTGKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGR 323
                               D+     F   + NPP+   +        E E+   +   
Sbjct: 339 KVQENIYYRVNPFDWNNEFKDVIEKGGFDVIIGNPPYVRIQNIVKYSPKEVEYYKSKYSP 398

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F        D   LF+      L       G    ++               E+RR +  
Sbjct: 399 FVTANKDNIDKYYLFIERAKYLLNSE----GILGYIVPHKFF----KIKSGQELRRLISS 450

Query: 384 NDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
           N  +  IV      +F      T + +L +++ +E   KV  ++  D W + +N      
Sbjct: 451 NKNLSEIVHFGVEQVFGTKTTYTCILVLQSKELDEF--KVNFVSNIDDWRNGKNV----- 503

Query: 443 IINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMS 487
                Q  +    Y++     +  +       ++RI    P+++ 
Sbjct: 504 -----QIEKYKSNYIN--ETPWIFLHPKLDKLFKRINSENPVKLE 541


>gi|157826495|ref|YP_001495559.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
 gi|157801799|gb|ABV78522.1| Type I restriction-modification system methyltransferase subunit
           [Rickettsia bellii OSU 85-389]
          Length = 183

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 55/137 (40%), Gaps = 13/137 (9%)

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +  +   L+      G+A +V+             +  +R+ +L+N  I+AI++LP   F
Sbjct: 1   MEWIVKALKP----NGKAFVVVPDGIFNRQN----DKNLRQLILDNCFIDAIISLPLKTF 52

Query: 399 FRTNIATYLWILSNRK--TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           F T   TY+  ++ +   ++ +   V     +++     +    R  I  D  ++ ++++
Sbjct: 53  FTTPKKTYILAITKKHNISQIQTDPVFTYLCSEIGE---SRDIYRFDIEQDDLKEAVNLF 109

Query: 457 VSRENGKFSRMLDYRTF 473
            + +  K          
Sbjct: 110 NAFKGSKKYFANINHDK 126


>gi|268318892|ref|YP_003292548.1| putative type II restriction endonuclease [Lactobacillus johnsonii
           FI9785]
 gi|262397267|emb|CAX66281.1| putative type II restriction endonuclease [Lactobacillus johnsonii
           FI9785]
          Length = 923

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 74/267 (27%), Gaps = 70/267 (26%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           Y+    FSD    I     F+  +  L    LL K    F   E+ P      +   ++E
Sbjct: 270 YVNGGMFSDENIEIPP---FTDELRDL----LLSKASDEFDWSEISPT-----IFGAVFE 317

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIR------------ 207
             +     +         T  + +H     L  D       E   + +            
Sbjct: 318 STL---NPDTRRQGGMHYTSIENIHKVIDPLFLDELKDELNEIKKVKQPAKLKKKASAFQ 374

Query: 208 ------TLYDPTCGTGGFLTDAMNHVADC------------------GSHHKIPPILVPH 243
                 T +DP CG+G FLT+    +                             I   +
Sbjct: 375 DKLANLTFFDPACGSGNFLTETYLQLRRLENDAIKLIYPNPSLDVGQAQDIIKVSIQQFY 434

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTL---SKDLF 287
           G E+     +V    + I   +                      NI +G+ L     D+ 
Sbjct: 435 GIEINDFAVSVAKTALWIAESQMLEETKDIFYADWDFLPLKTYTNIHEGNALRIYWNDVL 494

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                HY + NPPF     + +D  E 
Sbjct: 495 PNYACHYVMGNPPFIGTKYESEDQKED 521


>gi|315037968|ref|YP_004031536.1| Adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1112]
 gi|312276101|gb|ADQ58741.1| Adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1112]
          Length = 333

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 112/366 (30%), Gaps = 59/366 (16%)

Query: 98  NNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGL-----------LYKICKNF 140
            N E     F D  + +    +         T   LE+  +           + ++ K +
Sbjct: 2   ENFEKLFNQFLDCVQTLQNALNVSFTEALVETFDNLEQGKIKVENGAPDEKTVEELSKKY 61

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             I+   D +  +  + ++  L  +  ++    A    TP  +  +   L+         
Sbjct: 62  QAIDY--DHISQKDKAQVFTFLTLKAVNDDGLDANQMPTPPAISTVVAMLMHKLLKDE-- 117

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                   + DP  GTG  L   ++ +                G + + E   +    + 
Sbjct: 118 -----KMEIVDPAVGTGNLLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNL--TDVA 167

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
               + D        +     L    +        +S+ P G     +     + H    
Sbjct: 168 AHLNDIDIE------LYCQDALMP--WMCPNADAIVSDLPIGYYPIDENAKNFENHAKKG 219

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                      S   +L +  +   L+      G A +V+ +S L    +G   ++   W
Sbjct: 220 H----------SFAHLLLIEQIIKNLKSD----GYAFLVVPNSIL----SGKIGADFMPW 261

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEG 438
           L +   ++AIV LP D+F        + +  N  +E +  +V L  +++     S+    
Sbjct: 262 LTKKVYLKAIVELPDDMFRNKFNQKSILVFQNHGSEAKPSEVLLTKLDSLKKEQSLIQFN 321

Query: 439 KKRRII 444
            K    
Sbjct: 322 VKLNEW 327


>gi|298531139|ref|ZP_07018540.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509162|gb|EFI33067.1| N-6 DNA methylase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 489

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 101/335 (30%), Gaps = 44/335 (13%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
               +  ++  +S   K +F+     +         L     ++                
Sbjct: 112 VWERIIKFLNGYS--LKDLFDASGQDARSDYCRAFNLKGYSIEDLFDASGQD---TRSDY 166

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
              ++ +I  +G      +     P D+    + +L   D      +           CG
Sbjct: 167 CRAFQKIIAEYGDPARVAS----LPVDLSLFMSRVLNIQDKDRVFFA----------GCG 212

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            G  L + +             P    + Q+            + +   +    +  +KN
Sbjct: 213 VGTALLNCVA----------NEPANYVYAQDSIITNALSARVHLALFGCDHS--KVPAKN 260

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
           +       ++    K+F   +S P  G    +    +    +    GRF   L  +    
Sbjct: 261 LLLEPDFIEEDKNLKKFDCVISLPQMGSVSSR----IAARLRKDPFGRFPETL--VGRRF 314

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L H+A+ L       GR AI+L +  L    +      IR  ++  + ++A++ +P 
Sbjct: 315 TLELAHMAHTLHAMKPSAGRGAILLPARFLSIESSHL----IRAHIVSVNYVDAVITIPR 370

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
                      + +L   K +E    V  ++ +  
Sbjct: 371 SYIPSLTFDMAVLVLKMDKQDE---NVLFVDNSSF 402


>gi|148381041|ref|YP_001255582.1| modification methylase family protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|148290525|emb|CAL84653.1| putative DNA modification methyltransferase [Clostridium botulinum
           A str. ATCC 3502]
          Length = 581

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y   I+
Sbjct: 6   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 56

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 57  -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 107

Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270
                    ++ +    + I        + +            + +  ++I  L      
Sbjct: 108 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 166

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               N ++   L +D+     F   + NPP+         +V+KE+      R+G     
Sbjct: 167 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKERYGYIYKD 219

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             D S  F ++  N      N   +   + S   + +         +R++L EN  I  I
Sbjct: 220 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 271

Query: 391 VALPTDLFFR------TNIATYLWILSNR 413
           +      F+         I   +  +   
Sbjct: 272 LD-----FYGIRPFKAVGIDPAIIFIDRN 295


>gi|148657052|ref|YP_001277257.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
 gi|148569162|gb|ABQ91307.1| N-6 DNA methylase [Roseiflexus sp. RS-1]
          Length = 926

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 90/285 (31%), Gaps = 30/285 (10%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +G E  +    + TP  +       +        +  P   R + D TCG G FL   + 
Sbjct: 296 YGKEKRKKLGFYDTPLYLTRRILHNI------PVEFLPPKQRIVVDMTCGWGSFLIAGVE 349

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            ++               G +++  T  +                + S +I         
Sbjct: 350 RLSQLSDMRDQSLRDHIIGNDIDIFTAQLAGL------GLLLATSEDSWHIDHEDARQWS 403

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                     + NPPF  + ++ +   +     G+  R         + +  +L      
Sbjct: 404 WIDMHTPGIIVGNPPFRGRRDQPESLEDLMPTKGKRTRV--------EAANAYLDLAIR- 454

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
                  GG  A+++  S L    A +G  ++RR LLE+  +  I  LP  +F   +   
Sbjct: 455 ---NVRTGGYIAMIMPQSFLV---AEAGP-DVRRNLLESCDVTEIWELPGRMF--PDAKV 505

Query: 406 YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450
              +L  RK   +R  V  I   ++  S     KK  I       
Sbjct: 506 QPIVLFARKESGKRKTVFPIRTRNVQKSTIEAFKKSGIFTASNIA 550


>gi|52550309|gb|AAU84158.1| BpmI endonuclease-methyltransferase fusion protein type IIG
           [uncultured archaeon GZfos37D1]
          Length = 951

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 106/368 (28%), Gaps = 99/368 (26%)

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRR---- 165
            IF+ F+       L     +L  I +   +         +   ++ N+YE  + +    
Sbjct: 286 GIFD-FESDGITPALTIDDKILKTIIQALYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 344

Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
                       EV +    + TP+ +V       +    A           + DP CG+
Sbjct: 345 TAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVKNTVGKLIAGKTPEEIAEIKILDPACGS 404

Query: 217 GGFLTDAMNHVADCG----------------------------SHHKIPPILVPHGQELE 248
           G FL  A  ++                                   K   +    G +++
Sbjct: 405 GSFLIGAYTYLLRYHLDWYVSNNPKKHKDVVFQVRENEWYLTTEEKKRILLNNIFGVDID 464

Query: 249 PETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGSTLSKDLFTGKR-- 291
           P+   V    +L++ LE +                  +L  NI+ G++L    F   +  
Sbjct: 465 PQAVEVTKLSLLLKVLEHESRESIDQQMKLGLEGVLPNLGDNIKCGNSLIGPDFYDMQQQ 524

Query: 292 --------------------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                                           F   + NPP+G  + + +    K++   
Sbjct: 525 ETLFDEAEMRRVNVFDWDDNVKGFGEIMKRGGFDCVIGNPPYGAFFSEIEKTYIKQNFEA 584

Query: 320 ELGRFGPGLPKISDGSML-----FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
              R+   +  +     L     ++  +  +L L    G     ++S+S  F      GE
Sbjct: 585 YKYRYDSYIYFVEKAINLTKIDGWISFITPELWLKLENGAPLRELISNSAGFEKLRIFGE 644

Query: 375 SEIRRWLL 382
               + ++
Sbjct: 645 KVFSKAVV 652


>gi|304312533|ref|YP_003812131.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
 gi|301798266|emb|CBL46488.1| Type I restriction-modification system, methyltransferase subunit
           [gamma proteobacterium HdN1]
          Length = 674

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 84/293 (28%), Gaps = 67/293 (22%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV--- 227
                 + TP +V  +A  +L           P     + D + GTG FL     H+   
Sbjct: 315 DGREGRYPTPLNVAEMAVEML----------DPQPGERIMDCSSGTGTFLAMTAAHIFKK 364

Query: 228 ----------ADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRR 270
                            +               G +++P         +L          
Sbjct: 365 KLAAMGTTPDEATNEQIRQAQNETAAWAASNALGCDIDPFLAVASRMNLLFTTGNPGRVF 424

Query: 271 DLSKNIQQGSTL-----SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE----- 320
            +         L     ++           L NP F  K     +++   +  G+     
Sbjct: 425 RIDARTFPDGDLDGIEAARPAMPLASMDMILLNPWFSTKDVVADESILSRYDLGKVWNKE 484

Query: 321 ---LGR------FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
               G          G+P      +LF+    + ++    G GR  I+L    L      
Sbjct: 485 QGGDGYVNSGAINTGGVPP----EVLFIERALDWVKP---GTGRIGILLPDGVL----GN 533

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF------FR-TNIATYLWILSNRKTEE 417
            G+  IR W+L +  + A V LP + F      +  T     L +L  R  EE
Sbjct: 534 PGDEYIRWWILRHCEVLASVDLPVEPFKVTVKEYGLTPALPSLLVLRRRSQEE 586


>gi|331088991|ref|ZP_08337898.1| hypothetical protein HMPREF1025_01481 [Lachnospiraceae bacterium
            3_1_46FAA]
 gi|330406443|gb|EGG85956.1| hypothetical protein HMPREF1025_01481 [Lachnospiraceae bacterium
            3_1_46FAA]
          Length = 2416

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 103/359 (28%), Gaps = 70/359 (19%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYE 160
              F +N  AI    + +  + +A  E+  +L K       S      +         +YE
Sbjct: 1131 EKFRNNIAAIQTLHELEIENRLATPEEQEILSKYVGWGGLSQAFDENNAAWADEFIELYE 1190

Query: 161  HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +L    + + +      F TP  V+     +L            G    + +P+CGTG F
Sbjct: 1191 NLSPEEYRAAMESTLTAFYTPPVVIKAMYGVL-----DRLGYEKG---NMLEPSCGTGNF 1242

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                       G   +       +G EL+  T  +              +      I   
Sbjct: 1243 F----------GLIPEKMAGSKLYGVELDDLTGRIAK------------QLYQKATIAVQ 1280

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                        F   L N PFG     D    +++    +                 F 
Sbjct: 1281 -GFEDTKLPDDHFDVVLGNVPFGDFRVNDSRYEQQKFLIHDY----------------FF 1323

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
                +K++     GG   ++ S   +          E+R+++ +   +   + LP + F 
Sbjct: 1324 AKALDKVK----AGGVVMLLTSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFK 1374

Query: 399  --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                T + + + IL        R +V  I    +       G        +    +L  
Sbjct: 1375 ANAGTEVTSDILILKK------RDRVMEIEPEWVHLDTDENGITMNRYFVEHPEMVLGT 1427


>gi|288920049|ref|ZP_06414368.1| conserved hypothetical protein [Frankia sp. EUN1f]
 gi|288348532|gb|EFC82790.1| conserved hypothetical protein [Frankia sp. EUN1f]
          Length = 1196

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 93/292 (31%), Gaps = 71/292 (24%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +        R + ++Y+ L      +V +      TP  V      L L P    F   
Sbjct: 172 HDFTDPAWDTRFLGDLYQDL----SEDVRKKYALLQTPEFVEEFILDLTLTPAIEEFG-- 225

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV----ADCGSHHKIPPILVP-----HGQELEPETHA 253
              +  L DPTCG+G FL  A + +     +      +   +       HG ++ P   A
Sbjct: 226 -YDVVKLIDPTCGSGHFLLGAFHRLLAEWENNAPDRDVFERVRLALDAIHGVDINPYAVA 284

Query: 254 VCVAGML--------IRRLESDPRRDLSKNIQQGSTLSK--------------------- 284
           +    ++        IR L +     L+ ++  G +L K                     
Sbjct: 285 ITRFRLVVEVLRAAGIRTLAAAVGYQLALHVAVGDSLIKGRQLKIFDDARDNLAEFSYVT 344

Query: 285 -------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                  DL    R+H  + NPP+    +   + + ++      G +   +P        
Sbjct: 345 EDVREHSDLLKEDRYHVVVGNPPYITVKDASLNKMYRKLYGACGGSYALSVP-------- 396

Query: 338 FLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           F+       +     G   GR   + ++S +          E  + L+++ L
Sbjct: 397 FMQRFFELAKEADKEGRGAGRVGQITANSFMKR--------EFGKKLIQDFL 440


>gi|266621005|ref|ZP_06113940.1| putative type I restriction modification system related protein
           [Clostridium hathewayi DSM 13479]
 gi|288867321|gb|EFC99619.1| putative type I restriction modification system related protein
           [Clostridium hathewayi DSM 13479]
          Length = 300

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 55/174 (31%), Gaps = 19/174 (10%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +  ++  L        +  A  F TP  V  L   ++        ++   +  +
Sbjct: 135 NQEQDFLGKMFMRL-----DLGNRSAGQFFTPYHVCELMAEVVATNALEKIEQYGYI--S 187

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIRRL 264
           + DP CG G  L   ++ +     H + P           Q+++     +C   + +  L
Sbjct: 188 INDPCCGAGATLIAGVHVIRKQLEHCEPPRNYQNHILVVAQDVDEIVGLMCYIQISLLGL 247

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                      I+ G++++  + T          P +       +  + + +K 
Sbjct: 248 AGF--------IKIGNSITDPISTDDSSEKYWYTPMYFSDVWSTRRMLRQINKL 293


>gi|113477986|ref|YP_724047.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Trichodesmium erythraeum IMS101]
 gi|110169034|gb|ABG53574.1| Type I restriction-modification system methyltransferase
           subunit-like [Trichodesmium erythraeum IMS101]
          Length = 416

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 49/287 (17%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           ++ ++  +      TP +++    +  L       K +P     + DP CG+G FL  A 
Sbjct: 13  QYSAQQRKLLGVHYTPDNLIDYIVSHTLFSYLDKNKFTPLDKIKILDPACGSGLFLLKAF 72

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR------RLESDPRRDLSKN--I 276
           + +                   LE   + V +    +       + +++       N  I
Sbjct: 73  DLLCSLWQKQFGQLKPQDIRHILENNLYGVDIENNAVHEAKKQLKNKANLLGVKEVNIPI 132

Query: 277 QQGSTL-------------SKDL-----------FTGKRFHYCLSNPPFGKKWEKDKDAV 312
            QG  L             S              F    F   + NPP+     + ++  
Sbjct: 133 FQGDALLHSFTDYQINLLFSNPKIFNWQENFPKVFAEGGFDCIIGNPPYI----RIQNLQ 188

Query: 313 EKEHKNGELGRFGPGLPKIS-DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
            KE +N  + R      +   D + LF+      L+      G+ + ++S+  L    A 
Sbjct: 189 PKERRNHYIER--YQTARGHFDIAGLFIELGHYLLKPQ----GQLSYIISNKLLTTQGA- 241

Query: 372 SGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEE 417
                +R ++ ++  +  I+ L  T LF    + T + IL  +    
Sbjct: 242 ---KALRTYIFKHYSLIEIIDLGDTKLFEAAILPT-ILILEKQIPAS 284


>gi|313667120|gb|ADR73010.1| RM.BsgI [Lysinibacillus sphaericus]
          Length = 1035

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/470 (12%), Positives = 120/470 (25%), Gaps = 134/470 (28%)

Query: 38  FTLLRRLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
              +R +E     ++     + E +      ++  E                        
Sbjct: 252 LIFIRIIEDRNIESKEFLKEIVEMHEQDNSISVKNEL----------------------D 289

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN--FSGIELHPDTVPD 152
                L             +F D  F +    L    +L  I  N  +     +   +  
Sbjct: 290 KLCIELNKKFNGL------VFHDHTFVN--EALIDNEILIVIIDNLYYPKSPYNFRLIKP 341

Query: 153 RVMSNIYEHLIRR------------FGSEVSEGAEDFMTPRDVVHLATA-LLLDPDDALF 199
            ++  I+E  +                    +    + TP  +V       L        
Sbjct: 342 EILGRIFEQFLGEKIEIIDGKITLGLKDINKKSGGVYYTPSYIVEKIVENTLSKKLHNDI 401

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC----------------------------- 230
                    + D  CG+G FL  +  ++ D                              
Sbjct: 402 TIENLEQIKIADIACGSGSFLISSYKYLIDKFQYIYSKCSEADVQTLISNNLVFIDNGKL 461

Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES--------DPRRDLSKNIQQG 279
                H K        G +++ +   V    + I  LE             DL+ NI+ G
Sbjct: 462 MLTMEHKKGILQQNIFGVDIDSQAIQVAKLSLYITMLEEGYREGTLRPILPDLNDNIKHG 521

Query: 280 STLSK--------------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
           +++                            D+     F   L NPP+ +    ++   +
Sbjct: 522 NSIIDNEILFEDDINYDIDATLPFDWEYAFPDIIDNGGFDVILGNPPYIRIQIFEELYGK 581

Query: 314 K-----EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 + K     +F        D  ++F+    + L      G    IV++       
Sbjct: 582 DVVNYLKKKYVSAEKFNF------DIYVVFIEKALSLLNDQGILGY---IVMNKFF---- 628

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEE 417
               GE ++R  +    L+  I+    + +F      T + IL     +E
Sbjct: 629 TTQYGE-KLRELITSQKLLYEIIDFGINEIFNNATTYTCILILDKTNPDE 677


>gi|317013141|gb|ADU83749.1| putative adenine specific DNA methyltransferase [Helicobacter
           pylori Lithuania75]
          Length = 839

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 110/327 (33%), Gaps = 34/327 (10%)

Query: 42  RRLECAL--EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97
           + L+ AL     +  V   +  F     +  SF   +  +F  T  YSL  + L     +
Sbjct: 173 KYLKDALIKYQEKVQVSSIFNNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHPFEK 231

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPD 152
            NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++           
Sbjct: 232 INLDNVRSSIPENFAVIREMADFLKKLDAIKEIQWLLNEILNSINHVDMDSIIKDLNDDK 291

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204
               + YE  +  +  ++ E    + TP  VV      L       FK++P         
Sbjct: 292 DPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSTLDN 351

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254
               L D   GTG FL +A     +                   +   +G E     +A+
Sbjct: 352 ENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAI 411

Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
               +     +  +   + + +  I   +TL +     +   +    P F K+ +  ++ 
Sbjct: 412 AHLNLSQAFKQEFKKPLKENDALQIILTNTLIQP---SEIAAHRGLQPIFEKELKSAQEI 468

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338
            + E      G         ++G   +
Sbjct: 469 KKDEKILIITGNPPYSGASSNEGLFEW 495


>gi|116629899|ref|YP_815071.1| adenine-specific DNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238853656|ref|ZP_04644024.1| adenine-specific DNA methylase [Lactobacillus gasseri 202-4]
 gi|282851515|ref|ZP_06260880.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
 gi|311110466|ref|ZP_07711863.1| putative modification methylase [Lactobacillus gasseri MV-22]
 gi|116095481|gb|ABJ60633.1| Adenine-specific DNA methylase [Lactobacillus gasseri ATCC 33323]
 gi|238833694|gb|EEQ25963.1| adenine-specific DNA methylase [Lactobacillus gasseri 202-4]
 gi|282557483|gb|EFB63080.1| N-6 DNA Methylase [Lactobacillus gasseri 224-1]
 gi|311065620|gb|EFQ45960.1| putative modification methylase [Lactobacillus gasseri MV-22]
          Length = 333

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 119/354 (33%), Gaps = 49/354 (13%)

Query: 98  NNLESYIA-SFSDNAKAIFEDFDFSSTIARLE----KAGLLYKICKNFSGIELHPDTVPD 152
            +L+  +  SFS      F+  +  +   ++E        + ++ + +  ++   D +P 
Sbjct: 16  EHLQKALNVSFSSALTETFD--NLENGKIKVESGAPDKETVAELTEEYRQLDY--DNLPR 71

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +   I+  L  +  ++ +       TP  +  +   +         +      +T+ DP
Sbjct: 72  ALKVQIFTLLTLKAVTQDASDYNLMPTPSVIATIIALIW-------QRIVSKGKKTVVDP 124

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             GTG  L   +  +           ++    +E         +  +       +  +  
Sbjct: 125 AIGTGNLLYSVIRQLIQENHSQNNYKLIGIDNEE--------ALLDLADIGAHLEDLKI- 175

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             ++     L  D +  ++    +S+ P G  +  D +A   E+   E   F        
Sbjct: 176 --DLYCQDAL--DPWMIEKADIVVSDVPVGY-YPLDNNAERFENHAKEGHSFAHT----- 225

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
               LF+  + N L+         A ++    LF G    G +E   WL +   I+AIV 
Sbjct: 226 ----LFIEQIVNNLKRDG-----FAFLVVPRLLFTG---KGSTEFMTWLAKKVNIQAIVD 273

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           LP D+F        + +  N      + +V +  +++     S+     K    
Sbjct: 274 LPDDMFSSQIQQKSILVFQNHGEHAVKREVLVAKLDSLKKPESLVAFNMKLNDW 327


>gi|317011755|gb|ADU85502.1| putative adenine specific DNA methyltransferase protein 1
           [Helicobacter pylori SouthAfrica7]
          Length = 812

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 106/327 (32%), Gaps = 34/327 (10%)

Query: 42  RRLECALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTR 97
           + L+ AL   +    V   +  F     +  SF   +  +F  T  YSL  + L     +
Sbjct: 174 KYLKDALVAYQKNEQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFLAKLNHPFEK 232

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPD 152
            NL++  +S   N   I E  DF   +  +++   LL +I    + +++           
Sbjct: 233 INLDNVRSSIPKNFAVIREMADFLKNLDGIKEIQWLLDEILSLINHVDMDAILKDLNEDK 292

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------G 204
               + YE  +  +  ++ E    + TP  VV      L       FK++P         
Sbjct: 293 DPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDN 352

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAV 254
               L D   GTG FL +A     +                   +   +G E     +A+
Sbjct: 353 ENIKLLDFATGTGTFLLEAFRKALETRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAI 412

Query: 255 CVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
               +        +   + + +  I   +TL +     +   Y   NP F K+    ++ 
Sbjct: 413 AHLNLSQAFKEEFKRPLKENDALKIVLTNTLIQP---SEIAAYRGLNPIFEKELLSAQEI 469

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLF 338
            + E      G         + G   +
Sbjct: 470 KKDEKILIITGNPPYSGASSNKGLFEW 496


>gi|153931712|ref|YP_001385412.1| modification methylase family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153934578|ref|YP_001388819.1| modification methylase family protein [Clostridium botulinum A str.
           Hall]
 gi|152927756|gb|ABS33256.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152930492|gb|ABS35991.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 577

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y   I+
Sbjct: 2   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 53  -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103

Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270
                    ++ +    + I        + +            + +  ++I  L      
Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               N ++   L +D+     F   + NPP+         +V+KE+      R+G     
Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKERYGYIYKD 215

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             D S  F ++  N      N   +   + S   + +         +R++L EN  I  I
Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267

Query: 391 VALPTDLFFR------TNIATYLWILSNR 413
           +      F+         I   +  +   
Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291


>gi|307322457|ref|ZP_07601810.1| N-6 DNA methylase [Sinorhizobium meliloti AK83]
 gi|306891889|gb|EFN22722.1| N-6 DNA methylase [Sinorhizobium meliloti AK83]
          Length = 679

 Score = 56.1 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 74/242 (30%), Gaps = 53/242 (21%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------------PILVPHGQELEP 249
            + DP CG+G FL  A + +    +                             G ++  
Sbjct: 450 RIVDPACGSGVFLVTAFDFMKAEFTRVNDKIADLRGGARGLFDPDSEILTNNLFGVDVNA 509

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDL------------------FTGK 290
           E+  +    + ++        D    N++ G +L +D                   F   
Sbjct: 510 ESVEIAKLSLWVKTARRGKMLDSLDNNLKVGDSLIEDSNFAYLEHGFSWRTAFPQVFRDG 569

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   L NPP+       +  + K  K     RF      +SD + L+       L+   
Sbjct: 570 GFDIVLGNPPY------VRMELLKAMKPYLEDRFEV----VSDRADLYAYFFERGLK-LL 618

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWI 409
             GGR   + S++    G        +RR+L     IE +V      +F        + +
Sbjct: 619 KPGGRLGYISSATFFKTGSGAP----LRRFLRRKATIEHVVDFGDLQIFDGVTTYPAVLV 674

Query: 410 LS 411
           + 
Sbjct: 675 MR 676


>gi|300856561|ref|YP_003781545.1| putative DNA modification methyltransferase [Clostridium
           ljungdahlii DSM 13528]
 gi|300436676|gb|ADK16443.1| predicted DNA modification methyltransferase [Clostridium
           ljungdahlii DSM 13528]
          Length = 587

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/388 (13%), Positives = 112/388 (28%), Gaps = 65/388 (16%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            SF ++ + I   ++F      +E+         +F         +    +S   E+  +
Sbjct: 2   NSFIEDVEQI---YNFIKKNIDVEEK-------MHFIETYKQKSNMKK-EISFSEEYYKQ 50

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +       TP ++       L+     +          + DP+CG+G  +    
Sbjct: 51  KIM---NGKNGVVYTPPEMAAFMVKNLI----NVNDVIGNPFIKIIDPSCGSGNLICKCF 103

Query: 225 NHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ---GS 280
            ++      + ++         +LE  ++ +    +     + D        I      +
Sbjct: 104 LYLNRIFIKNIEVINSKNNLNLKLEDISYHIVRNNLF--GFDIDETAIKVLKIDLFLISN 161

Query: 281 TLSKDLFT---------GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
             S+  F           +++   + NPP+      D        K      +G      
Sbjct: 162 QFSEKNFQVKDFLVENIDRKYDVFIGNPPYIGHKSVDSSYSYVLRKI-----YGSIYRDK 216

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            D S  F       L+     GG+   V   S  F       E  +R++L+EN  I  I+
Sbjct: 217 GDISYCFFQKSLKCLKE----GGKLVFVT--SRYFCESCSGKE--LRKFLIENTSIYKII 268

Query: 392 ALPTDLFFR------TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIN 445
                 F+         I   +  L   K       +++I         + E  ++    
Sbjct: 269 D-----FYGIRPFKRVGIDPMIIFLVRTK--NWNNNIEII------RPNKIEKNEKNKFL 315

Query: 446 DDQRRQILDIYVSRENGKFSRMLDYRTF 473
           D       +        + S   D   F
Sbjct: 316 DSLFLDKSEKCKKFSISQKSINNDGWVF 343


>gi|271969041|ref|YP_003343237.1| type II DNA modification enzyme [Streptosporangium roseum DSM
           43021]
 gi|270512216|gb|ACZ90494.1| putative type II DNA modification enzyme [Streptosporangium roseum
           DSM 43021]
          Length = 1358

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 43/195 (22%)

Query: 144 ELHPDTVPDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLAT 188
           ++    +    + ++YE L+               +       +    + TP  ++    
Sbjct: 423 DVDFQHLGAEELGSVYESLLELVPHPDLAVPTFELKTVAGNDRKTTGSYYTPSSLIESLL 482

Query: 189 ALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVADCG------------- 231
              LDP      +S         T+ DP CG+G FL  A   +A                
Sbjct: 483 DTALDPVIDEHAKSGVADDLLKITVCDPACGSGHFLVAAARRIAKRYAAMVTGEAEPVPS 542

Query: 232 ---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGST------ 281
                         +G +++P    +    + +  LE   P   L  +I+ G++      
Sbjct: 543 AVQKAMHKVVGTCIYGVDIQPLAAELAKFSLWMESLEPGKPLAFLDAHIKVGNSLLGTTP 602

Query: 282 -LSKDLFTGKRFHYC 295
            L  D    + F   
Sbjct: 603 RLLDDGIPDEAFKAI 617


>gi|312872395|ref|ZP_07732464.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1]
 gi|311091977|gb|EFQ50352.1| conserved hypothetical protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 333

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIR 164
           F++     F++ +      ++E      KI +  +     L  + +   V S+++  L  
Sbjct: 29  FTEALVETFDNLEHKKI--KVEANAPSAKIVELLTKKYANLEYEKLETSVKSHLFYLLTL 86

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +     +  +    TPR +  +   L         K  P   + + DP  G+G  L   +
Sbjct: 87  KAADVDNFNSTQLPTPRILATIVALLW-------SKIVPQTAKEVIDPAIGSGTLLFSLI 139

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + +             V  G + +P    +      + +L  D  R  +          +
Sbjct: 140 DQLRFLNHSKN---SFVLTGIDNDPAMLDLADVRSYLNKLPIDLLRQDA---------LQ 187

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              TGK+    +S+ P G     +        +              S   +LF+  +  
Sbjct: 188 PWLTGKK-DVAVSDVPVGYYPLDNNAKNFDNCQLSGH----------SFAHILFIEQIIK 236

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L       G A +++    L    A    +    WL +   I A+V LP DLF      
Sbjct: 237 NLNPS----GYAFLIVPKMILSGKEAADFMT----WLTKKVNILAVVDLPDDLFANMKYP 288

Query: 405 TYLWILSNRKTEERRGKVQ 423
             + +L N   + +  KV 
Sbjct: 289 KSILVLQNHGQKMQLRKVL 307


>gi|308229538|gb|ADO24185.1| M.AseI [Aquaspirillum serpens]
          Length = 552

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/229 (17%), Positives = 71/229 (31%), Gaps = 38/229 (16%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            S N+  N +  I+          E  +  +  ++ +     Y   +    I+L  + + 
Sbjct: 56  ISRNSVENFDKKISG--------VEKLNQRANKSKKDNHNHEYLAAEFLRKIDLGIEKID 107

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
              M ++YE  +             + TP  +V          D    K       T  D
Sbjct: 108 S--MGDLYESGL---SDSYRNKEGIYYTPSYIV---------NDLLSLKNQLTGDETFCD 153

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G FL  A+                   G + +     +    +L      +    
Sbjct: 154 PCCGSGNFLVRALEI---------GFKPENIFGFDTDHVAVEIAKRRIL------EKTGY 198

Query: 272 LSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
            S NI+    L          + Y  +NPP+GKK E+ +     +   G
Sbjct: 199 KSNNIKCYDFLHLSVSEKAGSYDYIFTNPPWGKKIEQAEKKSISKILKG 247


>gi|289449358|ref|YP_003474758.1| hypothetical protein HMPREF0868_0420 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289183905|gb|ADC90330.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 100

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                    + YE+L+  + S   +   +F TP DV  L T +       + K       
Sbjct: 10  KNHDIDAFGDAYEYLMTMYASNAGKSGGEFFTPADVSELLTRIGTVGKTEINK------- 62

Query: 208 TLYDPTC 214
            +YDP C
Sbjct: 63  -VYDPAC 68


>gi|330904441|gb|EGH35013.1| Type I restriction-modification system methylation subunit
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 61

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GG L  A   + + G   +        GQE      ++    ML+  +        + ++
Sbjct: 1   GGMLIAAKEFIDEHGEDGRK---ANLFGQEFNGTVWSIAKMNMLLHGI-------STADL 50

Query: 277 QQGSTLSKD 285
           Q   TLS  
Sbjct: 51  QNDDTLSDP 59


>gi|307638029|gb|ADN80479.1| Adenine specific DNA methyltransferase [Helicobacter pylori 908]
          Length = 833

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 105/330 (31%), Gaps = 37/330 (11%)

Query: 42  RRLECAL-----EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGST 94
           + L+ AL     +     V   +  F     +  SF   +  +F  T  YSL  + L   
Sbjct: 177 KYLKDALIAYQKDDKDDQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHP 235

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDT 149
             + +L +  +S   N   I E  DF   +  +++   LL +I    + +++        
Sbjct: 236 FEKIDLNNVRSSIPKNFAVIREMADFLKKLDAIKEIQWLLNEILSLINHVDMDSIIKDLN 295

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP------ 203
                  + YE  +  +  ++ E    + TP  VV      L    +  FK++P      
Sbjct: 296 DDKDPYLHFYETFLSAYDPKLREKKGVYCTPDSVVKFIINALDSLLETHFKDAPLGLKSA 355

Query: 204 --GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPET 251
                  L D   GTG FL +A     +                   +   +G E     
Sbjct: 356 LDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAP 415

Query: 252 HAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           +A+    +        +   + +    I   +TL +     +   Y   NP F K+    
Sbjct: 416 YAIAHLNLSQAFKEEFKKPLKENDVLKIILTNTLIQP---SEIVAYRGLNPIFEKELSNA 472

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           +   + E+     G         + G   +
Sbjct: 473 QKIKKNENILIITGNPPYSGASENKGLFEW 502


>gi|255325531|ref|ZP_05366633.1| type I restriction enzyme EcoprrI M protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297469|gb|EET76784.1| type I restriction enzyme EcoprrI M protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 151

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 44/152 (28%), Gaps = 21/152 (13%)

Query: 1   MTEFTGSAA--SLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECAL---------- 48
           M+  T  A   SL   +   A DL G     DF   +L     R L   L          
Sbjct: 1   MSPSTKKAQRDSLHKTLDSIANDLRGKVDGWDFKAYVLGTLFYRYLCDHLVHIINTEQHD 60

Query: 49  ----EPTRSAVREKYLAFGGSNI-DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
               E   S + ++   F   N   +  +  +    F   S +      + +    L+  
Sbjct: 61  AGDSEFDYSELSDEVAEFERENYTQMVGYYILPSQLF---STFVQGAADNVDLNIELDKA 117

Query: 104 IASFSDNAKAIFEDFDFSSTIARLE-KAGLLY 134
           + +   ++       DF       +  +  L 
Sbjct: 118 LRAVEASSADAESADDFKGLFQDFDVNSNKLG 149


>gi|317474809|ref|ZP_07934083.1| hypothetical protein HMPREF1016_01062 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316909490|gb|EFV31170.1| hypothetical protein HMPREF1016_01062 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 784

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 110/330 (33%), Gaps = 42/330 (12%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           AG L++     + + L  +  P+ ++   Y            +    + TP  +      
Sbjct: 211 AGRLFEEANYIAQMPLQYELFPNDIIKYDY----------NPKLVGAYFTPSYISRTIVE 260

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
                 D           T++DP CG G FL +A+  +     +      +   G ++  
Sbjct: 261 ESFSNFD-----INSTHITIFDPACGAGEFLVEALRQLK----YKGYKGQIEVIGWDIAQ 311

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
              A+ +A  ++   + +    L+ ++ + ++L  +        +   NPP+        
Sbjct: 312 T--ALDMANYVLTFEKREWCTQLTVSLYKRNSLQTEWPNN--LDFIFMNPPYI------S 361

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                E       R   G     + + +F    A+KL       G    ++ SS L +  
Sbjct: 362 WEQMDEETRELACRILGGNKGRPNLAAVFYYLAAHKLSHK----GTLGCLMPSSMLNSIS 417

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
                +  ++ L    L+  I  L   +F    +   + I S      +    Q++   +
Sbjct: 418 HMEIRNATKKTL--KPLL--IGRLGNYVFENAFVDACVIIASKSDDSRQT---QILWIQN 470

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
           +  +     ++ R ++ +   +I+    + 
Sbjct: 471 VDEATSKALRELRKLHYNT--EIVATSENF 498


>gi|298252319|ref|ZP_06976121.1| protein of unknown function DUF450 [Ktedonobacter racemifer DSM
           44963]
 gi|297545739|gb|EFH79608.1| protein of unknown function DUF450 [Ktedonobacter racemifer DSM
           44963]
          Length = 1019

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/477 (12%), Positives = 125/477 (26%), Gaps = 129/477 (27%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         ++             + F++    + YN+  +            
Sbjct: 236 IFLRICEDRGIEEYERLKFLLKGTSVYKRLCDLFLEAD--ARYNSGLFHFQK------EK 287

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           N +    + + N   + +D      + RL            +         +P  V+  +
Sbjct: 288 NWDEAPDTLTQNL--VIDDKPLKDIVKRL-----------YYPESPYEFSALPADVLGKV 334

Query: 159 YEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +                EV +    + TP  +V       L       K     
Sbjct: 335 YEQFLGKVIRLSPSHKVTVEEKLEVRKAGGVYYTPDFIVTYIVHHTLSKLLEGKKPGARG 394

Query: 206 IRT---LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----------------------- 239
             +   + DP+CG+G FL  A  ++ D      +                          
Sbjct: 395 SASKIKIVDPSCGSGSFLIVAYQYLLDWHRDRYVEDGPEKHRKELFQGPGGQWLLTTQEK 454

Query: 240 -----LVPHGQELEPETHAVCVAGMLIRRLESDPRR---------------DLSKNIQQG 279
                   +G +++ +   V    +L++ LE +  +               DL  NI+ G
Sbjct: 455 KRILLNNIYGVDIDSQAVEVTKLSLLLKVLEGESNQSLTSQLSLFQERALPDLDHNIKCG 514

Query: 280 STLSKDLFTGKR----------------------------------FHYCLSNPPF--GK 303
           ++L    F  +                                   F   + NPP+   +
Sbjct: 515 NSLIDSSFYNEIQQLPLFLDEETQYRINAFDWKSAFPQVFSSDAPGFDAVIGNPPYIRIQ 574

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             ++      + +K                G+    +          N  G    +L   
Sbjct: 575 SLKEWAPLEVEYYKKVYKA--------AGKGNYDLYVVFVEHGLSLLNKHGLLGYILPHK 626

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERR 419
                 +  GE  +R  + E   +  +V      +F +    T L  L+   + +  
Sbjct: 627 FF---NSQYGE-PLRNLIAEGKYLSDVVHFGDKQIFDQATTYTCLLFLNKTGSNQCH 679


>gi|295115656|emb|CBL36503.1| Type I restriction-modification system methyltransferase subunit
           [butyrate-producing bacterium SM4/1]
          Length = 300

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 54/176 (30%), Gaps = 19/176 (10%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   +  ++  L        +  A  F TP  V  L   ++        ++   + 
Sbjct: 133 DQNQEQDFLGKMFMRL-----DLGNRSAGQFFTPYHVCELMAEVVATDVLEKIEQYGYI- 186

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIR 262
            ++ DP CG G  L   ++ +     H   P           Q+++     +C   + + 
Sbjct: 187 -SINDPCCGAGATLIAGVHVIRKQLEHCDPPRNYQNHILVVAQDVDEIVGLMCYIQISLL 245

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
            L           I+ G++++  + T          P +       +  + + +K 
Sbjct: 246 GLAGF--------IKIGNSITDPMSTDDSSENYWYTPMYFSDVWSTRRMLRQINKL 293


>gi|210613247|ref|ZP_03289630.1| hypothetical protein CLONEX_01837 [Clostridium nexile DSM 1787]
 gi|210151246|gb|EEA82254.1| hypothetical protein CLONEX_01837 [Clostridium nexile DSM 1787]
          Length = 2401

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 88/316 (27%), Gaps = 71/316 (22%)

Query: 117  DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTV--PDRVMSNIYEHLI-----R 164
            + +    +  LEK   L      +I   + G    P      +   +N Y  L       
Sbjct: 1108 NMEAIHLLQTLEKEERLATPEEQEILSRYVGWGGIPQAFEESNSSWANEYLELKNTLSPE 1167

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T   V+     +L   ++   K+       + +P+CG G F+    
Sbjct: 1168 EYSAARASTLNAFYTSPTVIRSMYEVL---ENMGLKQGN-----ILEPSCGVGNFMGLIP 1219

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              +               +G EL+P +  +               +   KN        +
Sbjct: 1220 ESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFEE 1256

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG     D+          +                        
Sbjct: 1257 TSYPDSFFDCVIGNVPFGAYQVSDRRYDRHHFMIHDY--------------------FIA 1296

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A+V SS  +           +R+++     +   + LP + F     T
Sbjct: 1297 KSLDLVRPGGVVAVVTSSGTMDKQNPA-----VRQYIANRAELLGAIRLPNNAFQRNANT 1351

Query: 402  NIATYLWILSNRKTEE 417
            ++ + +     R    
Sbjct: 1352 SVVSDILFFQKRDRAS 1367


>gi|168181781|ref|ZP_02616445.1| modification methylase family protein [Clostridium botulinum Bf]
 gi|237796546|ref|YP_002864098.1| modification methylase family protein [Clostridium botulinum Ba4
           str. 657]
 gi|182675026|gb|EDT86987.1| modification methylase family protein [Clostridium botulinum Bf]
 gi|229262264|gb|ACQ53297.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657]
          Length = 577

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y   I+
Sbjct: 2   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 53  -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103

Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270
                    ++ +    + I        + +            + +  ++I  L      
Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               N ++   L +D+     F   + NPP+         +V+KE+      R+G     
Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKERYGYIYKD 215

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             D S  F ++  N      N   +   + S   + +         +R++L EN  I  I
Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267

Query: 391 VALPTDLFFR------TNIATYLWILSNR 413
           +      F+         I   +  +   
Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291


>gi|284053541|ref|ZP_06383751.1| type I restriction-modification system, M subunit, putative
           [Arthrospira platensis str. Paraca]
 gi|291569814|dbj|BAI92086.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1053

 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 82/295 (27%), Gaps = 57/295 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S+IYE  + +      +      TP  +V      +L  D   +         + DP C
Sbjct: 339 ISSIYEEFVDKGKKNADK--GVHYTPGHLVDFILDGVLPWDSDEWDLK------ILDPAC 390

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV-----------PHGQELEPETHAVCVAGMLIRR 263
           G+G FL  A   +            +              G ++ P+   V    + +  
Sbjct: 391 GSGIFLVKAFQRLIYRWKKAYPVEEITAPILQQILAGNLFGVDVNPQAVRVASFSLYLTM 450

Query: 264 LESDPRRDLSKNIQQ----------GSTLSKD------LFTGKRFHYCLSNPPFGKKW-- 305
            +    R   + ++                ++      +    ++   + N P+G+    
Sbjct: 451 CDEIDPRYYWEQVRFPRLRDKRLISADFFQENVEGFRTVHDAGQYDLVIGNAPWGRNTVT 510

Query: 306 -EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              +  A + E            LPK    ++         ++                 
Sbjct: 511 RFANSWARDNEWPITYGNIGPLFLPKS--AALAKAGQPIAMMQPA------------GGL 556

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSNRKTE 416
           +FN    S   E R  L     ++ IV L      LF      T +  +S     
Sbjct: 557 IFN--QISTAQEFRHKLFCEYKVDEIVNLSALRFGLFKDAISPTCIVTMSAELPN 609


>gi|331698571|ref|YP_004334810.1| N-6 DNA methylase [Pseudonocardia dioxanivorans CB1190]
 gi|326953260|gb|AEA26957.1| N-6 DNA methylase [Pseudonocardia dioxanivorans CB1190]
          Length = 585

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 82/294 (27%), Gaps = 66/294 (22%)

Query: 128 EKAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           +   LL  + +    + +EL      +   +  +E L  R+    S       TP DVV 
Sbjct: 101 DDEPLLPGVTERTDAAFVELAERVADEHGHAGAFELLHARYLETDSRRLR--PTPPDVVA 158

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
               L           +P     L DP CGTGG L  A                    G 
Sbjct: 159 AMLEL----------AAPEPGELLLDPACGTGGLLVAA--------------RADRLRGV 194

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           +L P+                               L             + +PP G   
Sbjct: 195 DLAPDRAL--------IAAARLRLARREAASVCADALLPPD-PADLADVVVCDPPVG--- 242

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                      +    G +  G+P  S+  + +      ++      GGR  + + ++  
Sbjct: 243 ----------DRRDLDGPWPYGVPPRSEPELAWAQRCVQRVRP----GGRVVVRMPAAAA 288

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
              R     +     LL +  + A+V               LW+L   +  +RR
Sbjct: 289 SRRRGRRVRAA----LLHDGALRAVV--------GAGHDADLWVLRRPRAGDRR 330


>gi|257080660|ref|ZP_05575021.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis E1Sol]
 gi|256988690|gb|EEU75992.1| type I restriction-modification system methyltransferase subunit
           [Enterococcus faecalis E1Sol]
          Length = 251

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 9/136 (6%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           K F+ +    +     ++  +Y  L        ++ A  F TP +V  L   +    +D 
Sbjct: 69  KLFALLVEALEETTTDILGELYMTL-----EIANKDAGQFFTPYNVARLMAEMNFSENDE 123

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K    ++   Y+P  G G  L    N + + G +      L+    +++    ++   
Sbjct: 124 QLKNGKPVV--FYEPCIGGGVTLIALANVMREKGYN--YQRNLIALCGDIDGNVLSMAYV 179

Query: 258 GMLIRRLESDPRRDLS 273
              +  +++   R  +
Sbjct: 180 QCSLLGIDAIFERKNA 195


>gi|330990456|ref|ZP_08314415.1| putative helicase [Gluconacetobacter sp. SXCC-1]
 gi|329762493|gb|EGG78978.1| putative helicase [Gluconacetobacter sp. SXCC-1]
          Length = 1347

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 107/376 (28%), Gaps = 47/376 (12%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLI 163
               S   + + +  D  S     ++    Y    +  SGI+         V+  +Y+   
Sbjct: 677  NPMSRAMQTVLDALDKHSLHKETDRLEAFYASVRERASGIDTSYGRQK--VIKELYDGFF 734

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTD 222
            ++    + +      TP +VV      + D  ++ F ++ G     + DP  GTG F+T 
Sbjct: 735  QKAFPRLKDRLGIVYTPIEVVDFIIRSINDVLESEFGQTLGSKGVHIMDPFTGTGTFITR 794

Query: 223  AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGST 281
             +                  H  E+    + +    +     +  D   +  + I    T
Sbjct: 795  LLQSGLITKEQMLHKYRQELHANEIVLLAYYIASINIEATFSDLMDGNYEPFEGICLTDT 854

Query: 282  LS------------KD------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                          +D                + NPP+    E   D  +         R
Sbjct: 855  FRLNEPHDLVSSTLEDNNRRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVAYPTLDAR 914

Query: 324  FGPGLPKIS---DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                  + S   +   L+  ++             G    V ++  L    A      +R
Sbjct: 915  IAETYAERSTATNKRALYDSYIRAIRWSSDRIGDCGVIGFVTNAGFLDANTANG----LR 970

Query: 379  RWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQ 423
            + L E      +  L  +              +F   +     + ++      +++G++ 
Sbjct: 971  QCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISLMVKNPNAKKQGRIL 1030

Query: 424  LINATDLWTSIRNEGK 439
              +  D  T  +   +
Sbjct: 1031 FYDIGDYLTREQKLKR 1046


>gi|309776103|ref|ZP_07671094.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916054|gb|EFP61803.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 248

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 11/121 (9%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +     +   ++  I E L     S  S  +  F+TP  V      + +   D       
Sbjct: 79  DALEANMDQDLLGRICERL-----SMTSFRSGQFLTPYPVSKFMAEINISKLD---TSKQ 130

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             I+T+ DP CGTG  L  A N + + G         + + Q+++      C   + ++ 
Sbjct: 131 KDIQTIADPCCGTGVMLIAAANVIREKGI---PLRNYMMYAQDIDKTMALSCYVQLALQG 187

Query: 264 L 264
           +
Sbjct: 188 V 188


>gi|170756850|ref|YP_001782725.1| modification methylase family protein [Clostridium botulinum B1
           str. Okra]
 gi|169122062|gb|ACA45898.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 577

 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 102/333 (30%), Gaps = 67/333 (20%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y   I+
Sbjct: 2   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 53  -----GIKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103

Query: 225 NHVADCGSHH------------------KIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            ++ +    +                  K       +G +++     + +  +       
Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILMMDLF-----Y 158

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   N ++   L +D+     F   + NPP+         +V+KE+     G++G 
Sbjct: 159 LTGYYNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKGKYGY 211

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                 D S  F ++  N      N   +   + S   + +         +R++L EN  
Sbjct: 212 VYKDKGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCN 263

Query: 387 IEAIVALPTDLFFR------TNIATYLWILSNR 413
           I  I+      F+         I   +  +   
Sbjct: 264 IYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291


>gi|258652906|ref|YP_003202062.1| type I restriction-modification system methyltransferase
           subunit-like protein [Nakamurella multipartita DSM
           44233]
 gi|258556131|gb|ACV79073.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Nakamurella multipartita DSM
           44233]
          Length = 257

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++  +Y  L         +    F TP D+  L  A+            P     +++P
Sbjct: 127 DLLGPVYSELRG---DRSRQRTGAFYTPPDLSALLAAM----------TGPRPGDRVFEP 173

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CGTGG +  A+  + +                +L+P   A+    M    +        
Sbjct: 174 ACGTGGMVLAAVRSMRERDLDPNS-CTWTL--NDLDPVAVALASVNMAAHGV-------R 223

Query: 273 SKNIQQGSTLSK 284
           + +++ G  L++
Sbjct: 224 TVHLRCGDALAQ 235


>gi|293397480|ref|ZP_06641732.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291420059|gb|EFE93336.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 265

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 18/165 (10%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
           ++ +TI R EKA    ++ + +S + +  D      + +++  L        S+    F 
Sbjct: 95  EYMATIQRYEKADA-QRMAELYSWLVIGLDHDMGDFLGSLFMEL-----ELGSDNIGQFF 148

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +  L   L+     A  +  P +  TL +PTCG GG +      +   G + +   
Sbjct: 149 TPFHLSELMAGLVAGDRLAALESEPYI--TLSEPTCGAGGMVIAFAKIMLARGYNPQTQL 206

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                  +++P    +C   + +  +           +  G++L+
Sbjct: 207 R--ADCVDIDPVAARMCYIQLSLLGI--------PARVVIGNSLT 241


>gi|303256816|ref|ZP_07342830.1| helicase domain protein [Burkholderiales bacterium 1_1_47]
 gi|302860307|gb|EFL83384.1| helicase domain protein [Burkholderiales bacterium 1_1_47]
          Length = 1579

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/451 (13%), Positives = 132/451 (29%), Gaps = 57/451 (12%)

Query: 165  RFG-SEVSEGAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            +F   E+ +      TP  VV      + D                + DP  GTG FLT 
Sbjct: 813  KFAFPEMRDKLGIIYTPVPVVDFINHSVADILQKEFGTTIASPNVHILDPFTGTGTFLTR 872

Query: 223  AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGS 280
             M                  H  E+ P T+ +    +     +    ++   N  +    
Sbjct: 873  LMQSGLIPADKLSEKFKNDIHAHEILPLTYYIASINLEATYYDLVSNQEYEPNPVMIWTD 932

Query: 281  TLSKD------------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            T +                              + NPP+    E+  D  E E  +    
Sbjct: 933  TFADHDAKTLFSTSLAENNARLAKTEELDIRVIVGNPPYSVGQERQADNNENERYDKLDS 992

Query: 323  RFG---PGLPKISDGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
            R      G   ++  + L+  ++             G    V ++  + +  A      +
Sbjct: 993  RISKTYAGRTDVTLKNSLYDSYIRAYRWASDRIKDKGVIGFVTNAGWIESNSADG----M 1048

Query: 378  RRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKV 422
            R+ + E      I  L  +              +F   +     + +L     ++ +GK+
Sbjct: 1049 RKCMSEEFNSIYIYHLKGNQRTSGERSRKEGGKVFGEGSRAPVAIVLLVKNPDDKEKGKI 1108

Query: 423  QLINATDLWTSIRNEGK--KRRIINDDQRRQIL----DIYVSRENGKFSRMLDYRTFGYR 476
                  D  T      +  K + I++ Q ++I       ++++ +  F+  +      ++
Sbjct: 1109 YFHAVDDYLTREEKLNQLVKAKSISNIQWQRIYPDKHGDWLNQRDDSFAHFIKIDATKFK 1168

Query: 477  RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
            + K        F     G+        +             ++K   + +      +  V
Sbjct: 1169 KQKTEV---SVFPPSVNGVKTDRDAWVYNSAVIALSESVRRLIKGYEETVK--LSNDMSV 1223

Query: 537  KESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
            +E++K  +    ++  +K    A I    +K
Sbjct: 1224 EEAVKQVKLPWTRLLKTKLEKNALIIFDSKK 1254


>gi|240850389|ref|YP_002971783.1| helicase/methyltransferase [Bartonella grahamii as4aup]
 gi|240267512|gb|ACS51100.1| helicase/methyltransferase [Bartonella grahamii as4aup]
          Length = 1654

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/394 (13%), Positives = 103/394 (26%), Gaps = 54/394 (13%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             + S   + I  + D ++     ++    Y   K  +     P    + ++  +YE    
Sbjct: 815  NAISQAMERILTELDKTNIEEESKELQEFYNSVKLRASGITSPLARQNLII-TLYESFFA 873

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP +VV      + D     F +S G    ++ DP  GTG F+T  
Sbjct: 874  KAFKKTTDKLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 933

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282
            +          +       H  E+    + +    +               K+I    T 
Sbjct: 934  LQSKLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGNYIPFKHIGLADTF 993

Query: 283  SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                                +            NPP+    +   D  +         R 
Sbjct: 994  RMLEEKNLLQKLFKENSEYLEHQKNLNIEVIFGNPPYSVGQKSANDNAKNTPYPILDDRI 1053

Query: 325  GPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES---- 375
                   S  S++  ++                 G    V  S  +      S       
Sbjct: 1054 RETYAAQSKASLMRNLYDSYIRAIRWASDRIADAGVIGFVSGSGYIEKSTMDSLRKSLAK 1113

Query: 376  ------------EIRRWLLENDLIEAIVALPTDLFFR---TNIATYLWILSNRKTEERRG 420
                        +IR+ +L N           ++F     T IA  L+I     +     
Sbjct: 1114 EFTGIYVLNLRGDIRKNMLSNGA----AQEGENVFGNGSMTGIAITLFI--KNPSVSEEC 1167

Query: 421  KVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
            K+   +  +  T  +   + +          I  
Sbjct: 1168 KIYYHDIGNNLTREKKLERLQYF---GSIDGITR 1198


>gi|57118040|gb|AAW34165.1| unknown [Campylobacter jejuni]
          Length = 556

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLND--------------PTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L      S  S IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K     +     V+  +  D +      G    + ND
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507

Query: 447 DQRRQ 451
            +  +
Sbjct: 508 FRINE 512


>gi|300777243|ref|ZP_07087101.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300502753|gb|EFK33893.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1809

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 103/341 (30%), Gaps = 70/341 (20%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  I +                ++     L++    +  +               F TP
Sbjct: 49  VLNPIAEEIDINHWRKTEHDLFPITQELHQLLKENSQDEKQYRRYVDSMKSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V+ + + ++ D +          I    +P+ G G F+     +     ++ K     
Sbjct: 109 PQVIDVISQVMCDNNLH--------IDKFLEPSAGIGSFVQSFAGNETKVTAYEKDVLTG 160

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
               Q     T  +      I   E +    ++ NI  G T                   
Sbjct: 161 KILKQLYPESTVRISGFEE-ISEKEQNSYDVVASNIPFGDT-----------------SV 202

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F   + + KD+ + +        F             FL     K       GG  A + 
Sbjct: 203 FDLSYSRSKDSAKVQAARSIHNYF-------------FL-----KGNDMLRDGGLQAFIT 244

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417
           S   L + +       IRR LLEN+ + +++ LP +LF     T + + L IL     ++
Sbjct: 245 SQGILNSAKNEP----IRRALLENNDLVSVIRLPNNLFTDYAGTEVGSDLIILQKNTAKQ 300

Query: 418 RRGKVQLINATDLWTSIRNE--GKKRRIINDDQRRQILDIY 456
                 L    DL+        G     + D+   +I+  +
Sbjct: 301 N-----LTEREDLFCQSTKTGYGTPSNALLDES-EKIVHTH 335


>gi|254297091|ref|ZP_04964544.1| putative type II DNA modification enzyme [Burkholderia pseudomallei
           406e]
 gi|157806923|gb|EDO84093.1| putative type II DNA modification enzyme [Burkholderia pseudomallei
           406e]
          Length = 1631

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 54/170 (31%), Gaps = 40/170 (23%)

Query: 154 VMSNIYEHLIR------------RFGS------EVSEGAEDFMTPRDVVHLATALLLDP- 194
            + ++YE L+             RF +         + +  + TP  +V       L+P 
Sbjct: 421 ELGSVYESLLELVPQVAQDGRVFRFANAEQSQGNARKTSGSYYTPDPLVQELLDSALEPV 480

Query: 195 DDALFKESPGM-----IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------- 241
                  +          T+ DP CG+G FL  A   +A+  +  +              
Sbjct: 481 IHQRIAGATDPQAALLSITICDPACGSGHFLLAAARRLANHLAQSRAQGTPSGSDYRHAL 540

Query: 242 -------PHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283
                   +G +L P    +    + +  +  + P   L  ++Q G  L 
Sbjct: 541 RDVISHCIYGVDLNPLALELARMSLWLEAMTPEKPLGFLDHHLQCGDALL 590


>gi|326335113|ref|ZP_08201310.1| N-6 DNA methylase superfamily protein [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692643|gb|EGD34585.1| N-6 DNA methylase superfamily protein [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 966

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 106/372 (28%), Gaps = 61/372 (16%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS-FSDNA- 111
              E+ +   G+ +  + + +  G + +N        L       +L S +   F+ N  
Sbjct: 209 KYLEERMDNNGNKLLSDKYFQPYGSTSFN------EVLRQKGKFADLLSDLDKHFNGNVF 262

Query: 112 ------KAIFEDFDFSSTIARLE-KAGLLYKICKNFSGIELHPDTVPDR---VMSNIYEH 161
                 +      D S     L      L      F                ++S +YE 
Sbjct: 263 KWKEEEQEELRRLDLSIVAQLLNTDKKDLSSQQLEFGFTNWRYFEFSFIPVELISRLYEE 322

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +     E  +    F TP  +  L     L   +    +       + DP CG+G FL 
Sbjct: 323 FLG----EQKKEKGLFYTPSHLAKLLVDECLPLKNYEDFDI--ANYKILDPACGSGIFLV 376

Query: 222 DAMNHVADCGSHHKIPPILVPHG---------------QELEPETHAVCVA-----GMLI 261
                +                                Q +   + ++ +A       + 
Sbjct: 377 VVFKRLVQIWKLQHNMATPTITDLKKLLKNIYGVDKEQQAIYLTSFSLSLALCNELNPIT 436

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
              E      +  N+      +      K+F   + NPPF +     K  + K +     
Sbjct: 437 ILNELRFDNLIGSNLIHSDFFACKEIENKKFDLVIGNPPFVRGKLDKKQEIWKINDKKIK 496

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                        ++ FL    N L+    GG    I+ SS  L+N  +     + ++ L
Sbjct: 497 I-------PQGQIALGFLTQSFNYLK---EGGLLCLIIKSSGLLYNSTSN----DFKKML 542

Query: 382 LENDLIEAIVAL 393
            EN     I+ L
Sbjct: 543 FENYN---IIQL 551


>gi|268324633|emb|CBH38221.1| conserved hypothetical protein [uncultured archaeon]
          Length = 524

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 45/211 (21%)

Query: 113 AIFEDFDFSSTIARLE-KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRR---- 165
            IF+ FD       L     +L  I ++  +         +   ++ N+YE  + +    
Sbjct: 286 GIFD-FDSDGITPALTIDDKVLKTIIQDLYYPKSPYEFSVLGVEILGNVYEQFLGKVIRL 344

Query: 166 ---------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
                       EV +    + TP+ +V       +    A           + DP CG+
Sbjct: 345 TAGHQAKVETKPEVKKAGGVYYTPQYIVEYIVENTVGKLIAGKTPEEIAPIKILDPACGS 404

Query: 217 GGFLTDAMNHVADCG----------------------------SHHKIPPILVPHGQELE 248
           G FL  A  ++                                +  K   +    G +++
Sbjct: 405 GSFLIGAYTYLLRYHLDWYVSNKPKKYKEAVFQVRENEWYLTTAEKKRILLDNIFGVDID 464

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           P+   V    +L++ LE + R  + + ++ G
Sbjct: 465 PQAVEVTKMSLLLKVLEHESRESIDQQMKLG 495


>gi|317176853|dbj|BAJ54642.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16]
          Length = 833

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSIVKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLNAYDPKLRESKGVYYTPDSVVKFIIDALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     + 
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALEVRKISDGGISTKEDKYQNLLKQFYGFEYLIAPYT 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   NP F  +    ++
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDALKIILTNTLIQP---SEITAYRGLNPIFETELLNAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495


>gi|325284295|ref|YP_004256835.1| helicase domain-containing protein [Deinococcus proteolyticus MRP]
 gi|324316359|gb|ADY27472.1| helicase domain protein [Deinococcus proteolyticus MRP]
          Length = 1719

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 81/258 (31%), Gaps = 53/258 (20%)

Query: 160 EHLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           + ++RR+      G     + TP+ +  L   +L        K+ P   R + DPTCG+G
Sbjct: 103 QDILRRYSGGGGIGESIDAYYTPQALAKLMWQMLEAGMKKPSKKRPYRAR-VLDPTCGSG 161

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L  A  H    G  +     L+          +AV          E    R    +  
Sbjct: 162 ALLIGAPEHTELTGVEYDKDAALIAEKILPHAAIYAVP--------FERFTTRSSVPS-- 211

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                         F   + NPPFG +         +E ++                   
Sbjct: 212 --------------FDMAIMNPPFGNRGNTRDLHEPEESRSERY---------------- 241

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
               +  +     + GG  A VL  + LF G         RR LL   L   ++A+PT  
Sbjct: 242 ----IMRQTIRRVSHGGLIAAVLPLN-LFYGEQHQA---FRRELLATTLPLHLIAVPTGA 293

Query: 398 F--FRTNIATYLWILSNR 413
           F      I T + +L   
Sbjct: 294 FKASGAGITTVIALLRRH 311


>gi|298737016|ref|YP_003729546.1| hypothetical protein HPB8_1525 [Helicobacter pylori B8]
 gi|298356210|emb|CBI67082.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 803

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 104/328 (31%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSAV-----REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           + L+ AL   +  V        +  +    +  E F      +   T    L+ L     
Sbjct: 178 KYLKNALIKYQEKVQVSSIFNNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 235

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S   N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 236 KINLDNVRSSIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDD 295

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 296 KDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALD 355

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 356 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGISTKEEKYQNLLKQFYGFEYLIAPYA 415

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +        +   + + +  I   +TL +     +   Y   +P F K+    ++
Sbjct: 416 IAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP---SEIVAYRGLSPIFEKELSNAQE 472

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E      G         ++G   +
Sbjct: 473 IKKDEKILIITGNPPYSGASSNEGLFEW 500


>gi|15828552|ref|NP_325912.1| restriction-modification enzyme subunit M3 (fragment) [Mycoplasma
           pulmonis UAB CTIP]
 gi|14089494|emb|CAC13254.1| RESTRICTION-MODIFICATION ENZYME SUBUNIT M3 (FRAGMENT) [Mycoplasma
           pulmonis]
          Length = 127

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 6   GSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGS 65
            +   +   +WK  + + G+     +  +I+    L+ L    +       +++ +    
Sbjct: 8   TNLNEIKEKLWKACDQMRGNISSEQYMHIIIAIIFLKTLSDKKDYAYQQFSKEFESESDE 67

Query: 66  N--------IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIA 105
                     D   F+   G  F   SE S   +      + L + I 
Sbjct: 68  KRLKKWDIIKDDLEFLDKYGIKFLVPSEASWEEITKYIGTSELGTKID 115


>gi|317014747|gb|ADU82183.1| adenine specific DNA methyltransferase [Helicobacter pylori
           Gambia94/24]
          Length = 808

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 101/322 (31%), Gaps = 32/322 (9%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL--STLGSTNTRNNLES 102
           +         V   +  F     +  SF   +  +F  T  YSL  + L     + NL++
Sbjct: 187 DQVSSIKDEQVSSIFKNFKEYLYEELSFEDFSD-AFAQTLTYSLFIAKLNHPFEKINLDN 245

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIE----LHPDTVPDRVMSN 157
             +S   N   I E  DF   +  +++   LL +I    + ++    +           +
Sbjct: 246 VRSSIPKNFAVIREMADFLKKLDTIQEIQWLLNEILSLINHVDVGSIIKDLNDDKDPYLH 305

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------GMIRTL 209
            YE  +  +  ++ E    + TP  VV      L       FK++P             L
Sbjct: 306 FYETFLSAYDPKLREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKL 365

Query: 210 YDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAVCVAGM 259
            D   GTG FL +A     +                   +   +G E     +A+    +
Sbjct: 366 LDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNL 425

Query: 260 ---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                   +   + + +  I   +TL +     +       NP F K+    ++  + E+
Sbjct: 426 SQAFKEEFKKPLKDNDALKIILTNTLIQP---SEIIACRGLNPIFEKELSNAQEIKKNEN 482

Query: 317 KNGELGRFGPGLPKISDGSMLF 338
                G         + G   +
Sbjct: 483 ILIITGNPPYSGASENKGLFEW 504


>gi|153810239|ref|ZP_01962907.1| hypothetical protein RUMOBE_00620 [Ruminococcus obeum ATCC 29174]
 gi|149833418|gb|EDM88499.1| hypothetical protein RUMOBE_00620 [Ruminococcus obeum ATCC 29174]
          Length = 1247

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 88/317 (27%), Gaps = 71/317 (22%)

Query: 117  DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTV--PDRVMSNIYEHLI-----R 164
            + +    +  LEK   L      +I   + G    P      +   +N Y  L       
Sbjct: 980  NMEAIHLLQTLEKEERLATPEEQEILSRYVGWGGIPQAFEESNSSWANEYLELKNTLSSE 1039

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T   V+     +L   ++   K+       + +P+CG G F+    
Sbjct: 1040 EYSAARASTLNAFYTSPTVIRSMYEVL---ENMGLKQGN-----ILEPSCGVGNFMGLIP 1091

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              +               +G EL+P +  +               +   KN        +
Sbjct: 1092 ESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFEE 1128

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG     D+          +                        
Sbjct: 1129 TSYPDSFFDCVIGNVPFGAYQVSDRRYDRHHFMIHDY--------------------FIA 1168

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A+V SS  +           +R+++     +   + LP + F     T
Sbjct: 1169 KSLDLVRPGGVVAVVTSSGTMDKQNPA-----VRQYIANRAELLGAIRLPNNAFQRNANT 1223

Query: 402  NIATYLWILSNRKTEER 418
            ++ + +     R     
Sbjct: 1224 SVVSDILFFQKRDRASH 1240


>gi|158523151|ref|YP_001531021.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
 gi|158511977|gb|ABW68944.1| N-6 DNA methylase [Desulfococcus oleovorans Hxd3]
          Length = 746

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 113/383 (29%), Gaps = 67/383 (17%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             L++ LE        +   K+     S    E          Y    + L+ L      
Sbjct: 1   MVLIKYLEDRNVFPSESWFGKFHKGAKSFF--EVLKSGDPEKVY----WLLNFLERKFNG 54

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
           +             K I  +F        +++   L+   K FS   L  +     ++S+
Sbjct: 55  DVFALENIGQQKLTKGILSNFADLVEARTIKRQRYLW---KQFSFKHLPVE-----IISH 106

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           +Y+  ++        G     TP  +  L     L                + DP CG+G
Sbjct: 107 LYQRFVQ-------GGHGAVYTPPFLASLLLDQALP------YSKLTGTERILDPACGSG 153

Query: 218 GFLTDAMNHV-----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            FL  A   +               +  K       +G EL+P    + V  + +   ++
Sbjct: 154 IFLVGAFKRLVNVWRSRNSWRRPSVTSLKKILKQSIYGIELDPNAIDLSVFSLCLAICDA 213

Query: 267 DPRRDLSKNIQQG-----STLSKDLFT-------------GKRFHYCLSNPPFGKKWEKD 308
              + + ++++       +    D F                 F   + NPPF  K    
Sbjct: 214 LQPKVIWQDLKFDPLYKSNLFKADFFQVLLNSHQKVPTLFDNDFDVIIGNPPFESKLSDS 273

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
              V    +  +  R   G       + LF     N L+     GGR  ++  +  L+N 
Sbjct: 274 GKEVNYIAQQNDNSR---GSLPDKQVAYLFFEQAFNVLKP----GGRVCLIQPAQFLYNN 326

Query: 369 RAGSGESEIRRWLLENDLIEAIV 391
                    R  + +   I+ I+
Sbjct: 327 NTF----VFRAAIQKKYKIDTIL 345


>gi|67921034|ref|ZP_00514553.1| adenine specific DNA methyltransferase [Crocosphaera watsonii WH
           8501]
 gi|67857151|gb|EAM52391.1| adenine specific DNA methyltransferase [Crocosphaera watsonii WH
           8501]
          Length = 682

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 95/315 (30%), Gaps = 58/315 (18%)

Query: 113 AIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
            I    D+     +  L K  +   I +NF       +T  +  + + YE  +  + + +
Sbjct: 195 DIISKIDWAIDKLVEFLAKVDM-SSILENFGR-----ETRQEDPVVHFYETFLGAYEASL 248

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI---RTLYDPTCGTGGFLTDAMNHV 227
            +    + TP  VV      + D  D  F    G+     T+ DP  GTG FL + +  +
Sbjct: 249 RKSRGVYYTPEPVVSFIVQAVNDLLDKEFDLDDGLGSRKVTILDPATGTGTFLYEVIKQI 308

Query: 228 ADCGSHHKIPPIL----------VPHGQELEPETHAVC-----------------VAGML 260
                 + +                +G EL    + +                     + 
Sbjct: 309 RRNFEKYGVNRWNELLRDKKVLERLYGFELLMTPYTIAHLKLALLLENLGYRFQDKERLN 368

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH------YCLSNPPFGKKWEKDKDAVEK 314
           I    +         +  G  +S++                L NPP+    E   + +E 
Sbjct: 369 IYLTNALEEGVKKSEVLFGKYISEEANKAAAVKTEIPIYVVLGNPPYSGHSENKNNWIES 428

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNG 368
             +       G  L + +     +L     K       ++  N  G  A V +   L N 
Sbjct: 429 LVR-DYYKIDGVDLKEKNTK---WLQDDYVKFIRFGQWKIDKNSQGILAFVTNHGYLDNP 484

Query: 369 RAGSGESEIRRWLLE 383
                   +R+ LL+
Sbjct: 485 TFRG----MRQNLLQ 495


>gi|291557592|emb|CBL34709.1| DNA methylase [Eubacterium siraeum V10Sc8a]
          Length = 2082

 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 120/412 (29%), Gaps = 79/412 (19%)

Query: 67   IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTI 124
            I  +   K    S Y  S    S LG   +R         F  N +AI   +  +  +  
Sbjct: 992  IREQPSEKEKTLSDYTLSSDDYSDLGGEKSR---------FKHNLEAIKTLKAIESENRN 1042

Query: 125  ARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR-FGSEVSEGAEDFMTPR 181
            A  ++  +L K       S      +       + + E L    + +        F T  
Sbjct: 1043 ATPDEQKILAKYVGWGGLSAAFNADNKSWADEYNEVSELLTSEEYANARESTMTAFYTSP 1102

Query: 182  DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +++               K        + DP+ GTG F     + +              
Sbjct: 1103 EIIGAVY--------DGLKSIGFDGGNILDPSAGTGNFFGAMPSEMRKNSK--------- 1145

Query: 242  PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             +G EL+  +  +              +   S NI +G    K +     +   +SN PF
Sbjct: 1146 LYGVELDSISARIAK------------QLYQSANITEG-AYEKRVLNDNFYDAAISNVPF 1192

Query: 302  GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            G+ ++      +  + N                      +   K       GG  A + +
Sbjct: 1193 GQ-FKVHDKRYDSLNLNIHD-------------------YFFAKSLDKVRPGGVIAFITT 1232

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418
            S  L         S+ R+++ E   +   V LP   F     T + + +  L        
Sbjct: 1233 SGTLDKSN-----SKFRKYMAERAELLGAVRLPNTAFKAVAGTEVTSDIIFLQK------ 1281

Query: 419  RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG-KFSRMLD 469
            R K+Q +N+ +              +N         I    + G ++S   D
Sbjct: 1282 RDKIQSVNSENCEWLDLGTDDNGIPMNSYFVNHPDMIIGEMKQGIEYSMYGD 1333


>gi|313123381|ref|YP_004033640.1| adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279944|gb|ADQ60663.1| Adenine-specific DNA methylase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 332

 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 41/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                     +Y  L+ +  ++    A    TP     L   +L    D L    P   +
Sbjct: 67  KNWSKAQKEQVYGLLVLKAVNDDGWDANQMPTPP----LLATVLTLFMDKLL---PKRKQ 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            L DP  G+G  L      +A               G + + E   +      +  L++D
Sbjct: 120 VLLDPAVGSGNLLFSVDQQLAAQNHSEDRFD---LVGLDNDEEMLNLADVAAHLAGLKAD 176

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                         L+       +    +S+ P G            ++      R   G
Sbjct: 177 F--------YCQDALTG---WPVKPDVVVSDLPIGF-------YANDDNAKNFDLRTKEG 218

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               +   +LF+  +   L          A +L    +  G  G   ++   WL     +
Sbjct: 219 H---AYAHVLFVEQIVKNLAEDG-----FAFLLVPQNMLTGTVG---ADFMPWLASKVYL 267

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLW--TSIRNEGKKRRII 444
           +AIV LP+ LF        + I  N    +   +V L    +L    S+     K    
Sbjct: 268 QAIVQLPSSLFQSKISQKSILIFQNHGQSKPPKEVLLTKLENLKKEESLVALNIKLNEW 326


>gi|307067488|ref|YP_003876454.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
 gi|306409025|gb|ADM84452.1| Type I restriction-modification system methyltransferase subunit
           [Streptococcus pneumoniae AP200]
          Length = 237

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 69/245 (28%), Gaps = 59/245 (24%)

Query: 5   TGSAASLANFIWKN------AEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREK 58
           TG   +  + +W+       A  L  + +   +         ++ L+             
Sbjct: 3   TGELKNKIDQLWEILWTEGNANPL-TNIEQLTY------LLFMKDLDSV----------- 44

Query: 59  YLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTLGSTNTRNNLESY------IASFSDNA 111
                G   D E         F  +  EY  ST    N  +  E Y      I  F  N 
Sbjct: 45  ---ELGRESDAEFLGIPYEGVFPKDKPEYRWSTFK--NIGDAQEVYRLMTQEIFPFIKNL 99

Query: 112 KAIFEDFDFSS-------TIARLEKAGLLYKICKNFS----GIELHPDTVPDRVMSNIYE 160
           K   +D  FS         I +         I   F      ++   D      + +IYE
Sbjct: 100 KGDTDDTAFSRYMREAIFQINKPATLQKAISILDVFPTRGLDVDFDNDKQSITDIGDIYE 159

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L+ +  +        F TPR ++ +   L+      +            DP  G    +
Sbjct: 160 YLLSKLSTAGK--NGQFRTPRHIIDMMVELMQPTIKDIIS----------DPAMGFRVII 207

Query: 221 TDAMN 225
               N
Sbjct: 208 VIEAN 212


>gi|58039940|ref|YP_191904.1| putative type II DNA modification enzyme [Gluconobacter oxydans
           621H]
 gi|58002354|gb|AAW61248.1| Putative type II DNA modification enzyme [Gluconobacter oxydans
           621H]
          Length = 1610

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 41/170 (24%)

Query: 154 VMSNIYEHLIR------------RFGSEVS-------EGAEDFMTPRDVVHLATALLLDP 194
            + ++YE L+              F SE +       +    + TP  +V L     LDP
Sbjct: 407 ELGSVYESLLELQPQLGDDGKTLAFASETAEKRGNQRKATGSYYTPDSLVQLLLDTTLDP 466

Query: 195 DDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------- 237
                +          +  T+ DP CG+G FL  A   +A   + H+             
Sbjct: 467 VLDRAETQTANPAGALLNLTVIDPACGSGHFLLAAARRIATRVARHRADGLPSMADYRHA 526

Query: 238 ----PILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282
                    +G +  P    +    + I  LE   P       I+ G +L
Sbjct: 527 LREVASRCLYGVDRNPMAVELSKVALWIEALEPGRPLAFFDAQIRCGDSL 576


>gi|315123583|ref|YP_004065588.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315018838|gb|ADT66930.1| cpp14 [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 1935

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 201 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 260

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   + G  + +++P+
Sbjct: 261 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 316

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 317 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 352

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +                 L K S 
Sbjct: 353 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT--------------LNKTSV 398

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L      S  S IR ++ E       V L
Sbjct: 399 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRL 448

Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K     +     V+  +  D +      G    + ND
Sbjct: 449 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 506

Query: 447 DQRRQ 451
            +  +
Sbjct: 507 FRINE 511


>gi|93007190|ref|YP_581627.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
 gi|92394868|gb|ABE76143.1| N-6 DNA methylase [Psychrobacter cryohalolentis K5]
          Length = 600

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 77/207 (37%), Gaps = 32/207 (15%)

Query: 263 RLESDPRRDLSKN---IQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            + +D    +SKN   +   + L K  +       K F + +S  P G    K       
Sbjct: 187 GMIADALSLMSKNSFEVSYSNALDKPAYITSKNELKTFDHGVSFSPMGVMVPKHISDNID 246

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
            +      RF     K+   +          L L     G   + +    L++      E
Sbjct: 247 SYD-----RFIIPTKKVESAN---------ILHLIKQCRGTVVVSVPEGFLYSTM----E 288

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            ++R++L++  +++A+++LP+ ++  T + T L ++           V+ I+ T      
Sbjct: 289 KDLRQYLVDQGMLKAVISLPSGIWTGTAVKTSLLLIE---PNGNNQSVRFIDVTGEEFIE 345

Query: 435 RNEGKKRRIINDDQRRQILDIYVSREN 461
           +     +R+++      IL+   S + 
Sbjct: 346 KTT---KRLLSLSNIDIILEYLASDKE 369


>gi|228476638|ref|ZP_04061318.1| type I restriction enzyme EcoprrI M protein [Streptococcus
           salivarius SK126]
 gi|228251736|gb|EEK10810.1| type I restriction enzyme EcoprrI M protein [Streptococcus
           salivarius SK126]
          Length = 80

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 13/89 (14%)

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           +  +  D       NI  G+TL    F   + F   +SNPP+  KW    D         
Sbjct: 1   MHNINYDKF-----NIVLGNTLLNPHFGDDKPFDAIVSNPPYSVKWIGSDDPT-----LI 50

Query: 320 ELGRFGPG--LPKISDGSMLFLMHLANKL 346
              RF P   L   S     F++H  N L
Sbjct: 51  NDERFAPAGVLAPKSKADFAFVLHALNYL 79


>gi|145139|gb|AAA23389.1| restriction endonuclease [Escherichia coli]
          Length = 997

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 59/438 (13%), Positives = 114/438 (26%), Gaps = 87/438 (19%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
             I     LR  E         +   Y      +         +    YN+  +SL  + 
Sbjct: 232 NYINSIVFLRVCEDRDLEEYETL---YHFAQDKDFQSLVKKLKSSDKKYNSGLFSLEYID 288

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                  L S   S  ++ + I       +         L   I + F   ++  D + +
Sbjct: 289 E------LLSNANSCIEHHRTIILPHKAHTLSLFSLLIFL-GNIYEIFLSEKVRIDELGN 341

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +    EH+            +   TP  +V       +        +   +     D 
Sbjct: 342 VKIQPKEEHI----------DRDVVTTPTHIVKEIIRNTVVEYCKGKSDIEILNSKFADI 391

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRL 264
            CG+G F+  A   + D    + I              +  + E +   +C     I  +
Sbjct: 392 ACGSGAFIIVAFQFIQDILIDYYIQNDKSKLQQISEHTYKLKFEVKREILCK---CIYGI 448

Query: 265 ESDPRRDLS-----------------------------KNIQQGSTLSKDL--------- 286
           + D     +                              NI  G++L             
Sbjct: 449 DKDYNATKACTFGLLLKLLEGETTETIGKDTPILPALDTNILFGNSLIDSGDKVKQEDIF 508

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                  T  +F   + NPP+      +        +     R      K  D   LF+ 
Sbjct: 509 SINPFDLTNYQFDVIVGNPPY---MATEHMNQLTPKELDIYKRKYKSAYKQFDKYFLFIE 565

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFF 399
                L+      G    +L               ++R++L EN  +  +++  +  +F 
Sbjct: 566 RSIQILKEY----GYLGYILP----SRFIKVDAGKKLRKFLSENKYLSKLISFGSHQVFK 617

Query: 400 RTNIATYLWILSNRKTEE 417
                T L  L+    + 
Sbjct: 618 NKTTYTCLLFLNKENHDN 635


>gi|308229515|gb|ADO24169.1| M.AflII [Anabaena flos-aquae CCAP 1403/13F]
          Length = 521

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 86/288 (29%), Gaps = 55/288 (19%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F + + +     +LL    +              +P  G G  L  A+      
Sbjct: 9   DKYQTYFTSDQSLSSYMVSLLRLETNDKL----------LEPCAGEGHLLAAAL------ 52

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-- 288
                I   +     EL PE           + L+    +  +  I++  T+        
Sbjct: 53  ----GINKDISSVAYELHPEHA---------KSLKLKFSKFKNVEIRERDTIFCPDLDLC 99

Query: 289 ---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              G +F   L NPP+G   E ++    K    G   +    +         FL+     
Sbjct: 100 ESFGHKFTKILGNPPYGGWQEYERRTELKRKYPGFYIKETYTI---------FLLRCLKL 150

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L       GR   ++  + L+          IRR+LLE   IE++    + LF   +   
Sbjct: 151 LAEK----GRLVFIIPDTFLY----LHSHITIRRYLLEKFTIESVDVFRSSLFPGISFGY 202

Query: 406 ---YLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKRRIINDDQR 449
               +  +   K +      V+ I +   +T   N       I     
Sbjct: 203 AGLCIISIRAEKPKSNHSFSVRYIKSLGDFTESPNIKSHGNNIIQKNI 250


>gi|260654987|ref|ZP_05860475.1| putative type I restriction-modification system, M subunit
           [Jonquetella anthropi E3_33 E1]
 gi|260630302|gb|EEX48496.1| putative type I restriction-modification system, M subunit
           [Jonquetella anthropi E3_33 E1]
          Length = 514

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 85/294 (28%), Gaps = 64/294 (21%)

Query: 44  LECALEPTRSAVREKYLAFGGS--NIDLESFVKVAGYSFYNTSEYSLSTLGST-----NT 96
           L+  +   +  +  +  +       ++ E         F    +   + L        N 
Sbjct: 179 LDDLVA--KDKLVTERKSLKDLILEMEDEVLANAGVDVFEEVFKLIFTKLFDEMRSGRNK 236

Query: 97  RNNLE--SYIASFSDNAKAIFEDFDFSSTIARLE-----KAGLL---YKICKNFSGIELH 146
           + NLE  +Y  +  +  K I   F F     + +      A LL     +    S ++  
Sbjct: 237 KRNLEFRNYGETDEELKKKI--QFLFDQAKDQWDGVFTGDAKLLLSPSHLAICISSLQDV 294

Query: 147 PDTVPD-RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
                +  V+ + +E+L+ +           F TPR V+ +   +L          +P  
Sbjct: 295 KLFNSNLDVVDDAFEYLMSK---TSKGEKGQFFTPRYVIEMCVKML----------NPRA 341

Query: 206 IRTLYDPTCGTGGFLTDAMNHV------------------ADCGSHHKIPPILVPHGQEL 247
             T+ D   G+ GF    M HV                   +                + 
Sbjct: 342 DETMIDTAAGSCGFPVHTMFHVWRSIMKEKESVQSNLFTTEEKPDECTYYVNNNVFAIDF 401

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL----SKDLFTGKRFHYCLS 297
           + +T  V     LI         D   N+   +TL      D      + Y + 
Sbjct: 402 DEKTVRVARTLNLIAG-------DGQTNVLHLNTLDYEHWDDTAKDNDWRYNVG 448


>gi|323466883|gb|ADX70570.1| Possible site-specific DNA-methyltransferase (Adenine-specific)
           [Lactobacillus helveticus H10]
          Length = 350

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 88/299 (29%), Gaps = 40/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +  +  + ++  L  +  ++         TP  +  +   L+        K       
Sbjct: 84  DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 136

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DPT GTG  L   ++ +                G + + E   +    +     + D
Sbjct: 137 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 191

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                                     +  SNP               E+      R   G
Sbjct: 192 IELYCQ---------------DALMPWMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 236

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S   +L +  +   L+      G A +V+  S L    +G   ++   WL +   +
Sbjct: 237 H---SFAHLLLIEQIIKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 285

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           +AIV LP D+F        +    N   + +  +V L  +++     ++     K    
Sbjct: 286 KAIVELPDDMFKNKFNQKSILFFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 344


>gi|331005595|ref|ZP_08328966.1| hypothetical protein IMCC1989_2177 [gamma proteobacterium IMCC1989]
 gi|330420610|gb|EGG94905.1| hypothetical protein IMCC1989_2177 [gamma proteobacterium IMCC1989]
          Length = 270

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L ++C+  S + +  +  P  ++  +Y  L        S+    + TP  +  L   +L 
Sbjct: 63  LQRLCEMLSIVVMLLEPEPTDILGQLYMEL-----ELSSKENGQYFTPPYISGLMAEILH 117

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                   + P    TL++P CG GG +   +  V     +
Sbjct: 118 GESLDQKLQQP--FVTLHEPACGAGGMVMSFVKVVIQKKHN 156


>gi|166365645|ref|YP_001657918.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166088018|dbj|BAG02726.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 1154

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 69/236 (29%), Gaps = 19/236 (8%)

Query: 114 IFEDFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
           +FE     S +  L    +L             E        + +   YE  ++ F  ++
Sbjct: 286 LFEQIAAPSKLKSLGLVEVLNWTGAALNRVRREEFFRQFDEGQAVQYFYEPFLQAFDPDL 345

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHV 227
            +    + TP ++V    A +            G       + DP CGTG +L + + ++
Sbjct: 346 RKELGVWYTPPEIVRYMVARVDRVLREELNIEDGLANPDVYILDPCCGTGAYLVEVLRYI 405

Query: 228 ADCGSHH----------KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSK- 274
            D    +          K   I    G E+      V     G+ ++ L      D  + 
Sbjct: 406 TDTLQENGAGALAMALVKKAAIERIFGFEILTAPFVVAHLQLGLFLQSLGVPLIEDSERV 465

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            I   + L+      +     +            +     E K G+      G P 
Sbjct: 466 GIYLTNALTGWQPPDEESKQKIQQLQLSFPELNKEREAADEVKRGKPILVILGNPP 521


>gi|16082323|ref|NP_394792.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10640679|emb|CAC12457.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Thermoplasma acidophilum]
          Length = 496

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 57/185 (30%), Gaps = 27/185 (14%)

Query: 129 KAGLLYKICKNFS-----GIELHPDTVPDRVMSNIYEHLIRRF----GSEVSEGAEDFMT 179
               L ++ +  +             +   V+ NI +   +R          +    + T
Sbjct: 294 DNEALQEVIEGLNHSKDDSYRYDFSVIESDVLGNILKSTPKRAKLEESKTHRKEQGIYYT 353

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +V       +                + DP CG+G FL  A   + +    +     
Sbjct: 354 PSYIVDYIVKNTVGEYIKTHTPEEIKKVRILDPACGSGSFLIRAYKELENYWKQNSDFAQ 413

Query: 240 LVP-----------------HGQELEPETHAVCVAGMLIRRLESDP-RRDLSKNIQQGST 281
           L                   +G +L+P+   +    +L++ LE       L  NI+ G++
Sbjct: 414 LTLDSEEFYSKKVEILRNNIYGVDLDPKAVEIAQLNLLLQILEKKQRLPLLQNNIKVGNS 473

Query: 282 LSKDL 286
           L  D 
Sbjct: 474 LIDDP 478


>gi|260102551|ref|ZP_05752788.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083645|gb|EEW67765.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 340

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 40/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +  +  + ++  L  +  ++         TP  +  +   L+        K       
Sbjct: 74  DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 126

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DPT GTG  L   ++ +                G + + E   +    +     + D
Sbjct: 127 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 181

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   +     L           +  SNP               E+      R   G
Sbjct: 182 IE------LYCQDALIP---------WMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 226

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S   +L +  +   L+      G A +V+  S L    +G   ++   WL +   +
Sbjct: 227 H---SFAHLLLIEQIIKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 275

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           +AIV LP D+F        + +  N   + +  +V L  +++     ++     K    
Sbjct: 276 KAIVELPDDMFKNKFNQKSILVFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 334


>gi|126179107|ref|YP_001047072.1| hypothetical protein Memar_1159 [Methanoculleus marisnigri JR1]
 gi|125861901|gb|ABN57090.1| protein of unknown function DUF450 [Methanoculleus marisnigri JR1]
          Length = 1036

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 15/118 (12%)

Query: 129 KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRRF-------------GSEVSEG 173
              +L +I  +  +          P  ++  +YE  + +                EV + 
Sbjct: 306 DDKVLKQIISHLYYPDSPYEFSVFPADILGQVYEQFLGKVIRLTAGHQAKVEEKPEVKKA 365

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
              F TP  +V       +                + DP CG+G FL  A  ++ D  
Sbjct: 366 GGVFYTPTYIVEYIVKQTVGNLVEGKDPKAVAGLHVLDPACGSGSFLLGAYQYLLDWH 423


>gi|328461769|gb|EGF34005.1| putative modification methylase [Lactobacillus helveticus MTCC
           5463]
          Length = 333

 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 91/299 (30%), Gaps = 40/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +  +  + ++  L  +  ++         TP  +  +   L+        K       
Sbjct: 67  DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DPT GTG  L   ++ +                G + + E   +    +     + D
Sbjct: 120 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 174

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   +     L           +  SNP               E+      R   G
Sbjct: 175 IE------LYCQDALIP---------WMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 219

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S   +L +  +   L+      G A +V+  S L    +G   ++   WL +   +
Sbjct: 220 H---SFAHLLLIEQIIKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 268

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           +AIV LP D+F        + +  N   + +  +V L  +++     ++     K    
Sbjct: 269 KAIVELPDDMFKNKFNQKSILVFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 327


>gi|161507252|ref|YP_001577206.1| putative modification methylase [Lactobacillus helveticus DPC 4571]
 gi|160348241|gb|ABX26915.1| putative modification methylase [Lactobacillus helveticus DPC 4571]
          Length = 333

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 89/299 (29%), Gaps = 40/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +  +  + ++  L  +  ++         TP  +  +   L+        K       
Sbjct: 67  DEISQKDKAQVFTFLTLKAINDDGFDVNKMPTPPAISTVIAMLM-------HKLVKNEKI 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DPT GTG  L   ++ +                G + + E   +    +     + D
Sbjct: 120 EIVDPTIGTGILLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNLA--DVAAHLNDFD 174

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                                     +  SNP               E+      R   G
Sbjct: 175 IELYCQ---------------DALMPWMCSNPDVVISDLPIGYYPVDENAKNFENRAEKG 219

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S   +L +  +   L+      G A +V+  S L    +G   ++   WL +   +
Sbjct: 220 H---SFAHLLLIEQIVKNLKPA----GYAFLVVPKSIL----SGKIGADFMPWLTKKVYL 268

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL--INATDLWTSIRNEGKKRRII 444
           +AIV LP D+F        + +  N   + +  +V L  +++     ++     K    
Sbjct: 269 KAIVELPDDMFKNKFNQKSILVFQNHGEDAKASEVLLTKLDSLKKEEALIRFNVKLNEW 327


>gi|270265410|ref|ZP_06193670.1| hypothetical protein SOD_n00300 [Serratia odorifera 4Rx13]
 gi|270040665|gb|EFA13769.1| hypothetical protein SOD_n00300 [Serratia odorifera 4Rx13]
          Length = 279

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 80/234 (34%), Gaps = 29/234 (12%)

Query: 51  TRSAV-REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
            +  V +++  +       +++F   A Y            L +    N           
Sbjct: 49  KKEQVNKQENRSTNPRKEFMDTFRVTARYHHRYEVFSDFVKLSACALENAFMKS------ 102

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
                 E  ++ +TI R EKA    ++ +  + + +  +      + ++Y  L       
Sbjct: 103 ---EAIEA-EYMATINRYEKADA-ERMAQLLAWLVMGLEQGMCDFLGSLYMEL-----EL 152

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            S     F TP  +  L   L++    A  + S  +  TL +PTCG GG +      + +
Sbjct: 153 GSANIGQFFTPFTMSELMAQLVIGDRLAELETSSYI--TLSEPTCGGGGMVIAFAKQMLE 210

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            G + +          +++P    +C   + +  +           +  G++LS
Sbjct: 211 RGYNPQTQLR--ADCVDIDPVAARMCYIQLSLLGI--------PARVAIGNSLS 254


>gi|322378562|ref|ZP_08053005.1| type II restriction modification enzyme methyltransferase
           [Helicobacter suis HS1]
 gi|322380000|ref|ZP_08054267.1| type IIS restriction enzyme [Helicobacter suis HS5]
 gi|321147573|gb|EFX42206.1| type IIS restriction enzyme [Helicobacter suis HS5]
 gi|321149011|gb|EFX43468.1| type II restriction modification enzyme methyltransferase
           [Helicobacter suis HS1]
          Length = 677

 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 64/454 (14%), Positives = 140/454 (30%), Gaps = 85/454 (18%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLES---------FVKVAGYSFYNTSEYSLSTLG 92
           + +E     T + + +         ++L+           +  A    Y TS   L  L 
Sbjct: 186 KAIEDLESQTETQLNKLNQFLHDEILNLDPNDRVALLVGMIMAASGVAYKTSPLKLEDLK 245

Query: 93  STNTRN---------NLESYIASFS----------DNAKAIFEDFDFSSTIARLEKAGL- 132
           +   ++          +++++ + +             + +F             +  + 
Sbjct: 246 NEQDKDSHDGHEFLKKIKAFLNAKNLPPEKISIVVHELQKVFIHSKLW-QTNTYTRKNIA 304

Query: 133 ---LYKICKNFSG--IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
              L  I   F      L        +   ++  L +      +E  +  +TPR VV L 
Sbjct: 305 ISPLKTIYGRFLEGVFPLVKKLSQADIAGKLFNVLTKWLEVPDNEKNDVVLTPRIVVDLM 364

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILV 241
             L     D+           ++D   G+G FL  +MN +             +   I  
Sbjct: 365 VNLAEVNQDSF----------VWDYATGSGAFLVSSMNKMIQDCTEKILNQEEREKKIAH 414

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
               +L        +   L+  L      D S N+    +L  D   G ++         
Sbjct: 415 IRAYQLLGIEKRTDIY--LLGVLNMLLLGDGSANLLHKDSLV-DFKEGVKYE-------- 463

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVL 360
                      + + K      F    P  + G   +F+     ++       GRA +++
Sbjct: 464 ---------QGDYKGKLFNANVFLLNPPYSAKGKGFVFVDRALERMTS-----GRAVVII 509

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERR 419
             +               + +L+ + + A + +P DLF   +++ T +++    K   + 
Sbjct: 510 QENAGSGNGLPYT-----KDILKKNTLLASIKMPLDLFVGKSSVQTAIYVFEVGKPHNKE 564

Query: 420 GKVQLINATD--LWTSIRNEGKKRRIINDDQRRQ 451
             V+ IN ++     + R + K    + D  R +
Sbjct: 565 HMVKFINFSNDGYMRAARKKAKASVNLRDVDRAK 598


>gi|169834613|ref|YP_001693403.1| hypothetical protein CLD_A0164 [Clostridium botulinum B1 str. Okra]
 gi|169123161|gb|ACA46996.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra]
          Length = 972

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 95/311 (30%), Gaps = 46/311 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           IL    +R L                  G      E+ +K+A       S +S       
Sbjct: 182 ILRLIFIRFLIDRGID-----IGYDGFNGDIKESQEALLKLANNKRKLYSFFSYLKNKFN 236

Query: 95  NTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                LE   Y  + +D    + + F   +    +E   L +    +F+ I +       
Sbjct: 237 GNLFELEDEVYDEALNDEVFELLKCFLSGNQ--EMESGQLSFLPLYDFNIIPIEL----- 289

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +SNIYE L+     +  +    F TP  +           +      +      + DP
Sbjct: 290 --ISNIYEVLLGEKAQDDDK---AFYTPEYLADYIVK-----ESLGTFLTKDSQCKVLDP 339

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCVAGMLIR 262
           +CG+G FL +++  +                         +G +  PE   V +  + + 
Sbjct: 340 SCGSGIFLVESLQLIISKNVDDNGYIKDNDKLCQLIESNIYGVDSNPEAIDVTIFSLYLT 399

Query: 263 RLES----DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKD 310
             +             N++  +    D F  +        +F + L NPP+G   E    
Sbjct: 400 LFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNPPWGSVKEGLHS 459

Query: 311 AVEKEHKNGEL 321
               E+K  + 
Sbjct: 460 QYCDENKIPQY 470


>gi|38505536|ref|NP_942157.1| hypothetical protein ssl5001 [Synechocystis sp. PCC 6803]
 gi|38423560|dbj|BAD01771.1| unknown protein [Synechocystis sp. PCC 6803]
          Length = 59

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 580 EWIPDTNLTEYENVPYLESIQDYFVREVSPHVPDA 614
           E+  D NL + EN+     I  YF+REV PHV +A
Sbjct: 25  EYKTDANLRDTENIFLNNEICRYFLREVKPHVNNA 59


>gi|317010034|gb|ADU80614.1| hypothetical protein HPIN_07115 [Helicobacter pylori India7]
          Length = 797

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 105/328 (32%), Gaps = 36/328 (10%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       +   + A+    +  E F      +   T    L+ L     
Sbjct: 173 RYLKEALIQNQEKTQVSSIFNNFKAYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIEL----HPDTVP 151
           + NL++  +    N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSFIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMVSILKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-------- 203
                + YE  +  +  ++ E    + TP  VV      L       FK++P        
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALD 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHA 253
                L D   GTG FL +A     +                   +   +G E     +A
Sbjct: 351 NENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYA 410

Query: 254 VCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
           +    +     +  +   + D +  I   +TL +     +   Y    P F  + +  ++
Sbjct: 411 IAHLNLSQAFKQEFKKPLKEDDALKIILTNTLIQP---SEIAAYRGLQPIFETELKSAQE 467

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLF 338
             + E+     G         ++G   +
Sbjct: 468 IKKDENILIITGNPPYSGASSNEGLFEW 495


>gi|222778489|ref|YP_002576126.1| DNA methylase/helicase [Campylobacter lari RM2100]
 gi|222539774|gb|ACM64874.1| DNA methylase/helicase [Campylobacter lari RM2100]
          Length = 1934

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 142/472 (30%), Gaps = 84/472 (17%)

Query: 65  SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI 124
            N          GY  Y     S  +    +  ++ E Y+ S  D  +   +    S TI
Sbjct: 162 ENNQRSVLELTTGYDGY--EGRSFKSGQKLDFASDDEVYLGSLKDRFQKNLQAIKLSKTI 219

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLI-----RRFGSEVSEGAE 175
            +  +       +I   FSG    P      ++     ++ LI       +    +   +
Sbjct: 220 EQENRYATKQEQEILNKFSGWGGIPQAFDFQNKEWEKEFKELINTLDYAEYEKAKTSTLD 279

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP     +    +    + L   +    + +++P+ G G FL+ A N+         
Sbjct: 280 AFYTP----KIIIDTIYQGLNQLGFNNDNHTKEIFEPSAGIGSFLSYAKNY--------- 326

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKR 291
                     EL+  +  +                    N+    T+    F      K 
Sbjct: 327 -SDKYRFTCIELDTMSSNILK------------------NLYPNQTIYNKAFQHHLFDKP 367

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   + NPPFG+K   D +               P L K S  +  F+ +    L+    
Sbjct: 368 YDAFIGNPPFGQKKIIDPNN--------------PTLNKTSVHNY-FIGNAIKNLKED-- 410

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLW 408
             G AA V+SS  L      S  S IR ++ E       V LP + F     T + T + 
Sbjct: 411 --GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRLPNNAFKKRANTEVTTDII 463

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
                K            + + +          R    ++R    D++      ++ +  
Sbjct: 464 FFKKGKDLNINNSWL--ESVEYYD--------NRFAEAEKRGMHTDVFNDFRINEYFKKN 513

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                G   IK  +  +    LD     +   +   + L      +    +K
Sbjct: 514 PQNILGKMDIKSSQYGKDLVCLDDGRNLKEALENFVKSLPKDIYKYQETKIK 565


>gi|210616747|ref|ZP_03291211.1| hypothetical protein CLONEX_03432 [Clostridium nexile DSM 1787]
 gi|210149669|gb|EEA80678.1| hypothetical protein CLONEX_03432 [Clostridium nexile DSM 1787]
          Length = 269

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 25/160 (15%)

Query: 138 KNFSGI-----ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           + FS +               ++  IY  L              F TP  +  L   + +
Sbjct: 70  EKFSKMFAMVVSGMERNPEKDLLGEIYMQL-----RISDNQKGQFFTPYPISKLMAEITI 124

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
           +  + +          L +P CG+G  +  A N + + G             Q+++    
Sbjct: 125 EEKEDI-----SAPFLLNEPACGSGVNVIAAANTMKERG--IDYQRNAYFIAQDIDSLVA 177

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
            +C   M +              +  G TL  ++   +++
Sbjct: 178 KMCYIQMSLMGCPGV--------VIIGDTLVGNIEDMEKW 209


>gi|158421587|ref|YP_001527814.1| DEAD-like helicase [Deinococcus geothermalis DSM 11300]
 gi|158342830|gb|ABW35116.1| DEAD-like helicase [Deinococcus geothermalis DSM 11300]
          Length = 1328

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 81/260 (31%), Gaps = 62/260 (23%)

Query: 161 HLIRRFGSEVSEGAE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            L+ R+      GA   ++ TP ++      ++            G      +P+ G G 
Sbjct: 304 QLLARYSGNGGIGASLNEYYTPPELGEAMWQVM-----RKLGSGTGAG---LEPSSGPGV 355

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               A                       L P +  +  A   +     D      +   Q
Sbjct: 356 LAQFAGEDARMDLVE-------------LSPISAGIANA---LFGHRHDVHSMSFEAFHQ 399

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG--ELGRFGPGLPKISDGSM 336
                      +R+ +   NPPFG    +D++A   +      E  R+            
Sbjct: 400 -------RHPEQRYDFLTGNPPFG---PRDENAYLDDGYQDVQECSRY------------ 437

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            F +   + L+     GG A +VL +           ++E R  +L    + AI  LPTD
Sbjct: 438 -FTLRALDHLKE----GGVATLVLPAGL----ARNQNDAEWRARVLARAEVVAIHGLPTD 488

Query: 397 LFFRTNIATY---LWILSNR 413
            F R    T    +W+L  R
Sbjct: 489 TFSRAGTDTATTDVWVLRAR 508


>gi|315059225|gb|ADT73553.1| cpp14 [Campylobacter jejuni subsp. jejuni S3]
          Length = 1932

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   + G  + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +                 L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT--------------LNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L      S  S IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K     +     V+  +  D +      G    + ND
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507

Query: 447 DQRRQ 451
            +  +
Sbjct: 508 FRINE 512


>gi|57505091|ref|ZP_00371038.1| helicase, Snf2 family [Campylobacter coli RM2228]
 gi|57019134|gb|EAL55847.1| helicase, Snf2 family [Campylobacter coli RM2228]
          Length = 1854

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 124 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 183

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   + G  + +++P+
Sbjct: 184 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDGHTKEIFEPS 239

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 240 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 275

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +                 L K S 
Sbjct: 276 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDTT--------------LNKTSV 321

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L      S  S IR ++ E       V L
Sbjct: 322 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNYIAEQATFLGAVRL 371

Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K     +     V+  +  D +      G    + ND
Sbjct: 372 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 429

Query: 447 DQRRQ 451
            +  +
Sbjct: 430 FRINE 434


>gi|308273431|emb|CBX30033.1| hypothetical protein N47_D28420 [uncultured Desulfobacterium sp.]
          Length = 1032

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 84/288 (29%), Gaps = 54/288 (18%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
           +          +P   +S +Y+  +         G   F TP  +V+         D+  
Sbjct: 277 HLDFKAYDFQHIPIETLSMVYQQFLH--TEGKGRGQGAFYTPIHLVNFIL------DELD 328

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQEL 247
            K       T+ DP CG+G FL      + +  +                      G E+
Sbjct: 329 TKRPLQKGMTVLDPACGSGAFLVQCFRRLIEREAIKSPNKKLSPFTLRELLTDHIWGVEV 388

Query: 248 EPETHAVCVAGMLIRRLESDPRRD--------------LSKNIQQGSTLSKDLFTG---- 289
           + +   V    +++  L+     D                KNI   +    D  +     
Sbjct: 389 DEDACGVTELSLILTLLDYVDPPDLEKPEYKKFQLPPLRDKNIFYCNQGFFDPESKWQSA 448

Query: 290 ---KRFHYCLSNPPFGKKWEKDKDAVEK---EHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              K + + + NPP+ K   +  D  +K   E       RF      +S   +      A
Sbjct: 449 KHRKGYDWIVGNPPWKKLNSEKMDNGDKYAIEWIRKNTQRF-----PVSSNQIA--EAFA 501

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
            +     +  G   ++L +  LF         + R        +  +V
Sbjct: 502 WEASQYLSAYGLFGMLLPAGTLFKTNG----KKFREKFFSTLRVWCVV 545


>gi|225407951|ref|ZP_03761140.1| hypothetical protein CLOSTASPAR_05172 [Clostridium asparagiforme DSM
            15981]
 gi|225042522|gb|EEG52768.1| hypothetical protein CLOSTASPAR_05172 [Clostridium asparagiforme DSM
            15981]
          Length = 2122

 Score = 54.6 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 69/260 (26%), Gaps = 55/260 (21%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S  +       T   V      ++                 + +P+CG G F    
Sbjct: 846  EEYASARASTLNAHYTSPTVARAIYEVVG--------NLGFHSGNILEPSCGVGNFFGLL 897

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +A              +G EL+  +  +              +     +I       
Sbjct: 898  PEGMAASK----------LYGVELDSISGRIA------------GQLYPKASIAV-RGFE 934

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K  F    F   + N PFG     D    +      +                 FL    
Sbjct: 935  KTNFPDGFFDVAIGNVPFGGYKVVDSRYDKHNFFIHDY----------------FLAKAI 978

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            +K+      GG  A + S+     G     +   R +L E   +   + LP + F     
Sbjct: 979  DKVRP----GGVLAFITSNGV-SGGTMDKKDRRAREYLAERCDLLGAIRLPNNAFAANAG 1033

Query: 401  TNIATYLWILSNRKTEERRG 420
            T++ T +  L       + G
Sbjct: 1034 TDMTTDILFLQKLDAPRQLG 1053


>gi|227877256|ref|ZP_03995329.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256842819|ref|ZP_05548307.1| adenine-specific DNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256848883|ref|ZP_05554317.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|262045785|ref|ZP_06018749.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|293380462|ref|ZP_06626529.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|295692607|ref|YP_003601217.1| adenine-specific DNA methylase [Lactobacillus crispatus ST1]
 gi|227863112|gb|EEJ70558.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus crispatus JV-V01]
 gi|256614239|gb|EEU19440.1| adenine-specific DNA methylase [Lactobacillus crispatus 125-2-CHN]
 gi|256714422|gb|EEU29409.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-1A-US]
 gi|260573744|gb|EEX30300.1| adenine-specific DNA methylase [Lactobacillus crispatus MV-3A-US]
 gi|290922969|gb|EFD99904.1| N-6 DNA Methylase [Lactobacillus crispatus 214-1]
 gi|295030713|emb|CBL50192.1| Adenine-specific DNA methylase [Lactobacillus crispatus ST1]
          Length = 333

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 115/365 (31%), Gaps = 47/365 (12%)

Query: 87  SLSTLGSTNTR--NNLESYIA-SFSDNAKAIFEDFDFSSTI--ARLEKAGLLYKICKNFS 141
           +   L +        L++ +  SF++     F++ +               + ++ + + 
Sbjct: 3   NFEKLFNQFLDCVQTLQTALNVSFTEALVETFDNLESGKIKVENGAPDEKTVAELSQKYQ 62

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I+   D +  +  + ++  L  +  ++         TP  +  +   L+          
Sbjct: 63  AIDY--DEISQKEKAQVFTFLTLKAVNDDGFDVNQMPTPPAIATVVAMLMHKLLKDQ--- 117

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                  + DP  GTG  L   ++ +                G + + +   + +  +  
Sbjct: 118 ----KMEIVDPAVGTGNLLFSIISQLKALNHS---KDNYQLVGIDNDEDM--LSLTDVAA 168

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                D        +     L    +        +S+ P G  +  D++A   E++  + 
Sbjct: 169 HLNNIDIE------LYHQDALMP--WMCPNADAIVSDLPVGY-YPVDENAKNFENQAKKG 219

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F           +L +  + N L+      G A +V+  S L    +G   ++   WL
Sbjct: 220 HSF---------AHLLLIEQIINNLKP----NGYAFLVVPKSIL----SGKIGADFMPWL 262

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGK 439
            +   ++AIV LP D+F        + +  N   E +  +V L     L           
Sbjct: 263 TKKVYLKAIVELPDDMFKNKFNQKSVLVFQNHGDEAKASEVLLTKLGSLKKEEALIQFNV 322

Query: 440 KRRII 444
           K    
Sbjct: 323 KLNEW 327


>gi|311109965|ref|YP_003982816.1| hypothetical protein AXYL_06819 [Achromobacter xylosoxidans A8]
 gi|310764654|gb|ADP20101.1| hypothetical protein AXYL_06819 [Achromobacter xylosoxidans A8]
          Length = 283

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 16/153 (10%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD- 196
           +  S + +  +      + ++Y  L        + G   F TP +V  L   +L    D 
Sbjct: 77  QCLSHVVMALEERYQDFLGSLYMGL-----DLGNAGTGQFFTPYEVSLLMAKMLHGQRDL 131

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
           A      G   TL DP  G G  L  A     D G        L   G +++     +  
Sbjct: 132 AELVRERGGFITLNDPCIGGGAMLIAAAEQFRDQG--LPSHRTLHVTGVDIDRTAVQMSY 189

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
             + +  + +           QG++LS + + G
Sbjct: 190 IQLSLLNVPAILL--------QGNSLSPEPYKG 214


>gi|207111303|ref|ZP_03245465.1| Type I restriction enzyme modification subunit [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 56

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT-GKRFHYCLSNPPFGKKW 305
              T+ +C   M +  +          +I  G TL        + F   +SNPP+  KW
Sbjct: 1   NLTTYNLCRINMFLHDIN-----YSKFHIALGDTLLDPKHEDDEPFDAIVSNPPYSTKW 54


>gi|315930741|gb|EFV09751.1| type I restriction modification DNA specificity domain protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 782

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 93/323 (28%), Gaps = 29/323 (8%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
            +GQ      +A  +A   +    +         I               F   ++NPP+
Sbjct: 1   MYGQNEINILYADALASFELANTNNLEGEKAKPQI-----------ESNSFDLLIANPPY 49

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
               +   + +  + KN           + ++    F      +     N   +AAI+L 
Sbjct: 50  SV--KGFLETLSDKSKNTYKLFNDDINIETNNSIECF---FCERANQILNDNAKAAIILP 104

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           SS L      S     R  L +N    AIV L    F  T   T +  L  ++T ++   
Sbjct: 105 SSIL---NKDSIYKNTREILFQNFDFIAIVELGNQTFGATGTNTIILFLRKKETFKQENH 161

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD-YRTFGYRRIKV 480
           +   + + +   I  E  K               +   +   +S  L+         ++ 
Sbjct: 162 LISQDYSLIKERIEAENLKDNESFYQNYLSAYCDFRKFDKELYSNFLNGNLDSKLTELEA 221

Query: 481 LRPLRMSFILDKT--GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            +  R +F        L   +     +    L    +L   + + +    Y         
Sbjct: 222 FKDYRNAFRQTSDYKKLKESKIYKESKDKQDLEDKAFLAYAQAIEKDKLLY-------FS 274

Query: 539 SIKSNEAKTLKVKASKSFIVAFI 561
              + E   +K  +       F+
Sbjct: 275 LSLNQEVLIIKSPSDIKEQKKFL 297


>gi|291530902|emb|CBK96487.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2598

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 111/371 (29%), Gaps = 78/371 (21%)

Query: 67   IDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTI 124
            I  +   K    S Y  S    S LG   +R         F  N +AI   +  +  +  
Sbjct: 991  IREQPSEKEKTLSDYTLSSDDYSDLGGEKSR---------FRHNIEAIKTLKAIESENRN 1041

Query: 125  ARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLIRR-FGSEVSEGAEDFMTPR 181
            A  ++  +L K       S      +       + + E L    + +        F T  
Sbjct: 1042 ATPDEQKVLAKYVGWGGLSAAFNADNKSWADEYNEVSELLTSEEYANARESTMTAFYTSP 1101

Query: 182  DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            +++               K        + DP+ GTG F       + +            
Sbjct: 1102 EIIGAVY--------DGLKSIGFDGGNILDPSAGTGNFFGAMPVEMREKSK--------- 1144

Query: 242  PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
             +G EL+  +  +              +   S NI +G    K +     +   +SN PF
Sbjct: 1145 LYGVELDSVSARIAK------------QLYQSANITEG-AYEKRVLNDNFYDAAISNVPF 1191

Query: 302  GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            G+ ++      +  + N                      +   K       GG  A + +
Sbjct: 1192 GQ-FKVHDKRYDSLNLNIHD-------------------YFFAKSLDKVRPGGVIAFITT 1231

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEER 418
            S  L         S+ R+++ E   +   V LP   F     T + + +  L        
Sbjct: 1232 SGTLDKSN-----SKFRKYMAERAELLGAVRLPNTAFKVVAGTEVTSDIIFLQK------ 1280

Query: 419  RGKVQLINATD 429
            R K+Q +N+ +
Sbjct: 1281 RDKIQSVNSEN 1291


>gi|323485199|ref|ZP_08090550.1| type I restriction-modification system methyltransferase subunit
           [Clostridium symbiosum WAL-14163]
 gi|323401518|gb|EGA93865.1| type I restriction-modification system methyltransferase subunit
           [Clostridium symbiosum WAL-14163]
          Length = 300

 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 19/175 (10%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                   +  ++  L     +  +     F TP  V  L   ++        ++   + 
Sbjct: 133 DQNQEQDFLGKMFMRL-----NLGNRSTGQFFTPYHVCELMAEVVATYALEKIEKYGYI- 186

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELEPETHAVCVAGMLIR 262
            ++ DP CG G  L   ++ +     H   P           Q+++     +C   + + 
Sbjct: 187 -SINDPCCGAGATLIAGVHVIRKQLEHCDTPRNYQNHILVVAQDVDEIVGLMCYIQISLL 245

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            L           I+ G++++  + T          P +       +  + + +K
Sbjct: 246 GLAGF--------IKIGNSITDPMSTDDSSENYWYTPMYFSDVWSTRRMINQMNK 292


>gi|296126920|ref|YP_003634172.1| hypothetical protein Bmur_1892 [Brachyspira murdochii DSM 12563]
 gi|296018736|gb|ADG71973.1| protein of unknown function DUF450 [Brachyspira murdochii DSM
           12563]
          Length = 1058

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 111/414 (26%), Gaps = 118/414 (28%)

Query: 105 ASFSDNAKAIFEDFD-------FSSTIARLE-----KAGLLYKICKN--FSGIELHPDTV 150
            +F  N   IF+  D       F      +         ++ +I     +         +
Sbjct: 311 ENFYSNLLGIFKRADGKYNSGLFDFAKDTISGNIEIDNKVIKEIINELYYPLSPYEFSVI 370

Query: 151 PDRVMSNIYEHLIRR-------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
              +M N YE  + +                EV +    + TP  +V       +     
Sbjct: 371 SVEIMGNAYEQFLGKTITIGRNHSAKIELKPEVRKAGGVYYTPEYIVDYIVENTVGEAIR 430

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH------------------------ 233
             K        + DP CG+G FL  A  ++ +                            
Sbjct: 431 GKKPEEIANIKILDPACGSGSFLLGAYKYLLNYHIEYYNKIKDRAKFKGSKEDVIKENGD 490

Query: 234 -----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLS 273
                 K        G +++     V    +L++ LE +                   L 
Sbjct: 491 LTIWIKKQILRNNIFGVDIDSNAVEVTKLSLLMKCLEGESPASIQNNQDLFNERALPSLE 550

Query: 274 KNIQQGSTLSKDLFTGK-------------------------------RFHYCLSNPPFG 302
            NI+ G++L    F  +                                F   + NPP+ 
Sbjct: 551 DNIKSGNSLINSNFNSEGERLFASDEDTQYKIKCFSWDKEFSSVIKKGGFDIIIGNPPYV 610

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI--VL 360
           K++        +  +N + G          D    F+    + L+     G  A    + 
Sbjct: 611 KEYTD-----RESFENVKKGNLSKYYQGKMDLWYFFVCFGLDILKENGKLGFIAPNNWIT 665

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
           ++           +S+I +++   D           +F    I T ++IL+  K
Sbjct: 666 NAGASILRNKVLTDSKILKYVDFGDF---------RVFLEAGIQTMVFILNKEK 710


>gi|254426590|ref|ZP_05040305.1| hypothetical protein S7335_1273 [Synechococcus sp. PCC 7335]
 gi|196187602|gb|EDX82569.1| hypothetical protein S7335_1273 [Synechococcus sp. PCC 7335]
          Length = 296

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 15/135 (11%)

Query: 159 YEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           Y+  +     +    ++    F TP  +    T +         K     I T+ +P  G
Sbjct: 90  YQDFLGEIAEDELLLNKRGGQFFTPYIICQAMTKMSFGDMKEQLKGK--GILTVCEPAVG 147

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            G  +  +   VA  G   +          ++  +   +    +    L++         
Sbjct: 148 GGAMVIASAEEVASQGIDPRSCLQ--FDCTDVSRDAFNMAYIQLSALGLQAV-------- 197

Query: 276 IQQGSTLSKDLFTGK 290
           ++ G++LS + +  +
Sbjct: 198 VRHGNSLSMEYWEHR 212


>gi|166364661|ref|YP_001656934.1| hypothetical protein MAE_19200 [Microcystis aeruginosa NIES-843]
 gi|166087034|dbj|BAG01742.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 1099

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 69/441 (15%), Positives = 133/441 (30%), Gaps = 115/441 (26%)

Query: 39  TLLRRLEC--ALEPTRSAVREKYLA-----FGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
             +R LE    L         +  A         +  L    +   +     S+ S +  
Sbjct: 201 IFIRYLEDRGILTQEYFEAIAQNNATWKALLNAPDDQLNMETEAKQHYIKILSDKSFTYA 260

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP---- 147
                  +       F  + +              +E+  L   + + F   ++ P    
Sbjct: 261 LFNRLSQDFNG--DMFPSDEQEA----------ESVEQRHL--SLLQEFLQGDIDPQKKL 306

Query: 148 -------DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
                  D +P  ++S+IYE       +E +       TP  +V    + +L        
Sbjct: 307 FFWAYKFDIIPISLISSIYEEFYHESNTE-NIDNGTHYTPSSLVEFVLSKVLT--SDCLT 363

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------LVPHGQELEP 249
             P     + DP CG+G FL +A   +     +                     G E+  
Sbjct: 364 THP----RILDPCCGSGIFLVEAFRRIVRHRVYQNQRQRLSWQELREILKNQIAGIEINS 419

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQG----------STLSKDLF------------ 287
           E   +    + +  L      D+   I++G          + LS+D              
Sbjct: 420 EAIRITAFSLYLALLNYQEPPDILLQIKRGEKLPFLIYQANGLSEDNHFNNLVCDNAFQE 479

Query: 288 -------------TGKRFHYCLSNPPFGKKWEKD-----------KDAVEKEHKNGELGR 323
                        + +     + NPP+G    KD           +   E+++  G+  R
Sbjct: 480 FSNSEDVILSRNFSSQCADVVVGNPPWGSPKTKDKKGTKDLNIALQWCQERDYPVGDKER 539

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                      S  F+  + + L+      G +A+V+S+   F     S E   R+  L 
Sbjct: 540 -----------SQAFIWRVFDFLKD----NGWSALVVSTGIFFKTHDKSKE--FRQKWLN 582

Query: 384 NDLIEAIVALP--TDLFFRTN 402
           + L++ +V      D+FF++ 
Sbjct: 583 SVLLKEVVNFAHVRDIFFKSG 603


>gi|290959568|ref|YP_003490750.1| hypothetical protein SCAB_51701 [Streptomyces scabiei 87.22]
 gi|260649094|emb|CBG72208.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1198

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 20/159 (12%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKE 201
            +    +   R ++++Y HL      +  + +    TP  VV L   L L+P  +A    
Sbjct: 161 HDFEDASRDTRFLADLYGHL----SDQDRKSSGQVSTPDFVVELIHDLTLEPALEAHGST 216

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETH 252
           +      + DP CG+GGFL DA   +    S  +                HG +++P   
Sbjct: 217 AGPAGFRMIDPACGSGGFLLDAYARLCRRWSDARPDMSPWQRAARALASVHGCDIDPCAV 276

Query: 253 AVCVAGMLIRRLE------SDPRRDLSKNIQQGSTLSKD 285
           ++    +L+  ++       D   D+   +  G  L  D
Sbjct: 277 SISRFRLLMAAMDVARARRLDDVPDIPLLVATGDALLHD 315


>gi|223934434|ref|ZP_03626355.1| putative type II DNA modification enzyme [bacterium Ellin514]
 gi|223896897|gb|EEF63337.1| putative type II DNA modification enzyme [bacterium Ellin514]
          Length = 1551

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 67/224 (29%), Gaps = 55/224 (24%)

Query: 154 VMSNIYEHLI-------------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
              ++YE L+                   ++      + +  + TP  +V       LDP
Sbjct: 416 EFGSVYERLLELHPVIHPATNTLPSHFAFKQAAGNERKTSGSYYTPSSLVECLLDSALDP 475

Query: 195 -DDALFKESPGMIRT----------LYDPTCGTGGFLTDAMNHVA--------------- 228
             +   K    +             + DP CG+G FL  A   +A               
Sbjct: 476 VLEDRLKNFARLGFKSADQAVIALKVCDPACGSGHFLIAAAQRIARRLALLRSNGDEPSV 535

Query: 229 -DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDL 286
            +     +       +G ++ P +  +C  G+ +  +E   P   L  +++ G++L    
Sbjct: 536 SELRHTLREVISHCIYGVDINPMSVELCKVGLWLEAMEAGKPLSFLDHHVRCGNSLL--- 592

Query: 287 FTGKRFHYCLSNPP---FGKKWEKDKDAVEKEHKNGELGRFGPG 327
             G          P   F      DK A     K     R G G
Sbjct: 593 --GATPALIAEGVPDDAFTAIEGDDKKACAVLKKLNARERRGFG 634


>gi|28867279|ref|NP_789898.1| helicase domain-containing protein [Pseudomonas syringae pv. tomato
            str. DC3000]
 gi|28850513|gb|AAO53593.1| helicase domain protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 1636

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 90/332 (27%), Gaps = 49/332 (14%)

Query: 158  IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGT 216
            +Y+   R    +++E      TP +VV      +       F ++ G     + DP  GT
Sbjct: 867  LYDKFFRNAFPKMTERLGIVYTPVEVVDFILHSVNHLLQQEFGQTLGSKGVHIIDPFTGT 926

Query: 217  GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSK 274
            G F+T  +                  H  EL    + +    +       E        +
Sbjct: 927  GTFITRLIQSGLIKPEELPHKYKHEIHANELVLLAYYIAAINIEAAYHG-EVIDGYTPFE 985

Query: 275  NIQQGSTL------------------SKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEK 314
             I    T                    +           + NPP+  G+K E D +A   
Sbjct: 986  GICLTDTFQMYEKDDLVDALLVDNSARRKRQKNLDIRVIVGNPPYSEGQKSENDNNANLG 1045

Query: 315  EHKNGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
              K     R           S G     +             G    V ++  L    A 
Sbjct: 1046 YPKLDSQIRSTYARQSAATLSKGLYNSYIRAIRWASDRLGESGIVGFVTNAGFLEARFAD 1105

Query: 372  SGESEIRRWLLENDLIEAIVAL----------------PTDLF-FRTNIATYLWILSNRK 414
                 +R+ L E      I  L                   +F   +  A  ++ L    
Sbjct: 1106 G----MRKCLAEEFSNIYIFHLRGLRGKHTSGERAKQEGGQIFGMGSGTAICIFFLVKNT 1161

Query: 415  TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
              ERRG +   ++ + +     +  K + + D
Sbjct: 1162 DSERRGNIYF-HSIEEYLDRDQKLAKLKELQD 1192


>gi|325956439|ref|YP_004291851.1| adenine-specific DNA methylase [Lactobacillus acidophilus 30SC]
 gi|325333004|gb|ADZ06912.1| Adenine-specific DNA methylase [Lactobacillus acidophilus 30SC]
 gi|327183256|gb|AEA31703.1| adenine-specific DNA methylase [Lactobacillus amylovorus GRL 1118]
          Length = 333

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 106/350 (30%), Gaps = 57/350 (16%)

Query: 98  NNLESYIASFSDNAKAIFEDFD------FSSTIARLEKAGL-----------LYKICKNF 140
            N E     F D  + +    +         T   LE+  +           + ++ K +
Sbjct: 2   ENFEKLFNQFLDCVQTLQNALNVSFTEALVETFDNLEQGKIKVENGAPDEKTVEELSKKY 61

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             I+   D +  +  + ++  L  +  ++    A    TP  +  +   L+         
Sbjct: 62  QAIDY--DHISQKDKAQVFTFLTLKAVNDDGLDANQMPTPPAISTVVAMLMHKLLKDE-- 117

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                   + DP  GTG  L   ++ +                G + + E   +    + 
Sbjct: 118 -----EMEIVDPAVGTGNMLFSIISQLKALNHS---KDNYQLVGIDNDEEMLNL--TDVA 167

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
               + D        +     L    +        +S+ P G     +     + H    
Sbjct: 168 AHLNDIDIE------LYCQDALMP--WMCPNADAIVSDLPIGYYPIDENAKNFENHAKKG 219

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
                      S   +L +  +   L+      G A +V+  S L    +G   ++   W
Sbjct: 220 H----------SFAHLLLIEQIIKNLKSD----GYAFLVVPKSIL----SGKIGADFMPW 261

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           L +   ++AIV LP D+F        + +  N  +E +  +V L     L
Sbjct: 262 LTKKVYLKAIVELPDDMFRNKFNQKSILVFQNHGSEAKPSEVLLTKLDSL 311


>gi|167626553|ref|YP_001677053.1| hypothetical protein Fphi_0335 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596554|gb|ABZ86552.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 960

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 77/560 (13%), Positives = 167/560 (29%), Gaps = 120/560 (21%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             N++  I    DN   +F   D    +++  ++        +F                
Sbjct: 258 GTNIDDRIKHTVDNLADVFRAVDLRKILSKFGRSTKTQDPIVHF---------------- 301

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------- 208
             YE  +  + S++ +    + TP+ VV      + +   + F  S G+  T        
Sbjct: 302 --YEDFLSEYDSKLRKAKGVWYTPQPVVSFIVRAVDEVLKSEFGLSQGLADTTKTKIQID 359

Query: 209 -----------------------LYDPTCGTGGFLTDAMNHVADCGSHH---------KI 236
                                  + DP  GTG FL +A+  + +              + 
Sbjct: 360 SQTTDKRAKSGYKQIEKEVHKVQVLDPATGTGTFLAEAIKFIYNNNFKAMQGAWSGYVEE 419

Query: 237 PPILVPHGQELEPETHAVC--VAGMLI--RRLESDPRRDLSKNIQQGSTL---------- 282
             I   +G EL   ++A+      ML+     +    +    +I   ++L          
Sbjct: 420 HLIPRLNGFELLMASYAMAHLKLDMLLTDTGYKPKSTQSQRFHIYLTNSLEEHHPDTGTL 479

Query: 283 -----------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                      +  +         + NPP+        + +    ++ +         + 
Sbjct: 480 FANWLSNEANEANQIKKDTPVMVVMGNPPYSGISSNTGEWITSLIEDYKYVDGVHFNERK 539

Query: 332 ---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLI 387
              +D  + F+ +    +E   NG G  A +     L N         +R  LL+  D I
Sbjct: 540 HWLNDDYVKFMRYGQYYIEK--NGSGILAFINPHGFLDNPTFRG----MRYSLLKTYDKI 593

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRG----KVQ-LINATDLWTSIRNEGKKRR 442
              + L  +              S +K     G     V  ++    +   ++   KK  
Sbjct: 594 YT-IDLHGN--------------SKKKETCPDGSKDENVFDIMQGVSINILVKTGAKKNN 638

Query: 443 IINDDQRRQILDIYVSRENG-KFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            + +       D+Y  R +  +F       + G+++++  +P       D +  A  E  
Sbjct: 639 ELAEVYH---YDLYGKRNDKYEFLSQNSLSSIGFKKVEYSKPYYFFIPKDDSQRASYEKG 695

Query: 502 ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES---FVKESIKSNEAKTLKVKASKSFIV 558
            +   L P + +  +     ++  I      +    F       ++ ++   +  K+   
Sbjct: 696 FSVVSLFPENVTGIVTARDKVVIDISKQKLLDRINNFCNNKYSDDDIRSWLFRNKKNGKY 755

Query: 559 AFINAFGRKDPRADPVTDVN 578
              ++ G K   A      N
Sbjct: 756 LAGDSRGWKLTEAREKIKNN 775


>gi|302668857|ref|YP_003832682.1| hypothetical protein bpr_II162 [Butyrivibrio proteoclasticus B316]
 gi|302397197|gb|ADL36100.1| hypothetical protein bpr_II162 [Butyrivibrio proteoclasticus B316]
          Length = 244

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 10/172 (5%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +      + ++Y  L     S          TP  V  +   +  D  +   K+   + 
Sbjct: 80  NEDPNQDFLGDMYMKL-----SMGERAWGQIFTPYHVCEMMAQMTFDSPEKDIKDHGYV- 133

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            T  DP  G G  L  +   + D G   K    ++  GQ+++     +    + I    +
Sbjct: 134 -TTLDPAVGGGAMLIASAQALRDAGYDPKTQ--MIAVGQDVDITAVYMAFVQLAIIGCPA 190

Query: 267 -DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                D       G+ L  D  +   +   L    + ++ +   + +   +K
Sbjct: 191 VVVHGDSLAEPYTGNPLFVDDNSSYWYTPMLFTKAWFERRKAFIEELRDNNK 242


>gi|294155654|ref|YP_003560038.1| hypothetical protein MCRO_0406 [Mycoplasma crocodyli MP145]
 gi|291600460|gb|ADE19956.1| hypothetical protein MCRO_0406 [Mycoplasma crocodyli MP145]
          Length = 494

 Score = 54.2 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/449 (10%), Positives = 124/449 (27%), Gaps = 71/449 (15%)

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPD 152
           +  +N  + +    +  +++    +    ++         L +  + F     +     D
Sbjct: 67  DLASNEINNLGLEKETKESVLASLNLIRGVSTGLNNDREKLQRFIEYFISDVYYSIKSDD 126

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y  + ++     +      +TP     L   L                  + D 
Sbjct: 127 LFLETLYMEIDKK---AEATDKGIVLTPIFAAELMVDLAEIDYKKDI---------VADL 174

Query: 213 TCGTG-GFLTDAMNHVADCGSHHKIPPILV-------------PHGQELEPETHAVCVAG 258
             GTG   L      +++     +   I                   + +P+   +C+A 
Sbjct: 175 CSGTGLFSLLSYSKMLSNMNKDFENKKIGHGEYKTYEERLYNSIIANDSDPKMITLCLAN 234

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            L++ L  +   +      Q ST      +     + +  + NPP+    +         
Sbjct: 235 FLLKSLNHNLIYNQDVLKLQKSTFKIEINNEKITIQPNKAILNPPYEDTHKP-------- 286

Query: 316 HKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                               +  L      +    + G +  +++        +      
Sbjct: 287 --------------------LDILYKNIELVTKRGSIGNKIVVIIP------SQKFGNNK 320

Query: 376 EIRRWLLENDLIEAIVALPTDLFFRTNI--ATYLWILSNRKTEERRGKVQ---LINATDL 430
           ++   +L    +E ++ +  DLF  +       +++ +  K       ++     +   +
Sbjct: 321 KVFSKILNISTLETVIKMQEDLFTDSGKSQPASIFVFNADKPHSNEDVIRYYNFTDTGFV 380

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFIL 490
           +        K  I  D +   ++ I      GK S         +  +            
Sbjct: 381 YLKDSGLVDKNGIYKDKKNELLMKISGKWNRGK-SNNFIRTWNNFYEVNKDLEFGTKINP 439

Query: 491 DKTGLARLEADITWRKLSPLHQSFWLDIL 519
               + + EADITW  ++        + L
Sbjct: 440 KLVDVKKEEADITWENITIKKMLSEKEDL 468


>gi|301155806|emb|CBW15274.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
          Length = 253

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 71/191 (37%), Gaps = 23/191 (12%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           ++   L ++   F+ I    +      + +++  L         +    + TP  + H  
Sbjct: 62  DEKQALSRL---FNIIVEALEHKTYDFLGSVFMSL-----DLGDQYKAQYFTPGHIAHFM 113

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            A+ L    +L K       TL +PTCG+G  + +A N++ +          +    ++L
Sbjct: 114 AAVTLSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDL 169

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWE 306
           +     +C   M +  +  +        +  G+TL  +  +      + L N  + KK E
Sbjct: 170 DFTAALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHILGN--WNKKLE 219

Query: 307 KDKDAVEKEHK 317
                 E E++
Sbjct: 220 SADSYTEAEYQ 230


>gi|225620244|ref|YP_002721501.1| restriction enzyme methylase subunit [Brachyspira hyodysenteriae
           WA1]
 gi|225215063|gb|ACN83797.1| restriction enzyme methylase subunit [Brachyspira hyodysenteriae
           WA1]
          Length = 1011

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 66/469 (14%), Positives = 125/469 (26%), Gaps = 131/469 (27%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             LR  E         +++     G S       +       YN+  +  S        +
Sbjct: 240 IFLRAAEDRGIEEYGDLKKTCENKGESFYGNLLKIFEKADGRYNSGLFDFSK-------D 292

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           ++ S I   +   K I                  LY     +         +   ++ N 
Sbjct: 293 SISSSIEIDNKVIKEII---------------NELY-----YPLSPYEFSVISVEIIGNA 332

Query: 159 YEHLIRR-------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           YE  + +                EV +    + TP  +V    A  +       K     
Sbjct: 333 YEQFLGKTITIGKNHSAKIELKPEVRKAGGVYYTPEYIVDYIVANTVGEAIKGKKPEEIA 392

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSH-----------------------------HKI 236
              + DP CG+G FL  A  ++ +                                  K 
Sbjct: 393 NIKILDPACGSGSFLLGAYKYLLNYHIEYYNKIKDRAKFKGSKEDVIKENGDLTIWIKKQ 452

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESD---------------PRRDLSKNIQQGST 281
                  G +++     V    +L++ LE +                   L  NI+ G++
Sbjct: 453 ILRNNIFGVDIDSNAVEVTKLSLLMKCLEGESPASIQNNQDLFNERALPSLEGNIKLGNS 512

Query: 282 LSKDLFTGK-------------------------------RFHYCLSNPPFGKKWEKDKD 310
           L    F  +                                F   + NPP+ K++     
Sbjct: 513 LINSNFNSEGERLFASDEDTQNKIKYFSWDKEFPSVIKKGGFDIIIGNPPYVKEYTD--- 569

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI--VLSSSPLFNG 368
              +  +N + G          D    F+    + L+     G  A    + ++      
Sbjct: 570 --RESFENVKKGNLSKYYQGKMDLWYFFVCFGLDILKENGKLGFIAPNNWITNAGASILR 627

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
                +S+I +++   D           +F    I T ++IL+  K +E
Sbjct: 628 NKVLTDSKILKYIDFGDF---------RVFLEAGIQTMVFILNKEKIDE 667


>gi|240851279|ref|YP_002972682.1| helicase/methyltransferase [Bartonella grahamii as4aup]
 gi|240268402|gb|ACS51990.1| helicase/methyltransferase [Bartonella grahamii as4aup]
          Length = 1652

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 64/245 (26%), Gaps = 27/245 (11%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             + ++ +       LEK    Y   K  +     P      ++  +Y+   R       E
Sbjct: 815  DVLDEANLDKESKDLEK---FYASVKLRASGITDPKAKQRLIV-ELYDKFFRYAFPRTVE 870

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKESPGM-IRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP +VV      + D  +  F ++ G     + DP  GTG F+T  +       
Sbjct: 871  KLGIVYTPVEVVDFILHSVNDVLEQEFGQTLGSSGVHIMDPFTGTGTFITRLLQSGLIKP 930

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL------- 282
               K       H  E+    + +      M    L         + I    T        
Sbjct: 931  EEMKHKFCHEIHANEIVLLAYYIAAINIEMTYHGL-MGGDYVPFEGICLTDTFQLYEQEK 989

Query: 283  ------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                         +           + NPP+    + + D  +         R       
Sbjct: 990  DLISDLLVDNSTRRSRQKELDIRVIVGNPPYSSGQKSENDNAQNIGYPKLDRRIRETYAA 1049

Query: 331  ISDGS 335
             S  S
Sbjct: 1050 QSKAS 1054


>gi|40643146|emb|CAE14681.1| unnamed protein product [Leptospira phage LE1]
          Length = 1971

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 71/539 (13%), Positives = 145/539 (26%), Gaps = 100/539 (18%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAG---------YSFYNTSEYSLSTLGSTNTRNNLES 102
           + A+ ++ L         +++   A          Y F   S    + +         +S
Sbjct: 414 KDALLKEGLDQKAEEWVDQAYKSDAKSLNDLLNKAYRFVQISSDDSNKIRKGLKSIPHQS 473

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            + + S N + + E F          K        +  +       T   + +   YE  
Sbjct: 474 NLETASKNVEIVKEKFSQKKQFEINSKCK------QILASTPPSQITEEQKEILRQYEGS 527

Query: 163 IRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
             +               F TPR ++             +         +  +P+ G G 
Sbjct: 528 GGQSTNDDAESNRGMLYQFFTPRKMI--------SKVQDIMARYLKPGDSGLEPSAGIGR 579

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           F           G   K    ++ +  +       +      I   +++      + +  
Sbjct: 580 F---------AEGEGSKYNWDMLEYNPDDN-TAFQIAR----ILHPDANVSDKAFETLFV 625

Query: 279 GSTLSK--DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            S      + + GK++ +   NPP+G +      A+E +  N     F            
Sbjct: 626 DSKNRSVGENYKGKKYKFISGNPPYG-EMSGKFKAIEGKGWNRYEHYF------------ 672

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPT 395
                  N+       GG    V+ S+ L      +GE+  ++ +  + +L+EA   +P 
Sbjct: 673 ------INRGLDTLEEGGTMFYVVPSTFL-----QAGETTWKKKIFAKAELLEA-YRMPE 720

Query: 396 DLFFRTNIATYLWILSNR------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
             F  T I   + +L               GK    N   ++       +  R    +  
Sbjct: 721 GSFGNTAIGVDVIVLRKNTTGTQDNANAFNGKYFEENPEHVFGD--TLERTNRFGRPETY 778

Query: 450 RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSP 509
            +       + +  +S  L                      D   L  +  D    K   
Sbjct: 779 VK------GKADAFYSMTLPSPK-----------EMSQAQKDAISLGLMGNDNAKGKRKA 821

Query: 510 LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568
                   + K   ++             + K +  K +     + F   F   F  KD
Sbjct: 822 EIAEGTKKVNKTATKKEEIKNTI------AEKKDPTKKIDTYTQEEFNTKFNKKFTEKD 874


>gi|187778265|ref|ZP_02994738.1| hypothetical protein CLOSPO_01857 [Clostridium sporogenes ATCC
           15579]
 gi|187771890|gb|EDU35692.1| hypothetical protein CLOSPO_01857 [Clostridium sporogenes ATCC
           15579]
          Length = 576

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 96/310 (30%), Gaps = 40/310 (12%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS--EVSEGAEDF 177
           F   I ++    +L     +    E   +      +   YE++  ++    +  +     
Sbjct: 4   FKDNIEKIF--NILISPINSIYKYEAINNFKRKLSIGK-YENISLKYYEIIKGKKETGVI 60

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA--------D 229
            TP+++ +      +   D            + DP+CG G  L     ++         +
Sbjct: 61  YTPQEISNYMIENTISKKD----IINNPFIKILDPSCGCGNILIPCFFYLKNIFNENLQE 116

Query: 230 CGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               + I        Q +           ++ +  ++I  L        + N ++   L 
Sbjct: 117 INKKNNINLKEQYINQHILDNNLYGFDIDSIAIKILII-DLFYLTGYYNNNNFKKKDFLI 175

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +D+     F   + NPP+         +V+KE+      ++G       D S  F ++  
Sbjct: 176 EDI--NNNFDVYIGNPPY-----VGHKSVDKEYSMLLKEKYGEIYKDKGDISYCFFINAL 228

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFRTN 402
           N      N   +   + S   +           +R++L EN  +  I+       F    
Sbjct: 229 N----YSNINSKITFITSRYFM----ESKSGYNLRKYLKENCNVYKILDFYGIRPFKGAG 280

Query: 403 IATYLWILSN 412
           I   +  +  
Sbjct: 281 IDPAIIFIDR 290


>gi|21223693|ref|NP_629472.1| DNA methylase [Streptomyces coelicolor A3(2)]
 gi|5139576|emb|CAB45593.1| putative DNA methylase [Streptomyces coelicolor A3(2)]
          Length = 1200

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 68/454 (14%), Positives = 139/454 (30%), Gaps = 95/454 (20%)

Query: 35  ILPFTLLRRLEC---ALEP--------TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           +L    +R  E      EP         R     +Y A+  S+ D   +      +F   
Sbjct: 69  VLGTVFVRFCEDNRLIPEPYLTGPDGDRRELAEARYDAYVESDDDPT-YRGWLEKAFDEL 127

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG- 142
            +     L      N L   I    D A+ + E         + ++AG+L     +F+  
Sbjct: 128 GQGQAGRLLFDKRHNPLYQ-IPLSHDGARELVE------FWRQRDEAGVL---VHDFTDP 177

Query: 143 -IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             E   +    R + ++Y+ L         +      TP  V        ++P    F  
Sbjct: 178 LNEDGTEGWDTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRTMNPAVREFGY 233

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETH 252
                  + DPTCG+G F+  A   +    +  +    +           HG ++ P   
Sbjct: 234 EE---LKMIDPTCGSGHFVLGAFRRLVRLWAEGQPGRDVHERVRAALHSIHGVDINPFAV 290

Query: 253 AVCVAGMLIRRLESDPRRDLSK--------NIQQGSTL---------------------- 282
           A+    +L+  + +   R L++        ++  G +L                      
Sbjct: 291 AIARFRLLVAAIAASGVRTLAEAAKYEWPIHLAVGDSLIKARQLELTLGGDEDGGYDPLA 350

Query: 283 -----SKDLFTG------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                ++D+          R+H  + NPP+    +K  + + +E  +   G +   +P  
Sbjct: 351 SFTYATEDVHEHPGILQQGRYHVVVGNPPYITVKDKKLNELYRELYDACGGTYALSVP-- 408

Query: 332 SDGSMLFLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                 F        +   + G   G    + ++S +       G   I R+  +   + 
Sbjct: 409 ------FAQRFFELAKRGGDEGRAYGMVGQITANSFMKR---EFGTKLIERYFRDRVELT 459

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
            ++             T + +    K  +R   +
Sbjct: 460 EVIDTSGAYIPGHGTPTVILVGKRCKGSQRLSTI 493


>gi|169835034|ref|YP_001715745.1| hypothetical protein CLK_A0118 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169409141|gb|ACA57551.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 972

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 94/311 (30%), Gaps = 46/311 (14%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           IL    +R L                  G      E+ +K+A       S +S       
Sbjct: 182 ILRLIFIRFLIDRGID-----IGYDGFNGDIKESQEALLKLANNKRKLYSFFSYLKNKFN 236

Query: 95  NTRNNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                LE   Y  + +D    + + F        +E   L +    +F+ I +       
Sbjct: 237 GNLFELEDEVYDEALNDEVFELLKCFLSGKQ--EMESGQLSFLPLYDFNIIPIEL----- 289

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +SNIYE L+     +  +    F TP  +           +      +      + DP
Sbjct: 290 --ISNIYEVLLGEKAQDDDK---AFYTPEYLADYIVK-----ESLGTFLTKNSQCKVLDP 339

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHAVCVAGMLIR 262
           +CG+G FL +++  +                         +G +  PE   V +  + + 
Sbjct: 340 SCGSGIFLVESLQLIISKNVDANGYIKDNDKLCQLIESNIYGVDSNPEAIDVTIFSLYLT 399

Query: 263 RLES----DPRRDLSKNIQQGSTLSKDLFTGK--------RFHYCLSNPPFGKKWEKDKD 310
             +             N++  +    D F  +        +F + L NPP+G   E    
Sbjct: 400 LFDYKDPKSLDDFRLPNLKNKNLWVSDFFDDEKLIALKKIKFQFILGNPPWGSVKEGLHS 459

Query: 311 AVEKEHKNGEL 321
               E+K  + 
Sbjct: 460 QYCDENKIPQY 470


>gi|170717936|ref|YP_001784986.1| type III restriction protein res subunit [Haemophilus somnus 2336]
 gi|168826065|gb|ACA31436.1| type III restriction protein res subunit [Haemophilus somnus 2336]
          Length = 1365

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/418 (12%), Positives = 109/418 (26%), Gaps = 68/418 (16%)

Query: 136  ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
            I +  S I+         ++ ++Y++   +   ++ +      TP  VV      + D  
Sbjct: 706  IQQRISNIKSPEGRQS--IIKDLYDNFFAQAFKKLKDKLGIVYTPIQVVDFIIRSVEDVL 763

Query: 196  DALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
               F  S       + DP  GTG F+T  +                  H  E+    + +
Sbjct: 764  QNEFNASLADKGVQILDPFTGTGTFITRLLQSGI-IPPEKLPQKYNEIHANEIVLLAYYI 822

Query: 255  CVAG-------MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG------------------ 289
                       +L +  E+         I    T                          
Sbjct: 823  AAINIESVYHSLLAKNNENPTAYQPFNGICLTDTFQMYEKEDLIDQILVENSERRKRQKE 882

Query: 290  KRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHL--AN 344
                  + NPP+  G+    D +         E  R    L   + + + L+  ++    
Sbjct: 883  LDIQVIIGNPPYSVGQTSANDNNENTSYPLLEEKIRNTYALHSTATNKNALYDSYIKAIR 942

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN------DLIEAIVA------ 392
                     G    + ++  L    A      +R+ L +         +   +       
Sbjct: 943  WASDRIQDKGVIGFITNAGFLETNAANG----LRKCLHDEFSDLYIFHLRGAIRGKSGIS 998

Query: 393  ---LPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK--------- 439
                  ++F   T +A  + + +  K +   G +   +  D  +      K         
Sbjct: 999  AKKEGQNVFDIMTGVAISILVKNPDKEKN--GNIHFYDIGDFLSKKEKLEKIAEFGSING 1056

Query: 440  --KRRIINDDQRRQILDIYVSRENGKFSRML-DYRTFGYRRIKVLRPLRMSFILDKTG 494
              K     +    Q  D    R+    S M+   +    +   +          ++  
Sbjct: 1057 ITKTEQWQEIIPDQFNDWLNQRDPNFDSYMVLGSKDKNNKEPTIFENYSAGLQTNRDA 1114


>gi|153955772|ref|YP_001396537.1| DNA modification methyltransferase [Clostridium kluyveri DSM 555]
 gi|146348630|gb|EDK35166.1| Predicted DNA modification methyltransferase [Clostridium kluyveri
           DSM 555]
          Length = 587

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 105/336 (31%), Gaps = 54/336 (16%)

Query: 160 EHLIRRFGS--EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           E+  +++     +++ A    T R++ +     L++  D            + DP CG G
Sbjct: 41  EYFSQKYYELVSINKRAGIVYTQRELSYFMIKNLIEEKD----VIYNPFVKIVDPACGCG 96

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHG--QELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
             L+    ++      +      V +   +     +H VC     +   + D       N
Sbjct: 97  NILSVCFFYLRHIFIKNIEVINNVNNINLKLENINSHIVCN---NLFGFDIDEIALKILN 153

Query: 276 I---------QQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           I         Q+ + + KD       K+F   + NPP+    +  +    +  K      
Sbjct: 154 IDLFSISGEFQKENFVLKDFLIDAIEKKFDIFIGNPPY-IGHKSIEKKYSETLKRVYKNI 212

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           +       SD    F       LE      G+AA +          A SG  ++R +L  
Sbjct: 213 YKD----KSDVYYCFFEKSLKSLEKA----GKAAFITPRYFC---EACSG-KQLREFLST 260

Query: 384 NDLIEAIVALPTDLFF------RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
           N  I  IV      F+         +   +    N+K    + ++   + ++     +  
Sbjct: 261 NTTIYKIVD-----FYGIRPFKGVGVDPIIIFFRNKKGLNNKIEIIKPDKSE-----KKG 310

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             K        + +I   Y      + S   +   F
Sbjct: 311 RNKFYDSLFLNKDKI--RYKKFFIPQSSIDDNGWVF 344


>gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter aurescens TC1]
 gi|119951547|gb|ABM10457.1| putative Helicase [Arthrobacter aurescens TC1]
          Length = 1605

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 81/292 (27%), Gaps = 52/292 (17%)

Query: 137  CKNF-SGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             + F + + +  + + +       ++ +YE   +      +E      TP +VV      
Sbjct: 805  LEKFYASVRMRAEGIDNAEGKQKIITELYEKFFKLAFPRAAESLGIVYTPVEVVDFIIRS 864

Query: 191  LLDPDDALFKESPGMIRT-----LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
            +    D + +   G   T     + DP  GTG F+   +                  H  
Sbjct: 865  V----DDVLRSEFGASLTDRGVHVLDPFTGTGTFIVRLLQSGLIRPEDLLYKYTNDLHAN 920

Query: 246  ELEPETHAVCVAGM--LIRRL----ESDPRRDLSKNIQQGSTLS----KDLFTGKRF--- 292
            E+    + +    +   +  L    + +        I    T       D      F   
Sbjct: 921  EILLLAYYIAAINIEATLHGLLTEQDPEAGYVPFDGIVLTDTFQMTEDDDTLDNVIFPQN 980

Query: 293  ------------HYCLSNPPFGKKWEKDKDA--------VEKEHKNGELGRFGPGLPKIS 332
                           + NPP+        DA        ++   +     R    L +  
Sbjct: 981  NERAAHQKALDIRVIVGNPPYSVGQGSQNDANANLKYPTLDASIERTYAARSRAALKRNL 1040

Query: 333  DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              S +  +  A+        GG  A V +   + +  A      +R+ L + 
Sbjct: 1041 YDSYIRAIRWASNRLETSKHGGIVAYVSNGGYIDSNTADG----LRKTLADE 1088


>gi|307822928|ref|ZP_07653158.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
 gi|307735703|gb|EFO06550.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
          Length = 985

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 79/259 (30%), Gaps = 63/259 (24%)

Query: 208 TLYDPTCGTGGFLTDAMN----HVADCGSH--------------HKIPPILVPHGQELEP 249
            + DP+CG+G FL  A +    +  +                   +       +G ++  
Sbjct: 375 KVIDPSCGSGAFLVAAFDVFAPYYRELAQALRRLYPDTLEAFNGDRAILTHNLYGVDINA 434

Query: 250 ETHAVCVAGMLIRRLESDPRRDL-SKNIQQGSTLS--------------------KDLFT 288
               +    + ++  +   + D    ++  G++L                     K++  
Sbjct: 435 GAIEIAKLSLWLKTAKPGHKLDSLDGHLLCGNSLRFQPDSKSRWSSEHFGWNTTFKNILA 494

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML---FLMHLANK 345
              F   L NPP+          V  E                SD + L   F       
Sbjct: 495 KGGFDVVLGNPPY----------VRMEVLKPFKPYLSANYAVASDRADLYAYFYEIGLRL 544

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIA 404
           L+     GG    + SS+    G   SGE  +RR+LL+N  ++ +V      +F      
Sbjct: 545 LKP----GGCLGYISSSTFFKTG---SGE-PLRRYLLDNARLQTVVDFGDLQVFEGVTTY 596

Query: 405 TYLWILSNRKTEERRGKVQ 423
             +  L   K E     V 
Sbjct: 597 PAIVCLEKGKAES--DHVL 613


>gi|291037371|ref|ZP_06568335.1| DNA helicase restriction enzyme Type III R subunit [Gluconacetobacter
            xylinus NBRC 3288]
          Length = 1737

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 49/378 (12%), Positives = 102/378 (26%), Gaps = 51/378 (13%)

Query: 105  ASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               S   + + +  D         RLE       + +  SGI+         V+  +Y+ 
Sbjct: 812  NPMSRAMQTVLDALDRHSLHKETDRLEAFYT--SVRERASGIDTSYGRQK--VIKELYDG 867

Query: 162  LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFL 220
              ++    + +      TP +VV      + D  +  F ++ G     + DP  GTG F+
Sbjct: 868  FFQKAFPRLKDRLGIVYTPIEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTFI 927

Query: 221  TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQG 279
            T  +                  H  E+    + +    +     +  D   +  + I   
Sbjct: 928  TRLLQSGLITKEQMLHKYRQELHANEIVLLAYYIASINIEASFSDLMDGTYEPFEGICLT 987

Query: 280  STLS------------KD------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             T              +D                + NPP+    E   D  +        
Sbjct: 988  DTFRLNEPHDLVSSTLEDNNRRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVTYPTLD 1047

Query: 322  GRFGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
             R      + S  +         +             G    V ++  L    A      
Sbjct: 1048 TRIAKTYAERSSATNKRALYDSYIRAIRWSSDRIGDCGVIGFVTNAGFLDANTANG---- 1103

Query: 377  IRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGK 421
            +R+ L E      +  L  +              +F   +     + ++      + +G+
Sbjct: 1104 LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISLMVKNPNAKEQGR 1163

Query: 422  VQLINATDLWTSIRNEGK 439
            +   +  D  T  +   +
Sbjct: 1164 ILFHDIGDYLTREQKLKR 1181


>gi|301063312|ref|ZP_07203857.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
 gi|300442609|gb|EFK06829.1| N-6 DNA Methylase [delta proteobacterium NaphS2]
          Length = 1020

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 136/462 (29%), Gaps = 91/462 (19%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV---SEGAEDFMTPRDVVHLATALLLDPD 195
           +F         +P   +S IYE  +     +     + A  + TP          +L+  
Sbjct: 273 HFDFQAYDFSYIPIETLSIIYEQFLHSSEEDGTTKGKKAGAYYTPLP----LVNFVLNEL 328

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD---------CGSHHKIPPILVPHGQE 246
           +  +    G      DP+CG+G FL      + +           +      +    G +
Sbjct: 329 ETRYPLVEG--MRTLDPSCGSGAFLVQCYRALVEKRLAKNGSILPTELSELLVRHIFGVD 386

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKN-------IQQGSTLSKDLF----------TG 289
            + +   V    +L+  L+     DL  N       ++  +    D F            
Sbjct: 387 RDGDACRVAEMSLLLTLLDYTDPPDLENNPRFKLPVLRGSNIFEADFFDPSSKWVARSNN 446

Query: 290 KRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             FH+ + NPP+ +   +  +D   +E           G  +I++           K   
Sbjct: 447 LSFHWLVGNPPWREFNSKNQEDRDVREWATQHADSCPVGGNQIAEA-------FVWKSLP 499

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
             N    A IVL +  LF   +    +  R+                  FFRT  A  + 
Sbjct: 500 LLNESAVAGIVLPAMTLFKFES----ANFRKQ-----------------FFRTVRAWCVA 538

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
             SN       G+ +L   T  ++     G     +  +   +IL  +      + +   
Sbjct: 539 NFSNLAYVLFSGRAELPAMTLFFSPETESG-----VAGEHNDKIL-TFAPFVVNQKA--- 589

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                   R    R  R ++ +  +G     ++I+  K +      W         ++  
Sbjct: 590 -------NRSTRERSKRDTWSIVVSGSE--LSEISVAKAATGEMRPW---------KLAM 631

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
           +G                +LK       +      F  +DP 
Sbjct: 632 WGTFRDEKLLRRIERRFPSLKTFLKSKGLTQPHQGFELRDPT 673


>gi|34558224|ref|NP_908039.1| hypothetical protein WS1930 [Wolinella succinogenes DSM 1740]
 gi|34483943|emb|CAE10939.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 615

 Score = 54.2 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 76/238 (31%), Gaps = 29/238 (12%)

Query: 97  RNNLESYIASFSDNA----KAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHP 147
              + +Y+  ++       + +   + + + +   +   +L  +      + +  +    
Sbjct: 2   NQKIFNYLKKYNKEVFPMNRLLVSTYIYLNKLEVKKNKKILDLLIYEQNEEEYKSLNEFM 61

Query: 148 DTVPDRVMSNIYEHLIRRF----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
             V +      YE L+  F                TP+D+    T    +          
Sbjct: 62  LLVKEIERDFTYEDLLELFEFVISPSDKLVNGAIYTPKDIREFITHQAFEQHRNNQNIY- 120

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADC-GSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                + D +CG GGFL DA   + +     +K        G +++P  +++    +L+ 
Sbjct: 121 --DFKIADISCGCGGFLIDATKVLKEKTNKSYKQIYKENIFGVDIQP--YSIERTEVLLT 176

Query: 263 RLESDPRRDL---SKNIQQGSTLSKDLFTGKR-------FHYCLSNPPFGKKWEKDKD 310
            L  +   D      ++    +L  D +           F   L NPP+      D+ 
Sbjct: 177 LLAIEYGEDEEIFDFHLYDADSLEFDWYKENSQIEVSNGFDIILGNPPYVCSRNMDEK 234


>gi|269125713|ref|YP_003299083.1| putative type II DNA modification enzyme [Thermomonospora curvata
           DSM 43183]
 gi|268310671|gb|ACY97045.1| putative type II DNA modification enzyme [Thermomonospora curvata
           DSM 43183]
          Length = 1219

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 63/226 (27%), Gaps = 51/226 (22%)

Query: 109 DNAKAIFEDFDFSSTIAR--LEKAGLLYKI--CKNFSGIELHPDTVPDR------VMSNI 158
                +FE     + +    L+   LL  I         + H     D        + ++
Sbjct: 204 PALGGLFEQTGIDALLHECSLDDEHLLEAIRSLSQVRDHKTHRTLWVDFARMDVEELGSL 263

Query: 159 YEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKES 202
           YE L+               RR G    + +  + TP  +V       LDP  D   +  
Sbjct: 264 YESLLEHVPGYDPAERAFVLRRLGGNERKISGSYYTPPSLVEALLDAALDPVIDDALESG 323

Query: 203 PGMIR--------TLYDPTCGTGGFLTDAMNHV----------------ADCGSHHKIPP 238
                        T+ DP CG G FL  A   +                       +   
Sbjct: 324 RTAAERERALLSLTVCDPACGPGRFLVAAARRIAGRLAFVRTGDPRPPARQVRRALREVI 383

Query: 239 ILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLS 283
               +G +L P    +    + +       P   L  +++ G+ L 
Sbjct: 384 AGCVYGVDLNPMAIELAKVSLWLEAGEPGRPLSFLDAHLKVGNALL 429


>gi|119490856|ref|ZP_01623139.1| type I restriction-modification system, M subunit, putative
           [Lyngbya sp. PCC 8106]
 gi|119453674|gb|EAW34833.1| type I restriction-modification system, M subunit, putative
           [Lyngbya sp. PCC 8106]
          Length = 1045

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 86/285 (30%), Gaps = 57/285 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S+IYE  + +       G     TP  +V      +L  D   +         + DP C
Sbjct: 337 ISSIYEEFVSK-----KSGTGVHYTPEHIVDFVLDGVLPWDSQEWDIK------ILDPAC 385

Query: 215 GTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           G+G FL  A   +              S  K        G +++ +   V    + +  L
Sbjct: 386 GSGIFLVKAFQRLIYRWEQAHPRTIQPSDLKYLLENNLFGVDVDAQAVRVASFSLYLTML 445

Query: 265 ESDPRRDLSKN-----------IQQGSTLSKDL------FTGKRFHYCLSNPPFGKKW-E 306
           +    +   +N           +       +D           ++   + N P+G+    
Sbjct: 446 DKVEPQYYWENEFRFPRLRERQLVAADFFKEDKEGFRSVQDAAKYDLVVGNAPWGRNTVT 505

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
               +   +      G  GP          LFL   A   +     GG+ A++  +  L 
Sbjct: 506 PAAKSWAGDVWTITYGNIGP----------LFLPKAAALTKP----GGQVAMMQPALALI 551

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLW 408
             + G+   E R  L     IE IV L      LF        + 
Sbjct: 552 FNQVGTA-QEFRARLFSEFKIEEIVNLSALRFGLFKDAISPACII 595


>gi|294673845|ref|YP_003574461.1| hypothetical protein PRU_1135 [Prevotella ruminicola 23]
 gi|294472602|gb|ADE81991.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 923

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 107/390 (27%), Gaps = 90/390 (23%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
           F+ TI   +    L +     + ++     +   +   ++E  +     E         T
Sbjct: 272 FAETIEIPQFTDELKQTLLQNASLDFDWSEISPTIFGAVFESTL---NPETRRSGGMHYT 328

Query: 180 PRDVVHLATALLLDPD-----DALFKESPGMIR--------------TLYDPTCGTGGFL 220
             + +H     L   D     D +  E     R              T  DP CG+G FL
Sbjct: 329 SIENIHKVIDPLFLNDLRAELDEILDEKVEKQRVRKLDAYQDKLASLTFLDPACGSGNFL 388

Query: 221 TDAMNHVADCGSHHKIPP-----------------ILVPHGQELEPETHAVCVAGMLI-- 261
           T+    +    +                       I   +G E+      V    + I  
Sbjct: 389 TETYLSLRRLENEAIRSKYHDQTMIGAFMNPIKVSIHQFYGIEINDFAVTVATTALWISE 448

Query: 262 -----------RRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEK 307
                         ++        NI +G+ L  D           Y + NPPF      
Sbjct: 449 AQMMAETEKIVTFEDNFLPLKSYSNIHEGNALRTDWETVVPKSHLTYIIGNPPF-----V 503

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG---RAAIVLSSS- 363
             + +    +      FG     I +   +        L+      G   R A+V ++S 
Sbjct: 504 GANIMNDNQRADIRSIFGSKWKNIGEMDYV----TGWYLKATQMMHGTDIRTALVSTNSI 559

Query: 364 -----------PLFNGRAGS--GESEIR---RWLLENDLIEAIVALPTDLFFRTNIATYL 407
                      PLF             R      L+  +   I+      F  TN    +
Sbjct: 560 SQGEQVANLWKPLFEEGVHIDFAHRTFRWDSEASLKAHVHCVIIG-----FSCTNDKHTM 614

Query: 408 WILSNRKTEERRG-KVQLINATDLWTSIRN 436
            I  N K  +       L++A +++   ++
Sbjct: 615 TIYDNAKEHKASNINAYLMDAPNVFVESKS 644


>gi|255034967|ref|YP_003085588.1| N-6 DNA methylase [Dyadobacter fermentans DSM 18053]
 gi|254947723|gb|ACT92423.1| N-6 DNA methylase [Dyadobacter fermentans DSM 18053]
          Length = 493

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 25/222 (11%)

Query: 171 SEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH-VA 228
            +      TP  +V  +         D   K        + DP CG G FL       + 
Sbjct: 11  KKLLGQVYTPFHIVDKILGHCGFYEADLSEK-------RMLDPACGNGRFLVPMAEFIIR 63

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +         +   HG +++ +    C     +  L +    ++  N+++   L +   +
Sbjct: 64  NTPPDRVAERLQQLHGWDVDRKALQQCREN--LDALVAPLGLEIDWNLRKCDALKQ-WRS 120

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F   + NPP+ +     +   +   K+     +       +D  + F       L  
Sbjct: 121 KDKFDLIIGNPPYIRIQHLPETQRKYIQKH-----YSFCSTGSTDAFIAFFQLATRLLAP 175

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                G   ++  +S L           +R++  ++  ++ I
Sbjct: 176 D----GLCGMITPNSFL----VSESGGPLRKYFYKHQNLKHI 209


>gi|32141309|ref|NP_733709.1| hypothetical protein SCO6627 [Streptomyces coelicolor A3(2)]
 gi|24413913|emb|CAD55384.1| hypothetical protein [Streptomyces coelicolor A3(2)]
          Length = 1210

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 95/313 (30%), Gaps = 79/313 (25%)

Query: 134 YKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
             +  +F+        +    R + ++Y+ L         +      TP  V        
Sbjct: 168 GALVHDFTDPLSADGTEGWGTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRT 223

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------P 242
           ++P    F         + DPTCG+G F+  A   +   G  ++    +           
Sbjct: 224 MNPAVREFGYEE---LKMIDPTCGSGHFVLGAFRRLVRLGGENQPGKDVHQRVRAALDSV 280

Query: 243 HGQELEPETHAVCVAGML--------IRRLESDPRRDLSKNIQQGSTL------------ 282
           HG ++ P   A+    +L        +R L+   + +   ++  G +L            
Sbjct: 281 HGVDINPFAVAIARFRLLVAAMAASGVRTLDEASKYEWPVHLAVGDSLIKSGSQQGSLFG 340

Query: 283 -SKDLFTGK---------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
            S D  T +                     R+H  + NPP+    +K  +A+ +E     
Sbjct: 341 ESDDDLTDELAEFKYATEDVGEHPEMLRPGRYHVVVGNPPYITVKDKSLNALYRELYPAC 400

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGG---GRAAIVLSSSPLFNGRAGSGESEI 377
            G++   +P        F        +     G   G    + ++S +          E 
Sbjct: 401 AGKYALSVP--------FAQRFFELAKREDAEGSGYGMVGQITANSFMKR--------EF 444

Query: 378 RRWLLENDLIEAI 390
              L+E     A+
Sbjct: 445 GTKLIEGYFGHAV 457


>gi|195867898|ref|ZP_03079897.1| N-6 DNA Methylase family protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|195660475|gb|EDX53733.1| N-6 DNA Methylase family protein [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
          Length = 543

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 57/389 (14%), Positives = 127/389 (32%), Gaps = 59/389 (15%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS-----TIARLEKA-GLLYKICK 138
           E+ +  + + N   N++S I   S N    F  ++         I  LEK   L+ +   
Sbjct: 8   EFQMEDIKTKN-DKNIKSKI-ILSQNEIDKFSRYNIEDYQYDIEILGLEKTWNLICEYIL 65

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            F   E   +         +YE  +        + +  + TP DV  +    L+  D   
Sbjct: 66  LFGENENFLNINN---FGEMYEIGLAIRDKHQKKTSGQYYTPDDVAKVMAKWLIKSD--- 119

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                     + D  CGTG  +   ++ +    +   I      +  + +     +C   
Sbjct: 120 -------GINVCDVGCGTGKLILTYLDLIGYENAR-NIIKKGNLYLYDFDNIALKICKTS 171

Query: 259 MLIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           + ++        D+  NI   +     +     +    +SNPP+    E  ++  + +  
Sbjct: 172 IALK-----YGIDIMNNINDINCDFLNEKIILPQDSKVISNPPYSIIHEIKEEWDKTQVL 226

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 +             F+  +  + +          I+   S + + +  S    +
Sbjct: 227 LETKELYS-----------SFMEKIFLQSKS-------VVIITPFSFISSKKFFS----L 264

Query: 378 RRWL--LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           R+ +    N  I +   +P ++F+         I ++  T   R  +     +  +   R
Sbjct: 265 RKLMCSTGNGFIVSFDNVPGNIFYGRKHG----IFNSNTTNSVRASITFFQKSSNYYGFR 320

Query: 436 NE---GKKRRIINDDQRRQILDIYVSREN 461
                  K+    +    +IL+ Y+S++N
Sbjct: 321 LSPLIRFKQTERENLLNNEILESYISKKN 349


>gi|296115678|ref|ZP_06834304.1| putative type II DNA modification enzyme [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977655|gb|EFG84407.1| putative type II DNA modification enzyme [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 768

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAM 224
                +  + TP  +V       LDP     + S G        + DP CG G FL  A 
Sbjct: 208 NDRRTSGSYYTPDSLVQSLLDSTLDPVMDRAEASGGAAALLALRVIDPACGGGHFLLAAA 267

Query: 225 NHVADCGSHHKIPPILV------------PHGQELEPETHAVCVAGMLI-RRLESDPRRD 271
             +A     H  P                 +G +  P    +    + I   +   P   
Sbjct: 268 RRMAMRIVRHHAPKGGEYRTILRDVVARCIYGVDCNPMAVELTRMALWIETGIPGRPLCF 327

Query: 272 LSKNIQQGSTLS 283
           L+ NI  G+ L 
Sbjct: 328 LAANILCGNALL 339


>gi|145639576|ref|ZP_01795180.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae PittII]
 gi|145271367|gb|EDK11280.1| possible type I restriction enzyme M subunit [Haemophilus
           influenzae PittII]
          Length = 253

 Score = 54.2 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 26/187 (13%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
            LY I           +      + +++  L         E    + TP  + HL  A+ 
Sbjct: 69  RLYNII------VEALEHKTYDFLGSVFMAL-----DLGDEYKAQYFTPSHIAHLMAAVT 117

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
           L    +L K       TL +PTCG+G  + +A N++ +          +    ++L+   
Sbjct: 118 LSDCHSLIK--KRGFLTLQEPTCGSGVMIIEAYNYLRE--EDFNPQQQMWAQARDLDFTA 173

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKD 310
             +C   M +  +  +        +  G+TL  +  +      + + N  + KK E    
Sbjct: 174 ALMCYIQMTLLHIPGE--------VIIGNTLKDEVNYHLYTPAHIMGN--WNKKLESADS 223

Query: 311 AVEKEHK 317
             E E++
Sbjct: 224 YTEAEYQ 230


>gi|307947067|ref|ZP_07662402.1| type II restriction enzyme, methylase subunit [Roseibium sp.
           TrichSKD4]
 gi|307770731|gb|EFO29957.1| type II restriction enzyme, methylase subunit [Roseibium sp.
           TrichSKD4]
          Length = 1311

 Score = 53.8 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 77/298 (25%), Gaps = 56/298 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L   E          + +  A       L+S  K      Y  + +          +
Sbjct: 283 LIFLMVAEDRNLLHPEKAKPEARALYAQGYSLQSLRKQC----YRAATWDKHHDRYEGVK 338

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL-----------LYKICKNFSGIELH 146
               +        A            +  LE A L           L  +      + ++
Sbjct: 339 IVFRALTQGQPALALPALGGLFAEDRLPHLETARLRNRAFMEALYRLSWLADKAGMVPVN 398

Query: 147 PDTVPDRVMSNIYEHLIR------------RFGSEVS-------EGAEDFMTPRDVVHLA 187
              +    + ++YE L+              F SE +       +    + TP  +V   
Sbjct: 399 WRAMETEELGSVYESLLELQPQLGDDGKTLVFASEAAEQKGNQRKTTGSYYTPDSLVQAL 458

Query: 188 TALLLDPDDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---- 237
               LDP     +          +  ++ DP CG+G FL  A   +A   +  +      
Sbjct: 459 LDTALDPVLDKTEGEADDPAKALLKLSVIDPACGSGHFLLAAARRIATRLARIRAEGTPS 518

Query: 238 -----------PILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283
                           HG +  P    +    + I  ++   P       I+ G  L 
Sbjct: 519 LADFRHALRDVARCCIHGVDRNPMAVELTKVALWIETVDPGLPLGFFDAQIRCGDALL 576


>gi|293571357|ref|ZP_06682388.1| adenine-specific methyltransferase [Enterococcus faecium E980]
 gi|291608573|gb|EFF37864.1| adenine-specific methyltransferase [Enterococcus faecium E980]
          Length = 335

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 109/341 (31%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E A  +  + +    +   P+         + 
Sbjct: 27  SFLEAYVENAENLIDDYQVRVVDGVPTKETAQRITALYEELKKLSFEPEEWR-----RLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 82  QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 136

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 137 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 179

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278

Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435
           +LF        + IL  +    ++  +V L+    L    +
Sbjct: 279 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 319


>gi|10957433|ref|NP_051667.1| hypothetical protein DR_B0137 [Deinococcus radiodurans R1]
 gi|6460862|gb|AAF12566.1|AE001826_35 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 609

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 39/172 (22%)

Query: 151 PDRVMSNIYEHLIR---------RFG-----SEVSEGAEDFMTPRDVVHLATALLLDP-- 194
               + +IYE L+          RF          +    + TP  ++ L     LDP  
Sbjct: 397 DSEELGSIYESLLELVPRIEPGPRFSLTVLPGNERKSTGSYYTPGSLIDLLLDSALDPVI 456

Query: 195 DDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHV----------------ADCGS 232
           +DA+  + P           + DP CG+G FL  A   +                     
Sbjct: 457 EDAVRDKLPEDAIAALKGLKVIDPACGSGHFLIAAARRIGARLAELEEETSLPSPRALRK 516

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLS 283
             +       +G ++ P    +    + +   +   P   L   ++ G++L 
Sbjct: 517 ATRTVIAHCIYGADINPMAIELAKVALWLESQDAGRPLAFLDHRLRVGNSLL 568


>gi|49476200|ref|YP_034241.1| hypothetical protein BH15450 [Bartonella henselae str. Houston-1]
 gi|49239008|emb|CAF28308.1| hypothetical protein BH15450 [Bartonella henselae str. Houston-1]
          Length = 1653

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 88/295 (29%), Gaps = 34/295 (11%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             + ++ +       LEK    Y   K  +     P      ++  +Y+   R       E
Sbjct: 816  DVLDEANLDKESKDLEK---FYASVKLRASGITDPQAKQRLII-ELYDKFFRYAFPRTVE 871

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V      + D   A F ++ G     + DP  GTG F+T  +       
Sbjct: 872  KLGIVYTPVEIVDFILRSVNDVLQAEFGQTLGAPGIHIMDPFTGTGTFITRLLQSGLITP 931

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------------LESDPRRD 271
               K       H  E+    + +    +      LI                   +  +D
Sbjct: 932  EEMKHKFCHEIHANEIVLLAYYIAAINIETTYHGLIGGDYVPFEGICLTDTFQLYEQEKD 991

Query: 272  LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH--KNGELGRFGPGLP 329
            L  ++   ++  +    G      + NPP+    + + D  +     K     R      
Sbjct: 992  LISDLLVDNSTRRSRQKGLDIRVIVGNPPYSSGQKSENDNAKNIGYPKLDRCIRETYAAQ 1051

Query: 330  KIS---DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
              +   +G     +             G    V ++  + NG + +G   +R+ L
Sbjct: 1052 SKASNVNGLYDSYIRAIRWASDRIKDCGVIGFVTNAGFI-NGYSTNG---LRKEL 1102


>gi|328952480|ref|YP_004369814.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328452804|gb|AEB08633.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 1094

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 79/267 (29%), Gaps = 47/267 (17%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCG 215
           YE  +  +  E  +    + TP  VV      +       F    G       + DP CG
Sbjct: 303 YETFLAAYDPEKRKVRGVYYTPEPVVSYIVRAIDHVLKEGFSRPWGLADPNTLILDPACG 362

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPH----------GQELEPETHAVC--VAGMLIRR 263
           TG FL   +  + D             +          G EL    +AV     G+ ++ 
Sbjct: 363 TGTFLHSVIALMYDTLCAQGQAGGWRAYVSDSLLPRVFGFELLMAPYAVAHVKLGLALQE 422

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFT----------------------GKRFHYCLSNPPF 301
              D        +   +TL + L                         +     L NPP+
Sbjct: 423 RGYDFPMGRRLGVYLTNTLEEALKKSQVLPLAGFITEESNTAAAIKQDEPIEVILGNPPY 482

Query: 302 GKKWEKDKDAVE---KEHKNGELGRFGPGLPKISDGSML-FLMHLANKLELPPNGGGRAA 357
             +     D +    K++K  +        PK      + FL     +L     G G  A
Sbjct: 483 SVQSANKGDWIRSLIKDYKKVDGLPLDEKNPKSLQDDYVKFLRWGQWRL--DRTGQGVLA 540

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLEN 384
           ++ +   L N         +R+  L++
Sbjct: 541 MITNHGYLDNATFRG----MRQAFLKS 563


>gi|307244208|ref|ZP_07526323.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492358|gb|EFM64396.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 116

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLEC-ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF 80
           +    +  ++   IL F   + L    ++  +    +          D++    V     
Sbjct: 1   MRSKIEANEYKDYILGFIFYKYLSDQEIKFLKENDFDDADIKDLREDDIDILEYVQRNIG 60

Query: 81  YNTSEY----SLSTLGSTNTRNNLESYIASFS 108
           Y  S      +  + G     +++   +++F+
Sbjct: 61  YFISYENLFSTWISKGRDFDVSDVRDALSAFN 92


>gi|170760713|ref|YP_001788411.1| modification methylase family protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169407702|gb|ACA56113.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 577

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 90/300 (30%), Gaps = 58/300 (19%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           +  +  +       +  +S  Y  LI+       +      TP+++ +      ++ +D 
Sbjct: 26  EAINNFKYKLSIGKNENISLKYYELIK-----GKKETGVIYTPQEISNYMIENTINKED- 79

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------KIPPI 239
                      + DP+CG G  L     ++ +    +                  K    
Sbjct: 80  ---VINNPFIKILDPSCGCGNILIPCFFYLKNIFEENLKEINKKNNINLEKQYISKHILD 136

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
              +G +++     +    +               N ++   L +D+     F   + NP
Sbjct: 137 NNLYGFDIDTIAIKILTIDLF-----CLTGYYNENNFKKKDFLMEDI--NNNFDIYIGNP 189

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           P+         +V+KE+      ++G       D S  F ++  N      N   +   +
Sbjct: 190 PY-----VGHKSVDKEYSVLLKEKYGYIYKDKGDISYCFFINALN----YSNINSKITFI 240

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR------TNIATYLWILSNR 413
            S   + +         +R++L EN  I  I+      F+         I   +  +   
Sbjct: 241 TSRYFMESKSGH----NLRKYLKENCNIYKILD-----FYGIRPFKAVGIDPAIIFIDRN 291


>gi|67920386|ref|ZP_00513906.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67857870|gb|EAM53109.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 179

 Score = 53.8 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418
           +    LF   +      IR+ L+E+  ++ ++++P+ +F     ++T + I +       
Sbjct: 1   MPDGVLF--GSSKAHKTIRKTLVEDHKLDGVISMPSGVFKPYAGVSTAILIFTKT-GVGG 57

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
              V   +   +     +   KR+ I  +    I+  +  RE
Sbjct: 58  TDYVWFYD---MEADGFSLDDKRQKIEKNDIPDIIKCWKERE 96


>gi|163868246|ref|YP_001609455.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017902|emb|CAK01460.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1643

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 92/319 (28%), Gaps = 37/319 (11%)

Query: 43   RLECALEPTRSAV--------REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
            RL+  L   +S          +E       S    ++   +A +     +     +L   
Sbjct: 753  RLKSILADKKSEAYRAFHAFHKELKNGLNDSIEQEDALEMLAQHL---VTRPIFESLF-D 808

Query: 95   NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                  ++ I+   +   +  +  +       LEK    Y+  K+ +   +      + +
Sbjct: 809  GNEFVSKNAISQAMEKILSELDKMNIKDEAKDLEK---FYQSVKDDTEEIIETRAKQNLI 865

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213
            +  +YE    +   + ++      TP ++V      + D  +  F +S      ++ DP 
Sbjct: 866  I-KLYEDFFTKAFKKTTDKLGIVYTPIEIVDFILHSVNDVLEQEFGQSLSSRGVSILDPF 924

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-L 272
             GTG F+T  +          +          E+    + +    +              
Sbjct: 925  TGTGTFITRLLQSGLIKPEDMEYKFRNEIKANEIVLLAYYIAAINIESTYHSLMKGDYIP 984

Query: 273  SKNIQQGSTLS----KDLFTGKRF--------------HYCLSNPPFGKKWEKDKDAVEK 314
             + I    T      KD FT   F                 + NPP+    +   D    
Sbjct: 985  FEGICLTDTFLMLEEKDFFTRYMFENSERCKKQQEADIQVIVGNPPYSVGQKNANDNNPN 1044

Query: 315  -EHKNGELGRFGPGLPKIS 332
              +       +   + + S
Sbjct: 1045 VRYDTLNDSIYKQYITRSS 1063


>gi|307293025|ref|ZP_07572871.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium chlorophenolicum L-1]
 gi|306881091|gb|EFN12307.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium chlorophenolicum L-1]
          Length = 269

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 48/171 (28%), Gaps = 12/171 (7%)

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGI 143
           + L  L S     +  S   S     +   E    D      R     ++    + F+ I
Sbjct: 22  HDLHRLFSDCMEASAISISNSMDLRNREAREKRYLDIVGQYER----DIVELFPQVFAEI 77

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-LLLDPDDALFKES 202
            +  +  P   +  +Y +L        S     F TP  +  +     L  P       +
Sbjct: 78  MMALEAEPRDALGTVYNNL-----ELSSADKGQFFTPWPICQMMAEATLGGPKLIQDLIA 132

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
                   +P CG G  +      +   G +++    +     +      A
Sbjct: 133 CKGFVRAMEPACGAGATVIALAQTMRAQGINYQRHLHVTAVDIDARVAHMA 183


>gi|37525131|ref|NP_928475.1| hypothetical protein plu1163 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784557|emb|CAE13457.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 240

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 57/162 (35%), Gaps = 20/162 (12%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           + E A    ++ ++   + +  +  P   +  ++  L     +  ++  + F TP  +  
Sbjct: 70  KPEDASRFSQLLEH---VMMGLEFEPHDFLGGVFMQL-----NLGNKHLKQFFTPWPISL 121

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           +   + L   +    + P    TLY+P CG G  +  A   +   G +      +     
Sbjct: 122 VMAKMQLSDVEQRLTKQP--FFTLYEPACGAGCMVIAAAEVLKMSGYN--PAQHMWVSCV 177

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           +++    ++    + +  +  +        +  G  L+ +  
Sbjct: 178 DIDVVAASMAYIQLSLLGIPGE--------VVIGDALTNERH 211


>gi|265763823|ref|ZP_06092391.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256431|gb|EEZ27777.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 248

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 19/146 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
               L    + F+ + +  D  P      + ++  +       +     F TP  V  L 
Sbjct: 54  DKTELDLFSQAFAALVMQMDRQPLVDPFGDYFQEFL------SNAQNGQFFTPFGVCELM 107

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L+  P   +  +     R + DP CG+G  L  A           +    L   G ++
Sbjct: 108 NQLITAPK--VNDQPKQGDRRVLDPACGSGRLLLSA----------AQKDRALTFVGIDI 155

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLS 273
                 + +  + +  L  +     +
Sbjct: 156 SYTCCLMTIINLCLNSLNGEVLHMNA 181


>gi|213865304|ref|ZP_03387423.1| hypothetical protein SentesT_36419 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 371

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A  + ++    S + +  +  P   +  IY           +     + TP  V +  
Sbjct: 204 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 255

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             + L               T+ DP  G G  +      + + G +      +V +  ++
Sbjct: 256 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 313

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +P    +C   + +  + +      S  ++    ++  +F   R+H
Sbjct: 314 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 359


>gi|213649083|ref|ZP_03379136.1| hypothetical protein SentesTy_18458 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 359

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A  + ++    S + +  +  P   +  IY           +     + TP  V +  
Sbjct: 192 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 243

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             + L               T+ DP  G G  +      + + G +      +V +  ++
Sbjct: 244 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 301

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +P    +C   + +  + +      S  ++    ++  +F   R+H
Sbjct: 302 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 347


>gi|213620682|ref|ZP_03373465.1| hypothetical protein SentesTyp_25602 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 469

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A  + ++    S + +  +  P   +  IY           +     + TP  V +  
Sbjct: 302 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 353

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             + L               T+ DP  G G  +      + + G +      +V +  ++
Sbjct: 354 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 411

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +P    +C   + +  + +      S  ++    ++  +F   R+H
Sbjct: 412 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 457


>gi|16763059|ref|NP_458676.1| hypothetical protein STY4592 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144542|ref|NP_807884.1| hypothetical protein t4286 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213427259|ref|ZP_03360009.1| hypothetical protein SentesTyphi_17642 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|224586142|ref|YP_002639941.1| hypothetical protein SPC_4447 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|25512608|pir||AE1033 hypothetical protein STY4592 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505366|emb|CAD09366.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140180|gb|AAO71744.1| hypothetical protein t4286 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|224470670|gb|ACN48500.1| hypothetical protein SPC_4447 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 649

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A  + ++    S + +  +  P   +  IY           +     + TP  V +  
Sbjct: 482 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 533

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             + L               T+ DP  G G  +      + + G +      +V +  ++
Sbjct: 534 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLEAGFN--PQKQMVAYCVDI 591

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +P    +C   + +  + +      S  ++    ++  +F   R+H
Sbjct: 592 DPVASMMCYIQLSLMGIPAIVATGNSLTVEIKREMATPMFVLGRWH 637


>gi|229892402|gb|ACQ89838.1| helicase [Enterococcus faecalis]
          Length = 2727

 Score = 53.8 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 87/317 (27%), Gaps = 64/317 (20%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYE 160
              F  N  A+    D +  + +A  E+  +L         S      +         +Y 
Sbjct: 1155 EKFKANMAAVNFLHDLEIENRLATPEEQKILAGYVGWGGLSMAFDENNAAWANEFKELYV 1214

Query: 161  HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L    + +        F TP  V+      L          S G    + +P+CGTG F
Sbjct: 1215 TLSPEEYRAAKESTLTAFYTPPVVIKAMYEAL-----DRLGFSEG---NILEPSCGTGNF 1266

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 + +               HG E++  T  +              +     NI   
Sbjct: 1267 FGLLPDSM----------ANSKLHGVEIDSLTGRIAK------------QLYQKANIAIE 1304

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                K       F   L N PFG                    R+     +I D      
Sbjct: 1305 -GFEKTKLPDDHFDVVLGNVPFG-------------DFRVNDSRYNAQNFRIHD------ 1344

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
                 K       GG    + S   +          E+R+++ +   +   + LP + F 
Sbjct: 1345 -FFFAKALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFR 1398

Query: 399  --FRTNIATYLWILSNR 413
                T + + + IL  R
Sbjct: 1399 ANAGTEVTSDILILQKR 1415


>gi|330814767|ref|YP_004362942.1| hypothetical protein bgla_4p3670 [Burkholderia gladioli BSR3]
 gi|327374759|gb|AEA66110.1| hypothetical protein bgla_4p3670 [Burkholderia gladioli BSR3]
          Length = 223

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 20/156 (12%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           + +L  +   F  +    +     V+ ++Y  L        S  A  F TP  V  +   
Sbjct: 31  SEMLANLMLAFLDLSKMGEFAD--VLGSLYMRL-----ELGSSRAGQFFTPYHVSRMMGQ 83

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +                 T+ DP CG GG +    +     G  H+          ++  
Sbjct: 84  I---QVGDGTDMRAREFVTVSDPACGAGGMIIAFADAARSVGLDHRACMHATCIDIDIRC 140

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              A     +L          D+   +  G+ L+ D
Sbjct: 141 VHMAYVQLSLL----------DIPAVVIHGNALASD 166


>gi|301058390|ref|ZP_07199411.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300447446|gb|EFK11190.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 848

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/392 (13%), Positives = 118/392 (30%), Gaps = 65/392 (16%)

Query: 42  RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
           ++L+  L+ T  +    Y      N   ++ +    + F     +         + ++  
Sbjct: 160 KKLDRLLKETLLSGVNAYREVNSGNSPNDTELFRLVFRFLAAKIFRDKKHPGDWSSSDPR 219

Query: 102 SYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           + I     N +     +     + I   +     +           +   + +  ++ +Y
Sbjct: 220 TVID----NVQKFYGLDKISSGAIIDEPQTQQATWDYL----RNAFNFQNLSEEDLAFVY 271

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E+ +     +  +      TP  V  L    L   D ++ +      R + +P  G G F
Sbjct: 272 ENTL--VTKKARKEHGIHATPSVVAELIVDRLPFEDLSINE------RFVLEPCAGHGVF 323

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQE----LEPETHA--VCVAGMLIRRLESDPRRDLS 273
           L  A+  + +             + ++    +E ++ A  VC   + +    +    +  
Sbjct: 324 LVAALRRLRELLPSSWTAQERHAYLKKRLKAIELDSFAGEVCRLSLTLADYPNPDGWE-- 381

Query: 274 KNIQQGSTLSKDLFTG--KRFHYCLSNPPF----GKKWEKDKDAVEKEHKNGELGRFGPG 327
             I Q      D+      +    L NPPF     ++ ++ +  ++  HK  E+ R    
Sbjct: 382 --IVQTDVFGTDVLENSLPQSRIVLCNPPFEDFSEQERKRYESRIQSVHKPYEVLRRVIA 439

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL- 386
            P                              +    L       G  +  + LL     
Sbjct: 440 NPPA----------------------------MLGFVLPKSAIIGGRYDSLQNLLGKCYT 471

Query: 387 -IEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            +E + +LP  +F  ++  T L +        
Sbjct: 472 CVETV-SLPDRIFAFSDQETMLLLAYKADPSR 502


>gi|12837533|gb|AAK08957.1|AF306668_2 restriction endonuclease BseMII [Geobacillus stearothermophilus]
          Length = 922

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 126/405 (31%), Gaps = 48/405 (11%)

Query: 88  LSTLGSTNTRNNLE---SYIASFSDNAK---------AIFEDFDFSSTI-ARLEKAGLLY 134
           ++ L   +   N     + I     + K          I    DF +    +L +  +  
Sbjct: 232 MNKLLFAHILKNFREEAAIIDKIDLDTKPAEAVNIITDISSKCDFWNIFAPQLGEEHIPS 291

Query: 135 KICKNFSGIELHPDTVPDRVMSN--IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
            + +      +    +    +    I E L         + A  F TP+ +  L  AL +
Sbjct: 292 SVWEKIVHYNIFLTDLKLESVGQDLIQEILQSTIYRTHRKLAGQFTTPKKLADLLVALTI 351

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----PHGQELE 248
                           +YDP CGTG     A +   + G  +K               L+
Sbjct: 352 KNKRGN----------VYDPCCGTGTIARAAFDLKVESGISYKEALQTTWASDKFSFPLQ 401

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK------RFHYCLSNPPFG 302
             T A+     +   +    +       ++   LS  +   +      +    +SN PF 
Sbjct: 402 MATLALTNPKNIGEVINIFKKDISDLKAKEDIKLSNPVDGSEIIKQLPQMSSIVSNLPFV 461

Query: 303 KK--WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           ++   +K   ++ K   N      G G    +   +   +     L       GR  I++
Sbjct: 462 RQEVIKKLNPSIIKNINNKIKKALGKGYQLKAKSDLYAYLPFV--LWDLLKDDGRLGIII 519

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRTNIATYLWILSNRKTEERR 419
           S+S L        +  +R++      IEAIV       F   ++ T + IL+    +   
Sbjct: 520 SNSWLSTEWGVEFKKALRKFF----HIEAIVTSGKGKWFNNADVVTNILILNKINPKADS 575

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
               L      + ++  +   +   + +    I     +++  K+
Sbjct: 576 ----LEGKEISFVTLTEDIINKEYNDKNLINNIARSIRTKKKDKY 616


>gi|331017717|gb|EGH97773.1| Type I restriction enzyme (modification subunit) [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 571

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +++       RF       + G +  + H+  + E      GR  +++  S LF   
Sbjct: 216 KYKKEDLDRDSYQRFDHA---SAKGPLAAVFHILAQTE------GRVILLVPDSLLFKPG 266

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           A   E  +R +LL    +EA+V+LPT        A  + IL+     E   +V  +    
Sbjct: 267 A---ERSLREYLLTRQRVEAVVSLPTGAAQGLKGACSILILNTVLASE---QVLFVK--- 317

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFI 489
               + NE          + RQ+  +   R  G+FS ++           +     ++  
Sbjct: 318 ----VTNELLTNADTRTLKFRQVGALIRDRGEGRFSSLVKVNDLLTDDFNMEAARHVTGR 373

Query: 490 LDKTGLARLEADI 502
           +      + E   
Sbjct: 374 VTIHRQVQTEFTT 386


>gi|316932251|ref|YP_004107233.1| hypothetical protein Rpdx1_0868 [Rhodopseudomonas palustris DX-1]
 gi|315599965|gb|ADU42500.1| hypothetical protein Rpdx1_0868 [Rhodopseudomonas palustris DX-1]
          Length = 1487

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 55/241 (22%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR------------RFGSEVS-------E 172
            L  +      + ++   +    + ++YE L+              F SE +       +
Sbjct: 385 RLSWLSDKAGIVPVNWRAMETEELGSVYESLLELQPQLGEDGKTLHFASEAAEQKGNQRK 444

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMNH 226
               + TP  +V       LDP     +             ++ DP CG+G FL  A   
Sbjct: 445 ITGSYYTPDSLVQALLDTALDPVLDKTEAEADDPEQALLELSVIDPACGSGHFLLAAARR 504

Query: 227 VADCGSHHKIPPILV---------------PHGQELEPETHAVCVAGMLIRRLESD-PRR 270
           +A   +  +                      HG +  P    +    + I  ++   P  
Sbjct: 505 IATRLARIRAEGTPSLADFRHALRDVARSCLHGVDRNPMAVELTKVALWIETVDPGLPLG 564

Query: 271 DLSKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                I+ G  L         +D      +       P     ++       ++K  +  
Sbjct: 565 FFDAQIRCGDALLGVFDLKVLEDGIPDAAYK------PLTGGDKEVARHYANKNKREKAE 618

Query: 323 R 323
           R
Sbjct: 619 R 619


>gi|1171043|sp|P43423|MTC1_BACST RecName: Full=Modification methylase BseCI; Short=M.BseCI; AltName:
           Full=Adenine-specific methyltransferase BseCI
 gi|619639|emb|CAA56041.1| methyltransferase [Geobacillus stearothermophilus]
          Length = 579

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 82/254 (32%), Gaps = 30/254 (11%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  +  +    +L      FK     +  + DP CG G  L           
Sbjct: 14  KATGAHFTPDKLAEVIAKRIL----DYFKGEKNRVIRVLDPACGDGELLLAINKVAQSMN 69

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTL-SKDLFT 288
              +        G + + +   +    +     ++     +D  + + +G      ++  
Sbjct: 70  IQLE------LIGVDFDIDAINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNIEE 123

Query: 289 GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            +     ++NPP+   +    + A +   K    GR              FL+ +  +L+
Sbjct: 124 LEPVDIIIANPPYVRTQILGAEKAQKLREKFNLKGRVDLYQ--------AFLVAMTQQLK 175

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   ++ S+  L     GS     R++L+ N  I  I+ L    FF   +   +
Sbjct: 176 S----NGIIGVITSNRYLTTKGGGS----TRKFLVSNFNILEIMDLGDSKFFEAAVLPAI 227

Query: 408 WILSNRKTEERRGK 421
           +    +  E ++  
Sbjct: 228 FFGEKKNKEYQKEN 241


>gi|295110781|emb|CBL24734.1| DNA methylase [Ruminococcus obeum A2-162]
          Length = 2686

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 71/274 (25%), Gaps = 61/274 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +     F T   VV                        + +P+CG G F+   
Sbjct: 1138 EEYSAARASTLNAFYTSPTVVKAMYE--------ALGNMGLKQGNILEPSCGVGNFMGLL 1189

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               ++              +G EL+P +  +               +   KN        
Sbjct: 1190 PESMSAAN----------MYGVELDPVSGQIAK-------------QLYQKNRIAVQGFE 1226

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  +    F   + N PFG     D+          +                       
Sbjct: 1227 ETSYPDSFFDCVIGNVPFGAYQVSDRKYDRYHFMIHDY--------------------FI 1266

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A+V SS  +          E+R++      +   + LP + F     
Sbjct: 1267 AKSLDMVRPGGVVAVVTSSGTMDKQNP-----EVRQYFANRADLLGAIRLPNNAFQRNAN 1321

Query: 401  TNIATYLWILSNRKTEERR--GKVQLINATDLWT 432
            T++   +     R          VQL    + +T
Sbjct: 1322 TSVVADILFFQKRDRAAITEPDWVQLKTTPEGYT 1355


>gi|212640060|ref|YP_002316580.1| adenine-specific DNA methyltransferase BseCI [Anoxybacillus
           flavithermus WK1]
 gi|212561540|gb|ACJ34595.1| Adenine-specific DNA methyltransferase BseCI [Anoxybacillus
           flavithermus WK1]
          Length = 577

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 76/254 (29%), Gaps = 30/254 (11%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  +  +    +L      FK     +  + DP CG G  L           
Sbjct: 14  KATGAHFTPDKLAEVIAKRIL----NYFKGEEKRVIRVLDPACGDGELLLAINKVAQSMN 69

Query: 232 SHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              ++  +       +      +  +      +   +         N    +T       
Sbjct: 70  IQLELIGVDSDID-AINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNT-----EE 123

Query: 289 GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            +     ++NPP+   +    + A +   K    GR              FL+ +  +L+
Sbjct: 124 LEPADIIIANPPYVRTQILGAEKAQQLRKKFNLKGRVDLYQ--------AFLVAMTQQLK 175

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   ++ S+  L      S    IR++L+ N  I  I+ L    FF   +   +
Sbjct: 176 S----NGIMGVITSNRYLTTKGGES----IRKFLVLNFNILEIMDLGDTKFFDAAVLPAI 227

Query: 408 WILSNRKTEERRGK 421
           +    +  E ++  
Sbjct: 228 FFGEKKSKENQKEN 241


>gi|257888134|ref|ZP_05667787.1| adenine-specific methyltransferase [Enterococcus faecium 1,141,733]
 gi|257896975|ref|ZP_05676628.1| adenine-specific methyltransferase [Enterococcus faecium Com12]
 gi|257824188|gb|EEV51120.1| adenine-specific methyltransferase [Enterococcus faecium 1,141,733]
 gi|257833540|gb|EEV59961.1| adenine-specific methyltransferase [Enterococcus faecium Com12]
          Length = 339

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 108/341 (31%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E    +  + +    +   P+         + 
Sbjct: 31  SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 85

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 86  QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 141 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 183

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 184 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 230

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 231 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 282

Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435
           +LF        + IL  +    ++  +V L+    L    +
Sbjct: 283 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 323


>gi|119384265|ref|YP_915321.1| hypothetical protein Pden_1525 [Paracoccus denitrificans PD1222]
 gi|119374032|gb|ABL69625.1| hypothetical protein Pden_1525 [Paracoccus denitrificans PD1222]
          Length = 1459

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 77/298 (25%), Gaps = 56/298 (18%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              L   E          + +  A       L+S  K      Y  + +          +
Sbjct: 283 LIFLMVAEDRNLLHPEKAKPEARALYAQGYSLQSLRKQC----YRAATWDKHHDRYEGVK 338

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGL--------LYKICKNFSGIELHPDT 149
               +        A            +  LE A L        LY++        + P  
Sbjct: 339 IVFRALTHGQPALALPALGGLFAEDRLPHLETARLRNRAFMEALYRLSWLADKTGMVPVN 398

Query: 150 V---PDRVMSNIYEHLIR------------RFGSEVS-------EGAEDFMTPRDVVHLA 187
                   + ++YE L+              F SE +       +    + TP  +V   
Sbjct: 399 WRAMETEELGSVYESLLELQPQLCDDGKTLVFASEAAEQKGNQRKTTGSYYTPDSLVQAL 458

Query: 188 TALLLDPDDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHV-------------- 227
               LDP     +          +  ++ DP CG+G FL  A   +              
Sbjct: 459 LDTALDPVLDKTEAEADDPAKALLKLSVIDPACGSGHFLLAAARRIATRLARIREGGTPG 518

Query: 228 ADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283
            +   H  +       HG +  P    +    + I  ++   P       I+ G  L 
Sbjct: 519 LEHFRHALRDVARCCIHGVDRNPMAVELTKVALWIETVDPGLPLGFFDAQIRCGDALL 576


>gi|126697506|gb|ABO26710.1| TspGWI restriction endonuclease [Thermus sp. GW]
          Length = 1097

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 11/108 (10%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-------IRTL 209
             YE  +  +  E+ +    + TP  VV     L+    D L +   G          T+
Sbjct: 296 YFYEDFLEAYDPELRKDMGVYYTPVPVVRAMVQLV----DDLLRTKMGKPLGLAEEGVTV 351

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
            DP  GTG FL   ++           P +   +  E+    +A+ V 
Sbjct: 352 IDPAVGTGTFLLAVLDQALTNAEGRFGPGMRSHYATEVAHRLYALEVM 399


>gi|284097800|ref|ZP_06385789.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283830700|gb|EFC34821.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 720

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 22/206 (10%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           LL  + +           +       +Y  L++      +     F T      L T L 
Sbjct: 69  LLETLIEAVLDCAPRIRGLQLDHAGPLYHGLLQ-----TARYDGSFYTSTAAAVLLTELA 123

Query: 192 LDPD----DALFKESPGMIR-TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
           + PD       + ++  +I   + DP CGTG  L  A   + +              G E
Sbjct: 124 MPPDWPVVKDNWADAERLINLRVCDPACGTGTLLMAAARTIEERHR--------AFCGDE 175

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +  T  + +   ++  L+ +             TLS       + +  L +   G    
Sbjct: 176 ADLPTLHLGLIENVLHGLDINRHAIHLA--ASMLTLSAPKIDYNKMN--LYSMQHGVNTN 231

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKIS 332
            D  A   +    + G     +P  S
Sbjct: 232 GDVRAGSLDILVKDAGYLPGLVPDTS 257


>gi|315225841|ref|ZP_07867629.1| N-6 DNA methylase superfamily protein [Parascardovia denticolens
           DSM 10105]
 gi|315119973|gb|EFT83105.1| N-6 DNA methylase superfamily protein [Parascardovia denticolens
           DSM 10105]
          Length = 502

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 41/216 (18%)

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF- 287
           +     +       +G +L+P    +  A M+         +D S NI  G +L +  + 
Sbjct: 15  EQRDEIRTWAHHNLYGVDLDPINVKLSRALMI-------GAKDGSTNIVLGDSLREQKWG 67

Query: 288 ------------TGKRFHYCLSNPPFGKKWE------KDKDAVEKEHKNGELGRFGPGLP 329
                           +   L+NPPFG+K +      K       +H NG          
Sbjct: 68  EFPMFPPVIGSEADGSYDVVLTNPPFGEKLKIRTTDAKRAKYTICKHTNGGANSEQYADT 127

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           ++    ++F+      L      GGR  IVL  +  F+          R+W+ ++  +  
Sbjct: 128 ELG---LVFMERAYRLLAE----GGRLGIVLPETYFFSTSYRW----FRQWVDQHFDVIG 176

Query: 390 IVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQL 424
           ++ +P + F       T  ++++ +     +GKV L
Sbjct: 177 VMNVPMEAFQGFCRAKTNFYVMTKK---TTKGKVIL 209


>gi|299144533|ref|ZP_07037612.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517621|gb|EFI41361.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 479

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 104/300 (34%), Gaps = 39/300 (13%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +++   +         TP + V      +    + + K       T+ + +CG G  L +
Sbjct: 1   MKKTNEKKIANKCQIFTPTNYVKELLDSVGYHKNIVNK-------TILENSCGDGNILVE 53

Query: 223 AMNH-------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            +N        +       K        G E++      C+  + +  ++ +  +D+   
Sbjct: 54  IVNRYIEEAIELKFSNKKIKKGLENNIFGFEIDKNQFEKCICNLNLL-VKKNGIQDVEWK 112

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPF---GKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           I     L  +     +F + + NPP+       ++++  ++ +++    G+F        
Sbjct: 113 IYNEDYLKSE--VNIQFDFIVGNPPYITYSNLSQEERTFIKDKYETCRQGKF-------- 162

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE-NDLIEAIV 391
           D    F+ H    L       G+ + ++ SS             + ++++E  D  +   
Sbjct: 163 DYCYAFIEHSIKSLSSE----GKMSYLIPSSIFKTVFGNKLREFMVQYIVEIKDYTK--- 215

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
                +F    + + + I+  +   E+   + + N + L+   +   KK    N+    +
Sbjct: 216 ---EKIFDNALVKSAIIIVDKKDCSEKIKYINMSNDSGLYICKKTIRKKWVFSNEFNIGK 272


>gi|15645293|ref|NP_207463.1| hypothetical protein HP0669 [Helicobacter pylori 26695]
 gi|2313798|gb|AAD07737.1| predicted coding region HP0669 [Helicobacter pylori 26695]
          Length = 933

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 83/314 (26%), Gaps = 48/314 (15%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +N+++ IA   D                 L+    LY+  K    +          ++ 
Sbjct: 127 GDNIKNPIAKALDKMVEKLSTLGLEGETKDLKN---LYESVKT-EALHAKSQKSQQELIK 182

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
           N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 183 NLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFTG 242

Query: 216 TGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TG F+    +  +        K          ++   ++ + +  +       D   +  
Sbjct: 243 TGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDGSLNNF 302

Query: 274 KNIQQGSTLS-----------------------KDLFTGKRFHYCLSNPPF--------- 301
           KNI    +L                        KD    +     + NPP+         
Sbjct: 303 KNIALTDSLDYLEEKTNKGVLPLYEDLKENKGIKDTLANQNIRVIIGNPPYSAGAKSQND 362

Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
                   K +  V +++      R      + +      L+             G    
Sbjct: 363 NNQNLSHPKLEKLVYEKYGKNSTSRSVGKTTRDT------LIQSIRMASDVVKDRGVIGF 416

Query: 359 VLSSSPLFNGRAGS 372
           V++   + +  A  
Sbjct: 417 VVNGGFIDSKSADG 430


>gi|323650444|gb|ADX97298.1| M.ClaI [Caryophanon latum]
          Length = 582

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 102/344 (29%), Gaps = 38/344 (11%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +      T +++ +   + L +     F      +  L DP+CG G  L  A    ++
Sbjct: 6   NKKEDGIHYTAKELSYFMASRLKEASKKFFTAKNSEV-QLLDPSCGDGELLKAAAKIFSE 64

Query: 230 CG--------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                       + I        QE            +  R  E D    L     +  +
Sbjct: 65  DNIKLIGVDTDEYAINAAQQYFTQEDNVSLFINDYLNLFAREEEQDLFNLLPN---EPDS 121

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
              +    K     L+NPP+ +      D  +              L    D   +FL+ 
Sbjct: 122 FFIEDGYLKPVDLILANPPYVRTQVMGADKSQILADK-------FNLKGKIDLYHVFLVA 174

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           +   L+      G   ++ S+  L      +G  +IR +L  N  I  ++ L     F  
Sbjct: 175 MTKHLKD----NGIICVITSNRYLTT----AGGKDIRSFLDANYEILEVIDLGDTKLFDA 226

Query: 402 NIATYLWILSNRKTEER--RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
            +   ++I   +   E     KV       ++        K+     ++   I +I   +
Sbjct: 227 AVLPAIFIGRKKSPSENIKNDKV---KCYRIYEET-----KKTETVIEKCESIYEILSKK 278

Query: 460 ENGKFSRMLDYRTFGYRRIKVLR-PLRMSFILDKTGLARLEADI 502
            +G +             +KV + P  +  +        +E   
Sbjct: 279 TSGIYEANKKNYKVMSGILKVPQDPKELWVMASNEEKEWVEQIK 322


>gi|60681789|ref|YP_211933.1| putative type I restriction modification system-like protein
           [Bacteroides fragilis NCTC 9343]
 gi|60493223|emb|CAH08005.1| putative type I restriction modification system related protein
           [Bacteroides fragilis NCTC 9343]
          Length = 248

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 45/146 (30%), Gaps = 19/146 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRV-MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
               L    + F+ + +  D  P      + ++  +       +     F TP  V  L 
Sbjct: 54  DKTELDLFSQAFAALVMQMDRQPLVDPFGDYFQEFL------SNAQNGQFFTPFGVCELM 107

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L+  P   +  +     R + DP CG+G  L  A           +    L   G ++
Sbjct: 108 NQLITAPK--VSDQPKQGDRRVLDPACGSGRLLLSA----------AQKDRALTFVGIDI 155

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLS 273
                 + +  + +  L  +     +
Sbjct: 156 SYTCCLMTIINLCLNSLNGEVLHMNA 181


>gi|302391314|ref|YP_003827134.1| Eco57I restriction endonuclease [Acetohalobium arabaticum DSM 5501]
 gi|302203391|gb|ADL12069.1| Eco57I restriction endonuclease [Acetohalobium arabaticum DSM 5501]
          Length = 1124

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/501 (11%), Positives = 126/501 (25%), Gaps = 132/501 (26%)

Query: 43  RLECALEPTRSAVRE--------KYLAFGGSNIDLESFVKVAG-YSFYNTSEYS-----L 88
             E  L        +        + L    + I  ++  +    YSF   + +       
Sbjct: 243 YEEDLLLDKAQKFLDRIIFICFCEDLGLLPAEILHKAIDRGTDSYSFSEVTVWQEIKGVF 302

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             + + + ++N+ +Y              F     +  L      + +    S  +   +
Sbjct: 303 RAIDTGSEQHNINAYNGGL----------FKPDEVLDSLVIKNDFFTVIDEISAYDFDSE 352

Query: 149 TVPDRVMSNIYEHLIRRF--------------GSEVSEGAEDFMTPRDVVHLATALLLDP 194
              +  + +++E  I                      +    + TP  +        +  
Sbjct: 353 LDVNI-LGHVFEQSISDIEEIKADIQNDDYDRQESKRKKDGIYYTPEYITKYIVENSVGK 411

Query: 195 DDALFKESPGMIR----------------------------------TLYDPTCGTGGFL 220
                +   G                                      + DP CG+G FL
Sbjct: 412 YLEDIRRELGENELPDIEEADTPQLEGKYKKKHLEFYHEYEERLKEVKVLDPACGSGAFL 471

Query: 221 TDAMNHVADCGS---------------------HHKIPPILVPHGQELEPETHAVCVAGM 259
             A + +                           HK       +G ++   +  +    +
Sbjct: 472 NQAFDFLLKEYQWIYEQIDRLQEGQRSIFGLESLHKDILKNNIYGVDINESSVEITKLSL 531

Query: 260 LIRRLESD-PRRDLSKNIQQGSTL-------------SKDLFT----GKRFHYCLSNPPF 301
            ++    + P  +L  NI+ G++L              +D F        F   + NPP+
Sbjct: 532 WLKTANKNQPLTNLDDNIKCGNSLIDDPEVAGEKAFDWEDEFPEIMDDGGFDVVVGNPPY 591

Query: 302 GK-KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            + +  K      K++     G         +D    F       L+             
Sbjct: 592 VRHEQIKWMKPYLKDNYEVYNG--------TADLYCYFFERGIELLDEDGYFSFIV---- 639

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             S  F       E  +R +LL   + E I     ++F    +   + I+   K    + 
Sbjct: 640 --SNKFTRAKYGKE--LREYLLNYQIEEYIDYTDENVFRDATVDPCVIII---KKSVNQD 692

Query: 421 KVQLINATDLWTSIRNEGKKR 441
              +    +     R+     
Sbjct: 693 DYLINYNKNHVVPRRSLSVNN 713


>gi|167554092|ref|ZP_02347833.1| RemS [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205321627|gb|EDZ09466.1| RemS [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 277

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 21/157 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +A  +  + + F  +    +      +  I+  L              + TP  V  L  
Sbjct: 99  EASDIANMQEMFCLMVSALEAKFHDFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMA 153

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--E 246
            +L+       +     I T+ DP CG  G L      + +      I P +   G   +
Sbjct: 154 RMLMPGVQDTVRRE--GIATVSDPACGAAGMLIAYAECLLE----ADINPSMHMFGSCID 207

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++P    +    + +  +        +  +  G+TL+
Sbjct: 208 IDPVAADMAFIQLSLLGI--------AAEVVTGNTLT 236


>gi|6165642|gb|AAF04626.1| DNA methyltransferase [Geobacillus stearothermophilus]
          Length = 579

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 81/254 (31%), Gaps = 30/254 (11%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  +  +    +L      FK     +  + DP CG G  L           
Sbjct: 14  KATGAHFTPDKLAEVIAKRIL----DYFKGEKNRVIRVLDPACGDGELLLAINKVAQSMN 69

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTL-SKDLFT 288
              +        G + + +   +    +     ++     +D  + + +G      ++  
Sbjct: 70  IQLE------LIGVDFDIDAINIANERLSRSGHKNFRLINKDFLEMVSEGDNYDLFNIEE 123

Query: 289 GKRFHYCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
            +     ++NPP+   +    + A +   K    GR              FL+ +  +L+
Sbjct: 124 LEPVDIIIANPPYVRTQILGAEKAQKLREKFNLKGRVDLYQ--------AFLVAMTQQLK 175

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G   ++ S+  L      S     R++L+ N  I  I+ L    FF   +   +
Sbjct: 176 S----NGIIGVITSNRYLTTKGGES----TRKFLVSNFNILEIMDLGDTKFFEAAVLPAI 227

Query: 408 WILSNRKTEERRGK 421
           +    +  E ++  
Sbjct: 228 FFGEKKNKEYQKEN 241


>gi|262197875|ref|YP_003269084.1| hypothetical protein Hoch_4701 [Haliangium ochraceum DSM 14365]
 gi|262081222|gb|ACY17191.1| hypothetical protein Hoch_4701 [Haliangium ochraceum DSM 14365]
          Length = 795

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 58/223 (26%), Gaps = 52/223 (23%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-RRFGSEVS------------EGAED 176
           A  LY               +P   +  +YEH + R+     +              +  
Sbjct: 112 ADRLYA-----PTHARRLAAMPPEDLGRLYEHALDRKLSLSGNGRLALETSPATHRSSGM 166

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           + TP DVV       + P  A           + DP CG+G FL     ++     +  +
Sbjct: 167 YYTPPDVVDALIHSSVAPLFAGQPLKQAAKVKILDPACGSGSFLVGVYRYLLGWYRNAYL 226

Query: 237 PP----------------------------ILVPHGQELEPETHAVCVAGMLIRRLESDP 268
                                             HG +L+P   A+    + +  LE D 
Sbjct: 227 RAGGDALKAHLTRSGVGTWTLVAPERIRILTQHLHGVDLDPHAVALARRALYLEALEGDS 286

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
                             +     + C  N   G +  +D   
Sbjct: 287 VEAQEGR------FENPTWPALDHNLCCGNTLVGPEVPEDPTP 323


>gi|254500027|ref|ZP_05112180.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
 gi|222441494|gb|EEE48171.1| N-6 DNA Methylase family [Labrenzia alexandrii DFL-11]
          Length = 1702

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 67/260 (25%), Gaps = 58/260 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  +V               +        + +P  GTG F     
Sbjct: 160 DYASLARCTQYAHFTPEFIVRAMWK--------GLERLGWRGGRVLEPGIGTGLFPALMP 211

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               +              G EL+P T  +                     I +G     
Sbjct: 212 EAFRE---------TSFVTGVELDPVTSRIAR------------LLQPVSRIVEGDFART 250

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL     F   + NPPF  +  +   A                          F+    +
Sbjct: 251 DL--PAHFDLVIGNPPFSDRTVRSDRAYRSMGLRLHDY---------------FIARSID 293

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L+     G  AA V SS  +    A       R  +  +  + A + LP   F     T
Sbjct: 294 LLKP----GALAAFVTSSGTMDKADAT-----AREHIARSADLIAAIRLPEGSFRQDAGT 344

Query: 402 NIATYLWILSNRKTEERRGK 421
           ++   +     RK  E  G+
Sbjct: 345 DVVVDILFFRKRKPGEPEGE 364


>gi|127418|sp|P22772|MTB3_BACAR RecName: Full=Modification methylase BanIII; Short=M.BanIII;
           AltName: Full=Adenine-specific methyltransferase BanIII
          Length = 580

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 88/261 (33%), Gaps = 30/261 (11%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            I E LI++      +      TP D+  +    L++            IR L DP+CG 
Sbjct: 4   TIEEMLIKQ------KETGAHYTPTDLGDIIAKRLINELKKSGISGTKKIRGL-DPSCGD 56

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESDPRRDLS 273
           G  L             +     +    + ++     +         +   +     DL 
Sbjct: 57  GELLLSLNRIAKFNNIDNIELIGIDEDKEAIKEADFRLNEMGINDAKLTAGDFLDMVDLE 116

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKIS 332
            N+        DL   +     ++NPP+ +      D  +K  K     GR         
Sbjct: 117 GNLSLFD---DDLSKIEPVDLIIANPPYVRTQVLGADRAQKLAKLFNLKGRVDLYH---- 169

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+ +  +L+     GG   ++ S+  L N    SGES IR++L EN  I  I+ 
Sbjct: 170 ----AFLVAMTLQLKP----GGLIGVITSNKYLANS---SGES-IRQFLAENYDIIEIMD 217

Query: 393 LPTDLFFRTNIATYLWILSNR 413
           L     F   +   ++    +
Sbjct: 218 LGDTKLFSAAVLQAIFFGRKK 238


>gi|331746792|ref|YP_004422829.1| hypothetical protein TERMP_02214 [Thermococcus barophilus MP]
 gi|315185003|gb|ADT85187.1| hypothetical protein TERMP_02214 [Thermococcus barophilus MP]
          Length = 1199

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/330 (10%), Positives = 89/330 (26%), Gaps = 65/330 (19%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ LE         ++  +  +  S++ +  +       F+     +          
Sbjct: 300 LIFVKFLEDKGLVPGGLLKRTFEEWRNSSVPVSYYKAYLEPLFFGVFN-TPEEERDRKVI 358

Query: 98  NNLES--YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD- 152
            +     Y+    F +N +        +     +    ++ +I K     +    +  + 
Sbjct: 359 EHFRDIPYLNGGLFRENLR--------NEKQYDIPDDNVMEEIIKFLERYDFTLGSKSNE 410

Query: 153 -----RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA------------------ 189
                 ++ ++YE LI    ++  +G   + TP +V                        
Sbjct: 411 ESLDPDILGHVYEKLINLLTNKGQKGLGAYYTPEEVTRTIVKSTVEPVVIKKLKEVLKKW 470

Query: 190 ------LLLDPDDALFKESPGMI---------------RTLYDPTCGTGGFLTDAMNHVA 228
                 L     D +  E   +                  + DP  G+G FL   +  + 
Sbjct: 471 GWQEQLLNFSTLDEVLNEDRPITRDGRVLKDFLDEINKMKILDPAVGSGHFLISVLKELL 530

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +         +    G+E       + +    +  ++ D        ++    L +DL  
Sbjct: 531 EI-----KKRVHSLIGEEFNTYKLKLEIILNNLYGVDIDETAVEVAKLRLWLALIEDLDV 585

Query: 289 G--KRFHYCLSNPPFGKKWEKDKDAVEKEH 316
              +R    L N  +  +          E 
Sbjct: 586 DAVRRGDVILPNIEYNVRVGNSLVGWIGER 615



 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 21/184 (11%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPP+G      +  +       E   +        D  + F+      L+    
Sbjct: 749 FDIIIGNPPYGNILSNIEKDIIDTRYREEEATYSV------DSFLAFMRRSQELLKD--- 799

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GG    ++ +S       G   ++ R+  L+   ++  + LP D+F    +   + +L 
Sbjct: 800 -GGYLGFIIPASF----GTGVNYTKARKHFLQTMELKVFLYLPFDVFEGAYVDNSIIVL- 853

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
             +      +V +      +       +   +  + +  +I   Y    N    R+    
Sbjct: 854 KNEEPSMDNEVLIYA----FPKRSRLEELLTVWENPKIEKI--RYSLLLNDPLCRIFPGG 907

Query: 472 TFGY 475
              Y
Sbjct: 908 NVIY 911


>gi|836624|emb|CAA58443.1| methyltransferase [Aneurinibacillus aneurinilyticus]
          Length = 505

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 86/250 (34%), Gaps = 31/250 (12%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            I E LI++      +      TP D+  +    L++            IR L DP+CG 
Sbjct: 4   TIEEMLIKQ------KETGAHYTPTDLGDIIAKRLINELKKSGISGTKKIRGL-DPSCGD 56

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA---GMLIRRLESDPRRDLS 273
           G  L             +     +    + ++     +         +   +     DL 
Sbjct: 57  GELLLSLNRMGKFNNIDNIELIGIDEDKEAIKEADFRLNEMGINDAKLSGGDFLDMVDLE 116

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRFGPGLPKIS 332
            N+        DL   +     ++NPP+ +      D  +K  K     GR         
Sbjct: 117 GNLSLFD---DDLSKIEPVDLIIANPPYVRTQVLGADRAQKLAKLFNLKGRVDLYH---- 169

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                FL+ +  +L+     GG   ++ S+  L N    +GES IR++L EN  I  I+ 
Sbjct: 170 ----AFLVAMTLQLKP----GGLIGVITSNKYLAN---TTGES-IRQFLAENYDIIEIMD 217

Query: 393 LP-TDLFFRT 401
           L  T LF   
Sbjct: 218 LGDTKLFSGA 227


>gi|330507139|ref|YP_004383567.1| type IIS restriction enzyme Eco57I (endonuclease Eco57I)
           [Methanosaeta concilii GP-6]
 gi|328927947|gb|AEB67749.1| type IIS restriction enzyme Eco57I (Endonuclease Eco57I)
           [Methanosaeta concilii GP-6]
          Length = 906

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 14/190 (7%)

Query: 71  SFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSS---TIARL 127
              + A    YN+  +           + L   +       K I     +       + L
Sbjct: 267 ELFRRADER-YNSGIFHFEKESGRENPDTLSLRLNIDDKPLKDIIRRLYYPDSPYEFSVL 325

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
             A +L ++ + F G  +        V+ +           EV +      TP  +V   
Sbjct: 326 P-AEILGQVYEQFLGKVIRLTDGHRAVVED---------KPEVKKAGGVKYTPAYIVDYI 375

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
               L P       S     ++ DP CG+G FL  A  H+ D      +  ++      L
Sbjct: 376 VKNTLWPTLEEKTPSDATKISVLDPACGSGSFLIVAYQHLLDWHREWYVQNLVPLLESGL 435

Query: 248 EPETHAVCVA 257
            P +  +   
Sbjct: 436 RPSSIQIRHM 445


>gi|58337054|ref|YP_193639.1| modification methylase [Lactobacillus acidophilus NCFM]
 gi|227903618|ref|ZP_04021423.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus acidophilus ATCC 4796]
 gi|58254371|gb|AAV42608.1| putative modification methylase [Lactobacillus acidophilus NCFM]
 gi|227868505|gb|EEJ75926.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus acidophilus ATCC 4796]
          Length = 333

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 91/299 (30%), Gaps = 40/299 (13%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D++  +  + ++  L  +  ++         TP  +  +   L+        K       
Sbjct: 67  DSISQKEKAQVFTFLTLKAINDDGREVNQMPTPPAISTVVAMLM-------HKLLSNKKM 119

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + DPT GTG  L   ++ +                G + + E   +    +     + D
Sbjct: 120 EIVDPTVGTGILLFSVISQLKALNHS---KDQYKLVGIDNDEEMLNLA--DVAAHLNDID 174

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   +     L    +        +S+ P G            E+      R   G
Sbjct: 175 IE------LYCQDALMP--WMCPNADAIVSDLPVGY-------YPIDENAKNFENRAEKG 219

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S   +L +  +   L+     GG + +V+  S L    +G   ++   WL +   +
Sbjct: 220 H---SFAHLLLIEQIIKNLKP----GGYSFLVVPKSIL----SGKIGADFMPWLTKKVYL 268

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444
           +AIV LP D+F        + +  N   + +  +V L     L           K    
Sbjct: 269 KAIVELPDDMFKNKFNQKSVLVFQNHGGDAKASEVLLTKLESLKKQESLIRFNVKLNEW 327


>gi|294792246|ref|ZP_06757394.1| methylase [Veillonella sp. 6_1_27]
 gi|294457476|gb|EFG25838.1| methylase [Veillonella sp. 6_1_27]
          Length = 954

 Score = 53.4 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 72/268 (26%), Gaps = 64/268 (23%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L  +  + +        +   +   ++E  +     E         T  + +H     
Sbjct: 302 DELRVLILDSASASFDWSQISPTIFGAVFESTL---NPETRREGGMHYTSIENIHKVIDP 358

Query: 191 LLDPD-------------------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           L   D                    AL  +      T  DP CG+G FLT+    + +  
Sbjct: 359 LFLDDLRLELNEINLIKQPAAQKRKALIFQEKLASLTFLDPACGSGNFLTETYISLRNLE 418

Query: 232 SH------------------HKIPPILVPHGQELEPETHAVCVAGM-------------L 260
           +                        I    G EL     +V    +             +
Sbjct: 419 NEAISLIYGKQSMLSVMTDSIIKVSIQQMFGIELNDFAVSVAKTALWIAESQLMEKTKEI 478

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           I   ++        NI +G  L  D     + K   Y + NPPF  + ++ ++  +   +
Sbjct: 479 IYSNDTYLPLKAYNNIVEGDALKLDWNTIISNKDLKYIIGNPPFRGRSKQSQEQ-KNSSE 537

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F  G        + F+     K
Sbjct: 538 YVFGANFKYG-------QLDFVASWFVK 558


>gi|163868266|ref|YP_001609475.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017922|emb|CAK01480.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1653

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 64/239 (26%), Gaps = 21/239 (8%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             + S     I  + D ++   + +     YK    F    +        ++  +YE    
Sbjct: 816  NAISQAMDKILTELDKTNIEEKTKDLDKFYKSVT-FCTAGITETHAKQNLIIKLYESFFA 874

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP  VV      + D     F +S G    ++ DP  GTG F+T  
Sbjct: 875  KAFKKTTDKLGIVYTPVKVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 934

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282
            +          +       H  E+    + +    +               K+I    T 
Sbjct: 935  LQSNLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIETTYHSLMKGEYIPFKHIGLTDTF 994

Query: 283  SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                                +            NPP+    + + D  +         R
Sbjct: 995  RMLEEKNLLQELFKENSEYLEYQKKLDIKVIFGNPPYSVGQKNENDNAKNTPYPILDNR 1053


>gi|163867704|ref|YP_001608905.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017352|emb|CAK00910.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1451

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 87/320 (27%), Gaps = 44/320 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGT 216
           +Y    R       E      TP +VV      + D     F +S G    ++ DP  GT
Sbjct: 667 LYNEFFRYAFPRTVEKLGIVYTPIEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGT 726

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR------- 263
           G F+T  +          +       H  E+    + +    +      L++        
Sbjct: 727 GTFITRLLQSDLIKPEDMEYKYRYDIHANEIVLLAYYIAAINIEATYHGLMKGNYIPFKH 786

Query: 264 ------LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                      ++DL + I + ++   +            NPP+    +   D  +    
Sbjct: 787 IGLTDTFRMIEKQDLMEGILKENSEYLEHQKKLDIKVIFGNPPYSTGQKSANDNAKNTPY 846

Query: 318 NGELGRFGPGLPKIS---DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                R        S   +   L+  ++             G    V ++  +       
Sbjct: 847 PILDNRISETYAAQSESINMQALYDSYIRAIRWASDRIKDCGIIGFVTNAGFINACSLNG 906

Query: 373 GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417
               +R+ L+E      I  L  +              +F   +     + IL      +
Sbjct: 907 ----LRKCLVEEFSSLYIFHLRGNQRTSGELSRKEGGKIFGSGSRAPIAISILVKNPNAQ 962

Query: 418 RRGKVQLINATDLWTSIRNE 437
           + GK+   +  D        
Sbjct: 963 QHGKIYFRDIGDYLNREEKL 982


>gi|330822331|ref|YP_004362552.1| hypothetical protein bgla_1p1280 [Burkholderia gladioli BSR3]
 gi|327374168|gb|AEA65522.1| hypothetical protein bgla_1p1280 [Burkholderia gladioli BSR3]
          Length = 293

 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 47/156 (30%), Gaps = 20/156 (12%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           + +L  +   F  +    +     V+ ++Y  L        S  A  F TP  V  +   
Sbjct: 101 SEMLANLMLAFLDLSKMGEFAD--VLGSLYMRL-----ELGSSRAGQFFTPYHVSRMMGQ 153

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +                 T+ DP CG GG +    +     G  H+          ++  
Sbjct: 154 I---QVGDGTDIRAREFVTVSDPACGAGGMIIAFADAARSVGLDHRACMHATCIDIDIRC 210

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
              A     +L          D+   +  G+ L+ D
Sbjct: 211 VHMAYVQLSLL----------DIPAVVIHGNALASD 236


>gi|328953087|ref|YP_004370421.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
 gi|328453411|gb|AEB09240.1| N-6 DNA methylase [Desulfobacca acetoxidans DSM 11109]
          Length = 1231

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 32/203 (15%)

Query: 92  GSTNT--RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL-----------YKICK 138
              +    + L  ++      AK + +D++       +     L             +  
Sbjct: 262 IPDHISQGDTLRLHLEKHFAEAKDVTKDYETVFGEEHISIGNRLPFYSDAAVPHWRSLIN 321

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
                +     +   V+ +++E LI     E       F T  +VV L  +  +   D  
Sbjct: 322 EIHDFDF--SLLDYDVIGSVFERLI---APEERHKFGQFYTRPEVVDLINSFCIRRGDE- 375

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI-PPILVPHGQELEPETHAVCVA 257
                     + DP CG G FL  A     +     K    +    G ++      +   
Sbjct: 376 ---------KVMDPACGGGTFLVRAYVRKRELAPARKHGQLLDDLFGVDISHFATHLSTI 426

Query: 258 GMLIRRLESDPRRDLSKNIQQGS 280
            +  R L      D    I +  
Sbjct: 427 NLATRDL---IDADNYPQIARSD 446


>gi|223986310|ref|ZP_03636321.1| hypothetical protein HOLDEFILI_03631 [Holdemania filiformis DSM
           12042]
 gi|223961718|gb|EEF66219.1| hypothetical protein HOLDEFILI_03631 [Holdemania filiformis DSM
           12042]
          Length = 105

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR-----LEKAGLLYKICKNF-S 141
           ++   + N    +  YI    +  +   E+      + +          +L  +   F +
Sbjct: 1   MAKETNANIGFEIGKYIDEAMEAIEK--ENTTLKGVLPKNYGTPDLDKTVLGDVVDLFTN 58

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            I +        ++   YE+ I  F ++  +    F TP  +V L 
Sbjct: 59  KIHMDGTDHDMDLLGRTYEYCIAEFAAKEGKDGGGFYTPSSIVKLL 104


>gi|325956045|ref|YP_004286655.1| putative type II restriction endonuclease [Lactobacillus
           acidophilus 30SC]
 gi|325332610|gb|ADZ06518.1| putative type II restriction endonuclease [Lactobacillus
           acidophilus 30SC]
          Length = 926

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 83/323 (25%), Gaps = 91/323 (28%)

Query: 39  TLLRR--LECALEPT-----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL 91
              +R      LE       R A+ + +        D + +                  L
Sbjct: 217 IFGKRNMFHDYLEQFDVRQMRQALIKLFKVLDTKEEDRDPY------------------L 258

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
              + +     Y+     + + I E   F+  +  L    LL K    F   E+ P    
Sbjct: 259 ADDDPKLAEFPYVNGGMFSNEDI-EIPSFTDELRSL----LLSKASDEFDWSEISPT--- 310

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---- 207
             +   ++E  +     E         T  + +H     L   D           +    
Sbjct: 311 --IFGAVFESTL---NPETRRQGGMHYTSVENIHKVIDPLFLNDLKNELNEIKKTKQLAT 365

Query: 208 ---------------TLYDPTCGTGGFLTDAMNHVADC------------------GSHH 234
                          T +DP CG+G FLT+    +                         
Sbjct: 366 LKKKARKFQEKLANLTFFDPACGSGNFLTETYLQLRKLENEAIKLIYPNPSLDVGQAKDI 425

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGST 281
               I   +G E+     +V    + I   +                      +I +G+ 
Sbjct: 426 IKVSIQQFYGIEINDFAVSVAKTALWIAESQMLEETKDIFYADWDFLPLKTYTHIHEGNA 485

Query: 282 LSKDLF---TGKRFHYCLSNPPF 301
           L+ D          HY + NPPF
Sbjct: 486 LTMDWNNVIPNYACHYIMGNPPF 508


>gi|163868188|ref|YP_001609396.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017843|emb|CAK01401.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1652

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 21/230 (9%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             + S     I  + D ++   + +     YK    F    +        ++  +YE    
Sbjct: 816  NAISQAMDKILTELDKTNIEEKTKDLDKFYKSVT-FCTAGITETHAKQNLIIKLYESFFA 874

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP  VV      + D     F +S G    ++ DP  GTG F+T  
Sbjct: 875  KAFKKTTDKLGIVYTPVKVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 934

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282
            +          +       H  E+    + +    +               K+I    T 
Sbjct: 935  LQSDLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIESTYHSLMKGEYIPFKHIGLTDTF 994

Query: 283  SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                                +L           NPP+    + + D  + 
Sbjct: 995  RMLEEKNLLQELFKENSEYLELQKNLNIKVIFGNPPYSVGQKNENDNAKN 1044


>gi|296135119|ref|YP_003642361.1| superfamily II DNA/RNA helicase [Thiomonas intermedia K12]
 gi|295795241|gb|ADG30031.1| superfamily II DNA/RNA helicase [Thiomonas intermedia K12]
          Length = 1041

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 65/237 (27%), Gaps = 31/237 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGT 216
           IYE+  + + ++ ++      TP ++V           +  F  +       + DP  GT
Sbjct: 286 IYENFYKVYNTKAADRLGVVYTPGEIVRFMIDGADWLCEQHFGRNLIDQGVDILDPATGT 345

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G F+ + + H     +  K       H  E+    + V    +               ++
Sbjct: 346 GTFICELLEHFRGQPAKLKHKYQHELHANEVAILPYYVANLNIEATYAAISGEYAEFPSL 405

Query: 277 QQGSTLSK------------DLF--------------TGKRFHYCLSNPPFGKKWEKDKD 310
               TL              DLF                +R    + N P+    + + D
Sbjct: 406 CFVDTLDNVGLHTAAKGATADLFGSVSEENVARIKRQNARRISVIIGNTPYNANQQSEND 465

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSSS 363
             +         R        S      L  +  +         N  G  A V + S
Sbjct: 466 NNKNREYPAIDARIKQTYIAQSTAQKTKLYDMYARFFRWASDRLNENGVLAFVTNRS 522


>gi|146318616|ref|YP_001198328.1| SNF2 family protein [Streptococcus suis 05ZYH33]
 gi|145689422|gb|ABP89928.1| SNF2 family protein [Streptococcus suis 05ZYH33]
          Length = 2274

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 107/394 (27%), Gaps = 72/394 (18%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
                 E+          +E+  ++    FY      ++       R+ +E+ IA+    
Sbjct: 559 HNDTELEESDNQIPEEEVVETIPEIPVTDFYFPE--DMTDFYPKTARDKVETNIAAI--- 613

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RR 165
              + ++ +     A L +  LL K    + G+        +   S   E L      + 
Sbjct: 614 --RLVKNLEVEHRNASLSEQELLAKYVG-WGGLANDFFDDYNPKFSMEREELKSLVTDKE 670

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +          + T   ++H              +        + DP+ GTG F      
Sbjct: 671 YSDMKQSSLTAYYTDPALIHQMW--------DKLERDGFTGGKILDPSMGTGNFFAAMPK 722

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H+ +             +G EL+  T A+                +    I+   T+   
Sbjct: 723 HLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV--- 760

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            F    F   +SN PF              +      R+        D   +   +   K
Sbjct: 761 AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFVKK 799

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTN 402
                + GG+ AI+        G        I + + E       V LP   F     TN
Sbjct: 800 SLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSTFKAIAGTN 854

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           + T +        +         + +  +     
Sbjct: 855 VTTDMLFFQKHLNKGYVTDDLAFSGSIRYEKDSR 888


>gi|332885095|gb|EGK05347.1| hypothetical protein HMPREF9456_02846 [Dysgonomonas mossii DSM
           22836]
          Length = 1937

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/395 (14%), Positives = 108/395 (27%), Gaps = 85/395 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R   S  +     F TP+ V+   T             S    +   +P+ GTG F++  
Sbjct: 92  RSVSSLKNSVLTAFYTPKPVIDALT--------LALNNSGIKPQRFLEPSAGTGAFISSF 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V D                             +L  ++ S    +    I+    + 
Sbjct: 144 KETVPDAEVTGFEK--------------------DLLTGKILSHLHPEDKIRIEGYEKM- 182

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +    + +    SN PFG     D    + E            +P +S  +     +  
Sbjct: 183 -EGRYSQHYDVIASNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFF 229

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
            K  +    GG  A + S   L + +       IR  L+ +  + + + LP +LF     
Sbjct: 230 TKSVMAAREGGLIAFITSQGVLNSEQN----KPIREHLMNSCNVVSAIRLPNNLFTEEAG 285

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---RRIINDDQR-------- 449
           T + + L IL  +        +        +   R          +  D  R        
Sbjct: 286 TEVGSDLIILQRK-----NDNILPTQRQQDFIESRKLSNGISVNNLFKDFDRVIQTDVKV 340

Query: 450 ------------------RQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD 491
                               I        N  F++ LD + +       +  L++     
Sbjct: 341 GTDPYGKPAMEFTHSGGAEAIAATLYRMLNEDFTQHLDVQHYQSHAQSTVEQLQLQVAPT 400

Query: 492 KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQI 526
                    ++   +L      FW ++   + Q  
Sbjct: 401 AEIRQT--PNLDETRLPDDLSPFWQEVEDFLTQST 433


>gi|291521729|emb|CBK80022.1| N-6 DNA Methylase [Coprococcus catus GD/7]
          Length = 932

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 96/317 (30%), Gaps = 79/317 (24%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           Y+    F+D    I     F+  I  L    LL K  ++F   ++ P      +   ++E
Sbjct: 281 YVNGGLFADETIEIPP---FTEEIKEL----LLTKASEDFDWSDISPT-----IFGAVFE 328

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----------------DALFKESP 203
             +     E         T  + +H   + L   D                 D   +E  
Sbjct: 329 STL---NPETRRSGGMHYTSIENIHKVISPLFLEDLQKEFDSVRAIQVKRTRDKKLEEFQ 385

Query: 204 GMIR--TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244
             +   T +DP CG+G FLT+    +    +      +                    +G
Sbjct: 386 NKLASLTFFDPACGSGNFLTETYLSLRRLENEVIREKVGGQMTLVEVNNPIRVSIQQFYG 445

Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTL---SKDLF 287
            E+      V    + I                  D     +  NI +G+ L     D+ 
Sbjct: 446 IEINDFAVTVAKTALWIAESQMLEETKNIVYGFNDDFLPLKTYVNITEGNALRIDWNDVI 505

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             ++  + + NPPF        +  E   K  E           S G++ ++     K  
Sbjct: 506 PAEKLSFIMGNPPFVGARWMASEQKEDVEKIFEGW--------KSIGNLDYVSCWYKKAA 557

Query: 348 LP-PNGGGRAAIVLSSS 363
               N   RAA+V ++S
Sbjct: 558 DYMGNYNIRAALVSTNS 574


>gi|253751738|ref|YP_003024879.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
 gi|251816027|emb|CAZ51647.1| hypothetical protein SSUSC84_0870 [Streptococcus suis SC84]
          Length = 2274

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/394 (14%), Positives = 107/394 (27%), Gaps = 72/394 (18%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
                 E+          +E+  ++    FY      ++       R+ +E+ IA+    
Sbjct: 559 HNDTELEESDNQIPEEEVVETIPEIPVTDFYFPE--DMTDFYPKTARDKVETNIAAI--- 613

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RR 165
              + ++ +     A L +  LL K    + G+        +   S   E L      + 
Sbjct: 614 --RLVKNLEVEHRNASLSEQELLAKYVG-WGGLANDFFDDYNPKFSMEREELKSLVTDKE 670

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +          + T   ++H              +        + DP+ GTG F      
Sbjct: 671 YSDMKQSSLTAYYTDPALIHQMW--------DKLERDGFTGGKILDPSMGTGNFFAAMPK 722

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H+ +             +G EL+  T A+                +    I+   T+   
Sbjct: 723 HLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV--- 760

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            F    F   +SN PF              +      R+        D   +   +   K
Sbjct: 761 AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFVKK 799

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTN 402
                + GG+ AI+        G        I + + E       V LP   F     TN
Sbjct: 800 SLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSTFKAIAGTN 854

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           + T +        +         + +  +     
Sbjct: 855 VTTDMLFFQKHLNKGYVTDDLAFSGSIRYEKDSR 888


>gi|240080252|ref|ZP_04724795.1| hypothetical protein NgonF_02937 [Neisseria gonorrhoeae FA19]
 gi|240120741|ref|ZP_04733703.1| hypothetical protein NgonPI_02993 [Neisseria gonorrhoeae PID24-1]
 gi|254493268|ref|ZP_05106439.1| restriction enzyme alpha subunit [Neisseria gonorrhoeae 1291]
 gi|226512308|gb|EEH61653.1| restriction enzyme alpha subunit [Neisseria gonorrhoeae 1291]
          Length = 249

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
            SD  +  L  +   L++   GG   AI+  S  +   +A S        +++   ++A+
Sbjct: 33  KSDAELHELYFVKEMLDMLAEGGTGIAIIPVSCVIAPSKAKS-------EIVKYHRLKAV 85

Query: 391 VALPTDLFFRTNIATYLWILSNRKTE 416
           +++P++LF+     T + +    K  
Sbjct: 86  MSMPSELFYPVGTVTCIVVFEAHKPH 111


>gi|58336670|ref|YP_193255.1| methylase [Lactobacillus acidophilus NCFM]
 gi|58253987|gb|AAV42224.1| methylase [Lactobacillus acidophilus NCFM]
          Length = 939

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 77/281 (27%), Gaps = 74/281 (26%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           Y+    FSD    I     F+  +  L    LL K    F   E+ P      +   ++E
Sbjct: 274 YVNGGMFSDENIEIPP---FTDELRDL----LLSKASDEFDWSEISPT-----IFGAVFE 321

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIR------------ 207
             +     +         T  + +H     L  D       E   + +            
Sbjct: 322 STL---NPDTRRQGGMHYTSIENIHKVIDPLFLDELKDELNELKKVKQPAKLKKKASAFQ 378

Query: 208 ------TLYDPTCGTGGFLTDAMNHVADC------------------GSHHKIPPILVPH 243
                 T +DP CG+G FLT+    +                             I   +
Sbjct: 379 DKLANLTFFDPACGSGNFLTETYLQLRRLENDAIKLIYPNPSLDVGQAQDIIKVSIQQFY 438

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF--- 287
           G E+     +V    + I   +                      NI +G+ L  D     
Sbjct: 439 GIEINDFAVSVAKTALWIAESQMLEETKDIFYADWDFLPLKTYTNIHEGNALRMDWNEVI 498

Query: 288 TGKRFHYCLSNPPF----GKKWEKDKDAVEKEHKNGELGRF 324
                HY + NPPF    G+   K+  + +         RF
Sbjct: 499 PSYACHYIMGNPPFVSNTGRVSNKESHSKKMLTSEQSDERF 539


>gi|189913148|ref|YP_001965036.1| Helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|189913483|ref|YP_001964711.1| Putative protein with DEAD/DEAH box helicase and with type III
            restriction enzyme motif [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Paris)']
 gi|167777824|gb|ABZ96123.1| Helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781551|gb|ABZ99847.1| Putative protein with DEAD/DEAH box helicase and with type III
            restriction enzyme motif [Leptospira biflexa serovar
            Patoc strain 'Patoc 1 (Paris)']
          Length = 1647

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/432 (15%), Positives = 123/432 (28%), Gaps = 52/432 (12%)

Query: 48   LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
            +E       E       S  D E    +A +     ++     L   N     ++ ++  
Sbjct: 770  IEAFHDFAEELRDDLNDSITDEEVVEMLAQHL---ITKPVFDALFQ-NEEFTKQNAVSKA 825

Query: 108  SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
             DN   I ++         L+     Y+  K  +    + +     ++  +Y+       
Sbjct: 826  MDNILGILQEHHLEKERDTLQ---RFYESVKMRASGITNAEGRQKIIL-ELYDKFFSNAF 881

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-IRTLYDPTCGTGGFLTDAMNH 226
             ++SE      TP + V      + D   + F    G     + DP  GTG FLT  M  
Sbjct: 882  PKLSERLGIVYTPVEAVDFILHSVADVLQSEFGLQFGDDSVQVLDPFTGTGTFLTRLMQS 941

Query: 227  VADCGSHHKIPPILVPHGQELEPETHAVCVAG------------------MLIRR-LESD 267
                            H  E+    + +                      ML+    +  
Sbjct: 942  GLLTKEELIRKYKNGLHANEIVLLAYYIASINIESTYHTVTGEPYTPFGGMLLTDTFQLF 1001

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             + D+  +    ++  +     +     + NPP+        D  +     G   R    
Sbjct: 1002 EKDDMISHFLPDNSERRMKQKSQNVQVIVCNPPYSAGQTSANDNNQNVKYPGLDSRIEAT 1061

Query: 328  LPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
              K S  S+   L+  ++             G    + ++S +    A  G   +R+ L 
Sbjct: 1062 YAKHSKASLQKNLYDSYIRAIRWASDRIGDSGVMGFITNASFI-EANAMDG---LRKCLQ 1117

Query: 383  ENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINA 427
            E      I  L  +              LF   +     + I       +  GK+ L + 
Sbjct: 1118 EEFSTLYIFHLRGNQRTSGELSRKEGGKLFGSGSRAPIAITIFVKNPKAKESGKIFLHDI 1177

Query: 428  TDLWTSIRNEGK 439
             D  T  +   K
Sbjct: 1178 GDYLTREQKLEK 1189


>gi|159029065|emb|CAO90051.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 575

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 76/248 (30%), Gaps = 51/248 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI------- 206
             NI+E       +E         T   D++ +    +    +   +++  +        
Sbjct: 293 FGNIFE---GTANAEERHTYGMHFTSEADIMKIVRPTISRYWEEKIEQAGTIGELNTLQL 349

Query: 207 ----RTLYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPILVPHGQ 245
                 + DP CG+G FL  A   +                                +G 
Sbjct: 350 ELQQYKVLDPACGSGNFLYVAYQELKRIEQLLIEKIAERRRSANDQLQISFVTPKQFYGM 409

Query: 246 ELEPETHAVCVAGMLI----------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           ++ P    +    ++I              S P   L  NI     L  D    ++    
Sbjct: 410 DINPFAVELARVTLMIARKVAIDKFNLTEASLPLDTLDSNIICADALFTDW---QKADAI 466

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPPF    ++ +  +  ++ N   GRF      + D S+ F  +         N  GR
Sbjct: 467 IGNPPF-LGGKQMRLNLSDDYVNKVFGRFSE----VKD-SVDFCSYWFRLAHNQLNEKGR 520

Query: 356 AAIVLSSS 363
           A +V ++S
Sbjct: 521 AGLVGTNS 528


>gi|153811865|ref|ZP_01964533.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
 gi|149831999|gb|EDM87084.1| hypothetical protein RUMOBE_02258 [Ruminococcus obeum ATCC 29174]
          Length = 2592

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 105/401 (26%), Gaps = 92/401 (22%)

Query: 49   EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
            EP      +     G  +I  E  V+   ++F+ T +  L + G              F 
Sbjct: 936  EPEAEPEIKTEEETGPEDIK-EQIVEQEPHNFHITDD-DLGSGGPKA----------KFK 983

Query: 109  DNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVP--DRVMSNIYEH 161
             N +AI         +  LE+   L      ++   + G    P      +      Y  
Sbjct: 984  ANMEAI-------RLLKELEQDQRLATPEEQEVLSRYVGWGGIPQAFEERNSAWEEEYTQ 1036

Query: 162  LIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            L        + +  +     F T   V+                        + +P+CG 
Sbjct: 1037 LKGILTPEEYSAARASTLNAFYTSPTVIKAMYE--------ALGNMGLKQGNILEPSCGV 1088

Query: 217  GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            G F+      ++              +G EL+P +  +               +   KN 
Sbjct: 1089 GNFMGLLPESMSAAN----------MYGVELDPVSGQIAK-------------QLYQKNR 1125

Query: 277  QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                   +  +    F   + N PFG     D+          +                
Sbjct: 1126 IAVQGFEETSYPDSFFDCVIGNVPFGAYQVSDRKYDRYHFMIHDY--------------- 1170

Query: 337  LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
                    K       GG  A+V SS  +          E+R++      +   + LP +
Sbjct: 1171 -----FIAKSLDLVRPGGVVAVVTSSGTMDKQNP-----EVRQYFANRADLLGAIRLPNN 1220

Query: 397  LF---FRTNIATYLWILSNRKTEERR--GKVQLINATDLWT 432
             F      ++   +     R          VQL    + + 
Sbjct: 1221 AFQRNANASVVADILFFQKRNRAAITEPDWVQLKTTPEGYM 1261


>gi|227552639|ref|ZP_03982688.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecium TX1330]
 gi|293378669|ref|ZP_06624828.1| N-6 DNA Methylase [Enterococcus faecium PC4.1]
 gi|227178265|gb|EEI59237.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecium TX1330]
 gi|292642709|gb|EFF60860.1| N-6 DNA Methylase [Enterococcus faecium PC4.1]
          Length = 335

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 108/341 (31%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E    +  + +    +   P+         + 
Sbjct: 27  SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 82  QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 136

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 137 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 179

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278

Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435
           +LF        + IL  +    ++  +V L+    L    +
Sbjct: 279 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 319


>gi|329965381|ref|ZP_08302305.1| hypothetical protein HMPREF9446_03922 [Bacteroides fluxus YIT
           12057]
 gi|328522173|gb|EGF49287.1| hypothetical protein HMPREF9446_03922 [Bacteroides fluxus YIT
           12057]
          Length = 250

 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 66/250 (26%), Gaps = 71/250 (28%)

Query: 115 FEDFDFSSTIARLEK-----------------AGLLYKICKNFSG-----IELHPDTVPD 152
              F+ S+ +  L++                   LL  I   FS       +       +
Sbjct: 1   MAKFELSNEVKPLDRIISRLAGECGYEVQQVFNDLLRYIIHGFSPGAPPLKDWKYKRQQN 60

Query: 153 ---RVMSNIYEHLIRR----------FGS--------EVSEGAEDFMTPRDVVHLATALL 191
                M+  +  +++R          FG            +    F TP  +  L     
Sbjct: 61  MAFLEMTREWVGIMQRQTALSGWFDAFGELHMAYCSKSGQQYLGQFFTPASICELMVQCT 120

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                          + + DPTCG+G  L     H           P     G+++    
Sbjct: 121 RTEKGTT-------GKRISDPTCGSGRLLLAYHVH----------FPGNYLVGEDISRTC 163

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR---FHYCLSNPPFGKKWEKD 308
             + V  MLI     +             +L  D FT           S  P  ++  K+
Sbjct: 164 CMMTVCNMLIHGCVGEVICH--------DSLMPDKFTDGWKVNPTLQFSGLPSIRRISKE 215

Query: 309 KDAVEKEHKN 318
           + A      N
Sbjct: 216 EYADNHTADN 225


>gi|51209446|ref|YP_063409.1| cpp14 [Campylobacter coli]
 gi|39979654|gb|AAR29498.1| cpp14 [Campylobacter coli]
          Length = 1932

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLND--------------PTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L      S  S IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K     +     V+  +  D +      G    + ND
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507

Query: 447 DQRRQ 451
            +  +
Sbjct: 508 FRINE 512


>gi|294011835|ref|YP_003545295.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium japonicum UT26S]
 gi|292675165|dbj|BAI96683.1| putative type I restriction-modification system methyltransferase
           subunit [Sphingobium japonicum UT26S]
          Length = 267

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 8/191 (4%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ + +  ++ P  V+  I+  L        +     F TP  V  +           + 
Sbjct: 74  FAEVTMALESEPGDVLGAIFGEL-----ELHNAARGQFFTPYSVCRMMAEATGIDSQEMR 128

Query: 200 K-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
              +     T  +P CG G  +      +   G+       L     +++     +C   
Sbjct: 129 DIIACEGFVTAMEPACGAGAMVIALAETMR--GADINYQRHLHVTAVDIDRRAVHMCYIQ 186

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           + +  + +      S +++              +   L+N       +    A+ +   +
Sbjct: 187 LSLLHVPAVVIVGDSLSLKMQDYWYTPAHILGGWTQKLANRHRRPSDDDASPAIVRPSPH 246

Query: 319 GELGRFGPGLP 329
               R   G P
Sbjct: 247 DAGPRIVIGPP 257


>gi|51209527|ref|YP_063459.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121999261|ref|YP_001004014.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|39979705|gb|AAR29548.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87248838|gb|EAQ71802.1| cpp14 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 70/365 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLND--------------PTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L      S  S IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K     +     V+  +  D +      G    + ND
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507

Query: 447 DQRRQ 451
            +  +
Sbjct: 508 FRINE 512


>gi|257899565|ref|ZP_05679218.1| adenine-specific methyltransferase [Enterococcus faecium Com15]
 gi|257837477|gb|EEV62551.1| adenine-specific methyltransferase [Enterococcus faecium Com15]
          Length = 339

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 109/341 (31%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E A  +  + +    +   P+         + 
Sbjct: 31  SFLEAYVENAENLIDDYQVRVVDGVPAKETAQRITALYEELKKLSFEPEEWR-----RLS 85

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 86  QLLLLKGNQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKEPVKILDIAAGMGNL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 141 LLTVLLNLSNAGYQTEG------FGVDIDDTLLAVAAS----------TSDLTQANVQY- 183

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 184 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 230

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 231 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 282

Query: 396 DLFFRTNIATYLWILSNRKT-EERRGKVQLINATDLWTSIR 435
           +LF        + IL  +    ++  +V L+    L    +
Sbjct: 283 ELFRNKQSQKSILILQKKGPQAKQVKEVLLVKLASLKEPEK 323


>gi|297567700|ref|YP_003686671.1| hypothetical protein Mesil_3351 [Meiothermus silvanus DSM 9946]
 gi|296852149|gb|ADH65163.1| hypothetical protein Mesil_3351 [Meiothermus silvanus DSM 9946]
          Length = 1338

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 41/170 (24%)

Query: 154 VMSNIYEHLI--------RRFGSEV----SEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            + ++YE ++         R+  E      + +  + TPR++V L     L P      +
Sbjct: 390 EIGHVYEEILALSPRLVEGRYSLESHLLERKSSGSYYTPRELVQLVVQEALAPVLEERLK 449

Query: 202 SPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------- 241
           + G              + DP  G+G FL  A+ ++A   +  +                
Sbjct: 450 AAGEDLEAQVSALLSLRVIDPAMGSGAFLISALEYLAQRLAELRQKANPQSEFARLYEEA 509

Query: 242 --------PHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTL 282
                    +G +L P    +    + I       P   L  +++ G++L
Sbjct: 510 RHEVAARCIYGVDLNPMAVELAKLSLWIAAAARGRPLSFLDHHLKVGNSL 559


>gi|124008031|ref|ZP_01692730.1| hypothetical protein M23134_01573 [Microscilla marina ATCC 23134]
 gi|123986445|gb|EAY26251.1| hypothetical protein M23134_01573 [Microscilla marina ATCC 23134]
          Length = 431

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 76/194 (39%), Gaps = 15/194 (7%)

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE--SEIRRWLLENDLIEAIVALPTD-LF 398
           L ++L         +A+V S++ L+ G   +    + +R  LL++ ++ AIVALP++  F
Sbjct: 248 LVSELLPYIKQARMSALVTSAAILYKGSPRNEYEVANLRIELLKSGMLRAIVALPSNQKF 307

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
           +   I   + +     T +R  +V +INA  +  +        + +  +   +I++    
Sbjct: 308 YSR-IKMVMLVFD---TSQRFDEVVVINAEHINQAKTR----YKTLETEDIEKIVNTIEQ 359

Query: 459 RENGK-FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLD 517
           R+  + FS++          + +     +     K  L  LE      +     ++   +
Sbjct: 360 RKEVEFFSKVYKNEQLYDAHMGMNIAALVPAKATKEELKSLEE---LAQEEQTLKTRLAE 416

Query: 518 ILKPMMQQIYPYGW 531
           +   +   I     
Sbjct: 417 LRGTLDNNIGDLLD 430


>gi|116254493|ref|YP_770329.1| putative restriction modification methylase [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115259141|emb|CAK10253.1| putative restriction modification methylase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 565

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 88/288 (30%), Gaps = 43/288 (14%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +  P    D  +++IY  L+ R   +  +    + TP  +V      L      L +   
Sbjct: 96  DSLPHAWSDHAIASIYAVLMPR---DRRKQLGAYFTPPHLVDHLVWRLQACGMDLGR--- 149

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHV-------ADCGSHHKIPPILVPHGQELEPETHAVCV 256
                L DP  G   FL      +                   +   G E+EPE   +  
Sbjct: 150 ---DRLRDPAAGGAAFLVPLARLMISEWRSAGATDLEILTRLPIRLLGSEIEPELAIIA- 205

Query: 257 AGMLIRRLESDPRRDLSKN------IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
              L+ R+        ++       +Q   +L++   T     + + NPPF +    D  
Sbjct: 206 -NALLHRMLVKEFGIDAEKAAGIGLVQTDDSLAE-GRTNGDVDHEIGNPPFLRLSRLDHA 263

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                  +   GR            +        +       GG    +L +S L  G  
Sbjct: 264 QARPRFADISSGR------------LNLYAMFVRRALEAVPVGGLVGYILPASFL--GGP 309

Query: 371 GSGESEIRRWLLENDLIEAI--VALPTDLFFRTNIATYLWILSNRKTE 416
               S  RR +L+   + AI  V   +D+F          IL  R+  
Sbjct: 310 E--FSLFRRRVLQLAEVLAIDMVEKRSDVFLDAIQDACFLILRRRRAP 355


>gi|291546630|emb|CBL19738.1| N-6 DNA Methylase [Ruminococcus sp. SR1/5]
          Length = 734

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 96/317 (30%), Gaps = 79/317 (24%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           Y+    F+D    I     F+  I  L    LL K  ++F   ++ P      +   ++E
Sbjct: 281 YVNGGLFADETIEIPP---FTEEIKEL----LLTKASEDFDWSDISPT-----IFGAVFE 328

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----------------DALFKESP 203
             +     E         T  + +H   + L   D                 D   +E  
Sbjct: 329 STL---NPETRRSGGMHYTSIENIHKVISPLFLEDLQKEFDSIRAIQVKRTRDKKLEEFQ 385

Query: 204 GMIR--TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244
             +   T +DP CG+G FLT+    +    +      +                    +G
Sbjct: 386 NKLASLTFFDPACGSGNFLTETYLSLRRLENEVIKEKVGGQMTLVEVNNPIRVSIQQFYG 445

Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTL---SKDLF 287
            E+      V    + I                  D     +  NI +G+ L     D+ 
Sbjct: 446 IEINDFAVTVAKTALWIAESQMLEETKNIVYGFNDDFLPLKTYVNITEGNALRIDWNDVI 505

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             ++  + + NPPF        +  E   K  E           S G++ ++     K  
Sbjct: 506 PAEKLSFIMGNPPFVGARWMASEQKEDVEKIFEGW--------KSIGNLDYVSCWYKKAA 557

Query: 348 LP-PNGGGRAAIVLSSS 363
               N   RAA+V ++S
Sbjct: 558 DYMGNYNIRAALVSTNS 574


>gi|218132264|ref|ZP_03461068.1| hypothetical protein BACPEC_00121 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992779|gb|EEC58780.1| hypothetical protein BACPEC_00121 [Bacteroides pectinophilus ATCC
           43243]
          Length = 139

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
           +     L      GG   +V+  S       G+   E+R  LL+   ++A+ ++P ++F+
Sbjct: 42  LEFVEHLLDILTIGGIGVVVVPMSC----AIGTKFKEVRERLLKKHTLKAVFSMPDEIFY 97

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
            T     + +           +       D     +    K
Sbjct: 98  PTATNVCVMVWEAHNPHNEMVETFFGYCKDDGFEKKKICWK 138


>gi|239835171|ref|ZP_04683497.1| DNA methylase [Ochrobactrum intermedium LMG 3301]
 gi|239821147|gb|EEQ92718.1| DNA methylase [Ochrobactrum intermedium LMG 3301]
          Length = 3526

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 76/252 (30%), Gaps = 56/252 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  S       T  ++V    ++         +        + +P+ G+G FL  A
Sbjct: 613 EEYRAAESSTRNAHYTSPEIVKAIWSVA--------QRLGFRGGRVLEPSVGSGNFLGLA 664

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +                G EL+P T  +              +   + NI+      
Sbjct: 665 PGALK---------GRAQFTGAELDPITGGIAK------------QLYPAANIKAPLGFQ 703

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                   F   + NPPFG +   D        K  E  RF                +  
Sbjct: 704 DLQIPDNYFELAVGNPPFGSERLYDP-------KRKEAARFSIH------------NYFF 744

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A+V+++S +      +  +  R ++ +   +   + LP + F     
Sbjct: 745 AKSVETLKPGGVLAMVITNSFM-----DAANTAARAYIADRARLVGAIRLPNNAFLANAG 799

Query: 401 TNIATYLWILSN 412
           T + T + IL  
Sbjct: 800 TEVTTDIVILQK 811


>gi|291540174|emb|CBL13285.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2510

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/402 (13%), Positives = 106/402 (26%), Gaps = 82/402 (20%)

Query: 40   LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            + +R     +  ++   E       +  D +  +   G+          +     N   N
Sbjct: 805  VYKRFFDIEDSVKANRLETRERAIANGWDTK--IDENGHVVS-----DDAAQKKHNFHYN 857

Query: 100  LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRV 154
            L       +        + D   T+ ++E    L      K+   F G         +  
Sbjct: 858  LWEMEKGGAKTRYQ--WNMDAIRTLKQIESGNRLATPEEQKVLSKFVGWGGLSQAFDEEN 915

Query: 155  MSNIYEH-----LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                 E+     L+    + +  +     F T  ++     + L+        +      
Sbjct: 916  AGWSKEYAELKELLSDEEYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRGG 967

Query: 208  TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
             + +P+ G G F       V +             +G EL+  +  +             
Sbjct: 968  NVLEPSMGIGNFFGSMPETVHEAK----------LYGVELDSISGRIAK----------- 1006

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +   + NI   +      +    F   + N PFG     D    +   +  +       
Sbjct: 1007 -QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY------ 1058

Query: 328  LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                             K       GG  A++ +   L           IR++L E   +
Sbjct: 1059 --------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAEL 1099

Query: 388  EAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424
               V LP   F     T +   +  L    RK +     V L
Sbjct: 1100 VGAVRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1141


>gi|332827221|gb|EGJ99995.1| hypothetical protein HMPREF9455_03689 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1937

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 82/279 (29%), Gaps = 54/279 (19%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R   S  +     F TP+ V+   T             S    +   +P+ GTG F++  
Sbjct: 92  RSVSSLKNSVLTAFYTPKPVIDALT--------LALNNSGIKPQRFLEPSAGTGAFISSF 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V D                             +L  ++ S    +    I+    + 
Sbjct: 144 KETVPDAEVTGFEK--------------------DLLTGKILSHLHPEDKIRIEGYEKM- 182

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +    + +    SN PFG     D    + E            +P +S  +     +  
Sbjct: 183 -EGRYSQHYDVIASNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFF 229

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
            K  +    GG  A + S   L + +       IR  L+ +  + + + LP +LF     
Sbjct: 230 TKSVMAAREGGLIAFITSQGVLNSEQN----KPIREHLMNSCNVVSAIRLPNNLFTEEAG 285

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
           T + + L IL  +        +        +   R    
Sbjct: 286 TEVGSDLIILQRK-----NDNILPTQRQQDFIESRKLSN 319


>gi|237751872|ref|ZP_04582352.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376705|gb|EEO26796.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 1935

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 113/371 (30%), Gaps = 70/371 (18%)

Query: 95  NTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP- 151
           +    L S    F  N  AI   +  +  +  A  ++  +L      FSG    P     
Sbjct: 196 DDEIYLGSLKDRFQKNIHAIKLLKTIEQENRYATKQEQEIL----NRFSGWGGIPQAFDH 251

Query: 152 -DRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            ++     ++ LI       + +      + F TP+ V+           + L   +   
Sbjct: 252 QNKEWEKEFKELISTLDYTEYENAKLSTLDAFYTPKIVIDTIYQ----GLNHLGFNNDKH 307

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            + +++P+ G G FL+ A N+                   EL+  +  +  +        
Sbjct: 308 TKEIFEPSAGIGSFLSYAKNY----------SNNYHFTCIELDSISSNILKS-------- 349

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                 L  N    +   +     K +   + NPPFG+K   D +       +       
Sbjct: 350 ------LHPNQTIYNKAFEHHLFDKPYDAFIGNPPFGQKKVLDPNDTTLNKSSVHNY--- 400

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                       F+ +    L+      G AA V+SS  L      S  + IR ++ E  
Sbjct: 401 ------------FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNNTIRDYIAEQA 439

Query: 386 LIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQ--LINATDLWTSIRNEGKK 440
                V LP + F     T + T +      K      K    +    D +      G  
Sbjct: 440 TFLGAVRLPNNAFKKRANTEVTTDIIFFKKGKDLNIDNKWLESVEYYEDRFDEAEKRGLN 499

Query: 441 RRIINDDQRRQ 451
             I +  +  +
Sbjct: 500 HNIFSYFRINE 510


>gi|325568565|ref|ZP_08144858.1| superfamily II DNA/RNA helicase [Enterococcus casseliflavus ATCC
            12755]
 gi|325157603|gb|EGC69759.1| superfamily II DNA/RNA helicase [Enterococcus casseliflavus ATCC
            12755]
          Length = 1561

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 87/304 (28%), Gaps = 36/304 (11%)

Query: 108  SDNAKAIFEDFD-FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
            S+    I E+   F       ++    Y   K  +    + +     ++  +Y+    + 
Sbjct: 796  SEAMDKIVEELSRFGGFNKEQDELKEFYDSVKLRAEGIDNAEAKQRIII-TLYDKFFSKG 854

Query: 167  GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMN 225
              E ++      TP +VV      + D     F K        + DP  GTG F+   ++
Sbjct: 855  FKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKAIEDEGVHILDPFTGTGTFIVRTLH 914

Query: 226  HVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQ 277
            ++ D  ++ K              H  E+   ++ +    +     E +       + I 
Sbjct: 915  YLKDKLANGKITLADITRKYTQELHANEIVLLSYYIAAINIESTFAEMNHEEYKPFEGIV 974

Query: 278  QGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKN 318
               T      +D      F                  + NPP+        D  +     
Sbjct: 975  LTDTFESTEQEDTLDDSFFGTNDERLKRQQKVPITVIIGNPPYSVGQSNANDNNQNVSHP 1034

Query: 319  GELGRFGPGLPKISDGSMLFLMH-----LANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                R      K S  ++L  ++                 G    V + S + + +  SG
Sbjct: 1035 KLNSRIAETYVKNSKANLLRNLYDDFVKGFRWASDRIGKTGVIGFVTNGSFI-DSQTMSG 1093

Query: 374  ESEI 377
              + 
Sbjct: 1094 MRKC 1097


>gi|269797183|ref|YP_003311083.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
 gi|269093812|gb|ACZ23803.1| N-6 DNA methylase [Veillonella parvula DSM 2008]
          Length = 577

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 65/158 (41%), Gaps = 21/158 (13%)

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISDGSMLFLMH 341
           KD+   + F   L+ P +    +  +   E+   +         +P  K++DG    ++ 
Sbjct: 199 KDIVENQLFDRILTMPLWRPSSKAMEYFPERTSLSKLD------VPESKVADGEWHEILF 252

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             + L    +  G+   ++++S L    A +   + R+ L+EN  IE+I+ LP  L   T
Sbjct: 253 NLSLL----DQNGKMVTLITNSTL----ANNLSVKTRQALVENGYIESIIELPDRLLENT 304

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            I  Y  +LS          V+ ++A+  +   R    
Sbjct: 305 GIELYAVVLS-----YGNKGVKFLDASQAYVEQRRRKD 337


>gi|323693253|ref|ZP_08107471.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
 gi|323502736|gb|EGB18580.1| SNF2 family N-domain-containing protein [Clostridium symbiosum
            WAL-14673]
          Length = 2971

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/406 (14%), Positives = 110/406 (27%), Gaps = 82/406 (20%)

Query: 53   SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             A+  +     G   + E  +  +G   Y+ S        + NT     +    F  N +
Sbjct: 1280 EALTGENDTEPGKASEKEPEIDKSGAVNYHISFN-----EAENTGKGF-APKEKFRQNIE 1333

Query: 113  AI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-----R 165
            AI   E  +     A  E+  +L K        +    +  +    N Y+ L        
Sbjct: 1334 AIRTLEKIEGEHRTATPEEQEILAKYVGWGGLADAFDSSKANWA--NEYQELKSLLSPEE 1391

Query: 166  FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAM 224
            + S          T   ++      +            G  R  + DP  G G F     
Sbjct: 1392 YASARESTLNAHYTSPVIIQAIYDAV---------GKMGFTRGNVLDPAAGIGNFYGCLP 1442

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              + +             +G EL+  T  +              +     +I+  +    
Sbjct: 1443 EGMKE----------SRLYGAELDGLTGRIAK------------QLYPHADIK-ITGFEN 1479

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG+    D+   +      +                        
Sbjct: 1480 TSYPNDFFDVAVGNVPFGQYKVSDRKYDKHNFLIHDY--------------------FFA 1519

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A V S   +          E+R++L +   +   V LP   F     T
Sbjct: 1520 KTLDKVRPGGIVAFVTSKGTMDKKNP-----EVRKYLAQRAELLGAVRLPNTAFKENAGT 1574

Query: 402  NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
             + + +  L        R +V  I    +  + ++     +   D 
Sbjct: 1575 EVTSDILFLKK------RDRVMDIEPDWVHLTEKDGIVMNQYFADH 1614


>gi|305663147|ref|YP_003859435.1| N-6 DNA methylase [Ignisphaera aggregans DSM 17230]
 gi|304377716|gb|ADM27555.1| N-6 DNA methylase [Ignisphaera aggregans DSM 17230]
          Length = 701

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 82/277 (29%), Gaps = 43/277 (15%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +  +   +E LI             F TP  +  L    +    +            + D
Sbjct: 129 NDELGKAFEELIPN---AERRKLGQFFTPIPIADLMVEYIRRNVERG---------RIVD 176

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  GTG         +        I       G ++ P    +    +      S     
Sbjct: 177 PAVGTG-------RFILRLMLKSGISKDYRITGIDVSPLMILLTATNI------SYVSDL 223

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               +  G     D    K     + NPP+ +  E + D   K  +  +       L + 
Sbjct: 224 KRLELIVGDMFDLDD-AIKESDAIICNPPYSRHHELEPDYKRKLQEKVKAAS-DVTLSRY 281

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S     F  +    L      GG  + +    PL    A   +  ++R++ E++L+E ++
Sbjct: 282 SS----FFAYALLYLSSLLKKGGYVSYI---CPLEIFEANYSDV-VKRYVAEHNLLERVI 333

Query: 392 ALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLI 425
               D F   +  N AT +  L          KV  +
Sbjct: 334 VFDEDSFIFPYAENAATVI-FLHKDSP----TKVYFV 365


>gi|240145259|ref|ZP_04743860.1| superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82]
 gi|257202613|gb|EEV00898.1| superfamily II DNA and RNA helicase [Roseburia intestinalis L1-82]
          Length = 1278

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 110/407 (27%), Gaps = 80/407 (19%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
            +    +K L    + +  E   +      +N        +        +      F +N
Sbjct: 355 EKIGYIQKLLEQEKTELPPEEKTEAPAADRHNF------RINDDAIG--VGGAKEKFRNN 406

Query: 111 AKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLI-R 164
             AI    + +  + +A  E+  +L +    + G+ +  D            +Y  L   
Sbjct: 407 MAAINLLHELEIENRLATPEEQEVLSRYVG-WGGLSMAFDEHNAAWAEEFKELYASLSPE 465

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + + +      F TP  V+      L          S G    + +P+CGTG F     
Sbjct: 466 EYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGTGNFFGLLP 517

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +               HG E++  T  +              +     NI       K
Sbjct: 518 ESMQ----------NSKLHGVEIDSLTGRIAK------------QLYQKANIAIE-GFEK 554

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   L N PFG+    D     ++    +                        
Sbjct: 555 TNLPDDHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------------FFA 594

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       GG    + S   +          E+R+++ +   +   + LP + F     T
Sbjct: 595 KALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFKANAGT 649

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            + + + IL        R +V  I    +       G        + 
Sbjct: 650 EVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 690


>gi|313669163|ref|YP_004049447.1| hypothetical protein NLA_18890 [Neisseria lactamica ST-640]
 gi|313006625|emb|CBN88091.1| hypothetical protein NLA_18890 [Neisseria lactamica 020-06]
          Length = 954

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 63/263 (23%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           YI    FS       ++F F++++ R         + +    I+     +   +   +++
Sbjct: 284 YINGKLFS----DGIDEFVFNASMRR--------TLLEC-CEIDW--SLISPDIFGTLFQ 328

Query: 161 HLIRRFGSEVS-------EGAEDFMTP-RDVVHLATALLLDPDDALFKESPG-------- 204
           +++    +                 T  +++      L LD   A  +++ G        
Sbjct: 329 NIMENADALGGGKKSAHRRELGAHYTSEKNIKRAIAPLFLDRLKAELEQAAGDPKKLARY 388

Query: 205 ----MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------PILVPHGQE 246
                   + DP CG G FL  A   +                         +   HG E
Sbjct: 389 ITRLQTLQILDPACGCGNFLIVAYREIRLLEMQAIRQLARIPGAQQMQSQCDVHQFHGIE 448

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDL---------SKNIQQGSTL---SKDLFTGKRFHY 294
           ++P    +    M +   + +                +I+  + L     D  + +   Y
Sbjct: 449 IDPAAVEIATVAMWLTDHQMNRLYQDGYKRIPLAHKADIRCANALQTDWADTISPQNLDY 508

Query: 295 CLSNPPFGKKWEKDKDAVEKEHK 317
            + NPPF  K E++ +  +   K
Sbjct: 509 IVGNPPFLGKKEQNAEQKKDMEK 531


>gi|291535497|emb|CBL08609.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2587

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 110/407 (27%), Gaps = 80/407 (19%)

Query: 51   TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
             +    +K L    + +  E   +      +N        +        +      F +N
Sbjct: 967  EKIEYIQKLLEQEKTELPPEEKTEAPATDRHNF------RITDDAIG--VGGAKEKFRNN 1018

Query: 111  AKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLI-R 164
              AI    + +  + +A  ++  +L +    + G+ +  D            +Y  L   
Sbjct: 1019 MAAINLLHELEIENRLATPKEQEVLSRYVG-WGGLSMAFDEHNAAWAEEFKELYASLSPE 1077

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + + +      F TP  V+      L          S G    + +P+CGTG F     
Sbjct: 1078 EYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGTGNFFGLLP 1129

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              +               HG E++  T  +              +     NI       K
Sbjct: 1130 ESMQ----------NSKLHGVEIDSLTGRLAK------------QLYPKANIAIE-GFEK 1166

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                   F   L N PFG+    D     ++    +                        
Sbjct: 1167 TNLPDDHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------------FFA 1206

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG    + S   +          E+R+++ +   +   + LP + F     T
Sbjct: 1207 KALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFKANAGT 1261

Query: 402  NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
             + + + IL        R +V  I    +       G        + 
Sbjct: 1262 EVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 1302


>gi|148656519|ref|YP_001276724.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1]
 gi|148568629|gb|ABQ90774.1| hypothetical protein RoseRS_2397 [Roseiflexus sp. RS-1]
          Length = 792

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 84/282 (29%), Gaps = 68/282 (24%)

Query: 182 DVVHLATALLLDPDDALFKESPGM--IRTLYDPTCGTGGFLTDAMNHVADC--------- 230
           D++ L   L  + + +   E        T+ DPTCG+G FL  A + +A           
Sbjct: 264 DLIRLMGDLCAEWETSRLNELDTALTSLTVLDPTCGSGAFLCAAFDLLAHLMRIVVERHT 323

Query: 231 ---------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL----ESDPRRDLSKNIQ 277
                    G   +       +G ++ PE   +C   + +R      + DP RDL  NI 
Sbjct: 324 AGSVVSVPVGQRLRAIIERTLYGVDVMPEAAEICRMSLWLRLAALVDDPDPLRDLRFNIH 383

Query: 278 QGSTLSKDLFTGKR---------------------------FHYCLSNPPFGKKWEKDKD 310
            G  L+  L                                F   + NPP+  +     D
Sbjct: 384 TGDALTGTLHRSDNAASIDTNYHQRSLHWSTAFPGVLERGGFDVVIGNPPYVVRSGLLSD 443

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              +E++    G     +          +    + L      G     V S +       
Sbjct: 444 PALREYQTAVTGNLYALV----------IERALHLLRPHGWLG-MIVPVASVATDSMKPL 492

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
               + +R+W          V  P  LF   ++   + I+  
Sbjct: 493 QRLYAPLRQW-----HSHYAVR-PGKLFPNVDMNLTITIIQK 528


>gi|332187846|ref|ZP_08389580.1| hypothetical protein SUS17_2990 [Sphingomonas sp. S17]
 gi|332012196|gb|EGI54267.1| hypothetical protein SUS17_2990 [Sphingomonas sp. S17]
          Length = 1105

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 70/250 (28%), Gaps = 56/250 (22%)

Query: 172 EGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT---------------------- 208
                  TPR  V  L T  +++P    + +    + T                      
Sbjct: 355 RRLGAHYTPRAYVERLVTTTVIEPLRDDWAQVLSAMETERTDNPRAAVQRVRDFHRRLAR 414

Query: 209 --LYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPILVPHGQELEP 249
             + DP CGTG FL   +  +                        +       HG E+  
Sbjct: 415 MRILDPACGTGNFLYVTLELMKRLEGEVLEVLAELSGEELLHLDTETVHPRNFHGIEVNA 474

Query: 250 ETHAVCVAGMLI---------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRF---HYCLS 297
              A+    + +             SDP  +  ++I  G  L         +    + + 
Sbjct: 475 RAAAIAQLVLWLGYIRWQLRNGGQVSDPVLEDVQSIVTGDALLTVTGARTAWPEAEFIVG 534

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF     KD      E     L R    +P+ +D  + +    A  L    +   R  
Sbjct: 535 NPPFI--GGKDLRGRLPEGMAEALWRAYAKVPRAADYVLYWWERAAQALAAKGSPLIRFG 592

Query: 358 IVLSSSPLFN 367
            V ++S    
Sbjct: 593 FVTTNSITQT 602


>gi|296283364|ref|ZP_06861362.1| type I restriction-modification system, M subunit, putative
           [Citromicrobium bathyomarinum JL354]
          Length = 1044

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 95/295 (32%), Gaps = 58/295 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S+IYE  +    +E +     F TP  +V      +L      +         + DP+C
Sbjct: 338 ISSIYETFV----TERASRDGIFYTPPHLVDFVLDRVLPWQGEEWDLK------ILDPSC 387

Query: 215 GTGGFLTDAMNHVAD-----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           G+G FL  A   +                  +        G +++P    V    + +  
Sbjct: 388 GSGIFLVKAFQRLVHRWKIGNPGQPVRAELLRRLLERNIFGVDIDPHAVRVACFSLYLAM 447

Query: 264 LE-----SDPRRDLSKNIQQGSTLSKDLFTGKR-----------FHYCLSNPPFGKKWEK 307
            +         +     ++    +  D F   +           F   + N P+G     
Sbjct: 448 CDEIEPRHYWTQVSFPPMRDIRLIRSDFFAETQCGFSCETDTATFDLIIGNAPWG----- 502

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D    +   +     R G  +P  +D   LF+      +EL  + G  A I  +++ LFN
Sbjct: 503 DGVITDAAREWAADERRGWPVPN-NDIGGLFVAKA---MELITDAGHVALIQSANTLLFN 558

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFF----------RTNIATYLWILSN 412
               + E   RR LL    +EAI  L    F            +     + +L+ 
Sbjct: 559 IANTAIE--FRRKLLLTWRVEAIYNLSALRFSVFKRKTHTTKTSAAPVCIVVLAK 611


>gi|212705068|ref|ZP_03313196.1| hypothetical protein DESPIG_03137 [Desulfovibrio piger ATCC 29098]
 gi|212671503|gb|EEB31986.1| hypothetical protein DESPIG_03137 [Desulfovibrio piger ATCC 29098]
          Length = 199

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 21/133 (15%)

Query: 138 KNFSGIE----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            +F+        +  T  +  +  +YE          +     + TP  V  L   +   
Sbjct: 7   DHFANATAYLLDYMRTTNEETLGPLYEEY------AANHYTGQYFTPSSVARLMAKIT-- 58

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
                          + DP CG G  L  A           +     +  GQ+++     
Sbjct: 59  ----HTAPPETGRFKVLDPACGAGACLIAAAK-----EQTFEQNGRAIFVGQDIDLNCAR 109

Query: 254 VCVAGMLIRRLES 266
           +    ++   L+ 
Sbjct: 110 MTALNLMFFNLDG 122


>gi|163816394|ref|ZP_02207760.1| hypothetical protein COPEUT_02583 [Coprococcus eutactus ATCC 27759]
 gi|158448391|gb|EDP25386.1| hypothetical protein COPEUT_02583 [Coprococcus eutactus ATCC 27759]
          Length = 735

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/405 (14%), Positives = 121/405 (29%), Gaps = 76/405 (18%)

Query: 38  FTLLRR-------LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90
           F   +R       L    + T+  + + +          +  +  +  + Y  +   +  
Sbjct: 23  FGFYKRNFGHIYYLSVKDDETK-FIDKMFGKVENKLSAQDKMLNYSISAIYTATAVLIEL 81

Query: 91  LGSTNTRNN---LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L       N   +E     FS N K I  +  F+    +     L   +           
Sbjct: 82  LNRKGIEYNENQIEKICVGFS-NMKNI--EISFADKTEKELDEILFGLLTDGID------ 132

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                                E  + +    TP +++     ++   +           +
Sbjct: 133 --------------------LESRKKSGSERTPDEIIKYMLDIIGYNEIVSIS------K 166

Query: 208 TLYDPTCGTGGFLTDAMN-HVADCGSHH----------KIPPILVPHGQELEPETHAVCV 256
           T+ DP CGTG F+   ++  +     +           +   I     +        + +
Sbjct: 167 TIVDPACGTGTFIKQIIDRFIDGLYVNQVTNTYKEKLLERKLIRAYDTKPSNVFVTKIVI 226

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TGKRFHYCLSNPPFG--KKWEKDKDAVE 313
              L+++      +D+   I++     +D    G    Y + NPP+   +    +     
Sbjct: 227 ISSLVKKNLICEIKDVLDMIRKLPVYCQDFLCVGDNSDYIIGNPPYIRLQNMPVEYRDFI 286

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           K +     GRF             FL     K +   N  GR  ++ S+  L    A  G
Sbjct: 287 KNNFVSATGRFDIFT--------CFLE----KSDKLLNKNGRMCLITSNKYL---TANYG 331

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEER 418
              IR +L +   +  +V L    FF   +   + +  N K++  
Sbjct: 332 VG-IRAYLSQAGHVRKLVDLYDTKFFGAAVLPAIIMCENSKSDNC 375


>gi|152973689|ref|YP_001338729.1| hypothetical protein KPN_pKPN4p07120 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|294496764|ref|YP_003560457.1| hypothetical protein pKpQIL_p080 [Klebsiella pneumoniae]
 gi|150958471|gb|ABR80499.1| hypothetical protein KPN_pKPN4p07120 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|293339473|gb|ADE44027.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 277

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 21/153 (13%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           +  + + F  +    +      +  I+  L              + TP  V  L   +L+
Sbjct: 103 IANMQEMFCLMVCALEAKFHDFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMARMLM 157

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--ELEPE 250
                  +     I T+ DP CG  G L      + +      I P +   G   +++P 
Sbjct: 158 PGVRDTIRRE--GIATVSDPACGAAGMLIAYAECLLE----ADINPSMHMFGSCIDIDPV 211

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +    + +  +        +  +  G+TL+
Sbjct: 212 AADMAFIQLSLLGI--------AAEVVTGNTLT 236


>gi|256649300|dbj|BAI15241.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-32]
          Length = 1362

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160
               S   +++ +  D   ++ +  +A  L      + +  SGI+         V+  +Y+
Sbjct: 698  NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219
               +    ++ E      TP +VV      + D  +  F ++ G     + DP  GTG F
Sbjct: 753  GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265
            +T  +          +       H  E+    + +    +      L+            
Sbjct: 813  ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872

Query: 266  SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312
            +D  R    +   GSTL  +               + NPP+    E   D        A+
Sbjct: 873  TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932

Query: 313  EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++        R      +    S +                G    V ++  L    A  
Sbjct: 933  DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989

Query: 373  GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417
                +R+ L E      +  L  +              +F   +     + I+      +
Sbjct: 990  ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045

Query: 418  RRGKVQLINATDLWTSIRNEG 438
             +G++   +  D  T  +   
Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066


>gi|118576202|ref|YP_875945.1| helicase [Cenarchaeum symbiosum A]
 gi|118194723|gb|ABK77641.1| helicase [Cenarchaeum symbiosum A]
          Length = 1175

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 72/253 (28%), Gaps = 37/253 (14%)

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213
            +  IY   +  F  +         TP +V+      + D     FK S       ++DP 
Sbjct: 823  IKKIYGSFLEGFDPDNQSRNGIVYTPDEVIDFIIHSVQDVLKHHFKSSLTDTSVKVFDPF 882

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDL 272
             GTG F+T  +                     EL    + V    +        +     
Sbjct: 883  TGTGAFVTHLLESGLIGKEKLYRKYKHDIWVNELSLLAYYVASVNIESTYASIRNGGHVS 942

Query: 273  SKNIQQGSTLSKDLFTGKRF------------------------------HYCLSNPPFG 302
             ++I    TL+      +R                               H  + NPP+ 
Sbjct: 943  FESINYTDTLTH--HPTQRVDKSKRGKIIKLAGKMEEINENIQKINMQHIHVIMGNPPYS 1000

Query: 303  KKWEKDKDA-VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG--GRAAIV 359
               E  K   ++   K+     F    P+  + + LF  ++ +        G  G  A V
Sbjct: 1001 FANENAKYPLIDARIKDTYAMEFKRKYPEGGNINSLFDSYIRSIRWASDRIGNAGVIAFV 1060

Query: 360  LSSSPLFNGRAGS 372
             ++  L N  A  
Sbjct: 1061 TNAGFLRNSSAAG 1073


>gi|68164395|ref|YP_247529.1| hypothetical protein pTet_01 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|60617801|gb|AAX31282.1| pTet01 [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 1932

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 115/365 (31%), Gaps = 70/365 (19%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 202 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 261

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 262 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 317

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 318 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 353

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   +                 P L K S 
Sbjct: 354 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILEFKY--------------PTLNKTSV 399

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            +  F+ +    L+      G AA V+SS  L      S  S IR ++ E       V L
Sbjct: 400 HNY-FIGNAIKNLKED----GIAAFVVSSYFL-----DSKNSTIRNFIAEQATFLGAVRL 449

Query: 394 PTDLF---FRTNIATYLWILSNRK----TEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           P + F     T + T +      K     +     V+  +  D +      G    + ND
Sbjct: 450 PNNAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYD--DRFDEAEKRGMHPDVFND 507

Query: 447 DQRRQ 451
            +  +
Sbjct: 508 FRINE 512


>gi|307244222|ref|ZP_07526337.1| conserved domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306492372|gb|EFM64410.1| conserved domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 67

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 25/58 (43%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
                    V+  IYE+LI +F +   + A +F TP +V  L + ++ +      +  
Sbjct: 6   PMDGKQDYDVLGFIYEYLISQFAANAGKKAGEFYTPHEVSVLMSEIVAEHLKGKKEIK 63


>gi|262371269|ref|ZP_06064588.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262313743|gb|EEY94791.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 241

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 38/243 (15%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
            EPT+    +K+       +  E F+K+        S + +     T +   L + ++  
Sbjct: 7   FEPTK----KKFSFQELEKLFDEIFLKIDRSK----SRFEVFKDFVTCSACALRNSLSGI 58

Query: 108 SDN--AKAIFEDF-DFSSTIARLEKAGL--LYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           S N   +++ +++    +  ++ +K+ +  L+ +          P      V+ ++Y   
Sbjct: 59  SKNLVVQSLEDEYHKIMAKYSKEDKSNIHHLFGLLIAMMEARALPH----DVLGDLYMRF 114

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
              FGS  +       TP  + +L   +       L K+   +  +  DP CG G  L  
Sbjct: 115 --EFGSSHN---GQHFTPTHISNLLAVMNSGQIPELIKQKGYV--SCVDPACGAGSTLLA 167

Query: 223 AMNHVADCGSHHKIPPILVPH--GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +  V          P    +  G +++     +C   + +         ++   +  G 
Sbjct: 168 KVKCV----IDGGFNPAKHLYMEGTDIDRLVALMCYVQLSL--------WNVPGRVFVGD 215

Query: 281 TLS 283
           +L+
Sbjct: 216 SLT 218


>gi|308182843|ref|YP_003926970.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4]
 gi|308065028|gb|ADO06920.1| hypothetical protein HPPC_03450 [Helicobacter pylori PeCan4]
          Length = 1606

 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/541 (12%), Positives = 145/541 (26%), Gaps = 95/541 (17%)

Query: 36   LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
            L     +        L+  +  +          ++     +                 + 
Sbjct: 750  LKMIFEKNPEFFHGFLDSLKENIHANIREDEALDMITSHIITKP----------IFDAIF 799

Query: 93   STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
              N +N +   +                      L+    LY+  K  +       +  +
Sbjct: 800  GDNIQNPIAKALDKMVLK----LSSLGLEGETKDLKN---LYESVKTEAARAKSQKSQQE 852

Query: 153  RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
              + N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 853  L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQNITIFD 911

Query: 212  PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            P  GTG F+    +  +        K          ++   ++ + +  +       D  
Sbjct: 912  PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 971

Query: 270  RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWE 306
                KNI    +L                        KD   G+     + NPP+    +
Sbjct: 972  LKNFKNIALTDSLDIYEEKNDKGVLPIFEDLKENKDIKDTLAGQNIRVIIGNPPYSSGAK 1031

Query: 307  KDKD-----AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
             + D     +  K  K            K+   +   L+             G    V++
Sbjct: 1032 SENDNNQNLSHPKLEKKVYETYGKNSTAKVGATTRDTLIQSIRMASDLLKDKGVLGFVVN 1091

Query: 362  SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
             S + +  A       R+ + +                      +L++L+          
Sbjct: 1092 GSFIDSKSADG----FRKCVAKE-------------------FAHLYVLN---------- 1118

Query: 422  VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVL 481
               +NA     + + EG K  I +   R  I  I+      K +      T  Y    V 
Sbjct: 1119 -LRVNARTSGETFKKEGGK--IFDSGSRATIAIIF--FVKDKNA---PNHTIFYYE--VE 1168

Query: 482  RPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIK 541
              L+    L+          + +++++P ++  W++      +++ P    +    +SI 
Sbjct: 1169 DYLKREAKLNLLAGFENLDLVPFKEITPNNKGDWINQRNDGFEKLIPLKRDKKLQNDSIF 1228

Query: 542  S 542
             
Sbjct: 1229 D 1229


>gi|256655344|dbj|BAI21271.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-12]
          Length = 1352

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160
               S   +++ +  D   ++ +  +A  L      + +  SGI+         V+  +Y+
Sbjct: 698  NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219
               +    ++ E      TP +VV      + D  +  F ++ G     + DP  GTG F
Sbjct: 753  GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265
            +T  +          +       H  E+    + +    +      L+            
Sbjct: 813  ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872

Query: 266  SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312
            +D  R    +   GSTL  +               + NPP+    E   D        A+
Sbjct: 873  TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932

Query: 313  EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++        R      +    S +                G    V ++  L    A  
Sbjct: 933  DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989

Query: 373  GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417
                +R+ L E      +  L  +              +F   +     + I+      +
Sbjct: 990  ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045

Query: 418  RRGKVQLINATDLWTSIRNEG 438
             +G++   +  D  T  +   
Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066


>gi|86609160|ref|YP_477922.1| hypothetical protein CYB_1700 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557702|gb|ABD02659.1| conserved hypothetical protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1504

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 53/202 (26%)

Query: 134 YKICKNFSGIELHPDT------------VPDRVMSNIYEHLIR------------RFGSE 169
             + + FS +  + +             +    + ++YE L+             RF   
Sbjct: 361 RDLLQAFSHLAYYRENPTSPLRRVNYAALDVEELGSVYESLLDYQPQIVTGQGAPRFELS 420

Query: 170 VS---EGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT--------LYDPTCGTG 217
                +    + TP + V  L  + L    +   K +              + DP CG+G
Sbjct: 421 YGSERKSTGSYYTPPELVAELIRSALEPVIEERLKAARPPEEKEQAILSIRVCDPACGSG 480

Query: 218 GFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            FL  A   +                       +       +G +  P    +C   + +
Sbjct: 481 HFLLAAARRLGKELAKIRTGEEEPAPKRVREAIRDVVAHCIYGVDKNPLAVELCRVALWL 540

Query: 262 RRL-ESDPRRDLSKNIQQGSTL 282
                  P   L  +I+ G +L
Sbjct: 541 EAHCAGKPLTFLDHHIKCGDSL 562


>gi|290956133|ref|YP_003487315.1| hypothetical protein SCAB_16141 [Streptomyces scabiei 87.22]
 gi|260645659|emb|CBG68750.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1343

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 61/237 (25%)

Query: 149 TVPDRVMSNIYEHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            +    + ++YE L+                       +    + TP  ++       LD
Sbjct: 421 HLDAEELGSVYESLLELEPKHSTADRTFTLVEVAGNTRKTTGSYYTPSSLIECLLDSTLD 480

Query: 194 P-------------------DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------- 227
           P                   D A    +  +  T+ DP CG+G FL  +   +       
Sbjct: 481 PVIRDAVKRGEEAASKSGATDPADAIVNELLSLTVCDPACGSGHFLVASARRIAKQVAAV 540

Query: 228 ADCGSHHKIPPILV---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQ 277
            +      +  +            +G +L P    +    + +  LE   P   L  +++
Sbjct: 541 RERNPEPTLDAVRHALHEVVARCIYGVDLNPMAVELAKVSLWLEALEPGKPLGFLDAHVK 600

Query: 278 QGS-------TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            G+        L +D      F     +    KK  K  + + ++ + G+   F  G
Sbjct: 601 HGNGLIGATPKLLRDGIPDDAFIATEGD---DKKHAKALEKINQQERVGQGSLFDLG 654


>gi|168217355|ref|ZP_02642980.1| N-6 DNA methylase [Clostridium perfringens NCTC 8239]
 gi|182380622|gb|EDT78101.1| N-6 DNA methylase [Clostridium perfringens NCTC 8239]
          Length = 494

 Score = 52.3 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 50/246 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP+ V       ++D          G  +TL+DP CG           + D  
Sbjct: 23  REIGYYATPQFVARYIGKRIID--------INGKGKTLFDPCCG--------KEELTDYF 66

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S   I  I                   ++  +            I    +          
Sbjct: 67  SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+      + + + +  K+ +      GL    +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNC---HEVNFIRENKKSLKNYFNEVGL---HNMYSMFMSAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S  F  +       +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKT 415
           L   K 
Sbjct: 215 LRKGKE 220


>gi|254821510|ref|ZP_05226511.1| DNA methylase [Mycobacterium intracellulare ATCC 13950]
          Length = 1193

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 96/329 (29%), Gaps = 67/329 (20%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           EL    +  R + ++Y+ +      +  +      TP  V        L+P      E P
Sbjct: 173 ELTDTNLETRFLGDLYQEI----SEDAKKRYALRQTPVFVEEFILDRTLEP---ALNERP 225

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETHAV 254
                + DPTCG+G FL      + D                      +G +L P   A+
Sbjct: 226 LEGFKMIDPTCGSGHFLLGGFQRLLDRWHKQFPALDERERVQGALDSVYGVDLNPFAVAI 285

Query: 255 CVAGML---------------------IRRLESDPRRDLSKNIQQGSTLSKDL------- 286
               +                      +   +S       +  + GS  S D        
Sbjct: 286 ARFRLTVAALKASGLSNLEDAPAFKYHLAAGDSLLHGLDQREFELGSEFSIDQVAANFSY 345

Query: 287 -----------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                          ++   + NPP+ +  +   + + +       G +   +P      
Sbjct: 346 ATENFQALKIMLREGQYDCVVGNPPYIQVKDPGLNELYRNAYRHCRGTYALTVP------ 399

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             FL       +    G G    ++ ++ +   +   G+  + +++   D ++ IV L  
Sbjct: 400 --FLQRFFALAKSTAAGSGWVGQIVGNAFM---KQQFGKPLVEKYIPTRD-LKLIVNLAG 453

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQL 424
                    T + +  NR       +V L
Sbjct: 454 VPIPGHGTPTVILVGRNRNPTSDLVRVVL 482


>gi|209527886|ref|ZP_03276375.1| hypothetical protein AmaxDRAFT_5201 [Arthrospira maxima CS-328]
 gi|209491689|gb|EDZ92055.1| hypothetical protein AmaxDRAFT_5201 [Arthrospira maxima CS-328]
          Length = 1054

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 84/292 (28%), Gaps = 51/292 (17%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S+IYE  + +      +      TP  +V      +L  D   +         + DP C
Sbjct: 339 ISSIYEEFVDKGKKNADK--GVHYTPGHIVDFILDGVLPWDSGEWNLK------ILDPAC 390

Query: 215 GTGGFLTDAMNHV----ADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLIRR 263
           G+G FL  A   +         + +I              G ++  +   V    + +  
Sbjct: 391 GSGIFLVKAFQRLIYRWKKSYPNEEITAPILQQILTDNLVGVDINSQAVRVASFSLYLTM 450

Query: 264 LESDPRRDLSKNIQQ---GST--LSKDLFTGK-----------RFHYCLSNPPFGKKWEK 307
            +    R   + ++         +S D F              ++   + N P+GK    
Sbjct: 451 CDEIDPRYYWEQVRFPRLRDKRLISADFFQENVEGFRTVADAGQYDLVIGNAPWGKNTVT 510

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                +   K  +       +P  + G +        K       G   A++  +  L  
Sbjct: 511 Q--FAKSWAKTNKWP-----IPYGNIGPL-----FLPKSAALAKAGQPIAMLQPALALIF 558

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNIATYLWILSNRKTE 416
               S     R  L     ++ IV L      LF      T +  +S     
Sbjct: 559 -NQISTAKRFREKLFYEYKVDEIVNLSALRFGLFKDAISPTCIVTISAELPN 609


>gi|291547768|emb|CBL20876.1| N-6 DNA Methylase [Ruminococcus sp. SR1/5]
          Length = 937

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 86/316 (27%), Gaps = 76/316 (24%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           Y+    FSD    I      +  I  L    LL K  ++F   ++ P      +   ++E
Sbjct: 281 YVNGGLFSDETIEIPP---LTEEIKEL----LLTKASEDFDWSDISPT-----IFGAVFE 328

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKESPGMIR-------- 207
             +     E         T    +H     L           + K      +        
Sbjct: 329 STL---NPETRRSGGMHYTSISNIHKVIDPLFLDKLQTEFHEILKIQVQRTKVKRLDEFQ 385

Query: 208 ------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244
                 T  DP CG+G FLT+    +    +      +                    +G
Sbjct: 386 NKLALLTFLDPACGSGNFLTETYLSLRRLENEVIREKVGGQMTLGDVHNPIRVSIQQFYG 445

Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTLSKDLFT-- 288
            E+      V    + I                  D     +  NI +G+ L  D  +  
Sbjct: 446 IEINDFAVTVAKTALWIAESQMMEETKNIVYGFNDDFLPLKTYVNIAEGNALKIDWNSVV 505

Query: 289 -GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K   Y + NPPF       +   E             G   + +   +   +      
Sbjct: 506 LAKSLSYIMGNPPFVGARWMGEKQKEDVADI------FAGWKSVGNLDYVSCWYKKASDY 559

Query: 348 LPPNGGGRAAIVLSSS 363
           +  N   RAA+V ++S
Sbjct: 560 MKENINIRAALVSTNS 575


>gi|258542946|ref|YP_003188379.1| DNA helicase restriction enzyme type III R subunit [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256634024|dbj|BAH99999.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-01]
 gi|256640136|dbj|BAI06098.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-07]
 gi|256646248|dbj|BAI12196.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-26]
 gi|256652287|dbj|BAI18221.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-01-42C]
          Length = 1635

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160
               S   +++ +  D   ++ +  +A  L      + +  SGI+         V+  +Y+
Sbjct: 698  NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219
               +    ++ E      TP +VV      + D  +  F ++ G     + DP  GTG F
Sbjct: 753  GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265
            +T  +          +       H  E+    + +    +      L+            
Sbjct: 813  ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872

Query: 266  SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312
            +D  R    +   GSTL  +               + NPP+    E   D        A+
Sbjct: 873  TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932

Query: 313  EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++        R      +    S +                G    V ++  L    A  
Sbjct: 933  DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989

Query: 373  GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417
                +R+ L E      +  L  +              +F   +     + I+      +
Sbjct: 990  ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045

Query: 418  RRGKVQLINATDLWTSIRNEG 438
             +G++   +  D  T  +   
Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066


>gi|262040776|ref|ZP_06014005.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041861|gb|EEW42903.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 263

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 17/131 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y           ++    + +P  +  L   L +       K       TL +P
Sbjct: 111 DFLGALYME-----QELGADEMGQYFSPSSISRLMAGLFMPDAQETIKRE--GWMTLDEP 163

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+ G +      +AD G +            +++P    +    + +  +        
Sbjct: 164 ACGSAGMVIAFAYWMADAGYNPSEQLYAT--CTDIDPMVADMAFIQLSLLGI-------- 213

Query: 273 SKNIQQGSTLS 283
              +  G+TL+
Sbjct: 214 PAKVVTGNTLT 224


>gi|256637084|dbj|BAI03053.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-03]
          Length = 1630

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160
               S   +++ +  D   ++ +  +A  L      + +  SGI+         V+  +Y+
Sbjct: 698  NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219
               +    ++ E      TP +VV      + D  +  F ++ G     + DP  GTG F
Sbjct: 753  GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265
            +T  +          +       H  E+    + +    +      L+            
Sbjct: 813  ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872

Query: 266  SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312
            +D  R    +   GSTL  +               + NPP+    E   D        A+
Sbjct: 873  TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932

Query: 313  EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++        R      +    S +                G    V ++  L    A  
Sbjct: 933  DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989

Query: 373  GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417
                +R+ L E      +  L  +              +F   +     + I+      +
Sbjct: 990  ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045

Query: 418  RRGKVQLINATDLWTSIRNEG 438
             +G++   +  D  T  +   
Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066


>gi|148656659|ref|YP_001276864.1| hypothetical protein RoseRS_2538 [Roseiflexus sp. RS-1]
 gi|148568769|gb|ABQ90914.1| hypothetical protein RoseRS_2538 [Roseiflexus sp. RS-1]
          Length = 1243

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 50/200 (25%)

Query: 134 YKICKNFSGIELHPD--------TVPDRVMSNIYEHLIR--------------RFGSEVS 171
             +   F  +  + D         +    + ++YE L+                F +  +
Sbjct: 391 RDLLHAFRHLAWYGDPPRRINYAALDTEELGSVYESLLELHPTIAWRGAVPVVAFAARSA 450

Query: 172 EG--AEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR--------TLYDPTCGTGGFL 220
           E        TP ++V       L+P   A     P            T+ DP CG+G FL
Sbjct: 451 ERRATGSHYTPPELVAPLVQHALEPALRARLAPCPTPAEREAALLGLTVLDPACGSGHFL 510

Query: 221 TDAMNHVADCGSHHKIPP----------------ILVPHGQELEPETHAVCVAGMLIRRL 264
             A  H+    +  +                       +G +  P    +C   + +   
Sbjct: 511 LAAARHLGTELARIRSGDAAPAPEIVRDAVRDVIAHCLYGVDKNPLAVELCRVALWLEGH 570

Query: 265 -ESDPRRDLSKNIQQGSTLS 283
               P   L   I+ G +L 
Sbjct: 571 ARGRPLTFLDHRIRCGDSLL 590


>gi|309379554|emb|CBX21920.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 954

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 81/269 (30%), Gaps = 69/269 (25%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           YI    FS       ++F F++++ R         + +    I+     +   +   +++
Sbjct: 284 YINGKLFS----DGIDEFVFNASMRR--------TLLEC-CEIDW--SLISPDIFGTLFQ 328

Query: 161 HLIRRF-------GSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPG-------- 204
           +++           S          T  +++      L LD   A  +++ G        
Sbjct: 329 NIMENADAPGGGKKSAHRRELGAHYTSEKNIKRAIAPLFLDRLKAELEQAAGDPKKLARY 388

Query: 205 ----MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--------------PILVPHGQE 246
                   + DP CG G FL  A   +                         +   HG E
Sbjct: 389 ITRLQTLQILDPACGCGNFLIVAYREIRLLEMQAIRQLARIPGAQQMQSQCDVHQFHGIE 448

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDL---------SKNIQQGSTL---SKDLFTGKRFHY 294
           ++P    +    M +   + +                +I+  + L     D  + +   Y
Sbjct: 449 IDPAAVEIATVAMWLTDHQMNRLYQDGYKRIPLAHKADIRCANALQTDWADTISPQNLDY 508

Query: 295 CLSNPPF------GKKWEKDKDAVEKEHK 317
            + NPPF        + +KD + V    K
Sbjct: 509 IVGNPPFLGKKEQNAEQKKDMEKVVGHFK 537


>gi|256643193|dbj|BAI09148.1| DNA helicase restriction enzyme Type III R subunit [Acetobacter
            pasteurianus IFO 3283-22]
          Length = 1625

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 111/381 (29%), Gaps = 59/381 (15%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLL----YKICKNFSGIELHPDTVPDRVMSNIYE 160
               S   +++ +  D   ++ +  +A  L      + +  SGI+         V+  +Y+
Sbjct: 698  NPMSKAMQSVLDALD-KHSLHK--EADTLEAFYANVRERASGIDTAYGRQK--VIKELYD 752

Query: 161  HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGF 219
               +    ++ E      TP +VV      + D  +  F ++ G     + DP  GTG F
Sbjct: 753  GFFQTAFPKLKERLGIVYTPLEVVDFIIRSINDVLENEFGQTLGSKGVHIMDPFTGTGTF 812

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRR--------LE 265
            +T  +          +       H  E+    + +    +      L+            
Sbjct: 813  ITRLLQSGLITKEQLRHKYKQELHANEIVLLAYYIASINIEATFSDLMDGAYEPFEGICL 872

Query: 266  SDPRRDLSKNIQQGSTLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKD--------AV 312
            +D  R    +   GSTL  +               + NPP+    E   D        A+
Sbjct: 873  TDTFRLSEPHDLIGSTLEDNNKRIRKQKKLDIRVIMGNPPYSVGQESGNDNNQNVSYPAL 932

Query: 313  EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
            ++        R      +    S +                G    V ++  L    A  
Sbjct: 933  DERIAKTYAERSTATNKRALYDSYI---RAIRWASDRIGNCGVLGFVTNAGFLDANTANG 989

Query: 373  GESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEE 417
                +R+ L E      +  L  +              +F   +     + I+      +
Sbjct: 990  ----LRQCLAEEFSSIHVFHLRGNQRTSGETSRKEGGKIFDAGSRAPIAISIMVKNPDAK 1045

Query: 418  RRGKVQLINATDLWTSIRNEG 438
             +G++   +  D  T  +   
Sbjct: 1046 EQGRILFHDIGDYLTREQKLK 1066


>gi|84516120|ref|ZP_01003480.1| putative type II DNA modification enzyme [Loktanella vestfoldensis
           SKA53]
 gi|84509816|gb|EAQ06273.1| putative type II DNA modification enzyme [Loktanella vestfoldensis
           SKA53]
          Length = 1448

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 81/260 (31%), Gaps = 50/260 (19%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFS--GIELHPDTVPDR------VMSNIYEHLIR 164
            +FE    S+  A   +     K   + +    E  P T  +        + ++YE L+ 
Sbjct: 380 GLFEPEKLSNLTACKVENKRFLKAIWHIAWFRPEGQPMTKVNWRDMQTEELGSVYESLLE 439

Query: 165 ------------RFGS------EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-- 204
                        F           + +  + TP  +V L     LDP     +      
Sbjct: 440 LTPELNLEARDFTFAEGDATKGNARKVSGSYYTPDSLVKLLLDTTLDPVLDAAESRNPND 499

Query: 205 -----MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------------PHG 244
                +  ++ DP CG+G FL  A    A   + H++P  +                  G
Sbjct: 500 PAAELLKLSIIDPACGSGHFLLGAARRAAARIAQHRMPGAISKEVFQHALREVVSSCIFG 559

Query: 245 QELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
            +  P    +C   + I  LE   P   L   I+ G +L   +F  +     + +  +  
Sbjct: 560 SDRNPMAVELCKVALWIEALEPGKPLSFLDARIKCGDSLIG-IFDYEMLKAGIPDDAYSV 618

Query: 304 KWEKDKDAVEKEHKNGELGR 323
               DK   +   +  +  R
Sbjct: 619 MSGDDKAVAKAFERLNKDER 638


>gi|114326583|ref|YP_743742.1| type III restriction enzyme, res subunit [Nitrosomonas eutropha C91]
 gi|114309522|gb|ABI60764.1| type III restriction enzyme, res subunit [Nitrosomonas eutropha C91]
          Length = 1513

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/396 (13%), Positives = 99/396 (25%), Gaps = 74/396 (18%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS------NI 158
               S   + +            L+K        ++F           +           +
Sbjct: 643  NPMSQAMQQVLNQL----QEHHLDKE---RDTLEDFYESVKMRARDVNSAEGKQRIVVEL 695

Query: 159  YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTG 217
            Y+   R     ++E      TP +VV      +       F  S       + DP  GTG
Sbjct: 696  YDKFFRNAFPRMTERLGIVYTPVEVVDFILHSVEHVLKTEFNSSMADDNVHILDPFTGTG 755

Query: 218  GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM----------LIRRLESD 267
             F+T  +                  H  E+    + +    +           I   + +
Sbjct: 756  TFITRLLQSGIIPEERLPYKYQHEIHANEIVLLAYYIAAINIEATYHGILVGNIHGEQDN 815

Query: 268  PRRDLSKNIQQG--------STL----SKDLFT--------------GKRFHYCLSNPPF 301
                    I+           T      +D F                      L NPP+
Sbjct: 816  DLIVDKPYIEYQPFKGICLTDTFQMAEKEDQFDELLKKNSNRRKRQQNLDIRVILGNPPY 875

Query: 302  --GKKWEKDKDAVEKEHKNGELGRFGPGL---PKISDGSMLFLMHLANKLELPPNGGGRA 356
              G+K   D +A     K  E  R    +       +      +             G  
Sbjct: 876  SAGQKSANDNNANVDYPKLDERIRSTYTVRSQATNKNALYDSYIRAIRWSSDRIKDRGVI 935

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRT 401
              V ++  L    A  G+  +R+ L+E      I  L  +              +F   +
Sbjct: 936  GFVTNAGFL---EANVGDG-LRQCLVEEFSNLYIFHLRGNQRTSGERSRKEGGKIFGSGS 991

Query: 402  NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
                 + IL  +   + RG +   +  D  T  +  
Sbjct: 992  RAPIAISILVKKPEAKVRGNIYFHDIGDYLTREQKL 1027


>gi|227903228|ref|ZP_04021033.1| methylase [Lactobacillus acidophilus ATCC 4796]
 gi|227869033|gb|EEJ76454.1| methylase [Lactobacillus acidophilus ATCC 4796]
          Length = 637

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 65/251 (25%), Gaps = 60/251 (23%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L  +  + +  E     +   +   ++E  +     +         T  + +H     
Sbjct: 288 DELRDLLLSKASDEFDWSEISPTIFGAVFESTL---NPDTRRQGGMHYTSIENIHKVIDP 344

Query: 191 LLDPDDALFKESPGMIR-------------------TLYDPTCGTGGFLTDAMNHVADC- 230
           L   +          ++                   T +DP CG+G FLT+    +    
Sbjct: 345 LFLDELKDELNELKKVKQPAKLKKKASAFQDKLANLTFFDPACGSGNFLTETYLQLRRLE 404

Query: 231 -----------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
                                    I   +G E+     +V    + I   +        
Sbjct: 405 NDAIKLIYPNPSLDVGQAQDIIKVSIQQFYGIEINDFAVSVAKTALWIAESQMLEETKDI 464

Query: 274 K-------------NIQQGSTLSKDLF---TGKRFHYCLSNPPF----GKKWEKDKDAVE 313
                         NI +G+ L  D          HY + NPPF    G+   K+  + +
Sbjct: 465 FYADWDFLPLKTYTNIHEGNALRMDWNEVIPSYACHYIMGNPPFVSNTGRVSNKESHSKK 524

Query: 314 KEHKNGELGRF 324
                    RF
Sbjct: 525 MLTSEQSDERF 535


>gi|262042179|ref|ZP_06015352.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040501|gb|EEW41599.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 239

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 51/157 (32%), Gaps = 21/157 (13%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           +A  +  + + F  +    +      +  I+  L              + TP  V  L  
Sbjct: 61  EATDIANMQEMFCLMVCALEAKFHDFLGAIFMEL-----DLGDNFRGQYFTPYSVQCLMA 115

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--E 246
            +L+       +     I T+ DP CG  G L      + +      I P +   G   +
Sbjct: 116 RMLMPGVRDTIRRE--GIATVSDPACGAAGMLIAYAECLLE----ADINPSMHMFGSCID 169

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++P    +    + +  +        +  +  G+TL+
Sbjct: 170 IDPVAADMAFIQLSLLGI--------AAEVVTGNTLT 198


>gi|293370317|ref|ZP_06616874.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
 gi|292634612|gb|EFF53144.1| N-6 DNA Methylase [Bacteroides ovatus SD CMC 3f]
          Length = 1000

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 48/214 (22%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP +V      +L          SP     + D  CG G F    
Sbjct: 60  EYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            NH+ +             +G +++ +  AV                    +I++     
Sbjct: 107 -NHLPNL---------HNAYGFDIDGKAVAVAR------------YLYPEAHIEKCD--I 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  +  +RF   + NPPF  K+   K + E             G+        L ++   
Sbjct: 143 RQYYPEQRFDVVIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPVGI--------LMIIVPY 193

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           + ++       R A + + +  F G+     S  
Sbjct: 194 SFMQSEFWEKTRIAGI-NGNFSFVGQTKLAPSAF 226


>gi|291545599|emb|CBL18707.1| hypothetical protein CK1_03810 [Ruminococcus sp. SR1/5]
          Length = 1833

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 88/316 (27%), Gaps = 71/316 (22%)

Query: 117 DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTV--PDRVMSNIYEHLI-----R 164
           + +    +  LEK   L      +I   + G    P      +   +N Y  L       
Sbjct: 339 NMEAIHLLQTLEKEERLATPEEQEILSRYVGWGGIPQAFEESNSSWANEYLELKNTLSSE 398

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +  +     F T   V+     +L   ++   K+       + +P+CG G F+    
Sbjct: 399 EYSAARASTLNAFYTSPTVIRSMYEVL---ENMGLKQGN-----ILEPSCGVGNFMGLIP 450

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +               +G EL+P +  +               +   KN        +
Sbjct: 451 ESMGKAN----------MYGVELDPVSGRIAK-------------QLYQKNKIAVQGFEE 487

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             +    F   + N PFG     D+          +                        
Sbjct: 488 TSYPDSFFDCVIGNVPFGAYQVSDRRYDRHHFMIHDY--------------------FIA 527

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       GG  A+V SS  +           +R+++     +   + LP + F     T
Sbjct: 528 KSLDLVRPGGVVAVVTSSGTMDKQNP-----VVRQYIANRAELLGAIRLPNNAFQRNANT 582

Query: 402 NIATYLWILSNRKTEE 417
           ++ + +     R    
Sbjct: 583 SVVSDILFFQKRDRAS 598


>gi|189036158|gb|ACD75429.1| AMDV3_7 [uncultured virus]
          Length = 416

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 77/214 (35%), Gaps = 33/214 (15%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             M++         D    I Q + + K       +F   L+NPPFG K           
Sbjct: 1   MNMVLHG-------DGHGKIHQANGIDKTSGIEEGKFDLVLTNPPFGNKDSGKILEQ--- 50

Query: 316 HKNGELGRFGPGLPKIS--DGSM---LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                   F  G P+       +   LF+      L+     GG  AI+L    L N   
Sbjct: 51  --------FDLGAPQGKPIKEQLREILFIEKCLKFLKP----GGELAILLPDGILNNEHL 98

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQ-LINATD 429
                 +R ++ +  +I+A+++LP   F  +   +   +L  +K  ++  +   +  A  
Sbjct: 99  TY----VRDYIRKEAVIKAVISLPDRAFKASGANSKTSLLFLKKRLKKDEEQLPIFMAIA 154

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
            +     + K+ + I  +   +IL  Y   ++ K
Sbjct: 155 EFVGYETKTKEAKPIEHNDLPRILKTYREYKSSK 188


>gi|169342263|ref|ZP_02863343.1| N-6 DNA methylase [Clostridium perfringens C str. JGS1495]
 gi|169299644|gb|EDS81702.1| N-6 DNA methylase [Clostridium perfringens C str. JGS1495]
          Length = 494

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 69/246 (28%), Gaps = 50/246 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG           + D  
Sbjct: 23  REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S   I  I                   ++  +            I    +          
Sbjct: 67  SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+           +K  KN        GL    +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNCHEVNFIKENKKRLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S  F  +       +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKT 415
           L   K 
Sbjct: 215 LRKGKE 220


>gi|94267948|ref|ZP_01291043.1| hypothetical protein MldDRAFT_2387 [delta proteobacterium MLMS-1]
 gi|93451793|gb|EAT02548.1| hypothetical protein MldDRAFT_2387 [delta proteobacterium MLMS-1]
          Length = 204

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILVPHGQELEPETHAVCVAGMLIRRL 264
            L DP CGTGGFL  A +H+ +     +           G ++  E   +C   + +  L
Sbjct: 117 KLSDPACGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHGL 176


>gi|254361370|ref|ZP_04977512.1| possible type IV site-specific deoxyribonuclease, methyltransferase
           and restriction subunits [Mannheimia haemolytica PHL213]
 gi|153092871|gb|EDN73908.1| possible type IV site-specific deoxyribonuclease, methyltransferase
           and restriction subunits [Mannheimia haemolytica PHL213]
          Length = 1000

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 72/454 (15%), Positives = 140/454 (30%), Gaps = 91/454 (20%)

Query: 33  KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
             I     LR  E        ++ +                       YN+  + L  + 
Sbjct: 237 DYINSIIFLRVCEDRSIECYESLLDVTKLEKHKKFKTNLEKADKK---YNSGLFKLQYID 293

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDF--SSTIARLEKAGLLYKICKNFSGIELHPDTV 150
                      I S S N  +I ++  +  +S    +  + LL +I + F G EL  +  
Sbjct: 294 Q---------LINSTSSNLWSILKELYYPYNSYSFSVLPSDLLGRIYEQFLGDELVVNNN 344

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
                    E +++    + +   +   TP  ++       ++       +S        
Sbjct: 345 ---------ELILQP--KDYNLNRDIISTPNFIIRRIIDYTVNEYCKGKNDSNIYQSKFA 393

Query: 211 DPTCGTGGFLTDAMNHVADC------------------------GSHHKIPPILVPHGQE 246
           D  CG+G FL +    + D                             K   +    G +
Sbjct: 394 DIACGSGAFLLEVYQRLQDILVDYYIQNDKNKLEETGVNQYKLRFEDKKNLLLNCVWGVD 453

Query: 247 LEPETHAVCVAGMLIRRLESD----------PRRDLSKNIQQGSTLSK--DLFTGK---- 290
            +      C  G+L++ LE++             +L +NI  G++L    D  T K    
Sbjct: 454 KDFNAVKACRFGLLLKLLENESDVTIANKISILPNLDQNILWGNSLIDLSDKLTEKEKLK 513

Query: 291 ---------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                    +F+  + NPP+    E       +E K  +   F     K  D   LF+  
Sbjct: 514 VNPINLQEYKFNVIIGNPPY-LATEYMSSLYPEEFKIYKSKYFVAD--KQFDKYYLFIER 570

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTD-LFF 399
             N L      G     ++ S  +    A     ++RR++  +N+ +  +++  ++ LF 
Sbjct: 571 ALNLLNDNGLLG----YIIPSKFIKLSSAN----KLRRFIANKNNFLFKLISFGSNQLFK 622

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
             +  T + I            + L N    +  
Sbjct: 623 NKSTYTSIAIFKK----SLDNNILLYNNIRDYKK 652


>gi|27228570|ref|NP_758620.1| hypothetical protein pCAR1_p079 [Pseudomonas resinovorans]
 gi|219856992|ref|YP_002474024.1| hypothetical protein pCAR12_p079 [Pseudomonas sp. CA10]
 gi|26106158|dbj|BAC41598.1| hypothetical protein [Pseudomonas resinovorans]
 gi|219688920|dbj|BAH10011.1| hypothetical protein [Pseudomonas putida]
          Length = 279

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 29/170 (17%)

Query: 97  RNNLESYIASFSDNAK--AIFEDF---------DFSSTIARLEKAGLLYKICKNF----- 140
           R NL   + + S       +F DF         +      R E+      + K +     
Sbjct: 20  RKNLIRLLNANSHRHHLWDVFADFCEMGALAMSNSVDLAQRNEREKRYMSVIKKYEPSEV 79

Query: 141 -------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
                  + + +  +  PD V+  ++  L        +     F TP  V  L  + L  
Sbjct: 80  HRFPQMLAELTMAMEYGPDDVLGQVFGEL-----ELGNSSRGQFFTPYPVCKLMASQLFG 134

Query: 194 PDDALFKE-SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
               L K        T+ +P  G G  +      + D G +++    +  
Sbjct: 135 DGADLRKRLDERGFITVNEPASGAGAMVIAIAEALGDKGFNYQRCLHVTA 184


>gi|83646527|ref|YP_434962.1| type II restriction enzyme, methylase subunit [Hahella chejuensis
           KCTC 2396]
 gi|83634570|gb|ABC30537.1| Type II restriction enzyme, methylase subunit [Hahella chejuensis
           KCTC 2396]
          Length = 1414

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 55/172 (31%), Gaps = 38/172 (22%)

Query: 149 TVPDRVMSNIYEHLIR-----------RF----GSEVSEGAEDFMTP----RDVVHLATA 189
            +      ++YE L+            RF         +    + TP    ++++  A  
Sbjct: 438 DMDTTEFGSVYESLLELMPQINVNGVWRFCLIKSKGDKKELGTYYTPENLVQELIKSALK 497

Query: 190 LLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHV---------------ADCG 231
            +++        +P    +  T+ DP CG+G  L  A   +                   
Sbjct: 498 PVIENRLKNIGGNPSDKILSITICDPACGSGHCLIAAAKCLAAELVRYDTQSRNSELQHR 557

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282
              +       +G ++      +C   + +  +E   P   L  +I+ G++L
Sbjct: 558 IAMRKVIQKCIYGVDINNMAIELCKIALWLESVEPGKPLSFLDSHIKHGNSL 609


>gi|300778009|ref|ZP_07087867.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300503519|gb|EFK34659.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1811

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 91/321 (28%), Gaps = 67/321 (20%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  +                  ++     L++   ++  +               F TP
Sbjct: 49  ILNPVEHEIDINHWRKTEHDLFPITQELHQLLKENSTDEKQYRRYVDSMRSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
            +V++  ++          ++S   I    +P+ G G F+              +    +
Sbjct: 109 PEVINAISS--------TLRDSGVNIDKFLEPSAGIGSFVQSF----------AESETKV 150

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             + +++   T  +                    NI+              +    SN P
Sbjct: 151 TAYEKDI--LTGKILK------------HLYPESNIRVSGFEEIPEKEQNTYDVIASNIP 196

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG     D      +             P     +     +   K       GG  A + 
Sbjct: 197 FGDTSVFDLSYSRSKD------------PAKIQAARSIHNYFFLKGNDMLREGGLQAFIT 244

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           S   L +         IRR L+EN+ + + + LP +LF     T + + L IL     ++
Sbjct: 245 SQGILNSPNNEP----IRRALMENNNLVSAIRLPNNLFSDYAGTEVGSDLIILQKNTAKQ 300

Query: 418 RRGKVQLINATDLWTSIRNEG 438
                 L  A +L+      G
Sbjct: 301 S-----LTEAEELFCQSNKTG 316


>gi|227500575|ref|ZP_03930624.1| possible helicase [Anaerococcus tetradius ATCC 35098]
 gi|227217316|gb|EEI82653.1| possible helicase [Anaerococcus tetradius ATCC 35098]
          Length = 1511

 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/399 (14%), Positives = 122/399 (30%), Gaps = 72/399 (18%)

Query: 31  FGKVILPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
           + +  LPF+ L+ ++          L   R    +K L       +    ++    +   
Sbjct: 447 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNELIRTDRENIEG 506

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
            SE SL      N   NL       ++  A  + +  +  +  AR ++  +L K      
Sbjct: 507 ISEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGG 566

Query: 142 GIELHPDTVPDRVM---SNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             ++  +    + +   + + E+L    +          F TP+ V+             
Sbjct: 567 LSDVFDEEKEGQWLEARNFLKENLTGEEYNRARGSTLTAFYTPKVVIDAIYE-------- 618

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                      + +P+ GTG F+ +    + +             +G EL+  +  +   
Sbjct: 619 SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK- 667

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                          + NI Q     +  F+   F   + N PFG     +    ++E++
Sbjct: 668 -----------ELYPNANI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKVADREYE 710

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                            + L   +   K       GG  A +       +G       ++
Sbjct: 711 RN---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDV 750

Query: 378 RRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           RR++ E       + LP   F     T + + +  L  R
Sbjct: 751 RRYISERAEFLGAIRLPNRTFKGVAGTEVTSDIIFLKKR 789


>gi|288961216|ref|YP_003451555.1| adenine specific DNA methyltransferase [Azospirillum sp. B510]
 gi|288913524|dbj|BAI75011.1| adenine specific DNA methyltransferase [Azospirillum sp. B510]
          Length = 1139

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 17/128 (13%)

Query: 145 LHPDTVPDRVMS----NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
             P               YE  +  F  E+ +    + TP +VV      +         
Sbjct: 313 DRPAFFSAFDAGQAVQYFYEPFLAAFDPELRKDLGVWYTPPEVVTYMVERVDRVLRGELG 372

Query: 201 ESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------KIPPILVPHGQEL 247
              G       + DP CGTG F+   ++ +    +            K        G E+
Sbjct: 373 VKAGLADPRVHVLDPCCGTGSFVIAVLDKIRRNLAEGGAGALTALRLKEAATERVFGFEI 432

Query: 248 EPETHAVC 255
            P    + 
Sbjct: 433 MPAPFVIA 440


>gi|261209214|ref|ZP_05923606.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566131|ref|ZP_06446566.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|294614183|ref|ZP_06694103.1| adenine-specific methyltransferase [Enterococcus faecium E1636]
 gi|260076760|gb|EEW64495.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162076|gb|EFD09941.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291592959|gb|EFF24548.1| adenine-specific methyltransferase [Enterococcus faecium E1636]
          Length = 335

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 110/341 (32%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E    +  + +  + +   P+         + 
Sbjct: 27  SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELNKLSFEPEEWR-----RLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 82  QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 136

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 137 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 179

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278

Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435
           +LF        + IL  +  + ++  +V L+    L    +
Sbjct: 279 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 319


>gi|168207928|ref|ZP_02633933.1| N-6 DNA methylase [Clostridium perfringens E str. JGS1987]
 gi|170660774|gb|EDT13457.1| N-6 DNA methylase [Clostridium perfringens E str. JGS1987]
          Length = 494

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 69/246 (28%), Gaps = 50/246 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG           + D  
Sbjct: 23  REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S   I  I                   ++  +            I    +          
Sbjct: 67  SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+           +K  KN        GL    +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNCHEVNFIKENKKRLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S  F  +       +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKT 415
           L   K 
Sbjct: 215 LRKGKE 220


>gi|219849464|ref|YP_002463897.1| hypothetical protein Cagg_2592 [Chloroflexus aggregans DSM 9485]
 gi|219543723|gb|ACL25461.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 1339

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 58/256 (22%)

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI 136
           G+  +++       L + +    L            A+F +  F     RL    +L  +
Sbjct: 323 GFDLWHSLRALWYALRTEDIAPAL-----GLPPLNGALFAELPFDGQ--RLPNTTVL-AV 374

Query: 137 CKNFSGIELHPDTV---------PDRVMSNIYEHLIRR--------------FGSEVS-E 172
               +     P                + ++YE L+                F +    +
Sbjct: 375 INALTWYRPTPADRPRRVNYASLDTEELGSVYESLLDYHPQLDDNGQCLSFTFTTGSERK 434

Query: 173 GAEDFMTPRDVVHLATALLLDP-DDALFKESPGMIR--------TLYDPTCGTGGFLTDA 223
               + TP ++V       L P  +   + +              + DP CG+G FL  A
Sbjct: 435 TTGSYYTPPELVQELVDRTLVPLINDRLRTASTPAAQRAAILDLRILDPACGSGHFLLAA 494

Query: 224 MNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE-S 266
              +                 +     +       +G +  P    +    + I   +  
Sbjct: 495 ARILGRAVARLDAKGHEPSPDEVRRAIREVIAHCIYGVDANPLAVELARVALWIEAHDGG 554

Query: 267 DPRRDLSKNIQQGSTL 282
            P   L   I+ G +L
Sbjct: 555 KPLTFLDHRIRCGDSL 570


>gi|146318348|ref|YP_001198060.1| HsdM [Streptococcus suis 05ZYH33]
 gi|146320543|ref|YP_001200254.1| HsdM [Streptococcus suis 98HAH33]
 gi|145689154|gb|ABP89660.1| putative HsdM [Streptococcus suis 05ZYH33]
 gi|145691349|gb|ABP91854.1| putative HsdM [Streptococcus suis 98HAH33]
 gi|319757928|gb|ADV69870.1| putative HsdM [Streptococcus suis JS14]
          Length = 328

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 34/232 (14%)

Query: 27  KHTDFGKVILPFTLL-RRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85
           +  ++   +L  + L + L          V  +Y   G  ++  E +          T+ 
Sbjct: 39  EAGEYK--LLTQSFLYKFLNDKFLYEALIVDNRYDYQGLLDLSEEDYDWFLDDIGTKTAH 96

Query: 86  YSLSTLGST-NTRNNLESYIASFSDNAKAI-----------------FEDFDFSSTIARL 127
                L  + + + N   +   F      I                    FD       +
Sbjct: 97  LKPEQLIESLHRQQNQADFAEIFEQTLNQIAIDNNAIFSVHTDGGTDIRLFDQRLITDTI 156

Query: 128 EK----AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
                   +   I    + ++             S ++E++I+ +  +      ++ TP 
Sbjct: 157 SDASKRNEVAASIINLLARVKFDQQIFSQGFDFFSTLFEYMIKDYNKDGGGKYAEYYTPH 216

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
            V  +  A+L+  D             +YDP+ G+G  L +  + + D    
Sbjct: 217 SVAKIIAAILVGNDQ-------PSNVKIYDPSAGSGTLLMNLASQIGDESGQ 261


>gi|149174417|ref|ZP_01853043.1| type II adenine specific methyltransferase [Planctomyces maris DSM
           8797]
 gi|148846527|gb|EDL60864.1| type II adenine specific methyltransferase [Planctomyces maris DSM
           8797]
          Length = 549

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/209 (18%), Positives = 62/209 (29%), Gaps = 39/209 (18%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV-HLATALLLDPDDALFKESPGM 205
                   + + Y+  +             + T   ++      L    D          
Sbjct: 93  EKEFDGDQIGDQYQASLSNTYRN---QEGIYYTQDWIIERFFAHL--PEDREGL------ 141

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
             T  DP CG+G F+  A+          +        G +++P   A+    +      
Sbjct: 142 --TFCDPCCGSGNFILAALE---------QGFTAENIFGFDIDPVAVAITRRRLF----- 185

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +     S NIQ    L   L  G+  F    +NPP+GKK  K +       K      F
Sbjct: 186 -ERTGFDSPNIQCADFLETSLQAGQPPFDVIFTNPPWGKKLNKAQ-------KQSYAVPF 237

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGG 353
             G     D   LF     ++L+     G
Sbjct: 238 AAG--NSRDTCSLFFHAALSRLQPTGYLG 264


>gi|332829925|gb|EGK02553.1| hypothetical protein HMPREF9455_00803 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1888

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 74/468 (15%), Positives = 139/468 (29%), Gaps = 76/468 (16%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R   S  +     F TP+ ++                 S    +   +P+ G G F+   
Sbjct: 92  RYVSSLKNSVLTAFYTPKPIIDALA--------LALNNSGIKPQRFLEPSAGAGAFIASF 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              V D                             +L  ++ S    +    I+    + 
Sbjct: 144 KETVPDAEVTGFEK--------------------DLLTGKILSHLHPEDKIRIEGYEKM- 182

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +    + +    SN PFG     D    + E            +P +S  +     +  
Sbjct: 183 -EGRYAQHYDVIASNIPFGDVAVFDPLLSKHE------------IPAVSQSTKAIHNYFF 229

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---R 400
            K  +    GG  A + S   L + +       IR +L+    + + + LP +LF     
Sbjct: 230 TKSVMAAREGGLIAFITSQGVLNSEQN----KPIREYLMNTCQVVSAIRLPNNLFTEEAG 285

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK---RRIINDDQRRQILDIYV 457
           T + + L IL  +        +        +   R          +  D  R    D+ V
Sbjct: 286 TEVGSDLIILQRKNA-----NILPTQRQQDFIESRKLSNGISVNNLFKDFDRVIQTDVKV 340

Query: 458 SRENGKFSRMLDYRTFGYRRI--KVLRPLRMSFI--LDKTGLARLEADITWRK--LSPLH 511
             +      M    T G   I   + R L   F   LD             ++  ++P+ 
Sbjct: 341 GTDPYGKPAMEFTHTGGTEAIAATLYRMLNEDFSKHLDLEHYLSHAPQKQEQQPIVAPIQ 400

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFIN-AFGRKDPR 570
           +    D+++   +  Y     +  +         +    + S+  I   +     +   +
Sbjct: 401 EISVSDMVELSSKSAYEPIEEDLVLFHPFAEARNRKAWTELSEQEIKEVMESRINQPKEQ 460

Query: 571 ADPV---TDVNGEWIPD--TNLTEYENVPYLESIQDYFVREVSPHVPD 613
           A  V    +     I D  + L  + N+   E I+    +EVSP  PD
Sbjct: 461 AKNVPTTAEKKDTIIKDEASGL--FVNINTGEVIE---QKEVSP--PD 501


>gi|329940588|ref|ZP_08289869.1| Adenine specific DNA methyltransferase [Streptomyces
           griseoaurantiacus M045]
 gi|329300649|gb|EGG44546.1| Adenine specific DNA methyltransferase [Streptomyces
           griseoaurantiacus M045]
          Length = 1125

 Score = 51.9 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/363 (12%), Positives = 92/363 (25%), Gaps = 76/363 (20%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHP-DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
              +  L   G++  +    S ++             ++YE  +  +  E+      + T
Sbjct: 289 DDALDDL--RGIIDPLIDVLSAVDPEMFKDETGDAYLHLYEGFLGAYDPELRRRTGTYYT 346

Query: 180 PRDVVHLATALLLDPDDALFKESPGMI---RTLYDPTCGTGGFLTDAMNHVAD------- 229
             +VV        +       +  G      T+ DP  GTG FL + ++HVA        
Sbjct: 347 AGEVVRFMVGFTDEVLRDRLGQEDGYGSEDVTVVDPAMGTGTFLINIIDHVAKSLSLKYG 406

Query: 230 --CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL---ESDPRRDLSKNIQQGSTLSK 284
               S           G E +   +AV    + +                 +    TL  
Sbjct: 407 STLKSGLLRELSGRLVGLEKQTGPYAVA--ELRVHHAFRSHDADITRRPPRLLVADTLDD 464

Query: 285 DL----------------------FTGKRFHYCLSNPPF-------------GKKWEKDK 309
                                      ++    + NPP+              +     +
Sbjct: 465 PAVEHHLGFMYEAIARHRRMANKIKADEKVMVVIGNPPYLRGARQSGVGRWITEGNPNGQ 524

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG------GRAAIVLSSS 363
             +       + GR G  L   +     +        +     G      G  A++ +S 
Sbjct: 525 GPILARFHPEDNGRVGYAL--DNLYVYFWAWSTWKVFDQLTASGAPKAPSGIVALITNSG 582

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTD--------LFFRTNIATYLWILSNRK 414
            L +  +      +R    +      ++ L P          +F        + +     
Sbjct: 583 YLDSEGSAGMRHYLREA-ADEGW---VIGLSPEGAYSDTRTRVFQDVKREICIAVFVRHG 638

Query: 415 TEE 417
             +
Sbjct: 639 APD 641


>gi|182435394|ref|YP_001823113.1| hypothetical protein SGR_1601 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463910|dbj|BAG18430.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 1213

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/456 (14%), Positives = 126/456 (27%), Gaps = 93/456 (20%)

Query: 35  ILPFTLLRRLECAL-----------EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           +L    +R  E              +  R     ++  +  ++ D   +      +F   
Sbjct: 69  VLGTVFVRFCEDNRLIPEPYLTAPEDDRRDLALARFEDYVSTSDDPT-YRGWLETAFEEL 127

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                  L      N L   I    D+A+ +    DF     R E+  L++         
Sbjct: 128 GAGQAGRLLFDKKHNPLFQ-IPLSHDSARDLV---DFWRA--RDEEGVLVHDFTDPLEED 181

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                    R + ++Y+ L         +      TP  V        + P    F    
Sbjct: 182 GDGTKGWDTRFLGDLYQDL----SEAARKTYALLQTPEFVEEFILDRTMTPAVREFG--- 234

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETHAV 254
                + DPTCG+G F+  A   +    +  +    +           HG +L P   A+
Sbjct: 235 YEGLKMIDPTCGSGHFVLGAFRRLVRLWADGQPGRDVHERVAAALDSVHGVDLNPFAVAI 294

Query: 255 CVAGML--------IRRLESDPRRDLSKNIQQGSTLSK---------DLFTGK------- 290
               +L        +R L      +   ++  G +L K         D    +       
Sbjct: 295 ARFRLLVAAMAASGVRTLGDAAGYEWPIHLAVGDSLIKHRHKQGNLFDGLEEEGADELAE 354

Query: 291 ------------------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                             R+H  + NPP+    +K  + + +   +   G++   +P   
Sbjct: 355 FKYETEDVHEHPEILRQGRYHVVVGNPPYITVKDKRLNELYRGLYDACAGKYALSVP--- 411

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI-- 390
                F + L         G G    + ++S +          E    L+E      I  
Sbjct: 412 FAQRFFELALIGH-AESGRGYGMVGQITANSFMKR--------EFGTRLIETHFAHEIEL 462

Query: 391 ---VALPTDLFFRTNIATYLWILSNRKTEERRGKVQ 423
              +             T + +  +R   +R   + 
Sbjct: 463 TEVIDCSGAYIPGHGTPTVILVGRHRSGSQRSDTIL 498


>gi|319938318|ref|ZP_08012715.1| hypothetical protein HMPREF9488_03551 [Coprobacillus sp. 29_1]
 gi|319806611|gb|EFW03269.1| hypothetical protein HMPREF9488_03551 [Coprobacillus sp. 29_1]
          Length = 1397

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 104/373 (27%), Gaps = 74/373 (19%)

Query: 90   TLGSTNTRNNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKIC------KNFS 141
             + + N      S    F++N +AI   +  +  +  A  ++  +L K        + F 
Sbjct: 811  KITNDNLGE--GSPREKFNNNVEAIRVLKKCEEENRFATPQEQEILSKYVGWGGLPQAFD 868

Query: 142  GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
              +         + + + E   + +          F TP  V+               + 
Sbjct: 869  EKDSSWSNEYSILKNLLDE---KEYSQARGSTLTAFYTPPVVIRSMYK--------ALEN 917

Query: 202  SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                   + +P+CG G F+    + + D             +G EL+  +  +     L 
Sbjct: 918  MGLKTGNILEPSCGVGNFIGMLPDSLED----------CKLYGVELDSISGRIARQ--LY 965

Query: 262  RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            ++     +     N+               F   + N PFG     DK   + +    + 
Sbjct: 966  QKSTVAVQGYEDTNL-----------PNSFFDVSVGNVPFGDFKVLDKKYDKHKFLIHDY 1014

Query: 322  GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                                   K       GG  A + S   L           +R+++
Sbjct: 1015 --------------------FFAKTLDKVRPGGVIAFITSKGTLDKENPS-----VRKYI 1049

Query: 382  LENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
             +   +   + LP + F           I+  +K +        I    ++    + G K
Sbjct: 1050 AQRADLLGAIRLPNNTFKANAGTEVTSDIIFLQKRDSITD----IEPDWVYLGENDYGIK 1105

Query: 441  RRIINDDQRRQIL 453
                  D    IL
Sbjct: 1106 MNQYFIDNPEMIL 1118


>gi|295425499|ref|ZP_06818192.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064838|gb|EFG55753.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Lactobacillus amylolyticus DSM 11664]
          Length = 334

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 87/292 (29%), Gaps = 45/292 (15%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRD---VVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           I+ +L  +  ++    +    TP     V+ L    LL  D  L          + DP  
Sbjct: 77  IFNYLTLKAINDDGRNSNQMPTPPALATVIALLMQRLLPADQQL---------EVVDPAL 127

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           GTG  L   +N +        +  +      E   +   +                +L  
Sbjct: 128 GTGSLLYSVINQLKTENHSKNLYQLAGIDNDEQMLDFADIAA-----------HLNELKI 176

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           ++     +    +  +     +S+ P G  +  D +A   E KN +           S  
Sbjct: 177 DLYCQDAMMP--WMTEPADAIVSDLPIGY-YPLDNNAEHFELKNKKGH---------SYA 224

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             LF+  +   L+     GG A +++ +  L              WL +   + AI+ LP
Sbjct: 225 HFLFVEQIVKNLK----AGGFAFLLVPTGMLQGKDRNQFMP----WLTKKVFLNAIIDLP 276

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444
            D+F        + +  N     +   V L     L           K    
Sbjct: 277 DDMFRNKFNQKSILVFQNHGDNAKAKDVLLTKLDSLKKEDSLIAFNIKLNEW 328


>gi|212705064|ref|ZP_03313192.1| hypothetical protein DESPIG_03133 [Desulfovibrio piger ATCC 29098]
 gi|212671508|gb|EEB31991.1| hypothetical protein DESPIG_03133 [Desulfovibrio piger ATCC 29098]
          Length = 199

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 21/133 (15%)

Query: 138 KNFSGIE----LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            +F+        +  T  +  +  +YE          +     + TP  V  L   +   
Sbjct: 7   DHFANATAYLLDYMRTTNEETLGPLYEEY------AANHYTGQYFTPSSVARLMARIT-- 58

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253
                          + DP CG G  L  A           +     +  GQ+++     
Sbjct: 59  ----HTAPPETGRFKVLDPACGAGACLIAAAK-----EQTFEQNGRALFVGQDIDLNCAR 109

Query: 254 VCVAGMLIRRLES 266
           +    ++   L+ 
Sbjct: 110 MTALNLMFFNLDG 122


>gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
            13032]
 gi|41223062|emb|CAF19007.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum
            ATCC 13032]
          Length = 1646

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 69/287 (24%), Gaps = 40/287 (13%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                  + +S   +LEK    Y         E+        V+ ++YE   ++   + SE
Sbjct: 813  DALNSAELNSETEKLEK---FYDSV-RIRAAEVSSAAGKQAVIKDLYERFFKKAFKKQSE 868

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V        D     F          + DP  GTG F+   +       
Sbjct: 869  ALGIVYTPVEIVDFILRAADDVSKKHFGRGLSDKDVHVLDPFTGTGTFMVRLLQSGLIKP 928

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM-----------LIRRLESDPRRDLSKNIQQGS 280
                       H  E+    + V    +            +R  E  P  +    I  G 
Sbjct: 929  EDLARKYANELHATEIMLLAYYVAAVNIETTYFGLEGERALRNGEDAPVYEPFDGIVLGD 988

Query: 281  TLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKD-----AVEKEH 316
            T       D      F                  + NPP+        D           
Sbjct: 989  TFQMYEDDDKLDLDVFTANNDRMERQRLTPVQVIVGNPPYSVGQSSANDNNANLKYPTLD 1048

Query: 317  KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            +  E            +      +          +  G  A V ++ 
Sbjct: 1049 RRIEDSYAKYSTATNKNSLYDSYLRAFRWATDRIHTQGVVAFVSNNG 1095


>gi|110798617|ref|YP_697278.1| N-6 DNA methylase [Clostridium perfringens ATCC 13124]
 gi|110673264|gb|ABG82251.1| N-6 DNA methylase [Clostridium perfringens ATCC 13124]
          Length = 494

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 64/326 (19%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG           + D  
Sbjct: 23  REIGYYSTPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S   I  I                   ++  +            I    +          
Sbjct: 67  SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+           ++  KN        GL    +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S  F  +       +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLD 469
           L   K  E + K+ + N        +      +   ++    + +I +  +        D
Sbjct: 215 LRKGK--EYQEKIVVNNRPKSIEEFKELLNGIKDNGNESLYSLQEIVLQNKK-------D 265

Query: 470 YRTFGYRRIKVLRPLRMSFILDKTGL 495
              F      +  P  +  + +   L
Sbjct: 266 NLEFL-----IECPEDIRSLFNNIRL 286


>gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21325842|dbj|BAC00463.1| Restriction enzymes type I helicase subunits and related helicases
            [Corynebacterium glutamicum ATCC 13032]
          Length = 1643

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 69/287 (24%), Gaps = 40/287 (13%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                  + +S   +LEK    Y         E+        V+ ++YE   ++   + SE
Sbjct: 810  DALNSAELNSETEKLEK---FYDSV-RIRAAEVSSAAGKQAVIKDLYERFFKKAFKKQSE 865

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V        D     F          + DP  GTG F+   +       
Sbjct: 866  ALGIVYTPVEIVDFILRAADDVSKKHFGRGLSDKDVHVLDPFTGTGTFMVRLLQSGLIKP 925

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM-----------LIRRLESDPRRDLSKNIQQGS 280
                       H  E+    + V    +            +R  E  P  +    I  G 
Sbjct: 926  EDLARKYANELHATEIMLLAYYVAAVNIETTYFGLEGERALRNGEDAPVYEPFDGIVLGD 985

Query: 281  TLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKD-----AVEKEH 316
            T       D      F                  + NPP+        D           
Sbjct: 986  TFQMYEDDDKLDLDVFTANNDRMERQRLTPVQVIVGNPPYSVGQSSANDNNANLKYPTLD 1045

Query: 317  KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            +  E            +      +          +  G  A V ++ 
Sbjct: 1046 RRIEDSYAKYSTATNKNSLYDSYLRAFRWATDRIHTQGVVAFVSNNG 1092


>gi|16081850|ref|NP_394245.1| hypothetical protein Ta0783 [Thermoplasma acidophilum DSM 1728]
 gi|10640062|emb|CAC11914.1| hypothetical protein [Thermoplasma acidophilum]
          Length = 437

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 98/300 (32%), Gaps = 33/300 (11%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               TP +V H     ++        +         D  CG G  +   ++++       
Sbjct: 3   GMHFTPVEVFH---RYIMPQIRDHLND-----YLWVDMFCGEGNLILPMLDYIDR--DRR 52

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFH 293
                      +++       +   +   +  +  R   +NI+   TL    + +G+   
Sbjct: 53  GEFFRDHIMCFDIDESAVERSIENAMKYGIPQEMAR---RNIRTRDTLMDYPVLSGRYPV 109

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           + ++NPP+       K    + H+    G         +DG           +    +G 
Sbjct: 110 FHITNPPYLYLGYIRKRKDARRHQEYFEG--------QNDGYQDLYQ--IAMMNDLRHGI 159

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G    ++ S+  F+    +G  +IR   L+   I +       +F  T   T + ILS +
Sbjct: 160 GNMIYIIPSNFFFS---DAGTRKIREDFLKIYRIGSCYIFERRIFPSTG--TNVMILSFQ 214

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
           +++     ++     D     ++E KKR ++  +   +  + Y       F        F
Sbjct: 215 RSQSPVESIEF----DAIRINKHEEKKRYVLRSENNFKPDNEYQDYIRAHFRPDHPVVKF 270


>gi|240948005|ref|ZP_04752423.1| N-6 DNA methylase [Actinobacillus minor NM305]
 gi|240297675|gb|EER48149.1| N-6 DNA methylase [Actinobacillus minor NM305]
          Length = 581

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 95/256 (37%), Gaps = 29/256 (11%)

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F K +  +   ++    + +  RF     K ++     + HL  ++         A +++
Sbjct: 206 FSKGFLAEPWGMKVNINDQDNQRFSV---KSNNLQNYLIQHLFQQVNDF------AIVIM 256

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
             + L +      E  +R+WLLE   ++A+++LP+ L   T   + L I       E   
Sbjct: 257 PINGLHSSV--QSEELMRQWLLEQGYLKAVISLPSGLSISTMTNSALLIFDFSTKYETVN 314

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
            + L ++   +   RN   K   +      +++DI  S    K S+ +D ++       +
Sbjct: 315 FISLKDS--EFVEKRNRETKLTQL-----DKLIDIIDSNLAHKSSKKVDVKSILNNSYIL 367

Query: 481 --LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP---------MMQQIYPY 529
              R +  +   D   + +         L  +++   +  LK              I  +
Sbjct: 368 NPERYVLDNSTQDALNILQEYETKKLGDLVDIYRPIPVSKLKSDGSEMFFEIQGGDIPEF 427

Query: 530 GWAESFVKESIKSNEA 545
           G+ ++  KE+   NE 
Sbjct: 428 GYIDTASKENYIDNEL 443


>gi|89070229|ref|ZP_01157553.1| hypothetical protein OG2516_07168 [Oceanicola granulosus HTCC2516]
 gi|89044149|gb|EAR50307.1| hypothetical protein OG2516_07168 [Oceanicola granulosus HTCC2516]
          Length = 1024

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 69/238 (28%), Gaps = 32/238 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGT 216
           IYE   + +  + ++      TP ++V           +  F K        + DP  GT
Sbjct: 287 IYEGFYQSYNPDAADRLGVVYTPNEIVRFMVRATDWLCERHFGKRLADQGVEILDPATGT 346

Query: 217 GGFLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           G F+ + + H+  +  +  +       H  E+    + V    +         +     N
Sbjct: 347 GTFVCELIEHMRGEPRAVLERKYREELHANEVAILPYYVANLNIEATYAGITGQIAEYPN 406

Query: 276 IQQGSTLSKD---------------LFTGK-----------RFHYCLSNPPFGKKWEKDK 309
           +    TL                   FT +           +    + NPP+    + + 
Sbjct: 407 LCFVDTLDNVGGLGIRRGQQMSFLGQFTDENTERVQAQNRRKISVVIGNPPYNANQQNEN 466

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE----LPPNGGGRAAIVLSSS 363
           D  +         R      K+S      +  + ++            G  A V +SS
Sbjct: 467 DNNKNREYPRIDERVRNTFVKLSTAQKTKVYDMYSRFYRWAFDRIADEGIVAFVTNSS 524


>gi|292656402|ref|YP_003536299.1| N-6 adenine-specific DNA methylase domain-containing protein
           [Haloferax volcanii DS2]
 gi|291371511|gb|ADE03738.1| N-6 adenine-specific DNA methylase domain protein [Haloferax
           volcanii DS2]
          Length = 853

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 80/247 (32%), Gaps = 52/247 (21%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP+ +  + T   +  ++           ++ D   G+G  L  A  ++          
Sbjct: 127 YTPQAIAEILTGWAITSEND----------SVLDFATGSGTLLKQAATYL---------D 167

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------KNIQQGSTLSKDLFTGK 290
                 G E+ P    +  +   +R +++    +         + ++ G   ++   + +
Sbjct: 168 KEGRLTGVEIHPFIAKLVKSR--VRGIDNAEIFNEDFFDWRTPEQLELGEE-TQGEHSSE 224

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   + NPP       ++     E   G                  F+      L+   
Sbjct: 225 KYDAVVGNPPITGFLPPEQREKISEWTQGRRPSLAA----------AFVAKAVTHLKD-- 272

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
             GGR A VL    L +G        +   L E+  I  IV LP  +F     +  L +L
Sbjct: 273 --GGRGAFVLPKKALKDG--------LLEQLTESCSIHRIVELPLGVFADA-HSVELVVL 321

Query: 411 SNRKTEE 417
           +  K E 
Sbjct: 322 TMVKEER 328


>gi|168209831|ref|ZP_02635456.1| N-6 DNA methylase [Clostridium perfringens B str. ATCC 3626]
 gi|168214951|ref|ZP_02640576.1| N-6 DNA methylase [Clostridium perfringens CPE str. F4969]
 gi|170712110|gb|EDT24292.1| N-6 DNA methylase [Clostridium perfringens B str. ATCC 3626]
 gi|170713626|gb|EDT25808.1| N-6 DNA methylase [Clostridium perfringens CPE str. F4969]
          Length = 494

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 70/246 (28%), Gaps = 50/246 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G  +TL+DP CG           + D  
Sbjct: 23  REIGYYSTPPFVARYIGKRIID--------INGKGKTLFDPCCG--------KEELTDYF 66

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S   I  I                   ++  +            I    +          
Sbjct: 67  SDLGIKTIG----------------MDLIKYKNNYRCEFKKGNFINYYCSQKNTKTWD-- 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+           ++  KN        GL    +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S  F  +       +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKT 415
           L   K 
Sbjct: 215 LRKGKE 220


>gi|193214780|ref|YP_001995979.1| BseRI endonuclease, putative [Chloroherpeton thalassium ATCC 35110]
 gi|193088257|gb|ACF13532.1| BseRI endonuclease, putative [Chloroherpeton thalassium ATCC 35110]
          Length = 1067

 Score = 51.9 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 20/235 (8%)

Query: 98  NNLESYIASFSDNAKAIFE--DFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDR 153
           N L++ +   + +   I    + DF   IA       L  + ++ +    +     V + 
Sbjct: 267 NALQTVLNGKAFHEHNILRFVEDDFFHWIATDTHFSALKSMFRDITEKLADYDFSDVRED 326

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++  +Y+ LI     E      ++ TP  +  L    L   +D+             DP 
Sbjct: 327 ILKGVYQELID---IETRHALGEYYTPDWLCELVLEDLPIREDSKI----------LDPA 373

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPP-ILVPHGQELEPETHAVCVAGMLIRRLESD--PRR 270
           CG+G FL  A+  + +   H           G ++ P +  +    +L+   +S     +
Sbjct: 374 CGSGSFLRAAVQRLRNQFPHLSADQLTAQVQGIDVHPLSVQIAKTTLLVSLGKSIRKAGK 433

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
            ++ N+   +TL     T + F          +K++  KD  EK        RF 
Sbjct: 434 PVALNVFLANTLLLPEGTTELFGQNYHVMVDSRKYKLMKDVFEKHSLFDSAVRFS 488


>gi|168822802|ref|ZP_02834802.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205340865|gb|EDZ27629.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320089261|emb|CBY99014.1| hypothetical protein SENTW_5581 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 277

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 21/148 (14%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
           + FS +    +      +  I+  L              + TP  V  L   LL+     
Sbjct: 108 EMFSLMVCALEAKFHDFLGAIFMEL-----ELGDNFRGQYFTPYSVQCLMARLLMPGIQD 162

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ--ELEPETHAVC 255
             +     I T+ DP  G  G L      + +      I P     G   +++P    + 
Sbjct: 163 TIRRE--GIVTVSDPASGAAGMLIAYAECLLE----ADINPSWHMFGSCIDIDPVAADMA 216

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + +  +        +  +  G+TL+
Sbjct: 217 FIQLSLLGI--------AAEVVTGNTLT 236


>gi|234331|gb|AAC60387.1| methyltransferase [Acinetobacter calcoaceticus]
          Length = 540

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 60/303 (19%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E  +    F TP  + +     +L             ++T+ +P  G G         + 
Sbjct: 24  EHRKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLG----VFSRAIL 70

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                  I       G E++                        + NI     +  D   
Sbjct: 71  SQQKEINIK------GFEVDETIFENAK---------EYFDDFENVNILLQDYMYND--W 113

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             ++   + NPP+ K  + D   + KE +          L   ++   LFL+   ++L  
Sbjct: 114 KNKYDGIICNPPYFKFHDYDNKNILKEIETN----LKCKLNGFTNLYTLFLLKSIHQL-- 167

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIATY 406
             +  GR A ++ S  L +         ++ +L+++  +  I+ +    ++F        
Sbjct: 168 --SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTAS 221

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + + +N   +    KVQ  N   L    +               +I++ Y +    + + 
Sbjct: 222 IILCAN---DNITDKVQFNNIQSLQDLSK-------------IDEIINKYPNFLETEQTY 265

Query: 467 MLD 469
              
Sbjct: 266 NFS 268


>gi|300777361|ref|ZP_07087219.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300502871|gb|EFK34011.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1815

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 96/314 (30%), Gaps = 66/314 (21%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  +                  ++     L++    +  +               F TP
Sbjct: 49  VLNPVENEIDINHWRKTEHDLFPLTQELHQLLKENSEDDKQYRKYVDSLKSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V+   ++ L D            I    +P+ G G F+     +     + ++   + 
Sbjct: 109 PKVIDAISSALRDNGLH--------IDKFLEPSAGIGSFIQSFSENQKASVTAYEKDLLT 160

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
               ++L PE        + I   E  P R+ +                  +    SN P
Sbjct: 161 GKILKQLYPE------INIRINGFEEIPEREQN-----------------TYDVIASNIP 197

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG     D       +   E           S  +  FL     K       GG  A + 
Sbjct: 198 FGDTSVFDLSYSRSRNSAKEQ-------AARSIHNYFFL-----KGADMLREGGLLAYIT 245

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417
           S   L + +       IRR L++++ + ++V LP +LF     T + + L IL     +E
Sbjct: 246 SQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKE 301

Query: 418 RRGKVQLINATDLW 431
                 L +  DL+
Sbjct: 302 N-----LTDREDLF 310


>gi|168697902|ref|ZP_02730179.1| hypothetical protein GobsU_00160 [Gemmata obscuriglobus UQM 2246]
          Length = 1267

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 91/341 (26%), Gaps = 65/341 (19%)

Query: 120 FSSTIARLEKAGLLYKICKNFSG------IELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
             + ++      +L    +           +    +   R + ++Y+ L         + 
Sbjct: 156 IPNWLSPDAAKDILLPFFQKIDAGSGLLVHDFTDPSFDTRFLGDLYQDL----SEAARKK 211

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                TP  V        L P    F         + DP CG+G FL    N + +    
Sbjct: 212 YALLQTPVFVEEFILDRTLLPAIETFGL---ATVKMIDPACGSGHFLLGGFNKLLELWVK 268

Query: 234 HKI---------PPILVPHGQELEPETHAVCVAGMLI------RRLESDPRRDLSKNIQQ 278
            +            +   HG +L P   A+    +L+               D   N+  
Sbjct: 269 KEPGTPPRELVQRALDAIHGVDLNPYAVAIARFRLLLAAWQAAGVTSLKNAPDFKLNLAC 328

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR-----FGPGLPKISD 333
           G +L      G+     L    FG  ++ + D VE E               P +     
Sbjct: 329 GDSLL---HGGRSVQKTLDEEVFGHTYQPE-DPVELERLLRPGTYHAVVANPPYITPKDR 384

Query: 334 G--------------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           G                   +    +L       G    + ++S +          E  +
Sbjct: 385 GLCDQYRDRYSACHRQYSLSVPFMQRLFELACANGFIGQITANSFMKR--------EFGK 436

Query: 380 WLLEN-----DLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            ++E      DL   I +    +     I T +    NR  
Sbjct: 437 KIVEAFFPLIDLTHIIDSSGAHI-PGHGIPTVILFGRNRPP 476


>gi|557885|gb|AAA50500.1| AccI methylase [Bergeyella zoohelcum]
 gi|1098130|prf||2115270B methyltransferase AccI
          Length = 541

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 60/303 (19%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E  +    F TP  + +     +L             ++T+ +P  G G         + 
Sbjct: 24  EHRKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLG----VFSRAIL 70

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                  I       G E++                        + NI     +  D   
Sbjct: 71  SQQKEINIK------GFEVDETIFENAK---------EYFDDFENVNILLQDYMYND--W 113

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             ++   + NPP+ K  + D   + KE +          L   ++   LFL+   ++L  
Sbjct: 114 KNKYDGIICNPPYFKFHDYDNKNILKEIETN----LKCKLNGFTNLYTLFLLKSIHQL-- 167

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIATY 406
             +  GR A ++ S  L +         ++ +L+++  +  I+ +    ++F        
Sbjct: 168 --SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTAS 221

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + + +N   +    KVQ  N   L    +               +I++ Y +    + + 
Sbjct: 222 IILCAN---DNITDKVQFNNIQSLQDLSK-------------IDEIINKYPNFLETEQTY 265

Query: 467 MLD 469
              
Sbjct: 266 NFS 268


>gi|18071214|ref|NP_542283.1| putative DNA methylase [Sinorhizobium phage PBC5]
 gi|17940320|gb|AAL49564.1|AF448724_1 putative DNA methylase [Sinorhizobium phage PBC5]
          Length = 2849

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 73/265 (27%), Gaps = 60/265 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  S       T  ++V  A  +         +        + +P+ G G FL    
Sbjct: 41  EYASAESSTRNAHYTSAEIVKAAWDIA--------RRLGFKGGQVLEPSVGAGNFLGLMP 92

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + D              G EL+  T  +    +               NIQ      K
Sbjct: 93  GELRD---------GARITGVELDRVTGGIAK-NL-----------YPGANIQTPVGFEK 131

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + NPPFG +   D       +K      F                    
Sbjct: 132 LTLPDNYFDLAIGNPPFGSERLYD-KQRRHLNKLSIHNFFFA------------------ 172

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       GG  A+V+++  L            R  + +   +   + LP + F     T
Sbjct: 173 KSIETLRPGGVLAMVVTNRFL-----DGSNEAAREQIAKTADLVGAIRLPNNAFLKNAGT 227

Query: 402 NIATYLWILSNR----KTEERRGKV 422
            + T + IL  R    K +    KV
Sbjct: 228 EVTTDIVILRKRLEGDKPDTSWTKV 252


>gi|159898482|ref|YP_001544729.1| hypothetical protein Haur_1958 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891521|gb|ABX04601.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1333

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 47/162 (29%), Gaps = 33/162 (20%)

Query: 154 VMSNIYEHLIRR-----------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            + ++YE L+                   +    + T  ++V       L+P  A     
Sbjct: 434 ELGSVYESLLDYRPVVAGTSFDLVAGTERKTTGSYYTRPELVQELIKSALEPIIAERLRD 493

Query: 203 PGM-----IRTLYDPTCGTGGFLTDAMNHV----------------ADCGSHHKIPPILV 241
                     T+ DP CG+G FL  A   +                       +      
Sbjct: 494 KNPEQALLSITVCDPACGSGHFLLAAARRIGRELARVRSGEDQPTPDQFRHAVRDVITHC 553

Query: 242 PHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282
            +G +  P    +C   + I       P   +  +I+ G++L
Sbjct: 554 IYGVDFNPLAVDLCKLALWIEGHCAGMPLSFIDYHIRWGNSL 595


>gi|224543141|ref|ZP_03683680.1| hypothetical protein CATMIT_02341 [Catenibacterium mitsuokai DSM
            15897]
 gi|224523928|gb|EEF93033.1| hypothetical protein CATMIT_02341 [Catenibacterium mitsuokai DSM
            15897]
          Length = 1463

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/401 (13%), Positives = 105/401 (26%), Gaps = 76/401 (18%)

Query: 54   AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
               +            ++    A  + Y  +E +L   G+        + +         
Sbjct: 1066 EWLDAQEQAEPLPEKEKAPAVTADRNNYRITEDTLGIGGAKEKFKANMAAVN-------- 1117

Query: 114  IFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDTVPDRVMSNIYEHLI-RRFGSEV 170
            +  D +  + +A  E+  +L         S      +         +Y  L    + +  
Sbjct: 1118 LLHDLEIENRLATPEEQKILAGYVGWGGLSMAFDENNAAWANEFKELYVTLSPEEYRAAK 1177

Query: 171  SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                  F TP  V+      L          S G    + +P+CGTG F     + +   
Sbjct: 1178 ESTLTAFYTPPVVIKAMYEAL-----DRLGFSEG---NILEPSCGTGNFFGLLPDSM--- 1226

Query: 231  GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                        HG E++  T  +              +     NI       K      
Sbjct: 1227 -------AKSKLHGVEIDSLTGRIAK------------QLYQKANIAIE-GFEKTKLPDD 1266

Query: 291  RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
             F   L N PFG  ++ +      +        F   L                      
Sbjct: 1267 HFDVVLGNVPFG-DFKVNDSRYNAQKFLIHDFFFAKAL-------------------DKV 1306

Query: 351  NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYL 407
              GG    + S   +          E+R+++ +   +   + LP + F     T + + +
Sbjct: 1307 RAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFRANAGTEVTSDI 1361

Query: 408  WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
             IL        R +V  I +  +       G        + 
Sbjct: 1362 LILQK------RDRVIDIESDWVHLDTDENGVTMNSYFVEH 1396


>gi|218768566|ref|YP_002343078.1| hypothetical protein NMA1791 [Neisseria meningitidis Z2491]
 gi|121052574|emb|CAM08914.1| hypothetical protein NMA1791 [Neisseria meningitidis Z2491]
          Length = 803

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 85/346 (24%), Gaps = 83/346 (23%)

Query: 24  GDFKHTDFGKVILPFTLLRRLECALEPTR----SAVREKYLAFGGSNIDLESFVKVAGYS 79
           G ++  +    I     L   + +    R        E           L    +     
Sbjct: 49  GIYEEHELRLFITRLLFLFFADDSAVFRRNYLFQDFLENCKEADTLGDKLNQLFE----- 103

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK- 138
           F NT         + + +     Y+       K     FDF++   R         +   
Sbjct: 104 FLNTP--DQKRSKTQSEKFKGFEYVNG--GLFKERLRTFDFTAKQHR--------ALIDC 151

Query: 139 -NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-- 195
            NF    + P+     +   +++ ++    ++    A    T    +      L   +  
Sbjct: 152 GNFDWRNISPE-----IFGTLFQSVMD---AQERREAGAHYTEAANIDKVINGLFLENLR 203

Query: 196 -----DALFKESPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--- 237
                    K                    DP CG G FL  A + +             
Sbjct: 204 AEFEAVKALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALK 263

Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------- 270
                          +   HG E++     +    M ++  + + R              
Sbjct: 264 DKADGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTL 323

Query: 271 --DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + +  I   ++L       +   Y   NPPF     + K+    
Sbjct: 324 PLEDAAEIIHANSLRTPW---QAADYIFGNPPFIGSTYQTKEQKND 366


>gi|294054709|ref|YP_003548367.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
 gi|293614042|gb|ADE54197.1| N-6 DNA methylase [Coraliomargarita akajimensis DSM 45221]
          Length = 768

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 80/256 (31%), Gaps = 59/256 (23%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           LI RFG       ++   P +V    T +                + + DP  G G    
Sbjct: 45  LIARFGR---REIDELRIPYEVSRFITRI----------AQERSPKRVLDPCAGLGFLAA 91

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS- 280
            A   +                     PE+        L   + +        N Q G  
Sbjct: 92  PANAILQ--------------------PESFDAYAMSQLAAEVWAKRSDVPGINFQLGDG 131

Query: 281 --TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              L +D   G+ +   L+ PPFG            E              +        
Sbjct: 132 LAALLED--EGQSYDAILTCPPFGVIARGPYQFSINEKI------------REVKAEYAQ 177

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDL 397
           L+ LA+ +    N GG A  V++++  F     +G   +   L E    + A V LP  +
Sbjct: 178 LLALASCMR--LNEGGVAVFVVANA--FFMDRKNGVKSL---LAEMGYKLTAAVELPAGI 230

Query: 398 FFR-TNIATYLWILSN 412
           F   TNIAT++ +L  
Sbjct: 231 FAPLTNIATHIVVLEK 246


>gi|29376809|ref|NP_815963.1| hypothetical protein EF2307 [Enterococcus faecalis V583]
 gi|29344274|gb|AAO82033.1| conserved hypothetical protein [Enterococcus faecalis V583]
          Length = 3173

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 68/253 (26%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S  S       T   V+      +          +PG   T+ +P+ G G F    
Sbjct: 1613 GEYQSAQSTVLNAHYTSPTVIQAIYNAV-----EQMDFTPG---TVLEPSMGIGNFFGML 1664

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +A              +G EL+  T  +              +     +I       
Sbjct: 1665 PEKLAAAK----------LYGVELDDLTGRIAR------------QLYQKADITV-DGFE 1701

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG     DK    +                    +++   +  
Sbjct: 1702 RTDHPDDFFDLAVGNVPFGSYQVHDKRYDRQ--------------------NLMIHDYFI 1741

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A + +   +         S+ R  L +   +   V LP++ F     
Sbjct: 1742 TKTLDKVRPGGIVAFITTKGTM-----DKKNSKAREALAQKADLLGAVRLPSNAFKANAG 1796

Query: 401  TNIATYLWILSNR 413
            T + T +     R
Sbjct: 1797 TEVTTDILFFQKR 1809


>gi|325914675|ref|ZP_08177016.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539177|gb|EGD10832.1| DNA/RNA helicase, superfamily II, SNF2 family [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 1048

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 76/250 (30%), Gaps = 47/250 (18%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +    +   E    + TP DV  L   +L  P+    ++  G   ++ D + G G  +  
Sbjct: 31  LGGLAAARRECLAQYFTPDDVAALMWRIL-IPEMDSIRQRTGCKVSVIDNSIGKGSLIQF 89

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A        +          HG+ LE    A+  A      +E D       +++     
Sbjct: 90  AR-------ADQHKVAGFDIHGESLEALGKALEAA-----GVEHDLLCADMTDVRP---- 133

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                  KR+   L+NPPF       +     ++     GRFG   P  S  S       
Sbjct: 134 -------KRYDIALANPPFSVHL---QSVHMMDYACTSYGRFG---PNTSAMS------- 173

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FR 400
                          +VL  +   +      ES  R          A+V LP   F    
Sbjct: 174 HPYALAQALEAAEIGVVLLPTTYAHHAWNQHESSAR--------FHALVDLPARTFIDQG 225

Query: 401 TNIATYLWIL 410
           T I   L + 
Sbjct: 226 TAIEVSLIVF 235


>gi|300779500|ref|ZP_07089358.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
 gi|300505010|gb|EFK36150.1| probable DNA methylase [Chryseobacterium gleum ATCC 35910]
          Length = 1776

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/360 (15%), Positives = 100/360 (27%), Gaps = 73/360 (20%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             EL      +    N Y   I +         + F TP ++     A + D   +    
Sbjct: 73  TQELFSHIKDNSESENSYREYISKI---RGSILDAFYTPTEITQSIAAAITDTGIS---- 125

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
               I ++ +P+ G G F+                   +  + Q+             L+
Sbjct: 126 ----ISSILEPSAGVGAFI---------EPFTGIDGRRICAYEQD-------------LL 159

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                      + +I+   +          +   + N PFG     D           + 
Sbjct: 160 TGKILKNLYGSNADIR-IDSFENMHEEDTGYDLIIGNIPFGTTSIFDLSYSRG---KDQA 215

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
            +F       S  +  FL     K       GG  A + S   L +         IR  L
Sbjct: 216 RKFAA----QSVHNYFFL-----KATDKLREGGLLAFITSQGVLNSQSNFP----IREAL 262

Query: 382 LENDLIEAIVALPTDLF--FRTNIATYLWILSNRKTEE-------------RRGKVQLIN 426
           +      + + LP +LF    T++ T L +L                        +   N
Sbjct: 263 MNEHRFVSALRLPNNLFEESGTSVGTDLIVLQKSSGPRSLSGRALDFMGTSENCNLLFNN 322

Query: 427 -----ATDLWTSIRNEGKKRR-IINDDQRRQIL-DIYVSRENGKFSRMLDYRTFGYRRIK 479
                AT  +      GK     ++D    +I  D+Y       F R  D + F   ++ 
Sbjct: 323 PNHIIATRSFQDTDKYGKPITIHLHDGGTERIAEDLYRKLSE-DFQRYFDLKMFNEHKVT 381


>gi|148641527|ref|YP_001274371.1| Type II restriction enzyme methylase subunits-like protein
           [Psychrobacter sp. PRwf-1]
 gi|148573279|gb|ABQ95333.1| Type II restriction enzyme methylase subunits-like protein
           [Psychrobacter sp. PRwf-1]
          Length = 934

 Score = 51.5 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 67/245 (27%), Gaps = 52/245 (21%)

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI----RRFGSEVSEGAE 175
           F  TI        LY +      ++     +   +  ++++ ++         +      
Sbjct: 262 FEETINIPYFDEKLYNLVMECDALDWT--EISPAIFGSMFQSVLDASGGDSTEDKRREFG 319

Query: 176 DFMTP-RDVVHLATALLLDPDDALFKESPG------------MIRTLYDPTCGTGGFLTD 222
              T  ++++ +  +L L      F +                    +DP CG G FL  
Sbjct: 320 AHYTSEKNILKVINSLFLQELRDEFSKCTNNTPRAVQLYEKLPTLKFFDPACGCGNFLII 379

Query: 223 AMNHVA--------DCGSHHKIPPI---------LVPHGQELEPETHAVCVAGMLIRRLE 265
           A   +               K                +G E+EP    +    M I   +
Sbjct: 380 AYRELRLLENQLIAKIFGDQKGLLDISSMCNVTVDQFYGIEIEPHAVHIARVAMWITDHQ 439

Query: 266 SDPRRDL-------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDK 309
            +                  S +I +G+ L  D           Y + NPPF  K  +  
Sbjct: 440 LNMTTAERFGTTRPTTPIVYSPHIIEGNALQIDWETVLPANDCSYVMGNPPFIGKSNQSS 499

Query: 310 DAVEK 314
           +    
Sbjct: 500 EQKSD 504


>gi|313896529|ref|ZP_07830080.1| type I restriction modification DNA specificity domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974953|gb|EFR40417.1| type I restriction modification DNA specificity domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 452

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 24/160 (15%)

Query: 261 IRRLESDPRRDLSKN-IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           I  +          + + Q +++ +  F  ++F   +S P            + + ++  
Sbjct: 75  IHVILLKEILRAYPHTVVQKTSIYEYEFLREKFDLIMSVP-----------TMGRRNRVD 123

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           +L RF        D  M+ L +L   L       G+ AIV+ +   F G      + +R 
Sbjct: 124 DLNRFMCR-----DYEMVALENLLLHLSSA----GKLAIVMPAKITFGGGRI---ANLRN 171

Query: 380 WLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
           ++ E   +E I  LP  +F  T + T+L+++S  KTE+  
Sbjct: 172 FIQEMYCLEEIAELPDGIFVGTGVKTHLFVISAGKTEDVT 211


>gi|307710462|ref|ZP_07646899.1| endonuclease and methylase LlaGI [Streptococcus mitis SK564]
 gi|307618725|gb|EFN97864.1| endonuclease and methylase LlaGI [Streptococcus mitis SK564]
          Length = 1565

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 68/250 (27%), Gaps = 34/250 (13%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
             +Y+          +E      TP +VV      + +       K        + DP  G
Sbjct: 832  TLYDKFFSTGFKSTTERLGIVFTPVEVVDFIVKSVDVVLRKHFGKTLASENVHILDPFTG 891

Query: 216  TGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGM--LIRRLES 266
            TG F+T  ++++       +              H  E+   ++ +    +  +   +  
Sbjct: 892  TGTFITRTLHYLKSLMDSGEITFDDILRKYTQELHANEIVLLSYYIAAINIEAVFDEING 951

Query: 267  DPRRDLSKNIQQGSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEK 307
            D      + I    T      +D      F                  + NPP+ K    
Sbjct: 952  DEPYTPFEGIVLTDTFESTELEDTLDDSFFGTNDKRLKRQQEQPITAIIGNPPYSKGQGS 1011

Query: 308  DKDAVEKEH--KNGELGRFGPGLPKISDGSMLFL---MHLANKLELPPNGGGRAAIVLSS 362
            + D  +  H  K  E  R        ++     +   +             G  + V + 
Sbjct: 1012 ESDNNQNIHYPKLEENIRRTYVAKSKANAQNATMDSYVKAVRWATDRLTNQGIISFVSNG 1071

Query: 363  SPLFNGRAGS 372
            S L +  A  
Sbjct: 1072 SFLDSSSADG 1081


>gi|153011948|ref|YP_001373160.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
 gi|151563836|gb|ABS17331.1| N-6 DNA methylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1702

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 73/279 (26%), Gaps = 60/279 (21%)

Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             +    E ++    + S          TP  ++            A  +        + 
Sbjct: 144 DDLGGSLESVVSETDYASLARCTQYAHFTPEFIIRAIW--------AGLQRLGWRGGRVL 195

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P  GTG F                        G EL+P T  +                
Sbjct: 196 EPGIGTGLFPALMPEAFRA---------SSYVTGIELDPVTARIVR------------LL 234

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I  G     DL  G  +   + NPPF  +  +                       
Sbjct: 235 QPKARIVNGDFARTDL--GVIYDLAIGNPPFSDRTVRSDRNYRSLGLRLHDY-------- 284

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+    + L+     G  AA V S   +        ++  R  + ++  + A 
Sbjct: 285 -------FIARSIDLLKP----GALAAFVTSHGTM-----DKADTTAREHIAKSANLVAA 328

Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
           + LP   F     T++   +     RK  E  G V  ++
Sbjct: 329 IRLPEGAFRADAGTDVVVDILFFRKRKAGEPEGDVTWLD 367


>gi|253699431|ref|YP_003020620.1| hypothetical protein GM21_0788 [Geobacter sp. M21]
 gi|251774281|gb|ACT16862.1| hypothetical protein GM21_0788 [Geobacter sp. M21]
          Length = 93

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 12 ANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECA---LEPTRSAVREKYLAFGGSNID 68
           N++W  A  + G          I P  ++RR+      +        ++  A G +  D
Sbjct: 15 VNWLWDAACSIRGAVGALKQKDYIQPLIVIRRISDVGGEIAHLAEDFLDEEAAQGIAEAD 74

Query: 69 LESFV 73
           +   
Sbjct: 75 RKLIR 79


>gi|298736366|ref|YP_003728892.1| hypothetical protein HPB8_871 [Helicobacter pylori B8]
 gi|298355556|emb|CBI66428.1| hypothetical protein HPB8_871 [Helicobacter pylori B8]
          Length = 968

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/372 (11%), Positives = 93/372 (25%), Gaps = 53/372 (14%)

Query: 36  LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           L     +        L+  R  + +        ++     +                 L 
Sbjct: 111 LKMIFDKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHIITKP----------IFDALF 160

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             N +N +   +                      L+    LY+  K  +       +  +
Sbjct: 161 GDNIQNPIAKALDKMVQK----LSTLGLQGETKDLKN---LYESVKTEATHAKSQKSQQE 213

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
             + N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 214 L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 272

Query: 212 PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTG F+    +  +        K          ++   ++ + +  +       D  
Sbjct: 273 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 332

Query: 270 RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWE 306
               KNI    +L                        KD    +     + NPP+    +
Sbjct: 333 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKDIKDTLANQNIRVIIGNPPYSAGAK 392

Query: 307 KD----KDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIVL 360
            +    ++    + +     ++G      S G      L+             G    V+
Sbjct: 393 SENDNNQNLSHPKLERLVYEKYGKNSTSRSVGQTTRDTLIQSIRMASDVVKDKGVLGFVV 452

Query: 361 SSSPLFNGRAGS 372
           +   + +  A  
Sbjct: 453 NGGFIDSKSADG 464


>gi|168179585|ref|ZP_02614249.1| modification methylase family protein [Clostridium botulinum NCTC
           2916]
 gi|182669821|gb|EDT81797.1| modification methylase family protein [Clostridium botulinum NCTC
           2916]
          Length = 577

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y   I+
Sbjct: 2   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 53  -----GIKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103

Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270
                    ++ +    + I        + +            + +  ++I  L      
Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               N ++   L +D+     F   + NPP+         +V+KE+      ++G     
Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKRKYGYVYKD 215

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             D S  F ++  N      N   +   + S   + +         +R++L EN  I  I
Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267

Query: 391 VALPTDLFFR------TNIATYLWILSNR 413
           +      F+         I   +  +   
Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291


>gi|217032483|ref|ZP_03437975.1| hypothetical protein HPB128_156g13 [Helicobacter pylori B128]
 gi|216945829|gb|EEC24450.1| hypothetical protein HPB128_156g13 [Helicobacter pylori B128]
          Length = 928

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/372 (11%), Positives = 93/372 (25%), Gaps = 53/372 (14%)

Query: 36  LPFTLLR---RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           L     +        L+  R  + +        ++     +                 L 
Sbjct: 71  LKMIFDKNPEFFHGFLDSLRENIHQNIKEDEALDMITSHIITKP----------IFDALF 120

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             N +N +   +                      L+    LY+  K  +       +  +
Sbjct: 121 GDNIQNPIAKALDKMVQK----LSTLGLQGETKDLKN---LYESVKTEATHAKSQKSQQE 173

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYD 211
             + N+Y    +    + SE      TP +VV                 +      T++D
Sbjct: 174 L-IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFD 232

Query: 212 PTCGTGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           P  GTG F+    +  +        K          ++   ++ + +  +       D  
Sbjct: 233 PFTGTGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSS 292

Query: 270 RDLSKNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPFGKKWE 306
               KNI    +L                        KD    +     + NPP+    +
Sbjct: 293 LKNFKNIALTDSLDYLEEKTNKGALPLYEDLKENKDIKDTLANQNIRVIIGNPPYSAGAK 352

Query: 307 KD----KDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIVL 360
            +    ++    + +     ++G      S G      L+             G    V+
Sbjct: 353 SENDNNQNLSHPKLERLVYEKYGKNSTSRSVGQTTRDTLIQSIRMASDVVKDKGVLGFVV 412

Query: 361 SSSPLFNGRAGS 372
           +   + +  A  
Sbjct: 413 NGGFIDSKSADG 424


>gi|255284442|ref|ZP_05348997.1| type I restriction-modification system, M subunit [Bryantella
           formatexigens DSM 14469]
 gi|255265027|gb|EET58232.1| type I restriction-modification system, M subunit [Bryantella
           formatexigens DSM 14469]
          Length = 114

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 2   TEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTR 52
           T+       L   IW  A++L G     DF   +L         C   P +
Sbjct: 63  TKKEQERDELHRAIWAIADELRGAVDGWDFKNYVLGTMF----SCEYRPYK 109


>gi|310823755|ref|YP_003956113.1| hypothetical protein STAUR_6529 [Stigmatella aurantiaca DW4/3-1]
 gi|309396827|gb|ADO74286.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 526

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 78/257 (30%), Gaps = 42/257 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E L+ RF          + TP  +V     L L   D           ++ DP CG G 
Sbjct: 17  EEALVHRFPGLDRRVLGAYYTPASLVERTLGLALTHLD-------SGPLSIVDPACGAGA 69

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           FL+ A           ++ P     G E+      +C A            R  S  +  
Sbjct: 70  FLSAA----------ARLRPEANLLGLEVTAPAAQLCQA------------RVPSAKVFV 107

Query: 279 GSTLS---KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           G  L    + L            + NPP+       KD          L    P    + 
Sbjct: 108 GDALRGGLEPLLTHIPAAHQELWVGNPPYNGTSPVLKDRPAYARLRSLLPVALPSGTSLR 167

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           D    F + +A          G  A +  SS L         + +R+ LL+   +  +V 
Sbjct: 168 D-DFAFFLLVAAHRLTTRP--GVLAFITPSSLL----DAFLYAPLRQALLDMLKLRQVVD 220

Query: 393 LPTDLFFRTNIATYLWI 409
           L    F  T + T + +
Sbjct: 221 LGAGAFANTQVRTCITV 237


>gi|115374556|ref|ZP_01461836.1| N-6 DNA Methylase family [Stigmatella aurantiaca DW4/3-1]
 gi|115368426|gb|EAU67381.1| N-6 DNA Methylase family [Stigmatella aurantiaca DW4/3-1]
          Length = 565

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 78/257 (30%), Gaps = 42/257 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E L+ RF          + TP  +V     L L   D           ++ DP CG G 
Sbjct: 56  EEALVHRFPGLDRRVLGAYYTPASLVERTLGLALTHLD-------SGPLSIVDPACGAGA 108

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           FL+ A           ++ P     G E+      +C A            R  S  +  
Sbjct: 109 FLSAA----------ARLRPEANLLGLEVTAPAAQLCQA------------RVPSAKVFV 146

Query: 279 GSTLS---KDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           G  L    + L            + NPP+       KD          L    P    + 
Sbjct: 147 GDALRGGLEPLLTHIPAAHQELWVGNPPYNGTSPVLKDRPAYARLRSLLPVALPSGTSLR 206

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           D    F + +A          G  A +  SS L         + +R+ LL+   +  +V 
Sbjct: 207 D-DFAFFLLVAAHRLTTRP--GVLAFITPSSLL----DAFLYAPLRQALLDMLKLRQVVD 259

Query: 393 LPTDLFFRTNIATYLWI 409
           L    F  T + T + +
Sbjct: 260 LGAGAFANTQVRTCITV 276


>gi|325104318|ref|YP_004273972.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
 gi|324973166|gb|ADY52150.1| N-6 DNA methylase [Pedobacter saltans DSM 12145]
          Length = 1812

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 96/314 (30%), Gaps = 66/314 (21%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  +                  ++     L++    +  +               F TP
Sbjct: 49  VLNPVENEIDINHWRKTEHDLFPLTQELHQLLKENSEDDKQYRKYVDSMKSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V+   ++ L D            I    +P+ G G F+     +     + ++   + 
Sbjct: 109 PKVIDAISSALRDNGLH--------IDKFLEPSAGIGSFIQSFSENQKASVTAYEKDLLT 160

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
               ++L PE        + I   E  P R+ +                  +    SN P
Sbjct: 161 GKILKQLYPE------INIRINGFEEIPEREQN-----------------TYDVIASNIP 197

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG     D       +   E           S  +  FL     K       GG  A + 
Sbjct: 198 FGDTSVFDLSYSRSRNSAKEQ-------AARSIHNYFFL-----KGADMLREGGLLAYIT 245

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417
           S   L + +       IRR L++++ + ++V LP +LF     T + + L IL     +E
Sbjct: 246 SQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKE 301

Query: 418 RRGKVQLINATDLW 431
                 L +  DL+
Sbjct: 302 N-----LTDREDLF 310


>gi|260662346|ref|ZP_05863241.1| methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260553037|gb|EEX25980.1| methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 921

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 60/224 (26%), Gaps = 55/224 (24%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L  +    +  +     +   +   ++E  +     E         T  + +H     
Sbjct: 286 DELRALLLEHASADFDWSQISPTIFGAVFESTL---NPETRRQGGMHYTSIENIHKLIDP 342

Query: 191 LLDPD-----DALFKESPGMIR--------------TLYDPTCGTGGFLTDAMNHVADCG 231
           L   +     + + K                     T  DP CG+G FLT+    + +  
Sbjct: 343 LFLNELRTQLEDIKKLKQPATVKRRAAAFQDKLAGLTFLDPACGSGNFLTETYLSLRELE 402

Query: 232 SH-----------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS- 273
           +                       I   +G E+     +V    + I   +         
Sbjct: 403 NDAIRLIYGDQNMLALEKQIIKVSIQQFYGFEINDFAVSVGKTALWIAESQMMEETKSIV 462

Query: 274 ------------KNIQQGSTL---SKDLFTGKRFHYCLSNPPFG 302
                        NI +G+ L     +L    + +Y + NPPF 
Sbjct: 463 YTNIDFLPLKTYTNITEGNALRFSWSELVPANQLNYIIGNPPFN 506


>gi|197301283|ref|ZP_03166368.1| hypothetical protein RUMLAC_00014 [Ruminococcus lactaris ATCC
           29176]
 gi|197299601|gb|EDY34116.1| hypothetical protein RUMLAC_00014 [Ruminococcus lactaris ATCC
           29176]
          Length = 939

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 77/281 (27%), Gaps = 72/281 (25%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           Y+    FSD +  I      +  I  L    LL K  +NF   ++ P      +   ++E
Sbjct: 281 YVNGGLFSDESIEIPP---LTEEIKEL----LLTKASENFDWSDISPT-----IFGAVFE 328

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKESPGMIR-------- 207
             +     E         T    +H     L   D       + K      +        
Sbjct: 329 STL---NPETRRAGGMHYTSISNIHKVIDPLFLEDLKTEFQEILKIQVQRTKIKRLDEFQ 385

Query: 208 ------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----------------LVPHG 244
                    DP CG+G FLT+    +    +      +                    +G
Sbjct: 386 NKIASLKFLDPACGSGNFLTETYLSLRRLENEVIREKVGGQMTLGDVHNPIRVSIQQFYG 445

Query: 245 QELEPETHAVCVAGMLI-------------RRLESDPRRDLS-KNIQQGSTL---SKDLF 287
            E+      V    + I                  D     +  NI +G+ L     D+ 
Sbjct: 446 IEINDFAVTVAKTALWIAESQMMEETKNIVYGFNDDFLPLKTYVNITEGNALRLDWDDVV 505

Query: 288 TGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGP 326
                 Y + NPPF   K    ++    K   N + GR   
Sbjct: 506 PASELSYIMGNPPFVGHKNVSLEQKNDMKRIFNNKQGRLDY 546


>gi|153871657|ref|ZP_02000772.1| type II restriction enzyme, methylase subunit [Beggiatoa sp. PS]
 gi|152071880|gb|EDN69231.1| type II restriction enzyme, methylase subunit [Beggiatoa sp. PS]
          Length = 508

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/334 (16%), Positives = 97/334 (29%), Gaps = 108/334 (32%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDPTCGTG 217
            +    + TP  +V       + P     K +                   + DP CG+G
Sbjct: 2   KKAGGVYYTPSYIVDYIVKQTIGPLLERQKVNAKESIKLLGHGKHSASRLKILDPACGSG 61

Query: 218 GFLTDAMNHVADCG-------------------------------SHHKIPPILVPHGQE 246
            FL  A     D                                 S  K   +   +G +
Sbjct: 62  SFLLGAYQFFLDWYLEQYLQEPAKWVKGKKPRLYHASGGLWKLTVSERKRILLSHIYGVD 121

Query: 247 LEPETHAVCVAGMLIRRLESD-------------PRRDLSKNIQQGSTLSKDLFTGKR-- 291
           ++ +   V    +L++ LE +                D++ NI+ G++L  D F  K+  
Sbjct: 122 IDLQAVEVTKLSLLLKVLEDEQSVISQLSLFKERVLPDINNNIRCGNSLIGDEFYQKKQL 181

Query: 292 ----------------------------FHYCLSNPPF--GKKWEKDKDAVEKEHKNGEL 321
                                       F   + NPP+   +  +K      + +K+  +
Sbjct: 182 ELIDAETQYRVNAFDWKNEFSEVMQAGGFDAVIGNPPYVRIQTLKKWTPLEVEFYKHQYI 241

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                     S G+    +    K     N  G    +L +  L       GE ++R+ +
Sbjct: 242 A--------ASKGNYDLYVLFVEKGLSLLNERGYLGFILPNKFLLT---DYGE-KLRQLI 289

Query: 382 LENDLIEAIVALPT----DLFFRTNIATYLWILS 411
            E    EA+V L       +F +    T L  LS
Sbjct: 290 SEQ---EALVRLVDFGHEQVFEQATTYTCLLFLS 320


>gi|88603162|ref|YP_503340.1| hypothetical protein Mhun_1909 [Methanospirillum hungatei JF-1]
 gi|88188624|gb|ABD41621.1| hypothetical protein Mhun_1909 [Methanospirillum hungatei JF-1]
          Length = 147

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/121 (9%), Positives = 27/121 (22%), Gaps = 40/121 (33%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85
              + +   +L    ++ +       + A+ E                  +G SF     
Sbjct: 1   MDASQYKDYVLVLLFVKYVSDKYAGDKKALIE----------------VPSGGSFS---- 40

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
             +  L                +            +  I +L +A  L  +         
Sbjct: 41  -DMVALKG--------------NPEIGD-----KINQIIGKLAEANELKGVIDQAPDAAW 80

Query: 146 H 146
           H
Sbjct: 81  H 81


>gi|332308696|ref|YP_004436546.1| N-6 DNA methylase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176025|gb|AEE25278.1| N-6 DNA methylase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 4626

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 74/273 (27%), Gaps = 58/273 (21%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             +    +     F TP  VV               +        +YDP+ G G F     
Sbjct: 3089 EYSEIKASALTAFYTPVPVVQGVWK--------SLEHMGFEGGRVYDPSMGLGNFFGLMP 3140

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              +A               G EL+  T  +                  S  I + +   K
Sbjct: 3141 ERLAANSK---------LAGGELDTITAGIAK-------------FLQSDVIVKNTGFEK 3178

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             L     F    SN PFG                     F    P  +  ++    +   
Sbjct: 3179 SLLPADYFDVMTSNIPFGN--------------------FKIHDPAYNKHNLNIHNYFIA 3218

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A + +          S   + R    ++  + + + LP D+F     T
Sbjct: 3219 KSLDTIKPGGVVAYITT-----TYTMDSQSKKARELFYKSSDLVSAIRLPNDVFKKHAGT 3273

Query: 402  NIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
            N+   L I   R   E  G    I+A     S+
Sbjct: 3274 NVNADLLIFRKRHDHEPAGDESWIDAFHYNKSM 3306


>gi|313125635|ref|YP_004035905.1| type i restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312292000|gb|ADQ66460.1| type I restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 719

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 105/344 (30%), Gaps = 50/344 (14%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFY--NTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            ++ L        L   +K   Y  Y  NT   S + L +++ R   ++      ++   
Sbjct: 45  LDEPLKVLARQASLNLLLKSTLYEHYQKNTPNTSFNELDASDAREAFQTA----RESTGD 100

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           I         +A +  A  L  +    +   L     P   +  ++E +      E    
Sbjct: 101 IAFTEYLLDELAWITSAEDLSSVLD--ARQYLLNSDNPAETIGKLFEQI---TPQESRRK 155

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP ++  +     +               T+ DP  G G     A        S 
Sbjct: 156 LGQFRTPPEIADIMATWCVQESTD----------TVLDPGVGAGALSAPAYKRKLKLSSD 205

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL-SKDLFTGKRF 292
             +      HG +L      +    + +             N+Q G  L           
Sbjct: 206 ASL---ATMHGIDLNELALVMGATTLRL------LDHGGPHNLQTGDFLELSPEDIDAEV 256

Query: 293 HYCLSNPPFGKKWEKDKDAVEK-----EHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +SNPP+ +  E  ++   +     E + G           +S  S ++  +     E
Sbjct: 257 DAVISNPPYSRHHELSEEYKTRVNTQIEQELGCD---------VSALSPMY-AYFYFHAE 306

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
              + GGRA+ +  S  L      S    ++++L     + A+V
Sbjct: 307 KFLSPGGRASYITPSEFLETNYGES----LKQYLTNEFNLNALV 346


>gi|332884848|gb|EGK05103.1| hypothetical protein HMPREF9456_03016 [Dysgonomonas mossii DSM
           22836]
          Length = 1864

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 72/481 (14%), Positives = 138/481 (28%), Gaps = 85/481 (17%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKAGLLYKI--- 136
           YN   +    + +      L+      +   + IF  +  F    A L  A     I   
Sbjct: 3   YNKRTHLHQNIDAIKLALRLDKEQKKATPKEREIFAKYSGFGGIKAILNPADKPEDIERW 62

Query: 137 ----CKNFSGI-ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
                + F  + ELH     +     +Y+   R   S  S     F TP+ V+       
Sbjct: 63  PKSEIELFPLVRELHEVLRENSPTPEVYK---RYVSSLKSSILTAFYTPKPVIDALA--- 116

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                   K+         +P+ GTG F++       +                      
Sbjct: 117 -----DALKDRGITPTRFLEPSAGTGAFISSFKEIAPEAKVTSFEK-------------- 157

Query: 252 HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
                  +L  ++ S    +    I+    +  +    + F    SN PFG     D   
Sbjct: 158 ------DLLTGKILSHLYPEDKVRIEGYEKM--EGRYSQHFDVIASNIPFGDVSVFDPLL 209

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
              E            +P +   +     +   K  +    GG  A + S   L + +  
Sbjct: 210 SNHE------------IPAVKQSTQAIHNYFFVKSVMSAREGGIIAFITSQGVLNSEQN- 256

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQ--LIN 426
                IR +L++   + + + LP +LF     T + + L +L          + Q   I 
Sbjct: 257 ---KPIREYLMDTCDVVSAIRLPNNLFSDHAGTEVGSDLIVLQRNNKNILPSQRQQNFIE 313

Query: 427 AT---------DLWTSIRNEGKKRRII-------------NDDQRRQILDIYVSRENGKF 464
           +          +L+       + R  I             ++     I           F
Sbjct: 314 SRKLSNGISINNLFRDFNRVIQTRSKIDTDPYGKPAIVFTHEGGIDGIAKDLRQMLKEDF 373

Query: 465 SRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
           S+ LD + +     + L  L+    + +     +E      K    +     D+  P ++
Sbjct: 374 SQHLDLQRYQSHAQESLAQLQSRIEVTEAIKPAIEIKPEQSKQQQTYSGTLFDMDDPAIK 433

Query: 525 Q 525
           +
Sbjct: 434 K 434


>gi|253578091|ref|ZP_04855363.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850409|gb|EES78367.1| superfamily II DNA and RNA helicase [Ruminococcus sp. 5_1_39BFAA]
          Length = 2587

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 110/407 (27%), Gaps = 80/407 (19%)

Query: 51   TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
             +    +K L    + +  E   +      +N        +        +      F +N
Sbjct: 967  EKIGYIQKLLEQEKTELLPEEKTEAPAVDRHNF------RINDDAIG--VGGAKEKFRNN 1018

Query: 111  AKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSNIYEHLI-R 164
              AI    + +  + +A  E+  +L +    + G+ +  D            +Y  L   
Sbjct: 1019 MAAINLLHELEIENRLATPEEQEVLSQYVG-WGGLSMAFDEHNAAWAEEFKELYASLSPE 1077

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + + +      F TP  V+      L          S G    + +P+CGTG F     
Sbjct: 1078 EYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGTGNFFGLLP 1129

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              +               HG E++  T  +              +     NI       K
Sbjct: 1130 ESMQ----------NSKLHGVEIDSLTGRIAK------------QLYQKANIAIE-GFEK 1166

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                   F   L N PFG+    D     ++    +                        
Sbjct: 1167 TNLPDDHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------------FFA 1206

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG    + S   +          E+R+++ +   +   + LP + F     T
Sbjct: 1207 KALDKVRAGGVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFKANAGT 1261

Query: 402  NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
             + + + IL        R +V  I    +       G        + 
Sbjct: 1262 EVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 1302


>gi|226950520|ref|YP_002805611.1| modification methylase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|226843643|gb|ACO86309.1| modification methylase family protein [Clostridium botulinum A2
           str. Kyoto]
          Length = 577

 Score = 51.5 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 59/329 (17%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y   I+
Sbjct: 2   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT--- 221
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 53  -----GIKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103

Query: 222 -----DAMNHVADCGSHHKIPPILVPHGQELEPETH------AVCVAGMLIRRLESDPRR 270
                    ++ +    + I        + +            + +  ++I  L      
Sbjct: 104 FYLKNIFEENLKEINKKNNINLEKQYISKHILDNNLYGFDIDTIAIKILII-DLFYLTGY 162

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
               N ++   L +D+     F   + NPP+         +V+KE+      ++G     
Sbjct: 163 YNKNNFKKKDFLIEDI--NNNFDIYIGNPPY-----VGHKSVDKEYSMLLKRKYGYVYKD 215

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
             D S  F ++  N      N   +   + S   + +         +R++L EN  I  I
Sbjct: 216 KGDISYCFFINALN----YSNINSKITFITSRYFMESKSGH----NLRKYLKENCNIYKI 267

Query: 391 VALPTDLFFR------TNIATYLWILSNR 413
           +      F+         I   +  +   
Sbjct: 268 LD-----FYGIRPFKAVGIDPAIIFIDRN 291


>gi|167760883|ref|ZP_02433010.1| hypothetical protein CLOSCI_03271 [Clostridium scindens ATCC 35704]
 gi|167661486|gb|EDS05616.1| hypothetical protein CLOSCI_03271 [Clostridium scindens ATCC 35704]
          Length = 2488

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 68/254 (26%), Gaps = 61/254 (24%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + + +      F TP  V+                       T+ +P+CGTG F    
Sbjct: 1267 EEYRAAMESTLTAFYTPPVVIKAMYE--------ALDHMGFSGGTILEPSCGTGNFFGLI 1318

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             + +               HG E++  T  +              +     +I       
Sbjct: 1319 PDRM----------AGSTLHGVEIDSLTGRIAK------------QLYQKASIAIE-GFE 1355

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHL 342
            +       F   + N PFG                    R+        +    L   + 
Sbjct: 1356 QTKLPDDHFDVIVGNVPFG-------------DFKVNDSRY--------NAQKFLIHDYF 1394

Query: 343  ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399
              K       GG  A + S   +          E+R+++ +   +   + LP + F    
Sbjct: 1395 FVKALDKVRSGGVVAFITSKGTMDKTSP-----EVRKYIAQRAELLGAIRLPDNTFRANA 1449

Query: 400  RTNIATYLWILSNR 413
             T + + +  L  R
Sbjct: 1450 GTEVTSDILFLQKR 1463


>gi|153815158|ref|ZP_01967826.1| hypothetical protein RUMTOR_01383 [Ruminococcus torques ATCC 27756]
 gi|145847726|gb|EDK24644.1| hypothetical protein RUMTOR_01383 [Ruminococcus torques ATCC 27756]
          Length = 286

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 72/249 (28%), Gaps = 45/249 (18%)

Query: 92  GSTNTRNNLESYIASFSDNAK--AIFEDF------DFSSTIARL---EKAGLLYKICKNF 140
            + + +          +   +   ++ DF        S+ + +    E+     KI K +
Sbjct: 52  KNEDIKKQFLKTFNQLTYQHRSWDVWRDFIIMFACSLSNPVDKFHYEEREKRYLKIIKKY 111

Query: 141 SGIE-------------LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +  E                +      + +I+  L     +   +    F TP  V  L 
Sbjct: 112 NKREQEQFPELAAYVVMALEENPEQDFLGSIFMEL-----NLGDKSNSQFFTPYHVCELM 166

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQ 245
             +    +D +         T+ D  CG G  L  A+N          +          Q
Sbjct: 167 AKV--TEEDVVAVVKEKGYITINDSCCGAGATLIAAINEARKQLEKVNLNFQNHVLVVAQ 224

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
           +++     +C   + +  +        +  I+ G   ++ + T         N  F   +
Sbjct: 225 DIDEIVALMCYIQLSLLGV--------AAYIKVGDVFTQPMSTDDNGE----NYWFTMMY 272

Query: 306 EKDKDAVEK 314
             D   + +
Sbjct: 273 FSDVWTMRR 281


>gi|121605739|ref|YP_983068.1| hypothetical protein Pnap_2846 [Polaromonas naphthalenivorans CJ2]
 gi|120594708|gb|ABM38147.1| hypothetical protein Pnap_2846 [Polaromonas naphthalenivorans CJ2]
          Length = 83

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 87  SLSTLGSTNTRN----NLESYIASFSDNAKAIFEDFDFSSTIARL 127
           +L  L S  +      + E Y+  FS N   I E+F F + ++ L
Sbjct: 36  TLRDLKSRGSHQQLLADFEDYLNGFSPNVLDILENFKFRNQLSTL 80


>gi|312114179|ref|YP_004011775.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219308|gb|ADP70676.1| N-6 DNA methylase [Rhodomicrobium vannielii ATCC 17100]
          Length = 253

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 32/132 (24%)

Query: 153 RVMSNIYEHLIRRFGSE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             +  IYE                 + +P  +  +   +L         +S     ++ D
Sbjct: 89  DHLGEIYE------AEGGSERAMSQYFSPMPLCRMMAFML-------IDDSTPERASIAD 135

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P CG+G  L               + P     G +L+     +    +L R ++S     
Sbjct: 136 PACGSGRMLMAC----------IPLRPQGYFFGVDLDRTCAKMAALNLLWRNVDST---- 181

Query: 272 LSKNIQQGSTLS 283
               I  G TL 
Sbjct: 182 ----IIWGDTLR 189


>gi|159030874|emb|CAO88553.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 667

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 59/200 (29%), Gaps = 22/200 (11%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +       + ++   YE  +  +  ++ E    + TP  VV      + +     F + 
Sbjct: 330 TDFRNKMNREDIVIRFYEDFLAAYKPQMREKRGVYYTPEPVVSYIVRSVDELIKDKFNKP 389

Query: 203 PG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHH-----------------KIPPILVP 242
            G       + DP CGTG FL      +      +                     +   
Sbjct: 390 LGIADPEVMILDPACGTGTFLLWVFQLIHKRFEENPVALTAGLADKSWSGYVSERLLPRI 449

Query: 243 HGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
            G EL    +A+C    G+ +              +   +TL       ++    L+ P 
Sbjct: 450 FGFELLMAPYAICHLKLGLFLEETGYQFASGKRLGVYLINTLEDIKLREEKQQLTLALPQ 509

Query: 301 FGKKWEKDKDAVEKEHKNGE 320
             +   ++  A  +  KN  
Sbjct: 510 MEELIAEEAKAGSRIKKNEP 529


>gi|18311571|ref|NP_563505.1| site specific DNA-methyltransferase [Clostridium perfringens str.
           13]
 gi|18146255|dbj|BAB82295.1| probable site specific DNA-methyltransferase [Clostridium
           perfringens str. 13]
          Length = 494

 Score = 51.1 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 70/246 (28%), Gaps = 50/246 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G   TL+DP CG           + D  
Sbjct: 23  REIGYYATPPFVARYIGKRIID--------INGKGETLFDPCCG--------KEELTDYF 66

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S   I  I                   ++  +            I    +       G  
Sbjct: 67  SDLGIKTIG----------------MDLIKYKNNYICEFKKGNFINYYCSQKNTKTWG-- 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+           ++  KN        GL    +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMSAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S  F  +       +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGAVIGLITNDSF-FTAKNH---KRLRNKILRECSIHEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKT 415
           L   K 
Sbjct: 215 LRKGKE 220


>gi|331091942|ref|ZP_08340774.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
 gi|330402841|gb|EGG82408.1| hypothetical protein HMPREF9477_01417 [Lachnospiraceae bacterium
            2_1_46FAA]
          Length = 2591

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 109/371 (29%), Gaps = 75/371 (20%)

Query: 54   AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            AV +K        I  +        +F      +   LG  + +      I + S     
Sbjct: 937  AVPKKQNQTKEDTIPQQKEHAEERNNF----RITDDALGIGSPKEKFRGNIEAIS----- 987

Query: 114  IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR-----RFGS 168
            + +  +  + +A  E+  +L +    + G+    D   +   S  Y+ L        +  
Sbjct: 988  LLKKLEAENHLATAEEQEILSRYVG-WGGLSAAFDDRKE-EWSQEYQELKSLLSESEYKE 1045

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              S     F TP  V+     +L          S G    + +P+CG G F+      + 
Sbjct: 1046 ARSSTLNAFYTPPTVIKAMYQIL-----ENMGLSTG---NVLEPSCGVGNFMGLVPESM- 1096

Query: 229  DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                       +  +G EL+P +  +               +   KN  +     K  + 
Sbjct: 1097 ---------QNIQMYGVELDPISGKIA-------------GQLYQKNRIKVKGFEKTEYP 1134

Query: 289  GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
               F   + N PFG     D+                         S++   +   K   
Sbjct: 1135 ESFFDCVIGNVPFGNYQVSDRKY--------------------DKYSLMIHDYFIVKSLD 1174

Query: 349  PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIAT 405
                GG  A++ SS  +          ++R    E   +   + LP + F     T++ +
Sbjct: 1175 LIRPGGVVAVITSSRTM-----DKESEKVRLQFAEKADLLGAIRLPENAFRKNAGTDVVS 1229

Query: 406  YLWILSNRKTE 416
             +     R   
Sbjct: 1230 DILFFQKRDRA 1240


>gi|301513523|ref|ZP_07238760.1| putative restriction-modification protein [Acinetobacter baumannii
           AB058]
          Length = 128

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 14/136 (10%)

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATY 406
                GGR A+V+    LF          +R++L EN  ++A+V+LP ++F     + T 
Sbjct: 2   KATKKGGRMALVVPEGFLFKAALAP----VRKYLFENAQLKAVVSLPKEVFLPYAKVKTN 57

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           +   +N         V   N T+   S+ +    RR I+++  + +        +   S 
Sbjct: 58  ILYFTNCHNGRTNSDVFYYNVTNDGLSLDSF---RRKIDENDLKNL-----DFADLNKSD 109

Query: 467 MLDYR-TFGYRRIKVL 481
              Y    G+ ++   
Sbjct: 110 FDKYYNELGFLKVNPE 125


>gi|227544177|ref|ZP_03974226.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300908172|ref|ZP_07125638.1| adenine-specific methyltransferase [Lactobacillus reuteri SD2112]
 gi|227185849|gb|EEI65920.1| adenine-specific methyltransferase [Lactobacillus reuteri CF48-3A]
 gi|300894599|gb|EFK87955.1| adenine-specific methyltransferase [Lactobacillus reuteri SD2112]
          Length = 277

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 44/267 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  +IR+   + +       TP  +  +   L+              I+T++DP  GT  
Sbjct: 26  FLKVIRKDAIQANHQM----TPDTIGLIMAFLI------EKVTKIKEIKTVFDPAVGTAN 75

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT  MN +            +V +G + + +   V      ++ L        +     
Sbjct: 76  LLTTVMNQLK-----VNGDKDIVGYGIDNDEDMLGVASVNTELQHLNVKLYHQDAVT--- 127

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                       +    +S+ P G            E+      R   G    S    L 
Sbjct: 128 -------ALDISQCDLAISDLPIGY-------YPLDENAKNYQTRAKEGH---SYVHHLL 170

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    N L+      G   + L  S LF  +         +W+     ++ ++ LP +LF
Sbjct: 171 IEQSMNYLKP-----GAFGVFLVPSSLFQTKESQS---FVKWIQSVAYLQGLINLPAELF 222

Query: 399 FRTNIATYLWILSNRKTEERRG-KVQL 424
              N    + +L  +  + ++  KV L
Sbjct: 223 ANPNAQKSILLLQRQGGDSKQAVKVLL 249


>gi|227539388|ref|ZP_03969437.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240701|gb|EEI90716.1| helicase domain protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1748

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 68/315 (21%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  I                  ++     L++    +  +               F TP
Sbjct: 49  VLNPIENKIDINHWRKTEHDLFPLTQELHQLLKENSEDDKQYRRYVDSMKSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V+   ++ L D            I    +P+ G G F+                   +
Sbjct: 109 PKVIDAISSALRDNGLH--------IDKFLEPSAGIGSFIQSFSE---------NQTASV 151

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNP 299
             + ++             L+   +   +     NI+  +   +        +    SN 
Sbjct: 152 TAYEKD-------------LLTG-KILKQLYPDSNIRI-NGFEEIPEREQNSYDIIASNI 196

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG     D       +   E           S  +  FL     K       GG  A +
Sbjct: 197 PFGDTSVFDLSYSRSRNSAKEQ-------AARSIHNYFFL-----KGADMLREGGLLAYI 244

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTE 416
            S   L + +       IRR L++++ + ++V LP +LF     T + + L IL     +
Sbjct: 245 TSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAK 300

Query: 417 ERRGKVQLINATDLW 431
           +      L +  DL+
Sbjct: 301 KN-----LTDREDLF 310


>gi|282897493|ref|ZP_06305494.1| DNA modification methyltransferase-related protein [Raphidiopsis
           brookii D9]
 gi|281197588|gb|EFA72483.1| DNA modification methyltransferase-related protein [Raphidiopsis
           brookii D9]
          Length = 953

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 78/265 (29%), Gaps = 65/265 (24%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT-PRDVVHLATALLLDPDDALFKESPG-- 204
             V   +   ++E  + +   E         T P D+  +    +L P       +    
Sbjct: 281 SKVEPAIFGTLFESSMGK---EERHALGAHYTNPADIQKVVLPTILRPWQQRIDAATKLN 337

Query: 205 ---------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP------------------ 237
                    +   + DP CG+G FL  A   +    ++                      
Sbjct: 338 ELLALRQELINFKVLDPACGSGNFLYVAYREIKRLEANLLNKIHENFSLRSISNIGTLSL 397

Query: 238 -PILVPHGQELEPETHAVCVAGMLI----------RRLESD------------PRRDLSK 274
                 +G +++P    +    ++I          + +               P  +L +
Sbjct: 398 VKTNQFYGIDIKPFAVELAKVTLMIAKKLALDEENKLINVAQMSLPLELDQALPLDNLDQ 457

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           NI+    L  D     +    + NPP+  K +  ++  E  + +    R+   +P     
Sbjct: 458 NIRCDDALFCDW---VKADAIIGNPPYQSKNKMQQEYGED-YVSQVRERYKE-VP--GRA 510

Query: 335 SMLFLMHLANKLELPPNGGGRAAIV 359
                ++   +     + GGRA + 
Sbjct: 511 DYC--VYWFRRTHDELSKGGRAGLF 533


>gi|288801314|ref|ZP_06406768.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288331697|gb|EFC70181.1| conserved hypothetical protein [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 588

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 96/295 (32%), Gaps = 28/295 (9%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E   LL +           P T+ D  M +++E +I               TP+ V    
Sbjct: 52  EDFDLLQEFVSKIHHFHPAPMTIED--MISLFEFVI---SPADRIVTGAVYTPKYVRENI 106

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQE 246
               L   +   +        + D  CG GGFL +    + +              +G +
Sbjct: 107 IETCLKIPNEHLQH-----IRVADIACGCGGFLMNVALFLHNNTGRSFYDIYQESVYGID 161

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFG 302
           ++  +       + +  L      D   NI Q +TL+ +          F   + NPP+ 
Sbjct: 162 IQEYSVERTKILLSLLALLHGEDLDFDFNILQANTLNFNTTEWNQDYTHFDVIVGNPPYV 221

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                D    EK  +      +   L   SD  + F       L    N GGR   +  +
Sbjct: 222 CSRNVDATTKEKMLQ------YEVCLSGHSDLYIPFFQIATEML----NDGGRLGFITMN 271

Query: 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           S + +    +  +   R + +  +++        +F + +  T L+ L+  +  +
Sbjct: 272 SFIRSVNGRAVRNYFSRGIHDISILD---FRGYQVFQKKSTYTCLFFLTKNQASD 323


>gi|124004979|ref|ZP_01689822.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
 gi|123989657|gb|EAY29203.1| N-6 DNA Methylase family [Microscilla marina ATCC 23134]
          Length = 504

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 88/258 (34%), Gaps = 29/258 (11%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +      TP  +V          DD  +     + + + DP+CG G FL + +  +  
Sbjct: 10  EEKLLGKVYTPAFIVEKIL------DDVGYIGKRILGKKILDPSCGDGQFLKEIVKRILK 63

Query: 230 CGSHHKI---PPILVPHGQELEPETHAVCVAGMLIR----RLESDPRRDLSK--NIQQGS 280
                K      +    G +++ E   +C++ +        +    +       NIQ  +
Sbjct: 64  ESPSDKEAILENLSKVRGMDIDEEAIKICISDLNKLVEPYGINFPSKNVSKFDWNIQSEN 123

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TLS+     +RF + + NPP+ +        + +E +     R+       +D  + F  
Sbjct: 124 TLSQIDKGRERFEFIVGNPPYIRIQH-----LSEEDRYLIQTRYEFCKSGSTDTYIAFFE 178

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFF 399
           +   KL       G   ++  ++  +          +R + +    I+ I       LF 
Sbjct: 179 YCQKKLSK----NGICGLITPNTFFYTETGRI----LRSYFINERKIKQITNYKDIQLFD 230

Query: 400 RTNIATYLWILSNRKTEE 417
                + + I   ++ + 
Sbjct: 231 DATTYSAITIFDRKQNDS 248


>gi|302387900|ref|YP_003823722.1| helicase domain protein [Clostridium saccharolyticum WM1]
 gi|302198528|gb|ADL06099.1| helicase domain protein [Clostridium saccharolyticum WM1]
          Length = 2632

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 64/217 (29%), Gaps = 51/217 (23%)

Query: 208  TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
             + DP  GTG F +   + +               +G E++P    +             
Sbjct: 975  NILDPALGTGNFFSVLPDSMESSK----------LYGCEIDPIPGQIAK----------- 1013

Query: 268  PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 + +IQ      K  F    F   + N PF      D    +      +       
Sbjct: 1014 -HLYPNADIQVM-GFEKTAFPDHFFDMMVGNVPFNSIKVDDPRYNKHNFHIHDY------ 1065

Query: 328  LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                      F+    +K+      GG  A+V S   +         S +RR++     +
Sbjct: 1066 ----------FIAKSLDKVRP----GGMMALVTSKFTM-----DKANSSMRRYIAGKAEL 1106

Query: 388  EAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
               V LP + F     T   T + +L  R+ E    +
Sbjct: 1107 IGAVRLPNNAFKQVAGTEATTDILLLKKREREIVPDE 1143


>gi|298345571|ref|YP_003718258.1| methylase [Mobiluncus curtisii ATCC 43063]
 gi|298235632|gb|ADI66764.1| methylase [Mobiluncus curtisii ATCC 43063]
          Length = 949

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 57/242 (23%), Gaps = 66/242 (27%)

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
           DF+  +    L     L  +    S        +   +   I+E  +     E       
Sbjct: 274 DFEIPNFSPEL-----LGLLLDEVSRAVDW-SQISPTIFGGIFESTL---NPETRRAGGM 324

Query: 177 FMTPRDVVHLATALLL----------DPDDALFKESPGMI-----------RTLYDPTCG 215
             T  + +H     L             D                          DP  G
Sbjct: 325 HYTSPENIHKVIDPLFLDDLKAELQAIGDAEGLTPRQRTNRYRAFHERLCKMRFLDPASG 384

Query: 216 TGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEPETHAVC 255
           +G FLT+    +                                   +G E+      V 
Sbjct: 385 SGNFLTETYLQLRHLEDEVLSRLNAGQTAFSLAEVGASVTRVSLDQFYGIEINDFAVKVS 444

Query: 256 ---------VAG----MLIRRLESDPRRDLSKNIQQGSTLSKDL---FTGKRFHYCLSNP 299
                     A     ML+   + D     S +I Q + L+ D        +  Y L NP
Sbjct: 445 EAALWISRLKANGETEMLLALGDDDFPLRESAHIVQANALTLDWNTVLPADQCSYVLGNP 504

Query: 300 PF 301
           PF
Sbjct: 505 PF 506


>gi|294155434|ref|YP_003559818.1| hypothetical protein MCRO_0145 [Mycoplasma crocodyli MP145]
 gi|291600020|gb|ADE19516.1| conserved hypothetical protein [Mycoplasma crocodyli MP145]
          Length = 476

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 29/242 (11%)

Query: 206 IRTLYDPTCGTGGFLTDAMN-HVADCGS------HHKIPPILVPHGQELEPETHAVCVAG 258
            + + D +CG G FL + +  ++ +           K       HG E++ E    C+  
Sbjct: 39  KKHVIDNSCGDGRFLEEIVKTYIKEFFKIDNDLIKLKNQLEHFIHGIEIDLEECKKCINN 98

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           + +  ++     +++ +I    TL  +++TG +  + L NPP+ +    D          
Sbjct: 99  LNL-IIKEYNIDNVNWDIIVADTLDTNIYTG-KMDFVLGNPPYVRVHNFD-----DRFSK 151

Query: 319 GELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            +  RF     K     +  LF     N L             ++ S +FN  AG    E
Sbjct: 152 IKNKRF----TKKGMTDLFILFYEIGLNMLNEKGVL-----CYITPSSIFNSFAG---LE 199

Query: 377 IRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
            R+++++  L+++++      +F   +  T +  L    T+E        +    +  I 
Sbjct: 200 FRKFIIQKKLLKSVIDYKHYQVFESVSTYTTILKLDKNNTDENINYFSYNDHNQQYDFID 259

Query: 436 NE 437
             
Sbjct: 260 KL 261


>gi|317153587|ref|YP_004121635.1| hypothetical protein Daes_1879 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943838|gb|ADU62889.1| hypothetical protein Daes_1879 [Desulfovibrio aespoeensis Aspo-2]
          Length = 1036

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 117/433 (27%), Gaps = 118/433 (27%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLY-----KICKNFS 141
           +L  L    T + L   +           + F + S + RL     L       + +   
Sbjct: 273 NLKNLDGLATFDGLMDSLRRA--------DQF-YDSGLFRLVDNDPLGIRISDDVLQGII 323

Query: 142 GIELHP------DTVPDRVMSNIYEHLIRRFGSEVS------------EGAEDFMTPRDV 183
               +P        V  +V+  IYE  +                    E      TP  +
Sbjct: 324 AELYYPLSPYTFAVVETKVLGEIYEQFLGEVIIVAGSTIEIESKPEVRESGGVVPTPSFI 383

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG------------ 231
                A  L P  A       +  T+ D  CG+G FL  A +++                
Sbjct: 384 ADTIVARTLGPLLAGKSPEELLHFTVADICCGSGIFLLSAYDYLLGHYLDWYVAGGPGKH 443

Query: 232 -----------------SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
                               +   +    G +++P    +    +L++ +E +    L +
Sbjct: 444 AGRTIYQVGKNLWRLTFDEKRRILLAHMRGVDIDPNAVEIAQFSLLLKLIEDESEAALEE 503

Query: 275 ---------------NIQQGSTL-----------------------------SKDLFTGK 290
                           I+ G++L                               D     
Sbjct: 504 YVRRMKHAALPALDDYIRCGNSLVSTAEWEAACGPLPAMLHDAINPFGWEEEFADEMADG 563

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLEL 348
            F   + NPP+  + +       +E +            +  +     LF+      ++ 
Sbjct: 564 GFDVVVGNPPY-IRIQNMVAYSAQEVEFYHTTNAPYSTAQQDNFDKYALFIERALGLIKD 622

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI--ATY 406
                GR  +++ +  +           +R  L  + ++E IV   +   F   I   T 
Sbjct: 623 ----NGRLGVIVPNKFM----TIRSGRALRGLLTRSPILEYIVHFGSKQVFGQGITNYTC 674

Query: 407 LWILSNRKTEERR 419
           + ++     E+ R
Sbjct: 675 ILVMDRSGHEQVR 687


>gi|317009316|gb|ADU79896.1| hypothetical protein HPIN_03300 [Helicobacter pylori India7]
          Length = 1067

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 85/308 (27%), Gaps = 36/308 (11%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +N+++ IA   D                 L+    LY+  K    +          ++ 
Sbjct: 261 GDNIQNPIAKALDKMVQKLATLGLEGETKDLKN---LYESVKT-EALHAKSQKSQQELIK 316

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
           N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 317 NLYNTFFKVAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 376

Query: 216 TGGFL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TG F+    +  +        K          ++   ++ + +  +       D      
Sbjct: 377 TGSFIARLLSKENALISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSSLKFF 436

Query: 274 KNIQQGSTL-----------------------SKDLFTGKRFHYCLSNPPF--GKKWEKD 308
           KNI    +L                        KD    +     + NPP+  G K E D
Sbjct: 437 KNIALTDSLDFYEEKNDKGVFAFFEDLKENKEIKDTLADQNIRVIIGNPPYSAGAKSEND 496

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSML----FLMHLANKLELPPNGGGRAAIVLSSSP 364
            +      +  +  +   G    S  +       L+             G    V++ S 
Sbjct: 497 NNQNLSHPELEKRVKEKYGKNSSSKNNGGTTRDTLIQSIYLASELLKDKGVLGFVVNGSF 556

Query: 365 LFNGRAGS 372
           + +  A  
Sbjct: 557 IDSKSANG 564


>gi|256960869|ref|ZP_05565040.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256951365|gb|EEU67997.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 2586

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 68/253 (26%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S  S       T   V+      +          +PG   T+ +P+ G G F    
Sbjct: 1026 GEYQSAQSTVLNAHYTSPTVIQAIYNAV-----EQMDFTPG---TVLEPSMGIGNFFGML 1077

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +A              +G EL+  T  +              +     +I       
Sbjct: 1078 PEKLAAAK----------LYGVELDDLTGRIAR------------QLYQKADITV-DGFE 1114

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG     DK    +                    +++   +  
Sbjct: 1115 RTDHPDDFFDLAVGNVPFGSYQVHDKRYDRQ--------------------NLMIHDYFI 1154

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A + +   +         S+ R  L +   +   V LP++ F     
Sbjct: 1155 TKTLDKVRPGGIVAFITTKGTM-----DKKNSKAREALAQKADLLGAVRLPSNAFKANAG 1209

Query: 401  TNIATYLWILSNR 413
            T + T +     R
Sbjct: 1210 TEVTTDILFFQKR 1222


>gi|304386986|ref|ZP_07369244.1| methylase [Neisseria meningitidis ATCC 13091]
 gi|304338943|gb|EFM05039.1| methylase [Neisseria meningitidis ATCC 13091]
          Length = 270

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 35/139 (25%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250
              DP CG G FL  A + +                            +   HG E++  
Sbjct: 88  QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147

Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295
           T  +    M ++  + + R                + +  I   ++L       +   Y 
Sbjct: 148 TVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAEIIHANSLRTPW---QAADYI 204

Query: 296 LSNPPFGKKWEKDKDAVEK 314
             NPPF     + K+    
Sbjct: 205 FGNPPFIGSTYQTKEQKND 223


>gi|237727382|ref|ZP_04557863.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|255008834|ref|ZP_05280960.1| type I restriction enzyme, M subunit [Bacteroides fragilis 3_1_12]
 gi|313146578|ref|ZP_07808771.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|229434238|gb|EEO44315.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|313135345|gb|EFR52705.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 239

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 31/177 (17%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                +Y     + G + +     F TP  +  L         +          + + DP
Sbjct: 85  DAFGELYMAYCSKPGQQAN---GQFFTPSHICELMVMCAAGKKET--------GQRMGDP 133

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     H           P     G+++      + V  ML+     +     
Sbjct: 134 TCGSGRLLLAYHAH----------NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH- 182

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328
                   +L    FT   +    + P  G    +     E  +   E  GRF   +
Sbjct: 183 -------DSLQPKAFTDG-WKVNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231


>gi|254414560|ref|ZP_05028326.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
 gi|196178790|gb|EDX73788.1| N-6 DNA Methylase family [Microcoleus chthonoplastes PCC 7420]
          Length = 1047

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 97/340 (28%), Gaps = 66/340 (19%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKA-GLLYKICKNFSGIELHPD----TVPDRVM 155
            +YI + +   K +F     +  +++++ A   L ++        +  +    T  D  +
Sbjct: 239 GTYIPATNPFLKRLFNTIVETDAVSQIDWAIDDLVQLLAQVDMSSILENFGQRTRQDDPV 298

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK------------ESP 203
            + YE  +  +   + +    + TP  VV      +       F             ++ 
Sbjct: 299 VHFYETFLAAYNKALRKSRGVYYTPEPVVSFIVRSVDAILKERFNLPLGLADNTKDPKTQ 358

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQELEPETHA 253
                + DP  GTG FL + +  +        +                 G EL    +A
Sbjct: 359 KPRVQILDPATGTGTFLYEVIKQIYRNLEDIGMANQWDSYVEENLLNRLFGFELLMAPYA 418

Query: 254 VC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT---------------------GK 290
           +     G+ ++ L    +      I   +TL + L                         
Sbjct: 419 IAHLKLGLALQELGYQFKGKQRLGIYLTNTLDEALKKSEILFGQFVAQEANEASTVKQDT 478

Query: 291 RFHYCLSNPPFGKKWEKDKDAVE---KEHKNGELGRFGPGLPKISDGSML----FLMHLA 343
                L NPP+  +       +    +++   +        PK      +    F     
Sbjct: 479 PVMVVLGNPPYSYESLNTGKWISGLVRDYYKVDNKDLREKNPKGLQDDYVKFIRFAQWRI 538

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   G G  A + +   L      S    +R+ L++
Sbjct: 539 -----ETTGYGILAFITNHGYL----KNSTFRGMRQNLMQ 569


>gi|146283521|ref|YP_001173674.1| hypothetical protein PST_3196 [Pseudomonas stutzeri A1501]
 gi|145571726|gb|ABP80832.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 1242

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 68/263 (25%), Gaps = 66/263 (25%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA- 113
           V   Y           +    A   F N   +         T   L  Y+  FS NAK  
Sbjct: 345 VDTLYRYEDHFLDSDTALEHFADVPFLNGGLFECLDHIEDGTNKKL--YLDGFSRNAKKR 402

Query: 114 --IFEDFDFSSTIA------------RLEKAGLLYKICK--NFSGIELHPDTV----PDR 153
             I     F                 + EK   L  I     F+ +E  P          
Sbjct: 403 PTIPNRLFFGGEHEEDLSGAYGDKKRKKEKVRGLLHILHAYKFTIVENTPVDQEIALDPE 462

Query: 154 VMSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATA---------LLLDPDDALFK 200
           ++  ++E+L+  +  E      +    F TPR +V              +L+  D     
Sbjct: 463 LLGKVFENLLASYNEETKTTARKQTGSFYTPRPIVEYMVDESLKSHFTGMLVKADMNEQD 522

Query: 201 ESPGM--------------------------IRTLYDPTCGTG----GFLTDAMNHVADC 230
              G+                             + DP CG+G    G L   +  +   
Sbjct: 523 AKTGLDILFAYTEQRLTFTEKQIAKLLNAIHTCKILDPACGSGAFPMGILHKLVYIIHRL 582

Query: 231 GSHHKIPPILVPHGQELEPETHA 253
              +     +        P++ A
Sbjct: 583 DPDNSRWKQIQIDAAAKIPDSSA 605


>gi|222087283|ref|YP_002545820.1| DNA methylase [Agrobacterium radiobacter K84]
 gi|221724731|gb|ACM27887.1| DNA methylase [Agrobacterium radiobacter K84]
          Length = 546

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 37/279 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              +     +Y  +I             + TP  + +    +  D    + K        
Sbjct: 72  HDRNYWRGTLYTLMI---SPADRRAQAAYFTPPYLANAVIDMASDHGFDIRKHD------ 122

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + DP  G   FL+   + +   G   K       +G E++     +      +  +    
Sbjct: 123 VLDPAAGGAAFLSLIADRMHRAGV-PKKDIANRLNGIEIDE---RLARMSEFL--IAEQL 176

Query: 269 RRDLSKNI-QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
               S+ I + G ++     T + +   ++NPP+G+    +                   
Sbjct: 177 EGFRSRQIVRVGDSIQ--AKTDESYDLVIANPPYGRMRPDELAEKIWGKVAYRNHINKYA 234

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           +         F       ++     GG  A+V+ SS  F G        +R ++     I
Sbjct: 235 V---------FAELCLRVVKT----GGLVALVIPSS--FRGGPLY--DRMRSYVASQGQI 277

Query: 388 EAI--VALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
            A+  V    D+F        + ++        + +V+ 
Sbjct: 278 LALGTVTNREDVFADVAQDVSVLLVRRGAPHLTKQRVKF 316


>gi|126666547|ref|ZP_01737525.1| putative DNA methylase [Marinobacter sp. ELB17]
 gi|126628935|gb|EAZ99554.1| putative DNA methylase [Marinobacter sp. ELB17]
          Length = 764

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 100/346 (28%), Gaps = 81/346 (23%)

Query: 130 AGLLYKICKNFS------GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           A  L    +           +        R + ++Y+ L       V +      TP  V
Sbjct: 159 AKRLIDFFQQIDPQTGDIKQDFTDPEWDTRFLGDLYQDL----SESVRKRYALLQTPEFV 214

Query: 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIP 237
                   L+P    F         L DPTCG+G FL      V       + G++ +  
Sbjct: 215 ESFILDYTLEPAIETFGL---PGLRLIDPTCGSGHFLLTTFERVFERWLKREPGTNTRKL 271

Query: 238 PILVP---HGQELEPETHAVCVAGMLIRRLESDPRRDL------SKNIQQGSTLSK---- 284
                   HG ++ P   AVC   +LI  +++     +        ++  G +L      
Sbjct: 272 AQRALDVVHGVDINPYAIAVCRFRLLIAAMKAAGSDRVKDAPKFEFHLACGDSLLHGRRH 331

Query: 285 ---------------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                                      +   G+R+H  + NPP+    +K  +   +   
Sbjct: 332 EWEGQGDQQDFLGKHQHVYEVEDEQKLNQILGQRYHVVVGNPPYITVKDKVLNQAYRSKY 391

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANK-LEL-PPNGGGRAAIVLSSSPLFNGRAGSGES 375
                ++  G+P        F     +  L        G   ++ ++S +          
Sbjct: 392 LTCHRKYSLGVP--------FTERFFDLTLWPVDNQSAGFMGMITTNSFMKR-------- 435

Query: 376 EIRRWLLE----NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           E  + L+E       +  ++             T +    N+ ++ 
Sbjct: 436 EFGKKLIEVYLPRKNLTHVIDTSGAYIPGHGTPTVILFARNQSSKS 481


>gi|94502002|ref|ZP_01308509.1| hypothetical protein RED65_02033 [Oceanobacter sp. RED65]
 gi|94425878|gb|EAT10879.1| hypothetical protein RED65_02033 [Oceanobacter sp. RED65]
          Length = 246

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 55/175 (31%), Gaps = 16/175 (9%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
              E     +    L  A LL ++        +  +      +  +Y  L        S 
Sbjct: 49  EYLELISKYNKDESLVIASLLGEVI-------IALEGSHSDFLGAVYMEL-----DIGSS 96

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP DV  +    +     +L +E P +  TL +P  G G  +    + +   G 
Sbjct: 97  HIGQFFTPYDVSRMMAKAIYADSFSLLEEKPFL--TLCEPCVGAGSMVIAIADEMLSNGF 154

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           + +    +     +++P    +    + +  + ++     +  ++        + 
Sbjct: 155 NPQNQLWVS--CVDIDPLAARMAFIQLSLLGIPAEVIVGNTLTMKVTEVFRTPMH 207


>gi|300726544|ref|ZP_07059989.1| N-6 DNA Methylase family protein [Prevotella bryantii B14]
 gi|299776175|gb|EFI72740.1| N-6 DNA Methylase family protein [Prevotella bryantii B14]
          Length = 360

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 72/283 (25%)

Query: 156 SNIYEHL------IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
            ++Y +L      + +F    +  A  F  P +   LA+AL+               + +
Sbjct: 140 GDLY-YLQVLDIALSKFS--SNHSAGQFTQPVEFAELASALV-----------ESRGKDI 185

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           Y+P  G   F T    +                 G E +P    + +    +  ++ D  
Sbjct: 186 YNPFSGLMSFATAMKEYA-------------SFTGVERDPFIADISIFRTHLAGIQ-DKA 231

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK--KWEKDKDAVEKEHKNGELGRFGPG 327
             +  +++  S +S D          +S PP G     + +   +  E            
Sbjct: 232 SCIPGDVRDWSKISYD--------IIVSTPPIGVPISVKDENRPIRSE------------ 271

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                              E   N  G     +  S LF+ R      EIR  L E + +
Sbjct: 272 ------------CFCLKNFESLTNDNGVLFTFVVPSVLFDSRRA---REIRHELTEKNYL 316

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +A+++LP +L       + + +L   K  ++   +++++A++ 
Sbjct: 317 DAVISLPANLMRPYTSISLVAVLLK-KGRDKNAPIKMLDASEF 358


>gi|269836309|ref|YP_003318537.1| DNA methyltransferase [Sphaerobacter thermophilus DSM 20745]
 gi|269785572|gb|ACZ37715.1| DNA methyltransferase [Sphaerobacter thermophilus DSM 20745]
          Length = 1102

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 89/313 (28%), Gaps = 66/313 (21%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            LL +  +      +   +  D  +   YE  +  +  ++ +    + TP  VV     L
Sbjct: 286 DLLERTIEAVDPAAIRGKSDTDPWL-YFYEDFLAVYDPKLRDERGVYYTPAQVVKAQVTL 344

Query: 191 LLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADC---------GSHHKIPP 238
           + +          G      T+ DP  GTG +L   + H  +                  
Sbjct: 345 VDELLRTKLNRPLGFADPDVTVLDPATGTGTYLLRVLQHGIERATAIYGPGAAGDIASQM 404

Query: 239 ILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH--- 293
               +G EL    +AV    +   I         D   +I    TL          H   
Sbjct: 405 ARNLYGFELLVGPYAVAHLRLAQAIHEFGGREPDDGV-HIYLTDTLESPNEITTLPHSFY 463

Query: 294 ---------------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                                 C+ NPP+    E+++   +     G   RFG  + K +
Sbjct: 464 EKPLAEEHRRAREVKRTTPILVCIGNPPY----EREESDSDDGKTGGRWIRFGDQVTKKA 519

Query: 333 ------DGSM----------------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                 D ++                 F      K+    +G G  + + +SS L     
Sbjct: 520 PLRSFLDPALKAGKALHVKNLYNLYVYFWRWALWKVFEAQDGPGIVSFITASSYLRGPGF 579

Query: 371 GSGESEIRRWLLE 383
                E+RR   E
Sbjct: 580 VGMREEMRRTFDE 592


>gi|253990769|ref|YP_003042125.1| putative phage integrase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211639100|emb|CAR67712.1| Probable phage integrase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782219|emb|CAQ85383.1| Probable phage integrase [Photorhabdus asymbiotica]
          Length = 400

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/176 (11%), Positives = 57/176 (32%), Gaps = 27/176 (15%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS 171
           + I + +       + E      ++ ++   + +  +  P   +  ++  L     +  +
Sbjct: 54  RQIIKHY-------KPEDVSRFSQLLEH---VMMGLEFEPHDFLGGVFMQL-----NLGN 98

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +  + F TP  +      + L          P    TLY+P CG G  +  A   +   G
Sbjct: 99  KHLKQFFTPWPISLAMAKMQLSDVGQRLTRQP--FFTLYEPACGAGCMVIAAAEVLKMSG 156

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +      +     +++    ++    + +  +  +        +  G  L+ +  
Sbjct: 157 YN--PAQHMWVSCVDIDVVAASMAYIQLSLLGIPGE--------VVIGDALTNERH 202


>gi|400282|sp|P25201|MTA1_ACICA RecName: Full=Modification methylase AccI; Short=M.AccI; AltName:
           Full=Adenine-specific methyltransferase AccI
 gi|216197|dbj|BAA01523.1| AccI methylase [Acinetobacter calcoaceticus]
          Length = 540

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 94/303 (31%), Gaps = 60/303 (19%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E  +    F TP  + +     +L             ++T+ +P  G G F    ++   
Sbjct: 24  EHRKKFAQFFTPFPIAYAMAKWILGNKQ---------LKTVLEPAFGLGVFSRAILSQQK 74

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +           +                       +       + NI     +  D   
Sbjct: 75  EINIKAFEVDETIF-------------------ENAKEYFDDFENVNILLQDYMYND--W 113

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             ++   + NPP+ K  + D   + KE +          L   ++   LFL+   ++L  
Sbjct: 114 KNKYDGIICNPPYFKFHDYDNKNILKEIETN----LKCKLNGFTNLYTLFLLKSIHQL-- 167

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIATY 406
             +  GR A ++ S  L +         ++ +L+++  +  I+ +    ++F        
Sbjct: 168 --SQNGRCAYIIPSEFLNSDYG----KLVKTYLIKSKTLRHIIVIDFEENVFDDALTTAS 221

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           + + +N   +    KVQ  N   L    +               +I++ Y +    + + 
Sbjct: 222 IILCAN---DNITDKVQFNNIQSLQDLSK-------------IDEIINKYPNFLETEQTY 265

Query: 467 MLD 469
              
Sbjct: 266 NFS 268


>gi|293556292|ref|ZP_06674877.1| adenine-specific methyltransferase [Enterococcus faecium E1039]
 gi|291601551|gb|EFF31818.1| adenine-specific methyltransferase [Enterococcus faecium E1039]
          Length = 335

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E    +  + +    +   P+         + 
Sbjct: 27  SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 82  QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 136

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 137 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 179

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 180 --FHQDGLQDLLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278

Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435
           +LF        + IL  +  + ++  +V L+    L    +
Sbjct: 279 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 319


>gi|163846419|ref|YP_001634463.1| hypothetical protein Caur_0841 [Chloroflexus aurantiacus J-10-fl]
 gi|222524188|ref|YP_002568659.1| hypothetical protein Chy400_0909 [Chloroflexus sp. Y-400-fl]
 gi|163667708|gb|ABY34074.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448067|gb|ACM52333.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl]
          Length = 1503

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 41/173 (23%)

Query: 151 PDRVMSNIYEHLIRR------------FGSEVS---EGAEDFMTPRDVVHLATALLLDPD 195
               + ++YE L+              F        +    + TP  +VH      L P 
Sbjct: 395 DTEELGSVYESLLDYHPLIGKDCETWSFSLSSGSERKTTGSYYTPPQLVHELVESALQPV 454

Query: 196 DALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239
                ++               + DP CG+G FL  A  ++    +  +           
Sbjct: 455 LEARLKAARTTDAKIAALLRLKVLDPACGSGHFLLAAARYLGRELARLRHSESEPSPDAV 514

Query: 240 ---------LVPHGQELEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTL 282
                       +G +  P    +    + I   + + P   L   I+ G +L
Sbjct: 515 RQSVREVIAHCIYGVDKNPLAVELARVALWIESHDVARPLTFLDHRIKCGDSL 567


>gi|322514192|ref|ZP_08067255.1| endonuclease-methyltransferase fusion protein [Actinobacillus ureae
           ATCC 25976]
 gi|322119932|gb|EFX91938.1| endonuclease-methyltransferase fusion protein [Actinobacillus ureae
           ATCC 25976]
          Length = 1104

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 75/246 (30%), Gaps = 36/246 (14%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            ++REKY      NID++ ++      +Y   +  + +            Y+ S      
Sbjct: 264 DSIREKYG-IVDENIDVKKYLFALQTYYYILIKLLIHSFIKDAVNPQFNIYLLSDIRYVV 322

Query: 113 AIFEDFDFSSTIARLEK------------------AGLLYKICKNFSGIELHPDTVP-DR 153
            +FE  + +  I+   +                     L +I   +       +      
Sbjct: 323 DLFEGKEQNDIISNFFEIHFYEWFTYSEKFDIGIINSTLQEIILKYELASFVLNPESMQD 382

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
           V+  IY  LI      +     ++ TP   V      +    D           + L DP
Sbjct: 383 VLQEIYMGLI---PDNLRHLMGEYFTPDWAVEFVLDKIGFTGDID---------KRLCDP 430

Query: 213 TCGTGGFLTDAMNHVADCGS---HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
           TCG+G FL  A+  + +  +              G ++ P +     A  ++  L     
Sbjct: 431 TCGSGAFLLQAIKRIKNNKTVEISDIQKITNNIVGFDINPISAVSAKANYILALLSYSYE 490

Query: 270 RDLSKN 275
           +    N
Sbjct: 491 KIDEIN 496


>gi|319637664|ref|ZP_07992430.1| hypothetical protein HMPREF0604_00053 [Neisseria mucosa C102]
 gi|317400819|gb|EFV81474.1| hypothetical protein HMPREF0604_00053 [Neisseria mucosa C102]
          Length = 919

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 57/221 (25%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKES 202
             +   +  ++++ +I               T    +  A   L   D       +FK  
Sbjct: 280 SEINPDIFGSMFQSVI---NPAQRSRLGQHYTSVPNIMKAIKPLFLDDFQAAFQDIFKRY 336

Query: 203 PGM---------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-------- 239
           P                    ++DP CG+G FL  A   +                    
Sbjct: 337 PSNEGRLKALYSLSMRLGNIKIFDPACGSGNFLIIAYKELRRLEIEIFKAVKEIDSNAIF 396

Query: 240 ------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGS 280
                    +G EL+   H + +  + +   + +   +                NI+  +
Sbjct: 397 SSQIRLDQFYGIELDDFAHEIAMLSLWLAEHQMNLAHENELGNSLPTLPLKSGGNIKAAN 456

Query: 281 TLSKD-------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           +L +D           +   Y + NPPFG K  ++ +    
Sbjct: 457 SLREDWEAFCPRGKRAEDEVYIVGNPPFGGKQYRNAEQNID 497


>gi|237739043|ref|ZP_04569524.1| type II restriction enzyme [Fusobacterium sp. 2_1_31]
 gi|229423643|gb|EEO38690.1| type II restriction enzyme [Fusobacterium sp. 2_1_31]
          Length = 1088

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 81/320 (25%), Gaps = 96/320 (30%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED- 176
           F     +  L     +++  K  S  +   D   +  + +I+E  I          + + 
Sbjct: 318 FKNDDVLNSLNIDDKVFEELKKISDYDFDSDLNVNI-LGHIFEQSISDIEELKKSISGEE 376

Query: 177 -------------FMTPRDVVHLATALLLDPDDALFKESPGMIR---------------- 207
                        F TP+ +        +       ++  G                   
Sbjct: 377 FDQKKSKRKKDGIFYTPQYITKYIVENSIKNWLDDKRKELGEDDLPKLNEKDYIFDIAKK 436

Query: 208 -----------------------TLYDPTCGTGGFLTDAMNHVADCGS------------ 232
                                   + DP CG+G FL  A   + +               
Sbjct: 437 NYTKNYRKHIEFWQQYREAVRNIKIIDPACGSGAFLITAFEFLLNYNKYLDDKIFDLVGT 496

Query: 233 ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKD 285
                   K        G +L  E+  +    + ++  + +      + NI+ G++L  D
Sbjct: 497 SDLFSDRTKEILQNNIFGVDLNKESVEITKLSLWLKTADKNKTLASLENNIKCGNSLIDD 556

Query: 286 L-----------------FTGKRFHYCLSNPPFGKK------WEKDKDAVEKEHKNGELG 322
                             F    F   + NPP+ K+      +      +  + K     
Sbjct: 557 PEIAGNLAFNWEKEFPEIFANGGFDIVVGNPPYVKEDIGKNAFNGLHQHLCYQGKMDLWY 616

Query: 323 RFGPGLPKISDGSMLFLMHL 342
            FG     IS     ++  +
Sbjct: 617 FFGWLALTISKKEFAYISFI 636


>gi|254884231|ref|ZP_05256941.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837024|gb|EET17333.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1658

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 76/288 (26%), Gaps = 65/288 (22%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            +Y  L++   S V      F TP  ++      +       F  +   + T  +P+ G 
Sbjct: 82  TLYRQLLQSLKSSV---LTAFYTPTFLIQAVAEQI----KDTFTANDLKMGTFLEPSAGI 134

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           GGFL                                      +L   + S    D    I
Sbjct: 135 GGFLPVGDMATHRTAFEK-----------------------DLLTGLVLSALHPDTQVFI 171

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
           +   T+        RF    SN PFG                    R          G  
Sbjct: 172 EGFETIDSQETEHNRFDVIASNIPFG------------------DFRVFDNTFSKKGGIY 213

Query: 337 LFLMHLAN-----KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                  +     K     N GG  A V S           G   +R +L+    +   +
Sbjct: 214 AQASKTIHNYFFLKAVEKLNEGGILAFVTSRGIADT----QGNQFVRDYLVHRCNLITAL 269

Query: 392 ALPTDLFFRTN---IATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
            LP  LF +T+   + + L I           KV L +   L+     
Sbjct: 270 RLPDSLFMQTSGIEVGSDLLIFQKS-----GRKVTLTDREKLFIETTR 312


>gi|237704018|ref|ZP_04534499.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|20068986|gb|AAM09640.1|AF458982_3 m6 adenine DNA methyltransferase [Escherichia coli]
 gi|226901930|gb|EEH88189.1| DNA methyltransferase [Escherichia sp. 3_2_53FAA]
 gi|281181426|dbj|BAI57756.1| methyltransferase [Escherichia coli SE15]
 gi|315286889|gb|EFU46306.1| type II restriction m6 adenine DNA methyltransferase,
           Alw26I/Eco31I/Esp3I family [Escherichia coli MS 110-3]
          Length = 546

 Score = 51.1 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 73/273 (26%), Gaps = 35/273 (12%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +    + T   +  L    LL     L          + DP  G G  +T  +     
Sbjct: 25  TKKATGKYYTDPKIALLMIEKLLP----LINSCDKKSYNVADPFSGDGRLITLLIKQ-WM 79

Query: 230 CGSHHKIPPILVPHGQELEPETHAV-CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                 +   +     E    T+A   ++ + +     +        I+      +    
Sbjct: 80  INGFPDVEWNVYLFDIENTGLTYAKNALSELKLAGANINIT------IKNSDVFYEFKKY 133

Query: 289 GKRFHYCLSNPP-------------FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
              F   ++NPP             F    +       +E  +          PK     
Sbjct: 134 VDYFDCVITNPPWENIKPDSRELDFFEPSMKSMYIDSLREFDDYLSRVLPYSQPKRKFAG 193

Query: 336 MLFLMHLANKLELPP--NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
               +            N  G  AIV+ +S      A      +R     +  I+ I   
Sbjct: 194 WGTNLSRVGAELSLEICNKNGLVAIVMPASFF----ADEQSYILREKFFNSGRIDCINYY 249

Query: 394 P--TDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           P    LF   ++++  +I    K E     +QL
Sbjct: 250 PAEAKLFGGADVSSCSFIF--NKGESLNDNIQL 280


>gi|134287590|ref|YP_001109756.1| hypothetical protein Bcep1808_7092 [Burkholderia vietnamiensis G4]
 gi|134132240|gb|ABO59975.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 333

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 20/103 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y  L        ++ A  F TP  V  L   + +       ++       + +P
Sbjct: 114 DVLGETYMML-----DIGNDRAGQFFTPYCVSRLMAGISIGDRCEAIEQE--GFMRMQEP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
            CG GG +    + +                GQ  +   HA C
Sbjct: 167 ACGAGGMVIATADALLSI-------------GQNYQQTMHATC 196


>gi|330814500|ref|YP_004362675.1| hypothetical protein bgla_4p0490 [Burkholderia gladioli BSR3]
 gi|327374492|gb|AEA65843.1| hypothetical protein bgla_4p0490 [Burkholderia gladioli BSR3]
          Length = 332

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 17/137 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y           ++ A  F TP  +  L   LL+    A  +        + +P
Sbjct: 114 DVLGETYM-----MMGIGNDRAGQFFTPYTISRLMAGLLIGDGSAAIERD--GFMRMQEP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV---PHGQELEPETHAVCVA---GMLIRRL-- 264
            CG GG +    + +   G +++            + +      + +     M++     
Sbjct: 167 ACGAGGMVIATADALLSVGQNYQQTLHATCIDIDARCVHMTYLQLSLMHIPAMIVHGNAL 226

Query: 265 --ESDPRRDLSKNIQQG 279
             E         +I  G
Sbjct: 227 TGEIWGIWYTPAHIIGG 243


>gi|260890843|ref|ZP_05902106.1| putative type II restriction enzyme, methylase [Leptotrichia
           hofstadii F0254]
 gi|260859396|gb|EEX73896.1| putative type II restriction enzyme, methylase [Leptotrichia
           hofstadii F0254]
          Length = 813

 Score = 51.1 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 117/421 (27%), Gaps = 92/421 (21%)

Query: 45  ECALEPT--RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
           +  LE     + V E+       + D E    + G+ F   S   +  L         + 
Sbjct: 88  DDVLESLFVDNEVFEEMKKISEYDFDSELNENILGHIF-EQSISDIEDLKKELNGEEFDK 146

Query: 103 YIASFSDN---------AKAIFEDFDFSSTIARLEKA---GLLYKICKNFSGIELHPDTV 150
                  +          K I E+    + +    K      L ++ +    IE      
Sbjct: 147 KKGKRKKDGIFYTPKYITKYIVEN-SIKNWLDDKRKELGEDKLPELTEKDFEIEYTRKKS 205

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             R     YE   +R  SE  +   +F T                             + 
Sbjct: 206 QKRT----YE---KRIYSENLKKHIEFWT-------------------KYREAVKNIKIV 239

Query: 211 DPTCGTGGFLTDAMNHVADCG------------------SHHKIPPILVPHGQELEPETH 252
           DP CG+G FL  A  ++ +                       K        G +L  E+ 
Sbjct: 240 DPACGSGAFLITAFEYLLNYNNYLNDKIFDLTGTKDLFSDTTKEILQNNIFGVDLNKESV 299

Query: 253 AVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKDL-----------------FTGKRFHY 294
            +    + ++  + +      + NI+ G++L  D+                 F    F  
Sbjct: 300 EITKLSLWLKTADKNKTLATLENNIKCGNSLIDDIEIAGELAFNWEKEFPQVFENGGFDV 359

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+    +   +         +   F            L+ + +   +       G
Sbjct: 360 VVGNPPYVSTKQIPVNDRNYYWDKYKEILFSEMD--------LYEIFIYKSINELLKNKG 411

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL--FFRTNIATYLWILSN 412
               +   S        +    +R++LLE   I  I+  P     F   N  T + IL+ 
Sbjct: 412 YLGFITRDSYF----TNTSFELLRKYLLEKTKIIEIIDFPYRFYPFKEVNTETAILILNK 467

Query: 413 R 413
           +
Sbjct: 468 K 468


>gi|163659873|ref|YP_001608496.1| helicase [Bartonella tribocorum CIP 105476]
 gi|161016942|emb|CAK00501.1| predicted helicase [Bartonella tribocorum CIP 105476]
          Length = 1597

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 21/230 (9%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            + S   + I  + D ++     ++    Y   +  +     P    + ++  +YE    
Sbjct: 756 NAISQAMEKILTELDKTNIEEESKELQEFYNSVRLRASGITSPLARQNLII-TLYESFFA 814

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223
           +   + ++      TP +V+      + D     F +S G    ++ DP  GTG F+T  
Sbjct: 815 KAFKKTTDRLGIVYTPVEVIDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 874

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LIRRLESDPRRDLSKNIQQGSTL 282
           +          +       H  E+    + +    +               K+I    T 
Sbjct: 875 LQSDLIKPEDMEYKFRHDIHANEIVLLAYYIAAINIEATYHSIMKGEYIPFKHIGLTDTF 934

Query: 283 SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                               +L           NPP+    + + D  + 
Sbjct: 935 RMLEEKNLLQKLFKENSEYLELQKNLNIEVIFGNPPYSVGQKNENDNAKN 984


>gi|172064554|ref|YP_001812204.1| hypothetical protein BamMC406_6530 [Burkholderia ambifaria MC40-6]
 gi|171998039|gb|ACB68955.1| conserved hypothetical protein [Burkholderia ambifaria MC40-6]
          Length = 345

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y  L        +  +  F TP  V  L   +L   D   + +  G +R + +P
Sbjct: 114 DVLGETYMML-----ELGNARSGQFFTPYHVSRLMA-MLTTGDGQPYIQQHGFLR-MREP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
            CG GG +      +A  G  H     +     +++P
Sbjct: 167 ACGAGGMVIATGESLAAAG--HNYQQTMHATCVDIDP 201


>gi|210610627|ref|ZP_03288527.1| hypothetical protein CLONEX_00717 [Clostridium nexile DSM 1787]
 gi|210152349|gb|EEA83355.1| hypothetical protein CLONEX_00717 [Clostridium nexile DSM 1787]
          Length = 2022

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 64/519 (12%), Positives = 145/519 (27%), Gaps = 79/519 (15%)

Query: 54   AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
             +            +  +  +       N  + +   LG  + +      I + S     
Sbjct: 933  EIITAVPQKRNQTEEDVAPQQKKSAEQQNNFQITDDALGVGSPKEKFRGNIEAIS----- 987

Query: 114  IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RRFGS 168
            + +  +  + +A  E+  +L +    + G+    D   +   S  Y+ L        +  
Sbjct: 988  LLKKLEAENRLATPEEQEILSRYVG-WGGLSAAFDDRKE-EWSREYQKLKSLLSEGEYRE 1045

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              S     F TP  V+     +L          S G    + +P+CG G F+      + 
Sbjct: 1046 ARSSTLNAFYTPPTVIKAMYQIL-----ENMGLSTG---NVLEPSCGVGNFMGLVPESMQ 1097

Query: 229  DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                       +  +G EL+P +  +               +   KN  +     +  + 
Sbjct: 1098 ----------NIQMYGVELDPISGKIA-------------GQLYQKNRIEVKGFERTEYP 1134

Query: 289  GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
               F   + N PFG     D+                         S++   +   K   
Sbjct: 1135 ESFFDCVIGNVPFGNYQVSDRKY--------------------DKYSLMIHDYFIVKSLD 1174

Query: 349  PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIAT 405
                GG  A++ SS  +          ++R    E   +   + LP + F     T++ +
Sbjct: 1175 LIRPGGVVAVITSSRTM-----DKESEKVRLQFAEKADLLGAIRLPENAFRKNAGTDVVS 1229

Query: 406  YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFS 465
             +           R +  L   + +      EG K      +    +L  + + E+ ++ 
Sbjct: 1230 DILFFQK------RDRAVLQKPSWVEVGETEEGYKINSYFVEHPEMVLGDF-AFESNQY- 1281

Query: 466  RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQ 525
              ++      + I +   L+      +  +   E D      +         +      +
Sbjct: 1282 GRMEVTVKPKKDISLETQLKEVIPFIQGQITVREFDELDLNETEDSILADPSVKNFSFAK 1341

Query: 526  IYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
            +    +     + +     A T +       +       
Sbjct: 1342 VGGQVYYRENSRMNRMDLPAVTTERVLGMIELRDITKKL 1380


>gi|254522810|ref|ZP_05134865.1| hypothetical protein SSKA14_1941 [Stenotrophomonas sp. SKA14]
 gi|219720401|gb|EED38926.1| hypothetical protein SSKA14_1941 [Stenotrophomonas sp. SKA14]
          Length = 1484

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 48/168 (28%), Gaps = 30/168 (17%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESPG------MIRTLYDPTCGTGGF 219
                +    + TP  +V       L+P  +     +PG      +   + DP CG+G F
Sbjct: 465 AGNARKLTGSYYTPDSLVQELIKSALEPVIEQRLAANPGNPTAALLAIRVIDPACGSGHF 524

Query: 220 LTDAMNHV--------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           L  A   +                     D     +       +G +  P    +    +
Sbjct: 525 LLAAARRLAEKLAQLRSLEGGQEGAIQPQDYRHALREVVTHCIYGVDRNPMAIELARMAL 584

Query: 260 LIRR-LESDPRRDLSKNIQQGSTL--SKDLFTGKRFHYCLSNPPFGKK 304
            +    E  P   L  ++Q G  L    DL   ++     +  P    
Sbjct: 585 WLEGYEEGRPLGFLDHHLQVGDALLGLTDLHVLEQGIAKDAFKPLSGD 632


>gi|166367862|ref|YP_001660135.1| DNA modification methyltransferase related protein [Microcystis
           aeruginosa NIES-843]
 gi|166090235|dbj|BAG04943.1| DNA modification methyltransferase related protein [Microcystis
           aeruginosa NIES-843]
          Length = 904

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 74/248 (29%), Gaps = 51/248 (20%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI------- 206
             NI+E       +E         T   D++ +    +    +   +++  +        
Sbjct: 298 FGNIFE---GTANAEERHTYGMHFTSEADIMKIVRPTISRYWEEKIEQAGTIGELNTLQL 354

Query: 207 ----RTLYDPTCGTGGFLTDAMNHVADCGS-----------------HHKIPPILVPHGQ 245
                 + DP CG+G FL  A   +                                +G 
Sbjct: 355 ELQQYKVLDPACGSGNFLYVAYQELKRIEQLLIEKIANRRRSSSDQLQISFVTPKQFYGM 414

Query: 246 ELEPETHAVCVAGMLI----------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           ++ P    +    ++I              S P   L  NI     L  D    ++    
Sbjct: 415 DINPFAVELARVTLMIARKVAIDRFNLTEASLPLDTLDSNIICADALFTDW---QKADAI 471

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPPF    +  +  +  ++ N    RF      + D S+ F  +         +  GR
Sbjct: 472 IGNPPF-LGGKHMRLNLSDDYVNKVFARFSE----VKD-SVDFCSYWFRLAHDQLDEKGR 525

Query: 356 AAIVLSSS 363
           A +V ++S
Sbjct: 526 AGLVGTNS 533


>gi|238918328|ref|YP_002931842.1| hypothetical protein NT01EI_0365 [Edwardsiella ictaluri 93-146]
 gi|238867896|gb|ACR67607.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 227

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 9/140 (6%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           + N++  L         +    F TP DV  +   L L    A+F E P +  TL++P C
Sbjct: 87  LGNVFMQL-----ELGDKYRGQFFTPWDVARMMAQLQLGDVKAMFDEKPFI--TLHEPAC 139

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G G  +    + +   G    +   +     +++P    +    + +  +  +     + 
Sbjct: 140 GAGCMVLAFADALNQAGYASHLYLWVSAT--DIDPLAAGMAYIQLSLCGVAGEVVIGNAL 197

Query: 275 NIQQGSTLSKDLFTGKRFHY 294
             ++   L         +  
Sbjct: 198 CDERRRVLLTPGHYLGSWSL 217


>gi|124267570|ref|YP_001021574.1| hypothetical protein Mpe_A2384 [Methylibium petroleiphilum PM1]
 gi|124260345|gb|ABM95339.1| hypothetical protein Mpe_A2384 [Methylibium petroleiphilum PM1]
          Length = 732

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 89/301 (29%), Gaps = 78/301 (25%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS---EVSEGAEDFMTPRD 182
           R+E  GLL++I  + + ++L P  +      +    ++R   +      +    F TP D
Sbjct: 142 RVEAEGLLHEIADHKALLDLLPYVLDPHGEGSRMSVMLRPETAPTRARKKADGVFYTPAD 201

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--IL 240
           V       ++               T++DP CG+G FL   +  +               
Sbjct: 202 VAGFMAERIVRSLIDDAVP-----LTVFDPACGSGVFLRAVLTELKRRHPGADAFDLACS 256

Query: 241 VPHGQELEPETHAVCVAGMLI----------RRLESDPRRDLSK-NIQQGSTLSKD---- 285
             +G +++P   AV  A +++          R +         + N+    TL  D    
Sbjct: 257 CLYGADIDP--WAVSAAALVVLVDSFESVEARGIAPVAAWHALRLNLVHMDTLRLDPGRA 314

Query: 286 -LFTG-----------------------------------------KRFHYCLSNPPF-G 302
                                                         +  H  + NPP+  
Sbjct: 315 VPHDDPERIARLACRAALKAGTLPEVEGEPPPSGPVGFQAVFPEIAEGAHVIIGNPPYAS 374

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
                D  ++ K  +      F       SD   LF+  +        +GG   A+VL  
Sbjct: 375 FGEAADFLSLSKRFET-----FQAAPKSTSDMYPLFVEQMTRLTAPDAHGG---AMVLPL 426

Query: 363 S 363
           S
Sbjct: 427 S 427


>gi|148241073|ref|YP_001220574.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
 gi|146411449|gb|ABQ39902.1| hypothetical protein BBta_p0264 [Bradyrhizobium sp. BTAi1]
          Length = 1748

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 71/273 (26%), Gaps = 60/273 (21%)

Query: 154 VMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            +    E  I    + S          TP  +V    +          +        + +
Sbjct: 193 EIGADLEDAIDDAGYASLARCTQYAHFTPEFIVRAIWS--------GLQRLGWRGGRVLE 244

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  GTG F       + +              G EL+P T  +                 
Sbjct: 245 PGIGTGLFPALMPEQLRE---------TSHVTGVELDPVTARIAR------------LLQ 283

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               I  G   ++       F   + NPPF  +  +   A                    
Sbjct: 284 PRARIVAGD-FARTELPA-TFDLTVGNPPFSDRTVRSDRAYRSMGLRLHDY--------- 332

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                 F+    + LE     G  AA V SS  +    A       R  + ++  + A +
Sbjct: 333 ------FIARAIDLLEP----GALAAFVTSSGTMDKADAS-----AREHIAKSADLIAAI 377

Query: 392 ALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
            LP   F     T++   +     RK  +  G 
Sbjct: 378 RLPEGSFRASAGTDVVVDILFFRKRKVGDAEGD 410


>gi|38234327|ref|NP_940094.1| putative DNA methyltransferase [Corynebacterium diphtheriae NCTC
           13129]
 gi|38200590|emb|CAE50286.1| Putative DNA methyltransferase [Corynebacterium diphtheriae]
          Length = 926

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 93/318 (29%), Gaps = 64/318 (20%)

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF-----DF 120
             D   F K A Y + +        +   +    L + + S         ++F       
Sbjct: 214 AEDAGLFEKDAFYRYLDGLRADQVRVALRDLFEVLNTPVDSRDPYLSEQLKNFPYVNGGL 273

Query: 121 SSTIARLEK-AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
            + + ++      +  +  +    + +   +   +   ++E  +     E         T
Sbjct: 274 FAKVEQIPNFTDEILDLLVHEVSEKTNWAEISPTIFGGVFESTL---NPETRARGGMHYT 330

Query: 180 PRDVVHLATALLLDP----DDALFKESPGMIR-----------------TLYDPTCGTGG 218
             + +H     L       +      + G+                     +DP CG+G 
Sbjct: 331 SPENIHKVIDPLFLDSLKAELDSILNASGITANKRKKQLEAFHTKISELKFFDPACGSGN 390

Query: 219 FLTDAMNHVADCGSHHKIPPI-----------------LVPHGQELEPETHAVCVAGMLI 261
           FLT+   H+    +                           +G E+     +V    + I
Sbjct: 391 FLTETYIHLRKIENKILSELAGDQTQLGFSNVTLKVSLDQFYGIEINDFAVSVASTALWI 450

Query: 262 RRLESDPRRDL-------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPPF-GKK 304
            +L+++   +              + +I  G+ L  D       ++ +Y + NPPF G  
Sbjct: 451 AQLQANIEAESIVTANIESLPLRDAAHIHLGNALRTDWASVLAPEQCNYIIGNPPFLGYS 510

Query: 305 WEKDKDAVEKEHKNGELG 322
              D    +++   G+ G
Sbjct: 511 RLDDAQKEDRKAIFGKNG 528


>gi|257893675|ref|ZP_05673328.1| type I restriction-modification system methylation subunit
           [Enterococcus faecium 1,231,408]
 gi|257830054|gb|EEV56661.1| type I restriction-modification system methylation subunit
           [Enterococcus faecium 1,231,408]
          Length = 115

 Score = 50.7 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 9/92 (9%), Positives = 20/92 (21%), Gaps = 16/92 (17%)

Query: 26  FKHTDFGKVILPFTLLRRLECALEPT----RSAVREKY-----------LAFGGSNIDLE 70
              +++   +L     + L   L            E+Y                     +
Sbjct: 1   MDASEYKNYLLGLIFYKYLSDRLLEQVVLLADESLEEYDTVSKQTMLYRELLSDEESKED 60

Query: 71  SFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLE 101
               +     Y  S  Y  + L     +   +
Sbjct: 61  LIATIVDILGYAISPEYLFNVLADQAKQATFQ 92


>gi|157372289|ref|YP_001480278.1| hypothetical protein Spro_4055 [Serratia proteamaculans 568]
 gi|157324053|gb|ABV43150.1| conserved hypothetical protein [Serratia proteamaculans 568]
          Length = 188

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 51/183 (27%), Gaps = 28/183 (15%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E    L  +      + +  +      +   +  L         +    F TP  V  + 
Sbjct: 25  EDVERLAHLLTL---VRIALNAQACDFLGMTFMQL-----ELGDKHRGQFFTPWSVASMM 76

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L         +  P    T+ +P CG GG +  A   V      ++    +     ++
Sbjct: 77  AKLQFTGLKQQLQTQP--FVTISEPGCGAGGMMIAAA--VEMQTLGYEPSQHMWVSCVDI 132

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK--------DLFTGKRFHYCLSNP 299
           +    ++    +    +  +        I  G+ L+          +   +++   +   
Sbjct: 133 DVVAVSMAYIQLSSLGIPGE--------IVLGNVLANERRLVMYTPMHWLEKWPLRIQQY 184

Query: 300 PFG 302
             G
Sbjct: 185 HSG 187


>gi|258513312|ref|YP_003189567.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256635215|dbj|BAI01188.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01]
 gi|256638270|dbj|BAI04236.1| DNA methylase [Acetobacter pasteurianus IFO 3283-03]
 gi|256641324|dbj|BAI07283.1| DNA methylase [Acetobacter pasteurianus IFO 3283-07]
 gi|256644379|dbj|BAI10331.1| DNA methylase [Acetobacter pasteurianus IFO 3283-22]
 gi|256647434|dbj|BAI13379.1| DNA methylase [Acetobacter pasteurianus IFO 3283-26]
 gi|256650487|dbj|BAI16425.1| DNA methylase [Acetobacter pasteurianus IFO 3283-32]
 gi|256653478|dbj|BAI19409.1| DNA methylase [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656531|dbj|BAI22455.1| DNA methylase [Acetobacter pasteurianus IFO 3283-12]
          Length = 902

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 58/202 (28%), Gaps = 44/202 (21%)

Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGM---------- 205
           +I+  +I+    E   GA     T    +      L         E  G           
Sbjct: 281 DIFGSMIQAVADEGERGALGMHYTSVPNIRKVLNPLFLDGLREELEKAGQNTQKLHALKE 340

Query: 206 ---IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------VPHGQELEPE 250
                 ++DP CG+G FL  A   + D  S       +              +G E+   
Sbjct: 341 RLSGIRVFDPACGSGNFLVIAYKDMRDIQSEIDDRLKIERAERKSVIPLANFYGIEIRDF 400

Query: 251 THAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF---TGKRFH- 293
              +    +LI   +SD      K             +I  G+ L +D F     ++   
Sbjct: 401 AVEIARLSLLIAEFQSDEIHIDQKQARLNVLPLKDTGHIICGNALERDWFDVCAPQKSSE 460

Query: 294 -YCLSNPPFGKKWEKDKDAVEK 314
            Y   NPP+     +  +    
Sbjct: 461 IYICGNPPYKGSQWQSAEQKAD 482


>gi|300772424|ref|ZP_07082294.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760727|gb|EFK57553.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1810

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 81/301 (26%), Gaps = 61/301 (20%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  I                  ++     L++    +  +               F TP
Sbjct: 49  VLNPIANEIDINHWRKTEHDLFPITLELHKLLKEKSEDDKQYRRYVDSMKSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V+   +  L + D  + K          +P+ G G F+                   +
Sbjct: 109 PQVIDAISETLRESDVNIQK--------FLEPSAGIGSFIQSFSE---------NQQTKV 151

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             + ++             L+   +         NI+              +    SN P
Sbjct: 152 TAYEKD-------------LLTG-KILKHLYPESNIRVSGYEEIPEKEQNSYDVVASNIP 197

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG     D      +             P     +     +   K       GG    + 
Sbjct: 198 FGDTSVFDLTFSRSKD------------PAKIQAARSIHNYFFLKGNDMLREGGLQVFIT 245

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417
           S   L +         IRR L++++ + ++V LP +LF     T + + L IL     ++
Sbjct: 246 SQGILNSPNNEP----IRRALMKSNHLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKQ 301

Query: 418 R 418
            
Sbjct: 302 P 302


>gi|227537745|ref|ZP_03967794.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242359|gb|EEI92374.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1810

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 81/301 (26%), Gaps = 61/301 (20%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  I                  ++     L++    +  +               F TP
Sbjct: 49  VLNPIANEIDINHWRKTEHDLFPITLELHKLLKEKSEDDKQYRRYVDSMKSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             V+   +  L + D  + K          +P+ G G F+                   +
Sbjct: 109 PQVIDAISETLRESDVNIQK--------FLEPSAGIGSFIQSFSE---------NQQTKV 151

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             + ++             L+   +         NI+              +    SN P
Sbjct: 152 TAYEKD-------------LLTG-KILKHLYPESNIRVSGFEEIPEKEQNSYDVVASNIP 197

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           FG     D      +             P     +     +   K       GG    + 
Sbjct: 198 FGDTSVFDLTFSRSKD------------PAKIQAARSIHNYFFLKGNDMLREGGLQVFIT 245

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEE 417
           S   L +         IRR L++++ + ++V LP +LF     T + + L IL     ++
Sbjct: 246 SQGILNSPNNEP----IRRALMKSNHLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAKQ 301

Query: 418 R 418
            
Sbjct: 302 P 302


>gi|24213603|ref|NP_711084.1| methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45658571|ref|YP_002657.1| site-specific modification DNA-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|24194397|gb|AAN48102.1| methylase [Leptospira interrogans serovar Lai str. 56601]
 gi|45601815|gb|AAS71294.1| site-specific modification DNA-methyltransferase [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 543

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 92/252 (36%), Gaps = 31/252 (12%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           ++    F TP  V H     +L         S G+ R + DP  G G F    +N + D 
Sbjct: 9   NKFLGQFFTPERVAHFLVDWVLG--AERITSSEGLKR-ILDPAIGNGVFFESVLNRLPDL 65

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +           G +L+ E  +   A +  R  +S       ++              +
Sbjct: 66  NAEW--------VGFDLDIECLSSSRAVLENRISDSSILSFYDRDFLL-------QEENQ 110

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   L NPP+    + +     KE      G+    LP  ++  + FL+   N + +  
Sbjct: 111 KFDVILCNPPYR---KINDKNYSKELIQQFEGKSDRKLPGTANLYVFFLLKCLNLIHV-- 165

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIATYLW 408
             GGRAA ++      +G     +S     L E+ L+ ++        LF     ++ + 
Sbjct: 166 --GGRAAFLVPQDFFNSGYGVFIKSV----LQESGLLHSLFLFSPQDILFDEAITSSCIL 219

Query: 409 ILSNRKTEERRG 420
           +  N + E++ G
Sbjct: 220 LFENSEREKKSG 231


>gi|225075297|ref|ZP_03718496.1| hypothetical protein NEIFLAOT_00300 [Neisseria flavescens
           NRL30031/H210]
 gi|224953472|gb|EEG34681.1| hypothetical protein NEIFLAOT_00300 [Neisseria flavescens
           NRL30031/H210]
          Length = 960

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 84/346 (24%), Gaps = 83/346 (23%)

Query: 24  GDFKHTDFGKVILPFTLLRRLEC--ALEPTR--SAVREKYLAFGGSNIDLESFVKVAGYS 79
           G ++  +    I     L   +     +         E           L    +     
Sbjct: 183 GIYEEHELRLFITRLLFLFFADDSAVFQRNYLFQDFLESCKEADTLGDKLNQLFE----- 237

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK- 138
           F NT         + + +     Y+       K     FDF++   R         +   
Sbjct: 238 FLNTP--DQKRSKTQSEKFKGFEYVNG--GLFKERLRTFDFTAKQHR--------ALIDC 285

Query: 139 -NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-- 195
            NF    + P+     +   +++ ++    ++    A    T    +      L   +  
Sbjct: 286 GNFDWRNISPE-----IFGTLFQSVMD---AQERREAGAHYTEAANIDKVINGLFLENLR 337

Query: 196 -----DALFKESPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--- 237
                    K                    DP CG G FL  A + +             
Sbjct: 338 AEFEAVKALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALK 397

Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------- 270
                          +   HG E++     +    M ++  + + R              
Sbjct: 398 DKAGGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTL 457

Query: 271 --DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + +  I   ++L       +   Y   NPPF     + K+    
Sbjct: 458 PLEDAAEIIHANSLRTPW---QAADYIFGNPPFIGSTYQTKEQKND 500


>gi|329849646|ref|ZP_08264492.1| endonuclease and methylase LlaGI [Asticcacaulis biprosthecum C19]
 gi|328841557|gb|EGF91127.1| endonuclease and methylase LlaGI [Asticcacaulis biprosthecum C19]
          Length = 1015

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 84/317 (26%), Gaps = 45/317 (14%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIRTLYDPTCGT 216
           +YE+  + +  + ++      TP ++V                K        + DP  GT
Sbjct: 286 VYENFYKVYNPKAADRLGVVYTPNEIVRFMIEGTDWLTKKHFDKHLIDRDVQILDPATGT 345

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G F+ + + H                H  E+    + V    +         +     ++
Sbjct: 346 GTFICELIEHFRGQPEKLAHKYKEELHANEVAILPYYVANLNIEATYAAISGQFSEFPSL 405

Query: 277 QQGSTLSK------------DLFTG--------------KRFHYCLSNPPFGKKWEKDKD 310
               TL              DLF                +     + NPP+    + + D
Sbjct: 406 CFVDTLDNVAGLGIYSGFQHDLFGAIADENVARIKRQNQRSISVIIGNPPYNANQQNEND 465

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL----ELPPNGGGRAAIVLSSSPLF 366
             +         R      + S      L  +  +         N  G   ++ + S + 
Sbjct: 466 NNKNRTYARIDERIKETYIRQSTAQKTKLYDMYARFFRWASDRLNRDGVLCMITNRSFID 525

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT----------NIATYLWILSNRKTE 416
           +          R+ + E      +V L  D+               I T + I    K  
Sbjct: 526 SRTFDG----FRKVVAEEFNEIYVVDLGGDVRANPKLSGTKHNVFGIQTGVAISFFVKRH 581

Query: 417 ERRGKVQLINATDLWTS 433
           +++G          + +
Sbjct: 582 KQKGYKIFYARRPEFDT 598


>gi|296450810|ref|ZP_06892561.1| N-6 DNA methylase superfamily protein [Clostridium difficile NAP08]
 gi|296260371|gb|EFH07215.1| N-6 DNA methylase superfamily protein [Clostridium difficile NAP08]
          Length = 2006

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 91/323 (28%), Gaps = 70/323 (21%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH- 161
              F  N  AI   +  +  +  A  E+  +L        G    PD   +   S   E+ 
Sbjct: 961  EKFRANVMAIRVLKKCESENRYASPEEQEILSNYV----GWGGLPDAFDESKASWSEEYQ 1016

Query: 162  ----LIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
                L+ +  + +          T   ++     L         +        + +P+ G
Sbjct: 1017 ELKDLLTKEEYAAARESTLNAHYTQPVIIESMYQL--------LQNLGFEKGNILEPSMG 1068

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
             G F     + +               +G EL+  +  +                +    
Sbjct: 1069 VGNFFGMLPDKLQQ----------SRLYGVELDSISGRIAKL----------LYPNADIQ 1108

Query: 276  IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            I+      K  +    F   + N PFG     D+   +      +               
Sbjct: 1109 IKG---FEKTDYPNDFFDVAIGNVPFGSYKVNDRQYDKYHFMVHDY-------------- 1151

Query: 336  MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
              FL    ++L      GG AA++ +   +          E+R++L E   +   + LP 
Sbjct: 1152 --FLAKTIDQLRP----GGVAALITTKGTM-----DKASPEVRKYLAERAELLGAIRLPN 1200

Query: 396  DLF-FRTNIATYLWILSNRKTEE 417
            + F           IL  +K E 
Sbjct: 1201 NAFKANAGTEVSADILFFQKRES 1223


>gi|315222591|ref|ZP_07864480.1| type I restriction modification DNA specificity domain protein
           [Streptococcus anginosus F0211]
 gi|315188277|gb|EFU22003.1| type I restriction modification DNA specificity domain protein
           [Streptococcus anginosus F0211]
          Length = 537

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 29/201 (14%)

Query: 249 PETHAVCVAG-MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
                +        + L      +   +I+Q + + +  FT ++F   LS P FG + + 
Sbjct: 146 DSHFTLTTMDAFYYKVLNEMFDDNDMVDIKQIN-IYQYEFTSEKFDLILSVPVFGVRDKA 204

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D+ +     +                  M+   +LA  L+      G  +IVL +   F 
Sbjct: 205 DESSEFICRE----------------YDMIAAENLALHLKSE----GILSIVLPAKITFA 244

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427
           G       E+R +L     ++ I  LP+ +F  T + T+L I++  +      +V +   
Sbjct: 245 GGTV---KELREFLQSMYCLKEISDLPSGIFDNTGVKTFLLIITTGR----TDEVTIKRF 297

Query: 428 TDLWTSIRNEGKKRRIINDDQ 448
                + R  G K+ ++ DD 
Sbjct: 298 VFEDENARKTGNKKLVVQDDT 318


>gi|294783280|ref|ZP_06748604.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480158|gb|EFG27935.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 246

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 29/205 (14%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E +   + +K  +        E F       FY  S  + + +G+ +     ++ +  + 
Sbjct: 20  EASVDNIVKKIQSLVHKQNYDEIFFDWVRCMFYTYSN-TCNKIGAEDREEKYKNIVKKYG 78

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
                IF D +                + + F                + Y   I     
Sbjct: 79  KGIIDIFIDCNVD--------------LIQLFEKNI------------DDYLGKIHHKLE 112

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
             ++    F TP  +  L      +          G    + D  CG+G  +   +  + 
Sbjct: 113 VHNKMKGQFFTPFHLSKLLAYTRFEELKKELDS--GKSIKITDSACGSGCLILGMLAVLK 170

Query: 229 DCGSHHKIPPILVPHGQELEPETHA 253
           + G +++    +     +      A
Sbjct: 171 EKGVNYQNKIFISCSDLDENAIQMA 195


>gi|38261096|ref|NP_940747.1| GcrY [Arcanobacterium pyogenes]
 gi|37993851|gb|AAR07009.1| GcrY [Arcanobacterium pyogenes]
          Length = 910

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 74/282 (26%), Gaps = 71/282 (25%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--- 195
             +  +     +   V  ++++ +  +   E   G  +  T +  +      L   +   
Sbjct: 314 LLNACDFDWSKIDVSVFGSLFQLVKSK---EARRGDGEHYTSKTNILKTIGPLFLDELRA 370

Query: 196 -DALFKESPG-------------MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
                  +P                    DP CG G FL  A   +    +         
Sbjct: 371 QADKLVSNPATPVRKLEEFRDSLAAHIFCDPACGAGNFLLTAYKELRRIETDLIVAIRQR 430

Query: 234 ------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------- 273
                        +   I   +G EL      +    M +   +++     +        
Sbjct: 431 RGETGMSLNIEWEQKLSIGQFYGFELNWWPAKIAETAMFLVDHQANKELANAVGRPPQRL 490

Query: 274 -----KNIQQGSTLSKDLFTGKRF----HYCLSNPPFG---KKWEKDKDAVEKEHKNGEL 321
                 +I  G+ L+ D            +   NPPF     + ++  + ++   +   +
Sbjct: 491 PITITAHIVHGNALALDWTEALPKAVGETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKNI 550

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            R                      L+L     GR A V ++S
Sbjct: 551 SRLDYVT-----------CWHIKSLDLFSTRNGRFAFVTTNS 581


>gi|225032082|gb|ACN79574.1| NmeAIII [synthetic construct]
          Length = 937

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 85/346 (24%), Gaps = 83/346 (23%)

Query: 24  GDFKHTDFGKVILPFTLLRRLECALEPTR----SAVREKYLAFGGSNIDLESFVKVAGYS 79
           G ++  +    I     L   + +    R        E           L    +     
Sbjct: 183 GIYEEHELRLFITRLLFLFFADDSAVFRRNYLFQDFLENCKEADTLGDKLNQLFE----- 237

Query: 80  FYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK- 138
           F NT         + + +     Y+       K     FDF++   R         +   
Sbjct: 238 FLNTP--DQKRSKTQSEKFKGFEYVNG--GLFKERLRTFDFTAKQHR--------ALIDC 285

Query: 139 -NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-- 195
            NF    + P+     +   +++ ++    ++    A    T    +      L   +  
Sbjct: 286 GNFDWRNISPE-----IFGTLFQSVMD---AQERREAGAHYTEAANIDKVINGLFLENLR 337

Query: 196 -----DALFKESPGM----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP--- 237
                    K                    DP CG G FL  A + +             
Sbjct: 338 AEFEAVKALKRDKAKKLAAFYQKIQNLQFLDPACGCGNFLIVAYDRIRALEDDIIAEALK 397

Query: 238 --------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRR------------- 270
                          +   HG E++     +    M ++  + + R              
Sbjct: 398 DKADGLFDSPSVQCRLKQFHGIEIDEFAVLIARTAMWLKNHQCNIRTQIRFDGEVACHTL 457

Query: 271 --DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + +  I   ++L       +   Y   NPPF     + K+    
Sbjct: 458 PLEDAAEIIHANSLRTPW---QAADYIFGNPPFIGSTYQTKEQKND 500


>gi|327403687|ref|YP_004344525.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
 gi|327319195|gb|AEA43687.1| N-6 DNA methylase [Fluviicola taffensis DSM 16823]
          Length = 866

 Score = 50.7 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 105/354 (29%), Gaps = 58/354 (16%)

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE---THAVCVAGMLIRRLESDPR 269
               GG    +   +     +      L      L      + A+  A   I +  +   
Sbjct: 192 CSIIGGLDIYSEKLILRTNQNMLNNYKLNIFENNLNAAYLHSFAMQWANDDIVKQNNLLL 251

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              + + +   +   D    +        PP+G   +  + +                  
Sbjct: 252 EAATGSFE---SFKDDNQPTRAVGIFT--PPWGVFNKDSEWSS----------------- 289

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                + +F+M+     E       +A +++     ++G         R++L E + I++
Sbjct: 290 -----NFVFIMNELEGREKILLN--KAVLIVPEGANYSGGKD---LNARKYLTERNYIDS 339

Query: 390 IVALPTDLFFRTNIA---TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +V LP   F    IA     + +    K  E   +V   +    +  + N   ++     
Sbjct: 340 VVTLP---FSSPGIAIKSISIIVFDFNKKSE---EVLFAD----FNQMENFDIEQNW--- 386

Query: 447 DQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
               QI+ +   ++N  + S+ ++Y+   Y       P R  F      L      +   
Sbjct: 387 ---NQIVTVINDKQNLHQVSKKVNYQELQYSEYSWA-PTRYIFDAQSLPLKENHEAVLLD 442

Query: 506 KLSPLHQSFWLDILKPMMQ--QIYPYGWAESFVKESIKSNEAKTLKVKASKSFI 557
            L    +  +    K + +  +I     ++    +         L + A +   
Sbjct: 443 SLLLQIKKGFNIDRKKLYEGGEIKYLKTSDLSQNDIYLQLNENILGIDADEFEK 496


>gi|331089477|ref|ZP_08338376.1| hypothetical protein HMPREF1025_01959 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404845|gb|EGG84383.1| hypothetical protein HMPREF1025_01959 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 286

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 21/170 (12%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +      + +I+  L     +   +    F TP  V  L   +    +D          
Sbjct: 131 EENPEQDFLGSIFMEL-----NLGDKSNSQFFTPYHVCELMAKV--TEEDVAAVVKEKGY 183

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRL 264
            T+ D  CG G  L  A+N          +          Q+++     +C   + +  +
Sbjct: 184 ITINDSCCGAGATLIAAINEARKQLEKVNLNFQNHVLVVAQDIDEIVALMCYIQLSLLGV 243

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                   +  I+ G   ++ + T         N  F   +  D   + +
Sbjct: 244 --------AAYIKVGDVFTQPMSTDDNGE----NYWFTMMYFSDVWTMRR 281


>gi|188527483|ref|YP_001910170.1| hypothetical protein HPSH_03515 [Helicobacter pylori Shi470]
 gi|188143723|gb|ACD48140.1| hypothetical protein HPSH_03515 [Helicobacter pylori Shi470]
          Length = 1409

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 88/307 (28%), Gaps = 35/307 (11%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +N+++ I+   D                 L+    LY+  K    +          ++ 
Sbjct: 604 GDNIKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMRAKSQKSQQELIK 659

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
           N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 660 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRAADGILKKHFNTDFNDKNITIFDPFTG 719

Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TG F+   ++   +  S    K   +      ++    + + +  +       D      
Sbjct: 720 TGSFIARLLSKENELISDEALKEKFLNHLFAFDIVLLAYYIALINITQAAQSRDSSLKNF 779

Query: 274 KNIQQGSTL-----SKDL-----FTGKR-------------FHYCLSNPPF--GKKWEKD 308
           KNI    +L       D      F   +                 + NPP+  G K + D
Sbjct: 780 KNIALTDSLDIYEEKNDKGVLPIFEDLKENKEIKSTIEKQNIRVIIGNPPYSAGTKSQND 839

Query: 309 KDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
            +      K  +      G     ++ + +   L+             G    V++ S +
Sbjct: 840 NNQNLSHPKLEKRVYEKYGKNSTAQVGNTTRDTLIQSIYMASELLKDRGVLGFVVNGSFI 899

Query: 366 FNGRAGS 372
            +  A  
Sbjct: 900 DSKSADG 906


>gi|41584550|gb|AAS09913.1| BsmBI M1-M2 methyltransferase fusion protein [Geobacillus
           stearothermophilus]
          Length = 1068

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 87/271 (32%), Gaps = 62/271 (22%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            S+    F TP  +      L         K+ P  ++++ DP CG G  L  A+ +   
Sbjct: 119 ASKAYGYFFTPISLGTRMVKL-------ALKDKPKNLKSIVDPACGIGSLLALALIY--- 168

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----TLSKD 285
                +        G EL+  T  +     L+ R+  D        I   +     L+ +
Sbjct: 169 -NPEIEN-----VVGIELDSFTANISHK--LLVRISKDLGITPKIKIINQNFLDYVLNYE 220

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE--------------------LGR-- 323
               ++F   + NPP+G+          KE K+G                       R  
Sbjct: 221 EEHKEKFDLLIMNPPYGRVRFLKNSLTNKETKSGLTEGISELEKKLREETILNAADLRKK 280

Query: 324 -----FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
                 G G P+ S    +FL       ++    G   AI       + G     E  +R
Sbjct: 281 FASVGLGKGTPEYSK---VFLAI---STKIVKQNGYVIAITP---SSWLGDESGRE--LR 329

Query: 379 RWLLENDLIEAI--VALPTDLFFRTNIATYL 407
           ++L+EN  I  I        LF   N  T +
Sbjct: 330 KYLVENHGISCIWNFKESAKLFSGVNQPTTV 360


>gi|308063540|gb|ADO05427.1| hypothetical protein HPSAT_03445 [Helicobacter pylori Sat464]
          Length = 1604

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 84/307 (27%), Gaps = 35/307 (11%)

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             +N+++ I+   D                 L+    LY+  K    +          ++ 
Sbjct: 803  GDNIKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMRAKSQKSQQELIK 858

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
            N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 859  NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTG 918

Query: 216  TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            TG F+   ++   +  S    K   +   +  ++    + + +  +       D      
Sbjct: 919  TGSFIARLLSKENELISDEALKEKFLNHLYAFDIVLLAYYIALINITQAAQSRDGSLKNF 978

Query: 274  KNIQQGSTL-----SKDL-----FTGKR-------------FHYCLSNPPFGKKWEKDKD 310
            KNI    +L       D      F   +                 + NPP+    +   D
Sbjct: 979  KNIVLTDSLDIYEEKNDKGVLPIFEDLKENKEIKSTIEKQNIRVIIGNPPYSAGAKSQND 1038

Query: 311  AVEKEHKNGELGRFGPGLPKISDGSM-----LFLMHLANKLELPPNGGGRAAIVLSSSPL 365
              +         R      K S   +       L+             G    V++ S +
Sbjct: 1039 NNQNLSHPKLEKRVTEKYGKNSTAQVENTTRDTLIQSIYMASELLKDRGVLGFVVNGSFI 1098

Query: 366  FNGRAGS 372
             +  A  
Sbjct: 1099 DSKSADG 1105


>gi|262195378|ref|YP_003266587.1| restriction endonuclease [Haliangium ochraceum DSM 14365]
 gi|262078725|gb|ACY14694.1| restriction endonuclease [Haliangium ochraceum DSM 14365]
          Length = 629

 Score = 50.7 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 74/255 (29%), Gaps = 44/255 (17%)

Query: 175 EDFMTPRDVVHLATALLL---DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             F TP  +V    A  L        L          + DP  G G FL  A   +    
Sbjct: 76  GAFFTPLPLVDFVVAQTLGARLARGELRWRGDIPALRVLDPCAGDGRFLRRAHAALLAWT 135

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN------IQQGSTL--S 283
                        Q   P+  A+  A +L   +E DP             I     L  S
Sbjct: 136 RR-----------QGRAPDPDALARACLL--GVERDPGFAALARRLSGAEIHCWEALGES 182

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM----LFL 339
            D F G  F   + NPP+ +         +        GR+       S G       FL
Sbjct: 183 PDSFAG-SFDLVVGNPPYMRSI--HLADSDPALWQALAGRYAA----TSHGEWDLYAAFL 235

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLF 398
            H    L      GG+  +V+ S  L    A      +R  L E   + AIV      +F
Sbjct: 236 EHSLRWLAP----GGQVGLVVPSRWLTAAFARP----LRALLGEGRAVRAIVDFGAQQIF 287

Query: 399 FRTNIATYLWILSNR 413
                   +  LS  
Sbjct: 288 RGATTYASVAFLSRE 302


>gi|295100255|emb|CBK97800.1| Type I restriction-modification system methyltransferase subunit
           [Faecalibacterium prausnitzii L2-6]
          Length = 297

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           I           + ++Y           ++ A  F TP DV      +  DP        
Sbjct: 85  IMGMEQNPDQDFLGSLYM-----MCELGNDHAGQFFTPYDVCRCMAEITFDPK---LHPD 136

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                ++ DP CG G  L   +N      
Sbjct: 137 MEGFISVSDPACGAGATLLAFLNVCKRRN 165


>gi|257880287|ref|ZP_05659940.1| adenine-specific methyltransferase [Enterococcus faecium 1,230,933]
 gi|257882141|ref|ZP_05661794.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,502]
 gi|257885332|ref|ZP_05664985.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,501]
 gi|257890944|ref|ZP_05670597.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,410]
 gi|257894200|ref|ZP_05673853.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,408]
 gi|257814515|gb|EEV43273.1| adenine-specific methyltransferase [Enterococcus faecium 1,230,933]
 gi|257817799|gb|EEV45127.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,502]
 gi|257821188|gb|EEV48318.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,501]
 gi|257827304|gb|EEV53930.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,410]
 gi|257830579|gb|EEV57186.1| adenine-specific methyltransferase [Enterococcus faecium 1,231,408]
          Length = 339

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E    +  + +    +   P+         + 
Sbjct: 31  SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 85

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 86  QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 140

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 141 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 183

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 184 --FHQDGLQELLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 230

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 231 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 282

Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435
           +LF        + IL  +  + ++  +V L+    L    +
Sbjct: 283 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 323


>gi|256760965|ref|ZP_05501545.1| endonuclease and methylase LlaGI [Enterococcus faecalis T3]
 gi|256682216|gb|EEU21911.1| endonuclease and methylase LlaGI [Enterococcus faecalis T3]
          Length = 1576

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/311 (15%), Positives = 93/311 (29%), Gaps = 43/311 (13%)

Query: 109  DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +N     E+  F+     LE    LY+  K  +      +     ++  +Y+        
Sbjct: 798  ENIVKELENAGFAKEQENLEP---LYESVKMRAEGIERAEDKQKIII-TLYDKFFSTAFK 853

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              +E      TP +VV      + D  +A   K        + DP  GTG F+   ++++
Sbjct: 854  STTERLGIVFTPIEVVDFIVKSVDDVLNAHLGKTLSSENVHIMDPFTGTGTFIVRTLSYL 913

Query: 228  ADC--GSHHKIPPILVPHGQELEPE-----THAVCVAGM---LIRRLESDPRRDLSKNIQ 277
             +       K   ++  + QEL        ++ +    +          D      + I 
Sbjct: 914  KEQLISGKIKKEDVIRKYSQELHANEIVLLSYYIAAINIESTFDEITGKDLGYTPFEGIV 973

Query: 278  QGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEH-- 316
               T       D    + F                  + NPP+  + E + D  +     
Sbjct: 974  LTDTFESTEVPDTLDDEYFGSNDERLKRQQEVPITAIIGNPPYSARQESENDDNKNISYT 1033

Query: 317  KNGELGRFGPG-LPKISDGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
               E  R        + + + L+  L              G  A + +SS + +      
Sbjct: 1034 NLDEQIREDYAQYTNVRNKNTLYDSLFRAFKWSTNRLKDKGVIAYITNSSFIDSQTTSG- 1092

Query: 374  ESEIRRWLLEN 384
               IR+ L E 
Sbjct: 1093 ---IRKDLFEQ 1100


>gi|218263970|ref|ZP_03477901.1| hypothetical protein PRABACTJOHN_03591 [Parabacteroides johnsonii DSM
            18315]
 gi|218222381|gb|EEC95031.1| hypothetical protein PRABACTJOHN_03591 [Parabacteroides johnsonii DSM
            18315]
          Length = 1661

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/450 (14%), Positives = 129/450 (28%), Gaps = 62/450 (13%)

Query: 40   LLRRLECALEP--TRSAVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNT 96
             + R+   ++    + A  E            +++   +   + +  +      L +   
Sbjct: 757  FIERISKLIQSGVHKKAFNEYLKGLQRDLNPSVDAAQAIEMLAQHIITRPVFDALFADYQ 816

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC-KNFSGIELHPDTVPDRVM 155
              N  + ++        + ++  F      LEK    Y+    N  GI+         ++
Sbjct: 817  FVN-NNAVSRSMQRMIDLLQEQAFEKDTEVLEK---FYQSVRTNVGGIDNLEGKQT--II 870

Query: 156  SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTC 214
             N+YE   +       E      TP + V      + D   A F  S       + DP  
Sbjct: 871  KNLYEKFFKGAFPLTVEKLGIVYTPVECVDFIIRSVDDILKAEFNTSLTEQNVHILDPFV 930

Query: 215  GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDL 272
            GTG F+T  +          +   +   H  E+    + +    +  +   +        
Sbjct: 931  GTGTFITRLLQSGLIRPEDMERKYLNEIHCNEIVLLAYYIADVNIESVFHDITRRKTYLP 990

Query: 273  SKNIQQGST--LSKDLFTG------------------KRFHYCLSNPPFGKKWEKDKDAV 312
               I    T  L++                             + NPP+    +   D  
Sbjct: 991  YSGICLTDTFQLAEKKHNELFTEFFQDNSKRVKKQMATHVRVIVGNPPYSIGQKSANDNA 1050

Query: 313  EKEHKNGELGRFGPGLPKISDGSML------FLMHL-ANKLELPPNGGGRAAIVLSSS-- 363
            +         R      K S  ++L      ++         L PN GG  A + +S   
Sbjct: 1051 QNLSYPALERRIEDTYVKKSSAALLKGVYDSYIKAFRWASDRLNPNEGGIIAFITNSGWL 1110

Query: 364  --PLFNGRAGSGESEI------------RRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              P+  G   + E E             R    EN   E       ++F   T +A  + 
Sbjct: 1111 DKPMGEGFRRTIEQEFSKIYVFDLRGAVRAKTKENARKEG-----ENVFNIMTGVAITIL 1165

Query: 409  ILSNRKTEERRGKVQLINATDLWTSIRNEG 438
            + +    +E + ++   N  D  T  +   
Sbjct: 1166 VKNPAHQKEDKCEILYRNIGDYLTREQKLK 1195


>gi|327184437|gb|AEA32882.1| putative type II restriction endonuclease [Lactobacillus amylovorus
           GRL 1118]
          Length = 948

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 86/317 (27%), Gaps = 65/317 (20%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L  I  N +        +   +   ++E  +     +         T  + +H     
Sbjct: 303 EKLKDIILNKASRGFDWSDISPTIFGAVFESTL---NPDTRREGGMHYTSIENIHKVIDP 359

Query: 191 LL-------------------DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC- 230
           L                      D A+  +      T +DP CG+G FLT+    +    
Sbjct: 360 LFLDDLKAKLEKIKQYKNQKTIHDKAVAFQEELANLTFFDPACGSGNFLTETFLSLRRLE 419

Query: 231 ------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
                                     I    G E+     +V    + I   +       
Sbjct: 420 NEAIRLELGGESVLDVGQAKDWIKVSIQQFSGIEINDFAVSVAKTALWIAEDQMMKETQD 479

Query: 273 --------------SKNIQQGSTLSKDLF---TGKRFHYCLSNPPF-GKKWEKDKDAVEK 314
                            I +G+ L  D          HY + NPPF G      K+   K
Sbjct: 480 LLYAPDWDFLPLKTYTRIHEGNALEMDWNKVIPNYACHYIIGNPPFSGLSALPAKNKKLK 539

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
           + +  ++ R    LPK        +     K      G    A  +S++ +  G      
Sbjct: 540 KQQTEDMNRVFKDLPKHGKLDY--VTAWYEKAADMMQGTNIKASFVSTNSITQGEQV--- 594

Query: 375 SEIRRWLLENDLIEAIV 391
             + + L+E+  +  I+
Sbjct: 595 GILWKHLIEDKNL-TII 610


>gi|304310355|ref|YP_003809953.1| hypothetical protein HDN1F_07090 [gamma proteobacterium HdN1]
 gi|301796088|emb|CBL44292.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 1305

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 48/178 (26%)

Query: 154 VMSNIYEHLI----------RRF-----------GSEVSEGAEDFMTPRDVVHLATALLL 192
            + ++YE L+          R+F                + +  + TP  +V       L
Sbjct: 428 ELGSVYESLLELVPEIDLPARKFGFVGLTSEGSTAGNARKLSGSYYTPDSLVQELIKSAL 487

Query: 193 DP-DDALFKESPG------MIRTLYDPTCGTGGFLTDAMNHVADC----------GSHHK 235
           DP  +      P       +   + DP CG+G FL  A   +A+                
Sbjct: 488 DPVIEQRLAAQPESPVEALLAIRVIDPACGSGHFLLAAARRLAEKLAQLRAASSENGEQS 547

Query: 236 IPPILV---------PHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTLS 283
                            G +  P    +    + +    E  P   L  ++Q G  L 
Sbjct: 548 EQDFRHALREVIATCIFGVDRNPMAVELARTALWLEGFEEGRPLGFLDHHLQVGDALL 605


>gi|78776330|ref|YP_392645.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
 gi|78496870|gb|ABB43410.1| N-6 DNA methylase [Sulfurimonas denitrificans DSM 1251]
          Length = 533

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 60/302 (19%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            S+  +    F TP  + +L +  +L   +         ++T+ +P  G G   +  +  
Sbjct: 22  SSKHRKQFAQFFTPFSIANLMSKWILGNQN---------LKTVLEPAFGLG-IFSRVLLS 71

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
             +           +   +  +                        + NI     +  D 
Sbjct: 72  CKEDIEIKGFEVDKIIFQKAKQ------------------YFSETKNCNIILQDYMYND- 112

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               ++   + NPP+ K  + D   + KE +     +         +   LFL+   ++L
Sbjct: 113 -WKNKYDGIICNPPYFKFHDYDNKNILKEIETNLKCKLNGFT----NLYTLFLLKSIHQL 167

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIA 404
               +  GR A V+ S  L +         ++ +L+++  +  ++ +    +LF      
Sbjct: 168 ----SVNGRCAYVIPSEFLNSDYG----KLVKTYLIKSKTLRHVIVINFEENLFDDALTT 219

Query: 405 TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
             +   SN   +    KVQ  N   L    +               +I+  Y +    + 
Sbjct: 220 ASIIFCSN---DNLTEKVQFTNIKSLEDLSK-------------IEEIISKYPNFSKTEQ 263

Query: 465 SR 466
           + 
Sbjct: 264 TY 265


>gi|194336503|ref|YP_002018297.1| putative type II DNA modification enzyme [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308980|gb|ACF43680.1| putative type II DNA modification enzyme [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1355

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 38/167 (22%)

Query: 154 VMSNIYEHLI----------------RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
              ++YE L+                R       +    + T   +V       LDP   
Sbjct: 418 EFGSVYESLLELHPFTDLLPTPLFDFRHAAGNERKTTGSYYTHAALVESLLQSALDPHID 477

Query: 198 LFKESPGMIRTL-----YDPTCGTGGFLTDAMNHVAD----------------CGSHHKI 236
             ++S    +++      DP CG+G FL  A   +A                      + 
Sbjct: 478 EAEKSTTPEKSILALKVCDPACGSGHFLIAAAQRIARRLARLRAGDEEPSPELLHHTLRE 537

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282
                  G ++ P    +C  G+ +  +E   P   L  +I+ G++L
Sbjct: 538 VIGHCIFGVDINPMAAELCRVGLWLEAMEPGKPLSFLEHHIRVGNSL 584


>gi|296876458|ref|ZP_06900509.1| methylase [Streptococcus parasanguinis ATCC 15912]
 gi|296432451|gb|EFH18247.1| methylase [Streptococcus parasanguinis ATCC 15912]
          Length = 807

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 59/248 (23%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             L ++    +        +   +   ++E  +     E         T  + +H     
Sbjct: 285 DELRELILEHASSSFDWSEISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDP 341

Query: 191 LLD-------------------PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           L                        A   +S       +DP CG+G FLT+    +    
Sbjct: 342 LFLNELKEELNEIRQFKQPKTVEQKAKQFQSKLASLLFFDPACGSGNFLTETYISLRRLE 401

Query: 232 SHHKIP-----------------PILVPHGQELEPETHAVCVAGMLI------------- 261
           +                       +   +G E+     +V    + I             
Sbjct: 402 NEAIKLYMGDAVALDLGQDLVKVKLKQFYGIEINDFAVSVAKTALWIAESQMLEETKDIV 461

Query: 262 -RRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPF--GKKWEKDKDAVEKE 315
              ++  P +    NI QG+ L  D        +  Y + NPPF   +    ++    K 
Sbjct: 462 FANIDFLPLK-SYTNIVQGNALRVDWETVAPKDKLSYIIGNPPFLGHRNVSVEQKDDMKR 520

Query: 316 HKNGELGR 323
             N + GR
Sbjct: 521 IFNNKQGR 528


>gi|261417258|ref|YP_003250941.1| Eco57I restriction endonuclease [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373714|gb|ACX76459.1| Eco57I restriction endonuclease [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327556|gb|ADL26757.1| putative type II DNA modification methyltransferase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 492

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 92/283 (32%), Gaps = 37/283 (13%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             I +    + +    F T  +      +L                 ++ D   G+G   
Sbjct: 11  EFIAQMPKSLRKEYGQFFTSAETACFMASLFDL-------SGLNKSVSILDAGAGSGILA 63

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSKN--I 276
                 +    S  K+  +      E +P    +  + + +  ++ ++   + +  N  I
Sbjct: 64  ISIAERILKQDSSIKVEVVCY----ENDPHVLPLLKSNLDLVKKKYKNFSFKVIEDNYII 119

Query: 277 QQGSTLSKDLF--TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            Q  + + +LF    K++   + NPP+ K  +   +A+              G P   + 
Sbjct: 120 SQRDSFNGNLFAQECKKYDLVIGNPPYKKISKDAPEALAMPVVC-------HGAP---NL 169

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI--VA 392
             LF       L+      G+   +   S  +   A       R++L+ N  +E I    
Sbjct: 170 YFLFASMGIFNLKE----NGQMVYITPRS--WTSGAY--FENFRKYLIGNTSLERIHLFE 221

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
             TD+F + ++     I   +K ++   KV +          R
Sbjct: 222 SRTDVFDKESVLQETMIFKLKKQKKHPSKVVISTTNGNGDFSR 264


>gi|291295623|ref|YP_003507021.1| putative type II DNA modification enzyme [Meiothermus ruber DSM
           1279]
 gi|290470582|gb|ADD28001.1| putative type II DNA modification enzyme [Meiothermus ruber DSM
           1279]
          Length = 1336

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 37/167 (22%)

Query: 154 VMSNIYEHLIR----------RFG-----SEVSEGAEDFMTPRDVVHLATALLLDPDDAL 198
            + ++YE L+            F          +    + TP  +V +     L+P  A 
Sbjct: 416 ELGSVYEQLLELVPEVDVAAAHFALQNRSGNERKTTGSYYTPDALVQVVLDEALEPRLAE 475

Query: 199 FKESPGMIR-----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------------- 238
             ++P   R      + DP  G+G FL  A + +A   +  +                  
Sbjct: 476 ALKTPDPERALLSLRVVDPAVGSGHFLIAAAHRMARALARIRSGEDEPSPEAQRSALRDV 535

Query: 239 -ILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLS 283
                +G ++   +  +C   + +   E   P   L  +I+ G++L 
Sbjct: 536 IRHCLYGVDVNEMSAELCKVALWMEMAEPGKPLGFLDHHIKVGNSLL 582


>gi|295099195|emb|CBK88284.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 3253

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 100/359 (27%), Gaps = 78/359 (21%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
              ++ NA AI   +  +    +A  E+  +L +    + G+    +          YE L
Sbjct: 1668 EKYAANAAAIRTLKQIEAEERLATPEEQEILSRYVG-WGGLANCFEQTSPH-----YEEL 1721

Query: 163  IR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
                    + +  +     F TP  V+                +       + +P+CGTG
Sbjct: 1722 KSLLDSEEYAAARASSLTAFYTPPVVIR--------GIYKALAQMGFTQGNILEPSCGTG 1773

Query: 218  GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             FL                      +G EL+  +  +              +   + NI 
Sbjct: 1774 NFLGLL----------PTDLAGSKAYGVELDSISGRIA------------GQLYQNANIS 1811

Query: 278  QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              +           F   + N PFG  ++      +K H       FG            
Sbjct: 1812 V-NGFETVQMPDSFFDVAVGNVPFG-DFKVLDKRYDKHHWLIHDYFFG------------ 1857

Query: 338  FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
                   K       GG  A + S   L         S +R++L +   +   + LP + 
Sbjct: 1858 -------KTLDKVRLGGIVAFITSKGTLDKEN-----SSVRKYLAQRADLIGAIRLPDNT 1905

Query: 398  F---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            F     T + + +  L        R  +  ++   +       G +           IL
Sbjct: 1906 FKRNAGTEVTSDIIFLQK------RDHITDLDQDWVHLDTDENGIRMNRYFVQHPEMIL 1958


>gi|296125549|ref|YP_003632801.1| D12 class N6 adenine-specific DNA methyltransferase [Brachyspira
           murdochii DSM 12563]
 gi|296017365|gb|ADG70602.1| D12 class N6 adenine-specific DNA methyltransferase, putative
           [Brachyspira murdochii DSM 12563]
          Length = 1047

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 83/284 (29%), Gaps = 54/284 (19%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I +  +  +         +  + YE  + ++  E+ E    + TP+ VV+     +    
Sbjct: 290 IVEELNKYDNTVSQKDPYM--HFYETFLYKYNPELRELRGVYYTPQSVVNFIIDSIDIVL 347

Query: 196 DALFKESPGMIR--------TLYDPTCGTGGFLTDAMN-----HVADCGSHHKIPPILVP 242
              F ++ G+          TL D   GTG FL D+       +  +   ++    I   
Sbjct: 348 KEYFNKNKGLGDALEKETNITLLDFAAGTGTFLLDSFRKALSYYQKNSVKYNPKELINKF 407

Query: 243 HGQELEPETHAVC---VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH------ 293
           +G E     + +    ++  L      +   D   NI   +TL        +        
Sbjct: 408 YGFEFMIAPYTIAHLKISQTLKEEFNYNLEDDERLNIFLTNTLENIDLDESKGKNNIFEE 467

Query: 294 -----------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG-- 334
                                NPP+           E+  K  + G   P L    +G  
Sbjct: 468 LNEEMNLAQKTKEKEILIITGNPPYSGASANKGIFEEEVRKEYKDGLESPPLAITRNGKV 527

Query: 335 -----------SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
                        +  +  A +       GG    + ++S L N
Sbjct: 528 EKEKNPKWLLDDYVKFIRFAQQKIDNQKAGGIFGFISNNSFLDN 571


>gi|87198379|ref|YP_495636.1| putative type II DNA modification enzyme [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134060|gb|ABD24802.1| putative type II DNA modification enzyme [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1319

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 60/213 (28%), Gaps = 50/213 (23%)

Query: 154 VMSNIYEHLI---------RRFGSEVS------EGAEDFMTPRDVVHLATALLLDPDDAL 198
            + ++YE L+           F           + +  + TP  +V       L+P    
Sbjct: 422 ELGSVYEGLLEIRPSLTASGDFQLGTGAKGNDRKTSGSYYTPDSLVECLLDSALNPVLER 481

Query: 199 FKESPGMIR---------TLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILV--- 241
            + S               + DP CG+G FL  A   +AD                    
Sbjct: 482 AEASGVTPEEKVAAILDLKVIDPACGSGHFLLGAARRMADRVARLRNEDAGKEETQAALR 541

Query: 242 ------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL--------SKDL 286
                  HG +  P    +    + I  +    P   L  NI+ G  L         ++ 
Sbjct: 542 DVVSRCIHGVDRNPMAVELAKVALWIESVSPGQPLGFLDANIRCGDALLGVFDLAVLEEG 601

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
              + +     +    K   K    + ++ K G
Sbjct: 602 IPDEAYKPLTGD---SKDAAKFYLKLNRDAKKG 631


>gi|325995949|gb|ADZ51354.1| hypothetical protein hp2018_06581 [Helicobacter pylori 2018]
 gi|325997543|gb|ADZ49751.1| hypothetical protein hp2017_06571 [Helicobacter pylori 2017]
          Length = 1449

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 86/307 (28%), Gaps = 35/307 (11%)

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             +N+++ IA   D       D         L+    LY+  K  +       +  +  + 
Sbjct: 813  GDNIQNPIAKALDKMVLKLSDLGLEGETKDLKN---LYESVKTEAARAKSQKSQQEL-IK 868

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
            N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 869  NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 928

Query: 216  TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            TG F+   ++   D  S    K          ++   ++ + +  +       D      
Sbjct: 929  TGSFIARLLSKENDLISDEALKEKFQNHLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 988

Query: 274  KNIQQGSTL-----SKDL------------------FTGKRFHYCLSNPPFGKKWEKDKD 310
            KNI    +L       D                      +     + NPP+    + + D
Sbjct: 989  KNIALTDSLDYLEEKNDKGVFPLFADLKENQEIKTTMEKQNIRVIIGNPPYSSGAKSEND 1048

Query: 311  -----AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 +  K  K            K+   +   L+             G    V++ S +
Sbjct: 1049 NNQNLSHPKLEKKVYETYGKNSTAKVGATTRDTLIQSIRMASDLLKDKGVLGFVVNGSFI 1108

Query: 366  FNGRAGS 372
             +  A  
Sbjct: 1109 DSKSADG 1115


>gi|208435250|ref|YP_002266916.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208433179|gb|ACI28050.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 1122

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 90/320 (28%), Gaps = 39/320 (12%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
               +  +  +   Y      +        +    F     +    +   N R+++    
Sbjct: 193 SSIFKNFKEYL---YEELSCEDFSDAFAQTLTYSLFIAKLNHPFEKIDLNNVRSSIPK-- 247

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVPDRVMSNIY 159
                N   I E  DF   +  ++    LL +I    + +++               + Y
Sbjct: 248 -----NFAVIREMADFLKRLDAIKDIQWLLNEILSLINHVDMDSILKDLNDDKDPYLHFY 302

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP--------GMIRTLYD 211
           E  +  +  ++ E    + T   VV      L       FK++P               D
Sbjct: 303 ETFLSAYDPKLREKKGVYYTQDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKPLD 362

Query: 212 PTCGTGGFLTDAMNHVADCGS----------HHKIPPILVPHGQELEPETHAVCVAGM-- 259
              GTG FL +A     +                   +   +G E     +A+    +  
Sbjct: 363 FATGTGTFLLEAFRKALEVRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLSQ 422

Query: 260 -LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                 +   + + +  I   +TL +     +   Y   NP F K+    ++  + E+  
Sbjct: 423 AFKEEFKKSLKENDALKIILTNTLIQP---SEIIAYRGLNPIFEKELSNAQEIKKNENIL 479

Query: 319 GELGRFGPGLPKISDGSMLF 338
              G         + G   +
Sbjct: 480 IITGNPPYSGASENKGLFEW 499


>gi|13488153|ref|NP_085860.1| DNA methylase [Mesorhizobium loti MAFF303099]
 gi|14028109|dbj|BAB54701.1| DNA methylase [Mesorhizobium loti MAFF303099]
          Length = 1011

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 79/281 (28%), Gaps = 58/281 (20%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + + S          TP  ++            A  +        + +P  GTG F    
Sbjct: 150 QEYASLARCTQYAHFTPEFIIRAIW--------AGLQRLGWRGGRVLEPGIGTGLFPALM 201

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                          +    G E++P T  +                     I  G   S
Sbjct: 202 PE---------DRRGVSHVTGVEIDPVTARIAR------------LVQPRARIVNGD-FS 239

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                   F   + NPPF  +  +                              F+    
Sbjct: 240 CTDLPAY-FDLAIGNPPFSNRTVRSDRTYRSMGLRLHDY---------------FIARSV 283

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
           + L+     G  AA V S     +G     +S  R+ + ++  + A + LP   F     
Sbjct: 284 DLLKP----GALAAFVTS-----SGTMDKTDSIARKHIAKSADLIAAMRLPEGSFRTDAG 334

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           T++   +     RK  E  G +  ++  ++  + ++EG  R
Sbjct: 335 TDVVVDILFFRKRKVTEPEGDLSWLDIEEVRQATQDEGAIR 375


>gi|291541463|emb|CBL14573.1| DNA methylase [Ruminococcus bromii L2-63]
          Length = 2058

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/415 (13%), Positives = 112/415 (26%), Gaps = 92/415 (22%)

Query: 43   RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
             ++  LE  ++ +  +        +D         ++F          +        +  
Sbjct: 971  YIQKLLEQEKTELLPE-EKTEAPAVD--------RHNF---------RINDDAIG--VGG 1010

Query: 103  YIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD---RVMSN 157
                F +N  AI    + +  + +A  E+  +L +    + G+ +  D            
Sbjct: 1011 AKEKFRNNMAAINLLHELEIENRLATPEEQEVLSQYVG-WGGLSMAFDEHNAAWAEEFKE 1069

Query: 158  IYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            +Y  L    + + +      F TP  V+      L          S G    + +P+CGT
Sbjct: 1070 LYASLSPEEYRAAMESTLTAFYTPPVVIKAMYDAL-----DRLGFSQG---NILEPSCGT 1121

Query: 217  GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            G F       +               HG E++  T  +              +     NI
Sbjct: 1122 GNFFGLLPESMQ----------NSKLHGVEIDSLTGRIAK------------QLYQKANI 1159

Query: 277  QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                   K       F   L N PFG+    D     ++    +                
Sbjct: 1160 AIE-GFEKTNLPDNHFDVVLGNVPFGEIRVNDSRYNAQKFLIHDY--------------- 1203

Query: 337  LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
                    K       G     + S   +          E+R+++ +   +   + LP +
Sbjct: 1204 -----FFAKALDKVRAGSVVMFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDN 1253

Query: 397  LF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
             F     T + + + IL        R +V  I    +       G        + 
Sbjct: 1254 TFKANAGTEVTSDILILQK------RDRVMDIEPDWVHLDTDENGVTMNRYFVEH 1302


>gi|328948587|ref|YP_004365924.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328448911|gb|AEB14627.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2901

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 97/361 (26%), Gaps = 77/361 (21%)

Query: 176  DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             F TP +++     L+               +T+ +P+ G G F                
Sbjct: 705  AFYTPDNLIEKVWELVDAYAPDA--------KTVLEPSAGVGKF--------------AN 742

Query: 236  IPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P       EL+  +  +     ++    +        + +  G    K  +   +   
Sbjct: 743  NRPDNKFTMHELDETSARI---NKILHPEADVIQGAFQKQFLDDGERFLKIGYEQSKHDV 799

Query: 295  CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             + NPP+GK  +K K   E    +     F                 +A  L+   +   
Sbjct: 800  VIGNPPYGKYNDKYKGLGEGREFDRYEEYF-----------------IARGLDALKDEKS 842

Query: 355  RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK 414
              A V+ S  L            ++ +     I     LP   F  T + T + I+  ++
Sbjct: 843  VLAFVVPSGFLSTADDRQ-----KKVIASKGEILDAYRLPEGTFSTTEVGTDILIMRKKE 897

Query: 415  TEERRGKV---QLINATDL-----------WTSIRNEGKKRRII--------------ND 446
              + R  +    L +                T     GKK   +               D
Sbjct: 898  NLDDRENISSELLSDGEWFKNHPEKILGEVKTRTNRFGKKEEYVAVHEGLSVQDELNKID 957

Query: 447  DQRRQILDI-YVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWR 505
                +I       ++  + S       +  +    + P    + +      RL    T  
Sbjct: 958  SFVDEIKKANQTEKKEAEKSFETQLDEYNRKYWGPVGPGDTRYDISPVTDERLSEIKTLS 1017

Query: 506  K 506
            K
Sbjct: 1018 K 1018


>gi|255067377|ref|ZP_05319232.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
 gi|255048347|gb|EET43811.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
          Length = 262

 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 159 YEHLIRRFGSE---VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
           YE  +     +    +E    + TP  V  +   L+        ++      +L +P CG
Sbjct: 88  YEDFLGELYMDLGASNERNGQYFTPMAVSRVMAKLVGIDTAEKLEKQ--RFVSLLEPCCG 145

Query: 216 TGGFLTDAMNHVADCGS 232
           +G  L     H+AD G 
Sbjct: 146 SGANLLAFAEHIADSGK 162


>gi|291541334|emb|CBL14445.1| DNA methylase [Roseburia intestinalis XB6B4]
          Length = 2753

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 72/259 (27%), Gaps = 59/259 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + + +      F TP  V+      L          S G   ++ +P+CGTG F    
Sbjct: 1244 EEYRAAMESTLTAFYTPPVVIKGMYEAL-----DRLGFSEG---SILEPSCGTGNFFGLL 1295

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             + +A              HG E++  T  +              +     NI       
Sbjct: 1296 PDSMAGSK----------LHGVEIDELTGRIA------------GQLYQKANIAVQ-GFE 1332

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHL 342
            +       F   + N PFG                    R+        +    L   + 
Sbjct: 1333 ETKLPDDHFDVVIGNVPFG-------------DFKVNDSRY--------NAQKFLIHDYF 1371

Query: 343  ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRT 401
              K       GG  A + S   +          E+R+++ +   +   + LP + F    
Sbjct: 1372 FAKALDKVRTGGVVAFITSKGTM-----DKASPEVRKYIAQRAELLGAIRLPDNTFRANA 1426

Query: 402  NIATYLWILSNRKTEERRG 420
                   IL  +K++    
Sbjct: 1427 GTEVTSDILFLQKSDRITD 1445


>gi|225032080|gb|ACN79573.1| ApyPI [synthetic construct]
          Length = 948

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 74/282 (26%), Gaps = 71/282 (25%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--- 195
             +  +     +   V  ++++ +  +   E   G  +  T +  +      L   +   
Sbjct: 314 LLNACDFDWSKIDVSVFGSLFQLVKSK---EARRGDGEHYTSKTNILKTIGPLFLDELRA 370

Query: 196 -DALFKESPG-------------MIRTLYDPTCGTGGFLTDAMNHVADCGSH-------- 233
                  +P                    DP CG G FL  A   +    +         
Sbjct: 371 QADKLVSNPATPVRKLEEFRDSLAAHIFCDPACGAGNFLLTAYKELRRIETDLIVAIRQR 430

Query: 234 ------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-------- 273
                        +   I   +G EL      +    M +   +++     +        
Sbjct: 431 RGETGMSLNIEWEQKLSIGQFYGFELNWWPAKIAETAMFLVDHQANKELANAVGRPPQRL 490

Query: 274 -----KNIQQGSTLSKDLFTGKRF----HYCLSNPPFG---KKWEKDKDAVEKEHKNGEL 321
                 +I  G+ L+ D            +   NPPF     + ++  + ++   +   +
Sbjct: 491 PITITAHIVHGNALALDWTEALPKAVGETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKNI 550

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            R                      L+L     GR A V ++S
Sbjct: 551 SRLDYVT-----------CWHIKSLDLFSTRNGRFAFVTTNS 581


>gi|160884359|ref|ZP_02065362.1| hypothetical protein BACOVA_02337 [Bacteroides ovatus ATCC 8483]
 gi|255691674|ref|ZP_05415349.1| helicase domain protein [Bacteroides finegoldii DSM 17565]
 gi|156110098|gb|EDO11843.1| hypothetical protein BACOVA_02337 [Bacteroides ovatus ATCC 8483]
 gi|260622746|gb|EEX45617.1| helicase domain protein [Bacteroides finegoldii DSM 17565]
          Length = 1651

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 68/254 (26%), Gaps = 32/254 (12%)

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPT 213
            + N+YE   +       E      TP + V      + D     F  S       + DP 
Sbjct: 868  IKNLYEKFFKGAFPLTVEKLGIVYTPVECVDFIIHSVNDILKREFNTSLSDENVHILDPF 927

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRD 271
             GTG F+T  +          +       H  E+    + +    +  +   L       
Sbjct: 928  TGTGTFITRLLQSGLIKPEDMERKYRNEIHCNEIVLLAYYIADVNIEAVYHDLMKPDHYV 987

Query: 272  LSKNIQQGST----------LSKDLFTGKR----------FHYCLSNPPFGKKWEKDKDA 311
                I    T          LS++ F                  + NPP+    +   D 
Sbjct: 988  NYDGICLTDTFQLAETKQQSLSQEFFKENSEGVLRQKKAPIRVIIGNPPYSIGQKSANDN 1047

Query: 312  VEKEHKNGELGRFGPGLPKISDGSM---LFLMHLANKLE-----LPPNGGGRAAIVLSSS 363
                       R        S  ++   L+  ++             + GG  A + + S
Sbjct: 1048 AANMTYPVLDKRVSDTYAAKSSANLTKALYDSYIKAFRWATDRIADNSDGGIVAFISNGS 1107

Query: 364  PLFNGRAGSGESEI 377
             L +G A  G    
Sbjct: 1108 WL-DGNAQDGFRAC 1120


>gi|307637357|gb|ADN79807.1| hypothetical protein hp908_0680 [Helicobacter pylori 908]
          Length = 1622

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 86/307 (28%), Gaps = 35/307 (11%)

Query: 97   RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
             +N+++ IA   D       D         L+    LY+  K  +       +  +  + 
Sbjct: 813  GDNIQNPIAKALDKMVLKLSDLGLEGETKDLKN---LYESVKTEAARAKSQKSQQEL-IK 868

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
            N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 869  NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 928

Query: 216  TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            TG F+   ++   D  S    K          ++   ++ + +  +       D      
Sbjct: 929  TGSFIARLLSKENDLISDEALKEKFQNHLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 988

Query: 274  KNIQQGSTL-----SKDL------------------FTGKRFHYCLSNPPFGKKWEKDKD 310
            KNI    +L       D                      +     + NPP+    + + D
Sbjct: 989  KNIALTDSLDYLEEKNDKGVFPLFADLKENQEIKTTMEKQNIRVIIGNPPYSSGAKSEND 1048

Query: 311  -----AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 +  K  K            K+   +   L+             G    V++ S +
Sbjct: 1049 NNQNLSHPKLEKKVYETYGKNSTAKVGATTRDTLIQSIRMASDLLKDKGVLGFVVNGSFI 1108

Query: 366  FNGRAGS 372
             +  A  
Sbjct: 1109 DSKSADG 1115


>gi|325923272|ref|ZP_08184946.1| putative helicase [Xanthomonas gardneri ATCC 19865]
 gi|325546251|gb|EGD17431.1| putative helicase [Xanthomonas gardneri ATCC 19865]
          Length = 1417

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 97/374 (25%), Gaps = 56/374 (14%)

Query: 110  NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            N   + +  +     + L      Y   K  +            V+  +Y+   R    +
Sbjct: 820  NVLDVLDAQNLQKEASTLRG---FYASVKLRAEGIDSAVGKQKIVV-ELYDKFFRNAFPK 875

Query: 170  VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVA 228
            ++E      TP +VV      +       F ++ G     + DP  GTG F+T  +    
Sbjct: 876  MTERLGIVYTPVEVVDFILHSVDHLLRKEFGQTLGSPGVHILDPFTGTGTFITRLLQSGL 935

Query: 229  DCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDL 286
                          H  EL    + +    +      +         + I    T     
Sbjct: 936  IKPEELAHKYKHEIHANELVLLAYYIAAINIEATYHGIAGGDYA-PFEGICLTDTFQMYE 994

Query: 287  FTG------------------KRFHYCLSNPPFGKKWEKDKD--------AVEKEHKNGE 320
                                       + NPP+    + + D        A+++  ++  
Sbjct: 995  KEDLVDQLLVDNSRRRKRQKALDIRVIVGNPPYSVGQKSENDNNDNVEYVALDERIRSTY 1054

Query: 321  LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
              R    L   S G     +             G    V ++  L    A      +R+ 
Sbjct: 1055 AARSQATL---SKGLYDSYIRAIRWASDRIGNAGVLGFVTNAGFLEANTADG----LRKC 1107

Query: 381  LLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLI 425
            L E      +  L  +              +F   +     + +L      ++ G++   
Sbjct: 1108 LAEEFSDIYVFHLRGNQRTSGETSRKEGGKIFGSGSRAPIAISLLVKNPHAKQHGRIFFH 1167

Query: 426  NATDLWTSIRNEGK 439
            +  D  +      K
Sbjct: 1168 DIGDYLSREDKLEK 1181


>gi|172039713|ref|YP_001799427.1| putative methylase [Corynebacterium urealyticum DSM 7109]
 gi|171851017|emb|CAQ03993.1| putative methylase [Corynebacterium urealyticum DSM 7109]
          Length = 646

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 54/217 (24%), Gaps = 57/217 (26%)

Query: 167 GSEVSEGAEDFMTP-----RDVVHLATALLLDPDDALFKESPGMI------------RTL 209
             E      +  T      + +  L    L    D L       +               
Sbjct: 336 SKEARRDDGEHYTSEKNILKTIGPLFLDELRAEADRLIAAKSTPVAKLRAFRDSLADMVF 395

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH--------------------HKIPPILVPHGQELEP 249
            DP CG+G FL  A   +    +                      +   I   +G EL  
Sbjct: 396 CDPACGSGNFLIVAYRELRKIETDVIVAIREREGTTDLALDISWEQKLSIGQFYGIELNW 455

Query: 250 ETHAVCVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLF----TGKRF 292
               +    M +   +++                  + +I+  + L+ D           
Sbjct: 456 WPARIAETAMFLVDHQANRELADRVGLAPDRLPISITAHIEHANALAVDWLEILPEAAGM 515

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGP 326
            Y   NPPF  ++ K  +  E   +   N   G    
Sbjct: 516 TYIFGNPPFIGQYTKTSEQTEDMRRVWGNDYDGYLDY 552


>gi|254166687|ref|ZP_04873541.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|289596069|ref|YP_003482765.1| N-6 DNA methylase [Aciduliprofundum boonei T469]
 gi|197624297|gb|EDY36858.1| N-6 DNA Methylase family [Aciduliprofundum boonei T469]
 gi|289533856|gb|ADD08203.1| N-6 DNA methylase [Aciduliprofundum boonei T469]
          Length = 967

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 111/362 (30%), Gaps = 70/362 (19%)

Query: 114 IFEDFDFSSTIARLEKAGLLYKICK-------NFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           I   FD  + I +     L  +I +        F  ++  P+       + I+   I   
Sbjct: 223 ILSGFDIRN-ITKEGIRELFRRITEINYRPIYKFDILDTIPEHYIKDTFTLIWNLKIENI 281

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES---PGMIRTLYDPTCGTGGFLTDA 223
             E+       + P+++  +  A    P  A              ++DP CG+G  LT A
Sbjct: 282 RFELPGRLFHELMPKEIKKMLAAFYTRPIAAEILSCVTINNAEEVVFDPACGSGTILTAA 341

Query: 224 MNHVADCGSHHKIPPI----LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                +  +  + P         +G ++ P    +  A +               NI + 
Sbjct: 342 YRRKRELWNKQEDPHKLFCEEQIYGTDIMPFAVNLTTANLASLN---PKITIEKMNIARA 398

Query: 280 STL---------------------------SKDLFTGKR------FHYCLSNPPFGKKWE 306
            +L                           SK++   +           L NPPF K   
Sbjct: 399 DSLKLELNVPIKNGLSKLERYGIPISSNIKSKNMQGDEYDMVLDLMDVVLMNPPFTKIER 458

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
             K  ++ E     +G           G +    H     ++     G    V+  + L 
Sbjct: 459 GVKKYIKIERFKSRVG-----------GEIGLWGHFIALADMILKPNGMFGGVIPINIL- 506

Query: 367 NGRAGSGESEIRRWLLENDLI-EAIVALPTDL-FFRTNIATYLWILSNR-KTEERRGKVQ 423
                  ESE  R ++  + +   ++    +  F  ++    + I++ + K++    KV+
Sbjct: 507 ----RGRESEKVRKIVFEEWLPLYVIKSTMNYGFSESSEYRDILIIAKKTKSKPINHKVK 562

Query: 424 LI 425
            +
Sbjct: 563 FV 564


>gi|332673515|gb|AEE70332.1| helicase domain protein [Helicobacter pylori 83]
          Length = 1380

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 97/369 (26%), Gaps = 54/369 (14%)

Query: 43  RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           RL+   E          +       SNI  +  + +       TS      +      +N
Sbjct: 527 RLKDIFEKNPEIFHGFLDSLKGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 580

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +++ I+   D                 L+    LY+  K    +          ++ N+Y
Sbjct: 581 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 636

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218
               +    + SE      TP +VV                 +      T++DP  GTG 
Sbjct: 637 NTFFKVAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 696

Query: 219 FL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           F+    +  +        K   +      ++    + + +  +       D      KNI
Sbjct: 697 FIARLLSKENGLISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQNRDGSLKNFKNI 756

Query: 277 QQGSTLS-----------------------KDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
               +L                        KD    K     + NPP+    +   +  +
Sbjct: 757 ALTDSLDFYEEKNDKGVFDLFKDLKENKEIKDTLADKNIRVIIGNPPYSAGAKSQNNNNQ 816

Query: 314 K----------EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                        K G+      G+    D     L+             G    V++ S
Sbjct: 817 NLSHPKLEKKVYEKYGKNSTAKVGVT-TRDT----LIQSICMASELLKDRGVLGFVVNGS 871

Query: 364 PLFNGRAGS 372
            + +  A  
Sbjct: 872 FIDSKSADG 880


>gi|161617579|ref|YP_001591544.1| hypothetical protein SPAB_05438 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366943|gb|ABX70711.1| hypothetical protein SPAB_05438 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 227

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 43/216 (19%)

Query: 94  TNTRNNLESYIASFSDNAK-----AIFEDF--------------------DFSSTIARLE 128
            N  N+ +++I+ F+  A+      +FEDF                     +   +AR E
Sbjct: 2   KNLINHEKAFISLFNQTARYHHRHQVFEDFISCSVIALQNALSFCEKREQKYLRIVARYE 61

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           K  ++  + +  + +    D  P   +  ++  L         +    F TP DV  +  
Sbjct: 62  KKDVVR-MAELLAHVVNGLDDSPGDFLGQVFMQL-----ELGDKYRGQFFTPWDVGIMMA 115

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            + L      F + P +  TL +P CG G         + D G        +     +++
Sbjct: 116 RMQLGNVADNFADKPFI--TLAEPACGAGCMALAFATVLRDAGYSPHRYLWVSAT--DID 171

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           P    +    + +  +  +        +  G++L  
Sbjct: 172 PLAAGMAYIQLTLCGVPGE--------VVIGNSLCD 199


>gi|116326651|ref|YP_796570.1| superfamily II DNA/RNA helicase [Lactococcus lactis subsp. cremoris
            SK11]
 gi|116109019|gb|ABJ74139.1| DNA or RNA helicase of superfamily II [Lactococcus lactis subsp.
            cremoris SK11]
          Length = 1560

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 85/305 (27%), Gaps = 43/305 (14%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             E   F+     LE    LY+         +       +++  +Y+   +      +E  
Sbjct: 800  LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKSTTERL 855

Query: 175  EDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232
                TP +VV      + D     F ++       + DP  GTG F+   +N++ +    
Sbjct: 856  GIVFTPIEVVDFIIHSVDDVLKKHFGKALASKDVHILDPFTGTGTFIVQTLNYLKEQMDA 915

Query: 233  ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282
                            H  E+   ++ +    +     E +         + I    T  
Sbjct: 916  GKTSLAEITRKFTQELHANEIVLLSYYIAAINIEATFDEINGEEKGYVPFEGIVLTDTFE 975

Query: 283  ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKD-----AVEKEHKNG 319
               ++D      F                  + NPP+ K    D D        +  K+ 
Sbjct: 976  SAETEDTLDDDYFGTNDARLKRQQEVPITAIIGNPPYSKGQSNDNDNNKNLEYPELFKSV 1035

Query: 320  ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                          G     +          NG G  A V + S + +  A      +R+
Sbjct: 1036 ANTYVKHSKTSSVLGMYDSYVLSIRWASNRLNGKGVVAFVSNGSYIDSQSADG----LRK 1091

Query: 380  WLLEN 384
             L E 
Sbjct: 1092 SLYEE 1096


>gi|296137341|ref|YP_003644583.1| type III restriction protein res subunit [Thiomonas intermedia K12]
 gi|295797463|gb|ADG32253.1| type III restriction protein res subunit [Thiomonas intermedia K12]
          Length = 1676

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 94/336 (27%), Gaps = 46/336 (13%)

Query: 158  IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGT 216
            +Y+   R    +++E      TP +VV      +     + F ++ G     + DP  GT
Sbjct: 896  LYDKFFRNAFPKMTERLGIVYTPVEVVDFILHSVAHLLQSEFGQTLGSPGVHILDPFTGT 955

Query: 217  GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSK 274
            G F+T  +                  H  E+    + +    +  +   +         +
Sbjct: 956  GTFITRLLQSGLIEPEQLPAKYKSEIHANEIVLLAYYIAAINIEAVYHGI-VGGDYQPFE 1014

Query: 275  NIQQGSTL------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             I    T                    +           + NPP+    +   D  E   
Sbjct: 1015 GICLTDTFQLYEKEDLIDALLEKNSARRKRQKKLDIRVIVGNPPYSDGQDSANDINENIE 1074

Query: 317  KNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                  R      + SD  M   L+  ++             G    V ++  L    A 
Sbjct: 1075 YPHLDARIRSTYAERSDIRMVRSLYNSYIRAIRWASDRIGNAGVIGFVTNAGFL---SAI 1131

Query: 372  SGESEIRRWLLENDLIEAIVALP--------------TDLF-FRTNIATYLWILSNRKTE 416
            S +  +RR L E      ++ L                ++F   +     + +L      
Sbjct: 1132 SSDG-MRRCLAEEFSSLYVLHLRGNARTSGELRRKEKDNVFGMGSRAPIAITLLVKNPAA 1190

Query: 417  ERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
               GK+   +  D  +      + +++ +     ++
Sbjct: 1191 AHPGKIHFHDIGDYLSKEEKLAEVQKLYSIKGIGEV 1226


>gi|303233580|ref|ZP_07320238.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
 gi|302495324|gb|EFL55072.1| helicase C-terminal domain protein [Finegoldia magna BVS033A4]
          Length = 3641

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/399 (14%), Positives = 121/399 (30%), Gaps = 72/399 (18%)

Query: 31   FGKVILPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
            + +  LPF+ L+ ++          L   R    +K L       +  + ++    +   
Sbjct: 1769 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNNLIRTDRENIEG 1828

Query: 83   TSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
             SE SL      N   NL       ++  A  + +  +  +  AR ++  +L K      
Sbjct: 1829 VSEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGG 1888

Query: 142  GIELHPDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
              ++  +          + + E+L    +          F TP+ V+             
Sbjct: 1889 LSDIFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE-------- 1940

Query: 198  LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                       + +P+ GTG F+ +    + +             +G EL+  +  +   
Sbjct: 1941 SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK- 1989

Query: 258  GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                           + NI Q     +  F+   F   + N PFG     +    ++E++
Sbjct: 1990 -----------ELYPNSNI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKVADREYE 2032

Query: 318  NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                             + L   +   K       GG  A +       +G       ++
Sbjct: 2033 RN---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDV 2072

Query: 378  RRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            RR++ E       + LP   F     T + + +  L  R
Sbjct: 2073 RRYISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKKR 2111


>gi|300781907|ref|YP_003739142.1| hypothetical protein EbC_pEb10200850 [Erwinia billingiae Eb661]
 gi|299060173|emb|CAX53363.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 226

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 16/168 (9%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A LL  +           D      + +++  L         +    F TP DV  +  +
Sbjct: 68  AALLGHVVMAI-------DQERCDFLGSVFMEL-----ELGDKYRGQFFTPWDVSQMMAS 115

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           + L   DAL +    +  TL +P  G G  +       A  G        +     +++P
Sbjct: 116 MQLSGIDALMQAQDFI--TLQEPASGAGCMVIAFAEEFAKRGYTVSEQLWVSVT--DVDP 171

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
               +    + +  + ++     +  +++  TL   L    R+   L 
Sbjct: 172 LAANMSYIQLSLCGIAAEVVTGHALTLERRRTLYTPLHYTGRWAVKLG 219


>gi|90581558|ref|ZP_01237350.1| hypothetical protein VAS14_00096 [Vibrio angustum S14]
 gi|90437223|gb|EAS62422.1| hypothetical protein VAS14_00096 [Vibrio angustum S14]
          Length = 1587

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 89/295 (30%), Gaps = 70/295 (23%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRR-------FGSEVSEGAEDFMTPRDVVHLA 187
           +I  NF+G     +             L+R        F +  +     F TP+ ++   
Sbjct: 49  EIIDNFNGFGEISEAFNQDHKDY---DLLRSCFVSDKAFQTARASTPTSFYTPKFIIDSM 105

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
              L+         + G    + +P+CGTG         +             V    EL
Sbjct: 106 YRCLV-----RLGFNEG---NIIEPSCGTG-------RFIKSLPDTINAKVTAV----EL 146

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +  +  +     L+            +N++            K F   ++N PF      
Sbjct: 147 DETSGRLAR---LLNPKAKILINQRFENVKL----------DKNFSLAITNVPFSSNKAM 193

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            K+ ++  + +                          K     + GG  A+V+S+  L  
Sbjct: 194 TKELLDTSNLHSY---------------------FIAKALHSVHNGGFVAVVVSTWLL-- 230

Query: 368 GRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRG 420
               S  ++ R+ + +    + A   LP ++F  T+ +  + I     K   R  
Sbjct: 231 ---DSISNKNRKAIFKAGGELVAGARLPNNVFKGTSTSADVLIFQKVEKPMNRAW 282


>gi|255015071|ref|ZP_05287197.1| putative helicase [Bacteroides sp. 2_1_7]
          Length = 1000

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 48/214 (22%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP ++      +L           P     + D  CG G F    
Sbjct: 60  EYAEAKKEFEMGQFFTPHEICRDMVDML----------CPVSSEMVLDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                     + +P     +G +++ +  +V                    +I++     
Sbjct: 107 ----------NHLPNPHNAYGFDIDGKAVSVAR------------YLYPEAHIEKCD--I 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  +  +RF   + NPPF  K+   K + E             G+        L ++   
Sbjct: 143 RQYYPEQRFDVIIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPAGI--------LMVIVPC 193

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           + ++       R A + +    F G+   G S  
Sbjct: 194 SFMQSGFWEKTRIAGI-NGRFSFVGQTKLGPSAF 226


>gi|240147298|ref|ZP_04745899.1| putative superfamily II DNA and RNA helicase [Roseburia
           intestinalis L1-82]
 gi|257200514|gb|EEU98798.1| putative superfamily II DNA and RNA helicase [Roseburia
           intestinalis L1-82]
          Length = 1438

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 95/357 (26%), Gaps = 70/357 (19%)

Query: 105 ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN-IYEH 161
             F  N +AI   E  +  S +A  E+  +L +        +   ++     +     + 
Sbjct: 84  EKFRRNVEAIRMLEQIESESRLATPEEQKILSQYVGWGGLADAFDESKSAWAVEYRELKE 143

Query: 162 LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           L+    + S          T   ++               +        + +P  G G F
Sbjct: 144 LLSDAEYASARESTLNAHYTSPMIIRSIYE--------ALENMGFEKGNVLEPAMGIGNF 195

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                  + +             +G EL+  T  +              +     +I+  
Sbjct: 196 FGMLPEKMQE----------SRLYGVELDGITGRIAK------------QLYPKVDIK-I 232

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
           +   K  +    F   + N PFG+    DK   +      +                   
Sbjct: 233 TGFEKTDYPNDFFDVAIGNVPFGQYKVADKQYDKNNFLIHDY------------------ 274

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
                K       GG  A V S   +          E+R++L +   +   V LP   F 
Sbjct: 275 --FFAKTLDKVRPGGVVAFVTSKGTMDKKSP-----EVRKYLAQRAELLGAVRLPNTAFK 327

Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
               T + + +  L        R +V  +    +  S    G        +    I+
Sbjct: 328 ENAGTEVTSDILFLKK------RDRVMDLEPEWVHLSEDENGIAMNSYFVEHPEMIV 378


>gi|224024763|ref|ZP_03643129.1| hypothetical protein BACCOPRO_01491 [Bacteroides coprophilus DSM
           18228]
 gi|224017985|gb|EEF75997.1| hypothetical protein BACCOPRO_01491 [Bacteroides coprophilus DSM
           18228]
          Length = 1111

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 112/369 (30%), Gaps = 74/369 (20%)

Query: 104 IASFSDNAKAIFED--FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + S S N KAI            A  E+  +L +    F GI+   D   D+ +      
Sbjct: 6   LTSLSANIKAIETAVAIRIQGRTATQEEKTILAQY-SGFGGIKDVLDLGTDKPLDKGVSE 64

Query: 162 LIRRFGSEVSEGAE-------------------DFMTPRDVVHLATALLLDPDDALFKES 202
           L+ R    +   A                     F TP          +       F  +
Sbjct: 65  LLNRLLDALRTLAGGDEAACRSLVESIKSSVLTTFYTP----QFLIDAVAAQIHGTFFAN 120

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              + +  +P+ G GGFL  AM                        P TH        I 
Sbjct: 121 DLQMHSFLEPSAGIGGFLPVAM------------------------PGTHNYAFEKDTIT 156

Query: 263 RLESDPRRDLSKNIQQG-STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            L      + +  I  G  T+       ++F    SN PFG      +       K G  
Sbjct: 157 GLVLSLLYEDATTITAGFETIDTQELEHRKFDVIASNIPFG----NFRVFDADLWKKG-- 210

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           G +      I +    F+  +        + GG  A V S          +G   +R +L
Sbjct: 211 GIYEQATKTIHN--YFFVKAM-----ELLSEGGLLAFVTSRGVADT----AGNRFVREYL 259

Query: 382 LENDLIEAIVALPTDLFFRTN---IATYLWILSN--RKTE-ERRGKVQLINATDLWTSIR 435
           + +  + + + LP  LF +T+   + + L I      K     R ++ L  A +++    
Sbjct: 260 VNHADLVSAIRLPDALFMQTSGIEVGSDLLIFQKHTNKAALSAREQMFLQVAKEMYDMNG 319

Query: 436 NEGKKRRII 444
              +    +
Sbjct: 320 TMTENANRL 328


>gi|237712978|ref|ZP_04543459.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237717780|ref|ZP_04548261.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|256842587|ref|ZP_05548088.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262409571|ref|ZP_06086112.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446953|gb|EEO52744.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229452879|gb|EEO58670.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|256735724|gb|EEU49057.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262352585|gb|EEZ01684.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 241

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 45/133 (33%), Gaps = 18/133 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ +++   +             F TP  V  L   +         +      +++ D 
Sbjct: 74  DVLGDMFMECVSH------GNNGQFFTPIHVADLMACMG--------ENRLKPKQSVCDS 119

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  A+   A+     ++      +G +++     + V  +++  +  +     
Sbjct: 120 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 175

Query: 273 SKNIQQGSTLSKD 285
           +  +Q   +   D
Sbjct: 176 TLTMQHWRSYHID 188


>gi|69244404|ref|ZP_00602820.1| conserved domain protein [Enterococcus faecium DO]
 gi|258614769|ref|ZP_05712539.1| adenine-specific methyltransferase [Enterococcus faecium DO]
 gi|260562412|ref|ZP_05832926.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|293560724|ref|ZP_06677203.1| adenine-specific methyltransferase [Enterococcus faecium E1162]
 gi|293566159|ref|ZP_06678562.1| adenine-specific methyltransferase [Enterococcus faecium E1071]
 gi|294618784|ref|ZP_06698311.1| adenine-specific methyltransferase [Enterococcus faecium E1679]
 gi|294622220|ref|ZP_06701280.1| adenine-specific methyltransferase [Enterococcus faecium U0317]
 gi|314938555|ref|ZP_07845839.1| conserved domain protein [Enterococcus faecium TX0133a04]
 gi|314940900|ref|ZP_07847806.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|314948079|ref|ZP_07851481.1| conserved domain protein [Enterococcus faecium TX0082]
 gi|314952037|ref|ZP_07855060.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|314991918|ref|ZP_07857373.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|314995176|ref|ZP_07860290.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|68196345|gb|EAN10773.1| conserved domain protein [Enterococcus faecium DO]
 gi|260073336|gb|EEW61677.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|291590085|gb|EFF21877.1| adenine-specific methyltransferase [Enterococcus faecium E1071]
 gi|291594972|gb|EFF26322.1| adenine-specific methyltransferase [Enterococcus faecium E1679]
 gi|291598262|gb|EFF29355.1| adenine-specific methyltransferase [Enterococcus faecium U0317]
 gi|291605315|gb|EFF34770.1| adenine-specific methyltransferase [Enterococcus faecium E1162]
 gi|313590585|gb|EFR69430.1| conserved domain protein [Enterococcus faecium TX0133a01]
 gi|313593502|gb|EFR72347.1| conserved domain protein [Enterococcus faecium TX0133B]
 gi|313595827|gb|EFR74672.1| conserved domain protein [Enterococcus faecium TX0133A]
 gi|313600258|gb|EFR79101.1| conserved domain protein [Enterococcus faecium TX0133C]
 gi|313642112|gb|EFS06692.1| conserved domain protein [Enterococcus faecium TX0133a04]
 gi|313645495|gb|EFS10075.1| conserved domain protein [Enterococcus faecium TX0082]
          Length = 335

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 109/341 (31%), Gaps = 55/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +NA+ + +D+       +   E    +  + +    +   P+         + 
Sbjct: 27  SFLEAYVENAENLIDDYQVRVVDGVPTKETTQRITALYEELKKLSFEPEEWR-----RLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +        A   +TP  +  L   L+          +      + D   G G  
Sbjct: 82  QLLLLKGSQTEHLQANHQLTPDSIGFLFVFLI-----EQLYTNKKAPVKILDIAAGMGNL 136

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++++ G   +        G +++    AV  +                 N+Q  
Sbjct: 137 LLTVLLNLSNAGYQTEGI------GVDIDDTLLAVAAS----------TSDLTQANVQY- 179

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D           + +S+ P G     +K        + G            S   
Sbjct: 180 --FHQDGLQELLIDPVDFAISDLPIGYYPNDEKAKEFLTSTEEGH-----------SYAH 226

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L L      ++    G      ++ S  L   ++     EI++W  E   ++ ++ LP 
Sbjct: 227 HLLLEQSMKYVKPDGFGL----FLMPSGFLETDQSE----EIKKWFKEEGYLQGMIQLPD 278

Query: 396 DLFFRTNIATYLWILSNRKTEERR-GKVQLINATDLWTSIR 435
           +LF        + IL  +  + ++  +V L+    L    +
Sbjct: 279 ELFRNKQSQKSILILQKKGPQAQQVKEVLLVKLASLKEPEK 319


>gi|60680772|ref|YP_210916.1| hypothetical protein BF1252 [Bacteroides fragilis NCTC 9343]
 gi|60492206|emb|CAH06971.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 1016

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/307 (14%), Positives = 100/307 (32%), Gaps = 50/307 (16%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +SN+YE  I +   +  E    + TP  +V      L +  +       G    + DP C
Sbjct: 280 ISNVYELFIGK---DNQEKEGAYYTPLFLVDYI---LKETIENKLNTQDGYECKVLDPAC 333

Query: 215 GTGGFLTDAMNHV-------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           G+G FL + +  +              +  +  K        G + +     V +  + +
Sbjct: 334 GSGIFLVETLRKIIEKYIASGVDVKSTEFKNEIKEITKRNIFGIDKDLNAVQVAIFSIYL 393

Query: 262 RRLE----SDPRRDLSKNIQQGSTLSKDLFTGK----------RFHYCLSNPPFGKKWEK 307
             L+              +   +    D F  +          +F + + NPP+      
Sbjct: 394 TLLDYLDPPAIAEFKFPCLINENFFESDFFNEETEFNILFKDIKFDFIVGNPPWKGGGIG 453

Query: 308 DKDA----VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           D  +      K+ +     +F   +   ++  +        ++    +   + A+++ SS
Sbjct: 454 DLGSKYLKNRKKREKELSKKFDIAI---NNNEIA--EGFVFRVSDFCSDKTQVALIIRSS 508

Query: 364 PLFN-GRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTN----IATYLWILSNRKT 415
            L+N G      S  R++ LE   I+ +  L     ++F ++N        +      K 
Sbjct: 509 SLYNLGYNKKHNSPFRQYWLEEFFIDRVFELAPVRHEVFEKSNDPAIAPAAILFYRYAKG 568

Query: 416 EERRGKV 422
                 +
Sbjct: 569 VNTNNNI 575


>gi|295107188|emb|CBL04731.1| N-6 DNA Methylase. [Gordonibacter pamelaeae 7-10-1-b]
          Length = 914

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 89/325 (27%), Gaps = 39/325 (12%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA--E 175
           F+       L +A  L  + +                + + Y H +       ++     
Sbjct: 283 FNSPPYFDSLPEA-TLSDLVQ----FNGLLQMCDLDQLDSRYRHRLLEESISSAKRQVSG 337

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            + TP  +  L   L +                 +D  CGTG                  
Sbjct: 338 QYPTPEPLARLMAELGVRN----------ATGHAWDCCCGTGTIGKALWERKVKLTEPVM 387

Query: 236 IPPILVPHGQ----ELEPETHAVCVA---------GMLIRRLESDPRRDLSKNIQQGS-- 280
                  +      ++      V             +L+   ++    +    ++     
Sbjct: 388 DDAADRAYRTTWLSDIHDFPLQVATLALSPREHIDSLLLVFQKNAFEVEPGTMVEFIDPS 447

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           T  +      RF    SN P+     K+     +            G+       +    
Sbjct: 448 TGEEVGKAVPRFDTIASNLPYVDFNTKEIGRYSQIKDELRQEARAAGIKLHDRNDL--YC 505

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGS-GESEIRRWLLENDLIEAIVALPTDLFF 399
           +    LE   N GG A ++ S++ LF+    S  E    ++ +E   +          F 
Sbjct: 506 YFCLYLERLLNDGGVACLLTSNTWLFSQAGVSFFEMLALKYQIEGVFVNG----QARWFH 561

Query: 400 RTNIATYLWILSNRKTEERRGKVQL 424
           +T +   L +L  +K  +    V++
Sbjct: 562 KTKVMNALLVLRKKKPGDTPSDVRM 586


>gi|134296218|ref|YP_001119953.1| hypothetical protein Bcep1808_2116 [Burkholderia vietnamiensis G4]
 gi|134139375|gb|ABO55118.1| hypothetical protein Bcep1808_2116 [Burkholderia vietnamiensis G4]
          Length = 663

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 23/138 (16%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP  +      +L          +P +   + +P+CG G F+   ++   +  
Sbjct: 20  KRRGVVYTPVALAQSMCEML----------APSLAERVLEPSCGRGVFVFALLHWQRERH 69

Query: 232 S----HHKIPPILVPHGQELEPETHAVCVAGM----LIRRLESDPRRDLSKNIQQGSTLS 283
                             +L+P    + +A +     I       R D S N++ G  L 
Sbjct: 70  GLTWEQAARWAERRLFAGDLDP----LALADLAELWAIHFRRHGVRSDFSANLRAGDALF 125

Query: 284 KDLFTGKRFHYCLSNPPF 301
           +  +  +RF   L NPP+
Sbjct: 126 E-GYGDERFDAVLGNPPY 142


>gi|223932202|ref|ZP_03624206.1| SNF2-related protein [Streptococcus suis 89/1591]
 gi|223899183|gb|EEF65540.1| SNF2-related protein [Streptococcus suis 89/1591]
          Length = 2274

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 108/389 (27%), Gaps = 72/389 (18%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
            E+  +     + +E+  ++    FY      ++       R+ +E+ IA+       + 
Sbjct: 564 LEETDSQIPEEVVVETIPEIPVTDFYFPE--DMTDFYPKTARDKVETNIAAI-----RLV 616

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI-----RRFGSEV 170
           ++ +     A   +  LL K    + G+        +   S   E L      + +    
Sbjct: 617 KNLEVEHRNASSSEQELLAKYVG-WGGLANDFFDDYNPKFSKEREELKSLVTDKEYSDMK 675

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                 + T   ++               +        + DP+ GTG F      H+ + 
Sbjct: 676 QSSLTAYYTAPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAMPKHLREK 727

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                       +G EL+  T A+                +    I+   T+    F   
Sbjct: 728 SE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV---AFNDN 765

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   +SN PF              +      R+        D   +   +   K     
Sbjct: 766 SFDLVISNVPFA-------------NIRIADNRY--------DRPYMIHDYFIKKSLDLV 804

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYL 407
           + GG+ AI+        G        I + + E       V LP   F     T++ T +
Sbjct: 805 HDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAGTSVTTDM 859

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRN 436
                   +E        + +  +     
Sbjct: 860 LFFQKHLNKEYVADDLAFSGSIRYEKDSR 888


>gi|329954690|ref|ZP_08295750.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT
           12056]
 gi|328527231|gb|EGF54235.1| hypothetical protein HMPREF9445_00584 [Bacteroides clarus YIT
           12056]
          Length = 500

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/428 (14%), Positives = 114/428 (26%), Gaps = 88/428 (20%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   +G   + T  ++       L  P              + DP CGTG F+  A N  
Sbjct: 54  ASYKKGKGIYYTDMELSSRIIKFLEIPC----------GAYILDPCCGTGNFIVSARNSG 103

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL- 286
            +             +G +++    A+C             R+   KNI    TL+ +  
Sbjct: 104 HEN-----------VYGSDIDANAIALCQ------------RKSGIKNITVLDTLANNGK 140

Query: 287 ------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                        Y + NPP+          + K+       R      K S GS LF+ 
Sbjct: 141 DILRELHLKSPVDYVIGNPPYV--------PINKDITIDTPDRLFLKSVKES-GSNLFIA 191

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
            +    EL    G   + ++  + L      +  S++R+ +L    I +I+ +    F  
Sbjct: 192 AIYRAFELACPDG-VISYIIPKNFLH----VASYSKLRKLILSEKTILSIIDIGV-YFKS 245

Query: 401 TNIATYLWILSNRKTEERR-----------------------GKVQLINATDLWTSIRNE 437
                 +  L N                               ++ L      +   +  
Sbjct: 246 VRGEQIIITLKNSHVPNHNIRIYGYGNNEFIKRLEVPQSFYDNEILLFENETDFRIYKRL 305

Query: 438 GKKRRIINDDQRRQILDIYVSRENGKFSRML---DYRTFGYRRIKVLRPLRMSFILDKTG 494
               + + D     I   YV R   KF   +   D R F  +   V +     FI +   
Sbjct: 306 ESSYKKLGD-----ICTGYVGRGKSKFPSAVTGKDIRKFSLKNAPVPQKGNRVFIQNIYS 360

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQ--IYPYGWAESFVKESIKSNEAKTLKVKA 552
                       L        +      M +  +                     L +  
Sbjct: 361 AEAGIIASLAGNLEASETVTVITDRDENMCRYILGILHSRLCNYFLLKFCYNNSKLTMHT 420

Query: 553 SKSFIVAF 560
              ++   
Sbjct: 421 DAKYLKKL 428


>gi|268322724|emb|CAX37459.1| Pseudogene of Type I restriction enzyme mprotein (C-terminal part)
           [Mycoplasma hominis ATCC 23114]
          Length = 125

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
           +FF T+I+T + +L   K       +  I+A+  +    N       +       I+D Y
Sbjct: 1   MFFGTSISTCIMVLKKSK---IDNNILFIDASQEFLKATN----NNKLTSQNINNIIDYY 53

Query: 457 VSRENGKFSRMLDYRT 472
             R++  +   L    
Sbjct: 54  GQRKDISYISKLASVE 69


>gi|168700018|ref|ZP_02732295.1| Type I restriction-modification system methyltransferase subunit
           [Gemmata obscuriglobus UQM 2246]
          Length = 876

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 83/278 (29%), Gaps = 54/278 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           +S +YE L   +    ++      TPR++       +L+    +          + DP C
Sbjct: 159 LSQVYEALCWEWTPREAKKTSQRYTPRNIAVTLLNEMLEGITNI------EACRILDPAC 212

Query: 215 GTGGFLTDAMN--HVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIR 262
           G G FL  +    ++    +                     G ++      +    + + 
Sbjct: 213 GAGVFLVLSFRRLYLERWRAAADKKRPDTAVIREILEKQLVGLDISEAALKLAALSLYLT 272

Query: 263 RLESDPRRDLSKNIQQ------------GSTLSKDLFT------------GKRFHYCLSN 298
            +E DP       ++                +S D                 +F   +SN
Sbjct: 273 AVELDPEPQPPDKLKFKNLRGRVLHNVREDGVSTDSQALGSLGAHVGKNFDGKFDIVVSN 332

Query: 299 PPFGKKWEKDKDAVEKEHKN-----GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+    +     +   +++     G+       LP  ++  + FL+      +     G
Sbjct: 333 PPWTSLDKNMGKRLAGAYESIIKRVGDDNSVEVVLPD-NNPDLPFLLRSIEWCKP----G 387

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           GR  + L +  L         +  R  +     ++ I+
Sbjct: 388 GRIGMALPARLLLKSAKN--PAAARAMIFRLLRVDGII 423


>gi|260428543|ref|ZP_05782522.1| N-6 DNA Methylase family protein [Citreicella sp. SE45]
 gi|260423035|gb|EEX16286.1| N-6 DNA Methylase family protein [Citreicella sp. SE45]
          Length = 575

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 29/179 (16%)

Query: 255 CVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
             + M++  L   D +  ++ +I  G   ++   +       L  PPFG   + D    +
Sbjct: 144 SQSSMMVHILTILDLQGMVTLDIDWGW--NRPGVSETDVEVML--PPFGVTGKDDHTIPQ 199

Query: 314 KEH-----KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +       + G++GR       I+D                    GR  +  +   +F  
Sbjct: 200 RTLASLGLERGKIGRLLSETLAIADA--------------TEMTRGRVILSTTPGSMFR- 244

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLIN 426
                E+  R  LL +D +EAI+ +P+  +F  T I T L  LS   T  +R  V+ ++
Sbjct: 245 -MVGSETVARENLLRSDRLEAIMGVPSGMMFTNTAIPTLLVTLSP--TAGKRNTVRFVD 300


>gi|256842520|ref|ZP_05548022.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298374900|ref|ZP_06984857.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|301308009|ref|ZP_07213963.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|256735876|gb|EEU49208.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267400|gb|EFI09056.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|300833479|gb|EFK64095.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 1000

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 48/214 (22%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP ++      +L           P     + D  CG G F    
Sbjct: 60  EYAEAKKEFEMGQFFTPHEICRDMVDML----------CPVSSEMVLDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                     + +P     +G +++ +  +V                    +I++     
Sbjct: 107 ----------NHLPNPHNAYGFDIDGKAVSVAR------------YLYPEAHIEKCD--I 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  +  +RF   + NPPF  K+   K + E             G+        L ++   
Sbjct: 143 RQYYPEQRFDVIIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPAGI--------LMVIVPC 193

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
           + ++       R A + +    F G+   G S  
Sbjct: 194 SFMQSGFWEKTRIAGI-NGRFSFVGQTKLGPSAF 226


>gi|16803622|ref|NP_465107.1| hypothetical protein lmo1582 [Listeria monocytogenes EGD-e]
 gi|224501478|ref|ZP_03669785.1| hypothetical protein LmonFR_03007 [Listeria monocytogenes FSL
           R2-561]
 gi|254828183|ref|ZP_05232870.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898251|ref|ZP_05258175.1| hypothetical protein LmonJ_00510 [Listeria monocytogenes J0161]
 gi|254912256|ref|ZP_05262268.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936583|ref|ZP_05268280.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|255027153|ref|ZP_05299139.1| hypothetical protein LmonocytFSL_13938 [Listeria monocytogenes FSL
           J2-003]
 gi|255029398|ref|ZP_05301349.1| hypothetical protein LmonL_10333 [Listeria monocytogenes LO28]
 gi|284801973|ref|YP_003413838.1| hypothetical protein LM5578_1728 [Listeria monocytogenes 08-5578]
 gi|284995115|ref|YP_003416883.1| hypothetical protein LM5923_1680 [Listeria monocytogenes 08-5923]
 gi|16411011|emb|CAC99660.1| lmo1582 [Listeria monocytogenes EGD-e]
 gi|258600570|gb|EEW13895.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609179|gb|EEW21787.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057535|gb|ADB68476.1| hypothetical protein LM5578_1728 [Listeria monocytogenes 08-5578]
 gi|284060582|gb|ADB71521.1| hypothetical protein LM5923_1680 [Listeria monocytogenes 08-5923]
 gi|293590233|gb|EFF98567.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 332

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 114/350 (32%), Gaps = 55/350 (15%)

Query: 88  LSTLGSTNT--RNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
              L +T    +N LE SY+ +  +  + +F+          L     L K+ +++  IE
Sbjct: 10  FQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIE 66

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L   +  +     +   L++  G +        MTP  +  +   LL             
Sbjct: 67  LENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIQKK 117

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              ++ DP CGT   LT  +N +       K    +   G +++    ++      +   
Sbjct: 118 KNISILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----LVGA 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +   ++           L +D             +S+ P G  +  D++A   E    E 
Sbjct: 168 DLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEG 218

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F            LF+       +     GG    ++  +          +    +++
Sbjct: 219 HSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFI 261

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430
            +N  IE I+ LP  LF        + IL       +   +V L N + L
Sbjct: 262 KKNGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311


>gi|254831983|ref|ZP_05236638.1| hypothetical protein Lmon1_11540 [Listeria monocytogenes 10403S]
          Length = 332

 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 114/350 (32%), Gaps = 55/350 (15%)

Query: 88  LSTLGSTNT--RNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
              L +T    +N LE SY+ +  +  + +F+          L     L K+ +++  IE
Sbjct: 10  FQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIE 66

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L   +  +     +   L++  G +        MTP  +  +   LL             
Sbjct: 67  LENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIQKK 117

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              ++ DP CGT   LT  +N +       K    +   G +++    ++      +   
Sbjct: 118 KNISILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----LVGA 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +   ++           L +D             +S+ P G  +  D++A   E    E 
Sbjct: 168 DLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEG 218

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F            LF+       +     GG    ++  +          +    +++
Sbjct: 219 HSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAIFGTSDFAKVD----KFI 261

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430
            +N  IE I+ LP  LF        + IL       +   +V L N + L
Sbjct: 262 KKNGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311


>gi|315608513|ref|ZP_07883500.1| DNA methylase [Prevotella buccae ATCC 33574]
 gi|315249839|gb|EFU29841.1| DNA methylase [Prevotella buccae ATCC 33574]
          Length = 2077

 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/391 (13%), Positives = 110/391 (28%), Gaps = 51/391 (13%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G    +          +   
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFARQAGIVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + +R    +   +L                  ++    SN PFG     D  
Sbjct: 166 MHPYGKGNIFVRNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSRGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ LF     T + + L +L  +  +     +  Q I
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGLFSENAGTEVGSDLIVLQKQSGKIISEGIEQQFI 315

Query: 426 NA-TDLWTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
            + +       +   K   + D + + I    I   R  G+         + +       
Sbjct: 316 ESVSAPIAEGSSVVFKHNSLFDGEWKDIAHRTIATERTMGRDPYGKPAWEYHFDGSIEDL 375

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ--------QIYPYGWAES 534
              +   L      R +  +    +    +    +  K + +           P    E+
Sbjct: 376 AESIRTQLSLEVEQRFDRKLYETGIPMTEEERQKEAEKQLQKLGITVDLPNEEPKTDKEA 435

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
               ++  +  +    K   +      +   
Sbjct: 436 DNAYNLMPDSIRKQLPKLYSTEKKLIGDKVA 466


>gi|159029754|emb|CAO87832.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 719

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 83/291 (28%), Gaps = 70/291 (24%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATA---------------------LLLDPDDA 197
           YE  +  + S++ E    + TP  VV                          L +   + 
Sbjct: 307 YETFLAEYDSKMRESRGVYYTPEPVVSYMVRSVDYILKNKFQIPKGLTDAKKLTIKNPND 366

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEP 249
             +        + DP  GTG FL   ++H+ D     K           +    G EL  
Sbjct: 367 SQETQEVHQVLILDPAVGTGTFLHSVIDHIYDSFRQQKGMWSSYVSKHLLPRLFGFELLM 426

Query: 250 ETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTLSK-------DLFTGK---------- 290
             + V      + ++ L  D   D    I   +TL +       D F  +          
Sbjct: 427 APYTVAHMKLGLQLQELGYDFSADERLGIYLTNTLQEAFQIPPADGFLNRIRDEAESAQG 486

Query: 291 -----RFHYCLSNPPFGKKWEKDKDAVEKEHKNGE-------LGRFGPGLPKISDGSMLF 338
                     + NPP+        + +++  K  +          F      + + +  +
Sbjct: 487 VKQEHPVMVIIGNPPYSGHSVNTGEWIKELLKGKDIISGEKTASYFEVDEQPLGEKNPKW 546

Query: 339 LMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           L     K        +   G G  A V +   L N         +R+ LL+
Sbjct: 547 LNDDYVKFIRFSQWRIEKTGYGILAFVTNHGYLDNPTFRG----MRQSLLK 593


>gi|308271231|emb|CBX27840.1| hypothetical protein N47_C18980 [uncultured Desulfobacterium sp.]
          Length = 252

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 85/279 (30%), Gaps = 45/279 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I+       +    F TP  V  L    +L+ +            T+ DP  G G     
Sbjct: 7   IKDTPISHRKDYGQFFTPSSVARLMVQWVLNDN----------PTTVLDPAFGLG---IF 53

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +    S            + +      +  + + I   +       S         
Sbjct: 54  YDEVLKTKPSQQLQFIGYEIDKKIIGYLNSELNKSNLKINNCDYLEANAGS--------- 104

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                    F   + NPP+ +     K          ++G+   G    S+ S +FL+  
Sbjct: 105 ---------FDGIICNPPYMRFQNFLKRHSVLPKIEKQIGKRLVGY---SNISSVFLLKA 152

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400
            N+L    N  G  A ++       G       E++R LL+N L++ I+      ++F  
Sbjct: 153 LNEL----NDNGNLAFIMPFEFFNTGYG----KEVKRSLLKNHLLKQIIIFSNEKEIFPD 204

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
                 + +      E+   K+  I A D  + + N   
Sbjct: 205 ATTTVCVLLCKKDGKEDDI-KITQIKAEDEISQLSNISS 242


>gi|225869333|ref|YP_002745281.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702609|emb|CAX00640.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2281

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 76/302 (25%), Gaps = 60/302 (19%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 670 KEYSDMKQSSLTAYYTDPHLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 721

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ +             +G EL+  T A+                  + +I+      
Sbjct: 722 PKHLRENSE---------LYGVELDTITGAIAK------------HLHPNSHIEV-KGFE 759

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   LSN PF      D                        D   +   +  
Sbjct: 760 TIAFNDNSFDLVLSNVPFANIRIADSHY---------------------DKPYMIHDYFV 798

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+        G        I + + E       V LP   F     
Sbjct: 799 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQNIRETTDFLGGVRLPDSAFKAIAG 853

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T++ T +        +  +      + +  +             ++D   Q+L  Y  R 
Sbjct: 854 TSVTTDMLFFQKHMDKGYQADDLAFSGSIRYDKDDRIWLNP-YFDEDYNSQVLGTYEVRN 912

Query: 461 NG 462
             
Sbjct: 913 FN 914


>gi|296445757|ref|ZP_06887710.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gi|296256737|gb|EFH03811.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 608

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 84/313 (26%), Gaps = 77/313 (24%)

Query: 172 EGAEDFMTPRDVVHLATA----LLLDPDDALFKESPG---------------MIRTLYDP 212
           +      TP  +          + LD        +                    ++ DP
Sbjct: 15  KRQGIVYTPEPIARFLAERTIAVSLDEMSDALAAAHRGRETAAFWREWLAALRSFSIVDP 74

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  L  A   +A            +    +L+P   A+      +  ++ DP    
Sbjct: 75  GCGEGALLLAAAQEMARRYRDAAEHLRKLGVDVDLDPAREAIS---HNLFGVDIDPLAAA 131

Query: 273 -------------------SKNIQQGSTLSKD--------------LFTGKRFHYCLSNP 299
                               + I+ G +L  D                  + F   + NP
Sbjct: 132 RARRALARLAPSPEAALRLEETIRAGDSLVDDPSASAGAFDWRAAFPQAARGFDIVIGNP 191

Query: 300 PF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+   ++ K       +       R+     +    +  F      K       GGR   
Sbjct: 192 PYVRMEYLKPLKPWLAQ-------RYHVAAERADLYAYFF-----EKGLSLLREGGRLGY 239

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNIATYLWILSNRKT 415
           + SSS  F   AG   + +R  L  +  +E +V    LP  +F        +  L     
Sbjct: 240 I-SSSTFFRTGAG---ARLRGLLARSGAVECVVDFGDLP--VFDDVVAYPAIVTLRKGAA 293

Query: 416 EERRGKVQLINAT 428
            +       ++A 
Sbjct: 294 TQGDLSFLRLDAA 306


>gi|166364659|ref|YP_001656932.1| N-6 DNA methylase [Microcystis aeruginosa NIES-843]
 gi|166087032|dbj|BAG01740.1| N-6 DNA methylase [Microcystis aeruginosa NIES-843]
          Length = 429

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 45/264 (17%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +    F TP  V  L           + K++P    T+ DP  G G         + 
Sbjct: 16  NHRKDYGQFFTPVCVARLMVQ-------WVLKDNP---ETVLDPAFGLG---VFYDEAIK 62

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
               +      +   G E++           L R  +S   R ++ +  +  T       
Sbjct: 63  TPSGNQ-----VHFIGYEIDRNIF-----EFLNRNGDSPYLRVINSDYLEAET------- 105

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            ++F   + NPP+ +  +  K          ++G+   G    S+ S LFL+    +L+ 
Sbjct: 106 -EKFDGIICNPPYMRFQKFLKRHDILPKIEEKIGKKLIGY---SNISSLFLVKSLRELK- 160

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATY 406
                G  A ++       G       EI++ LLEN L++ I+      ++F        
Sbjct: 161 ---INGNLAYIMPFEFFNTGYG----KEIKKSLLENHLLKQIIIFDNEKEIFPEATTTVC 213

Query: 407 LWILSNRKTEERRGKVQLINATDL 430
           + +  N   +E   K+  I  +D 
Sbjct: 214 VLLCKNDGKKETI-KILQIKKSDE 236


>gi|110803859|ref|YP_699839.1| hypothetical protein CPR_2592 [Clostridium perfringens SM101]
 gi|110684360|gb|ABG87730.1| N-6 DNA methylase [Clostridium perfringens SM101]
          Length = 494

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 55/287 (19%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  V       ++D          G  +TL+DP CG           + D  
Sbjct: 23  REIGYYSTPPFVARYIGKRIID--------INGKGKTLFDPCCG--------KEELTDYF 66

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           S   I  I                   ++  +            I    +          
Sbjct: 67  SDLGIKTIG----------------MDLIKYKNNYKCEFKKDNFINYYCSQKNTKTWD-- 108

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           + Y ++NPP+           ++  KN        GL    +   +F+  + +K +    
Sbjct: 109 YDYYIANPPYNCHEVNFIKENKERLKNYFNE---VGL---HNMYSMFMFAIIDKAK---- 158

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN--IATYLWI 409
            G    ++ + S  F  +       +R  +L    I  I   P  LF      + T + I
Sbjct: 159 NGALIGLITNDSF-FTAKNH---KRLRNKILRECSIYEITMCPRGLFHNQGADVRTSILI 214

Query: 410 LSNRKTEERRGKVQLIN---ATDLWTSIRNEGKKRRIINDDQRRQIL 453
           L   K  E + K+ + N   + + +  + N  K          ++I+
Sbjct: 215 LRKGK--EYQEKIVVNNRPKSIEEFKGLLNGIKNNSNERPYSLQEIV 259


>gi|238022625|ref|ZP_04603051.1| hypothetical protein GCWU000324_02534 [Kingella oralis ATCC 51147]
 gi|237865828|gb|EEP66964.1| hypothetical protein GCWU000324_02534 [Kingella oralis ATCC 51147]
          Length = 939

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 87/302 (28%), Gaps = 64/302 (21%)

Query: 68  DLESFVKVAG--YSFYNTSEYSLSTLGSTNTR--NNLESYIASFSDNAKAIFEDFD---- 119
           D       AG  + +   S      LGS  +R    L + I S   N       F     
Sbjct: 196 DDTLIFNEAGMVHRWLAASREDGDDLGSRISRLFETLSTPIPSRQKNLNEDLAQFGYVNG 255

Query: 120 --FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA--- 174
             F+  IA  E  G L  +    S ++     +   +  ++++ ++       S      
Sbjct: 256 GLFAERIALPEFDGKLRHLLLACSAMDW--SEISPAIFGSMFQGILEENDPNSSRKKSRS 313

Query: 175 --EDFMTP-RDVVHLATALLLDPDDALFKESPG-----------MIRTLYDPTCGTGGFL 220
                 T  ++++     L +D   +  K +                  +DP CG G FL
Sbjct: 314 ELGAHYTSEKNILKAINTLFMDELRSSLKSATSRAAQFALHEKIAALHFFDPACGCGNFL 373

Query: 221 TDAMNHVADCGSH-------------------HKIPPILVPHGQELEPETHAVCVAGMLI 261
             A   +                         ++   I    G E+E     +    + I
Sbjct: 374 VIAYRELRRLEMDLIAKLYKTNLRDTLGAIATYQKVSINQFFGIEIEEHACEIAKTALYI 433

Query: 262 RRLESDPRR-------------DLSKNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKW 305
              + +                    +I   + L+ D       +  HY + NPPF  K 
Sbjct: 434 TDHQMNREAESRFGKARPTIPLHDIPHITCANALTTDWATVLPPQDCHYIIGNPPFVGKN 493

Query: 306 EK 307
           ++
Sbjct: 494 KQ 495


>gi|187928678|ref|YP_001899165.1| hypothetical protein Rpic_1595 [Ralstonia pickettii 12J]
 gi|241114233|ref|YP_002973708.1| hypothetical protein Rpic12D_5237 [Ralstonia pickettii 12D]
 gi|187725568|gb|ACD26733.1| conserved hypothetical protein [Ralstonia pickettii 12J]
 gi|240868806|gb|ACS66464.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 310

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 17/130 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ + Y  L        ++ A  F TP  V  +  A+ ++  D     +     T+ +P
Sbjct: 113 DVLGHTYMLL-----ELGNDRAGQFFTPYSVSSMMAAMQVNDHDP--DVAEHGFITVMEP 165

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG GG +      +    + H     +     +++P    +    + +  + +      
Sbjct: 166 TCGAGGMVIAMAEAM--HQAGHNYQTAMHATCIDIDPRCVHMTYVQLALLHIPAV----- 218

Query: 273 SKNIQQGSTL 282
              +  G++L
Sbjct: 219 ---VILGNSL 225


>gi|92109757|ref|YP_572043.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
 gi|91802839|gb|ABE65211.1| N-6 DNA methylase [Nitrobacter hamburgensis X14]
          Length = 1700

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 70/273 (25%), Gaps = 60/273 (21%)

Query: 154 VMSNIYEHLIRRF--GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            +    E  +      S          TP  ++               +        + +
Sbjct: 144 EIGEDLEDAVGDLDHASLARCTQYAHFTPEFIIRAIWR--------GLQRLGWRGGRVLE 195

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P  GTG F       +                G EL+P T  +                 
Sbjct: 196 PGIGTGLFPALMPEGLR---------KTSHVTGIELDPVTARIA------------GLLQ 234

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
               I +G   ++       F   + NPPF  +  +   A                    
Sbjct: 235 PRARIIRGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSRGLRLHDY--------- 283

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                 F+    + L+     G  AA V S     +G     +S  R  + ++  + A +
Sbjct: 284 ------FIARAIDLLKP----GALAAFVTS-----SGTMDKADSSAREHIAKSADLIAAI 328

Query: 392 ALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
            LP   F     T++   L     RK  E  G 
Sbjct: 329 RLPEGSFRASAGTDVVVDLLFFRKRKIAEPEGD 361


>gi|319644564|ref|ZP_07998917.1| N-6 DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317384052|gb|EFV65038.1| N-6 DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 678

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 51/245 (20%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  VV      LL P+               DP+ GTG F++   +     
Sbjct: 16  NSVLTAFYTPEPVVTAMQEALLIPEI--------RPERFLDPSAGTGMFISTLKD----- 62

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                   +   H  E +  T  +  +             +   NI+   ++    +   
Sbjct: 63  --------VPEIHCFEKDRLTGRILSS----------LYPESKVNIEGFQSIQP--YYNG 102

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F    SN PFG     +    +++    +       L  + +       +   K     
Sbjct: 103 YFDVVSSNIPFG-----NTRIYDRDFDRSDDPVRKSSLAAVHN-------YFFFKGMDTL 150

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY--LW 408
             GG  A + +S  + + +       +R WL+ +  + + + LP +LF          L 
Sbjct: 151 REGGILAYITTSGVMDSPQNRP----VRDWLVNHANLVSTIRLPDNLFTDAGTEVGSDLI 206

Query: 409 ILSNR 413
           +L   
Sbjct: 207 VLQKN 211


>gi|254384443|ref|ZP_04999784.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194343329|gb|EDX24295.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 1384

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 60/230 (26%), Gaps = 64/230 (27%)

Query: 151 PDRVMSNIYEHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
               +  IYE L+                       +    + TP  +V +     LDP 
Sbjct: 427 DAEELGVIYESLLELVPQYSATEQTFELVNRAGNERKKTGSYYTPSSLVEVLLDSTLDPV 486

Query: 196 DALFKESPGMIR-------------------TLYDPTCGTGGFLTDAMNHV-------AD 229
               ++                         T+ DP CG+G FL  A   +        D
Sbjct: 487 IDEAQKRGEAAAAEAGQIDAREAVERELLSLTVCDPACGSGHFLVAAARRIAKRVAAVRD 546

Query: 230 CGSHHKIPPILV---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQG 279
                    I            +G +L P    +    + +  LE       L  +I+ G
Sbjct: 547 RTPEPTPESIRHALHDVIAKCVYGVDLNPMAVELAKVSLWMEALEPGKALGFLDAHIKHG 606

Query: 280 S-------TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           +        L +     + F       P     +      ++E+K    G
Sbjct: 607 NGLIGATPKLMRGGIPDEAFK------PVEGDDKSVATRWQRENKEQHQG 650


>gi|317181982|dbj|BAJ59766.1| Type IIG restriction-modification enzyme [Helicobacter pylori F57]
          Length = 1033

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 79/578 (13%), Positives = 159/578 (27%), Gaps = 73/578 (12%)

Query: 43  RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           RL+   E          +       SNI  +  + +       TS      +      +N
Sbjct: 177 RLKDIFEKNPEIFHGFLDSLRGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 230

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +++ I+   D                 L+    LY+  K    +          ++ N+Y
Sbjct: 231 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 286

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218
               +    + SE      TP +VV                 +      T++DP  GTG 
Sbjct: 287 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 346

Query: 219 FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           F+   ++   +  S    K   +      ++    + + +  +       D      KNI
Sbjct: 347 FIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQNRDGSLKNFKNI 406

Query: 277 QQGSTL----------SKDLFTG-------------KRFHYCLSNPPF--GKKWEKDKDA 311
               +L            DLF               +     + NPP+  G K E D + 
Sbjct: 407 ALTDSLDFYEEKNDKGVFDLFKDLEENKEIKSTIEKQNIRVIIGNPPYSAGSKSENDNNQ 466

Query: 312 VEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                K  +      G     K+   +   L+             G    V++   +   
Sbjct: 467 NLSHPKLEKRVYEKYGKNSTAKVGATTRDTLIQSIYMASELLKDKGVLGFVVNGGFI--- 523

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTD--------------LFFRTNIATYLWILSNRK 414
            + SG+   R+ + ++     ++ L  +              +F   + AT   I   + 
Sbjct: 524 DSKSGDG-FRKCVAKDFAHLYVLNLRGNARTSGETFQKEGGKIFDSGSRATIAIIFFVKD 582

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
              + G +   +  D         +     N D        + +         ++ R   
Sbjct: 583 ASVKNGAIHYYDIGDYLKREEKLNRLSNFTNLDAIP-----FETITPNAKGDWINQRDDA 637

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           + ++    PL+         +  + ++       P   +F  D L   +Q+      A+ 
Sbjct: 638 FDKLI---PLKRDTKRQNPSVFDINSNGVVSGRDPWVYNFSPDALMLSVQKCIDTYNADL 694

Query: 535 FVKESIKSNEAK--TLKVKASKSFIVAFINAFGRKDPR 570
               +      K     VK S        +     D  
Sbjct: 695 KRFNAHFREAFKQRAHGVK-SSELYKQLNDKEITTDKT 731


>gi|308271470|emb|CBX28078.1| hypothetical protein N47_G34020 [uncultured Desulfobacterium sp.]
          Length = 537

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 85/279 (30%), Gaps = 45/279 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I+       +    F TP  V  L    +L+ +            T+ DP  G G     
Sbjct: 7   IKDTPISHRKDYGQFFTPSSVARLMVQWVLNDN----------PTTVLDPAFGLG---IF 53

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +    S            + +      +  + + I   +       S         
Sbjct: 54  YDEVLKTKPSQQLQFIGYEIDKKIIGYLNSELNKSNLKINNCDYLEANAGS--------- 104

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                    F   + NPP+ +     K          ++G+   G    S+ S +FL+  
Sbjct: 105 ---------FDGIICNPPYMRFQNFLKRHSVLPKIEKQIGKRLVGY---SNISSVFLLKA 152

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400
            N+L    N  G  A ++       G       E++R LL+N L++ I+      ++F  
Sbjct: 153 LNEL----NDNGNLAFIMPFEFFNTGYG----KEVKRSLLKNHLLKQIIIFSNEKEIFPD 204

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
                 + +      E+   K+  I A D  + + N   
Sbjct: 205 ATTTVCVLLCKKDGKEDDI-KITQIKAEDEISQLSNISS 242


>gi|332971857|gb|EGK10803.1| methylase [Kingella kingae ATCC 23330]
          Length = 923

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 74/273 (27%), Gaps = 59/273 (21%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNFSGIELH 146
             TL +      L  Y+  F            F+ T+  +   + +  K+      I   
Sbjct: 228 FQTLNTAKRSPKLPEYLQEF-----DYINGGLFAETLPTIYFDSEMRQKLIHIGREINWG 282

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGM 205
              +   +  ++++  +               T +D +      L   D  A   +   +
Sbjct: 283 --FISPEIFGSLFQEALD---VNERRELGAHYTEKDNIEKVINSLFLDDLKAELAQISSL 337

Query: 206 IR----------------TLYDPTCGTGGFLTDAMNHVADCG----SHHKIPPILV---- 241
            R                   DP CGTG FL  A   + +        ++          
Sbjct: 338 KRDKKKRLIEFQQKIAKLKFLDPACGTGNFLVAAYRALRELEIQVIHEYQKLDKTHLQSA 397

Query: 242 -----PHGQELEPETHAVCVAGMLIRRLESDPRRDLS---------------KNIQQGST 281
                  G E++     + V  M +     +     +                +I  G++
Sbjct: 398 VSIEQFFGIEIDGLAAEIAVLSMWLIDHLCNLHEGAALGKGYGSLNIPLRKLAHITHGNS 457

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           L  D    +   + L NPPF     + K+    
Sbjct: 458 LRLDW---ENVDFILGNPPFIGSTYQTKEQKAD 487


>gi|328957178|ref|YP_004374564.1| putative nucleic acid methyltransferase [Carnobacterium sp. 17-4]
 gi|328673502|gb|AEB29548.1| putative nucleic acid methyltransferase [Carnobacterium sp. 17-4]
          Length = 335

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 102/337 (30%), Gaps = 42/337 (12%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            SY+ + S+  + I  +      +  L     + K+ K +   E+  D++    +    +
Sbjct: 26  ISYLEALSETGENILAN-RIPHQVDGLPSDETVGKLMKLY--KEVSIDSMEPEDIRKAIQ 82

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             + +     +      MTP  +  +   L+                 L DP  G G  L
Sbjct: 83  LALLKASKTDALQPNHQMTPDAIGFILNYLI-----EKLISGKEQAIRLLDPAVGMGNLL 137

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +   N +       +        G + +     +      ++R         +       
Sbjct: 138 STVYNGLVSKDILVEAE------GIDNDDLLLTLASVNTTLQRQNVTLTHQDA----LQD 187

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            L             +S+ P G     +K +  K                 S    LF+ 
Sbjct: 188 LLMDP------VDVVVSDLPVGYYPLDEKASKYKTAAKEGH----------SYAHHLFIE 231

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              + L+      G   + L  + LF      G   + + + E   ++ ++ LP +LF  
Sbjct: 232 QSLHYLKD-----GGFGLFLVPAQLFETDEAPG---LLKMIQEEAFLQGMLNLPNELFKT 283

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
            N    + ++  + +  ++ K  L+     + + +  
Sbjct: 284 KNSRKSILLIQKKGSNAKQAKQVLLAQIPDFKNQKAM 320


>gi|119493853|ref|ZP_01624419.1| DNA modification methyltransferase-related protein [Lyngbya sp. PCC
           8106]
 gi|119452402|gb|EAW33592.1| DNA modification methyltransferase-related protein [Lyngbya sp. PCC
           8106]
          Length = 920

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 74/279 (26%), Gaps = 63/279 (22%)

Query: 148 DTVPDR---VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP-DDALFKESP 203
           D   +    +  NI+E  I     E         T    +       +    +     + 
Sbjct: 303 DNWSNIRPSIFGNIFESAID---PEKRHAHGIHFTSEVDIRQIVRPTISDYWEDRINAAN 359

Query: 204 GMI-----------RTLYDPTCGTGGFLTDAMNHVADCGS-----------------HHK 235
            +              + DP CG+G FL  A   +                         
Sbjct: 360 TIGELNTLQMELQGYRVLDPACGSGNFLYVAYQELKRIERLLMDKITARKRSESTVAAIS 419

Query: 236 IPPILVPHGQELEPETHAVCVAGML-----------IRRLESDPRRDLSKNIQQGSTLSK 284
               +   G +  P    +    M+           +    + P   L +NI     L  
Sbjct: 420 FVTPMQFFGMDTNPFAVQLARVTMMIARKIAIDKYQLTNEPALPLDTLDQNIVCQDALFS 479

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 + +  + NPPF    +  +  +  E+ +    +F      + D S+ F  +   
Sbjct: 480 RW---VKANAVIGNPPF-LGGKHMRMTLGDEYIDRVFNKFSD----VKD-SVDFCAYWFR 530

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                    GRA +V        G     + + R+  LE
Sbjct: 531 LAHDHIGETGRAGLV--------GTNSISQGKSRKAALE 561


>gi|319643753|ref|ZP_07998368.1| hypothetical protein HMPREF9011_03970 [Bacteroides sp. 3_1_40A]
 gi|317384641|gb|EFV65605.1| hypothetical protein HMPREF9011_03970 [Bacteroides sp. 3_1_40A]
          Length = 235

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ +++   +             F TP  V  L   +                +++ D 
Sbjct: 68  DVLGDMFMECVSH------GNNGQFFTPIHVADLMACMGG--------NRLKPKQSVCDS 113

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  A+   A+     ++      +G +++     + V  +++  +  +     
Sbjct: 114 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 169

Query: 273 SKNIQQGSTLSKD 285
           +  +Q   +   D
Sbjct: 170 TLTMQHWRSYHID 182


>gi|313667110|gb|ADR73003.1| RM.BspCNI [Bacillus sp. 1310(2010)]
          Length = 918

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 114/351 (32%), Gaps = 50/351 (14%)

Query: 111 AKAIFEDFDFSSTIA-----RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
              I E  DF +        R      L K+  NF+   ++ D         + E L+  
Sbjct: 273 LNEISEKCDFYNIFEEKPGERYIDVATL-KVLTNFNDYIMNLDFNSYSD--RLLEELLNI 329

Query: 166 FGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             +    + A  F TP+++  + T+L +    +             DP CGTG  +  A 
Sbjct: 330 VVTRSKRKVAGQFSTPKELAMILTSLTMTDKSSRIS----------DPCCGTGTIVKAAY 379

Query: 225 NHVADCGSHHKIPPILVPHGQEL----EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           +     G         +  G +     +    A+     L +++        + N     
Sbjct: 380 DLKLVSGIDSSDAIDQIWAGDKFRYPLQFAMLALSSPENLGKQINIYKDDVFNLNASHKV 439

Query: 281 TLSKDLFTGK------RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
            L   +           F   +SN PF ++    +        N E  RF   L +  +G
Sbjct: 440 ELHSPISKETYEVDLGEFDTVVSNLPFVQQETLAE-------LNPEAIRFIEELNEAFNG 492

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN--GRAGSGESEIR---RWLLENDLIEA 389
                 ++A K++      G A +++S+S L    G     E + R   +++L +     
Sbjct: 493 RSDLYAYIALKIDEILPEKGTAGLIVSNSWLGTEFGERFFDELKKRYHIKYILTSGK--- 549

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
                   F   ++ T + +L          KV  I        I  EG+K
Sbjct: 550 -----GRWFQNADVVTNIIVLEKG-NTSPDKKVNFITLKKTLQEIVVEGEK 594


>gi|294508850|ref|YP_003572909.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
 gi|294345179|emb|CBH25957.1| Conserved hypothetical protein containing RNA methylase domain
           [Salinibacter ruber M8]
          Length = 369

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 21/146 (14%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
             +S    +   PR  +    A  L               TL DP CG+G  L +A +  
Sbjct: 181 EALSRRQLEGYQPRAALKANVAYALL----RLAHLDAPPNTLLDPFCGSGTILLEAAD-- 234

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL- 286
                   +      +G +   E  +     + +  L           I++G     D  
Sbjct: 235 --------LWADTQCYGSDWNEEAVSGARTNVDLAGLSDRIA------IRKGDVWHLDET 280

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV 312
           F        ++NPPFG +     D  
Sbjct: 281 FADVTADLIVTNPPFGVRMASSMDFY 306


>gi|189460986|ref|ZP_03009771.1| hypothetical protein BACCOP_01633 [Bacteroides coprocola DSM 17136]
 gi|198277732|ref|ZP_03210263.1| hypothetical protein BACPLE_03955 [Bacteroides plebeius DSM 17135]
 gi|265768072|ref|ZP_06095454.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|189432325|gb|EDV01310.1| hypothetical protein BACCOP_01633 [Bacteroides coprocola DSM 17136]
 gi|198269429|gb|EDY93699.1| hypothetical protein BACPLE_03955 [Bacteroides plebeius DSM 17135]
 gi|263252323|gb|EEZ23859.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 241

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ +++   +             F TP  V  L   +                +++ D 
Sbjct: 74  DVLGDMFMECVSH------GNNGQFFTPIHVADLMACMGG--------NRLKPKQSVCDS 119

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  A+   A+     ++      +G +++     + V  +++  +  +     
Sbjct: 120 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 175

Query: 273 SKNIQQGSTLSKD 285
           +  +Q   +   D
Sbjct: 176 TLTMQHWRSYHID 188


>gi|198274720|ref|ZP_03207252.1| hypothetical protein BACPLE_00879 [Bacteroides plebeius DSM 17135]
 gi|198272167|gb|EDY96436.1| hypothetical protein BACPLE_00879 [Bacteroides plebeius DSM 17135]
          Length = 1658

 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 71/265 (26%), Gaps = 36/265 (13%)

Query: 135  KICKNF-SGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            ++ + F   +  +   + +       + N+YE   +       E      TP + V    
Sbjct: 842  EVLEKFYQSVRTNVGGIDNLEGKQTIIKNLYEKFFKGAFPLTVEKLGIVYTPVECVDFII 901

Query: 189  ALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
              + D   A F  S       + DP  GTG F+T  +          +       H  E+
Sbjct: 902  RSVDDILKAEFNTSLTEQNVHILDPFTGTGTFITRLLQSGLIRPEDMERKYRNEIHCNEI 961

Query: 248  EPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGST--LSKDLFTG-------------- 289
                + +    +  +   +           I    T  L++                   
Sbjct: 962  VLLAYYIADVNIESVFHDITHRETYLPYSGICLTDTFQLAEKKHNELFTEFFQDNSKRVK 1021

Query: 290  ----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH---- 341
                      + NPP+    +   D  +         R        S  ++   ++    
Sbjct: 1022 KQMATHVRVIIGNPPYSIGQKSANDNAQNLSYPYLDKRVSETYAAKSSATLNKSLYDSYV 1081

Query: 342  ---LANKLELPPNGGGRAAIVLSSS 363
                     +P N GG  A + + +
Sbjct: 1082 KAFRWASDRIPQNEGGIVAFISNGA 1106


>gi|291544388|emb|CBL17497.1| DNA methylase [Ruminococcus sp. 18P13]
          Length = 1068

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 61/266 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S        F TP  V++    ++        K+       + +P+CG G F+   
Sbjct: 345 EEYASARESTLTAFYTPPTVINAVYKVM--------KQLGFREGNILEPSCGIGHFIGML 396

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + +             +G EL+  +  +              +     +I       
Sbjct: 397 PEEMKESK----------IYGVELDTISAGIAQ------------QLYQKSSIA-AQGFE 433

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +       F   + N PFG     DK   + +    +                 F     
Sbjct: 434 ETNLPDSFFDAVVGNVPFGDFKVPDKRYDKHKFLIHDY----------------FFAKSL 477

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
           +KL      GG   ++ S   +         S +R+++ +   +   + LP + F     
Sbjct: 478 DKLRP----GGVMVLITSKGTMDKEN-----SAVRKYIAQRADLLGAIRLPNNTFKGNAG 528

Query: 401 TNIATYLWILSNRKT--EERRGKVQL 424
           T + + + IL  R    +     VQL
Sbjct: 529 TEVVSDILILQKRDRIVDIEPDWVQL 554


>gi|302554850|ref|ZP_07307192.1| type II restriction enzyme [Streptomyces viridochromogenes DSM
           40736]
 gi|302472468|gb|EFL35561.1| type II restriction enzyme [Streptomyces viridochromogenes DSM
           40736]
          Length = 1383

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 82/324 (25%), Gaps = 74/324 (22%)

Query: 154 VMSNIYEHLIR---------RFGS------EVSEGAEDFMTPRDVVHLATALLLDP-DDA 197
            + ++YE L+          R            +    + TP  +        L+P  D 
Sbjct: 418 ELGSVYEALLELVPKHSVADRTFELVDRIGNDRKKTGSYYTPSALTETLLDSTLNPVIDD 477

Query: 198 LFKESPGMIR------------------TLYDPTCGTGGFLTDAMNHV-------ADCGS 232
             +                         T+ DP CG+G FL  A   +        +   
Sbjct: 478 AVRRGEQRANAEGRLSPTDTIVEELLSLTVCDPACGSGHFLVAAARRIAKRVAAVRERNP 537

Query: 233 HHKIPPILV---------PHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282
                 +            +G +L P    +    + +  +E   P   L  +I+ G+ L
Sbjct: 538 EPTAEAVRHALHEVVARCVYGVDLNPMAVELAKVSLWLEAMEPGKPLSFLDAHIKHGNGL 597

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR---FGPGLPKISDGSMLFL 339
                           P   +    +K     E  +    R         +   G +   
Sbjct: 598 ------------IGVTPALMRDGIPEKAFKTTEGDDDAWARQLLNRNTEERKGQGVLFEA 645

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
               N          R      +  L        E+  R W   +D + A + L      
Sbjct: 646 QTETNVANTSFARSLRHITASPADNL--TEVRRKEAAYRDWSTSDDYLHA-LHLAD---- 698

Query: 400 RTNIATYLWILSNRKTEERRGKVQ 423
               A ++W+     +     KV 
Sbjct: 699 -AWCAAFVWVKRKESSPAITHKVF 721


>gi|241888969|ref|ZP_04776273.1| N-6 DNA methylase [Gemella haemolysans ATCC 10379]
 gi|241864218|gb|EER68596.1| N-6 DNA methylase [Gemella haemolysans ATCC 10379]
          Length = 1018

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 97/328 (29%), Gaps = 94/328 (28%)

Query: 82  NTSEYSLSTLGSTNTRN-NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           N +++ L T+   N    N +  I  F+         F +   +  L    +++      
Sbjct: 288 NVTKHELFTMLCRNIDKGNKQKGINKFNGGL------FKYDEILDDLVLDDIIFTELITL 341

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED--------------FMTPRDVVHL 186
           +  + + D   +  +  I+E  I       ++                  F TP  +   
Sbjct: 342 ADYDFNTDVDENI-LGRIFEQSISDLEELKNDALGIETDKKKGKRKKDGVFYTPSRITRG 400

Query: 187 ATALLLDPDDALFKESPGMIR------------------------------------TLY 210
                +       K   G  +                                     + 
Sbjct: 401 IVEKSIGEYLNDKKLELGFEKLPELTDESIETQRGLSAKAEKHLTFWREYRSKVLNIKVI 460

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIP--------------------------PILVPHG 244
           DP CG+G FL  A +++                                     I   +G
Sbjct: 461 DPACGSGAFLIAAYDYLKKELDEINDRIADLKGRTQELFDGDEMYDASLENEYLIKCLYG 520

Query: 245 QELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKDLFTGKR--------FHYC 295
            +L PE+  +    + +R L +D P  +L  NI+ G+++++  F  +         F   
Sbjct: 521 VDLNPESVEISKLSLWLRTLTNDKPLTNLDDNIKSGNSITEFDFQEEFLEVFVKGGFDVV 580

Query: 296 LSNPPFGKKWE-KDKDAVEKEHKNGELG 322
           + NPP+ K+   KD   V +E     +G
Sbjct: 581 IGNPPYVKQERLKDVKHVLEEKYLTFMG 608


>gi|288801294|ref|ZP_06406748.1| adenine specific DNA methyltransferase [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288331677|gb|EFC70161.1| adenine specific DNA methyltransferase [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 537

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 31/211 (14%)

Query: 103 YIASFS-DNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           YI+  S +  K  +  +    +   +  K+   Y++    + I        D      YE
Sbjct: 45  YISKQSLEFVKDNLIGNSKLIARSNKSRKSTKSYEL-SKPTAITDLNSDCFDEESGQRYE 103

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           + +             + T ++++      +                T  DP CG G F+
Sbjct: 104 NSL---TESYRNKEGIYYTNKNIIADMLKHI----------KVTKQTTFLDPCCGCGNFI 150

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +A+          K   +   +G + +     +    + ++            NI    
Sbjct: 151 MEAIE---------KGVEVENIYGFDTDAIAVEITKQRVFLK------TGKQPINIICAD 195

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
            L+      K+F    +NPP+GKK  K+   
Sbjct: 196 FLTTAKSLNKKFDLIYTNPPWGKKLSKNHKE 226


>gi|154253048|ref|YP_001413872.1| methylase [Parvibaculum lavamentivorans DS-1]
 gi|154156998|gb|ABS64215.1| methylase [Parvibaculum lavamentivorans DS-1]
          Length = 928

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 63/228 (27%), Gaps = 55/228 (24%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           + +   +   +++ ++ +  +E       + T ++++ L   L LD     F  +  + R
Sbjct: 284 EAISPAIFGALFQSVMNK--TERRALGAHYTTEKNILKLIQPLFLDGLHEEFARAKALKR 341

Query: 208 ----------------TLYDPTCGTGGFLTDAMNHVADCGSHH----------------- 234
                           T +DP CG G FL  A   +                        
Sbjct: 342 GRQQALEALHEKLGQLTFFDPACGCGNFLVIAYRELRALEQEILRVLHDGKDQRIFDVAQ 401

Query: 235 -KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKN-----------IQQGS 280
                +   +G E+      +      M+   + +        N           I    
Sbjct: 402 LSKVNVDQFYGIEIGEFPARIAEVAMWMMDHIMNNRLGLSFGSNYARIPLRTSPHILHAD 461

Query: 281 TLSKDL---FTGKRFHYCLSNPPFGKK---WEKDKDAVEKEHKNGELG 322
            L  D       ++  Y   NPPF        + +  V    K G  G
Sbjct: 462 ALEADWAALLPPEKCSYVFGNPPFIGSKFQTAEQRRQVRDIAKLGGSG 509


>gi|257093734|ref|YP_003167375.1| putative type II DNA modification enzyme [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046258|gb|ACV35446.1| putative type II DNA modification enzyme [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1158

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 50/185 (27%)

Query: 149 TVPDRVMSNIYEHLI------------RRF------GSEVS--------EGAEDFMTPRD 182
            +    + ++YE L+            RRF        +          + +  + TP  
Sbjct: 416 DMDSEELGSVYESLLELVPELTLTASVRRFGFIGDAAEQAGGSTKGNARKLSGSYYTPDS 475

Query: 183 VVHLATALLLDP-DDALFKESPGMIR------TLYDPTCGTGGFLTDAMNHVAD------ 229
           +V       LDP        +P          ++ DP CG+G FL  A   +A+      
Sbjct: 476 LVQELIRSALDPVIAQTLAANPRQPVQALLELSVCDPACGSGHFLLAAARRLAEEVARLS 535

Query: 230 ----------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQ 278
                          +       +G +  P    +    + +     D P   L  +++ 
Sbjct: 536 ATEGNPLPADYRHALRDVVAHCIYGVDKNPLAIELARTALWLEAYTPDRPLTFLDHHLRC 595

Query: 279 GSTLS 283
           G  L 
Sbjct: 596 GDALL 600


>gi|157155468|ref|YP_001464366.1| hypothetical protein EcE24377A_3365 [Escherichia coli E24377A]
 gi|157077498|gb|ABV17206.1| conserved hypothetical protein [Escherichia coli E24377A]
          Length = 230

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L              F TP  V  +   + L    ALF+  P +  TL +P
Sbjct: 87  DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFENKPFI--TLSEP 139

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G        +     +++P    +    + +  +  +     
Sbjct: 140 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 197

Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294
           S   ++   L         + Y
Sbjct: 198 SLCNERRRVLLTPGHYLGNWSY 219


>gi|261884258|ref|ZP_06008297.1| type I restriction-modification system, M subunit [Campylobacter
           fetus subsp. venerealis str. Azul-94]
          Length = 39

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
            + ++ ++YE+LI  F S   +   +F TP +V  L
Sbjct: 4   NNDIIGDVYEYLIAHFASNAGKKGGEFYTPSEVSTL 39


>gi|217033703|ref|ZP_03439130.1| hypothetical protein HP9810_5g45 [Helicobacter pylori 98-10]
 gi|216943892|gb|EEC23329.1| hypothetical protein HP9810_5g45 [Helicobacter pylori 98-10]
          Length = 1296

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/364 (13%), Positives = 98/364 (26%), Gaps = 44/364 (12%)

Query: 43   RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            RL+   E          +        NI  +  + +       TS      +      +N
Sbjct: 755  RLKDIFEKNPEFFHGFLDSLKGNIHQNIKEDEALDM------ITSHIITKPIFDAIFGDN 808

Query: 100  LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +++ I+   D                 L+    LY+  K    +          ++ N+Y
Sbjct: 809  IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 864

Query: 160  EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218
                +    + SE      TP +VV                 +      T++DP  GTG 
Sbjct: 865  NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 924

Query: 219  FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            F+   ++   +  S    K   +      ++    + + +  +       D      KNI
Sbjct: 925  FIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQSRDGSLKNFKNI 984

Query: 277  QQGSTL----------SKDLFTG-------------KRFHYCLSNPPFGKKWEKDKDAVE 313
                +L          + DLF               +     + NPP+    + + D  +
Sbjct: 985  ALTDSLDIYEEKNDKGAFDLFKDLEENKEIKSTIEKQNIRVIIGNPPYSAGAKSENDNNQ 1044

Query: 314  KEHKNGELGRFGPGLPKISDGSMLF-----LMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                     +      K S   +       L+             G    V++   + + 
Sbjct: 1045 NLSHKKLEKKVYEKYGKNSTAQVGATTRDTLIQSIYMASDLLKDRGVLGFVVNGGFIDSK 1104

Query: 369  RAGS 372
             A  
Sbjct: 1105 SADG 1108


>gi|330937284|gb|EGH41297.1| Type I restriction enzyme (modification subunit) [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 346

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 15/121 (12%)

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +++       RF       + G +  + H+  + E      GR  +++  S LF   
Sbjct: 216 KYKKEDLDRDSYQRFDHA---SAKGPLAAVFHILAQTE------GRVILLVPDSLLFKPG 266

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           A   E  +R +LL    +EA+V+LPT        A  + IL+     E   +V  +  T+
Sbjct: 267 A---ERSLREYLLTRQRVEAVVSLPTGAAQGLKGACSILILNTVLASE---QVLFVKVTN 320

Query: 430 L 430
            
Sbjct: 321 E 321


>gi|306815671|ref|ZP_07449820.1| hypothetical protein ECNC101_03683 [Escherichia coli NC101]
 gi|305851333|gb|EFM51788.1| hypothetical protein ECNC101_03683 [Escherichia coli NC101]
          Length = 228

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 9/142 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L              F TP  V  +   + L    ALF++ P +  TL +P
Sbjct: 85  DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFEDKPFI--TLSEP 137

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G        +     +++P    +    + +  +  +     
Sbjct: 138 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 195

Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294
           S   ++   L         + Y
Sbjct: 196 SLCNERRRVLLTPGHYLGNWSY 217


>gi|319901638|ref|YP_004161366.1| hypothetical protein Bache_1796 [Bacteroides helcogenes P 36-108]
 gi|319416669|gb|ADV43780.1| hypothetical protein Bache_1796 [Bacteroides helcogenes P 36-108]
          Length = 589

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 91/299 (30%), Gaps = 35/299 (11%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E   LL +           P T+ D  M +++E +I               TP+ V    
Sbjct: 52  EDFDLLQEFVSKIHHFHPAPMTIED--MISLFEFVI---SPADRIVTGAVYTPKYVRENI 106

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQE 246
               L                + D  CG GGFL D    + +              +G +
Sbjct: 107 IETCL----NTIPNEHIQHIRVADIACGCGGFLMDVALFLHNNTGRAFYDIYQKSVYGID 162

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPF- 301
           ++  +       + +  L      D   N+ Q +TL  +        K F   + NPP+ 
Sbjct: 163 IQEYSVERTKILLSLLALLHGEDLDFDFNVLQANTLDFNTAEWNQDYKHFDVIVGNPPYV 222

Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
                     +  ++ E            +P        F       L    N GGR   
Sbjct: 223 CSRNVDATTKEKMLQYEVCLSGHP--DLYIP--------FFQIATEML----NDGGRLGF 268

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
           +  +S + +    +  +   R + +  +++        +F + +  T L+ L+  +  +
Sbjct: 269 ITMNSFIRSVNGRAVRNYFSRGIHDISILD---FRGYQVFQKKSTYTCLFFLTKNQASD 324


>gi|212693469|ref|ZP_03301597.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
 gi|212663982|gb|EEB24556.1| hypothetical protein BACDOR_02986 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 38/142 (26%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP +V      +L          SP     + D  CG G F    
Sbjct: 60  EYAEAKKEFEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                     + +P     +G +++ +  AV                    +I++     
Sbjct: 107 ----------NHLPNRHNVYGFDIDGKAVAVAK------------YLYPDAHIEKCDIRQ 144

Query: 284 KDLFTGKRFHYCLSNPPFGKKW 305
            D    +RF   + NPPF  K+
Sbjct: 145 YD--PEQRFDIIIGNPPFNLKF 164


>gi|213692204|ref|YP_002322790.1| putative DNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523665|gb|ACJ52412.1| putative DNA methyltransferase [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458332|dbj|BAJ68953.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 932

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 75/291 (25%), Gaps = 77/291 (26%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +  D       L  A     +     G +     +   +  ++ E  +     +      
Sbjct: 274 DRIDVPPLTGELRDA-----LLDISEGFDW--SGISPVIFGSLMEETLSH---DERRKGG 323

Query: 176 DFMTP-RDVVHLATALLLDPDDALFKESPGM-------------------IRTLYDPTCG 215
              T  R++  L   L LD   +  +++                           DP CG
Sbjct: 324 MHYTSVRNIHRLIDPLFLDGLKSELEQAEAKPVAGGARTNALNKLHDKIAGLRFLDPACG 383

Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL--------------------VPHGQELEPETHAVC 255
           +G FLT+    +    +                              HG E+     AV 
Sbjct: 384 SGNFLTETYLELRRIENRILADLDKDGQLALDLGDDLNPVRVSISHFHGIEINGFACAVA 443

Query: 256 VAGMLIRRLESDPRRDL------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPP 300
              + I   ++    +             + +IQQG+ L  D      G    Y + NPP
Sbjct: 444 RTALWIAEQQALDDTESTISGLPRLPFTDTAHIQQGNALRLDWNELLPGDHCDYVMGNPP 503

Query: 301 FG---KKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFL 339
           F     K     D ++        G         R         D +  F+
Sbjct: 504 FIGHVTKTAGQTDDLKTVWGRQYDGYLDYATGWYRKAASYLSKPDAAFAFV 554


>gi|254520789|ref|ZP_05132845.1| N-6 DNA methylase [Clostridium sp. 7_2_43FAA]
 gi|226914538|gb|EEH99739.1| N-6 DNA methylase [Clostridium sp. 7_2_43FAA]
          Length = 492

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 76/257 (29%), Gaps = 51/257 (19%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E +I     +       + TP  +    T  +++             +++ DP CG    
Sbjct: 10  EKIINDLSID-KRQIGYYSTPSFICDYITMKVME--------VNNNGKSVLDPCCGREEM 60

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                             ET+ +    ++  + E +     +  I+  
Sbjct: 61  LNPFNKF---------------------NIETYGI---DIIKYKEEYNCNFKNTDFIKYY 96

Query: 280 STL--SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                + +      + Y + NPP+     +     +KE K         G+    +   L
Sbjct: 97  YEFVSANNQIKNLNYDYYVLNPPYNCHEVQYIRDNKKELKKHFN---DVGV---HNMYGL 150

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+  +          G    I+   S L +         +R+ +L    I  I   PTDL
Sbjct: 151 FISAVI----DLAKDGAVIGIITHDSFLTSKSYQG----LRKKILNTCSIHEITMCPTDL 202

Query: 398 FFRTNIA--TYLWILSN 412
           FF       T + IL  
Sbjct: 203 FFEQGAEVRTSIVILQK 219


>gi|167764559|ref|ZP_02436680.1| hypothetical protein BACSTE_02949 [Bacteroides stercoris ATCC
           43183]
 gi|301312135|ref|ZP_07218054.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
 gi|167697228|gb|EDS13807.1| hypothetical protein BACSTE_02949 [Bacteroides stercoris ATCC
           43183]
 gi|300829810|gb|EFK60461.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
          Length = 246

 Score = 49.2 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L  R G +       F TP  +  L              +     + + DP
Sbjct: 85  DALGDLFMALSSRKGQQA---QGQFFTPVHICDLMVMC-------TETDGKKTGQRINDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + +  MLI     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTICNMLIHGCVGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF 292
              +    +L  + F     
Sbjct: 180 ---VIHHDSLCPENFMDGWM 196


>gi|313837684|gb|EFS75398.1| hypothetical protein HMPREF9621_00242 [Propionibacterium acnes
           HL037PA2]
 gi|314972623|gb|EFT16720.1| hypothetical protein HMPREF9622_00264 [Propionibacterium acnes
           HL037PA3]
          Length = 61

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 337 LFLMHLANKLELPPN---GGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           +F  H+   +         G R  +VLS SPLF+G+A  G+ +IRRW+
Sbjct: 1   MFFQHMLGHMSPVTEVSPQGSRVGVVLSGSPLFSGQASFGKRKIRRWM 48


>gi|72161128|ref|YP_288785.1| type II DNA modification enzyme [Thermobifida fusca YX]
 gi|71914860|gb|AAZ54762.1| putative type II DNA modification enzyme [Thermobifida fusca YX]
          Length = 1321

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 36/171 (21%)

Query: 148 DTVPDRVMSNIYEHLI---------------RRFGSEVSEGAEDFMTPRDVVHLATALLL 192
             +    +  +YE L+               R       +    + TP  +V       L
Sbjct: 441 QHLDAEELGLVYESLLNLVPYTDPAVRVFELRSAAGNDRKTTGSYYTPSSLVETLLDSTL 500

Query: 193 DPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVA----------------DCGS 232
           DP      +          T+ DP CG+G FL  A   +A                    
Sbjct: 501 DPVIEEHAKRGVPDDLLKITVCDPACGSGHFLVAAARRIARAYAVLEAGDEEPTPDAISR 560

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTL 282
                     +G +L P    +    + +  +E   P   L  +I+ G+ L
Sbjct: 561 AMPKVVRHCIYGVDLNPLAVELTKVSLWLASVEPGKPLAFLDDHIKVGNAL 611


>gi|120435726|ref|YP_861412.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
 gi|117577876|emb|CAL66345.1| type I restriction-modification system methyltransferase subunit
           [Gramella forsetii KT0803]
          Length = 991

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 25/304 (8%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYS---FYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
              E+     G++   + + +  G         S  S   L   + +++L   +  +   
Sbjct: 203 KYLEERKDSDGNSSFNQKYFRKYGNCKEFVDVLSRGSFVALL-DDLQHDLNGNLFDWKPQ 261

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRR--- 165
            K +    D S  +  L+              +        +P  ++S IYE  +     
Sbjct: 262 EKELIPSLDLSGLVEALKAYKTPEDSHNEILELIRYYEFSYIPVELISRIYEEFLAGGDD 321

Query: 166 --FGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
             F  +  +     F TP  +  L    ++      FK+       + DP CG+G FL  
Sbjct: 322 ALFSQKEKKQKDGIFYTPSHLAQLLVDEIMP--LHQFKDIDIKGFKILDPACGSGIFLVL 379

Query: 223 AMNHV---ADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           A   +       +  K P I          +G + E E   +    + +   +    + +
Sbjct: 380 AFKRLVQWWRLQNDLKKPDIQTLKDILDCIYGIDKEFEATKLAAFSLCLALCDELSPKQI 439

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              ++        +     F   L + P G    K + +  K+ K  +  R   G P   
Sbjct: 440 INELKFSDLTDNQILHSDFFIEHLLSLPGGDNDLKKQQSNFKKLKGIKFSR-IIGNPPFD 498

Query: 333 DGSM 336
            G++
Sbjct: 499 RGAL 502


>gi|266619952|ref|ZP_06112887.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479]
 gi|288868416|gb|EFD00715.1| N-6 DNA Methylase family protein [Clostridium hathewayi DSM 13479]
          Length = 1013

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 70/459 (15%), Positives = 126/459 (27%), Gaps = 117/459 (25%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP  +  L  + L           P     + D TCG G F     N +     
Sbjct: 73  ENGQFFTPPPICDLVVSCL----------KPSASDLIADLTCGMGNFF----NFL----- 113

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               P     +G E++ + + V                    NI+ G    +   +  RF
Sbjct: 114 ----PAESNAYGCEIDHKAYKVA------------HYLYPKANIELGD--IRTYESDIRF 155

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + + NPPF  KW  +  +                        ML  ++   K       
Sbjct: 156 DFVIGNPPFHLKWYLEDGS-----------------------EMLSQIYYCVKAAELLKP 192

Query: 353 GGRAAIVLSSSPL---FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATY 406
            G  A+++  S L   F         E R   L        VALP + F         T 
Sbjct: 193 FGIMALIVPQSFLADTFTDGRLIQAMENRYSFLGQ------VALPDNAFLSMGAGRFPTK 246

Query: 407 L-----------WI---------------LSNRKTEERRGKVQLINATDLWTSIRNEG-- 438
           L           W+                  +   +R     L  A       ++    
Sbjct: 247 LQFWQRRSGLEGWVPLPYTTKPGLSLTAGFHIQSEAKRIYDCFLEKARSDLEVHKSHILL 306

Query: 439 --KKRRIINDDQRRQILD-IYVSRENGK-FSRMLDYRTFGYRRIKVLRPLRMSF-ILDKT 493
              K R  + + + +I   +Y  + + +  SR      + YR     +P  M++    + 
Sbjct: 307 ELAKSRDTSAEFQYKIKKLLYHIKIHPETKSRYTKCCEYLYRFCTERKPDEMTYEEWCRV 366

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
            +   +     RK            +  +++Q Y + +     K   + +      ++  
Sbjct: 367 RITEKKVLSYLRKTLKRQNLPPERDVIALVKQNYHFAYKGYSAKIRRQMD----YDLRVK 422

Query: 554 KSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYEN 592
                A +     + P    +              +YEN
Sbjct: 423 TPIYQAVLENSPERYPGYARLLRGK--------RRDYEN 453


>gi|256544790|ref|ZP_05472162.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
 gi|256399679|gb|EEU13284.1| superfamily II DNA and RNA helicase [Anaerococcus vaginalis ATCC
            51170]
          Length = 3649

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/399 (14%), Positives = 121/399 (30%), Gaps = 72/399 (18%)

Query: 31   FGKVILPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN 82
            + +  LPF+ L+ ++          L   R    +K L       +  + ++    +   
Sbjct: 1773 YREFTLPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNNLIRNDRENIEG 1832

Query: 83   TSEYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
             SE SL      N   NL       ++  A  + +  +  +  AR ++  +L K      
Sbjct: 1833 VSEVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGG 1892

Query: 142  GIELHPDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
              ++  +          + + E+L    +          F TP+ V+             
Sbjct: 1893 LSDVFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE-------- 1944

Query: 198  LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
                       + +P+ GTG F+ +    + +             +G EL+  +  +   
Sbjct: 1945 SLSNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK- 1993

Query: 258  GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                           + NI Q     +  F+   F   + N PFG     +    ++E++
Sbjct: 1994 -----------ELYPNSNI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKIADREYE 2036

Query: 318  NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                             + L   +   K       GG  A +       +G       ++
Sbjct: 2037 RN---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDV 2076

Query: 378  RRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            RR++ E       + LP   F     T + + +  L  R
Sbjct: 2077 RRYISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKKR 2115


>gi|189466897|ref|ZP_03015682.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
 gi|189435161|gb|EDV04146.1| hypothetical protein BACINT_03279 [Bacteroides intestinalis DSM
           17393]
          Length = 1000

 Score = 49.2 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 38/142 (26%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP +V      +L          SP     + D  CG G F    
Sbjct: 60  EYAEAKKEFEMGQFFTPHEVCRDMVDVL----------SPTSSEMILDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                     + +P     +G +++ +  AV                    +I++     
Sbjct: 107 ----------NHLPNQHNAYGFDIDSKAVAVAR------------YLYPDAHIEKCD--I 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKW 305
           +   + +RF   + NPPF  K+
Sbjct: 143 QQYHSEQRFDAIIGNPPFNLKF 164


>gi|298377202|ref|ZP_06987156.1| type I restriction enzyme, M subunit [Bacteroides sp. 3_1_19]
 gi|298266186|gb|EFI07845.1| type I restriction enzyme, M subunit [Bacteroides sp. 3_1_19]
          Length = 255

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 51/160 (31%), Gaps = 31/160 (19%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        + A         + + DP
Sbjct: 85  DAFGDLFMAISSKIGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + V  ML+     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTVCNMLVHGCIGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF---HYCLSNPPFGKKWEKDK 309
              +    +L  + F            +  P  ++  K++
Sbjct: 180 ---VIHHDSLFPENFMDGWMVNHTLTQTGIPTIRRMSKEE 216


>gi|315282518|ref|ZP_07870911.1| adenine-specific methyltransferase [Listeria marthii FSL S4-120]
 gi|313613835|gb|EFR87586.1| adenine-specific methyltransferase [Listeria marthii FSL S4-120]
          Length = 335

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 96/300 (32%), Gaps = 49/300 (16%)

Query: 135 KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           K+ +++  IEL   +  +     +   L++  G +        MTP  +  +   LL   
Sbjct: 60  KLQESYDSIELENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL--- 113

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                        ++ DP CGT   LT  +N +       K    +   G +++    ++
Sbjct: 114 ---EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELKGNVEVHASGVDVDDLLISL 165

Query: 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDA 311
                 +   +   ++           L +D             +S+ P G  +  D++A
Sbjct: 166 A-----LVGADLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENA 211

Query: 312 VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
              E    E   F            LF+       +     GG    ++  +        
Sbjct: 212 KTFELCREEGHSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFA 258

Query: 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430
             +    +++ +N  IE I+ LP  LF        + IL       +   +V L N + L
Sbjct: 259 KVD----KFIKKNGHIEGIIKLPETLFKTEQARKSILILQKADVNVKPPKEVLLANLSSL 314


>gi|89885781|ref|YP_515979.1| helicase-like [Rhodoferax ferrireducens T118]
 gi|89347779|gb|ABD71981.1| helicase-like [Rhodoferax ferrireducens T118]
          Length = 1726

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/500 (11%), Positives = 125/500 (25%), Gaps = 104/500 (20%)

Query: 91  LGSTNTRNNLESYIASFSDNAK--AIFEDFDFSSTIARLEKAGLLYKI-----CKN-FSG 142
           L + +   +L   +  F  N +   +    +   T   L +   L +       K+ F  
Sbjct: 93  LLAKDVHEDLRGQVTKFDANVEAIELLRVLEAEMTPPTLAQRQTLNRYTGWGGIKHPFDS 152

Query: 143 IELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
                    +R      + L+    F S          TP  V+     +         +
Sbjct: 153 PYHLAQEWVNRAK--QLKSLLSEDEFESAKESTLNAHFTPIPVIDQLWTI--------LR 202

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG-------SHHKIPPILVPHGQELEPETHA 253
           +       + +P  G G  L    + +A                 + V +G         
Sbjct: 203 QIGFTGGRIIEPAGGIGFMLGAMPSDIAQRSSVTAVEIDDLSARFLKVLYGSHANVLHMG 262

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313
                +                              + F   + N PFG     D     
Sbjct: 263 FEKTNL----------------------------PEQYFDLVIGNVPFGNYSVGDLR--- 291

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                           + +        +   +       GG  A++ S+  + N      
Sbjct: 292 ----------------RKTYSDWAIHNYFVGRSLDLVRPGGLVAVITSAYFMDNSN---- 331

Query: 374 ESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
             ++R  +     +   + LP   F     T++   L IL  R + E   +         
Sbjct: 332 -DKVRDVIARKAKLLGAIRLPAGTFSEIANTDVVADLVILQKRSSTETLTR--------- 381

Query: 431 WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT--FGYRR---------IK 479
                N  +   ++++D  +  +  Y   +N   S  +       G            I 
Sbjct: 382 -EERENWVETTLLLDEDGTKMRVGNYTQGQNV-NSYWMKNPQAVVGVWTEISRNQGQSIV 439

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKES 539
              P     +++    +++     +   +   +   L +       +      E      
Sbjct: 440 PKLPKGADLMVEMERASKVIPQGVYAPATQQVKEVLLAVADGSNAVLPGSYVIEGGDIYR 499

Query: 540 IKSNEAKTLKVKASKSFIVA 559
              +  +   VK  K+  +A
Sbjct: 500 FNGHSLEKTGVKGKKAERIA 519


>gi|271968783|ref|YP_003342979.1| hypothetical protein Sros_7557 [Streptosporangium roseum DSM 43021]
 gi|270511958|gb|ACZ90236.1| hypothetical protein Sros_7557 [Streptosporangium roseum DSM 43021]
          Length = 709

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
           +    ++      G  A ++  +  L +   G+ E+++R  LL + ++EA+V LP  +  
Sbjct: 317 LEGVERISDLLGPGCTALVLGPADALVDALPGTEEAQLRSGLLRSGVVEAVVNLPGGVTP 376

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           +R      LW+L+    +  RG V L + +D 
Sbjct: 377 YRPGYRCALWVLTRDPVDAARGYVLLADISDE 408


>gi|187940164|gb|ACD39294.1| hypothetical protein PACL_0506 [Pseudomonas aeruginosa]
          Length = 1490

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 28/145 (19%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-------TLYDPTCGTGGF 219
                +    + TP  +V       L+P       +             + DP CG+G F
Sbjct: 472 AGNARKLTGSYYTPDSLVQALIKSALEPVIEQRLAANPANPTAALLAIRVIDPACGSGHF 531

Query: 220 LTDAMNHV--------------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           L  A   +                     D     +       +G +  P    +    +
Sbjct: 532 LLAAARRLAEKLAQLRSLEGGQEGAIQPQDYRHALREVVTHCIYGVDRNPMAIELARMAL 591

Query: 260 LIRRL-ESDPRRDLSKNIQQGSTLS 283
            +    E  P   L  ++Q G  L 
Sbjct: 592 WLEGFEEGRPLGFLDHHLQVGDALL 616


>gi|116329163|ref|YP_798883.1| methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116121907|gb|ABJ79950.1| Methylase [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 545

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 33/256 (12%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++    F TP  V       +L           G+ R + DP  G G F    ++ +
Sbjct: 8   KNKNKFLGQFFTPERVAGFLVDWILG--AERITSQEGLKR-ILDPAIGNGIFFESVLDKL 64

Query: 228 ADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            +  +                    + +  A  ++   + D                   
Sbjct: 65  PNLDAEWVGFDLDAQCLSASRSALENRISKAS-ILSFYDRDFLL---------------Q 108

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              ++F   L NPP+    +       +E      G+    LP  ++  + FL+   N  
Sbjct: 109 KENQKFDAILCNPPYR---KISDKNYSRELIQQFEGKSERKLPGTANLYVFFLLKCLN-- 163

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIA 404
               N GGRAA ++      +G     +S     L E+ L+ ++        LF     +
Sbjct: 164 --LINVGGRAAFLVPQDFFNSGYGVFIKSA----LQESGLLHSLFLFSPQDSLFDEAITS 217

Query: 405 TYLWILSNRKTEERRG 420
           + + +L N + E++ G
Sbjct: 218 SCILLLENSEKEKKSG 233


>gi|220930539|ref|YP_002507448.1| helicase [Clostridium cellulolyticum H10]
 gi|220000867|gb|ACL77468.1| helicase domain protein [Clostridium cellulolyticum H10]
          Length = 2077

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/383 (13%), Positives = 100/383 (26%), Gaps = 77/383 (20%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
           LE + +  R +       N    +  K   Y  YN S          +     +      
Sbjct: 440 LEDSENQKRPQNEIEQDQNEYTAAISKKVNYR-YNPS---------DDIGAGGQKTKYKA 489

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLL------YKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +  A  + +D +    IA  ++  +L        + + F+          +         
Sbjct: 490 NVEAIKLLKDIEKEKRIATSQEQSILTRYTGWGGLSQVFN---AEAKGWENEYQELKELL 546

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
               + S  +       T   V+                        + +P  G G F +
Sbjct: 547 TEEEYSSARASTPNAHYTEPQVIKAIYK--------ALSRFGFKGGNILEPAMGIGLFYS 598

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                ++D             +G EL+  +  +              +     +I+    
Sbjct: 599 LIPEDISD---------KSQLYGVELDSISGRISK------------QLYQKADIRIQ-G 636

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                F+   F   + N PFG  ++      +K + N                      +
Sbjct: 637 FEDTDFSDNFFDIAVGNVPFG-DYKLRDKRYDKLNLNIHD-------------------Y 676

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--- 398
              K       GG  A + S   L            RR+L E   +   + LP + F   
Sbjct: 677 FFAKTLDKVRPGGIIAYITSKGTL-----DKANGSFRRYLAERAELIGAIRLPNNAFKQI 731

Query: 399 FRTNIATYLWILSNRKTEERRGK 421
             T++ T +  L  R       +
Sbjct: 732 ANTDVTTDIIFLQKRDHAIILDE 754


>gi|47096795|ref|ZP_00234377.1| conserved domain protein [Listeria monocytogenes str. 1/2a F6854]
 gi|47014828|gb|EAL05779.1| conserved domain protein [Listeria monocytogenes str. 1/2a F6854]
          Length = 321

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 107/334 (32%), Gaps = 52/334 (15%)

Query: 101 ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            SY+ +  +  + +F+          L     L K+ +++  IEL   +  +     +  
Sbjct: 15  ISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIELENFSNEEIRKG-LQL 70

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L++  G +        MTP  +  +   LL                ++ DP CGT   L
Sbjct: 71  ALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIQKKKNISILDPACGTANLL 122

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T  +N +       K    +   G +++    ++      +   +   ++          
Sbjct: 123 TTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL------- 165

Query: 281 TLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            L +D             +S+ P G  +  D++A   E    E   F            L
Sbjct: 166 -LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFL 214

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+       +     GG    ++  +          +    +++ +N  IE I+ LP  L
Sbjct: 215 FIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETL 266

Query: 398 FFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430
           F        + IL       +   +V L N + L
Sbjct: 267 FKSEQARKSILILRKADVNVKPPKEVLLANLSSL 300


>gi|312128987|ref|YP_003996327.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132]
 gi|311905533|gb|ADQ15974.1| N-6 DNA methylase [Leadbetterella byssophila DSM 17132]
          Length = 1805

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 99/319 (31%), Gaps = 68/319 (21%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG-----------AEDFMTP 180
           +L  I                  ++     L++       +               F TP
Sbjct: 49  VLNPIENAIDINHWRKTEHDLFPLTQELHTLLKENSENDKQYRRYVDSMKSSVLTAFYTP 108

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             ++   +A L +    + K          +P+ G G F+     +     + ++   + 
Sbjct: 109 PQIIDAVSATLRENGLDIQK--------FLEPSAGIGSFIQSFSENQKASTTAYEKDLLT 160

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
               ++L PE      + + +   E    ++ +                  +    SN P
Sbjct: 161 GKVLKQLYPE------SNVRVSGFEEISEKEHNS-----------------YDVVASNIP 197

Query: 301 FGKKWEKDKDAVE-KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           FG     D      KE    +  R        S  +  FL     K       GG  A +
Sbjct: 198 FGDTSVFDLSYSRSKETAKVQATR--------SIHNYFFL-----KGTDMLREGGLLAYI 244

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTE 416
            S   L + +       IRR L++++ + ++V LP +LF     T + + L IL     +
Sbjct: 245 TSQGILNSPKNEP----IRRALMQDNNLVSVVRLPNNLFTEYAGTEVGSDLIILQKNTAK 300

Query: 417 ERRGKVQLINATDLWTSIR 435
           +      L  A +L+   R
Sbjct: 301 KG-----LTEAEELFCQSR 314


>gi|149176311|ref|ZP_01854926.1| putative DNA methylase [Planctomyces maris DSM 8797]
 gi|148844913|gb|EDL59261.1| putative DNA methylase [Planctomyces maris DSM 8797]
          Length = 1245

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 71/243 (29%), Gaps = 43/243 (17%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE---------LHPDTVPDRVMSNIY 159
              + +F + +    + +        ++   F  I+                 R + ++Y
Sbjct: 132 PGTREVFSEHNPLRELPQWLSGDAAGELLDFFQKIDANAGGLVHDFTDADWDTRFLGDLY 191

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM------------IR 207
           + L         +      TP  V        L+P    F                    
Sbjct: 192 QDL----SEAARKKYALLQTPEFVEEFILDRTLEPALDEFGLDAPPVNDPQGHPVTQAGF 247

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHGQELEPETHAVCVAG 258
            + DP CG+G FL      + D     +    +           HG ++ P   A+    
Sbjct: 248 RMIDPACGSGHFLLGTFPRLLDRWFRQQPGGKVRDLVQKTLDSIHGVDVNPYAIAIARFR 307

Query: 259 MLIRRLES-DPRRDLSK-----NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           +L++ +++ D  +  +      ++  G +L     +  R    + +        + + A 
Sbjct: 308 LLLKAMQACDIHQLKNAPAFTLHLACGDSLL---HSPLRGGQQVFDFELTSDDAECEHAY 364

Query: 313 EKE 315
           + E
Sbjct: 365 QSE 367


>gi|317476919|ref|ZP_07936162.1| type I restriction enzyme [Bacteroides eggerthii 1_2_48FAA]
 gi|316907094|gb|EFV28805.1| type I restriction enzyme [Bacteroides eggerthii 1_2_48FAA]
          Length = 239

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  +  L         +          + + DPTCG+G  L     H       
Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               P     G+++      + V  ML+     +             +L    FT   + 
Sbjct: 148 ---NPGNYLVGEDISRTCCMITVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328
              + P  G    +     E  +   E  GRF   +
Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231


>gi|212692341|ref|ZP_03300469.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
 gi|212665218|gb|EEB25790.1| hypothetical protein BACDOR_01837 [Bacteroides dorei DSM 17855]
          Length = 1000

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 38/142 (26%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP +V      +L          SP     + D  CG G F    
Sbjct: 60  EYAEAKKEFEMGQFFTPHEVCRDMVDVL----------SPTSSEMILDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                     + +P     +G +++ +  AV                    +I++     
Sbjct: 107 ----------NHLPNQHNAYGFDIDSKAVAVAR------------YLYPDAHIEKCD--I 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKW 305
           +   + +RF   + NPPF  K+
Sbjct: 143 QQYHSEQRFDAIIGNPPFNLKF 164


>gi|124262642|ref|YP_001023112.1| hypothetical protein Mpe_B0098 [Methylibium petroleiphilum PM1]
 gi|124261888|gb|ABM96877.1| hypothetical protein Mpe_B0098 [Methylibium petroleiphilum PM1]
          Length = 455

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/226 (21%), Positives = 76/226 (33%), Gaps = 31/226 (13%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R    +    +    T   VV+    +L           P   R L DP+CG G FL  A
Sbjct: 9   RELAIDALHASTAIYTADPVVNQLLDMLDW---------PNGTRRLVDPSCGDGAFLGRA 59

Query: 224 MNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAG----MLIRRLESDPRRDLSKNI-Q 277
           +  +     +        V  G E+     +   A     ++    ++   R L++ I +
Sbjct: 60  LERLLLAYPNIDDARLSHVIEGWEIHFFAVSEARARVAGVLVTHGRQAADARALAEEIVR 119

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            G  L +       +H    NPP+  ++      +  +++          LP  +   ML
Sbjct: 120 HGDFLLE-GPREPVYHAIAGNPPY-LRFANVPQPLRDDYERE--------LPDYATADML 169

Query: 338 --FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             FL   A  L     G G  A V S   LFN  A      I + L
Sbjct: 170 HSFLDRCALSLH----GDGEIACVTSDRWLFNENAARLREAIGQRL 211


>gi|52842547|ref|YP_096346.1| protein methyltransferase HemK [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629658|gb|AAU28399.1| protein methyltransferase HemK [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 287

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168
            + F   +   +LE   LL  +        F+    HPD +        Y  +I++    
Sbjct: 12  LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67

Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
                  G  +F +           PR        L L+              ++ D   
Sbjct: 68  LPIAYITGQREFWSLSLKVTPNVLIPRHETERLVELALELIPD------KENVSVLDLGT 121

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G                 K  P+      +   E   +         L          
Sbjct: 122 GSGAIALAL----------AKERPLWHIDACDFSKEALELARYNAKTLGLN--------- 162

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           NI    +   +    K++H  +SNPP+  +           H      RF P    +S  
Sbjct: 163 NINFCHSYWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKHGDVRFEPTSALVSSQ 214

Query: 335 S-MLFLMHLANKLELPPNGGG 354
             +  L ++           G
Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235


>gi|268611027|ref|ZP_06144754.1| methylase [Ruminococcus flavefaciens FD-1]
          Length = 918

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 56/222 (25%), Gaps = 54/222 (24%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             +  +  + +  +     +   +   ++E  +     E         T  + +H     
Sbjct: 285 DEIVSLLLHNASEDFDWSGISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDP 341

Query: 191 LLDPD-----DALFKESPGMIRT--------------LYDPTCGTGGFLTDAMNHVADCG 231
           L   D     + +        R                 DP  G+G FLT+    +    
Sbjct: 342 LFLDDLKAELEEIKTLKVEKTRRDRLQAFRKKLSTLVFLDPAAGSGNFLTETYISLRRLE 401

Query: 232 SHHKIPPIL----------------VPHGQELEPETHAVCVAGMLIRRLESDPRRD---- 271
           +                          +G E+      V    + I   +     D    
Sbjct: 402 NDALYEETHGQMMLGDNDVIQVSIGQFYGIEINDFAVTVAKTALWIAESQMMQETDTLMQ 461

Query: 272 ---------LSKNIQQGSTLSKDLFT---GKRFHYCLSNPPF 301
                       NI +G+ L  D  +     +  Y + NPPF
Sbjct: 462 INLDFLPLKSYANIVEGNALRTDWKSVVDKSKLSYIMGNPPF 503


>gi|323181484|gb|EFZ66911.1| N-6 DNA Methylase family protein [Escherichia coli 1357]
          Length = 610

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 73/249 (29%), Gaps = 48/249 (19%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A    ++   F      P      ++ +IY  ++    S        + TP  +V     
Sbjct: 101 AERTGELIAQF------PAEDAGYLIGSIYTVML---PSAYRSELGAYYTPPPLVARLLD 151

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG----- 244
           L                 ++ DP CG G FL  A   +          P  +        
Sbjct: 152 LAEKSGVDFS------HASVIDPACGGGAFL--APVAIRMLKKDKGSSPEWMLRRISRRL 203

Query: 245 QELEPETHAVCVAGMLIRRLESDPR------RDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           + +E +  A     +++      P       R     I     L +D F+G  +   + N
Sbjct: 204 KGIEIDPFA-AWMSLVLLESVLMPLCVKVKRRLPEDTIIVADALQQDKFSG--YDLVVGN 260

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRA 356
           PP+G+     K          +  R   G       ++  LF       ++      G  
Sbjct: 261 PPYGRVTLDIKT-------REKYSRSLFGH-----ANLYGLFTDLAVRMVKEKT---GVI 305

Query: 357 AIVLSSSPL 365
           A +  +S L
Sbjct: 306 AFLTPTSFL 314


>gi|300867418|ref|ZP_07112073.1| N-6 DNA Methylase family [Oscillatoria sp. PCC 6506]
 gi|300334608|emb|CBN57241.1| N-6 DNA Methylase family [Oscillatoria sp. PCC 6506]
          Length = 1067

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 42/221 (19%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L  L ++    +L   I    D+   +    D +  +    +         +F       
Sbjct: 245 LRRLFNSIIETDLLGQINWAIDDLVELLGRVDMTVILENFGRRTRQSDPVVHF------- 297

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL------------LLDPD 195
                      YE  +  +   + +    + TP  VV                  L   D
Sbjct: 298 -----------YETFLAAYNPALRKSRGVYYTPEPVVSFIVRSVDYILKNRFNLPLGLAD 346

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL----------VPHGQ 245
           +    ++      + DP  GTG FL   ++ +        I                 G 
Sbjct: 347 NTKNPDTQKPRVQILDPATGTGTFLYGVVDRIYQNLEDMGISGSWNQYVQENLLTRLFGF 406

Query: 246 ELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           EL    +A+     G+ ++ L  +        +   +TL +
Sbjct: 407 ELLMAPYAIAHLKLGLQLQNLGYEFSSKQRLGVYLTNTLDE 447


>gi|74312097|ref|YP_310516.1| putative methylase [Shigella sonnei Ss046]
 gi|73855574|gb|AAZ88281.1| putative methylase [Shigella sonnei Ss046]
          Length = 610

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 73/249 (29%), Gaps = 48/249 (19%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A    ++   F      P      ++ +IY  ++    S        + TP  +V     
Sbjct: 101 AERTGELIAQF------PAEDAGYLIGSIYTVML---PSAYRSELGAYYTPPPLVARLLD 151

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG----- 244
           L                 ++ DP CG G FL  A   +          P  +        
Sbjct: 152 LAEKSGVDFS------HASVIDPACGGGAFL--APVAIRMLKKDKGSSPEWMLRRISRRL 203

Query: 245 QELEPETHAVCVAGMLIRRLESDPR------RDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           + +E +  A     +++      P       R     I     L +D F+G  +   + N
Sbjct: 204 KGIEIDPFA-AWMSLVLLESVLMPLCVKVKRRLPEDTIIVADALQQDKFSG--YDLVVGN 260

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRA 356
           PP+G+     K          +  R   G       ++  LF       ++      G  
Sbjct: 261 PPYGRVTLDIKT-------REKYSRSLFGH-----ANLYGLFTDLAVRMVKEKT---GVI 305

Query: 357 AIVLSSSPL 365
           A +  +S L
Sbjct: 306 AFLTPTSFL 314


>gi|317481229|ref|ZP_07940300.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
 gi|316902562|gb|EFV24445.1| hypothetical protein HMPREF1007_03419 [Bacteroides sp. 4_1_36]
          Length = 1662

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 101/356 (28%), Gaps = 62/356 (17%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          +     A F+ +   ++T  +P+ G GGFL  A            
Sbjct: 98  AFYTPT----FFVQTVATQIQAAFRNNGLQMKTFLEPSAGIGGFLPIA------------ 141

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294
                        P T++       +  L     +D ++ I  G  T+ +     K F  
Sbjct: 142 ------------TPATYSYAFEKDNVTGLVLSALQDGTRIIIDGFETIDEQDIDHKTFDV 189

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             SN PFG           K        +              F+M   +KL    N GG
Sbjct: 190 VASNIPFG---------NFKVFDYDFYNKDSVHAQATKSIHCYFIMKGIDKL----NEGG 236

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411
             A +                 +R +L+ N  +   + LP  LF +T    +    +I  
Sbjct: 237 IIAFIAPRGV----ADAPANKFLRNYLVHNANMITALRLPDTLFMQTGGIEVGCDFFIFQ 292

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
                    K  L +   L+  +  E         +   +I            S++   +
Sbjct: 293 K-----HSHKAILTSKEQLFLQVAKETVPDTKYTTEYFNRIF-TLSKTVVATMSQIQKNQ 346

Query: 472 TFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIY 527
              Y R       +  +   +  ++   +D+    L    +          ++ I 
Sbjct: 347 FGKYVR-------KYQWQGTEDAMSMHLSDLLKSDLERYFRKGLFQAQGKEIKNIQ 395


>gi|258648838|ref|ZP_05736307.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260850951|gb|EEX70820.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 2321

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 109/351 (31%), Gaps = 44/351 (12%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISDALVSTNLQVRRCLDPSAGMGAF---AETFARQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + +     +   +L                  ++    SN PFG     D  
Sbjct: 166 LHPYGKGNIFVHNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYNRGKDTLKRESTRTIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ +F     T++ + L +L  + ++E    +  Q +
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTSKEISEDIEQQFV 315

Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--DYRTFGYRRIKVLR 482
               +      +   K+  +     + I    V+ E    +         + +       
Sbjct: 316 ETVSVPKEEGSSVVFKQNSLFVGDWKDISHRTVATERIMGTDPYGRPAWEYRFTGGIEEM 375

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
              +   L      R++  + +    P+ +  W   +  ++Q++     AE
Sbjct: 376 AESLRTQLSLEMGQRIDRKL-YETGIPMTKEEWQVRVNEILQKLGVTVQAE 425


>gi|303237812|ref|ZP_07324370.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
 gi|302482037|gb|EFL45074.1| helicase C-terminal domain protein [Prevotella disiens FB035-09AN]
          Length = 2068

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/397 (13%), Positives = 116/397 (29%), Gaps = 63/397 (15%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH------VADCGSHHKIPPILVPHG 244
           ++             IR   DP+ G G F             +       +I   + P+G
Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMGAFTETFAKRAGMVDAMEKDLLTARISQSIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q             +++R+   +   +L                 +++    SN PFG  
Sbjct: 171 QG-----------NIIVRQEPFEAIGELED--------------KEKYDLITSNIPFG-- 203

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D    ++E+  G+          I +       +   K       GG  A + S   
Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           L + R       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    
Sbjct: 254 LDSPRNE----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEG 309

Query: 422 V--QLINATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR-- 476
           +  Q +    +      +   K   +     + I    ++ E    +       + YR  
Sbjct: 310 IEQQFVETLSVPKEEGSSVVFKHNSLFAGDWKDIAHRIIATERTMGTDPYGKPAWEYRFD 369

Query: 477 --------RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                    I+    L +    D+             +     +      +   + +  P
Sbjct: 370 GSIDDMAKSIRTQLSLEVEQRFDRKLYETGIPMTEEERQKEAEKQLRKLGITVNLPKEDP 429

Query: 529 YGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
               E+    ++  +  +    K   +      +   
Sbjct: 430 KVHKEADNAYNLMPDSIRKRLPKLYSTEKELIGDKVA 466


>gi|241664253|ref|YP_002982613.1| type II DNA modification enzyme [Ralstonia pickettii 12D]
 gi|240866280|gb|ACS63941.1| putative type II DNA modification enzyme [Ralstonia pickettii 12D]
          Length = 1306

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 47/182 (25%)

Query: 149 TVPDRVMSNIYEHLI------------RRFG-----------SEVSEGAEDFMTPRDVVH 185
            +    + ++YE L+            R FG               +    + TP  +V 
Sbjct: 417 DMDSEELGSVYESLLELVPVVTLGGGARIFGFVGDDEEGSTKGNARKLTGSYYTPDSLVQ 476

Query: 186 LATALLLDP-DDALFKESPGM------IRTLYDPTCGTGGFLTDAMNHVAD--------- 229
                 L+P      K +P          ++ DP CG+G FL  A   +A+         
Sbjct: 477 ELIKSALEPVIAQTLKANPQEPVKALLGLSVCDPACGSGHFLLAAARRIAEEVAQLNAAD 536

Query: 230 -------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGST 281
                       +       +G +  P    +    + +     D P   L  +++ G  
Sbjct: 537 GNPLPDDYRHALRDVVAHCIYGVDKNPMAVELARTALWLEAYTPDRPLTFLDHHLRCGDA 596

Query: 282 LS 283
           L 
Sbjct: 597 LL 598


>gi|317180447|dbj|BAJ58233.1| Type IIG restriction-modification enzyme [Helicobacter pylori F32]
          Length = 1149

 Score = 48.8 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 76/577 (13%), Positives = 157/577 (27%), Gaps = 71/577 (12%)

Query: 43  RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           RL+   E          +       SNI  +  + +       TS      +      +N
Sbjct: 357 RLKDIFEKNPEFFHGFLDSLRGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 410

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +++ I+   D                 L+    LY+  K    +          ++ N+Y
Sbjct: 411 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 466

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218
               +    + SE      TP +VV                 +      T++DP  GTG 
Sbjct: 467 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQNITIFDPFTGTGS 526

Query: 219 FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           F+   ++   D  S    K   +      ++    + + +  +       D      KNI
Sbjct: 527 FIARLLSKENDLISDESLKEKFLNHLFAFDIVLLAYYIALINITQAAQNRDGSLKNFKNI 586

Query: 277 QQGSTL-----SKDLF------------------TGKRFHYCLSNPPF--GKKWEKDKDA 311
               +L       D                      +     + NPP+  G K + D + 
Sbjct: 587 ALTDSLDFYEEKNDKGVFDFFKDLEENKEIKSTIEKQNIRVIIGNPPYSAGAKSQNDNNQ 646

Query: 312 VEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                K  +      G     K+   +   L+             G    V++   +   
Sbjct: 647 NLLHKKLEKRVYEKYGQISTAKVGATTRDTLIQSIYMASELLKDKGVLGFVVNGGFI--- 703

Query: 369 RAGSGESEIRRWLLENDLIEAIVAL--------------PTDLFFRTNIATYLWILSNRK 414
            + SG+   R+ + +      ++ L                 +F   + AT   I   + 
Sbjct: 704 DSKSGDG-FRKCVAKEFAHLYVLNLRGNARTSGENRKKEGDGIFDSGSRATIAIIFFVKD 762

Query: 415 TEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
              +   +   +  D         +    ++ D        + +         ++ R  G
Sbjct: 763 ASVKNSAIHYYDIGDYLKREDKLNRLAHFLDLDAIP-----FETITPNNKGDWINQREDG 817

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           + ++    PL+    L    +  + ++       P   +F  D L   +Q+      A+ 
Sbjct: 818 FDKLI---PLKRDKKLQNNSIFDINSNGVTSGRDPWVYNFSPDSLMQNVQKCMDTYNADL 874

Query: 535 FVKESIKSNEAKTL-KVKASKSFIVAFINAFGRKDPR 570
               +      K   K   S        ++    D  
Sbjct: 875 KHFNAHFREAFKQRTKGVKSGELYKQLNDSEITTDKT 911


>gi|154491462|ref|ZP_02031088.1| hypothetical protein PARMER_01071 [Parabacteroides merdae ATCC
           43184]
 gi|160890077|ref|ZP_02071080.1| hypothetical protein BACUNI_02517 [Bacteroides uniformis ATCC 8492]
 gi|154088476|gb|EDN87521.1| hypothetical protein PARMER_01071 [Parabacteroides merdae ATCC
           43184]
 gi|156860465|gb|EDO53896.1| hypothetical protein BACUNI_02517 [Bacteroides uniformis ATCC 8492]
          Length = 246

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 20/121 (16%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L  R G +       F TP  +  L              +     + + DP
Sbjct: 85  DALGDLFMALSSRKGQQA---QGQFFTPVHICDLMVMC-------TETDGKKTGQRINDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + +  MLI     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTICNMLIHGCVGEVIHHD 184

Query: 273 S 273
           S
Sbjct: 185 S 185


>gi|133757317|ref|YP_001096236.1| hypothetical protein pLEW279a_p37 [Corynebacterium sp. L2-79-05]
 gi|110084201|gb|ABG49355.1| hypothetical protein [Corynebacterium sp. L2-79-05]
          Length = 581

 Score = 48.4 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 54/195 (27%), Gaps = 51/195 (26%)

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH--------------------HKIPPILVPHGQELE 248
             DP CG G FL  A   +    +                      +   I   +G EL 
Sbjct: 31  FCDPACGAGNFLLTAYKELRRIETDLIVAIRQRRGETGMSLNIEWEQKLSIGQFYGFELN 90

Query: 249 PETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDLFTGKRF--- 292
                +    M +   +++     +              +I  G+ L+ D          
Sbjct: 91  WWPAKIAETAMFLVDHQANKELANAVGRPPQRLPITITAHIVHGNALALDWTEALPKAVG 150

Query: 293 -HYCLSNPPFG---KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +   NPPF     + ++  + ++   +   + R                      L+L
Sbjct: 151 ETFIFGNPPFIGQDTRTKQQLEEMKAVWRRKNISRLDYVT-----------CWHIKSLDL 199

Query: 349 PPNGGGRAAIVLSSS 363
                GR A V ++S
Sbjct: 200 FSTRNGRFAFVTTNS 214


>gi|225155242|ref|ZP_03723736.1| helicase domain protein [Opitutaceae bacterium TAV2]
 gi|224803997|gb|EEG22226.1| helicase domain protein [Opitutaceae bacterium TAV2]
          Length = 1642

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 67/256 (26%), Gaps = 58/256 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  +       T   V+            A  +        + +P CG G F     
Sbjct: 104 EYRSARATVLNAHYTSPTVIRAMY--------AALERLGFERGRVLEPACGLGHFFGLMP 155

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +                G E++P T  +              +     +I+  +   +
Sbjct: 156 ETMRS---------RSELTGIEIDPLTARLA------------SQLYPRADIR-ATAFEE 193

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   +SN PFG     D    + +++  +                        
Sbjct: 194 ASLRTNSFDVAISNVPFGDYAPFDPKLNKGKYRIHDY-------------------FFIA 234

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            LE    GG    I         G     +S +R  L E   +   + LP D F     T
Sbjct: 235 ALERVRPGGFVVFI------TSRGTMDKRQSGLRELLAEGADLVGAIRLPNDAFKQNANT 288

Query: 402 NIATYLWILSNRKTEE 417
            + T +  L  R   E
Sbjct: 289 EVTTDIVFLRKRAPGE 304


>gi|83718564|ref|YP_443638.1| helicase domain-containing protein [Burkholderia thailandensis E264]
 gi|83652389|gb|ABC36452.1| helicase domain protein [Burkholderia thailandensis E264]
          Length = 1063

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 110  NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            N   +  +         LEK    Y   K  +    +       V+  +Y+   R    +
Sbjct: 790  NVLDVLHEHRLDKEADTLEK---FYDSVKLRAEGIDNAAGKQKIVV-ELYDKFFRNAFPK 845

Query: 170  VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVA 228
            ++E      TP +VV      +     A F ++ G     + DP  GTG F+T  +    
Sbjct: 846  MTERLGIVYTPVEVVDFIIHSVGHVLQAEFGQTLGSKGVHIIDPFVGTGTFVTRLLQSGL 905

Query: 229  DCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDL 286
                          H  E+    + +    +  +   +    +    + I    T     
Sbjct: 906  ITPEELPHKYKHEIHANEIVLLAYYIACINIEAVYHGM-VGGKYQPFEGICLADTFQLYE 964

Query: 287  FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                      SN            +  ++ +     R   G P  S G 
Sbjct: 965  KEDLVDAVQASN------------SARRKKQKKLDIRVIFGNPPYSAGQ 1001


>gi|312887841|ref|ZP_07747428.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
 gi|311299660|gb|EFQ76742.1| N-6 DNA methylase [Mucilaginibacter paludis DSM 18603]
          Length = 163

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE-RRGKVQLINATDL---------W 431
           ++   +  I+ LPT +F+   + T +       +E     KV   +             +
Sbjct: 1   MDKCNLHTILRLPTGIFYAAGVKTNVLFFERGTSETGNTKKVWFYDMRSNTHSFGKRTPF 60

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYRRIKVL-RPLRMSFI 489
           T +  +G             + + Y    N +  + + D R   + R ++  +   +   
Sbjct: 61  TRVAFDGFVHAYTGGIHIDDVFNTYDGNVNNEQRAIIQDSRWSCFTRKEIENKNDILDLG 120

Query: 490 LDKTGLARLE-ADITWRKLSPLHQSFWLDILKPMMQQIY 527
           L +     +E  D    +L+        +I   +++ I 
Sbjct: 121 LIQEKDYSIENQDNNPIELAKSALKEIEEIQTELLELIA 159


>gi|317057900|ref|YP_004106367.1| hypothetical protein Rumal_3270 [Ruminococcus albus 7]
 gi|315450169|gb|ADU23733.1| hypothetical protein Rumal_3270 [Ruminococcus albus 7]
          Length = 928

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 72/273 (26%), Gaps = 61/273 (22%)

Query: 83  TSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSG 142
              +++      +    ++  +A+F      +F D +    I R     +   +    +G
Sbjct: 241 IELFTVLDTKPEDRDPYMDDDLAAFPYVNGGLFADENIE--IPRFTDEIVDLLVNNASAG 298

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD------- 195
            +     +   +   ++E  +     E         T  + +H     L   +       
Sbjct: 299 FDW--SEISPTIFGAVFESTL---NPETRRSGGMHYTSIENIHKVIDPLFLDELKAEFNT 353

Query: 196 ------------DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------- 234
                                   T  DP CG+G FLT+    +    +           
Sbjct: 354 ICETKVDKTRKAKLEQFRDKLASLTFLDPACGSGNFLTETYISLRRLENEALQVIHGGQM 413

Query: 235 ----------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----------- 273
                         I   +G E+      V    + I   +     +             
Sbjct: 414 LIGGEGDFNPIKVGIGQFYGIEINDFAVTVAKTALWIAEAQMMHETEEIIQYTLDFLPLK 473

Query: 274 --KNIQQGSTLSKDLF---TGKRFHYCLSNPPF 301
              NI +G++L  D        +  Y + NPPF
Sbjct: 474 SYANITEGNSLRIDWESVVPKDKLSYIMGNPPF 506


>gi|270290937|ref|ZP_06197160.1| site-specific DNA-methyltransferase (adenine-specific) [Pediococcus
           acidilactici 7_4]
 gi|270280333|gb|EFA26168.1| site-specific DNA-methyltransferase (adenine-specific) [Pediococcus
           acidilactici 7_4]
          Length = 343

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 111/365 (30%), Gaps = 54/365 (14%)

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
           +  GS +D E   K+  Y  +  S    + L   N   +         DN   I  +   
Sbjct: 4   SEEGSQMDTEKIEKI--YRVFKES----AELLQKNLDVDFLDAFIETGDNL--ITGEIQV 55

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
                       L ++  +F+  E  P+      +    + ++ +        A    TP
Sbjct: 56  EDGKPDQATVQKLKQVYADFNWQEYEPE-----ELRKAIQLVMIQANRVERIQANHQFTP 110

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  L   ++                +++DP  GTG  L+  +N+  D           
Sbjct: 111 EAIGMLFNYII------ENLPLSQDQVSIFDPAVGTGNLLSTILNYFQDH------QVKF 158

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G + +    A+     +   L+ D               S D    K     +S+ P
Sbjct: 159 NGTGIDNDDTMLAIASMSFIFEHLKVDLYHQD----------SIDNLLVKNADIVVSDLP 208

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            G            E   G   R   G       S +  + +   ++    GG    + L
Sbjct: 209 VGY-------YPIDERTVGFETRSSEGH------SFVHHLLIEQSMKAVRPGGF--GVYL 253

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERR 419
             S LF         ++  +  +   ++AI+ LP+ +F        + IL    +  ++ 
Sbjct: 254 VPSNLFQTEEA---KKLLAFFHDKIYLQAILNLPSKMFKDAKAQKSILILQKVGQNAKQA 310

Query: 420 GKVQL 424
            +V L
Sbjct: 311 DQVLL 315


>gi|257783986|ref|YP_003179203.1| type II restriction enzyme methylase subunits- like protein
           [Atopobium parvulum DSM 20469]
 gi|257472493|gb|ACV50612.1| type II restriction enzyme methylase subunits- like protein
           [Atopobium parvulum DSM 20469]
          Length = 919

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 82/309 (26%), Gaps = 80/309 (25%)

Query: 79  SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---------IFED-----FDFSSTI 124
           +FYN     L  + +   R  L++   +   N             F       F   S I
Sbjct: 220 AFYNY----LKDVPANRIRTALKNLFHALDTNLSDRDPYDLEVKAFPYVNGGLFRDDSEI 275

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
                    + + +  S I      +   +   I+E  +     E         T  + +
Sbjct: 276 PNFTDETKSFLLDEVSSHINW--SQISPTIFGGIFESTL---NPETRRSGGMHYTSPENI 330

Query: 185 HLATALLLDPD-------------------DALFKESPGMIR--TLYDPTCGTGGFLTDA 223
           H     L   D                   +   K     I   T +DP CG+G FLT+ 
Sbjct: 331 HKVIDPLFLDDLKEELKSICTEEGTTPRKRENALKRFHEKICSLTFFDPACGSGNFLTET 390

Query: 224 MNHVADC--------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
              +                           K   +   +G E+      V    + I R
Sbjct: 391 YTCLRKLEDTVLNELRKGQTGFSLGDEEETGKRVSLNQFYGIEINDFAVTVAETALWISR 450

Query: 264 LESDPRR-------------DLSKNIQQGSTLSKDLFT---GKRFHYCLSNPPFGKKWEK 307
           L+++                    +I +G+ L  D  +       +Y + NPPF      
Sbjct: 451 LKANGETSMFYDAGGDDFPLSEKAHIVEGNALRIDWNSVLLASECNYIMGNPPFVGYSNH 510

Query: 308 DKDAVEKEH 316
             +  +   
Sbjct: 511 SAEQQKDRA 519


>gi|116873011|ref|YP_849792.1| hypothetical protein lwe1595 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741889|emb|CAK21013.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 332

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 114/350 (32%), Gaps = 55/350 (15%)

Query: 88  LSTLGSTNT--RNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
              L +T    +N LE SY+ +  +  + +F+          L     L K+ +++  IE
Sbjct: 10  FQVLDNTAIILQNELEISYLEAVYETGENLFQKEVLQK--EELSSEKQL-KLQESYESIE 66

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L   +  +     +   L++  G +        MTP  +  +   LL             
Sbjct: 67  LENFSNEEIRKG-LQLALLK--GMKHGIQVNHQMTPDSIGFIVAYLL------EKVIRKK 117

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
              ++ DP CGT   LT  +N +       K    +   G +++    ++      +   
Sbjct: 118 KNISILDPACGTANLLTTVINQL-----ELKGDVTVHASGVDVDDLLISLA-----LVGA 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
           +   ++           L +D             +S+ P G  +  D++A   E    E 
Sbjct: 168 DLQRQKMTL--------LHQDGLANLLVDPVDIVISDLPVGY-YPDDENAKTFELCREEG 218

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F            LF+       +     GG    ++  +          +    +++
Sbjct: 219 HSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFI 261

Query: 382 LENDLIEAIVALPTDLFFRTNIATYLWILSNRK-TEERRGKVQLINATDL 430
            +N  IE I+ LP  LF        + IL       +   +V L N + L
Sbjct: 262 KKNGHIEGIIKLPETLFKSEQARKSILILRKADVNVKPPKEVLLANLSSL 311


>gi|332882191|ref|ZP_08449821.1| hypothetical protein HMPREF9074_05619 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679814|gb|EGJ52781.1| hypothetical protein HMPREF9074_05619 [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 1037

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 82/307 (26%), Gaps = 70/307 (22%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  + + YE  +  F  +V +    + TP  VV+     L       F    G+  
Sbjct: 293 KDATKDPIVHFYEDFLEAFDPQVRKALGVWYTPLPVVNFMVRTLDTLLKEQFHLPQGIAD 352

Query: 208 T---------------------------LYDPTCGTGGFLTDAMNHVADCGSHH------ 234
           T                           + DP  GTG FL   + ++A            
Sbjct: 353 TSKIKVQTQQDNKVAGFDIEEKEYHRVQILDPATGTGTFLAQIIEYIAQQFKEQQGIWQN 412

Query: 235 --KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             +   +   +G EL   ++A+      ML+       +      I   ++L +      
Sbjct: 413 YVQEHLLPRLNGFELLMASYAIAHLKLDMLLS-QTQITQSTNRIQIYLTNSLEEPTPDRS 471

Query: 287 -----------------FTGKRFHYCLSNPPFGKKWEKDKDAV---EKEHKNGELGRFGP 326
                                     + NPP+          +    +++K     +   
Sbjct: 472 LPLARWLSDEANEANRIKRDTPVMCVIGNPPYNGSSTNKGSWIMNLMEDYKKEPNTKNKL 531

Query: 327 G--LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
               PK  +   +  +       +  NG G    +     L N         +R  LL+ 
Sbjct: 532 AERNPKWINDDYVKFIRFGAHF-IEKNGNGILIYINPHGFLDNPTFRG----MRYHLLKT 586

Query: 385 -DLIEAI 390
            D I  I
Sbjct: 587 FDSIHTI 593


>gi|313608580|gb|EFR84457.1| N-6 DNA methylase [Listeria monocytogenes FSL F2-208]
          Length = 227

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 40/233 (17%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++      +
Sbjct: 10  QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----L 59

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              +   ++           L +D             +S+ P G  +  D++A   E   
Sbjct: 60  VGADLQRQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCR 110

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            E   F            LF+       +     GG    ++  +          +    
Sbjct: 111 EEGHSF---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD---- 153

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430
           +++ +N  IE I+ LP  LF        + IL     + +   +V L N + L
Sbjct: 154 KFIKKNGHIEGIIKLPETLFKSEQARKSILILQKADVDVKPPKEVLLANLSSL 206


>gi|257094931|ref|YP_003168572.1| hypothetical protein CAP2UW1_3381 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047455|gb|ACV36643.1| conserved hypothetical protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1202

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 27/166 (16%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +  +FS  E        R + ++Y+ L         +      TP  V        L+
Sbjct: 169 GTLLHDFSDPEW-----STRFLGDLYQDL----SEAAQKKFALLQTPEFVEEFILDRTLN 219

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---------PHG 244
           P  A F         L DPTCG+G FL      + +C   ++                +G
Sbjct: 220 PAIAEFGYRE---VRLIDPTCGSGHFLLGGFARLLECWQKNEPGRNARDAVQQALNGIYG 276

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSK------NIQQGSTLSK 284
            +L P   A+    +LI  L++     L++      N+  G +L  
Sbjct: 277 VDLNPFAVAIARFRLLIAALKACAETSLAEAPNFRFNLAAGDSLLH 322


>gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC 49725]
 gi|227077180|gb|EEI15143.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC 49725]
          Length = 1668

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 70/285 (24%), Gaps = 40/285 (14%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                +  +    LEK    Y+        E+   +   +V+  +YE   R+   + +E  
Sbjct: 830  LSKANLDTETESLEK---FYESV-RVRASEVTSASGKQQVIKELYERFFRKAFKKQAEAL 885

Query: 175  EDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                TP ++V        +       K       ++ DP  GT  F+   +         
Sbjct: 886  GIVYTPVEIVDFILRAADEVSRKHFDKGLSDEGVSILDPFAGTSTFMVRLLQSGLIKPED 945

Query: 234  HKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                        E+              T+         R  E  P      NI    T 
Sbjct: 946  MARKYANELFATEIMLLAYYVSAVNIETTYNALREEAAQRNGEPTPDYVPFTNIALADTF 1005

Query: 283  --SKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
               +D                        +  + NPP+    +   D    +   G   R
Sbjct: 1006 QVHEDGDIPDLNIFRENNATIERQKNAPINVVIGNPPYSAGQKSANDLNANQKYPGLDKR 1065

Query: 324  FGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSS 363
                    S   + + L+   +             G  A V +  
Sbjct: 1066 IAETYAAKSTATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGG 1110


>gi|253570892|ref|ZP_04848300.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839841|gb|EES67924.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1000

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 52/216 (24%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP +V      +L          SP     + D  CG G F    
Sbjct: 60  EYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            NH+ +             +G +++ +  +V                    +I++     
Sbjct: 107 -NHLPNL---------HNAYGFDIDGKAVSVAR------------YLYPDAHIEKCD--L 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  +  +RF   + NPPF +K+   K + E             G+          LM + 
Sbjct: 143 RQYYPEQRFDIVIGNPPFNQKF-DYKLSQEYYMDKAYDVLNPAGI----------LMIIV 191

Query: 344 --NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             + ++       R A + +S+  F G+     S  
Sbjct: 192 PGSFMQSGFWEKTRIAGI-NSNFSFVGQTKLAPSAF 226


>gi|332708412|ref|ZP_08428389.1| hypothetical protein LYNGBM3L_19280 [Lyngbya majuscula 3L]
 gi|332352815|gb|EGJ32378.1| hypothetical protein LYNGBM3L_19280 [Lyngbya majuscula 3L]
          Length = 566

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 66/207 (31%), Gaps = 31/207 (14%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           F ++ SE      T R+VV     L     D      P     + +P+ G G FL   + 
Sbjct: 19  FAAKSSEERGAIFTRREVVEFILDLTGYTVD-----RPLPDYRILEPSIGEGDFLVPIVE 73

Query: 226 HVADCGSHHKIPP-------ILVPHGQELEPETHAVCVAGMLI----RRLESDPRRDLSK 274
            +      H                  E+ P++       +L       +  D    L  
Sbjct: 74  RLLTAYGAHDSNQVRLVDSLHNSIRAVEINPQSFENTRIKLLRLLQHHGINQDDAYQLLT 133

Query: 275 N-IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGPGLPK 330
           + + +G  L  DL     F + + NPP+  + E   D +  E++   N    R    +P 
Sbjct: 134 SWLIEGDFLLVDL--PGSFTHAVGNPPY-VRQELIPDILLAEYRARYNTIYDRADLYVP- 189

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAA 357
                  F+    + LE     G   A
Sbjct: 190 -------FIERALSSLEPGGVLGFICA 209


>gi|206890615|ref|YP_002248359.1| modification methylase TaqI [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742553|gb|ACI21610.1| modification methylase TaqI [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 469

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 107/312 (34%), Gaps = 44/312 (14%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + ++      + +    F TP  +V     L+      + K S     ++ +P CG   F
Sbjct: 27  QFILNSNLKNIKKDYGIFFTPEWLVDFMVNLI-----DIDKLSSKEDISILEPACGLAQF 81

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L           +H  +       G E+  E         +I  L S       + I++ 
Sbjct: 82  LFGIKR------NHSSLFERAKLIGIEINQE---------VINYLVSFDISSKIELIKED 126

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             L +       F   + NPP+G     +   ++ E +  +  +    L +   G     
Sbjct: 127 YLLWE---ANTSFDLIIGNPPYGIPSLSEHYTIKVEPEIKKKYK---TLYETWYGKYNVY 180

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                K        G+   ++ ++ +          ++R++L +N    AI+ L +D+F 
Sbjct: 181 GAFIEKSIKLLKAEGQLIFIVPATFMILDE----FKKLRKFLSQNGG-TAIIYLGSDVFK 235

Query: 400 RTNIATYLWILSNRKTEERRGKVQL------------INATDLWTSIRNEGKKRRIINDD 447
                + + IL   K++E   +V++            IN+      I  E    + ++  
Sbjct: 236 PEADVSCV-ILDFVKSKEFVNRVEILEYHRNKIKAVKINSNWQGEVITFETDYSKKLDHS 294

Query: 448 QRRQILDIYVSR 459
              ++ DIY  R
Sbjct: 295 CSHKLGDIYEIR 306


>gi|76802196|ref|YP_327204.1| restriction/modification enzyme [Natronomonas pharaonis DSM 2160]
 gi|76558061|emb|CAI49647.1| probable restriction/modification enzyme [Natronomonas pharaonis
           DSM 2160]
          Length = 1258

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ +      +   ++ ++Y+   + F  E  +   +F TP+ VV      +        
Sbjct: 384 FNVLRFDFGDIQGDLLGDLYQ---KYFDPETRKALGEFYTPQPVVDYIMDGVGYERGVS- 439

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
                    L DP CG+G FL +A+    +    ++  P    H Q+L
Sbjct: 440 ------NERLIDPACGSGTFLVEAVERYIEDVEQYEDDPDWKEHLQDL 481


>gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
            FRC41]
 gi|300685429|gb|ADK28351.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
            FRC41]
          Length = 1621

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 94/358 (26%), Gaps = 57/358 (15%)

Query: 111  AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
                 E     +    LEK    Y         E+   +   +V+  +YE   ++   + 
Sbjct: 795  MMDALEAAHLDTETESLEK---FYDSV-RVRASEVSSASGKQQVIKELYERFFQKAFKKQ 850

Query: 171  SEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTD------- 222
            ++      TP ++V        D     F          + DP  GT  F          
Sbjct: 851  ADSLGIVYTPVEIVDFILRAADDVSRRHFGRGLSDEGVCILDPFAGTSTFTVRLLQSGLI 910

Query: 223  -----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                 A  +  +      +          +   T+    A    R  E +P     KNI 
Sbjct: 911  RPEDLARKYANEIFVTEIMLLAYYVSAVNI-ETTYNALRAEAAQRGGEPEPEYVPFKNIA 969

Query: 278  QGSTL----------------SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKN 318
               T                 + D    ++    +  + NPP+    +   D        
Sbjct: 970  LADTFQIHEDGDIPDLNIFRENNDTIERQKAAPINVVIGNPPYSAGQKSANDLNANLKYP 1029

Query: 319  GELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
                R        S   + + L+   +             G  A V +   + +G  G G
Sbjct: 1030 SLDARIAETYAAKSTATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGGWI-DGNTGDG 1088

Query: 374  ESEIRRWLLENDLIEAIVALPTDL-----------FFRTNIATYLWILSNRKTEERRG 420
               +R  + E+     +  L  ++            F     T + I    K   R+G
Sbjct: 1089 ---VRLSMAEDFTDLYVFNLRGNMRNSDWRSEGGQIFGAGSQTTIAIFVAVKDSSRKG 1143


>gi|12837534|gb|AAK08958.1|AF306668_3 DNA methyltransferase BseMII [Geobacillus stearothermophilus]
          Length = 648

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 103/318 (32%), Gaps = 54/318 (16%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              F   EL  + +   ++  +YE  I + G    + +  F +P +VV+     L   + 
Sbjct: 69  IMQFPQAELI-NPLDYDLLGRVYEEHIHKNG--TRKKSGQFYSPIEVVNYMIDSLKLTEV 125

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEP 249
              K+   +        CGTG FL    + +     +                +G ++  
Sbjct: 126 KDIKKKKFIDI-----ACGTGIFLLKITDTLISIYKNENLTTKDIVELVCNNIYGLDINS 180

Query: 250 ETHAVCVAGML------IRRLESDPRRDLSKNIQQGSTLSK--DLFTGKR---------- 291
            +  +    ++      +     +    L  NI   +++    DL   +           
Sbjct: 181 TSCLITKINLINLFIIRLGSDFLNYTDQLKLNIFNTNSIENRTDLLNKEELEIVEIKNRI 240

Query: 292 ------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
                 F Y + NPP+      +   + KE K      +   +     G+    +    +
Sbjct: 241 GKYKDGFDYIVGNPPY-----LEAKRMPKELKEILKSNYPEMI----YGAFDLYIGFIAQ 291

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIA 404
                +  G  +++L +       A      IR++L +   I  IV L   D+F + ++ 
Sbjct: 292 CNRLVSDNGTVSLILPNKFTVAKYAIP----IRKYLNDKMTIIEIVDLSEMDIFHKADVY 347

Query: 405 TYLWILSNRKTEERRGKV 422
             + I     +  +  KV
Sbjct: 348 P-IIISYKNTSPTKEHKV 364


>gi|326336113|ref|ZP_08202285.1| type IIS restriction endonuclease [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691622|gb|EGD33589.1| type IIS restriction endonuclease [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 1151

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 76/255 (29%), Gaps = 61/255 (23%)

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN-----AKAIFEDFDFSS 122
           + E     A   F N   +    L      + +  ++  FS N     A   +    F  
Sbjct: 333 EEEVIKLFAPIPFLNGGLF--ECLDKDKGNDGVRYHLDGFSRNDRRSQANGHYTHRAFIP 390

Query: 123 TIARLEKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SEVSE 172
                +K   L+ +    +F+  E  P+ V       ++ N++E+L+  F         +
Sbjct: 391 NAVFFDKEKGLFPLLNRYHFTIEENSPNDVQVALDPELLGNVFENLLGAFNPETKESARK 450

Query: 173 GAEDFMTPRDVVHLATA------------LLLDPDDALFKESPGMIRTLY---------- 210
            +  F TP++VVH                 L   +     E  G + TL+          
Sbjct: 451 QSGSFYTPKEVVHYMVDESLKAYLKNHLPQLTYENLEELFEENGQLTTLWSTPLRTEVAQ 510

Query: 211 --------DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP CG+G F    ++ +               +               + + 
Sbjct: 511 YLRKVKILDPACGSGAFPMGILSRMVQLLEKLNTNEETSLY--------------DLKLH 556

Query: 263 RLESDPRRDLSKNIQ 277
            +E+       +NI 
Sbjct: 557 LIENCIYGVDIQNIA 571


>gi|288937410|ref|YP_003441469.1| N-6 DNA methylase [Klebsiella variicola At-22]
 gi|288892119|gb|ADC60437.1| N-6 DNA methylase [Klebsiella variicola At-22]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 41/244 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +      +    + TP ++  +     L                + +P+ G  GFL  
Sbjct: 1   MNKHSRTQKKTLGAYYTPLNLSKVLCEWALR----------KPNDYILEPSFGGCGFLEA 50

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           ++  +   G            G +++P              L         KNI+    L
Sbjct: 51  SIERLKALGCKDTESQ---LFGVDIDPAAF---------HFLSEKIGNY--KNIKNQ-FL 95

Query: 283 SKD-------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            KD        F    F   L NPP+       +       +  +   F       +   
Sbjct: 96  YKDFLEVMPNNFKTSGFDVVLGNPPYVSMHNMPEKLKINCFELLKKSYFSDDTIGKNASL 155

Query: 336 ML-FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
              FL+H  + L+     GGR+A VL SS L    A +  +   +       +  +V L 
Sbjct: 156 WAFFLLHSLSFLKK----GGRSAWVLPSSLLHADYANAILNIFSQHF----HLVKVVKLH 207

Query: 395 TDLF 398
              F
Sbjct: 208 ERFF 211


>gi|172039720|ref|YP_001799434.1| hypothetical protein cur_0040 [Corynebacterium urealyticum DSM
           7109]
 gi|171851024|emb|CAQ04000.1| hypothetical protein cu0040 [Corynebacterium urealyticum DSM 7109]
          Length = 156

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
           M+++ E L+ R  SE  + A  F  PRD   L   +LL  D   F       RT+Y P  
Sbjct: 1   MAHLSEDLMYRSSSENWQVAVGFDIPRDTSRLMVDVLLSCDGHGFYGQVPA-RTVYSPAA 59

Query: 215 GTGGFLTDAMNHVADCGSHHKI 236
           GTGG L  A   + D      +
Sbjct: 60  GTGGILLVAKRAMEDLNPKIGV 81


>gi|80159697|ref|YP_398441.1| putative type I site-specific deoxyribonuclease, M subunit
           [Clostridium phage c-st]
 gi|78675287|dbj|BAE47709.1| putative type I site-specific deoxyribonuclease, M subunit
           [Clostridium phage c-st]
          Length = 560

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 72/265 (27%), Gaps = 49/265 (18%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E++++++     +    F TP  V +    LL                 + D + G G  
Sbjct: 37  ENILKQYVGLS-KDNNSFFTPIPVCNFICNLLDI----------KENMKVADLSAGIGNM 85

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                  +       K       +  +              +   ++       K     
Sbjct: 86  CIP----LIKEYGQLKDNITFYMYELDENNS----------LAGAKAWEDYKQVKYHGNC 131

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            TL+ D+     +   + NPPF        +    + K  +                  +
Sbjct: 132 DTLNHDI-PENYYDCIIGNPPFVGSIPYMCEWNNNKGKIKKN---------------QIV 175

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
               +K        G  A+VL     F G    G  ++R +L E   +   + L  D F 
Sbjct: 176 DAFIDKSFKVCKENGYVALVLPKGFCFKGN---GTGKLREYLKERYSLLFCMELDQDTFA 232

Query: 400 R-----TNIATYLWILSNRKTEERR 419
                 T + T L I    K  +  
Sbjct: 233 NAGITGTGVGTVLCIFQKCKQTKPT 257


>gi|186687128|ref|YP_001870271.1| putative type II DNA modification enzyme [Nostoc punctiforme PCC
           73102]
 gi|186469431|gb|ACC85230.1| putative type II DNA modification enzyme [Nostoc punctiforme PCC
           73102]
          Length = 1291

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 65/245 (26%), Gaps = 60/245 (24%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLI------------RRFGSEVS---EGAEDF 177
           L           ++ + +    + ++YE L+              F        +    +
Sbjct: 397 LSLYLDKAQLRRVNYEYLDVEELGSVYESLLDFHPQVVQKQGKYEFALVFGSDRKTTGSY 456

Query: 178 MTPRDVVHLATALLLDPD-----------------DALFKESPGMIR---TLYDPTCGTG 217
            TP  +V       L+P                      K +         + DP CG+G
Sbjct: 457 YTPPQLVQQLIKTALEPVIEDKLAQVRSQASTPSSPDELKHNLEKGLLSLKICDPACGSG 516

Query: 218 GFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            FL  A   V                       +       +G +L P    +C   + I
Sbjct: 517 HFLLAAARRVGKELAKVRTGEAEPGSEPLKFAMRDVIQNCIYGVDLNPLAVDLCKVALWI 576

Query: 262 RRLESD-PRRDLSKNIQQGSTL--------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                  P   L   I+ G++L          +    + +     +        K ++  
Sbjct: 577 EGFPGKLPLSFLDHRIKCGNSLVGVSDINCLDEGIPDEAYKAVTGDDKKLATQLKKRNKK 636

Query: 313 EKEHK 317
           E+E+K
Sbjct: 637 ERENK 641


>gi|212638328|ref|YP_002314848.1| adenine-specific DNA methylase [Anoxybacillus flavithermus WK1]
 gi|212559808|gb|ACJ32863.1| Adenine-specific DNA methylase [Anoxybacillus flavithermus WK1]
          Length = 324

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 80/243 (32%), Gaps = 38/243 (15%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +G ++++ P   +      +                +L DP  GTG  +T  +N +    
Sbjct: 79  KGMKEYVQPHHQMTPDAVAVFIGYLVDEFTKTYFSLSLLDPAIGTGNLMTAVLNQL---- 134

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +  +G + +     +      +++ +          +    +L K LF  ++
Sbjct: 135 ----TNKKVKSYGADADDLLLKLAYVNANLQQHDI--------QLFHQDSL-KPLFI-EQ 180

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               + + P G   + +     + H               S    LF+       +    
Sbjct: 181 VDVVVCDLPIGYYPDDENAKSFRLHATSGH----------SYAHYLFIEQSIRYTKE--- 227

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRTNIATYLWIL 410
            GG   +V+ +  LF       ES+    L+ E   I+ ++ LP  +F     A  ++IL
Sbjct: 228 -GGYVFLVIPN-TLFTSD----ESKQLHALIKEETFIQGLLQLPLSMFKNEKAAKSIFIL 281

Query: 411 SNR 413
             +
Sbjct: 282 QKK 284


>gi|291066989|gb|ADD74105.1| type I restriction-modification system methyltransferase subunit
           [Rickettsia felis]
          Length = 224

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 45/169 (26%)

Query: 219 FLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            L  +  H+ D        + +       +G E+    + +    M++         D  
Sbjct: 1   MLITSYKHIYDNLSLRTPENIQRLKKQTVYGGEITK-MYRIAKMNMILAG-------DGH 52

Query: 274 KNIQQGSTL-----------SKDLFTGK-----RFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            NI + ++             KD F  K     ++   +SN PFG+K + +   +     
Sbjct: 53  SNIVRQNSYGTPDTIKQIDVIKDGFVTKENIKIKYDVVISNMPFGRKMKTEHAGL----- 107

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
            G   R            +  ++H  N L    N   R  +++    LF
Sbjct: 108 YGFNTR---------SAEITGVLHCLNSLNNNENA--RLGLIVPEGILF 145


>gi|261885385|ref|ZP_06009424.1| restriction and modification enzyme CjeI [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 140

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 117 DFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           DF F     +    + A +L  I K F  + L      ++++ N++E  +++   +    
Sbjct: 9   DFSFIEVHNKTLFEQNAQVLKAIIKLFENLRLT-QNKTNQLLGNLFELFLQKGMKQ---D 64

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
              F TP  +       L  P   LF +       + D  CG G FL    N
Sbjct: 65  EGQFFTPIQICEFIVHSL--PLKMLFDKDIPK---VIDYACGAGHFLNTYAN 111


>gi|108763664|ref|YP_630054.1| putative restriction/modification enzyme [Myxococcus xanthus DK 1622]
 gi|108467544|gb|ABF92729.1| putative restriction/modification enzyme [Myxococcus xanthus DK 1622]
          Length = 1656

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/382 (13%), Positives = 96/382 (25%), Gaps = 57/382 (14%)

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS----- 156
            +   S S   + + +         RL+K        + F           +         
Sbjct: 815  AAENSMSRAMQGVLDAL----QEHRLDKE---ASTLEKFYASVKMRAEGVESAQGKQKIV 867

Query: 157  -NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTC 214
              +Y+   R    ++SE      TP ++V      +     A F ++ G     + DP  
Sbjct: 868  VELYDKFFRNAFPKMSERLGIVYTPVEIVDFILKSVDHLLRAEFGQTLGSEGVHVIDPFT 927

Query: 215  GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDL 272
            GTG F+T  +                  H  E+    + +    +      L        
Sbjct: 928  GTGTFITRLLQSGLIAEEDLPRKYAKEIHANEIALLAYYIAAINIEAAYHGL-VGGMYVP 986

Query: 273  SKNIQQGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
             + I    T       D                        + NPP+ +  E + D    
Sbjct: 987  FEGICLTDTFQLYEKDDLISRVLVDNSARRRRQKKLDIRVVVGNPPYSEGQESENDNNAN 1046

Query: 315  EHKNGELGRFGPGLPKISDGSML---FLMHLANKLELPPNGGGR-AAIVLSSSPLFNGRA 370
                    R        SD  +    +  ++          G R     ++ +       
Sbjct: 1047 LAYPLLDARIAATYVARSDAKLAKNNYNSYIRAIRWASDRVGNRGIVGFVTGAGFVESNT 1106

Query: 371  GSGESEIRRWLLENDLIEAIVAL--------------PTDLF-FRTNIATYLWILSNRKT 415
              G   +RR L E      I  L                ++F   +     +  L     
Sbjct: 1107 TDG---LRRSLKEEFSSIYIFHLRGNARSSGERRRMEGGNVFDMGSRAPVAISFLVKNPD 1163

Query: 416  EERRGKVQLINATDLWTSIRNE 437
             +  G +Q  +  D  +  +  
Sbjct: 1164 AKEHGSIQFYDVGDYLSRDQKL 1185


>gi|260871137|ref|YP_003237917.1| defense against restriction protein [Escherichia coli O111:H- str.
           11128]
 gi|257767716|dbj|BAI39209.1| defense against restriction protein [Escherichia coli O111:H- str.
           11128]
          Length = 2255

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 119/384 (30%), Gaps = 74/384 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 89  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAI-STPNDSFDH 176

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++ + L ++         ++               E      +   +
Sbjct: 273 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319

Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             G+R RI+V    ++     K   + R E+ I W  L     S   D++     ++   
Sbjct: 320 EKGFRGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMRLING 379

Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553
            W +      I+++  K LK+ A+
Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403


>gi|331674465|ref|ZP_08375225.1| conserved hypothetical protein [Escherichia coli TA280]
 gi|331068559|gb|EGI39954.1| conserved hypothetical protein [Escherichia coli TA280]
          Length = 264

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 9/142 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L         +    F TP  V  +   + L    ALF+  P +  TL +P
Sbjct: 121 DFLGSVFMQL-----ELGDKYRSQFFTPWSVASMMAQMQLGNVKALFENKPFI--TLSEP 173

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G        +     +++P    +    + +  +  +     
Sbjct: 174 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 231

Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294
           S   ++   L         + Y
Sbjct: 232 SLCNERRRVLLTPGHYLGNWSY 253


>gi|270602099|ref|ZP_06221566.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
 gi|270318247|gb|EFA29439.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
          Length = 224

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 50/175 (28%), Gaps = 20/175 (11%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---LVPHGQELEPETHAVCVAGM 259
                   D  CG G FLT+  + +                  +G E E     V     
Sbjct: 6   TPARMKSIDYACGAGHFLTEYASQIKPLLKDSGRNLSEFYQKIYGIEKEYRLSKVAKVSA 65

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
            +   +         NI     L+++           F   ++NPP+    +     +  
Sbjct: 66  FMYGQDEM-------NIIYADALAQNQEQGKALQDGSFSLLVANPPYSV--KGFLSTISD 116

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
           E K            +  +    F      K +   +  G A IVL SS L NG 
Sbjct: 117 EDKAKFTLYENIDNEETFNSIETF---FIEKAKQLLHAKGIAVIVLPSSILTNGN 168


>gi|57506015|ref|ZP_00371938.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Campylobacter
            upsaliensis RM3195]
 gi|57015623|gb|EAL52414.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Campylobacter
            upsaliensis RM3195]
          Length = 1321

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 47/298 (15%)

Query: 117  DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
             F     +  L+K    Y   +  +      +   +  + ++YE+L +    +  E    
Sbjct: 791  KFGLQDELKNLKK---FYANVQKSAEYAQSDEAKQNL-IKSLYENLFKAAFKKTQEKLGI 846

Query: 177  FMTPRDVVHLAT-ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP ++V     +L         K        +YDP  GTG F+T  +        + +
Sbjct: 847  VYTPIELVDFIIYSLEFVLKKHFDKSLSDKGVNIYDPFTGTGTFITRLIQSGL-LDKNLE 905

Query: 236  IPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLF------ 287
                      E+    + +    +  ++ +   +      + I   + L  D F      
Sbjct: 906  HKYKNELWANEITLLGYYIAQINITAIMHQRLKELDPKKDEFILLDNLLFTDTFNTYTQD 965

Query: 288  ---------------------------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
                                           F   + NPP+    +   D  +  +    
Sbjct: 966  FKGFKGQGELNYKNAYFAKNYAKINELKKAEFKVIMGNPPYSNGQKDGNDENKNTNYPAL 1025

Query: 321  LGRFGPGLPKISDGSMLFLMHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSG 373
              R        ++ ++   ++   K+            G    V + S +  G + SG
Sbjct: 1026 EARIKESYIARANTTLTRSLYDTYKMAIRYASDRIEKDGVIGFVTNGSFI-EGNSDSG 1082


>gi|317178970|dbj|BAJ56758.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30]
          Length = 1611

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/371 (14%), Positives = 104/371 (28%), Gaps = 48/371 (12%)

Query: 43   RLECALEPTRS---AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
            RL+   E          +       SNI  +  + +       TS      +      +N
Sbjct: 755  RLKDIFEKNPEIFHGFLDSLRGNIHSNIKEDEALDM------ITSHIITKPIFDAIFGDN 808

Query: 100  LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +++ I+   D                 L+    LY+  K    +          ++ N+Y
Sbjct: 809  IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 864

Query: 160  EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218
                +    + SE      TP +VV                 +      T++DP  GTG 
Sbjct: 865  NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTGTGS 924

Query: 219  FLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            F+   ++   +  S    K   +      ++    + + +  +       D      KNI
Sbjct: 925  FIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYITLINITQAAQSRDGSLKNFKNI 984

Query: 277  QQGSTLS-----------------------KDLFTGKRFHYCLSNPPF--GKKWEKDKDA 311
                +L                        KD    K     + NPP+  G K + D + 
Sbjct: 985  ALTDSLDIYEEKNDKGVLPIFEDLKENKEIKDTLADKNIRVIIGNPPYSAGAKSQNDNNQ 1044

Query: 312  VEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                 K  +      G     K+   +   L+             G    V++   +   
Sbjct: 1045 NLSHPKLEKKVYEKYGKNSTAKVGATTRDTLIQSIYMASDLLKDRGVLGFVVNGGFI--- 1101

Query: 369  RAGSGESEIRR 379
             + SG+   R+
Sbjct: 1102 DSKSGDG-FRK 1111


>gi|308181041|ref|YP_003925169.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308046532|gb|ADN99075.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 316

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 40/255 (15%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                MTP  +  L   L+                ++ D   GTG  LT  +N +     
Sbjct: 74  DPNHQMTPDSIGLLTAYLIAK------LVGSTTDLSILDIAVGTGNLLTTVINQLQT--- 124

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               P  +  +G + +    A+    M ++R   +     +       +L        + 
Sbjct: 125 --DRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVELFHQDA-----IDSLVMP-----KT 172

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + + P G     D+               G      +  S +  + +   +     G
Sbjct: 173 TVVIGDLPVGYYPLDDRVQ-------------GFQTKATNGHSYIHHLMMEQAMAHLLPG 219

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G    + L  + +F  +   G   + +W+     ++ ++ LPT+LF        + +L  
Sbjct: 220 G--WGVFLVPTTIFQSQESQG---LLKWMSTAAYLQGLLNLPTNLFLDEKSRKSIVVLQK 274

Query: 413 R-KTEERRGKVQLIN 426
             +   + GKV L +
Sbjct: 275 HGQRAHQAGKVLLGD 289


>gi|240948759|ref|ZP_04753131.1| hypothetical protein AM305_07728 [Actinobacillus minor NM305]
 gi|240296975|gb|EER47553.1| hypothetical protein AM305_07728 [Actinobacillus minor NM305]
          Length = 217

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 53/166 (31%), Gaps = 17/166 (10%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSE-----------VSEGAEDFMTPRDVVHLAT 188
                   +      M  I  +L+ +   +            ++      TP     +  
Sbjct: 46  IKSRYTDDEMYQFHQMGQILLNLLEQKPQDVLGQCYMKLQIANKQRGQCFTPISTGQVMA 105

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
            +L+ P +     +     TL +PTCG+G  +      +   G +      L+   Q+++
Sbjct: 106 NMLIAPSE----INEKGYFTLNEPTCGSGALIISFCETLKSQGYN--PQQQLLVIAQDID 159

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            ++  +C   + +  + +  +           T    L+  +R  Y
Sbjct: 160 LKSVQMCYVQLSLLGISAIIQHANPIANNVIDTYYTPLYLLQRNRY 205


>gi|300768056|ref|ZP_07077962.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300494405|gb|EFK29567.1| adenine-specific methyltransferase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 349

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 40/255 (15%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                MTP  +  L   L+                ++ D   GTG  LT  +N +     
Sbjct: 107 DPNHQMTPDSIGLLTAYLIAK------LVGSTTDLSILDIAVGTGNLLTTVINQLQT--- 157

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               P  +  +G + +    A+    M ++R   +     +       +L        + 
Sbjct: 158 --DRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVELFHQDA-----IDSLVMP-----KT 205

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + + P G     D+               G      +  S +  + +   +     G
Sbjct: 206 TVVIGDLPVGYYPLDDRVQ-------------GFQTKATNGHSYIHHLMMEQAMAHLLPG 252

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G    + L  + +F  +   G   + +W+     ++ ++ LPT+LF        + +L  
Sbjct: 253 G--WGVFLVPTTIFQSQESQG---LLKWMSTAAYLQGLLNLPTNLFLDEKSRKSIVVLQK 307

Query: 413 R-KTEERRGKVQLIN 426
             +   + GKV L +
Sbjct: 308 HGQRAHQAGKVLLGD 322


>gi|54298227|ref|YP_124596.1| hypothetical protein lpp2285 [Legionella pneumophila str. Paris]
 gi|53752012|emb|CAH13438.1| hypothetical protein lpp2285 [Legionella pneumophila str. Paris]
          Length = 287

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168
            + F   +   +LE   LL  +        F+    HPD +        Y  +I++    
Sbjct: 12  LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67

Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
                  G  +F +           PR        L L+              ++ D   
Sbjct: 68  LPIAYITGQREFWSLSLKVTPNVLIPRHETERLVELALELIPD------KENVSVLDLGT 121

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G                 K  P+      +   E   +         L          
Sbjct: 122 GSGAIALAL----------AKERPLWHIDACDFSKEALELARYNAKTLGLN--------- 162

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           NI    +   +    K++H  +SNPP+  +           H      RF P    +S  
Sbjct: 163 NINFYHSCWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKQGDVRFEPTSALVSSQ 214

Query: 335 S-MLFLMHLANKLELPPNGGG 354
             +  L ++           G
Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235


>gi|307564603|ref|ZP_07627140.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
 gi|307346688|gb|EFN91988.1| N-6 DNA Methylase [Prevotella amnii CRIS 21A-A]
          Length = 1534

 Score = 48.4 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/391 (12%), Positives = 109/391 (27%), Gaps = 51/391 (13%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G     A       G    +          +   
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMG---VFAETFARQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + +R    +   ++                  ++    SN PFG     D  
Sbjct: 166 LHPHGKGNVFVRNEPFEAIGEIED--------------KDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYTRGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    +  Q +
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEGIEQQFV 315

Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR-------- 476
               +      +   K   +     + I    ++ E    +       + YR        
Sbjct: 316 ETLSVPKEEGSSVVFKHNSLFAGDWKDIAHRIIATERTMGTDPYGKPAWEYRFDGSIGDM 375

Query: 477 --RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
              I+    L +    D+             +     +      +   + +  P    E+
Sbjct: 376 AESIRTQLSLEVEQRFDRKLYETGIPMTEEERQKEAEKQLHKLGITVDLPKEDPKTDKEA 435

Query: 535 FVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
               ++  +  +    K   +      +   
Sbjct: 436 ENAYNLMPDSIRKQLPKLYSTEKELIGDKIA 466


>gi|170078909|ref|YP_001735547.1| DNA modification methyltransferase [Synechococcus sp. PCC 7002]
 gi|169886578|gb|ACB00292.1| DNA modification methyltransferase [Synechococcus sp. PCC 7002]
          Length = 914

 Score = 48.0 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 70/253 (27%), Gaps = 57/253 (22%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP----RDVVH---------LATALLLDPDDALFKE 201
             NI+E  I    ++         T     R +V                   D    K+
Sbjct: 301 FGNIFESAID---ADERHARGIHYTSEKDIRQIVRPTIADYWEGKIDEATTYEDLEKLKQ 357

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADC---------------------GSHHKIPPIL 240
                  + DP CG+G FL  A   +                             I   L
Sbjct: 358 ELRE-YRVLDPACGSGNFLYVAYQELKRLERVLLNKIYERRKRFQGEVLQQEEIGIVTPL 416

Query: 241 VPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSK---------NIQQGSTLSKDLFTGK 290
              G +  P    +    M+I R++  D                NI     L  D     
Sbjct: 417 QFFGMDTNPFAVQLARVTMMIARKIAIDKFGLTEPALPLDSLDQNIVCQDALFNDW---P 473

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +    + NPPF     + +  +  ++      +F      + D  + F ++         
Sbjct: 474 KADAIIGNPPF-LGGSRVRLELGDKYVERIFEKFSD----VKDK-VDFCVYWFRLAHENL 527

Query: 351 NGGGRAAIVLSSS 363
           N  GRA +V ++S
Sbjct: 528 NKTGRAGLVGTNS 540


>gi|238854822|ref|ZP_04645152.1| adenine-specific DNA methylase [Lactobacillus jensenii 269-3]
 gi|260664110|ref|ZP_05864963.1| adenine-specific DNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|282933900|ref|ZP_06339248.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
 gi|238832612|gb|EEQ24919.1| adenine-specific DNA methylase [Lactobacillus jensenii 269-3]
 gi|260561996|gb|EEX27965.1| adenine-specific DNA methylase [Lactobacillus jensenii SJ-7A-US]
 gi|281301989|gb|EFA94243.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
          Length = 332

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 87/289 (30%), Gaps = 40/289 (13%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++  L  +   E         TP  V+    A++ D      K       ++ DP  GTG
Sbjct: 77  VFTLLTLKAMKEDGRNYSQMPTP-PVLATVVAMVWD------KLITKTELSVVDPAIGTG 129

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
             L      +      H         G + +     +   G  +   + D          
Sbjct: 130 SLL---YTVIDQLVQSHHSQNQYRLAGIDNDESMLDLADVGAHLNNYKIDL--------Y 178

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
              +L    +  ++    +S+ P G         ++K  KN     F     +  +G  L
Sbjct: 179 CQDSLEN--WLIEKPDVIVSDLPVG------YYPIDKNAKN-----FA---TQAKEGHSL 222

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
               L  +        G A +++ +S L  G     E     WL +   ++A+V LP DL
Sbjct: 223 AHELLVEQTIKNLAPAGYAFLLVPNSLL--GGKLGAEFMP--WLAKKVYLQAVVQLPNDL 278

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444
           F        L +  N     +   V L     L       +  +K    
Sbjct: 279 FQNPLNQKSLLVFQNHGENAQSRDVLLAKLGSLKEEKSLVDFNQKLNEW 327


>gi|83268881|gb|ABB99933.1| hypothetical protein pCT0012 [Listeria monocytogenes]
          Length = 1557

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 77/294 (26%), Gaps = 41/294 (13%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             E   F+     LE    LY+         +       +++  +Y+   +      +E  
Sbjct: 800  LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 855

Query: 175  EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232
                TP +VV      + D     F K        + DP  GTG F+   + ++ +    
Sbjct: 856  GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDA 915

Query: 233  ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQ----- 278
                        +   H  E+   ++ +    +     E +   +     + I       
Sbjct: 916  GEISLADITRKFMNELHANEIVLLSYYIAAINIEATFDEINGEEEGYVPFEGIVLTDTFE 975

Query: 279  ----GSTLSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR- 323
                  TL  D F             +    + NPP+        D  +         R 
Sbjct: 976  STETEDTLDDDYFGTNDERLKRQQDVQITAIIGNPPYSVGQSNANDDNKNVQYQKLNNRI 1035

Query: 324  -----FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
                          +    F+            G G    V ++S + +  A  
Sbjct: 1036 SETYALHSSATNKRNLYDDFIKAF-RWTSDRLKGNGIIGFVSNASFINSQSADG 1088


>gi|161522621|ref|YP_001585550.1| hypothetical protein Bmul_5588 [Burkholderia multivorans ATCC
           17616]
 gi|189348517|ref|YP_001941713.1| hypothetical protein BMULJ_05916 [Burkholderia multivorans ATCC
           17616]
 gi|160346174|gb|ABX19258.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 gi|189338655|dbj|BAG47723.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
          Length = 333

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+   Y  +        ++GA  F TP  V  L   + +       +        + +P
Sbjct: 114 DVLGETYMTM-----GIGNDGAGQFFTPYSVSRLMAGIAIGDRSEAVERD--GFMRMQEP 166

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV 241
            CG GG +    + +   G +++      
Sbjct: 167 ACGAGGMVIATADALLSIGQNYQQTLHAT 195


>gi|301311336|ref|ZP_07217263.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
 gi|300830422|gb|EFK61065.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
          Length = 255

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        + A         + + DP
Sbjct: 85  DAFGDLFMAISSKIGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + V  ML+     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTVCNMLVHGCIGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF 292
              +    +L  + F     
Sbjct: 180 ---VIHHDSLFPENFMDGWM 196


>gi|226322845|ref|ZP_03798363.1| hypothetical protein COPCOM_00617 [Coprococcus comes ATCC 27758]
 gi|225208826|gb|EEG91180.1| hypothetical protein COPCOM_00617 [Coprococcus comes ATCC 27758]
          Length = 1023

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/374 (13%), Positives = 106/374 (28%), Gaps = 72/374 (19%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
           + V E+  +    N   E    +   +F+ T +     LG   ++    + I +      
Sbjct: 72  AEVSEEKESLEEINGIAEPIQAM---NFHITDD----ELGQGTSKEKFRANIMAI----- 119

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFGSE 169
            + +  +  +  A  ++  +L +        +   +T        +    +     + + 
Sbjct: 120 QLLKKCEEENRNATPKEQEILSRYVGWGGLADAFDETKAAWETEYLELKTVLTPEEYAAA 179

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +       T   V+     +         +    +   + +P+ G G F      ++  
Sbjct: 180 RASTLNAHYTQPIVIESMYQV--------LENLGFIKGNILEPSMGVGNFFGMLPENL-- 229

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +G EL+  +  +                    NI Q     K  +  
Sbjct: 230 --------NQSKLYGVELDSISGRIGK------------LLYPDANI-QIKGFEKTDYPN 268

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   + N PFG     D+          +                 FL    ++L   
Sbjct: 269 DFFDVAIGNVPFGAYKVNDRQYDRYNFMIHDY----------------FLAKTIDQLRP- 311

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLW 408
              GG AA++ +   +          E+R++L E   +   + LP   F           
Sbjct: 312 ---GGVAALITTKGTM-----DKASPEVRKYLAERADLLGAIRLPNTAFKANAGTEVSAD 363

Query: 409 ILSNRKTEERRGKV 422
           IL  +K E    ++
Sbjct: 364 ILFFQKRESLTKEM 377


>gi|77406070|ref|ZP_00783145.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
 gi|77175303|gb|EAO78097.1| reticulocyte binding protein [Streptococcus agalactiae H36B]
          Length = 1355

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           + +         E+          +E+  ++    FY      L+       R+ +E+ I
Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163
            +       + ++ +     A   +  LL K    + G+        +   S   E L  
Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664

Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
               + +          + T   ++               +        + DP+ GTG F
Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H+ +             +G EL+  T A+                +    I+  
Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T+    F    F   +SN PF              +      R+        D   +  
Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K     + GG+ AI+        G        I + + E       V LP   F 
Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848

Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
               T++ T +        +         + +  +     
Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888


>gi|253567590|ref|ZP_04845001.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841663|gb|EES69743.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1000

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 49/165 (29%), Gaps = 39/165 (23%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP +V      +L          SP     + D  CG G F    
Sbjct: 60  EYAEAKKEYEMGQFFTPHEVCRDIVDML----------SPASSEMILDMCCGMGNFFNHL 109

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            NH                +G +++ +  AV                    +I++     
Sbjct: 110 PNH-------------HNTYGFDIDGKAVAVAR------------YLYPDAHIEKCD--I 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           +  +  +RF   + NPPF  K+   + + E   +         G+
Sbjct: 143 RQYYPEQRFDIIIGNPPFNLKF-DYRLSQEYYMEKAYDVLNPAGI 186


>gi|319788873|ref|YP_004090188.1| N-6 DNA methylase [Ruminococcus albus 7]
 gi|315450740|gb|ADU24302.1| N-6 DNA methylase [Ruminococcus albus 7]
          Length = 2936

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 73/252 (28%), Gaps = 58/252 (23%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +        F TP +V         D      ++       + +P+ G G F     
Sbjct: 1395 EYKAARESTLTSFYTPPEVT--------DGVFQALRQLGFEGGNILEPSMGVGNFFAKMP 1446

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            + + D             +G EL+  +  +         L  + R  ++          K
Sbjct: 1447 DDIRDSSK---------LYGVELDSISGRIAQL------LNPEDRIQITG-------FEK 1484

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              F    F   + N PFG  +     A +K                       F +   +
Sbjct: 1485 TRFNNNSFDVVIGNVPFG-DYRVSDKAYDKLGLKIHDY---------------FAVKSID 1528

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K++     GG  AIV S    F     +   + RR L E   +   V LP + F     T
Sbjct: 1529 KVKP----GGVVAIVTSK---FTMDKIN--DKARRHLAERCDLLGAVRLPNNAFKKNAGT 1579

Query: 402  NIATYLWILSNR 413
               T +     R
Sbjct: 1580 ETTTDILFFQKR 1591


>gi|217032436|ref|ZP_03437930.1| hypothetical protein HPB128_164g36 [Helicobacter pylori B128]
 gi|216945915|gb|EEC24533.1| hypothetical protein HPB128_164g36 [Helicobacter pylori B128]
          Length = 551

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 71/232 (30%), Gaps = 28/232 (12%)

Query: 132 LLYKICKNFSGIELH----PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           LL +I  + + +++               + YE  +  +  ++ E    + TP  VV   
Sbjct: 9   LLNEILSSINHVDMDSILKDLNDDKDPYLHFYETFLSAYDPKLREKKGVYYTPDSVVKFI 68

Query: 188 TALLLDPDDALFKESP--------GMIRTLYDPTCGTGGFLTDAMNHVADCGS------- 232
              L       FK++P             L D   GTG FL +A     +          
Sbjct: 69  INALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGIS 128

Query: 233 ---HHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRRDLSKNIQQGSTLSKDL 286
                    +   +G E     +A+    +        +   + + +  I   +TL +  
Sbjct: 129 TKEEKYQNLLKQFYGFEYLIAPYAIAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQP- 187

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
              +   Y   +P F K+    ++  + E      G         ++G   +
Sbjct: 188 --SEIVAYRGLSPIFEKELSNAQEIKKDEKILIITGNPPYSGASSNEGLFEW 237


>gi|253729882|ref|ZP_04864047.1| superfamily II DNA/RNA helicase [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
 gi|253726329|gb|EES95058.1| superfamily II DNA/RNA helicase [Staphylococcus aureus subsp. aureus
            USA300_TCH959]
          Length = 1572

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 15/195 (7%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             E   F+     L     LY+        ++       +++  +Y+   +   +  ++  
Sbjct: 813  LEKAGFAKEQENLAP---LYESV-KMRAEDVEKAEDKQKIIITLYDKFFKTAFNSTTKKL 868

Query: 175  EDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                TP +VV      +    +  F ++       + DP  GTG F+   + ++ +    
Sbjct: 869  GIVFTPVEVVDFIVKSVDLTLERHFGKNLASESVHILDPFTGTGTFMVRTLEYLKEQMKE 928

Query: 234  HK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTLS 283
             +              H  E+   ++ +    +     + +         + I    T  
Sbjct: 929  GEISLADITRKFTQELHANEIVLLSYYIAAINIEATFDDINGNEQGYTPFEGIVLTDTFE 988

Query: 284  KDLFTGKRFHYCLSN 298
              +       Y + N
Sbjct: 989  TTVHEYSIDEYFIGN 1003


>gi|319945387|ref|ZP_08019648.1| type II DNA modification enzyme [Lautropia mirabilis ATCC 51599]
 gi|319741380|gb|EFV93806.1| type II DNA modification enzyme [Lautropia mirabilis ATCC 51599]
          Length = 1497

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 49/184 (26%)

Query: 149 TVPDRVMSNIYEHLI----------RRF-----------GSEVSEGAEDFMTPRDVVHLA 187
            +    + ++YE L+          R F                +    + TP  +V   
Sbjct: 423 NMGPEELGSVYESLLELVPTVDVHARSFDFVGRTDAASTAGNARKLTGSYYTPDSLVQEL 482

Query: 188 TALLLDPDDAL-------FKESPGMIRTLYDPTCGTGGFLTDAMNHV------------- 227
               L+P             E+  +   + DP CG+G FL  A   +             
Sbjct: 483 IRSALEPVIEQRLASSPAAPEAALLAIRVIDPACGSGHFLLAAARRLAERLALLRSVASG 542

Query: 228 -------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQG 279
                   D     +       +G +  P    +    + +    E  P   L  ++Q G
Sbjct: 543 YEGAIRPKDYRHALREVVAHCIYGVDRNPMAVELARMALWLEGFEEGRPLDFLDHHLQVG 602

Query: 280 STLS 283
             L 
Sbjct: 603 DALL 606


>gi|126732028|ref|ZP_01747831.1| type II restriction enzyme, methylase [Sagittula stellata E-37]
 gi|126707560|gb|EBA06623.1| type II restriction enzyme, methylase [Sagittula stellata E-37]
          Length = 1182

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 80/325 (24%), Gaps = 81/325 (24%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG----------------------M 205
               +    + TP  VV       +       K + G                       
Sbjct: 375 ESKRKRDGVYYTPEWVVERIVDETVGRRLTDLKAACGWPSEKKNKLPTIKAIDAYEAELR 434

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC---------------------GSHHKIPPILVPHG 244
              + DP CG+G FL   + ++ D                       +  +       +G
Sbjct: 435 DIRIVDPACGSGAFLITTLAYLLDEWKALRDLRRQLGQKMAEEDWTDAAVREILRRNLYG 494

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTLSKDLFTG-------------- 289
            ++ P +  +    + +    SD       N I+ G++L    F                
Sbjct: 495 VDINPASVEITKLALWLHTARSDKPLSSLDNHIRDGNSLIGPEFYDGLAPYSADENERIN 554

Query: 290 --------------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                           F   + NPP+ K     K   +           G        G+
Sbjct: 555 AFDWRAAFPGVFERGGFDAVVGNPPYVKLQNFRKAHADMAAFLKRDPEDGGVYHSTQTGN 614

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN--GRAGSGESEIRRWLLENDLIEAIVAL 393
               +    K     N  GR   +  S    N  G    G  E  R L     I+     
Sbjct: 615 FDLYLPFIEKGIQLLNDDGRLGYIAPSVWQMNEYGAGLRGMVETGRHLW--GWID----F 668

Query: 394 PT-DLFFRTNIATYLWILSNRKTEE 417
            +  +F    + T L   S    +E
Sbjct: 669 GSHQIFEEATVYTALMFFSKHPNDE 693


>gi|20091204|ref|NP_617279.1| hypothetical protein MA2372 [Methanosarcina acetivorans C2A]
 gi|19916317|gb|AAM05759.1| predicted protein [Methanosarcina acetivorans C2A]
          Length = 1161

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 70/277 (25%), Gaps = 58/277 (20%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDN 110
            + + +   +  + +         F N +   +  L + N    L  Y+        +  
Sbjct: 103 IKVFTSTDPNKPEPDLLTNALKLDFLNLNRDLVLDLKAENKDEELYKYLILKLCNYLNKI 162

Query: 111 AKAIFEDFDFSSTIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYEHLIR---- 164
              +FE  +       L    LL    +  + + I    D     ++  IY+  I     
Sbjct: 163 MPFLFEKIE--DYTELLFPDKLLHTGSVLHDLNSIIPDEDWQEVEIIGWIYQDYIAPKKD 220

Query: 165 ----------RFGSEVSEGAEDFMTPR----------------------DVVHLATALLL 192
                     +   E         TP                        +V L    + 
Sbjct: 221 KVFADLKKNIKISKENIPAVTQLFTPHWIVRYLVENSLGRLWMLNRPESSIVDLMEYYVK 280

Query: 193 DPDD--ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------LVP 242
                    K +      + DP CG+G  L  A + +          P            
Sbjct: 281 PEQQETDFLKINSPEELKICDPACGSGHMLVYAFDLLYAIYEEEGYTPSEIPEIILTHNL 340

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPR---RDLSKNI 276
            G E++     +    + ++    D     + +  NI
Sbjct: 341 FGIEIDKRAGELAGFALTMKARGKDRHFFKKQVQPNI 377


>gi|146344269|ref|YP_001202125.1| hypothetical protein pQBR0379 [Pseudomonas fluorescens SBW25]
 gi|146188081|emb|CAM96411.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 268

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 51/158 (32%), Gaps = 18/158 (11%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
           + +      ++ ++        D     ++  +Y  L        +     F TP  +  
Sbjct: 62  KPQDQPKFGELLQHLVQ---ALDLQAGDLLGELYMRL-----GVSNADMGQFFTPPSIST 113

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           + + L +D +    +       TL +P  G+G  +    N + + G +++          
Sbjct: 114 VLSKLAMDTEHIQAQVKRRGFVTLSEPASGSGAMVIGFANSMLELGINYQQHLHATLIDL 173

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           ++     A     +L           +   +  G+TL+
Sbjct: 174 DIRAVHMAFIQLSLL----------HIPAVVVHGNTLT 201


>gi|313126057|ref|YP_004036327.1| type i restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312292422|gb|ADQ66882.1| type I restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 702

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 85/276 (30%), Gaps = 41/276 (14%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            + ++YE LI               TP ++  L     +  DD           T+ DP 
Sbjct: 139 DIGHLYETLI---AGNHRRVLGQHRTPTELAELMRTWAVSGDD-----------TVLDPG 184

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL-VPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            G G          A      +I       +G +  P    +      I     + RR  
Sbjct: 185 MGAG-------ELSAPFHPDWEISTDPGRVNGVDRSPLAALMGRVAQTISGQRHETRRTD 237

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              +     L++D          L NPP+ +         +K +   E       +PK S
Sbjct: 238 FFELDPAD-LTQD------VDAILCNPPYTRHESLSSAYKDKLNAQAENQT-ELEIPKTS 289

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-IV 391
                   +    L    + G RAA++     L  G        ++++LL    I+A ++
Sbjct: 290 ----PLYAYFYYHLGRFLDTGDRAAVLTPHHFLSRGFGEP----LKQFLLREFDIKALLL 341

Query: 392 ALPTD--LFFRTNIATYLWILSNRKTEERRGKVQLI 425
             P +   F      + + +L     E   G  + I
Sbjct: 342 DNPKNESKFETAQTTSMVVLLEATDDEADVGATRFI 377


>gi|86741640|ref|YP_482040.1| putative DNA methylase [Frankia sp. CcI3]
 gi|86568502|gb|ABD12311.1| putative DNA methylase [Frankia sp. CcI3]
          Length = 1239

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +  +FS           R + ++Y+ L      +  +      TP  V        L 
Sbjct: 185 GALVHDFSDP-----ASSTRFLGDLYQDL----SEQARKDYALLQTPEFVEEFILGRTLA 235

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVP---HG 244
           P    F  +      + DP CG+G FL  A + +       + G   K+    V    HG
Sbjct: 236 PAIDEFGLAE---VRMIDPACGSGHFLLGAFDLLLDRWQKQEHGIDVKVHVERVLGQVHG 292

Query: 245 QELEPETHAVCVAGMLIRRL------ESDPRRDLSKNIQQGSTLS 283
            ++ P   A+    ++I  L                 I  G +L 
Sbjct: 293 VDINPFAAAIARFRLVIAALAVCGITRLVDAPVWRIRIAIGDSLL 337


>gi|322411801|gb|EFY02709.1| SNF2 family protein [Streptococcus dysgalactiae subsp. dysgalactiae
           ATCC 27957]
          Length = 1826

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 69/276 (25%), Gaps = 59/276 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 496 KEYSDMKQSSLTAYYTDPHLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 547

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ +             +G EL+  T A+                  + +I+      
Sbjct: 548 PKHLRENSE---------LYGVELDTITGAIAK------------HLHPNSHIEV-KGFE 585

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   LSN PF              +      R+        D   +   +  
Sbjct: 586 TVAFNDNSFDLVLSNVPFA-------------NMRIADSRY--------DKPYMIHDYFV 624

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+        G        I + + E       V LP   F     
Sbjct: 625 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDTAFKAIAG 679

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           TN+ T +        +         + +  +     
Sbjct: 680 TNVTTDMLFFQKHMDKGYVADDLAFSGSIRYDKDDR 715


>gi|261496171|ref|ZP_05992577.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308123|gb|EEY09420.1| type I site-specific deoxyribonuclease methyltransferase subunit
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 506

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 64/214 (29%), Gaps = 56/214 (26%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           E+        V+   +E+LI +           + TPR V+ +   +L           P
Sbjct: 298 EVKLFNSNLDVVDEAFEYLINK---SSKGEKGQYFTPRYVIDMCVKML----------DP 344

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---------LEPETHAV 254
               T+ D   G+ GF   ++ HV +     +          E         ++ +  A+
Sbjct: 345 KPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPEQTDYVKEKVFAI 404

Query: 255 ---CVAGMLIRRLESDPRRDLSKNIQQGSTL-------------SKDLF----------- 287
                A  + R L      D   N+   +TL               D++           
Sbjct: 405 DFDEKAVRVARTLNL-IAGDGQTNVLHLNTLDYERWEDFTKEEEWNDVYGEGWKKLRKLR 463

Query: 288 ------TGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
                    +F   ++NPPF    ++ +     E
Sbjct: 464 KTKNENRDFQFDVLMANPPFAGDIKETRILARYE 497


>gi|262202558|ref|YP_003273766.1| type III restriction protein res subunit [Gordonia bronchialis DSM
            43247]
 gi|262085905|gb|ACY21873.1| type III restriction protein res subunit [Gordonia bronchialis DSM
            43247]
          Length = 1632

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 69/282 (24%), Gaps = 35/282 (12%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               +D +  S  + LEK    Y+        E+       +V++ +YE   R    + ++
Sbjct: 825  DTLDDANLESETSGLEK---FYQSV-RIRASEVTSADGKQQVIAELYERFFRVAFRKQAD 880

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V              F          + DP  GTG FLT  +       
Sbjct: 881  ALGIVYTPTEIVDFILRAADHVSRDTFGRGLTDDGVHILDPFTGTGTFLTRLLQSGLILP 940

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESDPRRDLS-KNIQQGSTLS-- 283
                       H  E+    + +    +      +   + +       + I    T    
Sbjct: 941  HDLGRKYRNELHANEIMLLAYYIAAVNVETTYHALTTPDGETGTYEPFEGIVLADTFQIT 1000

Query: 284  --KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGR--- 323
               D      F               +  + NPP+    +   D            R   
Sbjct: 1001 EDDDSMDSIMFPQNNLRIEKQLAAPINVIVGNPPYSVGQDSANDMNANIKYPTLDARIAD 1060

Query: 324  -FGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSS 363
             F       +  S                   G  A V +  
Sbjct: 1061 TFAARSTGTNKNSLYDSYYRAYRWATDRIGDTGIVAFVSNGG 1102


>gi|259907149|ref|YP_002647505.1| hypothetical protein EpC_04680 [Erwinia pyrifoliae Ep1/96]
 gi|259909633|ref|YP_002649989.1| putative phage-related protein [Erwinia pyrifoliae Ep1/96]
 gi|224962771|emb|CAX54226.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|224965255|emb|CAX56787.1| putative phage-related protein [Erwinia pyrifoliae Ep1/96]
 gi|261863678|gb|ACY01289.1| unknown [Erwinia pyrifoliae]
 gi|283476953|emb|CAY72837.1| hypothetical protein EPYR_00489 [Erwinia pyrifoliae DSM 12163]
 gi|283479712|emb|CAY75628.1| hypothetical protein EPYR_03248 [Erwinia pyrifoliae DSM 12163]
          Length = 241

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 59/169 (34%), Gaps = 10/169 (5%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            +   +++ +K  +   + +  + +    +  P   +  ++  L         +    F 
Sbjct: 62  KYMRIVSKYQKPDV-TNMAQLLAHVVSGLEESPGDFLGRVFMLL-----ELGDKYRGQFF 115

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  V  +   L L   +  F++ P +  TL +PTCG G       + + + G       
Sbjct: 116 TPWSVGVMMAQLQLGNVEEQFRDKPFI--TLSEPTCGAGCMALAFASVLREVGF--PPHR 171

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +     +++P    +    + +  +  +     + + ++   L   + 
Sbjct: 172 RMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGNALSDERRRVLYTPMH 220


>gi|150004142|ref|YP_001298886.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
 gi|149932566|gb|ABR39264.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
          Length = 255

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        + A         + + DP
Sbjct: 85  DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + V  ML+     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTVCNMLVHGCIGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF 292
              +    +L  + F     
Sbjct: 180 ---VIHHDSLFPENFMDGWM 196


>gi|55822816|ref|YP_141257.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55738801|gb|AAV62442.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 75

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 320 ELGRFG-PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
           +  RF   G+   +     FL H     +      GR AI L    LF G A   E  I 
Sbjct: 13  DDPRFREYGIAPKTKAEDSFLSHCLYHTKES----GRVAITLPQGVLFRGAA---EGRIP 65

Query: 379 RWLLENDLIE 388
           + L++   IE
Sbjct: 66  KALIDKHQIE 75


>gi|46907813|ref|YP_014202.1| hypothetical protein LMOf2365_1604 [Listeria monocytogenes serotype
           4b str. F2365]
 gi|217964270|ref|YP_002349948.1| N-6 DNA methylase [Listeria monocytogenes HCC23]
 gi|226224183|ref|YP_002758290.1| site specific DNA-methyltransferase [Listeria monocytogenes
           Clip81459]
 gi|254824359|ref|ZP_05229360.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254852205|ref|ZP_05241553.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931522|ref|ZP_05264881.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|290894449|ref|ZP_06557408.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|300765992|ref|ZP_07075963.1| hypothetical protein LMHG_11690 [Listeria monocytogenes FSL N1-017]
 gi|46881082|gb|AAT04379.1| conserved domain protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|217333540|gb|ACK39334.1| N-6 DNA methylase [Listeria monocytogenes HCC23]
 gi|225876645|emb|CAS05354.1| Putative site specific DNA-methyltransferase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605511|gb|EEW18119.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|290555987|gb|EFD89542.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|293583076|gb|EFF95108.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593593|gb|EFG01354.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513310|gb|EFK40386.1| hypothetical protein LMHG_11690 [Listeria monocytogenes FSL N1-017]
 gi|307571163|emb|CAR84342.1| adenine-specific methyltransferase [Listeria monocytogenes L99]
 gi|328465080|gb|EGF36354.1| site specific DNA-methyltransferase [Listeria monocytogenes 1816]
 gi|332312024|gb|EGJ25119.1| N-6 DNA methylase domain protein [Listeria monocytogenes str. Scott
           A]
          Length = 332

 Score = 48.0 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 46/259 (17%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +  +   LL                ++ DP CGT   LT  +N +       K
Sbjct: 95  HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 143

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRF 292
               +   G +++    ++      +   +   ++           L +D          
Sbjct: 144 GDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL--------LHQDGLANLLVDPV 190

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +S+ P G  +  D++A   E    E   F            LF+       +     
Sbjct: 191 DVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFLFIEQGMRYTKP---- 236

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG    ++  +          +    +++ +N  IE I+ LP  LF        + IL  
Sbjct: 237 GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILQK 292

Query: 413 RKTE-ERRGKVQLINATDL 430
              + +   +V L N + L
Sbjct: 293 ADVDVKPPKEVLLANLSSL 311


>gi|197294487|ref|YP_001799028.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853814|emb|CAM11755.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 83/287 (28%), Gaps = 74/287 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  V      +L      +          + DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRVL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  T                       N+   
Sbjct: 52  LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395
           +L  +               IVL +   F     S  S+  +  L  +   I +I++LP 
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178

Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434
           D+F      + + I +    K          +     IN+++ +   
Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225


>gi|282851934|ref|ZP_06261294.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282556943|gb|EFB62545.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 480

 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 33/166 (19%)

Query: 118 FDFSSTIARLEKAGL--------LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            D    + ++ +A          ++   + F  I+   D+    +M ++Y   + ++   
Sbjct: 300 IDKDKIVGKMIQAERASITKQIFIFLYKEIFLQIDA--DSGSLDIMGSMYSEFL-KYALG 356

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                   +TP  +  L    +    +            + D   G+G FL  +M  + D
Sbjct: 357 DGGSLGKVLTPPYITDLMAKAINVSMNDR----------VMDLATGSGAFLVSSMKLMID 406

Query: 230 ------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                            +        G E + + + +  + M++R 
Sbjct: 407 DANDTYGINSELANKKIRQIKKSQLLGVEYDAKMYTLAASNMILRG 452


>gi|260222775|emb|CBA32671.1| hypothetical protein Csp_D33310 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 396

 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 82/260 (31%), Gaps = 43/260 (16%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R   S   +    F+TP  + +L  +LL           P    ++ +   G G  L  
Sbjct: 1   MRNRYSSAKQELGQFLTPAPIANLLASLL-----------PPGGESILELGAGAGALLEA 49

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + +           +       L+ E  A  +A +LI            K I++    
Sbjct: 50  VSSRMPHLDVTAVEKDVA------LKRELRARGLASLLIGG-----DATSPKTIRR---- 94

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
              L     F Y + NPP+     +       E       + G  L         FL   
Sbjct: 95  ---LAERAPFDYIVGNPPYAMGVSRKASIKLLEQYGLYNAQRGVRL------DTYFLAQS 145

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
            + +         A   +   PLF+       +  R+ LL+      IV LP D F    
Sbjct: 146 ISMMATTG-----AGAFILPMPLFSDG---SYATFRQALLQRFSNITIVELPIDTFGNAE 197

Query: 403 IATYLWILSNRKTEERRGKV 422
           ++T +   S  +   +R KV
Sbjct: 198 VSTAICSFSGLEGRRKRVKV 217


>gi|157419748|gb|ABV55437.1| SNF2-related helicase [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 2278

 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           + +         E+          +E+  ++    FY      L+       R+ +E+ I
Sbjct: 557 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 614

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163
            +       + ++ +     A   +  LL K    + G+        +   S   E L  
Sbjct: 615 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 668

Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
               + +          + T   ++               +        + DP+ GTG F
Sbjct: 669 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 720

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H+ +             +G EL+  T A+                +    I+  
Sbjct: 721 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 761

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T+    F    F   +SN PF              +      R+        D   +  
Sbjct: 762 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 797

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K     + GG+ AI+        G        I + + E       V LP   F 
Sbjct: 798 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 852

Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
               T++ T +        +         + +  +     
Sbjct: 853 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 892


>gi|47093444|ref|ZP_00231208.1| conserved domain protein [Listeria monocytogenes str. 4b H7858]
 gi|47018172|gb|EAL08941.1| conserved domain protein [Listeria monocytogenes str. 4b H7858]
          Length = 321

 Score = 48.0 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 46/259 (17%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +  +   LL                ++ DP CGT   LT  +N +       K
Sbjct: 84  HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 132

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRF 292
               +   G +++    ++      +   +   ++           L +D          
Sbjct: 133 GDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL--------LHQDGLANLLVDPV 179

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +S+ P G  +  D++A   E    E   F            LF+       +     
Sbjct: 180 DVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFLFIEQGMRYTKP---- 225

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG    ++  +          +    +++ +N  IE I+ LP  LF        + IL  
Sbjct: 226 GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILQK 281

Query: 413 RKTE-ERRGKVQLINATDL 430
              + +   +V L N + L
Sbjct: 282 ADVDVKPPKEVLLANLSSL 300


>gi|313623593|gb|EFR93765.1| adenine-specific methyltransferase [Listeria innocua FSL J1-023]
          Length = 220

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 74/227 (32%), Gaps = 40/227 (17%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP CGT   LT  MN +       K    +   G +++    ++      +   +  
Sbjct: 5   SILDPACGTANLLTTVMNQL-----ELKGDVEVHASGVDVDDLLISLA-----LVGADLQ 54

Query: 268 PRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            ++           L +D             +S+ P G  +  D++A   E    E   F
Sbjct: 55  RQKMTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCREEGHSF 105

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                       LF+       +     GG    ++  +          +    +++ +N
Sbjct: 106 ---------AHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFIKKN 148

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430
             IE I+ LP  LF        + IL     + +   +V L N + L
Sbjct: 149 GHIEGIIKLPETLFKSEQARKSILILRKADVDVKPPKEVLLANLSSL 195


>gi|87124661|ref|ZP_01080509.1| hypothetical protein RS9917_00527 [Synechococcus sp. RS9917]
 gi|86167540|gb|EAQ68799.1| hypothetical protein RS9917_00527 [Synechococcus sp. RS9917]
          Length = 1379

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 43/146 (29%), Gaps = 31/146 (21%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA 223
           +E    +    TPR +        L P     +  P   +     + DP  G+G FL ++
Sbjct: 523 TEERRRSGSHYTPRSLTRPIVEEALRPWMERCEYRPKASQILDLKICDPAMGSGAFLVES 582

Query: 224 MNHVADCGSHH--------------------------KIPPILVPHGQELEPETHAVCVA 257
             ++A+                               ++      +G +  P    +   
Sbjct: 583 CRYLAELLEQAWSREGLPDALKPGGHALGEEPLIYARRLIAQSCLYGVDKNPFAVNLARL 642

Query: 258 GMLIRRLESDPRRDLSKN-IQQGSTL 282
            + +  L  D       + ++ G +L
Sbjct: 643 SLWLVSLSKDAPFTFVDHALKCGDSL 668


>gi|76797967|ref|ZP_00780227.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
 gi|76586691|gb|EAO63189.1| SNF2 family protein [Streptococcus agalactiae 18RS21]
          Length = 2271

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           + +         E+          +E+  ++    FY      L+       R+ +E+ I
Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163
            +       + ++ +     A   +  LL K    + G+        +   S   E L  
Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664

Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
               + +          + T   ++               +        + DP+ GTG F
Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H+ +             +G EL+  T A+                +    I+  
Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T+    F    F   +SN PF              +      R+        D   +  
Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K     + GG+ AI+        G        I + + E       V LP   F 
Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848

Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
               T++ T +        +         + +  +     
Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888


>gi|148543794|ref|YP_001271164.1| adenine-specific DNA methylase-like protein [Lactobacillus reuteri
           DSM 20016]
 gi|184153197|ref|YP_001841538.1| putative modification methylase [Lactobacillus reuteri JCM 1112]
 gi|227363226|ref|ZP_03847358.1| DNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|325682166|ref|ZP_08161684.1| adenine-specific methyltransferase [Lactobacillus reuteri MM4-1A]
 gi|148530828|gb|ABQ82827.1| Adenine-specific DNA methylase-like protein [Lactobacillus reuteri
           DSM 20016]
 gi|183224541|dbj|BAG25058.1| putative modification methylase [Lactobacillus reuteri JCM 1112]
 gi|227071682|gb|EEI09973.1| DNA methyltransferase [Lactobacillus reuteri MM2-3]
 gi|324978810|gb|EGC15759.1| adenine-specific methyltransferase [Lactobacillus reuteri MM4-1A]
          Length = 277

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 44/267 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  +IR+   + +       TP  +  +   L+              I+T++DP  GT  
Sbjct: 26  FLKVIRKDAIQANHQM----TPDTIGLIMAFLI------EKVTKIKEIKTVFDPAVGTAN 75

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT  MN +            +V +G + + +   V      ++ L        +     
Sbjct: 76  LLTTVMNQLK-----VNGDKDIVGYGIDNDEDMLEVASVSTELQHLNVKLYHQDAVT--- 127

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                       +    +S+ P G            E+      R   G    S    L 
Sbjct: 128 -------ALDIPQCDLAISDLPIGY-------YPLDENAKNYQTRAKEGH---SYVHHLL 170

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    N L+      G   + L  S LF  +         +W+     ++ ++ LP +LF
Sbjct: 171 IEQSMNYLKP-----GAFGVFLVPSSLFQTKESQS---FVKWIQSVAYLQGLINLPAELF 222

Query: 399 FRTNIATYLWILSNRKTE-ERRGKVQL 424
              N    + +L  +  + ++  KV L
Sbjct: 223 ANPNAQKSILLLQRQGGDSKQAAKVLL 249


>gi|126658645|ref|ZP_01729791.1| N-6 DNA methylase [Cyanothece sp. CCY0110]
 gi|126620082|gb|EAZ90805.1| N-6 DNA methylase [Cyanothece sp. CCY0110]
          Length = 512

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 76/253 (30%), Gaps = 44/253 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I        +    F TP  V  +    + +                 DP  G G     
Sbjct: 7   ISNIPINYRKEYGQFFTPSLVAQMMAKWVTENHPEKI----------LDPAFGLG----- 51

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                 +  S  K+         E++            +  ++++        I     L
Sbjct: 52  ---IFYEEISKLKLQYQWHFTAYEIDNNILN------YLHNIQNNNNLT----IFNQDYL 98

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D      +   + NPP+ +  +             ++G+   G    S+ + +FL+  
Sbjct: 99  ESD---MDYYDAIICNPPYLRFQKFKNRHDILPKIEQQIGKKLGGY---SNIASIFLIKA 152

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400
             +L    N  GR A +L       G       EI++ L+EN L++ I+      D+F  
Sbjct: 153 LQQL----NLNGRLAFILPFEFFNTGYG----KEIKKTLIENYLLKQIIIFANEKDIFPD 204

Query: 401 TNIATYLWILSNR 413
                 + +  N 
Sbjct: 205 ATTTICILLCQND 217


>gi|323127133|gb|ADX24430.1| SNF2 family protein [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 2274

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           + +         E+          +E+  ++    FY      L+       R+ +E+ I
Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163
            +       + ++ +     A   +  LL K    + G+        +   S   E L  
Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664

Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
               + +          + T   ++               +        + DP+ GTG F
Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H+ +             +G EL+  T A+                +    I+  
Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T+    F    F   +SN PF              +      R+        D   +  
Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K     + GG+ AI+        G        I + + E       V LP   F 
Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848

Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
               T++ T +        +         + +  +     
Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888


>gi|240147421|ref|ZP_04746022.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257200385|gb|EEU98669.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 1560

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 52/409 (12%), Positives = 104/409 (25%), Gaps = 77/409 (18%)

Query: 54   AVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
             V  +      +     +  +  +G   ++ +  +                   F  N +
Sbjct: 1092 EVIAEPEPQNEAEAPKEQPQIDKSGAVNFHIAPET-EKSDGKGFAAK-----EKFRQNVE 1145

Query: 113  AI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFG 167
            AI   E  +  + IA  E+  +L K        +   +T  +          +     + 
Sbjct: 1146 AIRTLEKIEGENRIATPEEQEILAKYVGWGGLADAFDETKTNWASEYQELKSLLSAEEYD 1205

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            S          T   ++               +        + +P  G G F       +
Sbjct: 1206 SARESTLNAHYTSPVIIKAIY--------DAMERMGFSKGNILEPAMGIGNFFGMLPEKM 1257

Query: 228  ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
             +             +G EL+  T  +                +    I       K  +
Sbjct: 1258 QE----------SRLYGVELDGITGRIAR----------QLYPNADVKITG---FEKTDY 1294

Query: 288  TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
                F   + N PFG+    D+   +      +                 F     +K+ 
Sbjct: 1295 PNDFFDVAIGNVPFGQYKVADRAYDKHNFLIHDY----------------FFAKALDKVR 1338

Query: 348  LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                 GG  A V S   +          E+R++L +   +   + LP   F     T + 
Sbjct: 1339 P----GGVVAFVTSKGTMDKKSP-----EVRKYLAQRAELLGAIRLPNTAFKENAGTEVT 1389

Query: 405  TYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            + +  L        R +V  I    +      +G        D    I+
Sbjct: 1390 SDILFLKK------RDRVIDIEPDWVHLCENEDGIAMNQYFADHPEMIM 1432


>gi|317152124|ref|YP_004120172.1| type III restriction protein res subunit [Desulfovibrio aespoeensis
            Aspo-2]
 gi|316942375|gb|ADU61426.1| type III restriction protein res subunit [Desulfovibrio aespoeensis
            Aspo-2]
          Length = 1613

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 89/312 (28%), Gaps = 43/312 (13%)

Query: 105  ASFSDNAKAIFEDFD---FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
               S   + + +  +          LEK    Y   K  +    + +     V+  +Y+ 
Sbjct: 807  NPISQAMQKVLDTLEGHHLHKEADTLEK---FYDSVKLRAEGIDNAEGKQKIVV-ELYDK 862

Query: 162  LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFL 220
              R     ++E      TP +VV      + D   + F ++ G     + DP  GTG F+
Sbjct: 863  FFRNAFPRMTERLGIVYTPVEVVDFIIHSVNDVLKSEFGQTLGSEGVHIIDPFTGTGTFI 922

Query: 221  TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRRDLSKNIQ 277
            T  +                  H  E+    + +    +       +    + +  + I 
Sbjct: 923  TRLLQSGLISPEQLPHKYKHEIHANEIVLLAYYIAAINIEAVYHTLMGGKGKYEPFEGIC 982

Query: 278  QGST------------LSKD------LFTGKRFHYCLSNPPFGKKWEKDKDAVE------ 313
               T            L +D                + NPP+    + D D         
Sbjct: 983  LTDTFQMYERKDMISELLEDNSERRMRQKKLDIRVIIGNPPYSSGQKSDNDDAANVKYAG 1042

Query: 314  -KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
              E       +   G P+    S +                G    V ++  L NG+A  
Sbjct: 1043 LDEEIQNTYVKASTGNPRSLYDSYI---RAFRWASSRIKDSGIIGFVSNAGFL-NGKAAD 1098

Query: 373  GESEIRRWLLEN 384
            G   +R+ L+  
Sbjct: 1099 G---MRKCLVSE 1107


>gi|3806109|gb|AAC69195.1| HsdM-like protein [Staphylococcus aureus]
          Length = 41

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 6  GSAASLANFIWKNAEDLWGDFKHTDF 31
             A L   +W  A DL G+   ++F
Sbjct: 16 QQQAELHKKLWSIANDLRGNMDASEF 41


>gi|34762952|ref|ZP_00143931.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887375|gb|EAA24466.1| Adenine-specific methyltransferase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 556

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 86/223 (38%), Gaps = 36/223 (16%)

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           ++ +   V +E+++     F      + + S+ ++ H+   L       G+   ++ ++ 
Sbjct: 162 YKNNIKEVTEEYRSKLENNFKIPNKILKNASLEWIFHIL--LINQLKEKGKGISLVKTNI 219

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L+          IR++ +EN  IE+I+ LP ++         L + S +       K++ 
Sbjct: 220 LYKPEN----KNIRKYFVENGYIESIIYLPKNMLIDYPFPLALIVFSKK-----NKKIKF 270

Query: 425 INATDLWTSIR-----------------NEGKKRRIINDDQRRQILDIYVSRENGKFS-- 465
           I+A       +                  + +   II D    +I+D+  +++N K S  
Sbjct: 271 IDAYKFCKIEKFKIEFIDNYFKNPKISEIKEQNINIIIDTNVEKIIDLINNQKNIKESFS 330

Query: 466 -RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            ++ D     Y  +        +F +    L + + +I ++ +
Sbjct: 331 KKIEDIVEKDYNLVVTE-----NFEILVDILKKFKNEIKFKDI 368


>gi|254673274|emb|CBA08342.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
          Length = 660

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 35/139 (25%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250
              DP CG G FL  A + +                            +   HG E++  
Sbjct: 88  QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147

Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295
              +    M ++  + + R                + +  I   ++L       +   Y 
Sbjct: 148 AVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAEIIHANSLRTPW---QAADYI 204

Query: 296 LSNPPFGKKWEKDKDAVEK 314
             +PPF     + K+    
Sbjct: 205 FGDPPFIGSTYQTKEQKND 223


>gi|254670013|emb|CBA04764.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 660

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 35/139 (25%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250
              DP CG G FL  A + +                            +   HG E++  
Sbjct: 88  QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147

Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295
              +    M ++  + + R                + +  I   ++L       +   Y 
Sbjct: 148 AVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDAAEIIHANSLRTPW---QAADYI 204

Query: 296 LSNPPFGKKWEKDKDAVEK 314
             +PPF     + K+    
Sbjct: 205 FGDPPFIGSTYQTKEQKND 223


>gi|329955480|ref|ZP_08296388.1| hypothetical protein HMPREF9445_01235 [Bacteroides clarus YIT
           12056]
 gi|328525883|gb|EGF52907.1| hypothetical protein HMPREF9445_01235 [Bacteroides clarus YIT
           12056]
          Length = 239

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  +  L         +          + + DPTCG+G  L     H       
Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               P     G+++      + V  ML+     +             +L    FT   + 
Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328
              + P  G    +     E  +   E  GRF   +
Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231


>gi|218264244|ref|ZP_03478116.1| hypothetical protein PRABACTJOHN_03806 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222199|gb|EEC94849.1| hypothetical protein PRABACTJOHN_03806 [Parabacteroides johnsonii
           DSM 18315]
          Length = 239

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  +  L         +          + + DPTCG+G  L     H       
Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               P     G+++      + V  ML+     +             +L    FT   + 
Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328
              + P  G    +     E  +   E  GRF   +
Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231


>gi|198275467|ref|ZP_03207998.1| hypothetical protein BACPLE_01632 [Bacteroides plebeius DSM 17135]
 gi|198271096|gb|EDY95366.1| hypothetical protein BACPLE_01632 [Bacteroides plebeius DSM 17135]
          Length = 239

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 28/156 (17%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  +  L         +          + + DPTCG+G  L     H       
Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGDPTCGSGRLLLAYHAH------- 147

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               P     G+++      + V  ML+     +             +L    FT   + 
Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328
              + P  G    +     E  +   E  GRF   +
Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231


>gi|308061998|gb|ADO03886.1| hypothetical protein HPCU_03620 [Helicobacter pylori Cuz20]
          Length = 1295

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 88/307 (28%), Gaps = 35/307 (11%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +N+++ I+   D                 L+    LY+  K    +          ++ 
Sbjct: 492 GDNIKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMRAKSQKSQQELIK 547

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
           N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 548 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATDGILKKHFNTDFNDKNITIFDPFTG 607

Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TG F+   ++   +  S    K   +      ++    + + +  +       D      
Sbjct: 608 TGSFIARLLSKENELISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQSRDGSLKNF 667

Query: 274 KNIQQGSTL--------------SKDLFTGKR---------FHYCLSNPPF--GKKWEKD 308
           KNI    +L               +DL   K              + NPP+  G K E D
Sbjct: 668 KNIALTDSLDIYEEKNDKGVLPILEDLKENKEIKSTIEKRNIRVIIGNPPYSAGSKSEND 727

Query: 309 KDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
            +      K  +      G     K+   +   L+             G    V++ S +
Sbjct: 728 NNQNLSHPKLEKRVYEKYGKNSTAKVGATTRDTLIQSIYMASELLKDRGVLGFVVNGSFI 787

Query: 366 FNGRAGS 372
            +  A  
Sbjct: 788 DSKSADG 794


>gi|302205704|gb|ADL10046.1| DNA or RNA helicase of superfamily II [Corynebacterium
            pseudotuberculosis C231]
 gi|308275940|gb|ADO25839.1| DNA or RNA helicase [Corynebacterium pseudotuberculosis I19]
          Length = 1648

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 94/356 (26%), Gaps = 57/356 (16%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
               E     +    LEK    Y         E+   +   +V+  +YE   ++   + ++
Sbjct: 824  DALEAAHLDTETESLEK---FYDSV-RVRASEVSSASGKQQVIKELYERFFQKAFKKQAD 879

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTD--------- 222
                  TP ++V        D     F          + DP  GT  F            
Sbjct: 880  SLGIVYTPVEIVDFILRAADDVSRRHFGRGLSDEGVCILDPFAGTSTFTVRLLQSGLIRP 939

Query: 223  ---AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
               A  +  +      +          +   T+    A    R  E +P     KNI   
Sbjct: 940  EDLARKYANEIFVTEIMLLAYYVSAVNI-ETTYNALRAEAAQRGGEPEPEYVPFKNIALA 998

Query: 280  STL----------------SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
             T                 + D    ++    +  + NPP+    +   D          
Sbjct: 999  DTFQIHEDGDIPDLNIFRENNDTIERQKAAPINVVIGNPPYSAGQKSANDLNANLKYPSL 1058

Query: 321  LGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
              R        S   + + L+   +             G  A V +   + +G  G G  
Sbjct: 1059 DARIAETYAAKSTATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGGWI-DGNTGDG-- 1115

Query: 376  EIRRWLLENDLIEAIVALPTDL-----------FFRTNIATYLWILSNRKTEERRG 420
             +R  + E+     +  L  ++            F     T + I    K   R+G
Sbjct: 1116 -VRLSMAEDFTDLYVFNLRGNMRNSDWRSEGGQIFGAGSQTTIAIFVAVKDSSRKG 1170


>gi|237717755|ref|ZP_04548236.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229452984|gb|EEO58775.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 1000

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 52/216 (24%)

Query: 165 RFGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +     E     F TP +V      +L          SP     + D  CG G F    
Sbjct: 60  EYAEAKKESEMGQFFTPHEVCRDMADML----------SPTSSEMILDMCCGMGNFF--- 106

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            NH+ +             +G +++ +  +V                    +I++     
Sbjct: 107 -NHLPNL---------HNAYGFDIDGKAVSVAR------------YLYPDAHIEKCD--L 142

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  +  +RF   + NPPF  K+   K + E             G+          LM + 
Sbjct: 143 RQYYPEQRFDIVIGNPPFNLKF-DYKLSQEYYMDKAYDVLNPAGI----------LMIIV 191

Query: 344 --NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             + ++       R A + +S+  F G+     S  
Sbjct: 192 PGSFMQSGFWEKTRIAGI-NSNFSFVGQTKLAPSAF 226


>gi|18138464|ref|NP_542568.1| putative methyltransferase-endonuclease [Halorubrum phage HF2]
 gi|32453891|ref|NP_861654.1| putative methyltransferase-endonuclease [Halovirus HF1]
 gi|18000405|gb|AAL54988.1| putative methyltransferase-endonuclease [Halorubrum phage HF2]
 gi|32346459|gb|AAO61365.1| putative methyltransferase-endonuclease [Halovirus HF1]
          Length = 1288

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 21/155 (13%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           FS ++   + +   ++ ++Y+H    F  E  +   +F TP+ V+      +        
Sbjct: 377 FSVLKFDFEEIEGDLLGDLYQH---YFDPETRKALGEFYTPQPVIDYIMDGVDYNVGVS- 432

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                    L DP+CG+G FL +A+N   +    +   P    H  +L    H       
Sbjct: 433 ------GERLIDPSCGSGTFLVEAVNRYIEDVKRYNDDPDWEEHLTDLCTTPH------- 479

Query: 260 LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKR 291
            I  L+  P   L   I+    +    +D     R
Sbjct: 480 -IVGLDIHPFAVLMAQIRFMVAILPEYRDAKEDNR 513


>gi|328952687|ref|YP_004370021.1| DNA methyltransferase [Desulfobacca acetoxidans DSM 11109]
 gi|328453011|gb|AEB08840.1| DNA methyltransferase [Desulfobacca acetoxidans DSM 11109]
          Length = 1091

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 58/200 (29%), Gaps = 16/200 (8%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +   I  D      I       LL ++            +  +  +   YE  +  +  
Sbjct: 263 ADTLNILGDPKARDEIKTPVD--LLERVIGAIDPAAFLKKSKGEPWL-YFYEDFLAAYDP 319

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP---GMIRTLYDPTCGTGGFLTDAMN 225
           ++ +    + TP +VV     L+ +     F+             DP  GTG ++  A+ 
Sbjct: 320 KMRKERGVYYTPVEVVQAQVRLVAELLTERFEADYSFVSPDVVTLDPGAGTGTYILAALQ 379

Query: 226 HVADCGSHHKIP---------PILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKN 275
           H        K P              H  E+    +AV    +    L E     +   +
Sbjct: 380 HGLQQIEEAKGPGMRAKAAAQAARNIHAFEILVGPYAVAHLRLTQEILAEGGQLPEDGVH 439

Query: 276 IQQGSTLSKDLFTGKRFHYC 295
           +    TL   L     F + 
Sbjct: 440 VYLTDTLESPLKPLPHFPFM 459


>gi|126667783|ref|ZP_01738750.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17]
 gi|126627731|gb|EAZ98361.1| hypothetical protein MELB17_09048 [Marinobacter sp. ELB17]
          Length = 2567

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 70/226 (30%), Gaps = 49/226 (21%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            ++ P           +  + +P+ GT  F                   +      EL+P 
Sbjct: 895  IIQPMWEALDRFNIPLNRVLEPSAGTLQF--------KSFMPKELESKVTHTTAVELDPI 946

Query: 251  THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            T  +         +  D     S          K  F    F   +SN PFG     D  
Sbjct: 947  TARIAAM------IHPDATVISSG-------FEKTTFPDGFFDCVISNVPFG-----DYK 988

Query: 311  AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
              + +H             +       F +   +K+      GG  + + SS  L     
Sbjct: 989  IFDPQHPL-----------RKESIHNAFFLKGLDKVRP----GGVVSFLTSSYVL----- 1028

Query: 371  GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
             S ++++R+ +++   +   V LPT  F     T++ T +  L  +
Sbjct: 1029 DSKDTDVRKEIMDRAHVVGAVRLPTGTFDKTTGTSVVTDILFLQKK 1074


>gi|22537429|ref|NP_688280.1| SNF2 family protein [Streptococcus agalactiae 2603V/R]
 gi|22534305|gb|AAN00153.1|AE014250_16 SNF2 family protein [Streptococcus agalactiae 2603V/R]
          Length = 2274

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 53/400 (13%), Positives = 106/400 (26%), Gaps = 72/400 (18%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           + +         E+          +E+  ++    FY      L+       R+ +E+ I
Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163
            +       + ++ +     A   +  LL K    + G+        +   S   E L  
Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664

Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
               + +          + T   ++               +        + DP+ GTG F
Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPSLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 H+ +             +G EL+  T A+                +    I+  
Sbjct: 717 FAAMPKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T+    F    F   +SN PF              +      R+        D   +  
Sbjct: 758 ETV---AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DRPYMIH 793

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K     + GG+ AI+        G        I + + E       V LP   F 
Sbjct: 794 DYFVKKSLDLLHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFK 848

Query: 399 --FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
               T++ T +        +         + +  +     
Sbjct: 849 AIAGTSVTTDMLFFQKHLDKGYVADDLAFSGSIRYDKDSR 888


>gi|322511339|gb|ADX06648.1| putative Eco57I-like restriction endonuclease [Organic Lake
            phycodnavirus]
          Length = 1156

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 8/144 (5%)

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDP--DDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                +   +  TP  +++     L      +             +DP  G G F      
Sbjct: 947  QSEKKQFGEVFTPMYLINEMLDNLDKHYIKEHGRSIFTEPSFKWFDPASGMGNFPVAVYL 1006

Query: 226  HVADCGSHHKIPPILVPHGQELE-PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + +   H                     +    + I     +       N+ +G+TL  
Sbjct: 1007 KLMEGLKHQIPNDEDRKKHIIENMLYMSELNKKNVFITHQIFNMNNQYKLNMYEGNTLEL 1066

Query: 285  D-----LFTGKRFHYCLSNPPFGK 303
            D          RF   L NPP+ K
Sbjct: 1067 DIVSVWGIQNNRFDVILGNPPYNK 1090


>gi|320195302|gb|EFW69930.1| Type I restriction-modification system, DNA-methyltransferase
          subunit M [Escherichia coli WV_060327]
          Length = 58

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 14/38 (36%)

Query: 17 KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSA 54
            A    G  + +++  V+L   L + +    E  R  
Sbjct: 21 DTANQFRGSVESSEYKHVVLSLVLQKLISDKFEARRKK 58


>gi|294783677|ref|ZP_06749001.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480555|gb|EFG28332.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 746

 Score = 47.7 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 11/139 (7%)

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             LF + +    E      G+A  ++ S  L++        +IR + ++ + IEAI+ LP
Sbjct: 376 EWLFYIKMI---EEQLKDEGKALSLVESEILYDYNNN---EKIREYFIKKEYIEAIILLP 429

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILD 454
             + F  N +  L + S         K++ ++A++   + + + KK  I+ D    +I++
Sbjct: 430 ERIMFDINASLALIVFSKG-----NKKIRFVDASNFGKAKKIKEKKITILRDSDVDEIIN 484

Query: 455 IYVSRENGKFSRMLDYRTF 473
           +  +  N K +   + + F
Sbjct: 485 LLNNDTNSKVAISKEIKDF 503


>gi|315656096|ref|ZP_07908987.1| methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315493098|gb|EFU82698.1| methylase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 755

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 54/225 (24%), Gaps = 60/225 (26%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--------DALF 199
             +   +   I+E  +     E         T  + +H     L   D        +   
Sbjct: 299 SQISPTIFGGIFESTL---NPETRRAGGMHYTSPESIHKVIDPLFLDDLKAELRAINDAE 355

Query: 200 KESPGM-------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239
             +P                    DP  G+G FLT+    +                   
Sbjct: 356 GLTPRQRTNRYRAFHERLCKMRFLDPASGSGNFLTETYLQLRHLEDEVLSRLNAGQTAFS 415

Query: 240 -------------LVPHGQELEPETHAVC---------VAG----MLIRRLESDPRRDLS 273
                           +G E+      V           A     ML+   + D     S
Sbjct: 416 LAEVGASVTRVSLDQFYGIEINDFAVKVSEAALWISRLKANGETEMLLSLGDDDFPLRES 475

Query: 274 KNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            +I Q + L+ D        +  Y L NPPF      D+      
Sbjct: 476 AHIVQANALTLDWNTVLPADQCSYVLGNPPFIGYSRLDESQKVDR 520


>gi|304391126|ref|ZP_07373078.1| methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304326009|gb|EFL93255.1| methylase [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 947

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 54/225 (24%), Gaps = 60/225 (26%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--------DALF 199
             +   +   I+E  +     E         T  + +H     L   D        +   
Sbjct: 299 SQISPTIFGGIFESTL---NPETRRAGGMHYTSPESIHKVIDPLFLDDLKAELRAINDAE 355

Query: 200 KESPGM-------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239
             +P                    DP  G+G FLT+    +                   
Sbjct: 356 GLTPRQRTNRYRAFHERLCKMRFLDPASGSGNFLTETYLQLRHLEDEVLSRLNAGQTAFS 415

Query: 240 -------------LVPHGQELEPETHAVC---------VAG----MLIRRLESDPRRDLS 273
                           +G E+      V           A     ML+   + D     S
Sbjct: 416 LAEVGASVTRVSLDQFYGIEINDFAVKVSEAALWISRLKANGETEMLLSLGDDDFPLRES 475

Query: 274 KNIQQGSTLSKDL---FTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            +I Q + L+ D        +  Y L NPPF      D+      
Sbjct: 476 AHIVQANALTLDWNTVLPADQCSYVLGNPPFIGYSRLDESQKVDR 520


>gi|189459439|ref|ZP_03008224.1| hypothetical protein BACCOP_00062 [Bacteroides coprocola DSM 17136]
 gi|189433896|gb|EDV02881.1| hypothetical protein BACCOP_00062 [Bacteroides coprocola DSM 17136]
          Length = 1002

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 53/380 (13%), Positives = 101/380 (26%), Gaps = 114/380 (30%)

Query: 136 ICKNFSGIELHPDTVPDR-----VMSNIYEHLIR------------RFGSEVSEGAEDFM 178
           + ++F     +P            +S+IY+  +                +E  +      
Sbjct: 291 VFESFLANLYYPSPYRFDVIPLKTLSDIYDLFLGYQLVVDGSSVTDELKAEFKKSNGAVT 350

Query: 179 TPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH---- 233
           TP  +V+      +     A           + D  CG+G FL  A +++          
Sbjct: 351 TPEALVNQVIECTIPFNTIANLTIEQIFNLKIIDIACGSGVFLVGAYDYLIKQIEKKLER 410

Query: 234 ---------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
                                 +       +G ++ PE   V    + +R +++    D 
Sbjct: 411 NQDCDAELYADLEYPVLNINGRRKLINNCIYGVDINPEAVEVSKMSLCLRLIDNYSPEDF 470

Query: 273 S--------------KNIQQGSTL-----------------------SKDL-------FT 288
                           NI+ G+TL                       + D        F 
Sbjct: 471 DAVGLLGSQILKGIGANIRCGNTLVGTDIEQHFPAIADNMRELQETNAFDWESSFPTVFE 530

Query: 289 GKRFHYCLSNPP------FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
              F + + NPP      +          +++ + + + G+    +P        F+   
Sbjct: 531 NGGFDFVVGNPPYVEVKNYNVGLPHMAAYIKRFYSSSKNGKIDLAIP--------FIEKG 582

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNG-RAGSGESEIRRWLLE--NDLIEAIVALPTDLFF 399
            N L    N  GR   ++           G  E    R LL   +D  E       DLF 
Sbjct: 583 INLL----NANGRLGFIVQKRFFKTEYGKGIRELLTTRRLLNGVHDYEET------DLFA 632

Query: 400 RTNIATYLWILSNRKTEERR 419
                  + +  N +     
Sbjct: 633 GRLTYVAIVVCDNNRENNNH 652


>gi|260593522|ref|ZP_05858980.1| putative DNA methylase [Prevotella veroralis F0319]
 gi|260534510|gb|EEX17127.1| putative DNA methylase [Prevotella veroralis F0319]
          Length = 1514

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 40/242 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISDTLTSVNVPIRRCLDPSAGMGAF---AETFARQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + +R    +   +L                  ++    SN PFG     D  
Sbjct: 166 LHPYGKGNVFVRNEPFEAIGELED--------------KDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 IYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGILAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    +  Q +
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315

Query: 426 NA 427
            A
Sbjct: 316 EA 317


>gi|222476117|ref|YP_002564638.1| hypothetical protein Hlac_3219 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454488|gb|ACM58752.1| hypothetical protein Hlac_3219 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 1298

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 84/329 (25%), Gaps = 90/329 (27%)

Query: 38  FTLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
              ++ LE           ++ + Y     ++   + F++   Y   N      S     
Sbjct: 303 LIFIKFLEDKGIVRPDLLQSILDTYEDGLYTDSLYQQFIQPLFYDVLNKRPDKRSPQIQD 362

Query: 95  NTRNNLESYIAS--FSDNA-------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
                   Y+    F  +        +  F++ DF        +  +L  I +       
Sbjct: 363 IELFADIPYLNGGLFRPSIQHDGSDDREQFKEADFD------VRNSILRSILELLESYSF 416

Query: 146 HPDTV----PDRVMSNIYEHLIRRF---GSEVSEGAEDFMTPRDVVHLATALLLDP-DDA 197
             D         V+ N++E  I       ++ ++    + TP+++   +    + P    
Sbjct: 417 STDGSVTDLDPSVLGNVFEKTINYITADNADQNKELGAYYTPKEITRFSAERTVRPALFD 476

Query: 198 LFKE-------------------------------------SPGMIRTLYDPTCGTGGFL 220
             K+                                            + DP CG+G FL
Sbjct: 477 RLKQVVIEERGWPEAELENYDTVYELIESLPASMDLITTLLGEVDNFRVVDPACGSGHFL 536

Query: 221 TDAMNHVADCGSH--------------HKIPPILVPHGQELEPETHAVCVAGMLIRRL-- 264
           T  +  +                     K       +G ++      +      +  +  
Sbjct: 537 TSVLEEIVGVRRALWAHTDSYPHEQALKKTTVQHNIYGVDIVGPAVEIAKLRCWLSVIAE 596

Query: 265 -------ESDPRRDLSKNI----QQGSTL 282
                    D       NI    +QG++L
Sbjct: 597 LQQEDLESMDQEELALPNIAFNLRQGNSL 625


>gi|197294217|ref|YP_001798758.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|197294356|ref|YP_001798897.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|197294405|ref|YP_001798946.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
 gi|197294818|ref|YP_001799359.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853544|emb|CAM11404.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853683|emb|CAM11566.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853732|emb|CAM11655.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
 gi|171854145|emb|CAM12137.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 74/287 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  V      +L                 + DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  T                       N+   
Sbjct: 52  LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395
           +L  +               IVL +   F     S  S+  +  L  +   I +I++LP 
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178

Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434
           D+F      + + I +    K          +     IN+++ +   
Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225


>gi|260205309|ref|ZP_05772800.1| hypothetical protein MtubK8_13497 [Mycobacterium tuberculosis K85]
 gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tuberculosis K85]
 gi|289539134|gb|EFD43712.1| helicase [Mycobacterium tuberculosis K85]
          Length = 1606

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAMMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 VNDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|222083249|ref|YP_002542652.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738629|gb|ACM39467.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1697

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 69/274 (25%), Gaps = 60/274 (21%)

Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             + +  E  +    + S          TP  ++    +                   + 
Sbjct: 145 DDLGSSLETAVSESDYSSLSRCTQYAHFTPEFIIRAIWS--------GLLRMGWRGGRVL 196

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P  GTG F               +        G EL+P T  +                
Sbjct: 197 EPGIGTGLFPALMPE---------EYRDTSYVTGIELDPVTARIAR------------LL 235

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I  G     DL     +   + NPPF  +  +                       
Sbjct: 236 QPKSRIITGDFARTDL--SAIYDLAVGNPPFSDRSVRSDRQYRALGLRLHDY-------- 285

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+    + L+     G  AA V S   +        ++  R  + ++  + A 
Sbjct: 286 -------FIARSIDLLKP----GALAAFVTSHGTM-----DKADTTAREHIAKSADLIAA 329

Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           + LP   F     T++   +     RK  E  G 
Sbjct: 330 IRLPEGSFRRDAGTDVVVDILFFRKRKAGEPEGD 363


>gi|197294766|ref|YP_001799307.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171854093|emb|CAM12073.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 83/286 (29%), Gaps = 72/286 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     ++      TP  V      +L                 + DP  G G  
Sbjct: 1   MYRVDRNNFFKNKKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  T                       N+   
Sbjct: 52  LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTRKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL-LENDLIEAIVALPTD 396
           +L  +               IVL +   F         +++++L  E   I +I++LP D
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLNQSLNSKQLQKFLNQEYPEISSIISLPKD 179

Query: 397 LFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434
           +F      + + I +    K          +     IN+++ +   
Sbjct: 180 VFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225


>gi|313126295|ref|YP_004036565.1| type i restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
 gi|312292660|gb|ADQ67120.1| type I restriction-modification system methyltransferase subunit
           [Halogeometricum borinquense DSM 11551]
          Length = 1250

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
           F+ +      V   ++ ++Y+   R F  E  +   +F TP+ V+      +        
Sbjct: 379 FNVLRFDFQDVEGDLLGDLYQ---RYFDPETRKALGEFYTPQPVIDYIMDGVGYERGVS- 434

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
                    L DP+CG+G FL +A+        + +  P    H
Sbjct: 435 ------NERLIDPSCGSGTFLVEAVERYITDVENFEDNPDWEEH 472


>gi|94265472|ref|ZP_01289222.1| hypothetical protein MldDRAFT_4858 [delta proteobacterium MLMS-1]
 gi|93454014|gb|EAT04355.1| hypothetical protein MldDRAFT_4858 [delta proteobacterium MLMS-1]
          Length = 204

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHK---IPPILVPHGQELEPETHAVCVAGMLIRRL 264
            L DP  GTGGFL  A +H+ +     +           G ++  E   +C   + +  L
Sbjct: 117 KLSDPAYGTGGFLLAAYDHMKNQSQDRERLRALRHTAFSGLDIVDEVVRLCAMNLYLHGL 176


>gi|315656027|ref|ZP_07908925.1| methylase [Mobiluncus curtisii ATCC 51333]
 gi|315490091|gb|EFU79718.1| methylase [Mobiluncus curtisii ATCC 51333]
          Length = 951

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 50/211 (23%), Gaps = 60/211 (28%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL----------DPDDA 197
             +   +   I+E  +     E         T    +H     L             D  
Sbjct: 299 SQISPTIFGGIFESTL---NPETRRAGGMHYTDPANIHKVIDPLFLDDLKAELQAINDAE 355

Query: 198 LFKESPGMIR-----------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239
                    R              DP  G+G FLT+    +                   
Sbjct: 356 GLTPRQRTNRYRAFHERLCSLRFLDPASGSGNFLTETYLQLRHLEDEVLSRLNAGQTAFS 415

Query: 240 -------------LVPHGQELEPETHAVC---------VAG----MLIRRLESDPRRDLS 273
                           +G E+      V           A     ML+   + D     S
Sbjct: 416 LAEAGASVTRVSLDQFYGIEINDFAVKVAEAALWISRLKANGETAMLLALGDDDFPLRES 475

Query: 274 KNIQQGSTLSKDL---FTGKRFHYCLSNPPF 301
            +I Q + L+ D        + +Y L NPPF
Sbjct: 476 AHIVQANALTVDWNTVLPADQCNYVLGNPPF 506


>gi|329666726|gb|AEB92674.1| putative restriction endonuclease [Lactobacillus johnsonii DPC 6026]
          Length = 1562

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 67/240 (27%), Gaps = 31/240 (12%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             + S +   I   F         E+    Y   K  +    +       ++  +Y    +
Sbjct: 783  NAVSKSMNDIISAFKMFGFAKEQEQLKPFYDSVKLRASGIDNIQGKQTFII-QLYNSFFK 841

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDA 223
                 V+E      TP +VV      +    +  F K        + DP  GTG F+T  
Sbjct: 842  TAFPRVTESMGIVFTPVEVVDFIIHSVDWALNKYFGKSLASKNVHILDPFTGTGTFITRT 901

Query: 224  MNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRRDLS 273
            + ++       K          +   H  E+   ++ +    +          D      
Sbjct: 902  LYYLKQQMDEGKITYDDILRKYMHELHANEIVLLSYYIAAINIEAVFDEVNGPDRGYKPF 961

Query: 274  KNIQQGS---------TLSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
              I             TL  D+F                  +SNPP+  + + + D  E 
Sbjct: 962  DGIVLTDTFESTERESTLDDDMFGTNNERLRKQQETPITAIISNPPYSGRQKNENDENEN 1021


>gi|189459596|ref|ZP_03008381.1| hypothetical protein BACCOP_00222 [Bacteroides coprocola DSM 17136]
 gi|189433678|gb|EDV02663.1| hypothetical protein BACCOP_00222 [Bacteroides coprocola DSM 17136]
          Length = 615

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 123/413 (29%), Gaps = 78/413 (18%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN--- 99
            ++  +E     + E+   +  SN                 SE  L+T        N   
Sbjct: 1   MIDGLIELENDLIAEECEKYKSSNR---------------ISEQDLNTETVAALAENVHS 45

Query: 100 --LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM-- 155
             + S I +F    K + +  + S +   L      Y +   F   E+ P    +  +  
Sbjct: 46  FLINSLIYTFLYQ-KKLLDSVEISGSYGFLPDGE--YSLYTQFPA-EVIPSLCEELHIVF 101

Query: 156 ---------SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                      +Y    R+             T   V +      L   DA      G  
Sbjct: 102 LNAVIERKNGLVY----RKKSKHNLIDKGAVYTRSYVAYEIVKNTLSRCDA------GAD 151

Query: 207 RTLYDPTCGTGGFLTDAMNHV-ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            ++ D  CGTG F    ++ +  +     +   +      +++P   A+     L R  E
Sbjct: 152 VSVLDFACGTGRFYDCIVDILDKEYAIPPEKSILNNIFAVDIDPVAVAITRMKALARLKE 211

Query: 266 SDPRRDLS--KNIQQGSTL--SKDLFTGKR--------------FHYCLSNPPFGKKWEK 307
                      NI + + L     +F+ +               F   +SNPP+      
Sbjct: 212 PSVSDIEKICGNIIRRNALIQENIMFSDECPLKNSDFEGKVNGGFDVIVSNPPYLVLKPD 271

Query: 308 DKDAVEKEHKN----GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
            K     +           R         +G +        K+       G   ++   S
Sbjct: 272 KKKISGNKADRILMWVSWFRTSGAYHYALEGMLNLYQLSIEKMIRMLKRNGYLGVICP-S 330

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIV----ALPTDLFFRTNIATYLWILSN 412
            LF   A    +++R++LLE + +  I     ++P  LF     +T ++ L  
Sbjct: 331 TLF---ADLSTTKLRKFLLEKNKVCEIKYFRESIP--LFDNVTQSTNIFYLQR 378


>gi|281358272|ref|ZP_06244755.1| type III restriction protein res subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281315362|gb|EFA99392.1| type III restriction protein res subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 1610

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 66/451 (14%), Positives = 130/451 (28%), Gaps = 98/451 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +   + + TP  ++     L+        +   G +  L     GTG F+  A
Sbjct: 109 EEYQTAQNSILDSYYTPEYIIDFMWDLVRQE----LEIKSGKVAELG---AGTGNFIGFA 161

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                                 E++  +  +                    +I+   +L 
Sbjct: 162 P-----------FQNAYEFTAVEVDKISGNIAKT------------LYPESDIRIA-SLE 197

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 +++   + N PFG+    D++       N                   F+    
Sbjct: 198 TVKLP-EQYDLVIGNVPFGRFAPYDRNYRSYNAWNLHNY---------------FIARAL 241

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
           + L+    G G A ++ SSS +    +    +  R  L++         LP + F  T I
Sbjct: 242 DCLK----GNGHAVLLTSSSTMDKPGSMPLVTNGRAGLVKAY------RLPNNTFAGTEI 291

Query: 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK 463
              + IL     E   G +Q ++  D                D  R + ++ Y ++    
Sbjct: 292 VADILILKKNYRETLSGNLQWVDTAD----------------DTGRIE-VNCYFAQHPEH 334

Query: 464 FSRMLDYRTFGYRRIKVLRPL----RMSFILDKTGLARLEADITWRKLSPLHQSFWLDIL 519
               L      Y RI     L     +    D      + A     + + L  +   +  
Sbjct: 335 VFGKLSNTGKMYGRINTPTVLPDGKSLKEHFDIARKEFMPALPEVPENTDLFGNALPEAT 394

Query: 520 KPMMQQIYPYGWAES-FVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVN 578
            P ++ I      +    KE  K+    ++        +   I+  G +      + D  
Sbjct: 395 TPKVEVISYAERTDIPEEKEPPKNCREYSIFSTLDA--VYQVIDGMGHR------LKDRK 446

Query: 579 GEWIPDTNLTEYENV--------PYLESIQD 601
           GE +    L E + V           E I+ 
Sbjct: 447 GENLT---LKETQKVHSFVKIKNALNELIEA 474


>gi|229814944|ref|ZP_04445282.1| hypothetical protein COLINT_01987 [Collinsella intestinalis DSM
           13280]
 gi|229809431|gb|EEP45195.1| hypothetical protein COLINT_01987 [Collinsella intestinalis DSM
           13280]
          Length = 851

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 62/175 (35%), Gaps = 18/175 (10%)

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
              PE      + ++              NI++ +   +     + F   ++NPP+    
Sbjct: 420 SPSPEDLGALKSELMRNLSGDLFVSHTQTNIERAANCCE--TLSRTFDVVVANPPYMGSG 477

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
                 + K  K            + SD   +F+  + N+ +      G A I  S+S +
Sbjct: 478 -NFNPFMSKWSKENYSS-------EKSDLCYMFIERIKNQRKHL----GYAGIAASNSWM 525

Query: 366 FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           F     S   + RR +LE   I  +V L    F       + +IL+NR    RRG
Sbjct: 526 F----LSSSEQSRRKVLEECNIITLVQLAQGGFKGIAAQVFAFILANRCDAPRRG 576



 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 31/144 (21%)

Query: 129 KAGLLYKICKNFSGIELH-------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +  +L+ +  +                   +  + + +    R+  +E    A    TP 
Sbjct: 191 EHDVLFHLVADIPEETWGDVEALGWMYQFYNSELKDAFFKSKRKAAAEDLAPATQLFTPD 250

Query: 182 DVVHLATA-------LLLDP-----------------DDALFKESPGMIRTLYDPTCGTG 217
            +V            +L +P                  +   +       T  DP CG+G
Sbjct: 251 WIVRYMVENSLGRLWMLNNPGSRLREDMAYFIEPDAQHEDFIRIEGPEDITFCDPACGSG 310

Query: 218 GFLTDAMNHVADCGSHHKIPPILV 241
             L  A + +    +        V
Sbjct: 311 HILVYAFSLLFKMYAERGYRERDV 334


>gi|83719870|ref|YP_440674.1| hypothetical protein BTH_I0114 [Burkholderia thailandensis E264]
 gi|83653695|gb|ABC37758.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 1231

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 29/197 (14%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +  +F+  E +        + ++Y+ L         E      TP  V        L 
Sbjct: 168 GSLVHDFADPEWNTRF-----LGDLYQDL----SEAARERYALLQTPEFVESFILDRTLT 218

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQ 245
           P   ++         L DPTCG+G FL  A   +A      +   +            G 
Sbjct: 219 PALDVYTLEE---VDLIDPTCGSGHFLLGAFERLAPRWLRKRPENVNLALQEALGRIAGI 275

Query: 246 ELEPETHAVCVAGMLIRRLES------DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           +L P   A+    +LI  L+           D   +++ G +L        +  Y  +  
Sbjct: 276 DLNPYAVAIARFRLLIAALKMASVKKLRLAPDFHLHVETGDSLL---HGFDQRDYAGAQV 332

Query: 300 PFGKKWEKDKDAVEKEH 316
                  ++  A   +H
Sbjct: 333 SLALDTPQENLAAVADH 349


>gi|138896441|ref|YP_001126894.1| hypothetical protein GTNG_2804 [Geobacillus thermodenitrificans
            NG80-2]
 gi|134267954|gb|ABO68149.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
            NG80-2]
          Length = 1586

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 86/300 (28%), Gaps = 34/300 (11%)

Query: 111  AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV 170
               I E+         LEK    Y+  +  +   +       +V+  +Y+   R    ++
Sbjct: 788  VLDILEEHALWKETESLEK---FYESVRTRAS-GIDNAEGKQKVIVELYDKFFRTAFPKM 843

Query: 171  SEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            ++      TP +VV        D     F          + DP  GTG F+   +     
Sbjct: 844  TDRLGIVYTPVEVVDFILKSADDVLQEEFGMRLSDEGVHILDPFTGTGTFIVRLLQSGLI 903

Query: 230  CGSHHKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPRRDLSKNIQQG--- 279
                         H  E+    + +           +  +  E  P   L+   + G   
Sbjct: 904  RPEDLARKYRNELHANEIVLLAYYIAAINIEEAYHRLSGQDYEPFPGIVLTDTFRLGEDK 963

Query: 280  STLSKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
             TL++ +F            +     + NPP+      + D  +    +    R      
Sbjct: 964  DTLAETMFPENNERIIRQNRQEIRVIVGNPPYSAGQGSENDNNQNLKYDRLDQRIADTYA 1023

Query: 330  KISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
              S   +   L+  ++             G  A V + S + +         +R+ L E 
Sbjct: 1024 ASSKAVLKKGLYDSYIRAIRWASDRIGDQGVIAFVTNGSFIDSNTTDG----LRKCLAEE 1079


>gi|28378841|ref|NP_785733.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum WCFS1]
 gi|254557047|ref|YP_003063464.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum JDM1]
 gi|28271678|emb|CAD64584.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum WCFS1]
 gi|254045974|gb|ACT62767.1| type I restriction-modification system methyltransferase subunit
           (putative) [Lactobacillus plantarum JDM1]
          Length = 336

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 80/255 (31%), Gaps = 40/255 (15%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                MTP  +  L   L+                ++ D   GTG  LT  +N +     
Sbjct: 94  DPNHQMTPDSIGLLTAYLIAK------LVGSTTDLSILDIAVGTGNLLTTVINQLQT--- 144

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               P  +  +G + +    A+    M ++R   +     +           D     + 
Sbjct: 145 --DRPRPIQGYGVDNDDNQLAIAAMSMDLQRSAVELFHQDAI----------DPLVMPKT 192

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + + P G     D+               G      +  S +  + +   +     G
Sbjct: 193 TVVIGDLPVGYYPLDDRVQ-------------GFQTKATNGHSYIHHLMMEQAMAHLLPG 239

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           G    + L  + +F  +   G   + +W+     ++ ++ LPT+LF        + +L  
Sbjct: 240 G--WGVFLVPTTIFQSQESQG---LLKWMSTAAYLQGLLNLPTNLFLDEKSRKSIVVLQK 294

Query: 413 R-KTEERRGKVQLIN 426
             +   + GKV L +
Sbjct: 295 HGQRAHQAGKVLLGD 309


>gi|67920387|ref|ZP_00513907.1| type I restriction enzym, M protein [Crocosphaera watsonii WH 8501]
 gi|67857871|gb|EAM53110.1| type I restriction enzym, M protein [Crocosphaera watsonii WH 8501]
          Length = 77

 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPP 300
            HG + +     +    M++  +           I+   +LS+   +  + F   L+NPP
Sbjct: 2   FHGFDFDGTMLRIGSMNMMLHGI-------QDPKIEAKDSLSEKSGYVDEAFSLILANPP 54

Query: 301 FGKKWEK 307
           F    EK
Sbjct: 55  FKGSIEK 61


>gi|332289620|ref|YP_004420472.1| Eco57I restriction endonuclease [Gallibacterium anatis UMN179]
 gi|330432516|gb|AEC17575.1| Eco57I restriction endonuclease [Gallibacterium anatis UMN179]
          Length = 1426

 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/404 (11%), Positives = 113/404 (27%), Gaps = 79/404 (19%)

Query: 92   GSTNTRNNLESYIASFSDNA--------KAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
                  +++ S +  FS                  +F   +       +     + F  +
Sbjct: 850  KQHQVEDDIRSRLRGFSRTIPSFLMAYGMENISLANFDEIVDDDVFKEVTGISLEQFRQL 909

Query: 144  ELHPDTVPDRVMSNIYEHLIRR---FGSEVSEGAED-------------FMTPRDVVHLA 187
                    + V +   +  + +         E  E+               TP+ VV + 
Sbjct: 910  RDKYQFFDENVFNESVKEFLAKRTALADYFDETLEEDIFDYIPPQKTNQIFTPKKVVKMM 969

Query: 188  TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD--------AMNHVADCGSHHKIPPI 239
               L      +F +   M +T  D    +G FLT+            + D     K    
Sbjct: 970  LDKLEQECPDIFTD---MHKTFADLYMKSGLFLTEIVKRLYKGLEKEIPDKTERLKHIIE 1026

Query: 240  LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS--------TLSKDLFTGKR 291
               +G       + +      +   E    +   KNI               ++L    +
Sbjct: 1027 KQIYGFAPSEIIYRIARN--FVLGFEQGILQIEGKNIICQDLTDCAMGKKSIEELGEKMK 1084

Query: 292  FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
            F   + NPP+ +  + +       +                               L   
Sbjct: 1085 FDVVVGNPPYQENAKGESTKDMPIYHYFYD--------------------------LAEK 1118

Query: 352  GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV--ALPTDLFFRTNIATYLWI 409
             G +  ++  +  LFN  AGS +    + +L ++ ++ +       ++F  T+I   + +
Sbjct: 1119 VGTKYCLISPARFLFN--AGSTDKSWNQKMLNDEHLKVVYYNQKSDEVFVGTDIKGGVAV 1176

Query: 410  LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            L    + +    + +     ++  + +   K   +      +I+
Sbjct: 1177 LFRDNS-KIFDPIGIF---TVFEELNSIIHKVEKLTARTIDEIV 1216


>gi|226228126|ref|YP_002762232.1| hypothetical protein GAU_2720 [Gemmatimonas aurantiaca T-27]
 gi|226091317|dbj|BAH39762.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 1105

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 42/188 (22%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD-----VVHLAT 188
           Y+   +          V   ++   +E L+    +E    +  F TP       +    T
Sbjct: 322 YRFTAHEDSTSWSEAAVDPEMLGRAFESLM---AAEDRRRSGAFYTPPHLVDAAISEALT 378

Query: 189 ALLLDPDDALFKESPGMIRT---------------LYDPTCGTGGFLTDAMNHVADCGSH 233
           ALL     A+ +ES     +               + DP CG+G FL  A+         
Sbjct: 379 ALLPSIPAAVLEESSNAPLSAEAAFTITHRLACLRVLDPACGSGAFLVRALERFDTLLKR 438

Query: 234 HKIPPILV----------PHGQELEPETHAVCVAGMLI------RRLESD---PRRDLSK 274
                               G + +P    +C   + +         + D   P  +L  
Sbjct: 439 AGDQRPAHERRRALLTLGIFGVDRDPMAVWLCELRLWLAVVIECHDPDIDRIAPLPNLDH 498

Query: 275 NIQQGSTL 282
           +I+ G +L
Sbjct: 499 HIRIGDSL 506


>gi|28211851|ref|NP_782795.1| modification methylase bstVI [Clostridium tetani E88]
 gi|28204293|gb|AAO36732.1| modification methylase bstVI [Clostridium tetani E88]
          Length = 601

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 95/310 (30%), Gaps = 35/310 (11%)

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE--HLIRRFGS-EVSEGAEDFMTP 180
           I  L+    LY +             +         +   LIR F    + +      T 
Sbjct: 22  INFLKDIEDLYNVIVQPIDNIYKNTALESCRKKYNLKKNELIRDFYILNIEKKNGVVYTT 81

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----SHHKI 236
            ++ +      +  +D            + DP+ G G  +    +++ +           
Sbjct: 82  EEISNYLVKNTIKKED----IINNPYIKIIDPSSGCGNIIFAIFDYLINIYVKSLDEINK 137

Query: 237 PPILVPHGQEL-----EPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTLSKDLFT 288
              L    + +     +   H + +    ++ L  D     +    NIQ    L+ D+  
Sbjct: 138 KNNLELSMENIKNHIVKNNLHVIDIDNFALKILVIDFFYKNNIIFSNIQNKDFLTDDI-- 195

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             +F+  + NPP+          +EKE+       +G      SD S  F     +K + 
Sbjct: 196 EGKFNIFIGNPPYIG-----HKDIEKEYFKNIKENYGEIYINKSDLSYCFFKGSFDKGKD 250

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PTDLFFRTNIATYL 407
                 +   + S   L    + SG   +R+++  N  I  IV       F    I   +
Sbjct: 251 ----NCKITFITSRYFL---ESESG-KNLRKYIANNFYINRIVDFYGIRPFKNVGIDPCI 302

Query: 408 WILSNRKTEE 417
             L+ +    
Sbjct: 303 IFLTKKDKNN 312


>gi|255027628|ref|ZP_05299614.1| type II restriction enzyme, methylase subunit [Listeria
           monocytogenes FSL J2-003]
          Length = 378

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 72/238 (30%), Gaps = 60/238 (25%)

Query: 118 FDFSSTIARLE---KAGLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIRR------- 165
           FDF   I  LE    + ++ +I     F         V   ++S IYEH + R       
Sbjct: 75  FDFLEDILSLEVQIDSNVIIEIFNELYFPQSPYDFSVVDSTILSQIYEHFLSRRIIINED 134

Query: 166 --F----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             F      EVS  +    TP+ +V       L P  A           + D  CG+G F
Sbjct: 135 RTFSLIEAPEVSASSGVVSTPKIIVEQIVHETLTPLVADKSFDELNQLKIADICCGSGTF 194

Query: 220 LTDAMNHVADCG---------------------------SHHKIPPILVPHGQELEPETH 252
           L  A + + +                                +        G ++ P   
Sbjct: 195 LISAYDFIIEKKMERYIKELKNDSNLVYRMNDNEIVFTLKAKREILENNIFGGDINPYAV 254

Query: 253 AVCVAGMLIRRLESDPRRDLSK---------------NIQQGSTLSKDLFTGKRFHYC 295
            V    +L++ LE +    ++                NI+ G++L  + F     +  
Sbjct: 255 EVTEFSLLLKLLEGENESTINDFIQCHDERVLPNLKSNIRCGNSLVDNKFYDFMPNVL 312


>gi|229106045|ref|ZP_04236664.1| hypothetical protein bcere0019_51690 [Bacillus cereus Rock3-28]
 gi|228677364|gb|EEL31622.1| hypothetical protein bcere0019_51690 [Bacillus cereus Rock3-28]
          Length = 499

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 109/352 (30%), Gaps = 48/352 (13%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           ++ E  + + TP D+    +++  +               + DP CG G      +  + 
Sbjct: 24  QLKEKNDQYFTPIDIADFMSSMFKEVKKNEIN--------ILDPGCGIGNLTAALIFKIC 75

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGS----TLS 283
           +     + P  +     E++          +L ++ L  D    L+  I+        L 
Sbjct: 76  NWK---RKPRAINIELYEVDDTLSDKLDENLLDLKNLCKDKGITLNVKIKYTDFIYAGLK 132

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           K   +  RF Y + NPP+ +K   D +      + G                  F+    
Sbjct: 133 KINESESRFDYIILNPPY-RKLNSDSNHKRALLQAGIDVPNHYA---------AFIAIAN 182

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA--IVALPTDLFFRT 401
             L+      G+   ++  S        S     R  L+ +  I+   I     DLF+  
Sbjct: 183 KLLKNK----GQLVCIVPRSFCSGAYFKS----FREALIMHTKIDRIHIFKSRKDLFYDE 234

Query: 402 NIATYLWILSNRKTEERRGKVQLINA--TDLWTSIRNEGKKRRIINDDQRRQILDIYV-- 457
            +   + +   + T++   K+Q+  +   D   + R   +   ++      +I+ I    
Sbjct: 235 VLQETIILSLFKDTQKYNDKIQITESLKNDFAETKRTFKRFDNVVFPTDTEKIIRIIHTT 294

Query: 458 --SRENGKFSRMLDYRTFGYRRIK------VLRPLRMSFILDKTGLARLEAD 501
             +  +   S        G             +P  + F  D      +  D
Sbjct: 295 DKAIVDKMHSLPCVLSDLGISVSTGPIVDFREKPESLRFEADFWSYPMIYQD 346


>gi|33323519|gb|AAQ07489.1|AF503408_13 DarB [Enterobacteria phage P7]
          Length = 2255

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 120/384 (31%), Gaps = 74/384 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 89  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+ +      F +
Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAINT-PNDSFDH 176

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++ + L ++         ++               E      +   +
Sbjct: 273 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319

Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             G++ RI+V    ++     K   + R E+ I W  L     S   D++     ++   
Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMRLING 379

Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553
            W +      I+++  K LK+ A+
Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403


>gi|206603352|gb|EDZ39832.1| DNA methyltransferase/helicase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 1067

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 87/273 (31%), Gaps = 54/273 (19%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L  L S     +L+  IA   D+   +    D  S             I K+F   E   
Sbjct: 247 LRKLFSHMAGPDLDDRIAWIVDDLAELLNKSDMPS-------------ILKDFGKGEGKE 293

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D V        YE  +  +  ++ E    + TP  VV      +       FK   G+  
Sbjct: 294 DPVVHF-----YETFLSHYDPKMRELRGVYYTPEPVVSYIVRSVDRILKETFKLKDGLAD 348

Query: 208 ------------------TLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILV 241
                              + DP  GTG FL + +  +++    +K           +  
Sbjct: 349 NTKTDIREGKQKIETHRVHVLDPATGTGTFLYEVIRQISESFKGNKGLWPGYVSDHLLPR 408

Query: 242 PHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
            HG EL    +A+     G+ ++RL  D R +    +   +T+ +D           S  
Sbjct: 409 IHGFELLMAPYAIAHLKLGLELKRLGYDFRSEERLGVYLTNTM-EDPHP-------FSGA 460

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           P   +W  ++  +  + K         G P  S
Sbjct: 461 PLFMRWLAEETNIADKVKRKHPIMVVLGNPPYS 493


>gi|160945895|ref|ZP_02093121.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii
            M21/2]
 gi|158443626|gb|EDP20631.1| hypothetical protein FAEPRAM212_03428 [Faecalibacterium prausnitzii
            M21/2]
          Length = 2701

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 56/391 (14%), Positives = 111/391 (28%), Gaps = 79/391 (20%)

Query: 49   EPTRSAVREKYLAFGGSNIDLESF--VKVAGYSFYNTSEYSLST------LGSTNTRNNL 100
            E T   V +++      N + ++F   + A  + Y   + +L        +   +     
Sbjct: 983  EKTLDEVLDEHPVSIPVNGEWQTFPNARAAEEAAYGEYKENLRRTAENFRITDDHLGEGG 1042

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNI 158
                   + NA  + ++ +F +  A  E+  +L +        +   +T  +       +
Sbjct: 1043 AKAKFRANMNAINLLKELEFDNRQATPEEQEILSRYVGWGGLADAFDETKENWSSEFQEL 1102

Query: 159  YEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            Y  L    + +          T   V+      +                 + +P+CG G
Sbjct: 1103 YTTLSPEEYAAARGSTLNAHYTSPTVIKAIYEAVG--------RMGFETGNILEPSCGVG 1154

Query: 218  GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDL 272
             F      ++A              +G EL+P +  +       A + +   E+  RRD 
Sbjct: 1155 NFFGMLPENMAGSK----------LYGVELDPISGRIAKQLYPKADITVAGFETTDRRDF 1204

Query: 273  SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                               +   + N PFG+    DK   +                   
Sbjct: 1205 -------------------YDLAVGNVPFGQYQVNDKAYNKLNFNIHNY----------- 1234

Query: 333  DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
                        K       GG  A V            + +S +RR+L +   +   + 
Sbjct: 1235 ---------FFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIR 1280

Query: 393  LPTDLF-FRTNIATYLWILSNRKTEERRGKV 422
            LP D F           I+  +K +     V
Sbjct: 1281 LPNDAFKKNAGAEVVSDIIFLQKRDRPLDIV 1311


>gi|317014089|gb|ADU81525.1| hypothetical protein HPGAM_03455 [Helicobacter pylori Gambia94/24]
          Length = 1198

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/313 (15%), Positives = 90/313 (28%), Gaps = 43/313 (13%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +N+++ IA   D       D         L+    LY+  K  +       +  +  + 
Sbjct: 386 GDNIQNPIAKALDKMVLKLSDLGLEGETKDLKN---LYESVKTEAARAKSQKSQQEL-IK 441

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
           N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 442 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQNITIFDPFTG 501

Query: 216 TGGF----LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           TG F    L+   + ++D     K          ++   ++ + +  +       D    
Sbjct: 502 TGSFIARLLSKENDFISDEALKEKFQKG--LFAFDIVLLSYYIALINITQAAQNRDSSLK 559

Query: 272 LSKNIQQGSTLSK----------DLFT-----------------GKRFHYCLSNPPF--G 302
             KNI    +L              F                   +     + NPP+  G
Sbjct: 560 NFKNIALTDSLDYLEEKSDKGVIPGFEYLFADLKENKEIKNTVTEQNIRVIIGNPPYSSG 619

Query: 303 KKWEKDKDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
            K E D +   K  K  +      G     K    +   L+H            G    V
Sbjct: 620 AKSENDNNQNLKHPKLEKKVYETYGKNSTAKTGKTTRDALIHSIRMASDLLKDKGVLGFV 679

Query: 360 LSSSPLFNGRAGS 372
           ++ S + +  A  
Sbjct: 680 VNGSFIDSKSADG 692


>gi|72161375|ref|YP_289032.1| DNA methylase [Thermobifida fusca YX]
 gi|71915107|gb|AAZ55009.1| putative DNA methylase [Thermobifida fusca YX]
          Length = 1222

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 22/141 (15%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK-- 200
            +        R + ++Y+ L      ++ E    F TP  V        L+P    F   
Sbjct: 182 HDFTDPDWNTRFLGDLYQDL----SEDIRENYALFQTPEFVEEFILDYTLEPAIDEFGLD 237

Query: 201 -------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHG 244
                  ++      L DPTCG+G FL  A + +                        HG
Sbjct: 238 GQGGRVYQANSQGFRLIDPTCGSGHFLIGAFHRILARWREAAPGASDWDLIARTLRSIHG 297

Query: 245 QELEPETHAVCVAGMLIRRLE 265
            +  P   A+    +LI  ++
Sbjct: 298 VDKNPYAVAIARFRLLIAAMK 318


>gi|307700181|ref|ZP_07637224.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307614640|gb|EFN93866.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 621

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 65/228 (28%), Gaps = 31/228 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++  YE L+    S     A  F TP D                 +     + T  DP 
Sbjct: 156 EIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMA----------VQSRDFPVGTWLDPC 205

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRR 270
           CG G        H+    S+            +++       VA +    +   + +   
Sbjct: 206 CGVGNL----AWHLVVAQSNPARFVRENLVLIDVDETALRSAVALLGADFLSGGDHEGLA 261

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            L         LSK         + + NPP+ +   K+   +E          F   + K
Sbjct: 262 QLWAKASNRDFLSKSGLAP--HEFVIVNPPYAR--AKESPGLECAASREYFAYFLEKIAK 317

Query: 331 ISDG-------SMLFLMHL--ANKLELPPNGGGRAAIVLS-SSPLFNG 368
            S G       S L +        +      GGR  +  +    LF G
Sbjct: 318 TSRGFIAVTPASYLCVPKFAVLRGILEREQPGGRVFVFDNVPDTLFRG 365


>gi|159186358|ref|NP_355767.2| hypothetical protein Atu4892 [Agrobacterium tumefaciens str. C58]
 gi|159141492|gb|AAK88552.2| hypothetical protein Atu4892 [Agrobacterium tumefaciens str. C58]
          Length = 697

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 52/247 (21%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----- 241
             +        L  +       + DP  G G FL  A   +       +           
Sbjct: 1   MVSAAFRG---LNAQGISAAARILDPAAGAGVFLLAAFRELVAARWRSEGHRPDTAALRE 57

Query: 242 -----PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS---------------- 280
                  G ++       C  G+ +  +E DP       +                    
Sbjct: 58  ILYKQVRGFDINEAALRFCALGLYLLSIELDPNPKPVDKLHFDDLRGVVLHRPVDTTDVD 117

Query: 281 -----------TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA-VEKEHKNGELGRFGPGL 328
                      +L  +     ++   + NPP+      +    +  E       R G G+
Sbjct: 118 RPEAKQLGSLGSLIGEEH-DGQYDLVIGNPPWASATGLEDWNLLLTEVHKIARSRLGDGI 176

Query: 329 --PKISDG--SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             P + +    + F+       +            L +  LF      G    R+ LLE 
Sbjct: 177 TAPPLPNAVLDLPFVWRAMRWAKPDAQ----IIFALHARFLFQQG--DGMPLARQSLLEA 230

Query: 385 DLIEAIV 391
             + +I+
Sbjct: 231 MDVTSII 237


>gi|148359877|ref|YP_001251084.1| protein methyltransferase HemK [Legionella pneumophila str. Corby]
 gi|296107927|ref|YP_003619628.1| HemK protein [Legionella pneumophila 2300/99 Alcoy]
 gi|148281650|gb|ABQ55738.1| protein methyltransferase HemK [Legionella pneumophila str. Corby]
 gi|295649829|gb|ADG25676.1| HemK protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 287

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168
            + F   +   +LE   LL  +        F+    HPD +        Y  +I++    
Sbjct: 12  LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67

Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
                  G  +F +           PR        L L+              ++ +   
Sbjct: 68  LPIAYITGQREFWSLSLKVTPNVLIPRHETERLVELALELIPD------KENVSVLELGT 121

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G                 K  P+      +   E   +         L          
Sbjct: 122 GSGAIALAL----------AKERPLWHIDACDFSKEALELARYNAKTLGLN--------- 162

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           NI    +   +    K++H  +SNPP+  +           H      RF P    +S  
Sbjct: 163 NINFCHSYWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKKGDVRFEPTSALVSSQ 214

Query: 335 S-MLFLMHLANKLELPPNGGG 354
             +  L ++           G
Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235


>gi|328541568|ref|YP_004301678.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
 gi|326415710|gb|ADZ72772.1| Methyltransferase type 11 [Polymorphum gilvum SL003B-26A1]
          Length = 1713

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 72/274 (26%), Gaps = 60/274 (21%)

Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             + +  E  +    + S          TP  ++    +          +        + 
Sbjct: 155 DDLGSSLESAVSESDYSSLSRCTQYAHFTPEFIIRAIWS--------GLQRLGWRGGRVL 206

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P  GTG F               +        G EL+P T  +                
Sbjct: 207 EPGIGTGLFPALMPE---------EYRDSSYVTGVELDPVTARIVK------------LL 245

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I +G     DL     +   + NPPF  +  +                       
Sbjct: 246 QPKARIIEGDFARTDLSP--IYDLAIGNPPFSDRIVRSDRQYRSLGLRLHDY-------- 295

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+    + L+     G  AA V SS  L        +S  R  + ++  + A 
Sbjct: 296 -------FIARSIDLLKP----GAFAAFVTSSGTL-----DKADSTAREHIAKSADLIAA 339

Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           + LP   F     T++   +     RK  E  G 
Sbjct: 340 IRLPEGSFRRDAGTDVVVDILFFRKRKAGEAEGD 373


>gi|308184456|ref|YP_003928589.1| hypothetical protein HPSJM_03400 [Helicobacter pylori SJM180]
 gi|308060376|gb|ADO02272.1| hypothetical protein HPSJM_03400 [Helicobacter pylori SJM180]
          Length = 947

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 86/314 (27%), Gaps = 48/314 (15%)

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            +N+++ IA   D                 L+    LY+  K  +       +  +  + 
Sbjct: 138 GDNIKNPIAKALDKMVLKLSSLGLEGETKDLKN---LYESVKTEATHAKSQKSQQEL-IK 193

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
           N+Y    +    + SE      TP +VV                 +      T++DP  G
Sbjct: 194 NLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTG 253

Query: 216 TGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           TG F+   ++   D  S    K          ++   ++ + +  +       D      
Sbjct: 254 TGSFIARLLSKENDLISDEALKEKFQKNLFAFDIVLLSYYIALINITQAAQNRDSSLKNF 313

Query: 274 KNIQQGST--------------LSKDLFTGK---------RFHYCLSNPPF--------- 301
           KNI    +              L +DL   K              + NPP+         
Sbjct: 314 KNIALTDSLDYLEEKTNKGVLPLYEDLKENKDIKTTMEKQNIRVIIGNPPYSSGAKSENN 373

Query: 302 ---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
                   K +  V +++      R      + +      L              G    
Sbjct: 374 NNQNLSHPKLEKRVTEKYGKNSTSRSVGKTTRDT------LTQSIRMASDVVKDKGVLGF 427

Query: 359 VLSSSPLFNGRAGS 372
           V++ S + +  A  
Sbjct: 428 VVNGSFIDSKSADG 441


>gi|148262245|ref|YP_001228951.1| hypothetical protein Gura_0162 [Geobacter uraniireducens Rf4]
 gi|146395745|gb|ABQ24378.1| hypothetical protein Gura_0162 [Geobacter uraniireducens Rf4]
          Length = 1016

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 116/400 (29%), Gaps = 62/400 (15%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAK-AIF---EDFDFSSTIARLEKAGLLYKI------ 136
           +L  L   N   NL S       N    IF     FD  +    L  AG L  +      
Sbjct: 197 TLEQLLDENDPENLNSLFEKLHGNFNGDIFFAPCAFDGEAKAPVL-NAGHLRSLAEFRKG 255

Query: 137 -CKNFSGI----ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
                +G       +   +P  ++S IY   +        + +  F TP  +  L    L
Sbjct: 256 GVDKTTGQGRFWPYNFKYIPVELISAIYNRFLGD-RPVERKVSGAFYTPHFLADLTVNQL 314

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD--CGSHHKIPPIL--------V 241
            +      +       T+ DP CG+  FL      + +     H    P           
Sbjct: 315 WEELTPAIRS--SQDFTVLDPACGSAIFLVRIFQRMVEDWRFLHPGGTPDWDTLVAIVER 372

Query: 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-------------- 287
            +G + E     + +  + I  LE +        +     L   LF              
Sbjct: 373 LNGWDKETSAVRIGIFSLYIALLE-EVEPAAILKLLAERKLLPPLFRKTMCDRDFFGKDT 431

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              +F     NPP+  + E    +  +  K  EL           + +  F+       +
Sbjct: 432 PNTKFDLVFGNPPWVSRKEDQVVSATEWCKAHELPM------PAKELAWAFVWKSIQHTK 485

Query: 348 LPPNGGGRAAIVLSS-SPLFNGRAGSGESEIRRWLLENDLIEAIVALPT---DLFFRTNI 403
                 G   ++L +   L N    S   + R   L+  L+  ++        LF     
Sbjct: 486 SE----GMIGLLLPAMGVLLNHSEPSI--QARGLWLKQVLLSKVINFSDICFLLFDGAKR 539

Query: 404 ATYLWIL--SNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
            T L I   S++K  + R       A  L    R     R
Sbjct: 540 PTALCIFRPSDKKLSDYRFDYWCPKADPLLQQTRMLTLNR 579


>gi|259417375|ref|ZP_05741294.1| type II restriction enzyme, methylase [Silicibacter sp. TrichCH4B]
 gi|259346281|gb|EEW58095.1| type II restriction enzyme, methylase [Silicibacter sp. TrichCH4B]
          Length = 1277

 Score = 47.3 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 82/325 (25%), Gaps = 81/325 (24%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG----------------------M 205
               +    + TP  VV       +       K + G                       
Sbjct: 470 ESKRKRDGVYYTPEWVVERIVDETVGRRLTDLKAACGWPSEKQNKLPTLEVIDAYEAELR 529

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADC---------------------GSHHKIPPILVPHG 244
              + DP CG+G FL   + ++ D                       +  +       +G
Sbjct: 530 DIRIVDPACGSGAFLITTLAYLLDEWKALRDLRRQLGQKMAEEDWTDAAVREILRRNLYG 589

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTLSKDLF--------TGKR---- 291
            ++ P +  +    + +    SD       N I+ G++L    F          ++    
Sbjct: 590 VDINPASVEITKLALWLHTARSDKPLSSLDNHIRDGNSLIGPEFYNGLAPYNEDEKERIN 649

Query: 292 ----------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                           F   + NPP+ K     K   +           G        G+
Sbjct: 650 AFDWQAAFPGVFERGGFDAVVGNPPYVKLQNFRKVHADMAAFLKRDPEEGGVYHSTQTGN 709

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFN--GRAGSGESEIRRWLLENDLIEAIVAL 393
               +    K     N  GR   +  S    N  G    G  E  R L     I+     
Sbjct: 710 FDLYLPFIEKGIQLLNDDGRLGYIAPSVWQMNAYGAGLRGVVEAGRHLW--GWID----F 763

Query: 394 PT-DLFFRTNIATYLWILSNRKTEE 417
            +  +F    + T L   S    +E
Sbjct: 764 GSHQIFDEATVYTALMFFSKHPNDE 788


>gi|194468360|ref|ZP_03074346.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
 gi|194453213|gb|EDX42111.1| conserved hypothetical protein [Lactobacillus reuteri 100-23]
          Length = 277

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 44/267 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +  +IR+   + +       TP  +  +   L+              I+T++DP  GT  
Sbjct: 26  FLKVIRKDAIQANHQM----TPDTIGLIMAFLI------EKVTKIKEIKTIFDPAVGTAN 75

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            LT  MN +            +V +G + + +   V      ++ L        +     
Sbjct: 76  LLTTVMNQLK-----VNGDKDIVGYGIDNDEDMLEVASVSTELQHLNVKLYHQDAVT--- 127

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                       +    +S+ P G            E+      R   G    S    L 
Sbjct: 128 -------ALDIPQCDLAISDLPIGY-------YPLDENAKNYQTRAKEGH---SYVHHLL 170

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
           +    N L+      G   + L  S LF  +         +W+     ++ ++ LP +LF
Sbjct: 171 IEQSMNYLKP-----GAFGVFLVPSSLFQTKESQS---FVKWIQSVAYLQGLINLPAELF 222

Query: 399 FRTNIATYLWILSNRKTEERRG-KVQL 424
              N    + +L  +  + ++  KV L
Sbjct: 223 ANPNAQKSILLLQRQGGDSKQAVKVLL 249


>gi|161870452|ref|YP_001599624.1| hypothetical protein NMCC_1507 [Neisseria meningitidis 053442]
 gi|161596005|gb|ABX73665.1| conserved hypothetical protein [Neisseria meningitidis 053442]
          Length = 660

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 35/139 (25%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-----------------PILVPHGQELEPE 250
              DP CG G FL  A + +                            +   HG E++  
Sbjct: 88  QFLDPACGCGNFLIVAYDRIRALEDDIIAEALKDKTGGLFDSPSVQCRLKQFHGIEIDEF 147

Query: 251 THAVCVAGMLIRRLESDPRR---------------DLSKNIQQGSTLSKDLFTGKRFHYC 295
              +    M ++  + + R                +    I   ++L       +   Y 
Sbjct: 148 AVLIARTAMWLKNHQCNIRTQIRFDGEVACHTLPLEDVAEIIHANSLRTPW---QAADYI 204

Query: 296 LSNPPFGKKWEKDKDAVEK 314
             +PPF     + K+    
Sbjct: 205 FGDPPFIGSTYQTKEQKND 223


>gi|163867783|ref|YP_001608987.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
 gi|161017434|emb|CAK00992.1| helicase/methyltransferase [Bartonella tribocorum CIP 105476]
          Length = 1661

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 21/230 (9%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             S S   + I  + D +       +    Y   K  +     P    + ++  +YE    
Sbjct: 822  NSISQAMERILAELDKTDIKQESLELQGFYNSVKFRASGITEPQARQNLII-KLYEDFFS 880

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDA 223
            +   + ++      TP +VV      + D     F +S G    ++ DP  GTG F+T  
Sbjct: 881  KAFKKTTDRLGIVYTPVEVVDFIIHSVDDVLRNEFGKSLGSRGVSILDPFTGTGTFITRL 940

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-LSKNIQQGSTL 282
            +          +       H  E+    + +    +               K+I    T 
Sbjct: 941  LQSDLIKTEDMEYKFRNDIHANEIVLLAYYIAAINIESTYHSIMKGEYIPFKHIGLTDTF 1000

Query: 283  SK------------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                                +            NPP+    + + D  + 
Sbjct: 1001 RMLEEKNLLQKLFKENSEYLEHQKKLDIKVIFGNPPYSSGQKSENDNAKN 1050


>gi|116330229|ref|YP_799947.1| methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116123918|gb|ABJ75189.1| Methylase [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 545

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 83/256 (32%), Gaps = 33/256 (12%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              ++    F TP  V       +L           G+ R + DP  G G F    ++ +
Sbjct: 8   KNKNKFLGQFFTPERVAGFLVDWILG--AERITSQEGLKR-ILDPAIGNGIFFESVLDKL 64

Query: 228 ADCGSHH-KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
            +  +                    + +  A  ++   + D                   
Sbjct: 65  PNLDAEWVGFDLDAQCLSASRSALENRISKAS-ILSFYDRDFLL---------------Q 108

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              ++F   L NPP+    +       +E      G+    LP  ++  + FL+   N  
Sbjct: 109 KENQKFDAILCNPPYR---KISDKNYSRELIQQFEGKSERKLPGTANLYVFFLLKCLN-- 163

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--LFFRTNIA 404
               N GGRAA ++      +G     +S     L E+ L+ ++        LF     +
Sbjct: 164 --LINVGGRAAFLVPQDFFNSGYGVFIKSA----LQESGLLHSLFLFSPQDSLFDEAITS 217

Query: 405 TYLWILSNRKTEERRG 420
           + + +L + + E++ G
Sbjct: 218 SCILLLESSEKEKKSG 233


>gi|83816335|ref|YP_446911.1| THUMP domain/methyltransferase domain-containing protein
           [Salinibacter ruber DSM 13855]
 gi|83757729|gb|ABC45842.1| THUMP domain/methyltransferase domain protein [Salinibacter ruber
           DSM 13855]
          Length = 369

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 21/146 (14%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
             +S    +   PR  +    A  L               TL DP CG+   L +A +  
Sbjct: 181 EALSRRQLEGYQPRAALKANVAYALL----RLAHLDAPPNTLLDPFCGSSTILLEAAD-- 234

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL- 286
                   +      +G +   E  +     + +  L           I++G     D  
Sbjct: 235 --------LWADTQCYGSDWNEEAVSGARTNVDLAGLSDRIA------IRKGDVWHLDET 280

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAV 312
           F        ++NPPFG +     D  
Sbjct: 281 FADVTADLIVTNPPFGVRMASSMDFY 306


>gi|291536748|emb|CBL09860.1| DNA methylase [Roseburia intestinalis M50/1]
          Length = 2550

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 91/325 (28%), Gaps = 73/325 (22%)

Query: 117  DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164
            + D   T+ ++E    L      K+   F G       + +       E+     L+   
Sbjct: 913  NMDAIRTLKQIESENRLATPEEQKVLSKFVGWGGLSQALDEENAGWSKEYAELKNLLSDE 972

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T  ++     + L+        +       + +P+ G G F     
Sbjct: 973  EYSAARATVNNAFYTSPEIAMCMNSALV--------QFGFRGGNVLEPSMGIGNFFGSM- 1023

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                              +G EL+  +  +              +   + NI   +    
Sbjct: 1024 ---------PAPMQRSKLYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1061

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG     D    +   +  +                 FL    +
Sbjct: 1062 TTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY----------------FLAKALD 1105

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            ++      GG  A++ +   L           IR++L E   +   + LP   F     T
Sbjct: 1106 QVRP----GGMVAVITTKGTLDKANPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1156

Query: 402  NIATYLWILSN--RKTEERRGKVQL 424
             +   +  L    RK +     V L
Sbjct: 1157 EVTADILFLQKRERKIDIEPDWVHL 1181


>gi|87307448|ref|ZP_01089592.1| hypothetical protein DSM3645_28042 [Blastopirellula marina DSM
           3645]
 gi|87289618|gb|EAQ81508.1| hypothetical protein DSM3645_28042 [Blastopirellula marina DSM
           3645]
          Length = 549

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 56/217 (25%), Gaps = 56/217 (25%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           T+ +P CG G FL                       G EL+  +  +  A          
Sbjct: 151 TILEPGCGIGNFL-------------GYGKSDQRFIGVELDSISGRIAKA---------- 187

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                 ++  +  +              + N PF              H           
Sbjct: 188 ---IYPQHDIRIESFHDTKLPHAGIDAVIGNVPFSDLKLDHHGQKFSLHDY--------- 235

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                     F     + L+     GG  A+V S   L    A      IR +L +    
Sbjct: 236 ----------FFAKSVDALKP----GGVLALVTSHFTLDKQNAA-----IREYLADKVDF 276

Query: 388 EAIVALPTDLF--FRTNIATYLWILSNRKTEERRGKV 422
              + LP+D F    T + T +  L  R   E    V
Sbjct: 277 VGAIRLPSDAFKREGTAVVTDIVFLRKRAPGEPAHHV 313


>gi|269977104|ref|ZP_06184078.1| putative methyltransferase, HsdM related [Mobiluncus mulieris 28-1]
 gi|269934935|gb|EEZ91495.1| putative methyltransferase, HsdM related [Mobiluncus mulieris 28-1]
          Length = 621

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 65/228 (28%), Gaps = 31/228 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++  YE L+    S     A  F TP D      A          +       T  DP 
Sbjct: 156 EIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMAA----------QSRDFPAGTWLDPC 205

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRR 270
           CG G        H+    S+            +++       VA +    +   + +   
Sbjct: 206 CGVGNL----AWHLVASQSNPARFVCENLVLIDVDETALRSAVALLGADFLSGGDHEGLA 261

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            L         LSK         + + NPP+ +   K+   +E          F   + K
Sbjct: 262 QLWAKASNRDFLSKSGLAP--HEFVIVNPPYAR--AKESPGLECAASREYFAYFLEKIAK 317

Query: 331 ISDG-------SMLFLMHL--ANKLELPPNGGGRAAIVLS-SSPLFNG 368
            S G       S L +        +      GGR  +  +    LF G
Sbjct: 318 TSRGFIAVTPASYLCVPKFAVLRGILEREQLGGRVFVFDNVPDTLFRG 365


>gi|210610421|ref|ZP_03288401.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
 gi|210152498|gb|EEA83504.1| hypothetical protein CLONEX_00591 [Clostridium nexile DSM 1787]
          Length = 2510

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/408 (12%), Positives = 105/408 (25%), Gaps = 94/408 (23%)

Query: 40   LLRRLECALEPTRSAVREKYLAFGGSNIDL----------ESFVKVAGYSFYNTSEYSLS 89
            + +R     +  ++   E       +  +           +  V+      YN   + + 
Sbjct: 805  VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAVQKKHNFHYNL--WEME 862

Query: 90   TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC------KNFSGI 143
              G+          I +         +  +  + +A  E+   L K        + F   
Sbjct: 863  KGGAKTRYQWNMDAIRT--------LKQIESENRLATPEEQKTLSKFVGWGGLSRAFDEN 914

Query: 144  E--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
                  +    + M +  E+      +  +     F T  ++     + L+        +
Sbjct: 915  NESWSKEYKELKEMLSDEEY-----AAARATVNNAFYTSPEIAMCMNSALV--------Q 961

Query: 202  SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                   + +P+ G G F                       +G EL+  +  +       
Sbjct: 962  FGFRGGNVLEPSMGIGNFFGSM----------PAPMQRSKLYGVELDSISGRIAK----- 1006

Query: 262  RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                   +   + NI   +      +    F   + N PFG     D    +   +  + 
Sbjct: 1007 -------QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY 1058

Query: 322  GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
                                   K       GG  A++ +   L           IR++L
Sbjct: 1059 --------------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYL 1093

Query: 382  LENDLIEAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424
             E   +   V LP   F     T +   +  L    RK +     V L
Sbjct: 1094 AERAELVGAVRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1141


>gi|147677974|ref|YP_001212189.1| hypothetical protein PTH_1639 [Pelotomaculum thermopropionicum SI]
 gi|146274071|dbj|BAF59820.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 221

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 13/73 (17%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            YE ++    + + +    F T R+++     +L   +             + DP CG+G
Sbjct: 2   AYETIV---SNTLKQERGQFFTHRNIIRFMVKMLDPDEKD----------MVLDPACGSG 48

Query: 218 GFLTDAMNHVADC 230
           GFL   ++HV   
Sbjct: 49  GFLVVVLDHVRRK 61


>gi|257455835|ref|ZP_05621060.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
 gi|257446769|gb|EEV21787.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
          Length = 956

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 89/295 (30%), Gaps = 70/295 (23%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            IF    F + I   ++   L +   + S I    + +  + +   YE L     S  ++
Sbjct: 304 DIFGSM-FQAVIDTQQRGN-LGQHYTSVSNIMKVIEPLFLQGLRAEYEQL----ASLSND 357

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
            A      + +  L T L                  ++DP CG+G FL  A   +     
Sbjct: 358 NAHKNQKAKRLDELLTRL--------------GNIKVFDPACGSGNFLIIAYKELRMLEI 403

Query: 233 H----------------------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
                                    +  +    G E++     +    + +   + + + 
Sbjct: 404 KVWQAKLDMMKGNSQNLSWDFGFDSVISLDNFFGIEIDDFAVQIARLSLWLAEHQMNVKF 463

Query: 271 DLSK-------------NIQQGSTLSKDLFT-----GKRFHYCLSNPPFGKKWEKDKDAV 312
             +              +I  G++L  D        G++  Y + NPPFG    +  +  
Sbjct: 464 REAFGQSRATLPLKDSGHIVHGNSLRLDWQAVCPNDGEQEIYLVGNPPFGGSGNRSDEQT 523

Query: 313 EKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGG--RAAIVLSSS 363
               K         G  K         +    AN L+   + G   + A+V ++S
Sbjct: 524 ADMEKV------FAGFKKFKFLDFVTAWFWKGANYLKDSHDKGSQAKMALVSTNS 572


>gi|269926870|ref|YP_003323493.1| hypothetical protein Tter_1765 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790530|gb|ACZ42671.1| conserved hypothetical protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 1098

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 83/270 (30%), Gaps = 59/270 (21%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +    T  +  + + YE  +  +  +V E    + TP  VV      +       F +  
Sbjct: 302 DFGRATRQEDPVVHFYETFLAEYDPKVREMRGVYYTPEPVVSYIVRSVDRLLQEHFGQEH 361

Query: 204 G---MIRTLYDPTCGTGGFLTDAMNHVAD----------CGSHHKIPPILVPHGQELEPE 250
           G       + DP  GTG FL DA+  V +             +     I    G EL   
Sbjct: 362 GLADPNTIVLDPATGTGTFLYDAILRVHESLLSRGLGGLWQGYVAERLIPRIFGFELLMA 421

Query: 251 THAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK---------------------DLF 287
            +AV    +  L+R    +        +   +TL++                     ++ 
Sbjct: 422 PYAVAHLKLSWLLRETGYNLDGSERIGVYLTNTLAEAVQASPLPFAEYISQEANAAAEIK 481

Query: 288 TGKRFHYCLSNPPFG---------------------KKWEKDKDAVEKEHKNGELGRFG- 325
             K     L NPP+                       K   +++    +    +  RFG 
Sbjct: 482 RDKPIMVVLGNPPYSGHSANRGEWIGNLLRDYYQVDGKPLGERNPKWLQDDYVKFIRFGQ 541

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGR 355
             + +   G + ++ +  + L+ P   G R
Sbjct: 542 WRINRTGQGILAYISN-HSYLDNPTFRGMR 570


>gi|152993810|ref|YP_001359531.1| hypothetical protein SUN_2234 [Sulfurovum sp. NBC37-1]
 gi|151425671|dbj|BAF73174.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1069

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 70/491 (14%), Positives = 136/491 (27%), Gaps = 114/491 (23%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTI--------- 124
            +     ++  +     +   N + N+  Y       A  + E     + +         
Sbjct: 260 DIEDRDLWHFYKIYFKAINQGNKKLNIPEY-NGGLFAADEVLESLKIDNHVIDACPLALS 318

Query: 125 ----ARLEKAGLLYKICKN-FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
                      +L  I +N  + IE     + D                   +    F T
Sbjct: 319 AYDFNTDIDVNILGHIFENSLNDIEELKARINDTDFDA---------SKSKRKKDGVFYT 369

Query: 180 PRDVVHLATA-------------LLLDPDDALFKESPGM--------------------I 206
           P  +                   L LD  +    ++P                       
Sbjct: 370 PEYITRYIVDNTLGKLCQAKKEALGLDDVEIEVPKNPKKLNKTETKLKEALEAYREYLLG 429

Query: 207 RTLYDPTCGTGGFLTDAMNHVAD-------------------CGSHHKIPPILVPHGQEL 247
             + DP CG+G FL  A+NH+ +                        K       +G ++
Sbjct: 430 LKILDPACGSGAFLNQALNHLLEEHDFIDEGIRTLMGGSVLGLYDVKKGILENNLYGVDI 489

Query: 248 EPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP--FGKK 304
             E   +    + +R +E       L+  I+ G++L  D    +         P  FG  
Sbjct: 490 NAEAVEIAKLSLWLRTVESGRKLNKLADKIKVGNSLIDDKSVAEDAFVWEEEFPEVFGAD 549

Query: 305 WEKDKDAVEKEHKNGELGRFGP----GLPK--------ISDGSML------------FLM 340
               +  ++K      L R G     G P           D                  +
Sbjct: 550 ASASEKELQKGEAEASLPRGGFDVVIGNPPYVRQELLSAEDKDFFKNHYQTYHGTADLYV 609

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFF 399
           +   K        G  + + SSS           + +R++L  N +IE ++    D +F 
Sbjct: 610 YFYEKAFSLLKENGHMSYISSSSY----FKSGSGANLRKYLKYNTVIEKLIDFGDDTVFE 665

Query: 400 RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK--RRIINDD----QRRQIL 453
                  ++I      +       + +++D+    +    K  +  +ND+        IL
Sbjct: 666 EATTYPVIFIGRKNNEDNNYISTYIKDSSDMQEIEQYSKGKMHQSRLNDNRWQLADESIL 725

Query: 454 DIYVSRENGKF 464
            +Y   ++ KF
Sbjct: 726 KLYDKIKSNKF 736


>gi|170289995|ref|YP_001736811.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170174075|gb|ACB07128.1| Type I restriction-modification system methyltransferase subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 651

 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 96/291 (32%), Gaps = 47/291 (16%)

Query: 104 IASFSDNAKAIF--EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + + SD   +I   +  D +     L +A  +    K+F            R        
Sbjct: 36  LDTLSDWVSSILPVDKLDLNEIKLLLSEAERIKLSVKDFQEKVQRMIPRERR-------- 87

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
             +RF +        + T R V  L   L  D  D+           + DP  G+G  LT
Sbjct: 88  --KRFAA--------YYTIRQVAELMVKLARDLHDSESLI-------IADPFLGSGITLT 130

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
            A++             IL   G EL P    +  A +L    +S   R  + ++  G +
Sbjct: 131 AAID-------KIGPERILKVWGIELLPLPALIAYASLL----QSMKGRREAIDVIVGDS 179

Query: 282 LSK-DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             +       +    L+NPPF +   K  +   +E     +   G G     + S+  L 
Sbjct: 180 FREVPSRDLPKADIILTNPPFTR--WKYLERDYRESLLSLMRELGYGKYMRGESSLQVLS 237

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                 +     GG    VL +S  +       +S +R    E   + AIV
Sbjct: 238 MFLC--DRALRRGGLLVSVLPASTFYTIYGRGYKSFLR----EEYCLHAIV 282


>gi|159897073|ref|YP_001543320.1| hypothetical protein Haur_0544 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890112|gb|ABX03192.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1093

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 16/120 (13%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                ++  +YE ++      +     ++ TP  +V      +      +  +       
Sbjct: 339 ERTRDIVKYVYEQIV---PEPLRHSLGEYFTPEWLVEFTLDRVGYQGSQILDQK------ 389

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-------LVPHGQELEPETHAVCVAGMLI 261
           + DP CG+G FL  A+                          G +L P          LI
Sbjct: 390 ILDPCCGSGNFLIHAIERYKQAAHAQGWDDSAILHGITNHIFGFDLNPLAMLTARVNYLI 449


>gi|294644265|ref|ZP_06722033.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
 gi|292640336|gb|EFF58586.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
          Length = 875

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG      +    +  K G  G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|269958154|ref|YP_003327942.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306835|gb|ACZ32384.1| Type I restriction-modification system methyltransferase
           subunit-like protein [Xylanimonas cellulosilytica DSM
           15894]
          Length = 252

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 16/123 (13%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +    D     ++  +Y  L      + +     F TP D+  L  A+ +         
Sbjct: 107 ELHASFDEAGGDLLGPVYMSLRGLSSQQAA---GAFYTPPDLSVLIGAMTM--------- 154

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
            P     + +P CG GG +   +  +   G+    P        +L+P   A+    +  
Sbjct: 155 -PREGAHVMEPCCGAGGMVLGVVKAMRQAGAD---PDTCTWVLNDLDPVAVALAGVNLAA 210

Query: 262 RRL 264
             L
Sbjct: 211 HGL 213


>gi|49420978|gb|AAT65832.1| M.EsaWC4I [uncultured bacterium]
          Length = 421

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 63/226 (27%), Gaps = 48/226 (21%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPANAAPRSLGRVETPPEVVDFMVSLAEAP----------RGGKVLEPACAHGPFLR 55

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                                +G E++P+   +                  ++ I     
Sbjct: 56  AFREA---------HGTAYRFYGVEIDPKALDL---------------PPWAEGILADFL 91

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339
           L +     + F   L NPP+G   E  K  +    K  +              ++   FL
Sbjct: 92  LWEPR---EAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 L+     GG    V+ ++ L         + +R++L    
Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWLVLDD----FALLRKFLAREG 185


>gi|313144182|ref|ZP_07806375.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
 gi|313129213|gb|EFR46830.1| adenine specific DNA methyltransferase [Helicobacter cinaedi CCUG
           18818]
          Length = 932

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 14/168 (8%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD--- 193
               S  +L  + +      ++YE  ++ +   + E    + TP  VV      +     
Sbjct: 296 LNKLSQKDLLGEHIYKDPYLHLYEDFLKEYDESLREVRGVYYTPAPVVKFIIDSIDLTLQ 355

Query: 194 ---PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-----LVPHGQ 245
                  L         TL D   GTG FL +A     +  + + +           +G 
Sbjct: 356 KDFNKQGLQSAITDDNITLLDFATGTGTFLLEAFRKALESSNKNSVKYNPKALIQRFYGF 415

Query: 246 ELEPETHAVC---VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
           E     + +    ++       E++   + S NI   +TL       +
Sbjct: 416 EFLIAPYTITHLKISQAFKEEFEAELNDNESLNITLTNTLYVSSKADE 463


>gi|310827499|ref|YP_003959856.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
 gi|308739233|gb|ADO36893.1| hypothetical protein ELI_1910 [Eubacterium limosum KIST612]
          Length = 2497

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 66/257 (25%), Gaps = 56/257 (21%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   ++      +        +     I  + +P CGTG F+   
Sbjct: 1002 SEYAAAEGSILNAHYTDPGIISAMYEAV--------QLFGFSIGNVLEPACGTGRFIGTM 1053

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               + +             +G EL+  +  +  A                  I   +   
Sbjct: 1054 PMALRESK----------VYGVELDELSGRMAKA------------LYPKAEIT-INGFE 1090

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               +    F   + N PFG     D    +   +  +                       
Sbjct: 1091 NTHYPINFFDLAIGNVPFGNYKVADTKYDKLNFQIHDY--------------------FI 1130

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             K       GG  A + S   +         S +R+++     +   V LP + F   N 
Sbjct: 1131 AKTLDLVRPGGIIAFITSKGTMDKQN-----SSVRQYIARRAELIGAVRLPNNAFSGANT 1185

Query: 404  ATYLWILSNRKTEERRG 420
                 +L  +K E  R 
Sbjct: 1186 KVTADVLFFQKLESMRD 1202


>gi|16800685|ref|NP_470953.1| hypothetical protein lin1617 [Listeria innocua Clip11262]
 gi|16414104|emb|CAC96848.1| lin1617 [Listeria innocua Clip11262]
          Length = 332

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 81/259 (31%), Gaps = 46/259 (17%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +  +   LL                ++ DP CGT   LT  +N +       K
Sbjct: 95  HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----GLK 143

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG---KRF 292
               +   G +++    ++      +   +   ++           L +D          
Sbjct: 144 GDVDVHASGVDVDDLLISLA-----LVGADLQRQKMTL--------LHQDGLANLLVDPV 190

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              +S+ P G  +  D++A   E    E   F            LF+       +     
Sbjct: 191 DVVISDLPVGY-YPDDENAKTFELCREEGHSF---------AHFLFIEQGMRYTKP---- 236

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           GG    ++  +          +    +++ +N  IE I+ LP  LF        + IL  
Sbjct: 237 GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILQK 292

Query: 413 RKTE-ERRGKVQLINATDL 430
              + +   +V L N + L
Sbjct: 293 ADVDVKPPKEVLLANLSSL 311


>gi|304385203|ref|ZP_07367548.1| adenine-specific methyltransferase [Pediococcus acidilactici DSM
           20284]
 gi|304328410|gb|EFL95631.1| adenine-specific methyltransferase [Pediococcus acidilactici DSM
           20284]
          Length = 343

 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           +++DP  GTG  L+  +N+  D              G + +    A+     +   L+ D
Sbjct: 132 SIFDPAVGTGNLLSTILNYFQDH------QVKFNGTGIDNDDTMLAIASMSFIFEHLKVD 185

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                          S D    K     +S+ P G            E   G   R   G
Sbjct: 186 LYHQD----------SIDNLLVKNADIVVSDLPVGY-------YPIDERTVGFETRSSEG 228

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                  S +  + +   ++    GG    + L  S LF         ++  +  +   +
Sbjct: 229 H------SFVHHLLIEQSMKAVRPGGF--GVYLVPSNLFQTEEA---KKLLAFFHDKIYL 277

Query: 388 EAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQL 424
           +AI+ LP+ +F        + IL    +  ++  +V L
Sbjct: 278 QAILNLPSKMFKDAKAQKSILILQKVGQNAKQADQVLL 315


>gi|298245670|ref|ZP_06969476.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
 gi|297553151|gb|EFH87016.1| N-6 DNA methylase [Ktedonobacter racemifer DSM 44963]
          Length = 579

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 86/288 (29%), Gaps = 47/288 (16%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + N YE  +        +    F TP  +V           +    +       + DP
Sbjct: 4   HDLVNWYESSL---APTERKTRGHFSTPPRLVEQILDACGFSPERNLTQ-----LRVLDP 55

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHG-----QELEPETHAVCVAGMLIR----- 262
            CG G FLT  ++ +      + +                +P+  A  +A M +R     
Sbjct: 56  ACGGGNFLTAVLHRLVLSAEANGLSQRQTLSRVQQNIWGFDPDPVACFMAEMHLREALTT 115

Query: 263 --RLESDPRRDLSKNIQQGSTLSKDL------FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
                   R  L  +I Q   L+                  L+NPP+      D  A   
Sbjct: 116 YTLQSLQHRSSLPLHIHQADALTFPWGQALAEKRHADIDLFLANPPYLAAKNTDLSAY-- 173

Query: 315 EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
                   R   G    SD      +   +        GG   +VL    L    A S  
Sbjct: 174 --------RQARGHQGQSDS----YLLFLDLALRLVRPGGWIGLVLPDPVLARTNAASE- 220

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKV 422
              R+ LL    I  +  L + +F  +     + I++ ++  +R  +V
Sbjct: 221 ---RQALLRETTIHQLWHL-SGVF--SAFVGAVVIVAQKRLPKRSHQV 262


>gi|18311803|ref|NP_558470.1| hypothetical protein PAE0242 [Pyrobaculum aerophilum str. IM2]
 gi|18159211|gb|AAL62652.1| hypothetical protein PAE0242 [Pyrobaculum aerophilum str. IM2]
          Length = 1239

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 28/244 (11%)

Query: 58  KYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS----TNTRNNLESYIAS----FSD 109
            Y A     I  E      G  FY +    L    S       R  L    +        
Sbjct: 246 TYYALIMKLIAAEIAYLYGGGKFYRSYVAELDDAYSREGVEGIRQVLRDLESGGVFRNLL 305

Query: 110 NAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP----DRVMSNIYEHLI 163
           N +   E   FS  +  L+K  A  + +I +  S  E+    +       ++  +Y++L+
Sbjct: 306 NIENFLEGDYFSWYLDELDKELADAVAEIARRLSDYEVAAPQLEPEFARDLLKRLYQNLV 365

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-----GMIRTLYDPTCGTGG 218
                E+     ++ TP  +  L    +      L K         +   + DP CG+G 
Sbjct: 366 ---PGEIRHKLGEYYTPDWLAELVLDEVGLSLKNLLKMGEEDPLKPLKIRVLDPACGSGT 422

Query: 219 FLTDAMNHVADCGSHHKIPPI------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           FL   ++ +      H +             G +L P          L+   +       
Sbjct: 423 FLMLYISRLRRYAEEHYMTDQLLSYVLENVVGYDLNPLAVLTARTNYLLAVADLLSYAKG 482

Query: 273 SKNI 276
              I
Sbjct: 483 RVEI 486


>gi|329927481|ref|ZP_08281705.1| conserved domain protein [Paenibacillus sp. HGF5]
 gi|328938445|gb|EGG34832.1| conserved domain protein [Paenibacillus sp. HGF5]
          Length = 335

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 12/183 (6%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             K F   L+NPPF  +    +     +      G  G    ++    MLF   L    +
Sbjct: 43  KNKLFDLVLANPPFEVEKLPLEIKTIIQKLFPNHGLNGNVFNRLESTMMLFNSLLV---K 99

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  A V+  S L      S    +RR+  +   ++ I+ LP D F   NI T L
Sbjct: 100 PD----GTLASVVPISLLNAENQVS----LRRYFADTYHLDKIIYLPDDAFGAENIRTAL 151

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
            +L    +++       I+    + + +     R+ I D    Q+ DI  ++ +   S +
Sbjct: 152 VLLKKSASKKHTTVYLAIDGNQNYITKKVGSISRKKILDG-LWQLTDISSTKISNDISII 210

Query: 468 LDY 470
            + 
Sbjct: 211 RNN 213


>gi|227432706|ref|ZP_03914677.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
 gi|227351522|gb|EEJ41777.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
            cremoris ATCC 19254]
          Length = 1564

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 134/516 (25%), Gaps = 89/516 (17%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             E   F+     LE    LY+         +       +++  +Y+   +      +E  
Sbjct: 802  LEKAGFTKEQENLEP---LYESV-RMRTEGIEKAEDKQKIIVTLYDKFFKTAFKSTTERL 857

Query: 175  EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232
                TP +VV      + D     F K        + DP  GTG F+   + ++      
Sbjct: 858  GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASQGVHILDPFTGTGTFIVRTLTYLKGHMDA 917

Query: 233  ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQGSTL- 282
                            H  E+   ++ +    +     E +   +     + I    T  
Sbjct: 918  GEISLADITRKFTQELHANEIVLLSYYIAAINIESTFDEINGDEEGYVPFEGIVLTDTFE 977

Query: 283  ---SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
               ++D+     F                  + NPP+    +   D  +  H        
Sbjct: 978  STETEDVLDDDYFGTNDERLKCQQEVPITAIIGNPPYSTGQKSTNDDNQNLHYKKLEQSI 1037

Query: 325  GPGLPKISDGSMLFLMHL-----ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                 K S   +   ++                 G    V ++S + +         +R+
Sbjct: 1038 SETYVKNSKAGLKQSLYDSYVKSIRWASDRIVNKGIVGFVSNASFIDSQSTDG----LRK 1093

Query: 380  WLLENDLIEAIVAL--------------PTDLFFRTNIATYLWILSNRKTEERRGKVQLI 425
             L +      I  L                 +F  +   T + I    K      KV   
Sbjct: 1094 SLYDEFNHLYIFNLRGDQRTQGETSRKEGGKIF-GSGSRTPIAISILVKDGSDNHKVHYH 1152

Query: 426  NATDLWTSIRNEG-----------KKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFG 474
            +  D  +                   + I  D+    I     ++ +G +   +      
Sbjct: 1153 DIGDYLSRDDKLNILHDKETILNIDWQTIFPDENNDWI-----NQRDGDYEAYMPMSDNQ 1207

Query: 475  YRRIKVLRPLRMSFILDKTGLARLEADITW----------RKLSPLHQSFWLDILKPMMQ 524
               I   R + +S   D   +   + +I             ++  + +   +     + +
Sbjct: 1208 STPIFYERSMGISSNRDAFVIGFSKENIEINTTSMITFYNNEIDRISKQKGIFTKNDLDK 1267

Query: 525  QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
                  W +   K        K++ +  +   I+  
Sbjct: 1268 DETKIKWTDGLEKR-----ALKSIPINLNAENIIQI 1298


>gi|240147472|ref|ZP_04746073.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257200328|gb|EEU98612.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 568

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 69/266 (25%), Gaps = 61/266 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +     F T  ++     + L+        +       + +P+ G G F    
Sbjct: 330 EEYSAARATVNNAFYTSPEIATCINSALV--------QFGFKGGNVLEPSMGIGNFFGSM 381

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                              +G EL+  +  +              +   + NI   +   
Sbjct: 382 ----------PAPMQQSRLYGVELDSISGRIAK------------QLYQNANI-SITGFE 418

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +    F   + N PFG     D    +   +  +                       
Sbjct: 419 NTTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FL 458

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A++ +   L           IR++L E   +   + LP   F     
Sbjct: 459 AKALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAG 513

Query: 401 TNIATYLWILSN--RKTEERRGKVQL 424
           T +   +  L    RK +     V L
Sbjct: 514 TEVTADILFLQKRERKIDIEPDWVHL 539


>gi|229543537|ref|ZP_04432597.1| N-6 DNA methylase [Bacillus coagulans 36D1]
 gi|229327957|gb|EEN93632.1| N-6 DNA methylase [Bacillus coagulans 36D1]
          Length = 333

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 83/246 (33%), Gaps = 46/246 (18%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +  A   MTP  +  L +  +    +           ++ DP  GTG  L   +N ++ 
Sbjct: 88  ANVQANHQMTPDSIGLLMSYFIGKFTEDTSA------FSILDPAVGTGNLLATILNQLSG 141

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                     +  +G +++     +    A +L   +E   +            LS    
Sbjct: 142 KN--------ITAYGVDIDDVLIRLAYTGANLLHHEIELFTQ----------DALS--QL 181

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
                   + + P G  +  D  A + + K  E           S    LF+      L 
Sbjct: 182 FIDPVDVVVCDLPVGY-YPNDAGAADYKLKADEGH---------SYAHHLFIEQ---SLR 228

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
               GG    ++ +   LF  +      ++R++L E   I+AI+ LP  +F     A  +
Sbjct: 229 AARPGGFLFFLIPNG--LFETKEAP---KLRQFLKEEADIQAILQLPMTIFKNEQAAKSI 283

Query: 408 WILSNR 413
           +++  +
Sbjct: 284 FVIRKK 289


>gi|283826929|ref|YP_003377691.1| putative restriction enzyme [Corynebacterium glutamicum]
 gi|283362269|dbj|BAI66026.1| putative restriction enzyme [Corynebacterium glutamicum]
          Length = 1030

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 23/201 (11%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           +     + E   F   +A  +    +  I +  S            V+  +YE +I    
Sbjct: 256 NAAIYNVVESDFFDWILADEDGKKFITHIIRRVSVFNW--SETEHDVLKVLYESVI---N 310

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +   +G  ++ TP  +                  +  + + + DP+CG+G F+  A+  V
Sbjct: 311 AATRKGMGEYYTPDWLAEGIVE---------KTVTEPLKQRVLDPSCGSGTFVFHAIRRV 361

Query: 228 ADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL--SKNIQQ 278
            D                     G ++ P +  +     L+   +            +  
Sbjct: 362 LDAADKAGWDNRTALNHIQGHVFGLDIHPVSVVLARVTYLLALGDRLQGDRDGIYVPVHL 421

Query: 279 GSTLSKDLFTGKRFHYCLSNP 299
           G ++               +P
Sbjct: 422 GDSMQWYQPADHEEQTIKVDP 442


>gi|237723835|ref|ZP_04554316.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229437850|gb|EEO47927.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 241

 Score = 46.9 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 18/133 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+ +++   +             F TP  V  L   +           S    + + D 
Sbjct: 74  DVLGDMFMECVSH------GNNGQFFTPIHVAGLMACMGG--------NSLKPKQLVCDS 119

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG+G  L  A+   A+     ++      +G +++     + V  +++  +  +     
Sbjct: 120 CCGSGRMLLSAVKKCAEENDGGRLFC----YGSDIDLICVKMTVVNLMMNSVPGEVAWMN 175

Query: 273 SKNIQQGSTLSKD 285
           +  +Q   +   D
Sbjct: 176 TLTMQHWRSYHID 188


>gi|288560421|ref|YP_003423907.1| restriction enzyme methylase subunit [Methanobrevibacter
           ruminantium M1]
 gi|288543131|gb|ADC47015.1| restriction enzyme methylase subunit [Methanobrevibacter
           ruminantium M1]
          Length = 903

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 62/245 (25%), Gaps = 56/245 (22%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
           Y   K     +    T+   +  +I++ ++     +         T    +      L  
Sbjct: 269 YNQLKEICKFDW--STISPAIFGSIFQSIM---NEDERRQLGAHYTSESNILKVINSLFM 323

Query: 194 PDDALFKESPGMIRT-------------LYDPTCGTGGFLTDAMNHVADCGSHH------ 234
            D                           +DP CG G FL  A   +             
Sbjct: 324 NDLWEEFRKAKKNSKKLEQLRDKMGKLKFFDPACGCGNFLIIAYRELRLLEYEILNILHN 383

Query: 235 ----------------KIPPILVPHGQELEPETHAVCVAGML------------IRRLES 266
                               I   +G E+E     +    M             +   +S
Sbjct: 384 IKSERDTQVLFDSKELSNIKIENFYGIEIEEFPSLIAKVAMWFIEHQMDLKYEQLNIHKS 443

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFH---YCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +     S NI QG+ L  D     +     + L NPPF     +     +KE K    G 
Sbjct: 444 NLPLISSANIIQGNALKIDWTQFLQPTNEVFVLGNPPF-VGSREQTKEQKKEMKEVFKGV 502

Query: 324 FGPGL 328
              GL
Sbjct: 503 KRNGL 507


>gi|256845761|ref|ZP_05551219.1| helicase [Fusobacterium sp. 3_1_36A2]
 gi|256719320|gb|EEU32875.1| helicase [Fusobacterium sp. 3_1_36A2]
          Length = 2122

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/391 (13%), Positives = 100/391 (25%), Gaps = 77/391 (19%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             +          F TP+        +++D               + +P+ G G F+   
Sbjct: 619 EEYTKARGSTLTAFFTPK--------IVIDNIYKGLDNLGFKEGKILEPSSGIGNFIGSI 670

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +               +  EL+  +  +                    NI Q     
Sbjct: 671 PEKME----------NSKFYSVELDSLSGRIEKT------------LYPQANI-QIDGFE 707

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   + N PFG     DK+         +                 F     
Sbjct: 708 NTDFKNNFFDVAVGNVPFGDFKVNDKEYDRNNFLIHDY----------------FFAKSI 751

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
           +K+      GG  A +       NG     +  IRR++ E   +   V LP + F     
Sbjct: 752 DKVRP----GGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 802

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
           T + + +  L  R+          +   D +    +   K    N         I  +  
Sbjct: 803 TEVTSDIIFLKKREER-------FVGEEDWYK--TSTDSKGLSYNKYFIDNPGMILGNMI 853

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
               S            I    P +    +    +  ++     R +     +      +
Sbjct: 854 E--VSGRFGNT------ITCE-PTQDLKDIFPGAIENIKGTYKERDIKEEDINITYYQTQ 904

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVK 551
            +    +     + F KE+ +  E K  K K
Sbjct: 905 EVRNFSFFRENDKVFYKENNEVEEIKDNKEK 935


>gi|242240458|ref|YP_002988639.1| hypothetical protein Dd703_3043 [Dickeya dadantii Ech703]
 gi|242132515|gb|ACS86817.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 871

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 48/199 (24%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI 206
             +   +  ++++ +I     E         T  R+++ +   L LDP      +     
Sbjct: 237 SEINPDIFGSMFQAVID---VEQRSRLGQHYTSYRNIMKVIQPLFLDPLRVELDKQRNNA 293

Query: 207 R------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------------- 240
           +             ++DP CG+G FL  A   + +                         
Sbjct: 294 KGLKALLVRLGKIKVFDPACGSGNFLIVAYKALRNLEIEVIEALRELEPQTFSMSGLHLS 353

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF 287
             +G E++     +    + +   + + + + +              NI  G++L  D +
Sbjct: 354 QFYGIEIDDFASQIARLSLWLAEHQVNSQWEKAFGFAPLALPLRESGNIHSGNSLRLDWY 413

Query: 288 -----TGKRFHYCLSNPPF 301
                      Y + NPPF
Sbjct: 414 QVCPKKVDDEVYVIGNPPF 432


>gi|261369092|ref|ZP_05981975.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
 gi|282568780|gb|EFB74315.1| putative DEAD/DEAH box helicase [Subdoligranulum variabile DSM 15176]
          Length = 2744

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 73/279 (26%), Gaps = 64/279 (22%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            + T  ++V    +          +        + +P+ G G F                 
Sbjct: 990  YYTSPEIVRAMYS--------TLERFGLQGGNILEPSMGVGAFF---------ANRPASF 1032

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                   G EL+P T  +              +     NIQ      K       F   +
Sbjct: 1033 DESANLFGVELDPVTGRIAK------------QLYPKANIQIC-GYEKATLPDSYFDVVI 1079

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D           +                 F     +KL +    GG  
Sbjct: 1080 GNVPFGQYKVNDPAFNRYNFLIHDY----------------FAAKSIDKLRV----GGIQ 1119

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            AI+ +     +G       ++R++L     +   V LP   F     T +   +  L   
Sbjct: 1120 AIITT-----SGTMDKQTEDVRKYLAARCELIGAVRLPNTAFKALAGTEVTADILFLQK- 1173

Query: 414  KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                 R  +   + + L T    +G        D    I
Sbjct: 1174 -----REHILDQDVSWLHTGTNADGIPMNQYFIDHPEMI 1207


>gi|83816871|ref|YP_446985.1| BseRI endonuclease, putative [Salinibacter ruber DSM 13855]
 gi|83758265|gb|ABC46377.1| BseRI endonuclease, putative [Salinibacter ruber DSM 13855]
          Length = 1068

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 78/237 (32%), Gaps = 25/237 (10%)

Query: 92  GSTNT-RNNLESYIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
           G  +  +  LE  +    F+      F D DF   + R E    L  + +  +      D
Sbjct: 278 GDDHIDQEELEGILQGNIFAKYNVENFVDQDFYDWVGREEHFQHLQPVFRQLTSQIGQYD 337

Query: 149 TV--PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
                + ++  +Y+ LI     +      ++ TP  +       L            G  
Sbjct: 338 FSLVDEDILKGVYQELID---IDTRHQLGEYYTPDWLCERVVDELDI----------GGN 384

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-LVPHGQELEPETHAVCVAGMLIRRLE 265
            ++ DP CG+G FL   +    D         I     G ++ P +  +    +L+   E
Sbjct: 385 SSVLDPACGSGSFLRAVIEKFKDEHPDLSARDILERVVGVDIHPLSVQIAKTTVLLTLSE 444

Query: 266 S--DPRRDLSKNIQQGSTLSKDLFT----GKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                RR +S  +   +TL     +    G+ F   +   P+    E  +D    + 
Sbjct: 445 KIRSLRRPVSLKVHLSNTLHAPEGSVDMFGEEFRMMIDGDPYRITVEVFEDPTTFDA 501


>gi|197294496|ref|YP_001799037.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853823|emb|CAM11767.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 74/287 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  V      +L                 + DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSLQIQRGL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  T                       N+   
Sbjct: 52  LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395
           +L  +               IVL +   F     S  S+  +  L  +   I +I++LP 
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178

Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434
           D+F      + + I +    K          +     IN+++ +   
Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225


>gi|67925379|ref|ZP_00518729.1| hypothetical protein CwatDRAFT_0727 [Crocosphaera watsonii WH 8501]
 gi|67852775|gb|EAM48184.1| hypothetical protein CwatDRAFT_0727 [Crocosphaera watsonii WH 8501]
          Length = 516

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 76/253 (30%), Gaps = 44/253 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I        +    F TP  V  +    + + +           +T+ DP  G G     
Sbjct: 7   IANTKISYRKDYGQFFTPSIVSSIMAKWITENE----------PKTILDPAFGLG----V 52

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               ++     ++                + +      I     + + + +  I     L
Sbjct: 53  FYEEISKLSLQYQ-----------WNLTAYEI---DNNILDYLDNIQDNKNITILNQDFL 98

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                    +   + NPP+ +  +             ++G+   G    S+ + +FL+  
Sbjct: 99  VS---EINYYDAIICNPPYMRFQKFINRHNILPKIEQQIGKKLVGY---SNIASIFLIKA 152

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFR 400
             +L    N  GR A +L       G       EI++ L+E  L++ I+      D+F  
Sbjct: 153 LQQL----NSNGRLAFILPFEFFNTGYG----KEIKKTLIEKHLLKQIIIFANEKDIFPD 204

Query: 401 TNIATYLWILSNR 413
                 +    N 
Sbjct: 205 ATTTICILFCENN 217


>gi|298483930|ref|ZP_07002101.1| DNA methylase [Bacteroides sp. D22]
 gi|298269990|gb|EFI11580.1| DNA methylase [Bacteroides sp. D22]
          Length = 1345

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG      +    +  K G  G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|294806707|ref|ZP_06765537.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294446084|gb|EFG14721.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 920

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG      +    +  K G  G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|262381266|ref|ZP_06074404.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296443|gb|EEY84373.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 1665

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 47/360 (13%), Positives = 97/360 (26%), Gaps = 52/360 (14%)

Query: 128  EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +   +L K  +N        D +  +   + N+YE   +    +  +      TP + V 
Sbjct: 844  KDTEVLNKFYENVRMNVGDIDNLEGKQTLIKNLYEKFFKGAFPKTVDKLGIVYTPVECVD 903

Query: 186  LATALLLDPDDALFK-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                 + D     F          + DP  GTG F+T  +          +       H 
Sbjct: 904  FIIHSVDDILRKEFDCSLSDENVHILDPFTGTGTFITRLLQSGLIRPEDLERKYKNEIHC 963

Query: 245  QELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK------------------ 284
             EL    + +    +  +   L         + I    T                     
Sbjct: 964  NELVLLAYYIADVNIESVFHSLVKRDTYLPFEGICLTDTFQTTENEENVLDQTWFPENAA 1023

Query: 285  --DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFL 339
              D          + NPP+    +   D  +         R      K +   + + L+ 
Sbjct: 1024 NVDKQKKAPVRVIMGNPPYSVGQKSANDNAQNLSYAHLDKRIAETYAKAAQATNKNSLYD 1083

Query: 340  MHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             ++               GG  A + + + + +G A  G    R+ L        ++ L 
Sbjct: 1084 SYIKAFRWASDRIADCKDGGVVAFISNGAWI-DGNAQEG---FRKCLEGEYSSVYVLNLR 1139

Query: 395  TD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
             +              +F   +     +  L     ++ +  +Q  +  D  +  +   K
Sbjct: 1140 GNQRTSGELSRKEGGKIFGSGSRTPISITFLVKNPEKKGKATIQYHDIGDYLSREQKLKK 1199


>gi|172039696|ref|YP_001799410.1| putative methylase [Corynebacterium urealyticum DSM 7109]
 gi|171851000|emb|CAQ03976.1| putative methylase [Corynebacterium urealyticum DSM 7109]
          Length = 607

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 54/216 (25%), Gaps = 45/216 (20%)

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------- 233
            L  A     +               DP CG G FL  A   +    +            
Sbjct: 185 RLIQAKSTPGEKPREFRGSLADMVFCDPACGCGNFLVVAYRELRKIETAVIVAIREREGE 244

Query: 234 ---------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----------- 273
                     +   I   +G EL      +    M +   +++     +           
Sbjct: 245 AGMSLDVSWEQKLSIGQFYGFELNWGPAKIAETAMFLVDHQANLELADAIGAAPDRLPIE 304

Query: 274 --KNIQQGSTLSKDLFTGKRF----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +I   + L+ D            +   NPPF  ++ K K       +     R   G
Sbjct: 305 ITAHIVHDNALALDWSEELPATKGQTFIFGNPPFIGQYSKTK-------EQTADMRRAWG 357

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                    L   H    L +  +  G  A V  +S
Sbjct: 358 ADYDGYLDYLTAWHAMT-LRVLSDRAGEFAFVTPNS 392


>gi|282921316|ref|ZP_06329034.1| II DNA/RNA helicase [Staphylococcus aureus subsp. aureus C427]
 gi|282315731|gb|EFB46115.1| II DNA/RNA helicase [Staphylococcus aureus subsp. aureus C427]
          Length = 1311

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 78/541 (14%), Positives = 150/541 (27%), Gaps = 76/541 (14%)

Query: 88   LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK-NFSGIELH 146
               L   N+  N      S     K   +   F     RL      Y+  K   SGI+  
Sbjct: 780  FEALFDQNSFVNNNPVSQSMEKVVKE-LQKAGFEKEQDRL---KPFYESVKLRASGIDNA 835

Query: 147  PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGM 205
                   +++ +YE          S+      TP +VV      + +     F++S    
Sbjct: 836  ESKQK--LITTLYEKFFSTGFKTTSKRLGIIFTPVEVVDFIIKSVDEILQNHFEKSLSSK 893

Query: 206  IRTLYDPTCGTGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAG 258
               + DP  GTG F+   ++++      +K              H  E+   ++ +    
Sbjct: 894  GVHILDPFTGTGTFVARVLSYLKSQMEQNKISMADIVHKYTKELHANEIILLSYYIAAIN 953

Query: 259  M--LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRF----------------HYCLS 297
            +      ++++      + I    T      D      F                   + 
Sbjct: 954  IETTFNEIDTNLEYQPFEGIVLTDTFESTENDNTFDDIFFGINNKRLKQQKKLPITAIIG 1013

Query: 298  NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGR 355
            NPP+ K      D    ++     G+      + +  ++           L    +  G 
Sbjct: 1014 NPPYKKIKATANDFTAVQNYPMLDGKINETYARETSANLKNSLQDSYIRALRWSTDRIGD 1073

Query: 356  AAIVLSSSPLFNGRAGSGESEIRRWLLENDL----------------IEAIVALPTDLF- 398
              I+       NG   S      R +LE D                  EAI     ++F 
Sbjct: 1074 TGII--GFITNNGYIDSASLNGVRKVLEKDFNYIYVINLKGSLSGLSSEAIKREGKNIFD 1131

Query: 399  FRTNIATYLWILSNRKTEERRGKVQLIN-ATDLWTSIRNEGKKRRIIND-DQRRQILDIY 456
             +T +A  + +    K       ++  +   +L    + +      I D D    I D  
Sbjct: 1132 IKTGVAIIILV----KDGSNAHSIKYYDIGNNLSKQEKLDILSNNSIKDLDFIDIIPDEN 1187

Query: 457  VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILD-------------KTGLARLEADIT 503
                N +      Y   G  +  V +   + F  +             +  + R+ ++  
Sbjct: 1188 GDWINHRDKNYGKYLALGGEKDAVFQNKLVGFNTNRDFWSFNFSKKEVEKNIERMISNYN 1247

Query: 504  WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
                         + LK +        W++    + IKS +      K   +    F   
Sbjct: 1248 TEIEKSNDYDTQEEKLKNLNSNESYIKWSQGLKDKFIKSEKLNFKPNKIILTQAKPFTKK 1307

Query: 564  F 564
             
Sbjct: 1308 I 1308


>gi|307154593|ref|YP_003889977.1| Eco57I restriction endonuclease [Cyanothece sp. PCC 7822]
 gi|306984821|gb|ADN16702.1| Eco57I restriction endonuclease [Cyanothece sp. PCC 7822]
          Length = 529

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 48/249 (19%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           E  +    F TP  + +     +L   D          +T+ DP  G G         + 
Sbjct: 21  EHRKKYAQFFTPYPIAYFMAKWILGNPD---------CQTILDPAFGLG----VFARAIL 67

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           D  +                     +    + +   +                       
Sbjct: 68  DQTNTPIKISGFELDRWIFTEAKQLIEKDNISLYNQDYLFTD-----------------W 110

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKL 346
            K++   + NPP+ K    D     KE +N        G+      ++  LFL+    ++
Sbjct: 111 DKKYDGIIGNPPYLKFHSYDNKNSLKEIEN------KLGITLSGLTNLYTLFLLKSLAQI 164

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL--PTDLFFRTNIA 404
           +      GR A ++ S  L +         I+ +LL++  +  I+ L     +F      
Sbjct: 165 KP----NGRIAYIVPSEFLNSDYGKG----IKEYLLKDGKLRYILILDFQETIFNDVVTT 216

Query: 405 TYLWILSNR 413
           + + + +N 
Sbjct: 217 SSILLFAND 225


>gi|197294328|ref|YP_001798869.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853655|emb|CAM11534.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 82/287 (28%), Gaps = 74/287 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  V      +L                 + DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKTTIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  T                       N+   
Sbjct: 52  LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395
           +L  +               IVL +   F     S  S+  +  L  +   I +I++LP 
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178

Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434
           D+F      + + I +    K          +     IN+++ +   
Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225


>gi|67922009|ref|ZP_00515525.1| similar to Type II restriction enzyme methylase subunits
           [Crocosphaera watsonii WH 8501]
 gi|67856225|gb|EAM51468.1| similar to Type II restriction enzyme methylase subunits
           [Crocosphaera watsonii WH 8501]
          Length = 779

 Score = 46.9 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 50/186 (26%), Gaps = 45/186 (24%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI------- 206
             N++E  +     +       + T   D++ +    +    +   + +  +        
Sbjct: 294 FGNLFEGTV---NEDERHAYGIYYTSEADIMKIIRPTISRYWEDKIEAAKNIGELNQLQL 350

Query: 207 ----RTLYDPTCGTGGFLTDAMNHVADCGS-------HHKIPPI----------LVPHGQ 245
                 + DP CG+G FL  A   +              +                 +G 
Sbjct: 351 ELQQYKVLDPACGSGNFLYVAYQELKRIEQLLLNKIYQRRKSKNEQMIMGFVTLKQFYGM 410

Query: 246 ELEPETHAVCVAGMLI----------RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           ++ P    +    ++I                P   L  NI     L  D     +    
Sbjct: 411 DINPFAVELARVTLMIARKVAIDKFELTENYLPLDSLDDNILCQDALFNDW---VKADAI 467

Query: 296 LSNPPF 301
           + NPPF
Sbjct: 468 IGNPPF 473


>gi|238925906|ref|YP_002939424.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
 gi|238877583|gb|ACR77290.1| possible adenine-specific DNA methylase [Eubacterium rectale ATCC
            33656]
          Length = 2560

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 74/260 (28%), Gaps = 57/260 (21%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +       T   V+     +L          + G    + +P+ G G F    
Sbjct: 1024 EEYAAARASTLNAHYTQPIVIDSMYQVL-----ENLGFTKG---NILEPSMGVGNFFGML 1075

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              ++               +G EL+  +  +                    NI Q     
Sbjct: 1076 PENL----------NQSKLYGVELDSISGRIAK------------LLYPDANI-QIKGFE 1112

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K  +    F   + N PFG     D+             RF   +         FL    
Sbjct: 1113 KTDYPNDFFDVTIGNVPFGAYKVNDRQ----------YDRFNFMIH-----DY-FLAKTI 1156

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
            ++L      GG AA++ +   +          E+R++L E   +   + LP   F     
Sbjct: 1157 DQLRP----GGVAALITTKGTM-----DKASPEVRKYLAERADLLGAIRLPNTAFKANAG 1207

Query: 403  IATYLWILSNRKTEERRGKV 422
                  IL  +K +    ++
Sbjct: 1208 TEVSADILFFQKRDSMTKEM 1227


>gi|72163127|ref|YP_290784.1| DNA methylase [Thermobifida fusca YX]
 gi|71916859|gb|AAZ56761.1| putative DNA methylase [Thermobifida fusca YX]
          Length = 1208

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 49/181 (27%), Gaps = 39/181 (21%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             +  +F+  +L       R ++ +Y+ L            +   TP  VV     L L+
Sbjct: 183 GTLIHDFTDPDL-----DTRFLAELYQEL----SESARAADDLLPTPDFVVDFLLDLTLE 233

Query: 194 PDDALFKESP--------------GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK---- 235
           P    F   P                     DP CG+G FL      +            
Sbjct: 234 PAIDEFGLDPELDVHDSSGAPVWRHRGLRTVDPACGSGEFLLGLFTRILARNRAAAGPGA 293

Query: 236 ------IPPILVPHGQELEPETHAVCVAGMLIRRL------ESDPRRDLSKNIQQGSTLS 283
                    +   HG +  P    +    +LI  L        D   D   +I  G  L 
Sbjct: 294 DRWELVRKALNSVHGCDKNPFAANIARFRLLIAVLRETGARRLDQAPDFPVHIAVGDALL 353

Query: 284 K 284
            
Sbjct: 354 H 354


>gi|224026703|ref|ZP_03645069.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
           18228]
 gi|224019939|gb|EEF77937.1| hypothetical protein BACCOPRO_03460 [Bacteroides coprophilus DSM
           18228]
          Length = 1659

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG      +    +  K G  G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|300214269|gb|ADJ78685.1| Adenine-specific methyltransferase [Lactobacillus salivarius CECT
           5713]
          Length = 339

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 122/369 (33%), Gaps = 44/369 (11%)

Query: 85  EYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
           EYSL        + NL++ Y+ +  +  + I ++        +      + K+ + ++  
Sbjct: 11  EYSLLEEAVKELQKNLQTTYLDALIETLENILDNNQVHVEDDK-PDKKTVAKLKELYADS 69

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +    +       + + LI +  SE    A   MTP  +  + + L+            
Sbjct: 70  NI--KNLEADEKRQVIQLLILKSYSEDKIQANHQMTPDSIGMIVSYLI------ELFADS 121

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             + T+ D   GTG  LTD  N++     + +       +G + +    A+         
Sbjct: 122 KKVLTITDICVGTGNLLTDIYNNLDKQNKNIQ------AYGIDNDDTLLALA-------- 167

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             S   +   +NI+     + +     +    + + P G  +    D V         G 
Sbjct: 168 --SISTQFQKQNIELYHQDAIEELLIPKTDLVVGDLPVG--YYPIDDKVSDYITKNNDG- 222

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   S    + +     +L+          I +    +F         ++ +++ +
Sbjct: 223 -------HSYAHYVLIEKSIRQLKEDG-----IGIFIVPRGIFE---VKDSVKLLKYIQK 267

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              ++ ++ LPT+LF        + ++  +  + ++ +  L+     +       K    
Sbjct: 268 VGYLQGLLNLPTELFNDKQSMKSILVVQKKGNKAKQAEEVLLGDFPSFKKQEEFKKFINE 327

Query: 444 INDDQRRQI 452
           I    ++ I
Sbjct: 328 IVSWAKKNI 336


>gi|293369550|ref|ZP_06616128.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292635254|gb|EFF53768.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 1659

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K       G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|21655249|gb|AAM49818.1| putative methylase [Borrelia hermsii]
          Length = 1048

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 25/212 (11%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
             K      S ID ++  K    +F       +  L      +     I    +    I 
Sbjct: 231 LAKLNNTSNSRIDFDNIKKFIPNNFALIQ--DILKLIDNIASSREYDSIRWVLEELIDIV 288

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + D ++   +             F+      D          YE  + ++   + +   
Sbjct: 289 NNIDSNTIFEQFS-----------FTQNVKSSDNNVKDPYLYFYEDFLAKYDKSLRKNKG 337

Query: 176 DFMTPRDVVHLATA----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            + TP  VV+   +    +L          +     T+ D   GTG FL + +  +    
Sbjct: 338 VYYTPHSVVNFIVSSLNKILKYNFGLENGFANREEVTVLDFATGTGTFLLEVIKCILKEI 397

Query: 232 SHHKIPPILV--------PHGQELEPETHAVC 255
                              +G E     +AV 
Sbjct: 398 PKQTGKQKDYINDHILKNIYGFEYLMAPYAVA 429


>gi|55822815|ref|YP_141256.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55738800|gb|AAV62441.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 125

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/142 (8%), Positives = 43/142 (30%), Gaps = 21/142 (14%)

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
             T I   + IL   +       +  ++A+  +  ++N    ++ +  +   +I +  + 
Sbjct: 1   MNTGIPVCVLILKKNRANS---DILFVDASQGFEKMKN----QKQLRPEDIYKITETVIH 53

Query: 459 RENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI 518
           R+                   +   +   + L+           T+ +  P+  +     
Sbjct: 54  RK---------AVDKYSHLATLEEVIENDYNLNIPRYV-----DTFEEEEPIDLADIQGQ 99

Query: 519 LKPMMQQIYPYGWAESFVKESI 540
           +  +  +I       +   + +
Sbjct: 100 IDEVDAEIAKANQTLANHFKEL 121


>gi|53714149|ref|YP_100141.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|52217014|dbj|BAD49607.1| putative DNA methylase [Bacteroides fragilis YCH46]
          Length = 1659

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K       G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|106534258|gb|ABF82190.1| putative methylase [Borrelia hermsii DAH]
          Length = 753

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 57/212 (26%), Gaps = 25/212 (11%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF 115
             K      S ID ++  K    +F       +  L      +     I    +    I 
Sbjct: 231 LAKLNNTSNSRIDFDNIKKFIPNNFALIQ--DILKLIDNIASSREYDSIRWVLEELIDIV 288

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
            + D ++   +             F+      D          YE  + ++   + +   
Sbjct: 289 NNIDSNTIFEQFS-----------FTQNVKSSDNNVKDPYLYFYEDFLAKYDKSLRKNKG 337

Query: 176 DFMTPRDVVHLATA----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
            + TP  VV+   +    +L          +     T+ D   GTG FL + +  +    
Sbjct: 338 VYYTPHSVVNFIVSSLNKILKYNFGLENGFANREEVTVLDFATGTGTFLLEVIKCILKEI 397

Query: 232 SHHKIPPILV--------PHGQELEPETHAVC 255
                              +G E     +AV 
Sbjct: 398 PKQTGKQKDYINDHILKNIYGFEYLMAPYAVA 429


>gi|238761849|ref|ZP_04622823.1| Cytosine-specific methyltransferase [Yersinia kristensenii ATCC
           33638]
 gi|238699963|gb|EEP92706.1| Cytosine-specific methyltransferase [Yersinia kristensenii ATCC
           33638]
          Length = 826

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 73/257 (28%), Gaps = 36/257 (14%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT----RNNLESYIASFSDNAK 112
             +       +   S        F    E+++              N+ + I  FS   +
Sbjct: 328 ASFKWVEDKELPSNSAPFCDKEKFRKKYEFNIRQCIGEAIPTQVITNIANKIKFFSK--R 385

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            I    +    I +       Y +    + I             +IY+  I    +    
Sbjct: 386 KILSSKNIHEIINQ-------YNLTNMDNLITFVKGNWDVINREDIYK--ICELSNAERL 436

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F T +D+       L D               + +P+ G G FL        +   
Sbjct: 437 ETAAFYTSKDICFSVLEKLPDFKKDTI--------RILEPSVGVGNFLPILAKRYEEKKI 488

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                 I         PE+ A+C         E     ++  N  +   L  D F  +++
Sbjct: 489 IIDCIDI--------NPESLALCRL-----LSEKFISGNIIINYIESDFLLYDRFPQEKY 535

Query: 293 HYCLSNPPFGKKWEKDK 309
              + NPP+ K  EK+K
Sbjct: 536 DLVIGNPPYMKVIEKEK 552


>gi|167855421|ref|ZP_02478187.1| hypothetical protein HPS_04467 [Haemophilus parasuis 29755]
 gi|167853487|gb|EDS24735.1| hypothetical protein HPS_04467 [Haemophilus parasuis 29755]
          Length = 214

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 11/147 (7%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +  P  V+   Y  L        ++      TP     +   +L+ P +           
Sbjct: 70  EEEPQDVLGQCYMKL-----QIANKQRGQCFTPLSTGQVMANMLIAPSE----IDEKGYF 120

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TL +PTCG+G  +      +   G +      L+   Q+++ ++  +C   + +  + + 
Sbjct: 121 TLNEPTCGSGALIISFCETLKSQGYN--PQQQLLVIAQDIDLKSVQMCYVQLSLLGISAI 178

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHY 294
            +           T    L+  +R  Y
Sbjct: 179 IQHANPIANNVIDTYYTPLYLLQRNRY 205


>gi|23099647|ref|NP_693113.1| hypothetical protein OB2192 [Oceanobacillus iheyensis HTE831]
 gi|22777877|dbj|BAC14148.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 332

 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 101/337 (29%), Gaps = 52/337 (15%)

Query: 86  YSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           ++     + N +      ++ S     + +FE  D       + K      + +  S I+
Sbjct: 10  FNWLDKTTENVQQAKNETFLDSLVLTLEMLFEK-DVPENFDDIAKHK----LNQLLSEIK 64

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +      +         L            +  +   D V L  + L +        S  
Sbjct: 65  VSDFQHEEIRKGISLAILKGM----KGSTQQQHLMTPDTVSLIVSYLANKL-----LSSQ 115

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               L+DP  GTG  LT  MN +            +  +  E++P    + V    ++  
Sbjct: 116 KEVALFDPASGTGNLLTAVMNQL---------DKDVAAYAAEVDPTLIGLAVLNANLQEK 166

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           E +             +L    F  +     +S+ P G  +  D  A + E K+ E   +
Sbjct: 167 EVEFF--------HQDSLRP--FLMEPVDIVISDLPVGY-YPDDVSASDYELKSDEGHSY 215

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                       LF+      ++      G          LF+        ++  +L ++
Sbjct: 216 SHH---------LFIEQSLTYMKEGAYFVGVVPEF-----LFDSDQS---DKLHAFLQKH 258

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
             I  ++ LP   F     A  + IL  +       K
Sbjct: 259 AHIVGVIRLPESAFKSKQQAKSILILQKKGEATSDPK 295


>gi|306819272|ref|ZP_07452982.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304647938|gb|EFM45253.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 621

 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 64/228 (28%), Gaps = 31/228 (13%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++  YE L+    S     A  F TP D                 +       T  DP 
Sbjct: 156 EIAVCYEALLATLDSRRRRSAGQFFTPDDAAAFMA----------VQSRDFPAGTWLDPC 205

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPRR 270
           CG G        H+    S+            +++       VA +    +   + +   
Sbjct: 206 CGVGNL----AWHLVVAQSNPARFVRENLVLIDVDETALRSAVALLGADFLSGGDHEGLA 261

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            L         LSK         + + NPP+ +   K+   +E          F   + K
Sbjct: 262 QLWAKASNRDFLSKSGLAP--HEFVIVNPPYAR--AKESPGLECAASREYFAYFLEKIAK 317

Query: 331 ISDG-------SMLFLMHL--ANKLELPPNGGGRAAIVLS-SSPLFNG 368
            S G       S L +        +      GGR  +  +    LF G
Sbjct: 318 TSRGFIAVTPASYLCVPKFAVLRGILEREQPGGRVFVFDNVPDTLFRG 365


>gi|222108974|ref|YP_002551240.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
 gi|221727896|gb|ACM30946.1| SNF-2-family methyltransferase [Agrobacterium radiobacter K84]
          Length = 1693

 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 72/274 (26%), Gaps = 60/274 (21%)

Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             + +  E  +    + S          TP  +V    +          +        + 
Sbjct: 140 DDIGSDLEDAVGETDYASLARCTQYAHFTPEFIVRAIWS--------ALQRLGWRGGRVL 191

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P  GTG F       + D              G EL+P T  +                
Sbjct: 192 EPGIGTGLFPALMPEALRDLS---------HVTGVELDPVTACIVR------------LL 230

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I  G   ++       F   + NPPF  +  +   A                   
Sbjct: 231 QPRARILTGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY-------- 280

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+    + L+     G  AA V S     +G     +S  R ++     + A 
Sbjct: 281 -------FIARSIDLLKP----GAFAAFVTS-----SGTMDKADSSAREYIARTADLIAA 324

Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           + LP   F     T++   +     RK  E  G 
Sbjct: 325 IRLPEGSFRADAGTDVVVDILFFRKRKVAEPEGN 358


>gi|319647043|ref|ZP_08001269.1| endonuclease and methylase LlaGI [Bacillus sp. BT1B_CT2]
 gi|317390867|gb|EFV71668.1| endonuclease and methylase LlaGI [Bacillus sp. BT1B_CT2]
          Length = 1570

 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 69/250 (27%), Gaps = 25/250 (10%)

Query: 109  DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            D    + +         RLE     Y+  +  +    +     D ++  +Y+   +    
Sbjct: 809  DAVLNVMDKQGLMKEQERLEN---FYESVRVRAEGIDNLKAKQDIII-QLYDKFFKIGFR 864

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E +E      TP +VV      + D     F K        + DP  GTG F+   +   
Sbjct: 865  ETTERLGIVFTPVEVVDFIIHSVEDVLKKHFGKSISDEGVHILDPFTGTGTFIVRLIQSG 924

Query: 228  ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTL---- 282
                           H  E+   ++ +    +               N I    T     
Sbjct: 925  LISKEDLLRKYTQELHANEIILLSYYIAAINIEETFHSIMKGDYTPFNGIVLTDTFESTE 984

Query: 283  SKDLFTGKRFH---------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             +D F  + F                  + NPP+  +   + D  E        GR    
Sbjct: 985  KEDSFEDELFGENNERLERQRKEPIFAIIGNPPYSARQRSENDNNENVAYPILEGRIADT 1044

Query: 328  LPKISDGSML 337
              K S  + L
Sbjct: 1045 YAKYSKANAL 1054


>gi|260438308|ref|ZP_05792124.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292809330|gb|EFF68535.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 2481

 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 86/325 (26%), Gaps = 73/325 (22%)

Query: 117  DFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164
            + D   T+ ++E    L       +   F G         +       E+     L+   
Sbjct: 876  NIDAICTLKQIEAENRLATQEEQTVLSKFVGWGGLSQAFDENNAGWTREYAELKELLSDE 935

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T  ++     + L+        +       + +P+ G G F     
Sbjct: 936  EYSAARATVNNAFYTSPEIAMCINSALV--------QFGFKGGNVLEPSMGIGNFFGSMP 987

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
              +               +G EL+  +  +              +   + NI   +    
Sbjct: 988  APMQQSK----------LYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1024

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG     D    +   +  +                        
Sbjct: 1025 TTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FLA 1064

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A++ +   L           IR++L E   +   + LP   F     T
Sbjct: 1065 KALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1119

Query: 402  NIATYLWILSN--RKTEERRGKVQL 424
             +   +  L    RK +     V L
Sbjct: 1120 EVTADILFLQKRERKIDIEPDWVHL 1144


>gi|255009084|ref|ZP_05281210.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|313146833|ref|ZP_07809026.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135600|gb|EFR52960.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1659

 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 81/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYDYAIEKD 153

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                               ++GM++  L  +     +       T+ +  F    F   
Sbjct: 154 F-------------------ISGMILSLLHENTLTRTAA----FETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K       G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|119714077|ref|YP_919219.1| putative type II DNA modification enzyme [Nocardioides sp. JS614]
 gi|119525986|gb|ABL79356.1| putative type II DNA modification enzyme [Nocardioides sp. JS614]
          Length = 1331

 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 65/225 (28%), Gaps = 55/225 (24%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKN-FSGIELHPDTVPDR------VMSNIY 159
           F+  A  +          +RL  A LL  +        +  P  + D        + +IY
Sbjct: 370 FAPTAADVLAG-------SRLPNAALLTAVRSLAVVQPKGQPQRLVDFAHLGAEELGSIY 422

Query: 160 EHLIR---------------RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           E L+                       + +  + TP ++V L     LDP     +++  
Sbjct: 423 ESLLELVPRHDPTTHAFTLETLAGNDRKTSGSYYTPTELVELVLDTALDPVLDDAEKNAH 482

Query: 205 MIR---------TLYDPTCGTGGFLTDAMNHVA----------------DCGSHHKIPPI 239
                        + DP+ G+  FL  A   +A                           
Sbjct: 483 TTEEAEAALLGLRVCDPSVGSAHFLVAAARRIATRLATVRTGEVDPTPTAYSDAMHDVVA 542

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLS 283
              +G ++ P    +    + +  +    P   L  +I+ G+ L 
Sbjct: 543 RCVYGIDINPMAADLAKVSLWLTAMSPGRPLSFLDHHIKVGNALL 587


>gi|225378233|ref|ZP_03755454.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
 gi|225209896|gb|EEG92250.1| hypothetical protein ROSEINA2194_03894 [Roseburia inulinivorans DSM
            16841]
          Length = 2481

 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 85/325 (26%), Gaps = 73/325 (22%)

Query: 117  DFDFSSTIARLEKAGLLYK-----ICKNFSGIELHPDTVP--DRVMSNIYEHLIR----- 164
            + D   T+ ++E    L +     +   F G           +   S  Y  L       
Sbjct: 876  NIDAIRTLKQIEAENRLARPKEQTVLSKFVGWGGLSQAFDENNAAWSKEYAELKELLSDE 935

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T  ++     + L+        +       + +P+ G G F     
Sbjct: 936  EYSAARATVNNAFYTSPEIATCINSALV--------QFGFKGGNVLEPSMGIGNFFGSM- 986

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                              +G EL+  +  +              +   + NI   +    
Sbjct: 987  ---------PAPMQQSRLYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1024

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG     D    +   +  +                        
Sbjct: 1025 TTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FLA 1064

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A++ +   L           IR++L E   +   + LP   F     T
Sbjct: 1065 KALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1119

Query: 402  NIATYLWILSN--RKTEERRGKVQL 424
             +   +  L    RK +     V L
Sbjct: 1120 EVTADILFLQKRERKIDIEPDWVHL 1144


>gi|282933140|ref|ZP_06338527.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
 gi|281302644|gb|EFA94859.1| adenine-specific DNA methylase [Lactobacillus jensenii 208-1]
          Length = 332

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 43/351 (12%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            + NL    A          E+      +        +  + K +  +         + M
Sbjct: 18  LQKNLNVPFAGAVTETFDNLENGKIKVEMGA-PDKETVALLSKKYQELNYDKLPSTQKYM 76

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  L  +   E         TP  V+    A++ D      K        + DP  G
Sbjct: 77  --VFTLLTLKAMKEDGRNYSQMPTP-PVLATVVAMVWD------KLITKTELAVVDPAIG 127

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L      +      H         G + +     +   G  +   + D        
Sbjct: 128 TGSLL---YTVIDQLVQSHHSQNKYRLAGIDNDESMLDLADVGAHLSNYKIDL------- 177

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                 L    +  ++    +S+ P G         +++  KN     F     +  +G 
Sbjct: 178 -YCQDALEN--WLIEKPDVIVSDLPVG------YYPIDENAKN-----FA---TQAKEGH 220

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L    L  +        G A +++ +S L  G     E     WL +   ++A+V LP 
Sbjct: 221 SLAHELLVEQTIKNLAPAGYAFLLVPNSLL--GGKLGAEFMP--WLAKKVYLQAVVQLPN 276

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444
           DLF        L +  N     +   V L     L       +  +K    
Sbjct: 277 DLFQNPLNQKSLLVFQNHGEGAQSRDVLLAKLGSLREEKSLVDFNQKLNEW 327


>gi|256851410|ref|ZP_05556799.1| adenine-specific DNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260660831|ref|ZP_05861746.1| adenine-specific DNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|297206223|ref|ZP_06923618.1| possible DNA methyltransferase [Lactobacillus jensenii JV-V16]
 gi|256616472|gb|EEU21660.1| adenine-specific DNA methylase [Lactobacillus jensenii 27-2-CHN]
 gi|260548553|gb|EEX24528.1| adenine-specific DNA methylase [Lactobacillus jensenii 115-3-CHN]
 gi|297149349|gb|EFH29647.1| possible DNA methyltransferase [Lactobacillus jensenii JV-V16]
          Length = 332

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 99/351 (28%), Gaps = 43/351 (12%)

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
            + NL    A          E+      +        +  + K +  +         + M
Sbjct: 18  LQKNLNVPFAGAVTETFDNLENGKIKVEMGA-PDKETVALLSKKYQELNYDKLPSTQKYM 76

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++  L  +   E         TP  V+    A++ D      K        + DP  G
Sbjct: 77  --VFTLLTLKAMKEDGRNYSQMPTP-PVLATVVAMVWD------KLITKTELAVVDPAIG 127

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG  L      +      H         G + +     +   G  +   + D        
Sbjct: 128 TGSLL---YTVIDQLVQSHHSQNKYRLAGIDNDESMLDLADVGAHLSNYKIDL------- 177

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                 L    +  ++    +S+ P G         +++  KN     F     +  +G 
Sbjct: 178 -YCQDALEN--WLIEKPDVIVSDLPVG------YYPIDENAKN-----FA---TQAKEGH 220

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L    L  +        G A +++ +S L  G     E     WL +   ++A+V LP 
Sbjct: 221 SLAHELLVEQTIKNLAPAGYAFLLVPNSLL--GGKLGAEFMP--WLAKKVYLQAVVQLPN 276

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR--NEGKKRRII 444
           DLF        L +  N     +   V L     L       +  +K    
Sbjct: 277 DLFQNPLNQKSLLVFQNHGEGAQSRDVLLAKLGSLREEKSLVDFNQKLNEW 327


>gi|322691082|ref|YP_004220652.1| hypothetical protein BLLJ_0892 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320455938|dbj|BAJ66560.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 932

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 75/291 (25%), Gaps = 77/291 (26%)

Query: 116 EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAE 175
           +  D       L  A     + +   G +     +   +  ++ E  +     +      
Sbjct: 274 DRIDVPPLTGELRDA-----LLEISEGFDW--SGISPVIFGSLMEETLSH---DERRKGG 323

Query: 176 DFMTP-RDVVHLATALLLDPDDALFKESPG-------------------MIRTLYDPTCG 215
              T  +++  L   L LD   A  + +                           DP CG
Sbjct: 324 MHYTSVKNIHRLIDPLFLDGLKAELEGAEARPVAGGSRTNALNKLHDKIAGLRFLDPACG 383

Query: 216 TGGFLTDAMNHVADCGSHHKIPPIL--------------------VPHGQELEPETHAVC 255
           +G FLT+    +    +                              HG E+     AV 
Sbjct: 384 SGNFLTETYLELRRIENRILADLDKDGQLALDLGDDINPVKVSISHFHGIEINGFACAVA 443

Query: 256 VAGMLIRRLESDPRRDL------------SKNIQQGSTLSKDL---FTGKRFHYCLSNPP 300
              + I   ++    +             + +IQQG+ L  D      G    Y + NPP
Sbjct: 444 RTALWIAEQQALDDTESTISGLPRLPFTDTAHIQQGNALRLDWNELLPGDHCDYVMGNPP 503

Query: 301 FG---KKWEKDKDAVEKEHKNGELG---------RFGPGLPKISDGSMLFL 339
           F     K     D ++        G         R         D +  F+
Sbjct: 504 FIGHVTKTAGQTDDLKTVWGRQYDGYLDYATGWYRKAASYLSKPDAAFAFV 554


>gi|319935365|ref|ZP_08009803.1| helicase domain-containing protein [Coprobacillus sp. 29_1]
 gi|319809773|gb|EFW06174.1| helicase domain-containing protein [Coprobacillus sp. 29_1]
          Length = 3184

 Score = 46.5 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 95/320 (29%), Gaps = 65/320 (20%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-H 161
              +  N KAI   ++ +    +A  E+  +L +     S  +    T P+     +    
Sbjct: 1609 EKYKANVKAIQLLKELEIEHRLATPEEQEILSRFVGWGSLADAFDQTKPNWKNEYLELKD 1668

Query: 162  LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            L+  +++ +        F TP  V+                +       + +P+CG G F
Sbjct: 1669 LLNDKQYRAARESTLTAFYTPPIVIQSIYH--------KLSDMGLKTGNILEPSCGIGHF 1720

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 N                 +G EL+  +  +                  +  I   
Sbjct: 1721 FGMKPN-----------DMDCHFYGVELDEISGKIAQ------------HLYQNATIAIQ 1757

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                        F   + N PFG+    D    + +    +                 F 
Sbjct: 1758 -PFENTDVPDNLFDAVVGNVPFGQIPIHDPRYNKNKFMIHDY----------------FF 1800

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399
                +K++          IV+  +  F     +  S++R+++ +   +   V LP + F 
Sbjct: 1801 AKALDKVKTG-------GIVILLTSKFTMDKQN--SDVRKYIAQRAELLGAVRLPDNTFM 1851

Query: 400  R---TNIATYLWILSNRKTE 416
                T I + + IL  R+  
Sbjct: 1852 NNAGTRITSDILILQKRERP 1871


>gi|114777159|ref|ZP_01452170.1| adenine specific DNA methyltransferase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552304|gb|EAU54787.1| adenine specific DNA methyltransferase [Mariprofundus ferrooxydans
           PV-1]
          Length = 654

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 111/398 (27%), Gaps = 97/398 (24%)

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA 125
           +  L++F +         S   L  L +     +++  I +  DN   +F   D  + + 
Sbjct: 227 DDTLDTFSRQEAAELIPKSNPFLRKLFNHVAGADIDERIKTTVDNLADVFRATDVKALLK 286

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
              +A   +    +F                  YE  +  +  ++ +    + TP  VV 
Sbjct: 287 NFGRATQTHDPIIHF------------------YETFLAEYDPKLRKARGVWYTPEPVVS 328

Query: 186 LATALLLDPDDALFKESPGMIRT----------------------------------LYD 211
                + +     F    G+  T                                  + D
Sbjct: 329 FIVRGVDEILKTEFALKDGLADTSKTTIEVQVQGAAISKGRNKGKPLIQKKEVHKVQVLD 388

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---------ETHAVC--VAGML 260
           P  GTG FL + +  + +               + L P          ++A+      ML
Sbjct: 389 PATGTGTFLAEVVKFIYNGKFKAMQGAWSSYVDEHLIPRLNGFELLMASYAMAHLKLDML 448

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFT----------------------GKRFHYCLSN 298
           +R       ++   NI   ++L ++                                + N
Sbjct: 449 LRDTGFVANKEQRLNIYLTNSL-EEHHPDTGTLFSSWLSTEANEANHIKRDTPVMVVMGN 507

Query: 299 PPFGKKWEKDKDAVEKEHKN-----GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+  +     + + K  ++     G   +     PK  +   +  M       +  NG 
Sbjct: 508 PPYSGESANKGEWIMKLMEDYKKEPGGKEKLKERNPKWINDDYVKFMRYGQHF-IEKNGE 566

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAI 390
           G  A +     L N         +R  LL+  D I  I
Sbjct: 567 GILAFINPHGFLDNPTFRG----MRWNLLKTYDKIYTI 600


>gi|260494189|ref|ZP_05814320.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260198335|gb|EEW95851.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 474

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 133/391 (34%), Gaps = 48/391 (12%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD-----AMNH 226
           +      TP ++V+L    +      + K      + + + +CG G FL           
Sbjct: 2   KKNGVVYTPENIVNLLLKEVDYNGKKILK------KHVMENSCGDGAFLIKIVEKYCEEF 55

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLSKD 285
           +       K+   L  +   +E +   V      +  + S       K +I QG++L   
Sbjct: 56  LLTNSDIDKLVLELEKYIHGIEIDKIEVEKTKKNLDNIISKFTPKKVKWDINQGNSLLIK 115

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            +   +  Y + NPP+ +  + ++D +    K     +FG       D  + F     N 
Sbjct: 116 KY-DNKMDYVIGNPPYIRIHDLNEDNIA--IKKLNFSKFGMT-----DLFIAFFEIGINM 167

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIA 404
           L       G+   +  +S  F  +AGS   E R +++E  ++  I+ L     F      
Sbjct: 168 LSK----NGKLVYITPNSF-FTSKAGS---EFRNYIIEKKILTKILNLKHYKAFKNITTY 219

Query: 405 TYLWILSNRKT---------EERRGKVQ-----LINATDLWTSIRNEGKKRRIIN--DDQ 448
           T + +L  +           +  +  +       IN    +         + I+N  +  
Sbjct: 220 TTITVLDKKNKNNFLQYNEYQNEKNLILNYDDIFINDCYYFAEKETLKDLKNILNYKESS 279

Query: 449 RRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLE--ADITWRK 506
           ++ +LD+         S  +    F ++   + + ++ S    K  +   +   ++    
Sbjct: 280 KKNLLDVKNGFATLADSIFIS-DDFLFKSKYIYKAIKASTNQIKKIIFPYDSSFNLVDFN 338

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVK 537
           L       +L+  K +++       ++ +  
Sbjct: 339 LFEKDLQKYLENNKKLLENRSLEKNSKWYEF 369


>gi|227891625|ref|ZP_04009430.1| adenine-specific methyltransferase [Lactobacillus salivarius ATCC
           11741]
 gi|227866541|gb|EEJ73962.1| adenine-specific methyltransferase [Lactobacillus salivarius ATCC
           11741]
          Length = 339

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 122/369 (33%), Gaps = 44/369 (11%)

Query: 85  EYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
           EYSL        + NL++ Y+ +  +  + I ++        +      + K+ + ++  
Sbjct: 11  EYSLLEGAVKELQKNLQTTYLDALIETLENILDNNQVHVEDDK-PDKKTVAKLKELYADS 69

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +    +       + + LI +  SE    A   MTP  +  + + L+            
Sbjct: 70  NI--KNLETDEKRQVIQLLILKSYSEDKIQANHQMTPDSIGMIVSYLI------ELFADS 121

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             + T+ D   GTG  LTD  N++     + +       +G + +    A+         
Sbjct: 122 KKVLTITDICVGTGNLLTDIYNNLDKQNKNIQ------AYGIDNDDTLLALA-------- 167

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             S   +   +NI+     + +     +    + + P G  +    D V         G 
Sbjct: 168 --SISTQFQKQNIELYHQDAIEELLIPKTDLVVGDLPVG--YYPIDDKVSDYITKNNDG- 222

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   S    + +     +L+          I +    +F         ++ +++ +
Sbjct: 223 -------HSYAHYVLIEKSIRQLKEDG-----IGIFIVPRGIFE---VKDSVKLLKYIQK 267

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              ++ ++ LPT+LF        + I+  +  + ++ +  L+     +       K    
Sbjct: 268 VGYLQGLLNLPTELFNDKQSMKSILIVQKKGNKAKQAEEVLLGDFPSFKKQEEFKKFINE 327

Query: 444 INDDQRRQI 452
           I    ++ I
Sbjct: 328 IVSWAKKNI 336


>gi|269839667|ref|YP_003324359.1| hypothetical protein Tter_2649 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269791397|gb|ACZ43537.1| protein of unknown function DUF559 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 1712

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 37/141 (26%), Gaps = 27/141 (19%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----------TLYDPTCGTGG 218
              +    + TP  +V       L+P      +  G  R           + DP  G+G 
Sbjct: 476 SERKQTGSYYTPPSLVRQLIKTALEPVIEQRLKEAGHDRQRQEEALLNLRVCDPASGSGH 535

Query: 219 FLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           FL  A   +                       +       +  +  P    +C   + I 
Sbjct: 536 FLLAAARRIARELARVRTGEEEPSPQAYRQALRDVIRECIYAVDKNPLAVDLCKVALWIE 595

Query: 263 RLESDPRRDLSKN-IQQGSTL 282
              +        N I+ G +L
Sbjct: 596 GYNTGMPLSFLDNHIKCGDSL 616


>gi|85858206|ref|YP_460409.1| type II restriction enzyme, methylase [Syntrophus aciditrophicus
           SB]
 gi|85721297|gb|ABC76240.1| type II restriction enzyme, methylase [Syntrophus aciditrophicus
           SB]
          Length = 1242

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 57/213 (26%), Gaps = 63/213 (29%)

Query: 208 TLYDPTCGTGGFLTDAMNHVA--------------------DCGSHHKIPPILVPHGQEL 247
            + DP CG+G FL   +  +                     D             HG +L
Sbjct: 530 KVVDPACGSGAFLIQTLERLKREHRWVADETDRIVGLAELWDQDVVINDILANNLHGVDL 589

Query: 248 EPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLFTGKR--------------- 291
             E+  +    + +       P   L +NI+ G++L    F   R               
Sbjct: 590 NAESVEITKLALWMHTASAGKPLSSLDRNIRCGNSLVGPDFYANRQPDLFSEDERERINA 649

Query: 292 ---------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP-----KI 331
                          F   + NPP+  K +  +       +     R   G P     + 
Sbjct: 650 FDWKETFPGIFDQGGFDCVIGNPPY-VKLQNFRRVQSSVAEYLLEARRADGAPLYASTRT 708

Query: 332 SDGS--MLFLMHLANKLELPPNGGGRAAIVLSS 362
            +    + F+    + L       GR   +  +
Sbjct: 709 GNFDLYLPFIEKGLDLLRPD----GRMGYIAPN 737


>gi|326445423|ref|ZP_08220157.1| hypothetical protein SclaA2_30352 [Streptomyces clavuligerus ATCC
           27064]
          Length = 436

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 80/255 (31%), Gaps = 47/255 (18%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + Y+ L      E  +G     TP  V  L   L L+P    +         + 
Sbjct: 114 DGYALGDTYQLL----SEEARKGRALCQTPPWVARLLLRLSLEPAMEEWG---PADVRMI 166

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHK------------IPPILVPHGQELEP-----ETHA 253
           DP CGTG     A +      S  +               +    G +L+P       + 
Sbjct: 167 DPACGTGHIAVAAFHMARVATSGGRGSHPGWGGPRAVERALAAVSGVDLDPYAAALTAYR 226

Query: 254 VCVAGMLIRRLESDPRRDLSK-NIQQGSTLSK---DLFTGKRFHYCLSNPPFGK-KWEKD 308
           +  +   +  L  D        N+    +L      L     +H C++NPP+   K    
Sbjct: 227 LLSSSASVLGLSLDRVPASWPVNVAVADSLLDRAEPLLAAGAYHACVANPPYITPKDPAV 286

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  V   +    +G++   LP        F   +  +L +P   GG  A +         
Sbjct: 287 RGQVRAAYPQVAVGKYSLSLP--------FTALMLERLAVP---GGFVAQL-------TS 328

Query: 369 RAGSGESEIRRWLLE 383
            A       RR++ E
Sbjct: 329 NAFMKREFGRRYITE 343


>gi|218134673|ref|ZP_03463477.1| hypothetical protein BACPEC_02576 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990058|gb|EEC56069.1| hypothetical protein BACPEC_02576 [Bacteroides pectinophilus ATCC
           43243]
          Length = 359

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 70/266 (26%), Gaps = 61/266 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +     F T  ++     + L+        +       + +P+ G G F    
Sbjct: 26  EEYSAARATVNNAFYTSPEIAMCINSALV--------QFGFKGGNVLEPSMGIGNFFGSM 77

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +               +G EL+  +  +              +   + NI   +   
Sbjct: 78  PAPMQQSK----------LYGVELDSISGRIAK------------QLYQNANI-SITGFE 114

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              +    F   + N PFG     D    +   +  +                       
Sbjct: 115 NTTYPDNFFDVVMGNVPFGDYKIFDPKYNKYNFRIHDY--------------------FL 154

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A++ +   L           IR++L E   +   + LP   F     
Sbjct: 155 AKALDQARPGGMVAVITTKGTLDKSNPT-----IRKYLAERAELVGAIRLPNTAFKDNAG 209

Query: 401 TNIATYLWILSN--RKTEERRGKVQL 424
           T +   +  L    RK +     V L
Sbjct: 210 TEVTADILFLQKRERKIDIEPDWVHL 235


>gi|254393866|ref|ZP_05008973.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
 gi|197707460|gb|EDY53272.1| DNA methylase [Streptomyces clavuligerus ATCC 27064]
          Length = 440

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 80/255 (31%), Gaps = 47/255 (18%)

Query: 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
               + + Y+ L      E  +G     TP  V  L   L L+P    +         + 
Sbjct: 118 DGYALGDTYQLL----SEEARKGRALCQTPPWVARLLLRLSLEPAMEEWG---PADVRMI 170

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHK------------IPPILVPHGQELEP-----ETHA 253
           DP CGTG     A +      S  +               +    G +L+P       + 
Sbjct: 171 DPACGTGHIAVAAFHMARVATSGGRGSHPGWGGPRAVERALAAVSGVDLDPYAAALTAYR 230

Query: 254 VCVAGMLIRRLESDPRRDLSK-NIQQGSTLSK---DLFTGKRFHYCLSNPPFGK-KWEKD 308
           +  +   +  L  D        N+    +L      L     +H C++NPP+   K    
Sbjct: 231 LLSSSASVLGLSLDRVPASWPVNVAVADSLLDRAEPLLAAGAYHACVANPPYITPKDPAV 290

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           +  V   +    +G++   LP        F   +  +L +P   GG  A +         
Sbjct: 291 RGQVRAAYPQVAVGKYSLSLP--------FTALMLERLAVP---GGFVAQL-------TS 332

Query: 369 RAGSGESEIRRWLLE 383
            A       RR++ E
Sbjct: 333 NAFMKREFGRRYITE 347


>gi|148927825|ref|ZP_01811249.1| type IIS restriction endonuclease, putative [candidate division TM7
           genomosp. GTL1]
 gi|147886828|gb|EDK72374.1| type IIS restriction endonuclease, putative [candidate division TM7
           genomosp. GTL1]
          Length = 1093

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 59/198 (29%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIA-------RLEKA--GLLYKICKNFSGIELHPDTVP 151
           Y+    FS +       + F   +         +  +    L+ + + ++       +  
Sbjct: 274 YLNGGLFSPDVDD---HYKFDRALQSSVPGLVDVPDSWLRKLFDLLELYNFTVDENTSYD 330

Query: 152 DR------VMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATAL----------- 190
                   ++  I+E+L+ R   E  E        F TPR++V                 
Sbjct: 331 IDLSIDPEMLGRIFENLLARINPETGETVRNTTGSFYTPREIVEYMVDQSLKEYLTLQTS 390

Query: 191 -------------LLDPDDALFKESPGM-------IRTLYDPTCGTG----GFLTDAMNH 226
                        LLD ++    +S             + DP CG+G    G L   +  
Sbjct: 391 ISEEKLDSLISFDLLDDEEYPLADSEKQRVIDALSNIKILDPACGSGAFPIGVLQKIVFM 450

Query: 227 VADCGSHHKIPPILVPHG 244
           +       +        G
Sbjct: 451 LQQVDPDSRQWLDKQLSG 468


>gi|319757742|gb|ADV69684.1| hypothetical protein SSUJS14_0589 [Streptococcus suis JS14]
          Length = 1982

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 59/261 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 669 KEYSDMKQSSLTAYYTDPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAM 720

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ +             +G EL+  T A+                +    I+   T+ 
Sbjct: 721 PKHLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV- 760

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   +SN PF              +      R+        D   +   +  
Sbjct: 761 --AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFV 797

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+        G        I + + E       V LP   F     
Sbjct: 798 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAG 852

Query: 401 TNIATYLWILSNRKTEERRGK 421
           T++ T +        +E    
Sbjct: 853 TSVTTDMLFFQKHLNKEYVAD 873


>gi|288800631|ref|ZP_06406089.1| DNA modification methylase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332844|gb|EFC71324.1| DNA modification methylase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 1170

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 91/341 (26%), Gaps = 96/341 (28%)

Query: 19  AEDLWGDFKHTDFGKVI---LP-FTLLRRL-----------ECALEPTRSAVREKYLAFG 63
            + L G+ K+      +   L     L+ L               E    A  +K +   
Sbjct: 192 CDFLTGNTKNN--RDYVKKLLGRLVFLQFLQKKGWMGVPASSKTWEGGDKAYMQKLVEHY 249

Query: 64  GSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLE-SYIAS--FSDNAKAIFEDFD 119
             N        V    F+NT +E   + +  T    N++  Y+    F  +A     + D
Sbjct: 250 KDN--ERLLSDVLEPLFFNTLNESRPNNIVDTRLGKNIKIPYLNGGLFDKDALDS-RNID 306

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV---------MSNIYEHLIRRFGSEV 170
           F  +           ++ + FS      D               + +I+E+L+     E 
Sbjct: 307 FPYSY--------FQELMEFFSEYNFTIDENDPDDAEVGIDPEMLGHIFENLL-----ED 353

Query: 171 SEGAEDFMTPRDVVHLA-----TALLLDPDDALFKESPGM-------------------- 205
           ++    F TP+++V           L    +     +                       
Sbjct: 354 NKDKGAFYTPKEIVQYMCKESIVQYLTTHAEEKLHNAIRKLIVEGIVCPELQTKVVANKI 413

Query: 206 -----IRTLYDPTCGTGGFLTDAMNHVA----------------DCGSHHKIPPILVPHG 244
                   + DP  G+G F   A+N +                       +        G
Sbjct: 414 YDLLKSVKICDPAIGSGAFPMGALNVLYHTRRVLFGFLKSSENFSHAQVKREIIQQNIFG 473

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGST 281
            ++E     +      +  +  +       N    I  G++
Sbjct: 474 VDIEQGAVDIARLRFWLALVVDETEPQPLPNLDYKIMCGNS 514


>gi|154149046|ref|YP_001405769.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
 gi|153805055|gb|ABS52062.1| Cpp14 [Campylobacter hominis ATCC BAA-381]
          Length = 2117

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 130/431 (30%), Gaps = 69/431 (16%)

Query: 136 ICKNFS-----GIELHPDTVPDRVMSNIYEHLI--RRFGSEVSEGAEDFMTPRDVVHLAT 188
           I   F+           +    +  + + ++L+    +          + TP     +  
Sbjct: 408 IISQFTGWGGVSESFDENNQNFKQENTLLKNLLTEEEYKEAKETITNAYFTP----QILV 463

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
             +    + +   S    + + +P+ G+G FL    N               +       
Sbjct: 464 NTIHKALNEMGINSDNNKKRVLEPSAGSGAFLKPNPNF-EYLTIEKNHLSSDMLSLLFPN 522

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
            + +A+                  ++NI              +F   + NPPFG+    D
Sbjct: 523 QKHYAMGYED-----------DLANQNI-------------TKFDAIIGNPPFGEIAIID 558

Query: 309 KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           K+   KE            +P++S  +       ++ L+      G  A V+S+  L   
Sbjct: 559 KNRALKED-----------IPRMSLHNFFAAKSASHMLKDD----GIMAFVISTKFL--- 600

Query: 369 RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
              S     RR++         V LP + F  T+ +T +      K              
Sbjct: 601 --DSKTDTTRRYIDNYATFLGAVRLPENTFDSTHSSTDIVFFKKGKDLNLN--------- 649

Query: 429 DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
           + W ++ N     +IIN+   +   +I  + E    S   +        + +   L    
Sbjct: 650 NNWLNVENFKDTNQIINNYFIQNPNNILGNLEIKIRSHGEELVCTKNSNLNLENELNRFV 709

Query: 489 ILDKTGLARLEADITWRKLSP-LHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKT 547
                 + +   + T       L +    +  K + Q  Y     E ++K+   +N    
Sbjct: 710 ETLPKNIYKFHKNETKINDEIYLDEIIDANYYKDLKQNNYFIFNNEIYIKKGEINNANGI 769

Query: 548 LKVKASKSFIV 558
           L   A+K  + 
Sbjct: 770 L---ATKPELK 777


>gi|86142928|ref|ZP_01061350.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85830373|gb|EAQ48832.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 1026

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 99/369 (26%), Gaps = 95/369 (25%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVS--------------EGA 174
              +L    K  S  + + +   +  + +I+EH +       +              +  
Sbjct: 314 DDEILIDDLKKLSTYDFNTEVDVNI-LGHIFEHSLNEIEEVTAEIEGTVSDQKRTKRKKD 372

Query: 175 EDFMTPRDVVHLAT----------------------ALLLDPDDALFKESPGMIRT---- 208
             F TP+ +                                  D         +      
Sbjct: 373 GVFYTPKYITTYIVANTIGKLCIDKRKELDIEEIEYDDSFLKKDKTLTVKGKKLFKTLTD 432

Query: 209 ---------LYDPTCGTGGFLTDAMNHVADCGSHH------------------KIPPILV 241
                    + DP CG+G FL  A+N + +                       K      
Sbjct: 433 YKNWLTNLKIIDPACGSGAFLNQALNFLIEEHEKIDDIIADLTNSPLRLFDTDKNILENN 492

Query: 242 PHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSK---DLFTGKR------ 291
             G ++  E+  +    + +R  + D     L+ NI+ G++L     D            
Sbjct: 493 LFGVDINEESVEIAQLSLWLRTAKKDRKLSKLNNNIKCGNSLLASEFDWHKEFPNIMKNG 552

Query: 292 -FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F   + NPP+ K+                 G+             L+    A  L++  
Sbjct: 553 GFDVVIGNPPYIKEATNKSAFDGLHDHPCYQGKMD-----------LWYFFGALALDIIK 601

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWI 409
              G    +  ++ + N  A    S+ R  +L    I   +      +F    I T ++I
Sbjct: 602 KDYGLIGYIAPNNWITNDGA----SKFRNIVLNKGKITEFIDFGDFKVFDSAGIQTMIYI 657

Query: 410 LSNRKTEER 418
           +      + 
Sbjct: 658 MQRSDNNKN 666


>gi|124262646|ref|YP_001023116.1| adenine specific DNA methyltransferase, putative [Methylibium
            petroleiphilum PM1]
 gi|124261892|gb|ABM96881.1| adenine specific DNA methyltransferase, putative [Methylibium
            petroleiphilum PM1]
          Length = 1615

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 97/385 (25%), Gaps = 53/385 (13%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCG 215
            N+Y+         V+E      TP  VV      +       F  S       L DP  G
Sbjct: 841  NLYDTFFGSAFPRVAERLGIVYTPIPVVDFIIRSIEVALRRHFDASISDEGVQLLDPFTG 900

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            TG F    +          K   +   H  E+    + +    +              + 
Sbjct: 901  TGTFPVRLLQLGLIRPKALKRKYLSELHANEIVLLAYYIATINIESAFFAVAGEHLPFEG 960

Query: 276  IQQGSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            I    T                            +      SNPP+  + + + D  + E
Sbjct: 961  IVLTDTFQLNEPSQGDVEGGFSIENSSRAKKQRQQPIRVVFSNPPYSAQQDSEGDNNKNE 1020

Query: 316  HKNGELGR-FGPGLPKISDGSMLF------LMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                   R     + +      LF       +             G  A V + S L   
Sbjct: 1021 DYPLLDERIASTYVARSKRK--LFKNMYDSYVRAIRWASDRIADRGVVAFVTNGSFLKAP 1078

Query: 369  RAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINAT 428
                    +R  L+E+                    ++L++ + R +   +G+++     
Sbjct: 1079 NLDG----VRLGLVED-------------------FSHLYVFNCRGSALGQGEIRRKEGG 1115

Query: 429  DLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
             ++           ++  D R Q        + G +           R   +        
Sbjct: 1116 GIFREGSKTQVAITVLVKDPRHQGPSELHYYDIGDYLTTEQKLDAIERLGSIESVPWSRL 1175

Query: 489  ILDKTGLARLEADITWRKLSPLHQS 513
              ++ G    ++D  +    PL   
Sbjct: 1176 QPNEDGDWAEQSDPKFATFLPLGDK 1200


>gi|167647764|ref|YP_001685427.1| helicase-like protein [Caulobacter sp. K31]
 gi|167350194|gb|ABZ72929.1| helicase-like protein [Caulobacter sp. K31]
          Length = 1176

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 122 STIARLEKAGL-LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
             IA L +    L++    F  I+          ++  YE  +  F  ++ E    + TP
Sbjct: 306 RAIATLNRVDRPLFRSRMTFPTIDG---ETSIAAITYFYEPFLEAFDPKLREDLGVWYTP 362

Query: 181 RDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVAD 229
            ++V      +          + G       + DP CGTG +L +    +A+
Sbjct: 363 PEIVRYQVRRVHHLLKTELGRARGLADPDVIVLDPCCGTGAYLLEVARCIAE 414


>gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tuberculosis SUMu007]
 gi|308345340|gb|EFP34191.1| helicase [Mycobacterium tuberculosis SUMu007]
          Length = 1603

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 821  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 880

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 881  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 940

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 941  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1000

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1001 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1060

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1061 GYIDGNTADG 1070


>gi|260187001|ref|ZP_05764475.1| helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289420602|gb|EFD17803.1| helicase [Mycobacterium tuberculosis CPHL_A]
          Length = 1606

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|219557991|ref|ZP_03537067.1| helicase [Mycobacterium tuberculosis T17]
 gi|260201132|ref|ZP_05768623.1| helicase [Mycobacterium tuberculosis T46]
 gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tuberculosis T46]
 gi|289570133|ref|ZP_06450360.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289416440|gb|EFD13680.1| helicase [Mycobacterium tuberculosis T46]
 gi|289543887|gb|EFD47535.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
          Length = 1606

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|215430948|ref|ZP_03428867.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|289694719|gb|EFD62148.1| helicase [Mycobacterium tuberculosis EAS054]
          Length = 1606

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|215427390|ref|ZP_03425309.1| helicase [Mycobacterium tuberculosis T92]
 gi|289750611|ref|ZP_06509989.1| helicase [Mycobacterium tuberculosis T92]
 gi|289691198|gb|EFD58627.1| helicase [Mycobacterium tuberculosis T92]
          Length = 1161

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224990404|ref|YP_002645091.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
            172]
 gi|121493557|emb|CAL72031.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur
            1173P2]
 gi|224773517|dbj|BAH26323.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
            172]
          Length = 1606

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycobacterium bovis AF2122/97]
 gi|31618798|emb|CAD96902.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
          Length = 1606

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|88800890|ref|ZP_01116443.1| hypothetical protein MED297_00010 [Reinekea sp. MED297]
 gi|88776335|gb|EAR07557.1| hypothetical protein MED297_00010 [Reinekea sp. MED297]
          Length = 250

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 17/179 (9%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +L+++ K ++ + +  D   D  +  +Y  L         +    F TP  V  +   + 
Sbjct: 61  VLFELGKQYAEMVIEADPFSDL-LGLVYMEL---GSEYGKKRMGQFFTPDAVSTMCAEMT 116

Query: 192 LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                      P  + TL +P  G G  L   +              +       L    
Sbjct: 117 AP----YSLTEPDRLHTLLEPASGAGSMLLVYVRVWLSRFHRVDNLGVYAVDLDSLCARM 172

Query: 252 HAV-CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            A+  ++  L+   +          + QG+ L+            L+  P   +   ++
Sbjct: 173 TALQLLSNCLVHPYDLGEIV-----VYQGNALADP---DCWCRIVLATLPAHFERSDER 223


>gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosis CDC1551]
 gi|215404161|ref|ZP_03416342.1| helicase [Mycobacterium tuberculosis 02_1987]
 gi|215446243|ref|ZP_03432995.1| helicase [Mycobacterium tuberculosis T85]
 gi|218753743|ref|ZP_03532539.1| helicase [Mycobacterium tuberculosis GM 1503]
 gi|253798919|ref|YP_003031920.1| helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254364844|ref|ZP_04980890.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
            Haarlem]
 gi|254551049|ref|ZP_05141496.1| helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289554192|ref|ZP_06443402.1| helicase [Mycobacterium tuberculosis KZN 605]
 gi|289746023|ref|ZP_06505401.1| helicase [Mycobacterium tuberculosis 02_1987]
 gi|289758143|ref|ZP_06517521.1| helicase [Mycobacterium tuberculosis T85]
 gi|289762180|ref|ZP_06521558.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294996965|ref|ZP_06802656.1| helicase [Mycobacterium tuberculosis 210]
 gi|297634601|ref|ZP_06952381.1| helicase [Mycobacterium tuberculosis KZN 4207]
 gi|297731589|ref|ZP_06960707.1| helicase [Mycobacterium tuberculosis KZN R506]
 gi|306780045|ref|ZP_07418382.1| helicase [Mycobacterium tuberculosis SUMu002]
 gi|306784792|ref|ZP_07423114.1| helicase [Mycobacterium tuberculosis SUMu003]
 gi|306789151|ref|ZP_07427473.1| helicase [Mycobacterium tuberculosis SUMu004]
 gi|306793485|ref|ZP_07431787.1| helicase [Mycobacterium tuberculosis SUMu005]
 gi|306797869|ref|ZP_07436171.1| helicase [Mycobacterium tuberculosis SUMu006]
 gi|306803749|ref|ZP_07440417.1| helicase [Mycobacterium tuberculosis SUMu008]
 gi|306968146|ref|ZP_07480807.1| helicase [Mycobacterium tuberculosis SUMu009]
 gi|313658922|ref|ZP_07815802.1| helicase [Mycobacterium tuberculosis KZN V2475]
 gi|5042237|emb|CAB44655.1| hypothetical protein RvD1-Rv2024c' [Mycobacterium bovis BCG]
 gi|13881753|gb|AAK46361.1| helicase, putative/conserved hypothetical protein [Mycobacterium
            tuberculosis CDC1551]
 gi|134150358|gb|EBA42403.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
            Haarlem]
 gi|253320422|gb|ACT25025.1| helicase [Mycobacterium tuberculosis KZN 1435]
 gi|289438824|gb|EFD21317.1| helicase [Mycobacterium tuberculosis KZN 605]
 gi|289686551|gb|EFD54039.1| helicase [Mycobacterium tuberculosis 02_1987]
 gi|289709686|gb|EFD73702.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289713707|gb|EFD77719.1| helicase [Mycobacterium tuberculosis T85]
 gi|308327082|gb|EFP15933.1| helicase [Mycobacterium tuberculosis SUMu002]
 gi|308330525|gb|EFP19376.1| helicase [Mycobacterium tuberculosis SUMu003]
 gi|308334359|gb|EFP23210.1| helicase [Mycobacterium tuberculosis SUMu004]
 gi|308338159|gb|EFP27010.1| helicase [Mycobacterium tuberculosis SUMu005]
 gi|308341852|gb|EFP30703.1| helicase [Mycobacterium tuberculosis SUMu006]
 gi|308349642|gb|EFP38493.1| helicase [Mycobacterium tuberculosis SUMu008]
 gi|308354271|gb|EFP43122.1| helicase [Mycobacterium tuberculosis SUMu009]
 gi|323719430|gb|EGB28558.1| helicase [Mycobacterium tuberculosis CDC1551A]
 gi|326903639|gb|EGE50572.1| helicase [Mycobacterium tuberculosis W-148]
 gi|328458676|gb|AEB04099.1| helicase [Mycobacterium tuberculosis KZN 4207]
          Length = 1606

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 61/250 (24%), Gaps = 31/250 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   R    + +E      TP +VV                +        + D 
Sbjct: 824  VIAELYEKFFRIGFKKQAEALGIVYTPVEVVDFIVRAADFVSRKHFGRGLTDEGVHILDG 883

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  +       +          H  E+    + +    +      +    +D
Sbjct: 884  FAGTGTFITRLLQSDLITAADLTRKYSQELHANEIMLLAYYIAAVNIESTYHALAGKTAD 943

Query: 268  PRRDLS-KNIQQGSTL----SKDLFTGKRFHY---------------CLSNPPFGKKWEK 307
                     +    T     + D      F Y                + NPP+      
Sbjct: 944  ADAYEPFPGMALADTFQISEAGDSMDAIMFPYNNARILRQLATPISVIIGNPPYSVGQSS 1003

Query: 308  DKDAVEKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSS 362
              D           GR      K S   +   L+  ++             G    V + 
Sbjct: 1004 ANDLNANVKYPTLDGRIEQTYAKRSTAQLKNSLYDSYIRAFRWATDRIGDNGVVGFVSNG 1063

Query: 363  SPLFNGRAGS 372
              +    A  
Sbjct: 1064 GYIDGNTADG 1073


>gi|54295178|ref|YP_127593.1| hypothetical protein lpl2258 [Legionella pneumophila str. Lens]
 gi|53755010|emb|CAH16498.1| hypothetical protein lpl2258 [Legionella pneumophila str. Lens]
          Length = 287

 Score = 46.5 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 58/261 (22%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKN-----FSGIELHPDTVPDRVMSNIYEHLIRRFGS- 168
            + F   +   +LE   LL  +        F+    HPD +        Y  +I++    
Sbjct: 12  LQQFKVKNQETKLEAELLLCHVLNKNRAYLFA----HPDALVSPEQIETYLQMIKQRAEG 67

Query: 169 ---EVSEGAEDFMT-----------PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
                  G  +F +           PR        L L+              ++ D   
Sbjct: 68  LPIAYITGQREFWSLSLKVTPNVLIPRHETEHLVELALELIPD------KENVSVLDLGT 121

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G                 K  P+      +   E   +         L          
Sbjct: 122 GSGAIALAL----------AKERPLWRIDACDFSKEALELACYNAKTLGLN--------- 162

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           NI    +   +    K++H  +SNPP+  +           H      RF P    +S  
Sbjct: 163 NINFCHSYWFNNLPLKQYHAIVSNPPYIAE--------NDPHLKQGDVRFEPTSALVSSQ 214

Query: 335 S-MLFLMHLANKLELPPNGGG 354
             +  L ++           G
Sbjct: 215 DGLADLQYIIQHSYEYLLPDG 235


>gi|121582883|ref|YP_973325.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
 gi|120596145|gb|ABM39583.1| helicase, C-terminal [Polaromonas naphthalenivorans CJ2]
          Length = 1649

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 71/260 (27%), Gaps = 57/260 (21%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +          + T  +V+     L+        ++       + +P+ GTG F+     
Sbjct: 124 YAQARDSVLTAYYTEPEVIQAMWGLV--------QKMGFKGGKVLEPSAGTGNFIGAMPV 175

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            + +                E +  +  +C A   +              I         
Sbjct: 176 ALREAS---------TITMVEPDSVSATICKA---LYADSDTLVHTCGMEIAP------- 216

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               + F   + N PFG     D        K                       +   K
Sbjct: 217 -LRSESFDVVIGNVPFGNYRVHDSKF--DCMKLVIHD------------------YAIAK 255

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---TN 402
                  GG  A++ S      G     +S  R ++ E   +   + LP+  F R   T+
Sbjct: 256 SLDLVRAGGIVAVITS-----TGTMDKPKSNFREYIAERADLVTAIRLPSGAFTRLGETD 310

Query: 403 IATYLWILSNRKTEERRGKV 422
           +AT + +L   K +     V
Sbjct: 311 VATDILVLRK-KPKVADSHV 329


>gi|320321244|gb|EFW77379.1| hypothetical protein PsgB076_28855 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|330882547|gb|EGH16696.1| hypothetical protein Pgy4_27040 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 578

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 76/274 (27%), Gaps = 46/274 (16%)

Query: 104 IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD-RVMSNIYEHL 162
           I   S + +A  + F    T+  L +A     + +    I    D       +   Y  +
Sbjct: 43  IDIVSPDLRAPLQPF----TVEVLPQAA--AALAETIGRIAASFDAETAAYQIGLTYTGM 96

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +     E       F TP  +       +                 + DP CG G FL  
Sbjct: 97  L---PLEHRGTYGVFYTPPVLTARLIDQVTTAGMD------WATCRVLDPACGGGAFLVP 147

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ----- 277
               + +         ++   G  L    + +   G  + ++  D        I      
Sbjct: 148 IAQRIINEAKGCSPKLLMQSIGNRLRG--YEIDPFGAWLTQVTLDAVVLPVSRIAGRRLP 205

Query: 278 ----QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
                  +L +      RF   + NPP+G+   K        +K    G           
Sbjct: 206 VMVTVCDSLRRSPVRD-RFDLVIGNPPYGR--AKLDPETRDRYKRSLYG----------H 252

Query: 334 GSM--LFLMHLANKLELPPNGGGRAAIVLSSSPL 365
            ++  LF        +     GG  A V  +S L
Sbjct: 253 ANLYGLFTDLALRHTK----LGGVIAYVTPTSFL 282


>gi|116333801|ref|YP_795328.1| adenine-specific DNA methylase [Lactobacillus brevis ATCC 367]
 gi|116099148|gb|ABJ64297.1| Adenine-specific DNA methylase [Lactobacillus brevis ATCC 367]
          Length = 340

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 39/234 (16%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  + ++   L+         E      T+ D T GTG  LT  +  + D  +      
Sbjct: 101 TPDTIAYIMGYLVAR------LEKNKQHLTVLDLTVGTGNLLTAVLAQLKDVIA-----G 149

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            +  +G + +    A+           SD +R   + I Q   L  +          +++
Sbjct: 150 EIAAYGVDNDDTMLAIAQT-------SSDLQRLPVELIHQ-DAL--EQLLVPASDLIVAD 199

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
            P G     D  A  + H                     F+ HL  +  +     G   +
Sbjct: 200 LPIGYYPIDDNAANFQTHATEGHS---------------FVHHLLLEQAVNQLTPGGIGV 244

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            L  + LF   A  G   + +WL  N  ++ ++ LP++LF   N    +  L  
Sbjct: 245 FLVPTQLFQTEAAKG---LLKWLPNNVYLQGLLNLPSELFANANAQKAILFLQK 295


>gi|150008154|ref|YP_001302897.1| putative helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936578|gb|ABR43275.1| putative helicase [Parabacteroides distasonis ATCC 8503]
          Length = 1664

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 96/360 (26%), Gaps = 52/360 (14%)

Query: 128  EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +   +L K  +N        D +  +   + N+YE   +    +  +      TP + V 
Sbjct: 844  KDTEVLNKFYENVRMNVGDIDNLEGKQTLIKNLYEKFFKGAFPKTVDKLGIVYTPVECVD 903

Query: 186  LATALLLDPDDALFK-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                 + D     F          + DP  GTG F+T  +          +       H 
Sbjct: 904  FIIHSVDDILRKEFDCSLSDENVHILDPFTGTGTFITRLLQSGLIRPEDLERKYKNEIHC 963

Query: 245  QELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK------------------ 284
             EL    + +    +  +   L         + I    T                     
Sbjct: 964  NELVLLAYYIADVNIESVFHSLVKRDTYLPFEGICLTDTFQTTENEENVLDQTWFPENAA 1023

Query: 285  --DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFL 339
              D          + NPP+    +   D  +         R      K +   + + L+ 
Sbjct: 1024 NVDKQKKAPVRVIMGNPPYSVGQKSANDNAQNLSYAHLDKRIAETYAKAAQATNKNSLYD 1083

Query: 340  MHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             ++               GG  A + + + + +G A  G    R+ L +      +  L 
Sbjct: 1084 SYIKAFRWASDRIADCKDGGVVAFISNGAWI-DGNAQEG---FRKCLEDEYSSVYVFNLR 1139

Query: 395  TD--------------LF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
             +              +F   +     +  L     ++ +  +   +  D  +  +   K
Sbjct: 1140 GNQRTSGELSRKEGGKIFGSGSRTPISITFLIKNPKKKGKATILYHDIGDYLSREQKLKK 1199


>gi|90961409|ref|YP_535325.1| adenine-specific methyltransferase [Lactobacillus salivarius
           UCC118]
 gi|90820603|gb|ABD99242.1| Adenine-specific methyltransferase [Lactobacillus salivarius
           UCC118]
          Length = 346

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 122/369 (33%), Gaps = 44/369 (11%)

Query: 85  EYSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
           EYSL        + NL++ Y+ +  +  + I ++        +      + K+ + ++  
Sbjct: 11  EYSLLEEAVKELQKNLQTTYLDALIETLENILDNNQVHVEDDK-PDKKTVAKLKELYADS 69

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
            +    +       + + LI +  SE    A   MTP  +  + + L+            
Sbjct: 70  NI--KNLEADEKRQVIQLLILKSYSEDKIQANHQMTPDSIGMIVSYLI------ELFADS 121

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             + T+ D   GTG  LTD  N++     + +       +G + +    A+         
Sbjct: 122 KKVLTITDICVGTGNLLTDIYNNLDKQNKNIQ------AYGIDNDDTLLALA-------- 167

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
             S   +   +NI+     + +     +    + + P G  +    D V         G 
Sbjct: 168 --SISTQFQKQNIELYHQDAIEELLIPKTDLVVGDLPVG--YYPIDDKVSDYITKNNDG- 222

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                   S    + +     +L+          I +    +F         ++ +++ +
Sbjct: 223 -------HSYAHYVLIEKSIRQLKEDG-----IGIFIVPRGIFE---VKDSVKLLKYIQK 267

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI 443
              ++ ++ LPT+LF        + ++  +  + ++ +  L+     +       K    
Sbjct: 268 VGYLQGLLNLPTELFNDKQSMKSILVVQKKGNKAKQAEEVLLGDFPSFKKQEEFKKFINE 327

Query: 444 INDDQRRQI 452
           I    ++ I
Sbjct: 328 IVSWAKKNI 336


>gi|325855448|ref|ZP_08171838.1| hypothetical protein HMPREF9303_0859 [Prevotella denticola CRIS
           18C-A]
 gi|325483825|gb|EGC86781.1| hypothetical protein HMPREF9303_0859 [Prevotella denticola CRIS
           18C-A]
          Length = 1491

 Score = 46.5 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 40/242 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G    +          +   
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + +R    +   +L                  ++    SN PFG     D  
Sbjct: 166 LHPYGKGNIFVRNEPFEAIGELE--------------NKDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGILAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    +  Q +
Sbjct: 260 E----VIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEGIEQQFV 315

Query: 426 NA 427
             
Sbjct: 316 ET 317


>gi|325981286|ref|YP_004293688.1| DNA methyltransferase [Nitrosomonas sp. AL212]
 gi|325530805|gb|ADZ25526.1| DNA methyltransferase [Nitrosomonas sp. AL212]
          Length = 924

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 77/265 (29%), Gaps = 56/265 (21%)

Query: 98  NNLESYIASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
            NL+  +  F      +FE    F+S  + + +A LLY    ++SGI          +  
Sbjct: 240 KNLDDTLTRFPYINGKLFEERLPFASFDSHM-RAALLYCCALDWSGI-------SPAIFG 291

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA-------------LFKESP 203
           +++++++               T  + +      L   +                   + 
Sbjct: 292 SLFQNIMDE-TPNARRNLGAHYTTEENILKLIRPLFLDELHAEFAKIKHNTKRLQIFHNK 350

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSH-----------------HKIPPILVPHGQE 246
                  DP CG G FL  A   +                            +   HG E
Sbjct: 351 LASLKFLDPACGCGNFLVIAYRELRRLELEVLRALHDSGQQTLDITSIIQVDVDQFHGIE 410

Query: 247 LEPETHAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTL---SKDLFTGK 290
           +E     +    + +   + +                + S +I  G+ L      +   +
Sbjct: 411 IEEFPAQIAQVALWLTDHQMNALVSEEFGQYFIRLPLNKSAHIVHGNALRLNWNTVIAAE 470

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKE 315
             +  + NPPF  K  +  + +  +
Sbjct: 471 ECNVVMGNPPFIGKQYQTDEQIADK 495


>gi|325297206|ref|YP_004257123.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
 gi|324316759|gb|ADY34650.1| N-6 DNA methylase [Bacteroides salanitronis DSM 18170]
          Length = 1144

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 75/291 (25%), Gaps = 62/291 (21%)

Query: 62  FGGSNIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFD 119
                 +      V    F+NT +E     +  T    N++  Y+       K   +  D
Sbjct: 248 IEHYEGNDRILSDVLEVLFFNTLNEKREGDIADTRLGENIKIPYLNGGLFE-KDSIDKLD 306

Query: 120 FS---STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
                S    L     +Y    + +  +     +   ++ +I+E+L+     E ++    
Sbjct: 307 IDFPYSYFKELMDFFSMYNFTIDENDPDDSEVGIDPEMLGHIFENLL-----EDNKDKGA 361

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPG-------------------------------M 205
           F TP+++V       +       + +                                  
Sbjct: 362 FYTPKEIVQYMCRQSVIQYLKTHELNEQYAEPIERLINDGIVMPILQTKTVASRLMQLLK 421

Query: 206 IRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPP------------ILVPHGQELEP 249
              + DP  G+G    G L      +    SH +                    G ++E 
Sbjct: 422 DVKVCDPAIGSGAFPMGILYVLYYAIHHLQSHAEPNKSFDSTQTKLDIIQNNIFGVDIEQ 481

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSKDLFTGKRFHYCL 296
               +      +  +  +       N    I  G++L       +      
Sbjct: 482 GAVDIARLRFWLALVVDEVSPQPLPNLDYKIMCGNSLLNRYDIDESLEAIF 532



 Score = 37.6 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPP+G  +   +  V K   +    R     P+          +  +       
Sbjct: 664 FDIIIGNPPYGASFSTAEKNVLKARYSDVHMR----TPES-------YCYFISLAFRLAR 712

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
             G  + ++ ++  F         + R  LL    +   + L  + F   ++ T +++
Sbjct: 713 NTGVVSYIVPNNMFFQNENE----KTRSLLLFRHQLVRAINLGDNTFENADVPTCIFV 766


>gi|325563988|gb|ADZ31407.1| M.TliI [Thermococcus litoralis]
          Length = 567

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 31/252 (12%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +     +TP ++        +     L            +P+CG G FL  A+  + + G
Sbjct: 11  KKLGQVLTPFEIAEFLVNWAIKSPKDLI----------LEPSCGDGIFLRAAIRRLMELG 60

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGML--------IRRLESDPRRDLSKNIQQGSTLS 283
           +  +       +G E++ E        +L        +   +              + L+
Sbjct: 61  ASPES-ISKQVYGVEIDSEILEKTKKLLLTEFSFVPTLINADFFDLEPPRGQQTLNNLLT 119

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  R    + NPP+ +          +E         G  LP+++   + F++H  
Sbjct: 120 APKIP--RVDVIVGNPPYIRYQSFSGK--TREKALRTALEEGVKLPELTASWVPFVIHAE 175

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             L+      GR A+VL S  L  G A       R+WLL+      I++    +F     
Sbjct: 176 KFLKKD----GRLAMVLPSKLLHVGYA----KPFRKWLLKKFSNITIISFERRVFPGILE 227

Query: 404 ATYLWILSNRKT 415
            T L + S    
Sbjct: 228 DTVLLLASKSGP 239


>gi|237719896|ref|ZP_04550377.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450448|gb|EEO56239.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1023

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K       G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|218128937|ref|ZP_03457741.1| hypothetical protein BACEGG_00509 [Bacteroides eggerthii DSM 20697]
 gi|217988900|gb|EEC55217.1| hypothetical protein BACEGG_00509 [Bacteroides eggerthii DSM 20697]
          Length = 252

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 28/140 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        +         + + + DP
Sbjct: 85  DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGE-------TAIGKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + V  ML+     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVSRTCCLMTVCNMLVHGCIGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF 292
              +    +L  + F     
Sbjct: 180 ---VIHHDSLCPENFMDGWM 196


>gi|197294201|ref|YP_001798742.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
 gi|171853528|emb|CAM11378.1| Putative N6 adenine-specific DNA methyltransferase [Candidatus
           Phytoplasma australiense]
          Length = 225

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 81/287 (28%), Gaps = 74/287 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  +      +L                 + DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKATIYTPSWLSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  T                       N+   
Sbjct: 52  LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395
           +L  +               IVL +   F     S  S+  +  L  +   I +I+ LP 
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIIGLPK 178

Query: 396 DLFFRTNIATYLWILSNR--KT------EERRGKVQLINATDLWTSI 434
           D+F      + + I +    K          +     IN+++ +   
Sbjct: 179 DVFENVVFHSEILIFNVNHLKPHYFCGIATNQNDYLFINSSNWFIPK 225


>gi|206601478|gb|EDZ37963.1| superfamily II DNA/RNA helicase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 1309

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 95/312 (30%), Gaps = 77/312 (24%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-YNTSEYSLSTL----- 91
           F  L  +E       S VR++ +        L     ++     Y+       +L     
Sbjct: 302 FLFLLTVEDRNLLHESRVRKEAIDIYQDGYSLSRLRILSRKRRAYDRFPDLWKSLQIVFG 361

Query: 92  ----GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKI--CKNFSGIE- 144
               G+++    L      FS++  ++ E        + ++ A LL  I     F   + 
Sbjct: 362 GLRSGASDIG--LAPLGGLFSEDQCSLLE-------TSEIDNAHLLSAIREIAYFETGDT 412

Query: 145 ---LHPDTVPDRVMSNIYEHLIR-------------------------RFGSEVS---EG 173
              ++   +    + ++YE L+                          +  S      + 
Sbjct: 413 LARINYRDMDTEELGSVYESLLELHPVIRFDRTPWTFGFVGFGDESGNKGASSSGSQRKS 472

Query: 174 AEDFMTPRDVVH-LATALLLDPDDALFKESPGMIRT------LYDPTCGTGGFLTDAMNH 226
              + TP  +V  L  + L        ++ P   R       + DP+CG+G FL  A   
Sbjct: 473 TGSYYTPDSLVRELIGSALEPVIKKTLEDHPDYPRKALLALRIIDPSCGSGHFLLSAARR 532

Query: 227 VADCGSHH----------------KIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPR 269
           +A   +                  +        G ++ P    +C   + +  +E   P 
Sbjct: 533 LALEVARIDADSETPDEATRRHALREVVQHTIFGVDINPLAVELCRTALWLETVEPGKPL 592

Query: 270 RDLSKNIQQGST 281
             L  +I  G++
Sbjct: 593 GFLDNHILCGNS 604


>gi|186469979|gb|ACC85607.1| MmeI [Methylophilus methylotrophus]
          Length = 919

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 106/351 (30%), Gaps = 64/351 (18%)

Query: 60  LAFGGSNIDLESFVKVAGYSFY-NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF 118
            +     I+ ++    +  + + NT  Y L+T      + NL+ ++A+F      +FE+ 
Sbjct: 207 KSLFQEYIETKTLEDGSDLAHHINTLFYVLNTPEQKRLK-NLDEHLAAFPYINGKLFEEP 265

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
              +   +  +  LL     +   ++     +   +  ++++ ++    ++         
Sbjct: 266 LPPAQFDKAMREALL-----DLCSLDW--SRISPAIFGSLFQSIMD---AKKRRNLGAHY 315

Query: 179 TPRDVVHLATALLLDPD-------------DALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           T    +      L   +               L         T +DP CG G FL     
Sbjct: 316 TSEANILKLIKPLFLDELWVEFEKVKNNKNKLLAFHKKLRGLTFFDPACGCGNFLVITYR 375

Query: 226 HVADCG-----------------SHHKIPPILVPHGQELEPETHAVC---------VAGM 259
            +                      H     +    G E+E     +             M
Sbjct: 376 ELRLLEIEVLRGLHRGGQQVLDIEHLIQINVDQFFGIEIEEFPAQIAQVALWLTDHQMNM 435

Query: 260 LIRRLESDPRR----DLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
            I     +         + +I   + L     D+   K+  + L NPPF  K ++     
Sbjct: 436 KISDEFGNYFARIPLKSTPHILNANALQIDWNDVLEAKKCCFILGNPPFVGKSKQTPGQ- 494

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
               K   L  FG  L   SD  ++   +      +  N   R A V ++S
Sbjct: 495 ----KADLLSVFGN-LKSASDLDLVAAWYPKAAHYIQTNANIRCAFVSTNS 540


>gi|292557960|gb|ADE30961.1| putative helicase [Streptococcus suis GZ1]
          Length = 2554

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 67/492 (13%), Positives = 140/492 (28%), Gaps = 116/492 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S        F TP +V      +L            G    L +P+CG G F+   
Sbjct: 1041 EEYASARESTLTAFYTPPEVSTAIYKVL-----EQMGFQEG---NLLEPSCGIGNFIGML 1092

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               + +             +G EL+  +  +     L ++     +     N+       
Sbjct: 1093 PKSMENAK----------VYGVELDTISAGIAQQ--LYQKSSIAAQGFEEVNV------- 1133

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                    F   + N PFG                     F     +    + L   +  
Sbjct: 1134 ----PDSFFDGVIGNVPFGD--------------------FKVSDKRYDKYNFLIHDYFF 1169

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A+V S   +         S +R+++ +   +   + LP D F     
Sbjct: 1170 AKSLDKLRPGGVMALVTSKGTMDKEN-----SNVRKYIAQRAELLGAIRLPNDTFKGNAG 1224

Query: 401  TNIATYLWILSNRKT--EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV- 457
            T + + +  L  R    +     V L +  +    + +   +   +   + + +   +  
Sbjct: 1225 TEVVSDILFLQKRDRLIDIEPDWVHL-DTDENGIRMNSYFVQHPEMILGEMKMVSGRFGP 1283

Query: 458  -----SRENGKFSRM----LDYRTFGYRRIKV------------LRPLRMSFILD----- 491
                 + EN   S +    +          +V              P   +F        
Sbjct: 1284 EATCEAFENADLSELLNEAVSNIHGEISEYEVADELEEEDNSIPADPTVRNFSYTVLDDK 1343

Query: 492  -----KTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNE-- 544
                  + ++ +E   T             D ++ +++ +    + +S +K++ K     
Sbjct: 1344 IYFRENSRMSPVEVSATAENRIK-GMIGIRDCVRNLIE-LQTEDYPDSEIKQAQKKLNTL 1401

Query: 545  ----AKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEYENVPYLESIQ 600
                 K   +  S++   AF +        A  V + +GE     ++             
Sbjct: 1402 YDSFTKKYGLINSRANTSAFSDDSSYALLSALEVINEDGELERKADM------------- 1448

Query: 601  DYFVREVSPHVP 612
             +F R + PH P
Sbjct: 1449 -FFKRTIKPHKP 1459


>gi|302865793|ref|YP_003834430.1| hypothetical protein Micau_1292 [Micromonospora aurantiaca ATCC
           27029]
 gi|302568652|gb|ADL44854.1| hypothetical protein Micau_1292 [Micromonospora aurantiaca ATCC
           27029]
          Length = 1174

 Score = 46.5 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 88/314 (28%), Gaps = 71/314 (22%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           D +  R + ++Y+ L     +   +      TP  V         +P    F        
Sbjct: 169 DDLNTRFLGDLYQDL----STHAKKTYALLQTPDFVEEFILDRTFEPAVREFGL---PET 221

Query: 208 TLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVP---HGQELEPETHAVCVAG 258
           ++ DPTCG+G FL  A   +       +  +  ++          G ++ P   A+    
Sbjct: 222 SVIDPTCGSGHFLLGAFGQLVRKWREREPATDIRVLVERALGQVTGVDINPFAVAIARFR 281

Query: 259 MLIRRL------ESDPRRDLSKNIQQGSTLSK---------------------------- 284
           +LI  +        +        +  G +L +                            
Sbjct: 282 LLIAAMRECGLTSLERTPSWPVRVATGDSLLQWGRKSRHQGDLIAMLEGQNAFAYAAEDA 341

Query: 285 ----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
               D     ++   + NPP+    +K ++ + ++       R              F  
Sbjct: 342 DVLADYLREGQYTVVVGNPPYITVADKARNQLYRDIYPDVCHRQYALTVP-------FAK 394

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN---DLIE--AIVALPT 395
              +        G  A  V        G A   + E  + L+E+     +E  AIV    
Sbjct: 395 RFFDLARQSDEHGEGAGHV----GQITGNAFM-KREFGKKLIEDYFAHQVELTAIVDTSG 449

Query: 396 DLFFRTNIATYLWI 409
                    T + +
Sbjct: 450 AYIPGHGTPTAILV 463


>gi|323969194|gb|EGB64496.1| hypothetical protein ERHG_04662 [Escherichia coli TA007]
          Length = 2255

 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 119/384 (30%), Gaps = 74/384 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 89  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++ + L ++         ++               E      +   +
Sbjct: 273 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319

Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             G++ RI+V    ++     K   + R E+ I W  L+    S   D++     ++   
Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLNMAEPSPTADVVDEGEMRLING 379

Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553
            W +      I+S+  K LK+  +
Sbjct: 380 VWQKYAGGRWIESDAGKELKIDVA 403


>gi|265763566|ref|ZP_06092134.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256174|gb|EEZ27520.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1038

 Score = 46.5 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM           
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAM----------- 142

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G       +A+    ++   + S    +         T+ +  F    F   
Sbjct: 143 ----SGTYG-------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K       G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|324111110|gb|EGC05096.1| hypothetical protein ERIG_04245 [Escherichia fergusonii B253]
          Length = 2255

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 120/384 (31%), Gaps = 74/384 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 89  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            + + E   K+ L++ + L ++         ++               E      +   +
Sbjct: 273 RKHSAEMAEKIPLVDKSTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319

Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             G++ RI+V    ++     K   + R E+ I W  L     S   D++     ++   
Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVDEGEMRLING 379

Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553
            W +      I+++  K LK+ A+
Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403


>gi|254446640|ref|ZP_05060116.1| hypothetical protein VDG1235_4891 [Verrucomicrobiae bacterium
           DG1235]
 gi|198260948|gb|EDY85256.1| hypothetical protein VDG1235_4891 [Verrucomicrobiae bacterium
           DG1235]
          Length = 1284

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 79/302 (26%), Gaps = 82/302 (27%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA---IFEDFDFS---- 121
            E+    A   F N   +    L  T   +  + Y+  FS NAK    + +   F     
Sbjct: 375 EEALAHFADIPFLNGGLF--ECLDRTEGDSEKKRYLDGFSRNAKKRPHVPDHLFFDSGET 432

Query: 122 --------STIARLEKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG 167
                       + E+   L  I     F+ +E  P          ++  ++E+L+  + 
Sbjct: 433 ADLSSAYGDKKRKTEQVTGLITILNSYKFTIVENTPIDQEIALDPELLGKVFENLLASYN 492

Query: 168 SEVS----EGAEDFMTPRDVVHLATA--------LLLDPDDALFKESPGMI--------- 206
            E      +    F TPR +V              +L     + +               
Sbjct: 493 EETKTTARKQTGSFYTPRTIVDYMVNESLKAHLARVLVEKADMLESKAKKGLDNLFSYTD 552

Query: 207 -------------------RTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILVP- 242
                                + DP CG+G    G L   +  +      ++        
Sbjct: 553 EEPTFTTSQVNTLIAAIDQVKILDPACGSGAFPMGVLHKLVYILGKLDRDNEGWKQTQLA 612

Query: 243 --------------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
                           +  +     + +    +  ++  P       ++   +L  D  T
Sbjct: 613 KLDSAPMREALEAAFEENNDDYGRKLYLIENCLYGVDIQPIAIQITKLRFFISLVCDQKT 672

Query: 289 GK 290
            +
Sbjct: 673 NR 674


>gi|88192890|pdb|2F8L|A Chain A, Crystal Structure Of A Putative Class I
           S-Adenosylmethionine-Dependent Methyltransferase
           (Lmo1582) From Listeria Monocytogenes At 2.20 A
           Resolution
          Length = 344

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 40/233 (17%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
                 ++ DP CGT   LT  +N +       K    +   G +++    ++      +
Sbjct: 127 QKKKNVSILDPACGTANLLTTVINQL-----ELKGDVDVHASGVDVDDLLISLA-----L 176

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              +   ++           L +D             +S+ P G  +  D++A   E   
Sbjct: 177 VGADLQRQKXTL--------LHQDGLANLLVDPVDVVISDLPVGY-YPDDENAKTFELCR 227

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
            E   F            LF+       +     GG    ++  +          +    
Sbjct: 228 EEGHSF---------AHFLFIEQGXRYTKP----GGYLFFLVPDAXFGTSDFAKVD---- 270

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430
           +++ +N  IE I+ LP  LF        + IL     + +   +V L N + L
Sbjct: 271 KFIKKNGHIEGIIKLPETLFKSEQARKSILILEKADVDVKPPKEVLLANLSSL 323


>gi|10954867|ref|NP_053287.1| hypothetical protein pTi-SAKURA_p049 [Agrobacterium tumefaciens]
 gi|6498220|dbj|BAA87672.1| tiorf47 [Agrobacterium tumefaciens]
          Length = 1693

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 72/274 (26%), Gaps = 60/274 (21%)

Query: 153 RVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             + +  E  +    + S          TP  +V    +          +        + 
Sbjct: 140 DEIGSDLEDAVGETDYASLARCTQYAHFTPEFIVRAIWS--------GLQRLGWRGGRVL 191

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P  GTG F       + D              G EL+P T  +                
Sbjct: 192 EPGIGTGLFPALMPEALRDLS---------HVTGVELDPVTACIVR------------LL 230

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I  G   ++       F   + NPPF  +  +   A                   
Sbjct: 231 QPRARILTGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY-------- 280

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+    + L+     G  AA V S     +G     +S  R+ +     + A 
Sbjct: 281 -------FVARSIDLLKP----GAFAAFVTS-----SGTMDKADSAARQHIATTADLIAA 324

Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           + LP   F     T++   +     RK  E  G 
Sbjct: 325 IRLPEGSFRADAGTDVVVDILFFRKRKVAEPEGD 358


>gi|13541512|ref|NP_111200.1| Type II restriction enzyme, methylase subunit [Thermoplasma
           volcanium GSS1]
          Length = 1007

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 64/248 (25%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
           K+ G  F N S +      + +    +   +      A+  F+D++F      ++++  L
Sbjct: 234 KIEGIPFLNGSLFDREDYLTRDKEEEISEILNEAFLRARKFFDDYNF-----TVDESAPL 288

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
                           +   ++  ++E+L+     +       F TP+D +       L 
Sbjct: 289 EVEVS-----------IDPALIGTVFENLL---LEKERGEKGTFYTPKDEISFICRRALV 334

Query: 194 PDDALFKESPGMIRTLYD--------------------------------PTCGTGGFLT 221
               L        R+L D                                P  G+GGFL 
Sbjct: 335 RYLGLQDRYTPDSRSLQDGIDLYLDELRKSKKLDEIRNLKERLLKVRVVDPAVGSGGFLV 394

Query: 222 DAMNHVADCGSHH-------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             M  +    +               K       +G ++EPE   +    M +  +    
Sbjct: 395 VMMQEIVSIVTEADSIAGWISDPYEYKKTIYGNIYGFDIEPEAVEIARLRMWLSMIIDLE 454

Query: 269 RRDLSKNI 276
                 N+
Sbjct: 455 VPVPLPNL 462


>gi|291530019|emb|CBK95604.1| DNA methylase [Eubacterium siraeum 70/3]
          Length = 2877

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 96/317 (30%), Gaps = 64/317 (20%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD--RVMSNIYE 160
              F  N +AI   ++ +F +  A  E+  +L +        E   +           +Y 
Sbjct: 1300 ERFRRNMEAIRVLKECEFDNRFATPEEQEILSQYVGWGGIPEAFDENNSSWADEFIELYT 1359

Query: 161  HLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L    + S  +     F TP  V+               ++       + +P+CG G F
Sbjct: 1360 ALSPDEYESARASTLTAFYTPPVVISSIYK--------AMEQMGFKEGNILEPSCGIGNF 1411

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
            +    + + D             +G E++  +  +     L ++     +     NI   
Sbjct: 1412 IGMLPSSMQDSK----------IYGVEIDKISAGIAQQ--LYQKTSIAAQPFEEANI--- 1456

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                        F   + N PFG     D+   +      +                 F 
Sbjct: 1457 --------PDSFFDAVIGNVPFGDIRVNDRRYNKHNFLIHDY----------------FF 1492

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
                +KL      GG  A++ S   +           +RR++ +   +   + LP + F 
Sbjct: 1493 AKSLDKLRP----GGVMALITSKGTMDKENPA-----VRRYIAQRADLLGAIRLPNNTFK 1543

Query: 399  --FRTNIATYLWILSNR 413
                T + + + IL  R
Sbjct: 1544 GNAGTEVVSDILILQKR 1560


>gi|225026192|ref|ZP_03715384.1| hypothetical protein EUBHAL_00433 [Eubacterium hallii DSM 3353]
 gi|224956443|gb|EEG37652.1| hypothetical protein EUBHAL_00433 [Eubacterium hallii DSM 3353]
          Length = 2231

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 57/426 (13%), Positives = 123/426 (28%), Gaps = 107/426 (25%)

Query: 1    MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYL 60
            M E +    +++N +W        D+   +           + L   +E +     E+  
Sbjct: 893  MEEESSYFTAISNRVWT-------DYDKKE-----------KELSGEIEAS-----EEKE 929

Query: 61   AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDF 120
            +    N   E        +F+ T +     LG    +    + I +       + +  + 
Sbjct: 930  SLEEINGIAEPIQAT---NFHITDD----ELGQGTPKEKFRANIMAI-----QLLKKCED 977

Query: 121  SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI---RRFGSEVSEGAEDF 177
             +  A  E+  +L +        +   +T        +    +     + +  +      
Sbjct: 978  ENRNATPEEQEILSRYVGWGGLADAFDETKSAWETEYLELKTVLTPEEYAAARASTLNAH 1037

Query: 178  MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
             T   V+     +L          + G    + +P+ G G F      ++          
Sbjct: 1038 YTQPIVIESMYQVL-----ENLGFTKG---NILEPSMGVGNFFGMLPENL---------- 1079

Query: 238  PILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                 +G EL+  +  +       A +LI+                     K  +    F
Sbjct: 1080 NQSKLYGVELDSISGRIAKLLYPDASILIKG------------------FEKTDYPNDFF 1121

Query: 293  HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
               + N PFG     D+          +                 FL    ++L      
Sbjct: 1122 DVAIGNVPFGAYKVNDRQYDRYNFMIHDY----------------FLAKTIDQLRP---- 1161

Query: 353  GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWI 409
            GG AA++ +   +          E+R++L E   +   + LP   F     T ++T +  
Sbjct: 1162 GGVAALITTKGTM-----DKASPEVRKYLAERADLLGAIRLPNTAFKANAGTEVSTDILF 1216

Query: 410  LSNRKT 415
               R++
Sbjct: 1217 FQKRES 1222


>gi|256840308|ref|ZP_05545816.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737580|gb|EEU50906.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1035

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 80/241 (33%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDTVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F    F   
Sbjct: 148 ----------------YAIEK-DLISGMILSLLHENTLTRTAAFETIGEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K       G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R 413
            
Sbjct: 294 H 294


>gi|162448589|ref|YP_001610956.1| DNA modification methyltransferase [Sorangium cellulosum 'So ce
           56']
 gi|161159171|emb|CAN90476.1| probable DNA modification methyltransferase [Sorangium cellulosum
           'So ce 56']
          Length = 576

 Score = 46.1 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/197 (18%), Positives = 57/197 (28%), Gaps = 21/197 (10%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              E     +T   VV+L   L     D           +L +P CG G FL  A   + 
Sbjct: 27  SSGEAHGVVLTKPHVVNLILDLAGYTADRDL-----ASLSLLEPACGHGAFLVPAAERLI 81

Query: 229 DCGSHHKIP--------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                H                    ++    AV  A   +    +D  R     I  G 
Sbjct: 82  QSARRHDRDLLDIEPAIRSYDVERDHVDRARLAVAGALARLGLPHADATRLSEAWIAHGD 141

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            L      G+RF   + NPP+ +      + +  E +     R+   L   +D  + F+ 
Sbjct: 142 FLLTSQ--GRRFDAVVGNPPYVR-----IEQLSPELQEEYRHRYR-SLYDRADLYVAFIE 193

Query: 341 HLANKLELPPNGGGRAA 357
                L          A
Sbjct: 194 RGLELLAPGGVLSFICA 210


>gi|330959662|gb|EGH59922.1| hypothetical protein PMA4326_14004 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 159

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                  F TP  +  L + L++D +    +       TL +P  G+G  +    N + +
Sbjct: 3   SKADMGQFFTPPSISTLLSTLVMDIEHIQSQVKRRGFVTLSEPASGSGAMVIAFANSMLE 62

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            G +++    +     ++     A     +L           +   +  G+TL+
Sbjct: 63  LGINYQQHLHVTLVDLDIRAVHMAFIQLSLL----------HIPAVVVHGNTLT 106


>gi|317490714|ref|ZP_07949177.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
 gi|316910184|gb|EFV31830.1| hypothetical protein HMPREF1023_02877 [Eggerthella sp. 1_3_56FAA]
          Length = 2244

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 76/295 (25%), Gaps = 64/295 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R +          + TP +V                  +      + DP  GTG F    
Sbjct: 499 REYAKARESTLTAYYTPIEVARAVW--------DYLAMAGFSAGNVLDPAAGTGRFADAM 550

Query: 224 MNHVADCGSHHKIPPILV--PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
              +A   S   + P  V     Q   P     C                      + +T
Sbjct: 551 PEGMAGLASITMVEPDPVSALIAQHAHPGMAVQCKG-------------------YEATT 591

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L+ D      F   ++N PFG+ +         E        F   L             
Sbjct: 592 LADD-----SFDVAVTNVPFGQ-FSVYDRRHAGEGMLVHDYFFAKAL------------- 632

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--- 398
                      GG  A + +S  L         S  RR L     +     LP   F   
Sbjct: 633 ------DHVRPGGLVAFITASGTL-----DKKSSSARRELAARAELVCAARLPDSTFRAS 681

Query: 399 FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
             T + + + +L  R+      +        + T   ++G +      + R  +L
Sbjct: 682 AGTTVTSDVVVLRKRRERISNEEA--AGLPWVGTVEHSDGVRVNRWIAEHREAVL 734


>gi|120600856|ref|YP_965430.1| Eco57I restriction endonuclease [Shewanella sp. W3-18-1]
 gi|120560949|gb|ABM26876.1| Eco57I restriction endonuclease [Shewanella sp. W3-18-1]
          Length = 609

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 74/265 (27%), Gaps = 47/265 (17%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A    K+   F  I+         ++ +IY  ++    +        + TP  +V     
Sbjct: 89  AKNTGKVIAQFPDIDAG------YLIGSIYTAML---PTAYRSDLGAYYTPPPLVSRLLD 139

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L  +              ++ DP CG G FL      +     H      L   G+ L+ 
Sbjct: 140 LAEEAGVDFS------TASVIDPACGGGAFLAPVAMRMLQRSKHASSEWKLAQIGKRLKG 193

Query: 250 ETHAVCVAGM--------LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
                  A M        LI       RR     I     L+    +   F   + NPP+
Sbjct: 194 VEIDPFAAWMTHVLLECVLIEHCIIARRRLAKSVISICDALT--YQSPVDFDLVIGNPPY 251

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIV 359
           G                 +  R   G       ++  LF        +      G  A +
Sbjct: 252 G-------KVSLDTEVREKFSRSLFGH-----ANLYGLFTDLALRLAKPE----GVIAYL 295

Query: 360 LSSSPLFNGRAGSGESEIRRWLLEN 384
             +S L     G     +R  L++ 
Sbjct: 296 TPTSFL----GGQYFKALRELLIDE 316


>gi|14324897|dbj|BAB59823.1| modification methylase [Thermoplasma volcanium GSS1]
          Length = 985

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 64/248 (25%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLL 133
           K+ G  F N S +      + +    +   +      A+  F+D++F      ++++  L
Sbjct: 212 KIEGIPFLNGSLFDREDYLTRDKEEEISEILNEAFLRARKFFDDYNF-----TVDESAPL 266

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
                           +   ++  ++E+L+     +       F TP+D +       L 
Sbjct: 267 EVEVS-----------IDPALIGTVFENLL---LEKERGEKGTFYTPKDEISFICRRALV 312

Query: 194 PDDALFKESPGMIRTLYD--------------------------------PTCGTGGFLT 221
               L        R+L D                                P  G+GGFL 
Sbjct: 313 RYLGLQDRYTPDSRSLQDGIDLYLDELRKSKKLDEIRNLKERLLKVRVVDPAVGSGGFLV 372

Query: 222 DAMNHVADCGSHH-------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
             M  +    +               K       +G ++EPE   +    M +  +    
Sbjct: 373 VMMQEIVSIVTEADSIAGWISDPYEYKKTIYGNIYGFDIEPEAVEIARLRMWLSMIIDLE 432

Query: 269 RRDLSKNI 276
                 N+
Sbjct: 433 VPVPLPNL 440


>gi|222080160|ref|YP_002540023.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738805|gb|ACM39584.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 470

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 68/274 (24%), Gaps = 60/274 (21%)

Query: 153 RVMSNIYEHLI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             +    E  +    + S          TP  ++    +          +        + 
Sbjct: 142 DDLGTSLETAVAESDYASLARCTQYAHFTPEFIIRAIWS--------GLQRLGWRGGRIL 193

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P  GTG F         D              G EL+P T  +                
Sbjct: 194 EPGIGTGLFPALMPEAYRD---------NSFVTGIELDPVTARIAR------------LL 232

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I        DL     +   + NPPF  +  +   +  K                
Sbjct: 233 QPRARIINADFARTDLAP--IYDLAIGNPPFSDRSVRSDRSYRKLGLRLHDY-------- 282

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+    + L      G  AA V SS  +    A       R  +  +  + A 
Sbjct: 283 -------FIARSIDLLRP----GALAAFVTSSGTMDKADAT-----AREHIARSADLSAA 326

Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           + LP   F     T++   +     RK  +  G 
Sbjct: 327 IRLPEGSFRRDAGTDVVVDILFFRKRKVGQAEGD 360


>gi|332523009|ref|ZP_08399261.1| type III restriction enzyme, res subunit [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314273|gb|EGJ27258.1| type III restriction enzyme, res subunit [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 1982

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 69/276 (25%), Gaps = 59/276 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 668 KEYSDMKQSSLTAYYTDPTLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 719

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ +             +G EL+  T A+                  + +I+      
Sbjct: 720 PKHLRENSE---------LYGVELDTITGAIAK------------HLHPNSHIEV-KGFE 757

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   LSN PF              +      R+        D   +   +  
Sbjct: 758 TVAFNDNSFDLVLSNVPFA-------------NIRIADSRY--------DKPYMIHDYFV 796

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+        G        I + + E       V LP   F     
Sbjct: 797 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDSAFKAIAG 851

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           TN+ T +        +         + +  +     
Sbjct: 852 TNVTTDMLFFQKHMDKGYVADDLAFSGSIRYDKDDR 887


>gi|317132847|ref|YP_004092161.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
 gi|315470826|gb|ADU27430.1| DEAD-like helicase [Ethanoligenens harbinense YUAN-3]
          Length = 2462

 Score = 46.1 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 71/511 (13%), Positives = 142/511 (27%), Gaps = 86/511 (16%)

Query: 90   TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
             +   +           F+  A    +  +     A  E+  +L +    + GI    D 
Sbjct: 807  RITDDHLGEGGAKTKYGFNIAAICTLKQIEAEGRTATPEEQEILSRYVG-WGGIPQAFDP 865

Query: 150  VPDRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
              +   S  Y  LI       +    +       T   V+      +             
Sbjct: 866  -NNASWSKEYAELIGALTAEEYEMARASTLNAHYTSPTVIRAIYEAVG--------NMGF 916

Query: 205  MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
                + +P CG G F       +A              +G EL+  T  +          
Sbjct: 917  QTGNILEPACGVGNFFGLLPESMAA----------SRLYGVELDSITGRIAK-------- 958

Query: 265  ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   L  N +      +       F   + N PFG     D+      +K G     
Sbjct: 959  ------QLYPNAKIIVAGFETTDRKDFFDLAVGNVPFGSYKVSDRAY----NKLGF---- 1004

Query: 325  GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  I D       +   K       GG  A V   +  +     S E  +RR++ + 
Sbjct: 1005 -----PIHD-------YFFAKTLDQVRPGGVIAFV---TSRYTMDKQSPE--VRRYIAQR 1047

Query: 385  DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
              +   + LP+D F     T + T +  L  R           I    +      +G   
Sbjct: 1048 ADLLGAIRLPSDAFKANAGTEVTTDILFLQKRDRPID------IEPDWVHLGQTEDGIPV 1101

Query: 442  RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDK--TGLARLE 499
                 D    +L               D +  G ++     P   + + ++    ++ L+
Sbjct: 1102 NSYFADHPEMVLGT----------IQWDDKMHGDKKETACEPFPDANLSEQLHEAVSHLQ 1151

Query: 500  ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
              +   +L  L ++  +D   P    +  Y +     K   + N  + ++ + +++    
Sbjct: 1152 GQMAEAELPDLGENEEIDDSIPADPNVKNYSYTVVDGKVYYRENS-RMVRPELNETAKAR 1210

Query: 560  FINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
             +     +D     ++    E+  D  +   
Sbjct: 1211 VMGMVELRDCVQKLISQQLDEYASDAEIRNT 1241


>gi|310766458|gb|ADP11408.1| conserved uncharacterized protein [Erwinia sp. Ejp617]
          Length = 241

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +  P   +  ++  L         +    F TP  +  +   L L   +  F++ P +  
Sbjct: 90  EEAPGDFLGRVFMQL-----ELGDKYRGQFFTPWSMGLMMAQLQLGNTEEQFRDKPFI-- 142

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TL +P CG G       + + + G        +     +++P    +    + +  +  +
Sbjct: 143 TLSEPACGAGCMALAFASVLREAGF--PPHRRMWVSATDIDPLAAGMAYIQLSLCGVAGE 200

Query: 268 PRRDLSKNIQQGSTLSKDLF 287
                + + ++   L   + 
Sbjct: 201 VVIGNALSDERRRVLYTPMH 220


>gi|310765365|gb|ADP10315.1| conserved uncharacterized protein [Erwinia sp. Ejp617]
          Length = 228

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 9/140 (6%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           +  P   +  ++  L         +    F TP  +  +   L L   +  F++ P +  
Sbjct: 80  EEAPGDFLGRVFMQL-----ELGDKYRGQFFTPWSMGLMMAQLQLGNTEEQFRDKPFI-- 132

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           TL +P CG G       + + + G        +     +++P    +    + +  +  +
Sbjct: 133 TLSEPACGAGCMALAFASVLREAGF--PPHRRMWVSATDIDPLAAGMAYIQLSLCGVAGE 190

Query: 268 PRRDLSKNIQQGSTLSKDLF 287
                + + ++   L   + 
Sbjct: 191 VVIGNALSDERRRVLYTPMH 210


>gi|296127563|ref|YP_003634815.1| type IIS restriction endonuclease [Brachyspira murdochii DSM 12563]
 gi|296019379|gb|ADG72616.1| type IIS restriction endonuclease, putative [Brachyspira murdochii
           DSM 12563]
          Length = 1076

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 80/299 (26%), Gaps = 71/299 (23%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
                LE     V    +     + +   +       F N   +S         ++  + 
Sbjct: 261 YYSDVLEDLFFNVLNMDMEKRKFSKERVIYNYEKAIPFLNGGLFS-KKEDDEAVKSIDDE 319

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            I          FE ++F+                   +  ++    +   ++  I+E+L
Sbjct: 320 IIKG----LFEFFEMYNFT---------------VDESAPFDVEIS-IDPEMLGRIFENL 359

Query: 163 IRRFG----SEVSEGAEDFMTPRDVVHLAT-------------ALLLDPDDALFKESPGM 205
           +            +    F TPR++V                  +  +  D +F     +
Sbjct: 360 LAEINPETKESARKETGSFYTPREIVDYMVMEAIKLYLYKKMPDMEKNKIDRIFDVDESV 419

Query: 206 IRT---------------LYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILV----- 241
             T               + DP CG+G    G L    N +     +H+     V     
Sbjct: 420 KYTDEERKGILKNIHDMIILDPACGSGAFPLGILQRVFNVIDKLDPNHEYYKNYVIDKLP 479

Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                     +  +     + + +   +I  ++  P       ++   +L  D    K+
Sbjct: 480 SGAKAEFKKLYDAKKFSYAYKLDILQSMIHGVDIQPIAIEVSKLRAFLSLVVDEKKEKK 538


>gi|189467033|ref|ZP_03015818.1| hypothetical protein BACINT_03415 [Bacteroides intestinalis DSM
           17393]
 gi|189435297|gb|EDV04282.1| hypothetical protein BACINT_03415 [Bacteroides intestinalis DSM
           17393]
          Length = 1053

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 52/152 (34%), Gaps = 23/152 (15%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
            F    SN PFG     D    + E+               S  +  FL     K     
Sbjct: 189 TFDVVASNIPFG-----DMAVFDPEYTGVPDN--ARRTAAKSIHNYFFL-----KGLDAA 236

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   L + +       +RR +++N  I ++V LP +LF     T + + L
Sbjct: 237 REGGIVAFITSEGVLNSPKNEL----VRRHIVKNANIVSVVRLPNNLFTDHAGTEVGSDL 292

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGK 439
            IL    T+ R     L      +    + G 
Sbjct: 293 VILQKDTTKNRE----LSEQEKWFIRATDIGD 320


>gi|88810586|ref|ZP_01125843.1| hypothetical protein NB231_15938 [Nitrococcus mobilis Nb-231]
 gi|88792216|gb|EAR23326.1| hypothetical protein NB231_15938 [Nitrococcus mobilis Nb-231]
          Length = 1207

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 97/324 (29%), Gaps = 74/324 (22%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +     +  R + ++Y+ L         +      TP  V        L+P    F   
Sbjct: 172 HDFTDPGLDTRFLGDLYQDL----SEAARKRYALLQTPEFVEAFILERTLEPAIDAFGLE 227

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADC------GSHHKIPPILVP---HGQELEPETHA 253
                 L DP CG+G FL  A   +         G   +   I      HG ++ P   A
Sbjct: 228 ---DIRLLDPACGSGHFLLGAFQCLLGHWQKAAPGLDARERVIHALAGVHGVDVNPFAVA 284

Query: 254 VCVAGMLIRRLESDPRRDLSK------NIQQGSTLSK----------------------- 284
           +    +L+  L++   + L +      N+  G +L                         
Sbjct: 285 IARFRLLVAALQATGIKMLKEAPGWCFNLTAGDSLLHGRRFGQLDLVGGKGLDQRYAHAY 344

Query: 285 --------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
                   +   G+++H  + NPP+    +K  + + +        +F  G+P       
Sbjct: 345 AAEDIDEINRILGQQYHAVVGNPPYITASDKALNTLYRARYGSCHRQFSLGVP------- 397

Query: 337 LFLMHLANKLELPPNG-GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL----IEAIV 391
            F            NG  G   ++ ++S +          E  + L+E+ L    +  ++
Sbjct: 398 -FTERFFQLAVEDANGPAGFVGLITTNSFMKR--------EFGKKLIEDYLPRQDLTHVI 448

Query: 392 ALPTDLFFRTNIATYLWILSNRKT 415
                        T +    NR  
Sbjct: 449 DTSGAYIPGHGTPTVILFGRNRAP 472


>gi|166365940|ref|YP_001658213.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
 gi|166088313|dbj|BAG03021.1| adenine specific DNA methyltransferase [Microcystis aeruginosa
           NIES-843]
          Length = 1065

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 82/280 (29%), Gaps = 59/280 (21%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------- 208
           YE  +  + S++ E    + TP  VV      +       F+   G+             
Sbjct: 301 YETFLAEYDSKMRESRGVYYTPEPVVSYMVRSVDYILKNKFQIPKGLADAKKITIKNPNN 360

Query: 209 -----------LYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELEP 249
                      + DP  GTG FL   ++H+ D     K           +    G EL  
Sbjct: 361 SQETQEVHQVLILDPAVGTGTFLHSVIDHIYDSFRQQKGMWSSYVSKHLLPRLFGFELLM 420

Query: 250 ETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTL----------------------SKD 285
             + V      + ++ L  D   D    I   +TL                      +KD
Sbjct: 421 APYTVAHMKLGLQLQELGYDFSADERLGIYLTNTLQEAFQIPPADGFLNRIRDEAAAAKD 480

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA-- 343
           +         L NPP+  +       +    K+       P   +   G +   +     
Sbjct: 481 VKQEMPVMVILGNPPYSYQSMNTDPWIVNLVKDYYQLDGKPLGERNPKGLLDDYVKFIRF 540

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
            +  +   G G  A++ +   L N         +R+ L++
Sbjct: 541 AQYRVAETGYGVVALITNHGYLDNPTFRG----MRQNLMQ 576


>gi|317489197|ref|ZP_07947715.1| methyltransferase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911705|gb|EFV33296.1| methyltransferase domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 2013

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 63/255 (24%), Gaps = 57/255 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +     F TP+++                +        + +P+CGTG F    
Sbjct: 510 GEYAAARASTLTAFYTPQEIARPIWE--------AIRGMGLSGGRVLEPSCGTGAFFAAM 561

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +                G EL+  T  +  A               S  I  G    
Sbjct: 562 PEAL----------AGCRLVGVELDGLTARIARA------------LHPSAEIIHG-GFE 598

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   + N PFG  ++ D      E        F   L               
Sbjct: 599 HADLDDESFDVAVGNVPFG-SYQVDDPRHRDEGLLVHDWFFARAL--------------- 642

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
                    GG  A V S   L      +          E   +   V LP   F     
Sbjct: 643 ----DLVRPGGIVAFVTSKGTLDKKNPAARRRIA-----ERAELVGAVRLPNTAFSPHAE 693

Query: 404 ATY-LWILSNRKTEE 417
            T  + IL  R+  E
Sbjct: 694 VTADVVILQKRERAE 708


>gi|295099158|emb|CBK88247.1| DNA methylase [Eubacterium cylindroides T2-87]
          Length = 2848

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 72/257 (28%), Gaps = 57/257 (22%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T   ++                +       + +P+CG G F+    
Sbjct: 1325 EYAAARASSLTAFYTSPVIIGAMYQ--------ALSQMGFRQGNILEPSCGVGNFIGMLP 1376

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            + +AD             +G E++  +  +              +   + +I   +   K
Sbjct: 1377 DSMADSK----------AYGVEIDSISGRIAQ------------QLYQNSSIAV-NGFEK 1413

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                   F   + N PFG  ++      +K H       FG                   
Sbjct: 1414 VQMPDSFFDVAIGNVPFG-DFKVRDKKYDKNHWLIHDYFFG------------------- 1453

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTNI 403
            K       GG  A + S   +         S +R++L +   +   + LP + F      
Sbjct: 1454 KTLDKVRPGGVIAFITSKGTMDKEN-----SAVRKYLAQRADLIGAIRLPNNAFKANAGT 1508

Query: 404  ATYLWILSNRKTEERRG 420
                 I+  +K +    
Sbjct: 1509 EVTSDIIFLQKRDRMTD 1525


>gi|294807413|ref|ZP_06766217.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294445373|gb|EFG14036.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 523

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 77/246 (31%), Gaps = 53/246 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  VV      L  P        PG      DP+ GTG      +  V + 
Sbjct: 20  NSVLTAFYTPEPVVTAMQESLQVP-----GIRPG---RFLDPSAGTG-MFISGLKGVPEV 70

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K                 A+                D  ++IQ         +   
Sbjct: 71  HCFEKDKLTGKILSALYPESRVAI----------------DGFQSIQP--------YYNN 106

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELP 349
            F    SN PFG     D+D    E            + + S  S+  +  +   K    
Sbjct: 107 YFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFLKGMDT 153

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYL 407
            + GG  A + +S  + + +       +R WL+ +  + + + LP +LF    T +++ L
Sbjct: 154 LHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTEVSSDL 209

Query: 408 WILSNR 413
            +L   
Sbjct: 210 IVLQKN 215


>gi|325832284|ref|ZP_08165283.1| methyltransferase domain protein [Eggerthella sp. HGA1]
 gi|325486120|gb|EGC88574.1| methyltransferase domain protein [Eggerthella sp. HGA1]
          Length = 2013

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 63/255 (24%), Gaps = 57/255 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +     F TP+++                +        + +P+CGTG F    
Sbjct: 510 GEYAAARASTLTAFYTPQEIARPIWE--------AIRGMGLSGGRVLEPSCGTGAFFAAM 561

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +                G EL+  T  +  A               S  I  G    
Sbjct: 562 PEAL----------AGCRLVGVELDGLTARIARA------------LHPSAEIIHG-GFE 598

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                 + F   + N PFG  ++ D      E        F   L               
Sbjct: 599 HADLDDESFDVAVGNVPFG-SYQVDDPRHRDEGLLVHDWFFARAL--------------- 642

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
                    GG  A V S   L      +          E   +   V LP   F     
Sbjct: 643 ----DLVRPGGIVAFVTSKGTLDKKNPAARRRIA-----ERAELVGAVRLPNTAFSPHAE 693

Query: 404 ATY-LWILSNRKTEE 417
            T  + IL  R+  E
Sbjct: 694 VTADVVILQKRERAE 708


>gi|329769195|ref|ZP_08260615.1| hypothetical protein HMPREF0433_00379 [Gemella sanguinis M325]
 gi|328839414|gb|EGF88992.1| hypothetical protein HMPREF0433_00379 [Gemella sanguinis M325]
          Length = 300

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 98/313 (31%), Gaps = 53/313 (16%)

Query: 118 FDFSSTIARLEKAGL----LYKICKNFSGIELHP--DTVPDRVMSNIYEHLIRRFGSEVS 171
           F     +  ++  GL    L K     +  +     D      +  +Y+ L+ +   E++
Sbjct: 9   FKIDKEVEEIKGEGLYFEGLIKYLTLENDDDYFDIVDNYDKETIRKVYQFLLLKALKELN 68

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 +TP  +    + L+                ++ D   G+G  L +    V    
Sbjct: 69  -NPSYDITPEVITMYISHLIECIYGD-------KKVSITDLASGSGSLLINIAALVKGDK 120

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
               +         +         +  +L   +E          I     L       K+
Sbjct: 121 ELTSVDVDSNYVRLQQN-------IFNLLETNVE----------IINQDALKP--LNIKK 161

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               +S+ PFG   ++D     K                 S  ++LF+   AN L    +
Sbjct: 162 QDVVISDVPFGYYADEDNSLNYKLCSADGY----------SLNALLFIEQAANYL----D 207

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    L        E   +++L E+  + A++ LP ++F   +    + +++
Sbjct: 208 DNGVGILVIPKKVL------ELEDNFKKYLEEDINLNAVITLPDEMFKNASQQKAIILIT 261

Query: 412 NRKTEERRGKVQL 424
            +       +V L
Sbjct: 262 KKGQNRLPNQVFL 274


>gi|330997120|ref|ZP_08320973.1| putative septum site-determining protein MinC [Paraprevotella
            xylaniphila YIT 11841]
 gi|329570915|gb|EGG52622.1| putative septum site-determining protein MinC [Paraprevotella
            xylaniphila YIT 11841]
          Length = 1357

 Score = 46.1 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 62/524 (11%), Positives = 138/524 (26%), Gaps = 69/524 (13%)

Query: 120  FSSTIARLEKAGLLYKICKNFSGI--ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
                    E+   L K          ++       R++  +Y+   +    +  E     
Sbjct: 824  LDDEAKTEEENERLQKFYDYVRTTVGDITDAEGRQRLIVELYDKFFKVASPKTVEKLGIV 883

Query: 178  MTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
             TP +VV      +       F  S       + DP  GTG F+T  +            
Sbjct: 884  YTPVEVVDFIIRSVGYIIQKEFGRSLSDENVHILDPFTGTGTFITRLLQSELINREALAR 943

Query: 237  PPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTL------SKDLFT 288
                  H  E+    + +    +  +   L  +        I    T       S +   
Sbjct: 944  KYCKEIHANEIVLMAYYIASINIESVFHSLVPEEEYRTFDGICLTDTFQLGEKDSDENLY 1003

Query: 289  GKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP---- 329
             ++F                  + NPP+       + +     +N    R    +     
Sbjct: 1004 SEQFPTNSKRVMAQKKCPITVVVGNPPYSI----GQKSANDNAQNQSYPRLEKHIETTYV 1059

Query: 330  -------KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                     S               L    GG    V + + L           +R+   
Sbjct: 1060 AQSEANLNKSAYDSYVKAFRWASDRLNEKEGGVIGFVTNGAWLDANGLDG----MRKCFE 1115

Query: 383  ENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQ-LIN 426
            +      +  L  +              +F   +     + IL  ++      K Q   +
Sbjct: 1116 QEFSSIYVFNLRGNQRTSGELSRKEGGKIFGSGSRTPIAITILVKKRKANNLEKAQIFYH 1175

Query: 427  ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRM 486
                + S  ++ K  R + D        ++   E  K    +  R   ++    + P + 
Sbjct: 1176 DIGDYLSREDKLKIIRQMGD--ISNPTMMWKLVEPNKHGDWISPRNEMFKLFIPIEPEKK 1233

Query: 487  SFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAK 546
                 K+        +   + + ++ S    + + M   I  Y        ++IK ++  
Sbjct: 1234 FAKGQKSFFDTYAIGVATNRDAWVYNSSRQRLEQNMRSMIDFYNRQREAYNDAIKVDKKL 1293

Query: 547  TLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLTEY 590
             ++   +            +KD       ++   ++  ++L + 
Sbjct: 1294 FVESFINTDDSKISWTVNLKKD----IERNIEHNYV--SDLRDS 1331


>gi|254884184|ref|ZP_05256894.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|255013702|ref|ZP_05285828.1| putative DNA methylase [Bacteroides sp. 2_1_7]
 gi|254836977|gb|EET17286.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1659

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 47/255 (18%), Positives = 83/255 (32%), Gaps = 49/255 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F E+   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSENGLKMRSFLEPSAGIGGFLPIAMSGTYDYAIEKD 153

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           +                 +    + +    +  R    + I       +  F    F   
Sbjct: 154 L-----------------ISGMILSLLHENTLTRTTGFEEI------GEQGFEHTTFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K       G +      I +    F+  +        N GG 
Sbjct: 191 ASNIPFGNFRVFDAELWKK------GGMYEQATKTIHN--YFFVKAM-----ELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A + S           G   +R +L+ +  + + + LP  LF +T+   + + L I   
Sbjct: 238 LAFITSRGIADT----PGNKFVREYLVNHADLISAIRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 --RKTEERRGKVQLI 425
             RK    + +   +
Sbjct: 294 HTRKAALSQREQLFL 308


>gi|21226258|ref|NP_632180.1| type IIS restriction enzyme [Methanosarcina mazei Go1]
 gi|20904497|gb|AAM29852.1| type IIS restriction enzyme [Methanosarcina mazei Go1]
          Length = 1165

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 69/277 (24%), Gaps = 58/277 (20%)

Query: 56  REKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDN 110
            + + +   +  + +         F N +   +  L + N    L  Y+        +  
Sbjct: 103 IKVFTSTDPNKPEPDILTNALKLDFLNLNRDLVLDLKAENKDEELYKYLILKLCNYLNKI 162

Query: 111 AKAIFEDFDFSSTIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYEHLIR---- 164
              +FE          L    LL    +    + I    D     ++  IY+  I     
Sbjct: 163 MPFLFEKI--EDYTELLFPDKLLHTGSVLHGLNSIIPDEDWKEVEIIGWIYQDYIAPKKD 220

Query: 165 ----------RFGSEVSEGAEDFMTPRDVVHLATA-----LLLDP--------------- 194
                     +   E         TP  +V          L +                 
Sbjct: 221 KVFADLKKNIKISKENIPAVTQLFTPHWIVRYLVENSLGRLWMLNRPESSLVDRMEYYIK 280

Query: 195 ----DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------LVP 242
               +    K +      + DP CG+G  L  A + +          P            
Sbjct: 281 PEKQETDFLKINSPEEIKICDPACGSGHMLVYAFDLLYAIYEEEGYTPSEIPEMILTHNL 340

Query: 243 HGQELEPETHAVCVAGMLIRRLESD---PRRDLSKNI 276
            G E++     +    + ++    D     + +  NI
Sbjct: 341 FGIEIDKRAGELAGFALAMKARGKDRRFFNKQVHPNI 377


>gi|282897536|ref|ZP_06305537.1| hypothetical protein CRD_00702 [Raphidiopsis brookii D9]
 gi|281197631|gb|EFA72526.1| hypothetical protein CRD_00702 [Raphidiopsis brookii D9]
          Length = 701

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 42/171 (24%)

Query: 154 VMSNIYEHLIR--------RFGSEVS---------EGAEDFMTPRDVVHLATALLLDP-D 195
            + ++YE L+         ++ S            +    + TP  +V       L+P  
Sbjct: 354 ELGSVYESLLDFHPQITLDKYNSSFKLVVDISSERKTTGSYYTPPSLVQELIKTALEPVI 413

Query: 196 DALFKESPGMIR-------TLYDPTCGTGGFLTDAMNHV----------------ADCGS 232
                +     +        + D  CG+G FL  A   +                +    
Sbjct: 414 KEKMAQENEKTQERAILSIKVVDAACGSGHFLLAAARRLGKELAKIRTGDIQPGASSLRE 473

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282
             +       +G ++ P    +C  G+ I       P   L   I+ G++L
Sbjct: 474 AIREVIQNCIYGVDINPLAVDLCKVGLWIEGFCSGKPLNFLDHRIKCGNSL 524


>gi|212695220|ref|ZP_03303348.1| hypothetical protein BACDOR_04758 [Bacteroides dorei DSM 17855]
 gi|212662130|gb|EEB22704.1| hypothetical protein BACDOR_04758 [Bacteroides dorei DSM 17855]
          Length = 252

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        + A         + + DP
Sbjct: 85  DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + V  ML+     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVSRTCCLMTVCNMLVHGCIGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF 292
              +    +L  + F     
Sbjct: 180 ---VIHHDSLCPENFMDGWM 196


>gi|150003238|ref|YP_001297982.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
 gi|149931662|gb|ABR38360.1| type I restriction enzyme, M subunit [Bacteroides vulgatus ATCC
           8482]
          Length = 252

 Score = 46.1 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 28/140 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        + A         + + DP
Sbjct: 85  DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + V  ML+     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVSRTCCLMTVCNMLVHGCIGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF 292
              +    +L  + F     
Sbjct: 180 ---VIHHDSLCPENFMDGWM 196


>gi|291086945|ref|ZP_06571733.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291076446|gb|EFE13810.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 2527

 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 50/403 (12%), Positives = 108/403 (26%), Gaps = 84/403 (20%)

Query: 40   LLRRLECALEPTRSAVREKYLAFGGSNID---------LESFVKVAGYSF-YNTSEYSLS 89
            + +R     +  ++   E       +  +         +        Y+F YN   + + 
Sbjct: 822  VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAAQKKYNFHYNL--WEME 879

Query: 90   TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHP 147
              G+          I +         +  +  + +A  E+  +L K       S      
Sbjct: 880  KGGAKTRYQWNMDAIRT--------LKQIESENRLATPEEQKVLSKFVGWGGLSQAFDEE 931

Query: 148  DTVPDRVMSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            +   ++  + + E L    + +  +     F T  ++     + L+        +     
Sbjct: 932  NAGWNKQYAELKELLSDEEYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRG 983

Query: 207  RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
              + +P+ G G F                       +G EL+  +  +            
Sbjct: 984  GNVLEPSMGIGNFFGSM----------PAPMQRSKLYGVELDSISGRIAK---------- 1023

Query: 267  DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
              +   + NI   +      +    F   + N PFG     D    +   +  +      
Sbjct: 1024 --QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY----- 1075

Query: 327  GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
                              K       GG  A++ +   L           IR+++ E   
Sbjct: 1076 ---------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYMAERAE 1115

Query: 387  IEAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424
            +   + LP   F     T +   +  L    RK +     V L
Sbjct: 1116 LVGAIRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1158


>gi|78776679|ref|YP_392994.1| hypothetical protein Suden_0478 [Sulfurimonas denitrificans DSM
           1251]
 gi|78497219|gb|ABB43759.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 908

 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 63/209 (30%), Gaps = 37/209 (17%)

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--------NHVADCGSH 233
           ++      +  +P       +        DP CG+G FL  A           +      
Sbjct: 325 ELSEEFAKIKNNPKQLQIFHAKISNLKFLDPACGSGNFLVIAYRELKLVEFEVLKSLKIL 384

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR-------------DLSKNIQQGS 280
            ++  I   +G E+E     +    ML+   + +                  S NI   +
Sbjct: 385 TQLVHIDQFYGFEIEELPSRITQTAMLLIDHQMNLLFAQMFGEPHFNIPIKDSANIFNVN 444

Query: 281 TLSKDL---FTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            L  D      G +  + + NPPF   K   K++     E  +G            +   
Sbjct: 445 ALRVDWEKILDGVKIDFIIGNPPFLGSKMQSKEQKEDMAEVFSGV----------KNGKE 494

Query: 336 MLFL-MHLANKLELPPNGGGRAAIVLSSS 363
           + F+        +       + A+V ++S
Sbjct: 495 LDFVTAWYIKSAKYLQGKNTKVALVSTNS 523


>gi|86359839|ref|YP_471730.1| DNA methylase [Rhizobium etli CFN 42]
 gi|86283941|gb|ABC93003.1| probable DNA methylase [Rhizobium etli CFN 42]
          Length = 1699

 Score = 46.1 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 74/283 (26%), Gaps = 60/283 (21%)

Query: 153 RVMSNIYEHLI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLY 210
             + N  E  +    + S          TP  V+               +        + 
Sbjct: 141 DDLGNSLETAVSEGEYASLARCTQYAHFTPEFVIRAIWM--------GIQRLGWRGGRVL 192

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           +P  GTG F                        G EL+P T  +              + 
Sbjct: 193 EPGIGTGLFPALMPKQYRQLS---------YVTGIELDPVTARIVK------------QL 231

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
                I  G     DL     +   + NPPF  +  +                       
Sbjct: 232 QPKARIINGDFARTDL--NAIYDLAIGNPPFSDRTVRSDRQYRSLGLRLHDY-------- 281

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI 390
                  F+    + L+      G  A  ++S+    G     +   R  + ++  + A 
Sbjct: 282 -------FIARSIDLLKP-----GALASFVTSA----GTMDKVDGTAREHIAQSADLIAA 325

Query: 391 VALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
           + LP   F     T++   +     RK  E  G V  ++  ++
Sbjct: 326 IRLPEGSFRRDAGTDVVVDVLFFRKRKAGEPEGDVSWLDLEEV 368


>gi|282601441|ref|ZP_05981716.2| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
           15176]
 gi|282569100|gb|EFB74635.1| superfamily II DNA and RNA helicase [Subdoligranulum variabile DSM
           15176]
          Length = 2002

 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 63/252 (25%), Gaps = 57/252 (22%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            + TP +V+H              +        + +P+ G G F                
Sbjct: 492 AYFTPPEVIHAMYR--------ALERMGVRGGNILEPSMGIGAFF--------AHKPSSF 535

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G E++  T  +               +     I       K       F   
Sbjct: 536 DLNSAKLYGVEIDELTGRIAR----------QLYQKARIQITG---FEKADLPDSFFDCA 582

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + N PFG  +     A +K H                        +   K       GG 
Sbjct: 583 VGNVPFG-DFSVSDRAYDKLHFRIHD-------------------YFLAKTIDKVRTGGI 622

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
            A++ +S  L           +R+++     +   V LP   F     T     +  L  
Sbjct: 623 IAMITTSGTL-----DKKSDTVRKYIAARCDLIGAVRLPNTTFKQNAGTEAVADILFLQK 677

Query: 413 RKTEERRGKVQL 424
           R     R +  L
Sbjct: 678 RDRLVERDEAWL 689


>gi|241888649|ref|ZP_04775956.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
 gi|241864672|gb|EER69047.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
          Length = 300

 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 105/311 (33%), Gaps = 59/311 (18%)

Query: 116 EDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           E   F S +    LE     + I  NFS  +          +   Y+ L+ +   E++  
Sbjct: 21  EGLYFDSLVNYLTLENDEDYFDIIDNFSKED----------IKKAYQFLLLKALKELN-N 69

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
               +TP +V+ +  + +L+      K       ++ D   G+G FL +           
Sbjct: 70  PSYDITP-EVITMYVSHILEYLYNNEKI------SVADFASGSGNFLINLSALSKGEYEL 122

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
             +         +         +  +L   +E          I     L       K+  
Sbjct: 123 TSVDVDNNYARLQQN-------IFNLLETNVE----------IINQDALKP--LNIKKQD 163

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +S+ PFG   ++D     K                 S  ++LF+   AN L    N  
Sbjct: 164 VIISDVPFGYYADEDNSLNYKLCSAEGY----------SLNALLFIEQAANYL----NDN 209

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           G   +V+    L        E   +++L E+  + A++ LP ++F   +    + +++ +
Sbjct: 210 GVGVLVVPKKVL------ELEDNFKKFLEEDINLNAVITLPDEMFKNASQQKAIILITKK 263

Query: 414 KTEERRGKVQL 424
           +  +   +V L
Sbjct: 264 EQTKLPNQVFL 274


>gi|260771707|ref|ZP_05880626.1| hypothetical protein VIB_000146 [Vibrio metschnikovii CIP 69.14]
 gi|260613291|gb|EEX38491.1| hypothetical protein VIB_000146 [Vibrio metschnikovii CIP 69.14]
          Length = 46

 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 2/42 (4%)

Query: 4  FTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRR 43
                 L   +W +   L         ++   +L  TLLR 
Sbjct: 2  NQQQIKQLETKLWVSTNSLRANSKLTAAEYKDPVLGLTLLRY 43


>gi|187780115|ref|ZP_02996588.1| hypothetical protein CLOSPO_03711 [Clostridium sporogenes ATCC
           15579]
 gi|187773740|gb|EDU37542.1| hypothetical protein CLOSPO_03711 [Clostridium sporogenes ATCC
           15579]
          Length = 743

 Score = 46.1 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 60/223 (26%), Gaps = 36/223 (16%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKA--------IFEDFDFSSTIARL--EKAGLLYKI 136
           +L  L   N       +I  F DN K           ++ DF      L       L KI
Sbjct: 90  NLVNLVFNNVDKKFLEFI--FKDNIKYEHINPSYYSLDNVDFLHYEDNLFYRYNIFLNKI 147

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
               +  +          +  IYE +I     E  +    F TP  ++      +     
Sbjct: 148 IDEINKFDFI---HSSGEIGEIYEKII---AKEYKKSMGIFYTPEHIIDYILENVFYE-- 199

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA----DCGSHHKIPPILVPHGQELEPETH 252
             F         + D + G G F+  A + +     +     +       +  +    T 
Sbjct: 200 --FSPLENPFVKVIDISAGAGYFIIKAYDKLEKIFLENIKGLQEKYKENIYTIKKRDVTI 257

Query: 253 AVC------VAGMLIRRLE----SDPRRDLSKNIQQGSTLSKD 285
            V          +    +     +      +  I   + L KD
Sbjct: 258 NVTGEYYWQKENLHYHIINNCIYAADIDIYATQIISINLLLKD 300


>gi|162455958|ref|YP_001618325.1| putative DNA methylase [Sorangium cellulosum 'So ce 56']
 gi|161166540|emb|CAN97845.1| putative DNA methylase [Sorangium cellulosum 'So ce 56']
          Length = 1197

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 94/327 (28%), Gaps = 80/327 (24%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
           G+    +    R + ++Y+ L       V E      TP  V      L LDP  A F  
Sbjct: 170 GLCWRFEGSDTRFLGDLYQDL----SPSVRERYALLQTPDFVGAFILDLTLDPAIATFGL 225

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCG---------SHHKIPPILVPHGQELEPETH 252
                  L D TCG+G FL DA   + +             H    +   HG ++ P   
Sbjct: 226 EET---HLIDATCGSGHFLLDAFERICEHRMRTAPGIDVREHAAAALGQVHGVDINPYAV 282

Query: 253 AVCVAGMLIRRLESDPRRDLSK-------NIQQGSTLSK--------------------- 284
           A+    +++  +       L++        +    +L                       
Sbjct: 283 AIAKFRLMLAYMAKAELGTLAEVPQRLPIEVVVADSLLHGVVGTTRRFAELEGQRAEAWG 342

Query: 285 ------------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                       D   G+++   + NPP+    +       ++H       +    P   
Sbjct: 343 QPMFELEDQDASDRVFGRKYQAVVGNPPYIVPRDDGPRDEYRKHYRSCHRGYSLSAP--- 399

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL----IE 388
                       +L     GGG   ++ ++S +          E  + L+E  L    + 
Sbjct: 400 ---------FTERLFQLAEGGGYVGLINANSFMKR--------EFGKKLIEEVLAHLDLT 442

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKT 415
            I+             T +    N++ 
Sbjct: 443 RIIDTSGAYVPGHGTPTVILFGRNQRP 469


>gi|134287507|ref|YP_001109674.1| SNF2-related protein [Burkholderia vietnamiensis G4]
 gi|134131929|gb|ABO60623.1| SNF2-related protein [Burkholderia vietnamiensis G4]
          Length = 2273

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 80/267 (29%), Gaps = 55/267 (20%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
              ++    ++ TP+ +      LL +              ++ DP+ G GG  T     
Sbjct: 137 ADGLTGSPHEYYTPKAIASAMWDLLGE--------LGFAGGSVLDPSAG-GGVFTAT--- 184

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                      P      Q    ET        LI    +             ST     
Sbjct: 185 ----------RPKTAVMTQVELDETS--GTINGLINDGPTVNTTVSPFEAIAAST----- 227

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              + +   ++N PFG    +  +         +  RF       ++    F++    KL
Sbjct: 228 -PDEIYDAVITNVPFGNNAMRGGNE-------KKDARFQ-----KANLQEYFVLRTLQKL 274

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNI 403
           +     GG AA ++  S +    A       R+  L   L+   V    LP  +F     
Sbjct: 275 KP----GGLAAFIVPKSVVSGTGAKE-----RKLRLNASLMAEFVGGYRLPNSIFTTAAA 325

Query: 404 A-TYLWILSNRKTEERRGKVQLINATD 429
             T   I+  + +     KV+ + A +
Sbjct: 326 DVTTDLIVFRKFSRATAQKVEELQAQN 352


>gi|317154910|ref|YP_004122958.1| type I restriction system adenine methylase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316945161|gb|ADU64212.1| type I restriction system adenine methylase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 129

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 11  LANFIWKNAEDLWGDFKHTDFGKVIL 36
           +   ++K A+ L G+ + +D+  V+L
Sbjct: 98  IEAELFKTADKLRGNMEPSDYKHVVL 123


>gi|150400052|ref|YP_001323819.1| N-6 DNA methylase [Methanococcus vannielii SB]
 gi|150012755|gb|ABR55207.1| N-6 DNA methylase [Methanococcus vannielii SB]
          Length = 1041

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 64/222 (28%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI------------------PPILVPHGQE 246
               + DP CG+G FL  A+N++   G+                            +G +
Sbjct: 493 KNIKILDPACGSGAFLIQALNYLVKEGNQVNKIISYLQGGTTALFNLKADILRNNLYGVD 552

Query: 247 LEPETHAVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLSKDLF-----------------T 288
           L  E+  +    + +  +E  +    L  NI+ G++L  D+                   
Sbjct: 553 LNAESVEITKLSLWLNSVEKGEKLTALDNNIKCGNSLIDDMNVAGDKAFKWEEEFKEIIE 612

Query: 289 GKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNG------ELGRFGPGLPKISDGSMLFLMH 341
              F   + NPP+G K    +++ +  ++  G         +F  G              
Sbjct: 613 NGGFDVVIGNPPYGAKLSTVEQNYLINKYIQGGGETVISFLKFSYGT------------- 659

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                      GG    ++  S +F+    S  S ++  + E
Sbjct: 660 --------IKNGGYLGFIIPKSFIFSSNYQSIRSYLKEDIFE 693


>gi|307296716|ref|ZP_07576535.1| restriction methylase [Sphingobium chlorophenolicum L-1]
 gi|306877845|gb|EFN09070.1| restriction methylase [Sphingobium chlorophenolicum L-1]
          Length = 615

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 36/233 (15%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            +   P       ++++Y  L+     +       F TP  +      L  +        
Sbjct: 114 EVAFLPVLEGCHFLTSLYTTLL---PGKERSALGAFYTPPALTQRLLDLATEGGVD---- 166

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK-----IPPILVPHGQELEPETHAVCV 256
                  + DP  G G FL +A   +       +             G EL+P    +  
Sbjct: 167 --WSTARVLDPASGGGAFLLEAAARMRRALEGSEPAFILAQLGTRLTGFELDPHAAGLSQ 224

Query: 257 AGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           A +  L+  L +   R     ++   TL  +    + +   + NPP+G+           
Sbjct: 225 AALEVLLADLCAASGRAAPTFVKVCDTL--EATPAELYDLVVGNPPYGRVTLTV------ 276

Query: 315 EHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             +     R   G       ++  +F              GG  A +  +S L
Sbjct: 277 -AQRSRYARSLYGH-----ANLYGVFTDIALRWTRP----GGVIAYLTPTSVL 319


>gi|57640916|ref|YP_183394.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           kodakarensis KOD1]
 gi|57159240|dbj|BAD85170.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           kodakarensis KOD1]
          Length = 331

 Score = 45.7 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 75/258 (29%), Gaps = 55/258 (21%)

Query: 127 LEKAGLLYKIC--KNFSGIELHPDTVPDRVMS-NIYEHL-IRRFGSEVSEGAEDFMTP-- 180
           L+    L  +   + F      PDTV        +Y  + +R F  +  E  +    P  
Sbjct: 101 LDLPRKLGAVIHAQGFRVNLSKPDTVVRVYCGERLYAGIRLRYFDPKDFEKRKAHHRPFF 160

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R +       L               R + DP  G GG L +A                L
Sbjct: 161 RPIS------LHPRVSRALVNLTKATREILDPFMGAGGILIEAG------------LLGL 202

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
             +G ++ PE        +    +     +          T  +DLF  K+F    ++PP
Sbjct: 203 RVYGVDIRPEMVEGAETNLKHYGVRDYTLKLGDA------TRLEDLFPDKKFEAVATDPP 256

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +G                   GR    L + +             +      GGR AI  
Sbjct: 257 YGTAA-------------TLAGRKRDELYRKA----------LRSIYNVLEDGGRLAIAF 293

Query: 361 SSSPLFNGRAGSGESEIR 378
                FNG+A +     R
Sbjct: 294 P--TDFNGKAEAEAVGFR 309


>gi|299822755|ref|ZP_07054641.1| adenine-specific methyltransferase [Listeria grayi DSM 20601]
 gi|299816284|gb|EFI83522.1| adenine-specific methyltransferase [Listeria grayi DSM 20601]
          Length = 335

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 42/258 (16%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
                  MTP  +  +    +                 + DP CGTG  L+   N +   
Sbjct: 93  GIQTNHQMTPDSIGFILAYFI------EKLTKEKAEVAILDPACGTGNLLSTITNQL--- 143

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKNIQQGSTLSKDLFTG 289
                         ++   +   + V  +LI   L S   +    ++     LS      
Sbjct: 144 -----------LLTKDKVVQATGIEVDDLLISLALVSSDLQGQRTHLLHQDGLSN--LLV 190

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
                 +S+ P G  +  D+ A   E K      F            LF+       +  
Sbjct: 191 DPADIVVSDLPVGY-YPDDERANTYELKQASGHSF---------AHYLFIEQGMRYTKP- 239

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWI 409
              GG    ++  S      A S    + R++ ++  ++ I+ LP  LF        + I
Sbjct: 240 ---GGYLFFLIPDSMF----ADSEFPRVDRFIKKHGHMQGIIKLPETLFKSEQSRKSILI 292

Query: 410 LSNRKTE-ERRGKVQLIN 426
           L  +  E +   +V L N
Sbjct: 293 LQKQSAETKAPKEVLLAN 310


>gi|134101640|ref|YP_001107301.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003192|ref|ZP_06561165.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338]
 gi|133914263|emb|CAM04376.1| DNA methylase [Saccharopolyspora erythraea NRRL 2338]
          Length = 1218

 Score = 45.7 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 70/276 (25%), Gaps = 53/276 (19%)

Query: 35  ILPFTLLRRLECA------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSL 88
           +L    +R  E                  +      +        +     +   +  +L
Sbjct: 83  VLGTVFVRFCEDNGLIPDPFLAGWGERLAEAEERHEAYFRERP--QDNDRDWIIAAFDTL 140

Query: 89  STLGSTNTRNNLESYIASFSDNAK---AIFEDF----DFSSTIARLEKAGLLYKICKNFS 141
           +    T            F  N      I   F    D      R         +  +F+
Sbjct: 141 AAAHPTAKG--------LFDRNHNPLWEITPSFEAASDLIRFWRRRGDN---GHVHHDFT 189

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             EL       R + ++Y++L         +      TP  V      L L P    F  
Sbjct: 190 DPEL-----DTRFLGDLYQNL----SENARKTYALLQTPEFVEEFVLDLTLTPAIEEFGL 240

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQELEPETH 252
                    DP CG+G FL    + +       +                HG +  P   
Sbjct: 241 D---GLRTIDPACGSGHFLLGIFDRLLTRWRAKEPGTDSWTLIRRSLESVHGCDKNPFAV 297

Query: 253 AVCVAGMLIRRL------ESDPRRDLSKNIQQGSTL 282
           ++    +L+  L        D   +   N+  G +L
Sbjct: 298 SIARFRLLVAALRAAGDARLDGAAEFPINVAVGDSL 333


>gi|319639900|ref|ZP_07994629.1| hypothetical protein HMPREF9011_00226 [Bacteroides sp. 3_1_40A]
 gi|317388564|gb|EFV69414.1| hypothetical protein HMPREF9011_00226 [Bacteroides sp. 3_1_40A]
          Length = 860

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 49/214 (22%)

Query: 128 EKAGLLYKICKN--FSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDF 177
           ++   L+ I     F+  E  P+         ++  ++E+L+  +  E  E     +  F
Sbjct: 376 DEKRGLFSILNKYNFTIEENTPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSF 435

Query: 178 MTPRDVVHLATA-----LLLDPDDALFKESPGMIR------------------TLYDPTC 214
            TPR++V           L + D      +P                       + DP C
Sbjct: 436 YTPREIVKYMVDESLIAYLGESDFNRSLFAPNFKYEVAHVEEYKSIAEKLKAVKVLDPAC 495

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRL 264
           G+G F    +N +A+     ++   +            +G +++     +      I  +
Sbjct: 496 GSGAFPMGLLNRMAEVLQRIELNTNVYEQKLAIIENCLYGSDIQSIAAQITKLRFFISLI 555

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               R     N                  +  +N
Sbjct: 556 VDCERDASKPN------FGIPTLPNLETKFVAAN 583


>gi|146280356|ref|YP_001170511.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145558597|gb|ABP73206.1| N-6 DNA methylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 908

 Score = 45.7 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 77/243 (31%), Gaps = 47/243 (19%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-LLLDPDDALFKESPGMIRTLYDPT 213
           +SNIY+  ++   S          TP  +V L     L            G+   + DP 
Sbjct: 266 ISNIYQLFVKDAASS-------IYTPPALVRLILEEALSWERLDTLMAGDGV---ILDPA 315

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETHAVCVAGMLIRR 263
           CG+G FL +A   +      H                  HG ++E     +    + +  
Sbjct: 316 CGSGVFLVEAYKRLVLHWRLHNGWARPGIADLRSLLQRVHGVDIEEGAIELAAFSLCLSL 375

Query: 264 LESDPRRDLSKNIQQGSTLSKD-------------LFTGKRFHYCLSNPPFGKKWEKDKD 310
            ++    ++  ++Q    L+ +                       + NPPF       + 
Sbjct: 376 CDALQPEEIRASVQLFPALANETLHWSCFFEAKEQGLIKAPVAVLVGNPPF-------ES 428

Query: 311 AVEKEHKNGELGRF--GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
           A++ E       R+    GL   +  + LFL      L       G  A+V  +  L+N 
Sbjct: 429 ALKTEGAKRSYTRYSKDHGLLADTQLAYLFLHDAMELLAPK----GIVALVEPAGFLYNQ 484

Query: 369 RAG 371
            + 
Sbjct: 485 NSA 487


>gi|261879784|ref|ZP_06006211.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333544|gb|EFA44330.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 2069

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 122/412 (29%), Gaps = 94/412 (22%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH------VADCGSHHKIPPILVPHG 244
           ++             IR   DP+ G G F             +       +I   + P+G
Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMGAFTETFAKRAGMVDAMEKDLLTARISQAIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q             +++R+   +   +L                  ++    SN PFG  
Sbjct: 171 QG-----------NIIVRQEPFEAIGELKD--------------KDKYDLVTSNIPFG-- 203

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D    ++E+  G+          I +       +   K       GG  A + S   
Sbjct: 204 ---DFMVYDREYSKGKDVLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           L + R       IRR+L++N  + + + LP+ +F     T++ + L +L  +        
Sbjct: 254 LDSPRNE----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQ-------- 301

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--------DYRTF 473
                               + I++   +Q ++     +    S +         D++  
Sbjct: 302 ------------------TGKEISEGIEQQFVETLSVPKEEGSSVVFKHNSLFVGDWKDI 343

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
            +R I   R +                D +   ++   ++     ++    +        
Sbjct: 344 SHRTIATERIMGTDPYGKPA--WEYRFDGSIDDMAESIRTQLSLEVEQRFDRKLYETGIP 401

Query: 534 SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDT 585
              +E  K  E +  K+               ++DP+ D   D     +PD+
Sbjct: 402 MTEEERQKEAEKQLHKL--------GITVDLPKEDPKTDKEADNAYNLMPDS 445


>gi|303241342|ref|ZP_07327846.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
 gi|302591075|gb|EFL60819.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
          Length = 1570

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 4/130 (3%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      E +  + TP  +        L            +  T+ +P  G+  FL 
Sbjct: 519 FIYRLAGREREKSASYYTPEVLTKCLVKYALKELLEDKTADEILELTICEPAMGSAAFLN 578

Query: 222 DAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI-Q 277
           +A+N +A+     K       +    +  E +   + +A   +  ++ +P       +  
Sbjct: 579 EAINQMAEAYIDKKQKELGDNISYENRNQEIQRVKMYIADRNVYGIDLNPIAVELAEVSL 638

Query: 278 QGSTLSKDLF 287
             +T+ KD F
Sbjct: 639 WLNTIYKDGF 648


>gi|260583299|ref|ZP_05851074.1| adenine specific DNA methyltransferase [Haemophilus influenzae
           NT127]
 gi|260093659|gb|EEW77572.1| adenine specific DNA methyltransferase [Haemophilus influenzae
           NT127]
          Length = 1054

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 57/435 (13%), Positives = 130/435 (29%), Gaps = 105/435 (24%)

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           NL SYI+        + +   +   +  L +   L    K          T  +  + + 
Sbjct: 253 NLFSYISGV-----ELDDRIKW--IVDHLVE-IFLCSDVKKILENYGR-STKTNEPIIHF 303

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD------PDDALFKESPGMIRT---- 208
           YE  +  + S + +    + TP  VV+     + D             +   +       
Sbjct: 304 YETFLSEYDSSLRKARGVWYTPAPVVNFIVRAVDDILKTEFGLADGLADDSKITIQEDVA 363

Query: 209 ---------------------LYDPTCGTGGFLTDAMNHVADCG---------SHHKIPP 238
                                + DP  GTG FL+  + H+             S+ +   
Sbjct: 364 TKKRGGGSKLVKIDKEVHRVQILDPATGTGTFLSSVVKHIYANHFANMGGMWSSYVEENL 423

Query: 239 ILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTL-------------- 282
           I   +G E+   ++A+      +L+        ++    I   ++L              
Sbjct: 424 IPRLNGFEILMASYAMAHLQLDLLLTSQGYQHTKNQRFKIYLTNSLEEYHEDTGTLFTSW 483

Query: 283 -------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                  +  +         + NPP+          +    ++ +         +  +  
Sbjct: 484 LSNEANEANYIKRDTPVMVVMGNPPYSVSSNNKSSWILNLLEDYKKNLNE----RKINLD 539

Query: 336 MLFLMHL-ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVAL 393
             ++  +   +  +  N  G  A + ++S +     G    ++R+ LLE+ D I  I+ L
Sbjct: 540 DDYIKFIRYGQYFIDKNENGILAYISNNSFI----DGITHRQMRKSLLESFDKIY-ILDL 594

Query: 394 ----------PT-----DLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
                     P      ++F     ++  +++ + +K ++   +V               
Sbjct: 595 HGSTKKKEESPDGSKDENVFDIMQGVSINIFVKTGKKNKDDLAQVF------HCDLYGKR 648

Query: 438 GKKRRIINDDQRRQI 452
             K  ++ND     I
Sbjct: 649 DDKYNLLNDQSLDSI 663


>gi|301308515|ref|ZP_07214469.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
 gi|300833985|gb|EFK64601.1| type I restriction enzyme, M subunit [Bacteroides sp. 20_3]
          Length = 252

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 28/140 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        +           + + DP
Sbjct: 85  DAFGDLFMAISSKSGRQVN---GQFFTPPDICDLMVLCTDSGE-------TAAGKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + V  ML+     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLIAEDVSRTCCLMTVCNMLVHGCIGE----- 179

Query: 273 SKNIQQGSTLSKDLFTGKRF 292
              +    +L  + F     
Sbjct: 180 ---VIHHDSLCPENFMDGWM 196


>gi|240169376|ref|ZP_04748035.1| putative type II DNA modification enzyme [Mycobacterium kansasii
           ATCC 12478]
          Length = 1361

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 40/216 (18%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD--TVPDRVMSNIYEHLI- 163
           FS +A +I E     +  A L     L +I    +G     D   +    +  +YE L+ 
Sbjct: 404 FSRDALSILEGAKLPNR-AFLAAVRALAQIEDPVTGTPRPVDYRNLDSEELGGMYESLLA 462

Query: 164 ---RRFGSE-----------VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-- 207
              R    +             + +  + TP +++ L     L+P       S       
Sbjct: 463 YTPRYNADDRTFTLDVATGSERKKSGSYYTPSELIALVLDEALNPLIDEALRSADPEAAL 522

Query: 208 ---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----------------LVPHGQELE 248
              ++ DP CG+G F+  A   +A   +  +                       +G +L 
Sbjct: 523 LDLSVVDPACGSGHFVVAAARRIAAALATVRTGDTEPAPAALRAATADVIEHCVYGVDLN 582

Query: 249 PETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283
                +    + +   ++D P   L  + + G+ L 
Sbjct: 583 DLAIEITKVALWLEAFDADRPFPFLDSHFRVGNALL 618


>gi|148656016|ref|YP_001276221.1| hypothetical protein RoseRS_1882 [Roseiflexus sp. RS-1]
 gi|148568126|gb|ABQ90271.1| hypothetical protein RoseRS_1882 [Roseiflexus sp. RS-1]
          Length = 1422

 Score = 45.7 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 48/175 (27%), Gaps = 44/175 (25%)

Query: 151 PDRVMSNIYEHLIRR-----------------FGSEVSEGAEDFMTPRDVVHLATALLLD 193
               + ++YE L+                   FGSE  +    + TP  +V+      L 
Sbjct: 441 DTEELGSVYESLLDYHPAITFDTRGRPTFVLTFGSE-RKATGSYYTPPSLVNELVQSALA 499

Query: 194 PDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHV----------------A 228
           P            R          + DP CG+G FL  A   +                 
Sbjct: 500 PVLEERLRPCRTAREKEAALLALNVLDPACGSGHFLLAAARRLGKELARIRTGEDEPAPE 559

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282
                 +       +G +  P    +    + +    E  P   L   I+ G +L
Sbjct: 560 RVREAIRDVVAHCIYGVDRNPLAVELARVALWLESHAEGKPLTFLDHRIKCGDSL 614


>gi|257064108|ref|YP_003143780.1| predicted helicase [Slackia heliotrinireducens DSM 20476]
 gi|256791761|gb|ACV22431.1| predicted helicase [Slackia heliotrinireducens DSM 20476]
          Length = 1847

 Score = 45.7 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 92/324 (28%), Gaps = 52/324 (16%)

Query: 40   LLRRLECALEP--TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             L+ L  +L    T     +       +    E+  + A ++  N    ++  +      
Sbjct: 998  FLKGLRDSLNDGITEPEAVDMLAQHIITLPVFEALFRGAQFADSNPVSIAMEKMI----- 1052

Query: 98   NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN 157
            + L  Y     D  + + E                LY+  +      +H D+   R++  
Sbjct: 1053 DALREYTLETEDEKRELAE----------------LYRSVE-IRAESIHTDSGRQRIIKE 1095

Query: 158  IYEHLIRRFGSEVSEGAEDFMTPRDVVHLA---TALLLDPDDALFKESPGMIRTLYDPTC 214
            +YE    +  ++ SE      TP  +V      T  LL  +        G+   + DP  
Sbjct: 1096 LYEKFFSQAFTKTSEKMGIVYTPNQIVDFILRSTNALLHHEFGQTFADEGVH--ILDPFT 1153

Query: 215  GTGGFLTDAM-NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD-- 271
            GTG F+ + + +         +       H  E+    + +     +     S    D  
Sbjct: 1154 GTGTFIVNLLNDDALMPSDKIEYKYANELHCNEIMLLAYYIATIN-IEHAYHSRIEGDYI 1212

Query: 272  LSKNIQQGSTLSK----DLFTGKRF---------------HYCLSNPPFGKKWEKDKDAV 312
                     T       D    + F                  + NPP+    +   D  
Sbjct: 1213 PFPGAVLTDTFQMTEEGDPLDLEVFTQNSKRVVEQNRLPVRVIIGNPPYSIGQKNANDNN 1272

Query: 313  EKEHKNGELGRFGPGLPKISDGSM 336
            +        GR      K S+  +
Sbjct: 1273 QNMKYKTLDGRISDTYAKQSEAGL 1296


>gi|332346202|gb|AEE59536.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 228

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 9/142 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L              F TP  V  +   + L    ALF++   +  TL +P
Sbjct: 85  DFLGSVFMQL-----ELGDTYRGQFFTPWSVASMMAQMQLGNVKALFEDKSFI--TLREP 137

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G        +     +++P    +    + +  +  +     
Sbjct: 138 ACGAGSMILAMADTLNRSGY--PAYRRMWVSATDIDPLAAGMAYIQLSLCGVAGEVVIGN 195

Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294
           S   ++   L         + Y
Sbjct: 196 SLCNERRRVLLTPGHYLGNWSY 217


>gi|255292505|dbj|BAH89620.1| type II restriction enzyme, methylase subunit [uncultured
           bacterium]
 gi|255292795|dbj|BAH89899.1| type II restriction enzyme, methylase subunit [uncultured
           bacterium]
 gi|255293039|dbj|BAH90134.1| type II restriction enzyme, methylase subunit [uncultured
           bacterium]
          Length = 629

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 81/301 (26%), Gaps = 68/301 (22%)

Query: 1   MTEFTGSAASLAN--FIWKN----AEDLW---------GDFKHTDFGKVIL---PFTLLR 42
           M    G+ A L N   I       A  L          GD   T     I+    FT+L 
Sbjct: 36  MDPNAGTVAQLTNLRHINDAQRETARILRDTLAHYTASGDMNATQGLDRIVREQAFTVLN 95

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
           RL         A      A G     +++  +  G+  Y     +         R  L S
Sbjct: 96  RL---------AALRMAEARGLLVESVDNGFQAKGFQLYARLAGTGLGETGDAYRTYLFS 146

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
                S +   +F+ +  S       +   L ++    +  ++ P    D  +  IY++ 
Sbjct: 147 VFDELSQDLPGLFDRY--SPQGRLFPREAALLQVLNLINAADIAPLWREDETIGWIYQYF 204

Query: 163 IRRFGSEVSEGAED-------------FMTPRDVVHLATA-------------------- 189
             +   +    A               F TPR VV                         
Sbjct: 205 NSKEERKAMRDASQAPRNSRELAVRNQFFTPRYVVEFLVDNTLGRLWFNATGGQTVLRER 264

Query: 190 ---LLLDPDDALFKES---PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
              LL+ PD+               L DP CG+  F   A +   +              
Sbjct: 265 CQYLLVKPDEQPQATERLRDPRTLKLLDPACGSMHFGLYAFDLFLEIYREAWAWEEQHGP 324

Query: 244 G 244
           G
Sbjct: 325 G 325


>gi|219364571|ref|YP_002455624.1| hypothetical protein BafACA1_AB32 [Borrelia afzelii ACA-1]
 gi|216752826|gb|ACJ73483.1| hypothetical protein BafACA1_AB32 [Borrelia afzelii ACA-1]
          Length = 1058

 Score = 45.7 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 86/288 (29%), Gaps = 40/288 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV------- 150
           NN++ +I S     + I    +  + I    +   L  I +    +    D         
Sbjct: 250 NNIKEFIPSNFSLIRDIL---NLINDIGVNREYNSLKWILEEIINVVNSIDAELIFNEFS 306

Query: 151 -------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                          YE  + ++ + + +    + TP  VV+   + L       FK   
Sbjct: 307 FTRTTLISKDPYLYFYEDFLAKYDANLRKAKGVYYTPSPVVNFIVSSLQKVLKKEFKLEL 366

Query: 204 GM----IRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPET 251
           G       T+ D   GTG FL + +  + D  +              +   +G E     
Sbjct: 367 GFATRDKVTVLDFATGTGTFLLEVIKAILDKITEKSGKRPEYIDNHILKNIYGFEYLMAP 426

Query: 252 HAVCVAGM---LIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +AV    +   L      D   + ++  +   +TL       ++        P   +  +
Sbjct: 427 YAVAHLKLSQYLKEVCNVDFDNERTRLQVFLTNTLDITKIPDQKG--LAGFFPAISEENE 484

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
             + V+ +     LG         ++        + N ++      G+
Sbjct: 485 LTNEVKHKEILVILGNPPYSTGSKNNNEY-----ILNLMKKYKEIEGK 527


>gi|255015106|ref|ZP_05287232.1| putative helicase [Bacteroides sp. 2_1_7]
          Length = 1656

 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 76/283 (26%), Gaps = 34/283 (12%)

Query: 128  EKAGLLYKICKNFSGIELHPDTVPDRV--MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVH 185
            +   +L K  +N        D +  +   + N+YE   +    +  +      TP + V 
Sbjct: 844  KDTEVLNKFYENVRMNVGDIDNLEGKQTLIKNLYEKFFKGAFPKTVDKLGIVYTPVECVD 903

Query: 186  LATALLLDPDDALFK-ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                 + D     F          + DP  GTG F+T  +          +       H 
Sbjct: 904  FIIHSVDDILRKEFDCSLSDENVHILDPFTGTGTFITRLLQSGLIRPEDLERKYKNEIHC 963

Query: 245  QELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSK------------------ 284
             EL    + +    +  +   L         + I    T                     
Sbjct: 964  NELVLLAYYIADVNIESVFHSLVKRDTYLPFEGICLTDTFQTTENEENVLDQTWFPENAA 1023

Query: 285  --DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS---DGSMLFL 339
              D          + NPP+    +   D  +         R      K +   + + L+ 
Sbjct: 1024 NVDKQKKAPVRVIMGNPPYSVGQKSANDNAQNLSYAHLDKRIAETYAKAAQATNKNSLYD 1083

Query: 340  MHLANKLE-----LPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
             ++               GG  A + + + + +G A  G  + 
Sbjct: 1084 SYIKAFRWASDRIADCKDGGVVAFISNGAWI-DGNAQEGFRKC 1125


>gi|307701270|ref|ZP_07638291.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
 gi|307613431|gb|EFN92679.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16]
          Length = 933

 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 74/280 (26%), Gaps = 79/280 (28%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD----ALFKESP 203
             +   +   I+E  +     E         T  + +H     L   D     A  +E+P
Sbjct: 304 SQISPTIFGGIFESTL---NPETRSQGGMHYTSPENIHKVIDPLFLDDLKAELAAVEETP 360

Query: 204 GMIR-----------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI------- 239
           G+                      DP  G+G FLT+    +    +              
Sbjct: 361 GLTPRQKTNRYKDFHHKLCSLKFLDPASGSGNFLTETYLQLRHLENQVLFKLQSGQAAMA 420

Query: 240 -------------LVPHGQELEPETHAVCVAGMLIR--------------RLESDPRRDL 272
                           +G E+      V  A + I                 + D     
Sbjct: 421 LGEDQATGQRVSLSQFYGIEINEFAVKVAEAALWISRLKANGEPGMISADNNKHDFPLLE 480

Query: 273 SKNIQQGSTLSKDL---FTGKRFHYCLSNPPFG------KKWEKDKDAVEKEHKNGELGR 323
             NI   + LS D        +  Y L NPPF       K  + +  AV    KN     
Sbjct: 481 HANITCANALSLDWNQVLPAGQCTYVLGNPPFIGARNQVKAQKAELQAVFHHAKN----- 535

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
                    +   +   +L     +  N G R A V ++S
Sbjct: 536 -------SGNIDYVACWYLKAAEYMQLNPGVRTAFVSTNS 568


>gi|213962067|ref|ZP_03390332.1| adenine specific DNA methyltransferase [Capnocytophaga sputigena
           Capno]
 gi|213955420|gb|EEB66737.1| adenine specific DNA methyltransferase [Capnocytophaga sputigena
           Capno]
          Length = 1002

 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 61/232 (26%), Gaps = 59/232 (25%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                  + + YE  +  F  +V +    + TP  VV+     L       F    G+  
Sbjct: 293 KDASKDPIVHFYEDFLEAFDPQVRKDLGVWYTPLPVVNFMVRTLDTLLKEQFHLPQGIAD 352

Query: 208 T---------------------------LYDPTCGTGGFLTDAMNHVADCGSHH------ 234
           T                           + DP  GTG FL   + ++A   +        
Sbjct: 353 TSKIKVQTQQDNKIAGFDIEEKEYHRVQILDPATGTGTFLAQIIEYIAQQFASQQGIWQN 412

Query: 235 --KIPPILVPHGQELEPETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---- 286
             +   +   +G EL   ++A+      ML+       +      I   ++L +      
Sbjct: 413 YVQEHLLPRLNGFELLMASYAIAHLKLDMLLS-QTQITQSTNRIQIYLTNSLEEPTPDRS 471

Query: 287 -----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
                                     + NPP+          +    ++ + 
Sbjct: 472 LPLARWLSDEANEANRIKRDTPVMCIIGNPPYNGSSTNKGSWIMNLMEDYKK 523


>gi|213423394|ref|ZP_03356381.1| hypothetical protein Salmonentericaenterica_38422 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 272

 Score = 45.7 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           E A  + ++    S + +  +  P   +  IY           +     + TP  V +  
Sbjct: 178 EDANNMARLL---SEVVMGLEFSPTDFLGRIYM-----ISGLGNFHNAQYFTPYSVSYAM 229

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             + L               T+ DP  G G  +      + +
Sbjct: 230 ARMTLSDRIPELSSGERDFITVSDPASGAGSMVVALAEAMLE 271


>gi|298482759|ref|ZP_07000943.1| DNA methylase [Bacteroides sp. D22]
 gi|298271222|gb|EFI12799.1| DNA methylase [Bacteroides sp. D22]
          Length = 1346

 Score = 45.7 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 121/384 (31%), Gaps = 72/384 (18%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          ++    A F  +   +R+  +P+ G GGFL  AM+   D      
Sbjct: 98  AFYTP----KFLVDAVVRQIHATFSGNGLTMRSFLEPSAGIGGFLPVAMSGTYD------ 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                           +A+    ++   + S    +         T+ +  F   +F   
Sbjct: 148 ----------------YAIEK-DLVSGLILSLLHENTITRTTGFETIDRQDFEHTKFDVI 190

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG      +    +  K G  G +      I +       +   K     N GG 
Sbjct: 191 ASNIPFG----NFRVFDAELWKKG--GMYEQATKTIHN-------YFFVKAVELLNEGGL 237

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A V S           G   +R +L+ +  + + V LP  LF +T+   + + L I   
Sbjct: 238 LAFVTSRGIADT----PGNKFVREYLVNHADLISAVRLPDMLFMQTSGIEVGSDLLIFQK 293

Query: 413 R--KTEERRGKVQLI---------------NATDLWTSIRNEGKKRRIINDDQRRQILDI 455
              K    + +   +               +A  ++T  +        I  +Q  + +  
Sbjct: 294 HTQKAVLSQREQLFLQVSREKADTTGTMTEHANKIFTLPKTTLATGSRIVQNQYGKYVRK 353

Query: 456 YV-SRENGKFSRMLD---YRTFG-YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPL 510
           Y    +    S+ L       FG Y R  +        +  +     L  ++   K  P 
Sbjct: 354 YQWQGDENAMSQYLAALLKLDFGRYFRKSLFTGGGQDGVYTQ---MSLFGNVAAIKQPPK 410

Query: 511 HQSFWLDILKPMMQQIYPYGWAES 534
            +  + D LKP M+      + E 
Sbjct: 411 GKRAYTDELKPWMKDGAMLLFEEQ 434


>gi|119513547|ref|ZP_01632565.1| adenine specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
 gi|119461796|gb|EAW42815.1| adenine specific DNA methyltransferase [Nodularia spumigena
           CCY9414]
          Length = 835

 Score = 45.4 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 65/175 (37%), Gaps = 24/175 (13%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-------DTVPDRVM 155
           YI+      K +F+    + +++++ K+  +  + +  + +++         +T  +  +
Sbjct: 240 YISDRIPFLKGLFDIVIATDSVSKIHKS--IENLVELLNTVDMTNILETFGQETRTEDPV 297

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESPGMIRTLY 210
            + YE  +  + +++ +    + TP  VV+         L+ +    L         T+ 
Sbjct: 298 IHFYETFLAAYEAKLRKSRGVYYTPEPVVNFIVRAVNDILVNEEIFDLQHGLGNRKVTIL 357

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVP----------HGQELEPETHAVC 255
           DP  GTG FL   +  + D  S + I                 G EL    + + 
Sbjct: 358 DPATGTGTFLYAVIKQIRDNVSKYGIDKWNTFLRDAKLINRLFGFELLMTPYTIA 412


>gi|269126191|ref|YP_003299561.1| putative type II DNA modification enzyme [Thermomonospora curvata
           DSM 43183]
 gi|268311149|gb|ACY97523.1| putative type II DNA modification enzyme [Thermomonospora curvata
           DSM 43183]
          Length = 1055

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 63/227 (27%), Gaps = 52/227 (22%)

Query: 109 DNAKAIFEDFDFSSTIAR--LEKAGLLYKI-----CKNFSGIELHPDTV---PDRVMSNI 158
                IF   D    +    L+ A L   +      ++       P          +  +
Sbjct: 133 PALGGIFARTDADRVLEDTELDDADLCAAVRALSQIRHGRPARPRPIDFCRLDVAELGAL 192

Query: 159 YEHLIRR------------F----GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E L++             F         +    + TP  +V       LDP      ++
Sbjct: 193 HESLLKHRPCRQSAARRRAFVLLPAGTGRKSGGSYYTPPALVDCLLDSALDPLLDEAVKT 252

Query: 203 PGMIR---------TLYDPTCGTGGFLTDAMNHVAD----------------CGSHHKIP 237
               R         T+ DP CG+G FL  A   +A                      +  
Sbjct: 253 GRTRREQERALLALTVCDPACGSGRFLVAAAGRIARRLAFVRTGDPQPPPAALRRALRET 312

Query: 238 PILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLS 283
                +G +L+P    +    + +       P R   + I+ G+ L 
Sbjct: 313 LTTCVYGVDLDPLAVELAKVALWLETGEPGRPLRSWDERIKVGNALL 359


>gi|120536967|ref|YP_957025.1| helicase domain-containing protein [Marinobacter aquaeolei VT8]
 gi|120326801|gb|ABM21110.1| helicase domain protein [Marinobacter aquaeolei VT8]
          Length = 2570

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 66/226 (29%), Gaps = 49/226 (21%)

Query: 191  LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
            L+ P           +  + +P+CG G F                 P +    G EL+  
Sbjct: 918  LIGPMWEALDRMGLPLNRVLEPSCGIGNF--------KAFMPESVAPKVKSFTGIELDRY 969

Query: 251  THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            T  +  A                  I Q S   +  F    F   +SN PFG       D
Sbjct: 970  TARLAQA------------AHPDARILQ-SGFERTSFPDSFFDTVISNIPFGD--YGMFD 1014

Query: 311  AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
                E +                    F +   +K+      GG  A + S+  L     
Sbjct: 1015 PEHPERRTTIHN--------------AFFLKGLDKVRP----GGVVAFITSAYVL----- 1051

Query: 371  GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
               ++ +R+ +++   +     LP   F     T + T +  L  +
Sbjct: 1052 DGKDTAVRKEIMDRAHVMGTYRLPAGTFEKTTGTEVVTDVIFLQKK 1097


>gi|298370200|ref|ZP_06981516.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298281660|gb|EFI23149.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1493

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 87/330 (26%), Gaps = 54/330 (16%)

Query: 158  IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGT 216
            +Y+   R     ++E      TP +VV      + D     FK S       + DP  GT
Sbjct: 892  LYDKFFRNAFPRMTERLGIVYTPVEVVDFIIKSVEDVLQHEFKSSLQDKGVHILDPFTGT 951

Query: 217  GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPR 269
            G F+T  +                  H  E+    + +           +L   ++ +  
Sbjct: 952  GTFITRLLQSGIIPRDRLPEKYKNEIHANEIVLLAYYIATINIESAYHGILAGNIDGNVS 1011

Query: 270  RD----LSKNIQQGSTLSKDLFTGK------------------RFHYCLSNPPF--GKKW 305
             D      + I    T                                + NPP+  G++ 
Sbjct: 1012 DDVPYVPFEGICLTDTFQMYEKGDMLDEMLVDNSARRKRQKALDIRVIIGNPPYSAGQES 1071

Query: 306  EKDKDAVEKEHKNGELGRFGPG---LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362
              D +A  +        R          + +      +             G    V ++
Sbjct: 1072 ANDNNANIEYPHLDARIRQTYAEHSTATLKNALYDSYIRAIRWASDRIGQQGVIGFVTNA 1131

Query: 363  SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYL 407
              +    A      +R+ L E      I  L  +              +F   +     +
Sbjct: 1132 GWVEANTADG----LRKCLAEEFSSLYIFHLRGNQRTSGERSRKEGGKIFGSGSRAPIAI 1187

Query: 408  WILSNRKTEERRGKVQLINATDLWTSIRNE 437
             IL      E+RG++   +  D  T  +  
Sbjct: 1188 SILVKNPQAEKRGQIYFHDIGDYLTREQKL 1217


>gi|254304353|ref|ZP_04971711.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324545|gb|EDK89795.1| site-specific DNA-methyltransferase (adenine-specific)
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 718

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 85/223 (38%), Gaps = 36/223 (16%)

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
           ++ +   V +E+++     F      + + S+ ++ H+   L       G+   ++ ++ 
Sbjct: 324 YKNNIKEVTEEYRSKLENNFKIPNEILKNTSLEWIFHIL--LINQLKEKGKGISLVKTNI 381

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQL 424
           L+          IR++ +EN  IE+I+ LP ++         L + S         K++ 
Sbjct: 382 LY----EPKNKNIRKYFVENGYIESIIYLPKNMLIDYPFPLALIVFSKE-----NKKIKF 432

Query: 425 INATDLWTSIR-----------------NEGKKRRIINDDQRRQILDIYVSRENGKFS-- 465
           I+A       +                  + +   II D    +I+D+  +++N K S  
Sbjct: 433 IDAYKFCKMEKFKIEFIDNYFKNPKISEIKEQNINIIIDTNVEKIIDLINNQKNIKESFS 492

Query: 466 -RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
            ++ D     Y  +        +F +    L + + +I ++ +
Sbjct: 493 KKIEDIVEKDYNLVVTE-----NFEILVDILKKFKNEIKFKDI 530


>gi|296269521|ref|YP_003652153.1| hypothetical protein Tbis_1545 [Thermobispora bispora DSM 43833]
 gi|296092308|gb|ADG88260.1| conserved hypothetical protein [Thermobispora bispora DSM 43833]
          Length = 1195

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 56/174 (32%), Gaps = 25/174 (14%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            + H   +  R + ++Y+ L       V +      TP  +        L P    F   
Sbjct: 175 HDFHSPELDTRFLGDLYQDL----SEHVRKRYALLQTPEFIGDFILDRTLTPAIDDFGLD 230

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI---------PPILVPHGQELEPETHA 253
                 L DP CG+G FL  A + +    +               +   HG ++ P   A
Sbjct: 231 ---GLKLIDPACGSGHFLLGAFDRLLQAWAAQAPGMDERVRVQKVLDSIHGVDINPTATA 287

Query: 254 VCVAGMLIRR--------LESDPRRDLSKNIQQGST-LSKDLFTGKRFHYCLSN 298
           +    +++          L+      L  N+  G + L    F G++    + +
Sbjct: 288 ITKFRLMVAALQACGVTRLDDPGIPALRLNVATGDSLLYASKFGGRQTELQVQD 341


>gi|94985645|ref|YP_605009.1| putative type II DNA modification enzyme [Deinococcus geothermalis
           DSM 11300]
 gi|94555926|gb|ABF45840.1| putative type II DNA modification enzyme [Deinococcus geothermalis
           DSM 11300]
          Length = 1318

 Score = 45.4 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 49/209 (23%)

Query: 115 FEDFDFSSTIARL---EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR------- 164
             + D  + I  L   E  G L  +  NF+ ++          + +IYE L+        
Sbjct: 366 LANSDLYAAIRALSLIEDGGTLKSV--NFTDLDAE-------ELGSIYESLLELHPEINT 416

Query: 165 --------RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-----TLYD 211
                          +    + TP  ++ L     LDP        P  +       + D
Sbjct: 417 ATGTFTLSSAAGNERKTTGSYYTPTGLIELLLESSLDPVIEDALTKPDPVAALKALNVVD 476

Query: 212 PTCGTGGFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVC 255
           P CG+G FL  A   +                    +  +       +G +L P    + 
Sbjct: 477 PACGSGHFLLAAARRIGLALARAEHDVTQPSPEQLRAATREVIAHCIYGVDLNPMAIELA 536

Query: 256 VAGMLIRR-LESDPRRDLSKNIQQGSTLS 283
              + +   +   P   L   ++ G++L 
Sbjct: 537 KVALWLESAVPGKPLAFLDHRLRSGNSLL 565


>gi|256847935|ref|ZP_05553379.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714995|gb|EEU29972.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 305

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 78/248 (31%), Gaps = 40/248 (16%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
           MTP  +  L   L+                T+ DP  GTG  LT  MN++A         
Sbjct: 68  MTPDTIGMLIAYLI------EQIVGLDQPSTILDPVVGTGNLLTTVMNYLAKVSK----- 116

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +  +G + +    A       ++ L           +     +S       +    ++
Sbjct: 117 QPVQGYGIDNDESMLAAASVSSELQGLPL--------QLIHQDAISN--LDVPQVDLAVA 166

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           + P G         ++   KN             S  S +  + + + +     GG   A
Sbjct: 167 DLPIG------YYPLDDNAKN-------YQTKAASGHSYVHHLLIEHTMNYLVPGGF--A 211

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
             +  S LF            +W+     ++  + LPTD+F        + IL N  +  
Sbjct: 212 FFVVPSDLF---KTKESENFVKWIHSVAFLQGFINLPTDMFRNAEAQKSILILQNHGSGA 268

Query: 418 RRGK-VQL 424
            + K V L
Sbjct: 269 YQAKQVLL 276


>gi|294785906|ref|ZP_06751194.1| helicase [Fusobacterium sp. 3_1_27]
 gi|294487620|gb|EFG34982.1| helicase [Fusobacterium sp. 3_1_27]
          Length = 2042

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 66/293 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            +   +      F TP+ V+        D       E       + +P+C  G F+ +  
Sbjct: 524 EYNKAMESTLTAFYTPKVVI--------DNIYTKLIEFGFKEGRILEPSCAVGNFIGNLP 575

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +               +G EL+  +  +               +   ++  Q     +
Sbjct: 576 KEL----------DSSQVYGVELDSISGNIAK-------------QLYPQSEIQVKGFEE 612

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F+   F   + N PFG     +   +++E+                  + L   +   
Sbjct: 613 TNFSNNFFDIAIGNVPFG-----NFKILDREYDR---------------YNFLIHDYFFA 652

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       GG  A + SS  L           +R++L E   +   V LP  +F     T
Sbjct: 653 KTIDKVKSGGIIAFITSSGTLDKKDNS-----VRKYLGERCELLGAVRLPNSVFKGVAGT 707

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453
            + + +  L        R K+Q ++    +       G K      +    I+
Sbjct: 708 EVTSDILFLKK------RDKIQELDNETWYEIAEDKNGIKYNKYFVNNPEMII 754


>gi|257125725|ref|YP_003163839.1| helicase [Leptotrichia buccalis C-1013-b]
 gi|257049664|gb|ACV38848.1| helicase domain protein [Leptotrichia buccalis C-1013-b]
          Length = 2131

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 56/369 (15%), Positives = 109/369 (29%), Gaps = 68/369 (18%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E     + E          +  S   ++   F  T E     L  +   NN    I    
Sbjct: 509 EKETENIIENDEIIHPYADEENSKDNISKN-FKITEEIQSEKLLPSERLNNNIEAIKV-- 565

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR-FG 167
              K + E          L K      +   F   +       +   + + E+L +  + 
Sbjct: 566 --LKKLSERKATDDEKITLSKYVGWGGLADVFDENKG---GQWEEARNFLKENLTQEEYD 620

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
           +  +     F TP+ V+               ++       + +P+CG G F+ +  + +
Sbjct: 621 NAKASTLTAFYTPKIVIDSIYK--------GIQQLGFEGGNILEPSCGVGNFIGNLPDEL 672

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                          +G EL+  +  +              +     NIQ      K  F
Sbjct: 673 EKSK----------IYGVELDSVSGNIAK------------KLYPESNIQV-KGFEKTEF 709

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +   F   + N PFG     D   +++E++                 + +   +   K  
Sbjct: 710 SNNSFDVVIGNVPFG-----DFKVMDREYEKL---------------NFMIHDYFIAKSL 749

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                GG  A +       +G     +  +RR++ E   +   + LP D F     T + 
Sbjct: 750 DKVKKGGIMAFIT-----SSGTFDKKDDSVRRYIGERAELLGAIRLPNDTFKGVAGTEVT 804

Query: 405 TYLWILSNR 413
           + +  L  R
Sbjct: 805 SDIIFLKKR 813


>gi|254880892|ref|ZP_05253602.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254833685|gb|EET13994.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 1128

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 63/214 (29%), Gaps = 49/214 (22%)

Query: 128 EKAGLLYKICKN--FSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDF 177
           ++   L+ I     F+  E  P+         ++  ++E+L+  +  E  E     +  F
Sbjct: 376 DEKRGLFSILNKYNFTIEENTPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSF 435

Query: 178 MTPRDVVHLATA-----LLLDPDDALFKESPGMIR------------------TLYDPTC 214
            TPR++V           L + D      +P                       + DP C
Sbjct: 436 YTPREIVKYMVDESLIAYLGESDFNRSLFAPNFKYEVAHVEEYKSIAEKLKAVKVLDPAC 495

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRL 264
           G+G F    +N +A+     ++   +            +G +++     +      I  +
Sbjct: 496 GSGAFPMGLLNRMAEVLQRIELNTNVYEQKLAIIENCLYGSDIQSIAAQITKLRFFISLI 555

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
               R     N                  +  +N
Sbjct: 556 VDCERDASKPN------FGIPTLPNLETKFVAAN 583


>gi|255527088|ref|ZP_05393977.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296188152|ref|ZP_06856544.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
 gi|255509240|gb|EET85591.1| N-6 DNA methylase [Clostridium carboxidivorans P7]
 gi|296047278|gb|EFG86720.1| N-6 DNA Methylase [Clostridium carboxidivorans P7]
          Length = 542

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 99/340 (29%), Gaps = 68/340 (20%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
              D  +   Y+ L+ +      +    F TP  ++                        
Sbjct: 1   MYKDVKLEKSYDVLMEK---NRKKSYGCFYTPDYIIDYIIKNTF----DNLNVIKTPFVK 53

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSH---------------------------------HK 235
           + DP+CG+G FL   +  + +  +                                    
Sbjct: 54  ILDPSCGSGYFLIKVIKFLVEEFTKNIDALSKKYEEEEYIINGDCKLKGKDYWKVENIIL 113

Query: 236 IPPILVPHGQELEPETHAVCVAG----------MLIRRLESDPRRDLSK---NIQQGSTL 282
                  +G +++     +C             +++  +  D      K   N  + S  
Sbjct: 114 HIVNHCVYGADIDYNAVEICKQNIVSTCENKKGLILNVVCCDSLIKWEKAYINKTEKSNY 173

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             D F  K++ Y + NPP+     K+K   + E  N  +  +   +   +     FL   
Sbjct: 174 LCD-FWSKKYDYIVGNPPWVSLNRKNKQCKDIELINYYINEYEGNIYLPNLYEY-FLKRS 231

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL-FFRT 401
              L++     GR   VL                 R+ ++ N    +I  L  ++ F   
Sbjct: 232 LQVLKMH----GRIGFVLPD----RLAKNLQYKNFRKKIILN---YSIKNLAFEITFPNI 280

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
           N    ++IL    +++       ++    +   +++  K 
Sbjct: 281 NTDVMIFILERSYSKDNEID-LYVHKKRNYRIYQSQYLKN 319


>gi|240142784|ref|YP_002967297.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens AM1]
 gi|240012731|gb|ACS43956.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens AM1]
          Length = 1329

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 46/216 (21%)

Query: 127 LEKAGLL---YKICKNFSGIELHPDTVPD---RVMSNIYEHLIRR------------FGS 168
           L    LL   Y++    +   + P    D     + ++YE L+              F  
Sbjct: 395 LSNRDLLKAIYRLAWLKTDDGVMPVNWRDMQTEELGSVYESLLELTPRITADGREMLFAE 454

Query: 169 ------EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG------MIRTLYDPTCGT 216
                    +    + TP  +V +     +DP                +   + DP CG+
Sbjct: 455 GLETRGNARKTTGSYYTPDSLVQVLLDTTIDPVMDQAVAGAADPVRALLGLRVIDPACGS 514

Query: 217 GGFLTDAMNH---------------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           G FL  A                          +       HG +  P    +    + I
Sbjct: 515 GHFLLAAARRLAARVARARNDGVASAEQYRDAVRDVVRQCIHGVDRNPMAVDLTKVALWI 574

Query: 262 RRLES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +E   P   L  NI  G  L      G++    L
Sbjct: 575 ESIEPGKPLGFLDGNIVCGDALLGTFGYGEKLDAVL 610


>gi|282852175|ref|ZP_06261528.1| hypothetical protein HMPREF9209_0035 [Lactobacillus gasseri 224-1]
 gi|282556665|gb|EFB62274.1| hypothetical protein HMPREF9209_0035 [Lactobacillus gasseri 224-1]
          Length = 234

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 62/212 (29%), Gaps = 24/212 (11%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESF------VKVAGYSFYNTSEYSLSTLG 92
             + ++                  GG N  LE+       +   G   +           
Sbjct: 27  LFIAKIVDEFNTPDDKALSFQNYMGGENEPLETLYTRIENLYSQGLRDFIKIYIDTDKDI 86

Query: 93  STNTRNNLESYIASFSDNAKAIF-------EDFDFSSTIAR---LEKAGLLYKICKNFSG 142
           +   +      I   S+    I         DF F         ++   +L ++    + 
Sbjct: 87  NKIKQILNIEGINDESELVHRIEHLLSKVNADFQFKDVYDNQTYIDNLNILKELVDLIAP 146

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +L         + + +E ++    +   + A  F TP  + H   + L  P       S
Sbjct: 147 YKLKYAKKQQF-LGDFFESIL---SNGFKQEAGQFFTPVPLAHFIVSSLPLPQRTKTIIS 202

Query: 203 PGMIR----TLYDPTCGTGGFLTDAMNHVADC 230
               R     + D  CG+G F+T+ M+ +   
Sbjct: 203 DESSRQLLPRMIDFACGSGHFITEYMDEMQKI 234


>gi|83956080|ref|ZP_00964562.1| hypothetical protein NAS141_02766 [Sulfitobacter sp. NAS-14.1]
 gi|83839646|gb|EAP78825.1| hypothetical protein NAS141_02766 [Sulfitobacter sp. NAS-14.1]
          Length = 1179

 Score = 45.4 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 102/343 (29%), Gaps = 60/343 (17%)

Query: 22  LWGDFKHTDFGKVILPFTLLRRLE--CALEPTRSAVREKYLAFGGSNIDLESFVKVAGYS 79
           L G F   D   V LP      +   C  E  +  +           +D+E      G  
Sbjct: 352 LLGQFDQNDEPDV-LP------VSDKCIHEVLKQLLMLGGERLSYKTLDVEQI----GSV 400

Query: 80  FYNTSEYSLSTLGSTNTR-----NNLESYIA-------SFSDNAKAIFEDFDFSS---TI 124
           +     ++++    ++         + +YI        +     K + +  DF +     
Sbjct: 401 YETVMGFTVTRSKGSSIALRSGKGGIPAYIDLEAVLGKAPDKRTKYLLDTIDFKTTPAQS 460

Query: 125 ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             L+ A  + ++        +     PD+ ++     +++   ++         TPR + 
Sbjct: 461 KLLKPAKTIDELLTALDKK-IDERGSPDKRVTTAGTIILQP--TDERRKTGSHYTPRSLT 517

Query: 185 HLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAMNHVADCGSHH------ 234
                  L+P  A   E+P   +     + DP  G+G FL +    + +           
Sbjct: 518 APIVKEALEPVLAQLGENPTPDQVLDLKVCDPAMGSGAFLVETCRALGEQLEAAWARHPH 577

Query: 235 ---------------KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQ 278
                          +       +G +       +    + +  L  D       + ++ 
Sbjct: 578 LLPDEARTDPQVFARREVAKRCLYGVDKNHMATDLAKLALWLVTLAKDEDFSFLDHALKT 637

Query: 279 GST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           G +   L+ D      +    + P F + + +  D    + + 
Sbjct: 638 GDSLVGLNFDQLAEFDWQTDGTYPGFTQSFRRKVDEARGDRQR 680


>gi|160888203|ref|ZP_02069206.1| hypothetical protein BACUNI_00611 [Bacteroides uniformis ATCC 8492]
 gi|156862338|gb|EDO55769.1| hypothetical protein BACUNI_00611 [Bacteroides uniformis ATCC 8492]
          Length = 1980

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 88/281 (31%), Gaps = 47/281 (16%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F S  +     F TP+D+V +  +                     DP+ GTG F+   
Sbjct: 92  RYFSSLKNSVLTAFYTPQDIVSVLAS--------ELGNYGIAPSRFLDPSSGTGVFVDAF 143

Query: 224 MNHVADCG--------SHHKIPPILVPHGQELEPETHAVCVAGM----LIRRLESDPRRD 271
             H A                      H  E +P    +  AG+    ++   +      
Sbjct: 144 QQHSAQQQLSEQQSAKQQSSEQQSSEQHSSEQQPSRTGLSPAGLSRPEIVCFEKDLLTGK 203

Query: 272 LSKNIQQGSTLSKDLFTG------KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
           +  ++   + +    F         RF    SN PFG     D        K+  L R  
Sbjct: 204 ILSHLHPEAKVEITGFEDSGLRYLNRFDITASNIPFGDVAVFDPSFT----KSKSLVRQH 259

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385
                 S  +  FL     K       GG  A + S   L +         IR  L+++ 
Sbjct: 260 AA---KSLHNYFFL-----KGLDNIREGGILAFITSQGVLDSPANE----NIRYQLMQHS 307

Query: 386 LIEAIVALPTDLFF---RTNIATYLWILSNR--KTEERRGK 421
            + + + LP +LF     T + + L IL  +  KTE     
Sbjct: 308 HLVSAIRLPNNLFTDGAGTEVGSDLIILQKKSDKTEPLTDD 348


>gi|117621762|ref|YP_854353.1| hypothetical protein BAPKO_3518 [Borrelia afzelii PKo]
 gi|110891148|gb|ABH02310.1| hypothetical protein BAPKO_3518 [Borrelia afzelii PKo]
          Length = 1070

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 86/288 (29%), Gaps = 40/288 (13%)

Query: 98  NNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV------- 150
           NN++ +I S     + I    +  + I    +   L  I +    +    D         
Sbjct: 262 NNIKEFIPSNFSLIRDIL---NLINDIGVNREYNSLKWILEEIINVVNSIDAELIFNEFS 318

Query: 151 -------PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
                          YE  + ++ + + +    + TP  VV+   + L       FK   
Sbjct: 319 FTRTTLISKDPYLYFYEDFLAKYDANLRKAKGVYYTPSPVVNFIVSSLQKVLKKEFKLEL 378

Query: 204 GM----IRTLYDPTCGTGGFLTDAMNHVADCGSH--------HKIPPILVPHGQELEPET 251
           G       T+ D   GTG FL + +  + D  +              +   +G E     
Sbjct: 379 GFATRDQVTVLDFATGTGTFLLEVIKAILDKITEKSGKRPEYIDNHILKNIYGFEYLMAP 438

Query: 252 HAVCVAGM---LIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEK 307
           +AV    +   L      D   + ++  +   +TL       ++        P   +  +
Sbjct: 439 YAVAHLKLSQYLKEVCNVDFDNERTRLQVFLTNTLDITKIPDQKG--LAGFFPAISEENE 496

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
             + V+ +     LG         ++        + N ++      G+
Sbjct: 497 LTNEVKHKEILVILGNPPYSTGSKNNNEY-----ILNLMKKYKEIEGK 539


>gi|313667255|ref|YP_004049656.1| protein of unknown function DUF450 [Oceanithermus profundus DSM
           14977]
 gi|313153886|gb|ADR37736.1| protein of unknown function DUF450 [Oceanithermus profundus DSM
           14977]
          Length = 1102

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 53/206 (25%), Gaps = 45/206 (21%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP----GMIRTLYDP 212
             YE  +  +  ++ +    + TP +VV     L    D       P         + DP
Sbjct: 305 YFYEDFLAAYDPKMRKDYGVYYTPVEVVGAMVRL--THDALRRMGKPAGLADEGVLVLDP 362

Query: 213 TCGTGGFLTD----AMNHVADCGSHHKIPPILVPHGQELEPETHAV---CVAGMLIRRLE 265
             GTG F       A+           +P       Q L      +    VA + ++R  
Sbjct: 363 AAGTGTFPLATFDLALEEARSRFGEGIVPAKAAELAQRLFAFEILIGPYAVAHLRLQRAY 422

Query: 266 SDPRRDLSKNIQQGSTLSKDLF------------------------TGKRFHYCLSNPPF 301
            +   +    +    TL                                     + NPP+
Sbjct: 423 LEEGAEGKPQVYLTDTLEAPELRPLAHLGVLEKPLVKEHEEAMAVKRDAPVLVVIGNPPY 482

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPG 327
            +    D          G   RFG G
Sbjct: 483 DRHSADDPK--------GGWVRFGFG 500


>gi|299144396|ref|ZP_07037476.1| type I restriction-modification system, M subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518881|gb|EFI42620.1| type I restriction-modification system, M subunit [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 56

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           +        ++   YE+ I +F +       +F TP  +V    A+L
Sbjct: 1   MDETEASKDLLGRTYEYCIAQFAAYEGTKGGEFYTPSSIVRTIVAIL 47


>gi|331649967|ref|ZP_08351043.1| conserved hypothetical protein [Escherichia coli M605]
 gi|331041224|gb|EGI13378.1| conserved hypothetical protein [Escherichia coli M605]
          Length = 2255

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 119/384 (30%), Gaps = 74/384 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 89  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++   L ++         ++               E      +   +
Sbjct: 273 RKHPAEMAEKIPLVDEGTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319

Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             G++ RI+V    ++     K   + R E+ I W  L+    S   D++     ++   
Sbjct: 320 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLNMAEPSPTADVVDEGEMRLING 379

Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553
            W +      I+++  K LK+ A+
Sbjct: 380 VWQKYAGGRWIEADAGKELKIDAA 403


>gi|119358135|ref|YP_912779.1| hypothetical protein Cpha266_2367 [Chlorobium phaeobacteroides DSM
           266]
 gi|119355484|gb|ABL66355.1| hypothetical protein Cpha266_2367 [Chlorobium phaeobacteroides DSM
           266]
          Length = 203

 Score = 45.4 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 58/181 (32%), Gaps = 14/181 (7%)

Query: 390 IVALPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDD 447
           IV+LP  +F      + T     S  ++     K+   + + +       GKK   +   
Sbjct: 9   IVSLPGGVFTAAGAGVKTNHLFFSKGQSTR---KIWYYDLSSI-----KVGKK-TPLTIK 59

Query: 448 QRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKL 507
              +   +   R + + S  ++      +  +   P +         +A+L   +   K 
Sbjct: 60  TFEEFFRLLPERPDSELSWTINMDERKQKAAEEACPFKEKATATSQKVAQLSERLKELKK 119

Query: 508 SPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRK 567
           +   +S  ++  + M+  +       +      K  +     +KA      A  +    +
Sbjct: 120 TFARKSKVIEEAEKMIADLTREARTNA---AKAKEIQDAVYDLKAVNPNKKADTDNHTPE 176

Query: 568 D 568
           D
Sbjct: 177 D 177


>gi|325853297|ref|ZP_08171337.1| hypothetical protein HMPREF9303_1178 [Prevotella denticola CRIS
           18C-A]
 gi|325484359|gb|EGC87285.1| hypothetical protein HMPREF9303_1178 [Prevotella denticola CRIS
           18C-A]
          Length = 1229

 Score = 45.4 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 115/369 (31%), Gaps = 55/369 (14%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------NHVADCGSHHKIPPILVPHG 244
           ++      F      IR   DP+ G G F           + +       +I   + P+G
Sbjct: 111 IVAAIADTFSSVDVPIRRCLDPSAGMGAFTEIFATKAGTVDAMEKDLLTARISQAIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q             +++R+   +   +L                  ++    SN PFG  
Sbjct: 171 QG-----------NIIVRQAPFEAIGELE--------------EKDKYDLITSNIPFG-- 203

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D    ++E+  G+          I +       +   K       GG  A + S   
Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           L + +       IRR+L++N  + + + LP+ +F     T + + L +L  +  +E    
Sbjct: 254 LDSPKNE----AIRRYLMQNSQLISALRLPSGMFSENAGTEVGSDLIVLQKQSGKEIGES 309

Query: 422 V--QLINA-TDLWTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476
           +  Q + + +       +   K   + D + + I    I   R  G+         + + 
Sbjct: 310 IEQQFVASVSAPIAEGSSVVFKHNSLFDGEWKDIAHRTIATERTMGRDPYGKPAWEYHFD 369

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
                    +   L      R +  +    +    +    + +K + +        E   
Sbjct: 370 GSIEDLAESIRTQLSLEIEQRFDRKLYETGIPMTEEERQKEAVKQLRKLGVTVDLPEEEP 429

Query: 537 KESIKSNEA 545
           K   +++ A
Sbjct: 430 KTDKEADNA 438


>gi|289764892|ref|ZP_06524270.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
 gi|289716447|gb|EFD80459.1| superfamily II DNA and RNA helicase [Fusobacterium sp. D11]
          Length = 1914

 Score = 45.4 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 75/278 (26%), Gaps = 66/278 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             +          F TP+ V+      L            G    + +P+ G G F+ + 
Sbjct: 441 EEYTKARESTLTAFFTPKVVIDNIYKGL-----DNLGFKEGK---ILEPSSGIGNFIGNI 492

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +               +  EL+  +  +  A                 NI Q     
Sbjct: 493 PEKME----------NSKFYSVELDSLSGRIEKA------------LYPQANI-QIDGFE 529

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   + N PFG  ++ +    ++ +                        +  
Sbjct: 530 NTDFRNNFFDVAVGNVPFG-DFKVNDKEYDRNNFLIHD-------------------YFF 569

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A +       NG     +  IRR++ E   +   V LP + F     
Sbjct: 570 AKSIDKVRPGGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 624

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           T + + +  L  R+          +   D + +  +  
Sbjct: 625 TEVTSDIIFLKKREER-------FVGEEDWYKTSTDSK 655


>gi|218691176|ref|YP_002399388.1| hypothetical protein ECED1_3528 [Escherichia coli ED1a]
 gi|218428740|emb|CAR09680.2| conserved hypothetical protein [Escherichia coli ED1a]
          Length = 265

 Score = 45.4 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 9/142 (6%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + +++  L         +    F TP  V  +   + L    ALF+  P +  TL +P
Sbjct: 122 DFLGSVFMQL-----ELGDKYRSQFFTPWGVACMMAQMQLGNVKALFENKPFI--TLSEP 174

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            CG G  +    + +   G        +     +++P    +    + +  +  +     
Sbjct: 175 ACGAGSMILAMADTLNRSGY--PAYRRMWVSETDIDPLAAGMAYIQLSLCGVAGEVVIGN 232

Query: 273 SKNIQQGSTLSKDLFTGKRFHY 294
           S   ++   L         + Y
Sbjct: 233 SLCNERRRILLTPGHYLGNWSY 254


>gi|323186569|gb|EFZ71913.1| helicase conserved C-terminal domain protein [Escherichia coli
           1357]
          Length = 2221

 Score = 45.4 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 119/384 (30%), Gaps = 74/384 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 55  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 93

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 94  TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 142

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 143 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 183

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 184 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 238

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++ + L ++         ++               E      +   +
Sbjct: 239 RKHPAEMAEKIPLVDESTLESA--------NVLWSTFISG-----KWFEKDGRRFVHGTQ 285

Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             G++ RI+V    ++     K   + R E+ I W  L     S   D++     ++   
Sbjct: 286 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMRLING 345

Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553
            W +      I+++  K LK+ A+
Sbjct: 346 VWQKYAGGRWIEADAGKELKIDAA 369


>gi|120609278|ref|YP_968956.1| type III restriction enzyme, res subunit [Acidovorax citrulli
            AAC00-1]
 gi|120587742|gb|ABM31182.1| type III restriction enzyme, res subunit [Acidovorax citrulli
            AAC00-1]
          Length = 1609

 Score = 45.4 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 79/363 (21%), Gaps = 57/363 (15%)

Query: 40   LLRRLECALEPT--RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
             L+ L+  L PT  R    E       +    ++      +   N    +L  +      
Sbjct: 750  FLKGLQDTLNPTVGRDEAVEMLAQHILTLPVFQALFADTDFPTRNVVGRALQDIVDKLDA 809

Query: 98   NNLE---SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
              +      +  F DN +                K  ++  +   F              
Sbjct: 810  AAVGSETEGLQKFYDNVRERVALAKSDK-----SKQDIIRNLYDTFFNNAFP-------- 856

Query: 155  MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPT 213
                      R             TP  VV              F +S G     + DP 
Sbjct: 857  ----------RMAE----RLGIVYTPVQVVDFILHSANSALRKHFGQSLGNEGVHILDPF 902

Query: 214  CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
             GTG F    +       S          H  E+    + +    +              
Sbjct: 903  SGTGTFPVRLIQSGLINRSDLPRKFASELHANEIVLLAYYIATINIETAYHGVMGEYLPF 962

Query: 274  KNIQQGSTLSKDLFTG-------------------KRFHYCLSNPPFGKKWEKDKDAVEK 314
              +    T                           +     + NPP+  + E + D  + 
Sbjct: 963  DGMVLTDTFQMTEDNDLVDKVVLPENNARVERQLAEPIRVIVGNPPYSAQQESENDNNKN 1022

Query: 315  EHKNGELGRFGPGLPKISDGSM---LFLMHLANKLELPPNGG--GRAAIVLSSSPLFNGR 369
                    R        S   +   L+  ++          G  G  A V + S L    
Sbjct: 1023 LAYPTLDDRIRQTYAAQSSAKLVKNLYDSYIRAIRWASNRIGERGIVAFVTNGSFLDANN 1082

Query: 370  AGS 372
               
Sbjct: 1083 MDG 1085


>gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
            DSM 20306]
 gi|295968218|gb|EFG81467.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
            DSM 20306]
          Length = 1656

 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 78/291 (26%), Gaps = 44/291 (15%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
             + E+ +  +    LEK    Y+        E+   +   +V+  +YE   ++   + +E
Sbjct: 819  DVLEEANLDTETDSLEK---FYESV-RVRASEVSSASGKQQVIKELYERFFQKAFKKQAE 874

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPTCGTGGFLTDAMNHVAD 229
                  TP ++V     L    D +      G+      + DP  GT  F+   +     
Sbjct: 875  SLGIVYTPVEIVDFI--LRAADDVSKIHFGKGLTDEGVCILDPFAGTSTFMVRLLQSGLI 932

Query: 230  CGSHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                            E+              T+    A    R+ E++P       I  
Sbjct: 933  KPEDLARKYANELFATEIMLLAYYVSAVNIETTYNALRAEEAFRKGETEPEYVPFDGIAL 992

Query: 279  GSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNG 319
              T       D+   + F               +  + NPP+        D         
Sbjct: 993  ADTFQIHEEGDILDLEVFKNNNQRIERQKTAPINVVIGNPPYSAGQHSANDNNANLKYPT 1052

Query: 320  ELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPL 365
               R        S   + + L+   +             G  A V +   L
Sbjct: 1053 LDKRIAETYAAKSTATNKNSLYDSYLRAFRWATDRIGSQGIVAFVSNGGWL 1103


>gi|256026903|ref|ZP_05440737.1| helicase [Fusobacterium sp. D11]
          Length = 1923

 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 75/278 (26%), Gaps = 66/278 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             +          F TP+ V+      L            G    + +P+ G G F+ + 
Sbjct: 450 EEYTKARESTLTAFFTPKVVIDNIYKGL-----DNLGFKEGK---ILEPSSGIGNFIGNI 501

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +               +  EL+  +  +  A                 NI Q     
Sbjct: 502 PEKME----------NSKFYSVELDSLSGRIEKA------------LYPQANI-QIDGFE 538

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   + N PFG     DK+         +                 F     
Sbjct: 539 NTDFRNNFFDVAVGNVPFGDFKVNDKEYDRNNFLIHDY----------------FFAKSI 582

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
           +K+      GG  A +       NG     +  IRR++ E   +   V LP + F     
Sbjct: 583 DKVRP----GGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 633

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG 438
           T + + +  L  R+          +   D + +  +  
Sbjct: 634 TEVTSDIIFLKKREER-------FVGEEDWYKTSTDSK 664


>gi|294101455|ref|YP_003553313.1| restriction modification system DNA specificity domain protein
           [Aminobacterium colombiense DSM 12261]
 gi|293616435|gb|ADE56589.1| restriction modification system DNA specificity domain protein
           [Aminobacterium colombiense DSM 12261]
          Length = 505

 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 104/304 (34%), Gaps = 62/304 (20%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL----IRRFG 167
           K + E+FD ++ I R     +L+++ K  +   L            I+E L    +  F 
Sbjct: 9   KKLKENFDKTANIQR--DREVLFQLMKKTTEDHLGFFPTDRDDFLEIFEALKDIDLVDFT 66

Query: 168 SE--VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
            E   ++     ++P+ +    +  +        +  P  +             +T+A  
Sbjct: 67  IEIYKNDRMGTVISPQYLTEYISERI-------QRLCPQKV------------LITEAEK 107

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
           H++  G   K  P +          T  +    +L++             I+   ++   
Sbjct: 108 HLSGLGDLIKRFPNIKIT------LTTHLKPMHILLQ---LAFGEYEHVKIRFE-SIYMP 157

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               +++ Y  S P F  + E                     L + SDG  +   ++ N 
Sbjct: 158 CLENEKYDYVYSLPIFSNRPEGTSQTF---------------LTRDSDG--IAFENMLNH 200

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-RTNIA 404
           L    +      I++ +   F   A  G  ++R ++ EN  +E +  LP   F   T I 
Sbjct: 201 L----DENSTLDIIVPAKITF---ASLGYEKLRSYITENFYVENMYLLPEGTFRPATAIK 253

Query: 405 TYLW 408
           TYL+
Sbjct: 254 TYLF 257


>gi|223932999|ref|ZP_03624993.1| SNF2-related protein [Streptococcus suis 89/1591]
 gi|223898316|gb|EEF64683.1| SNF2-related protein [Streptococcus suis 89/1591]
          Length = 1967

 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 51/377 (13%), Positives = 101/377 (26%), Gaps = 72/377 (19%)

Query: 45  ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI 104
           + +         E+          +E+  ++    FY      L+       R+ +E+ I
Sbjct: 553 DDSENGHNDTDLEETDNQIPEEEVVETIPEIPVTDFYFPE--DLTDFYPKTARDKVETNI 610

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI- 163
            +       + ++ +     A   +  LL K    + G+        +   S   E L  
Sbjct: 611 VAI-----RLVKNLEVEHRNASPSEQELLAKYVG-WGGLANEFFDDYNPKFSKEREELKS 664

Query: 164 ----RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
               + +          + T   ++               +        + DP+ GTG F
Sbjct: 665 LVTDKEYSDMKQSSLTAYYTDPTLIRQMW--------DKLERDGFTGGKILDPSMGTGNF 716

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                  + +             +G EL+  T A+                +    I+  
Sbjct: 717 FAAMPKQLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGF 757

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
            T+    F    F   +SN PF              +      R+        D   +  
Sbjct: 758 ETV---EFNDDSFDLVISNVPFA-------------NLRIADNRY--------DKPYMIH 793

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
            +   K     + GG+ AI+        G        I + + +       V LP   F 
Sbjct: 794 DYFLKKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRDTTEFLGGVRLPDSAFK 848

Query: 399 --FRTNIATYLWILSNR 413
               T++ T +      
Sbjct: 849 AIAGTSVTTDMLFFQKH 865


>gi|319641273|ref|ZP_07995972.1| DNA methylase [Bacteroides sp. 3_1_40A]
 gi|317387146|gb|EFV68026.1| DNA methylase [Bacteroides sp. 3_1_40A]
          Length = 1661

 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 112/369 (30%), Gaps = 74/369 (20%)

Query: 104 IASFSDNAKAIFEDFDFSST--IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           + S S N KAI       S    A  E+  +L +    F GI+   D   D+ +      
Sbjct: 6   LTSLSANIKAIETAVAIHSQGRTATQEEKQVLAQY-SGFGGIKDVLDLGTDKPLDKEVAG 64

Query: 162 LIRRFGSEVSEGAE-------------------DFMTPRDVVHLATALLLDPDDALFKES 202
           L+ R    +   A                     F TP          +       F  +
Sbjct: 65  LLNRLLDALRTLAGGDEAACRSLVESIKSSVLTAFYTP----QFLIDAVAAQIHKTFSAN 120

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              +++  +P+ G GGFL  AM                                    I 
Sbjct: 121 GLQMQSFLEPSVGIGGFLPVAMPGTRSYAFEKDT------------------------IT 156

Query: 263 RLESDPRRDLSKNIQQG-STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            L      + +  +  G  T+       ++F    SN PFG      +       K G  
Sbjct: 157 GLVLSLLHEDATTVTAGFETIGTQELEHRKFDVIASNIPFG----NFRVFDADLWKKG-- 210

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           G +      I +    F+  +        + GG  A V S          +G   +R +L
Sbjct: 211 GIYEQATKTIHN--YFFVKAM-----ELLSEGGLLAFVTSRGVADT----AGNKFVREYL 259

Query: 382 LENDLIEAIVALPTDLFFRTN---IATYLWILSN--RKTE-ERRGKVQLINATDLWTSIR 435
           + +  + + V LP  LF +T+   + + L I      KT    R ++ L  A +++    
Sbjct: 260 VNHADLISAVRLPDALFMQTSGIEVGSDLLIFQKHTNKTALSAREQMFLQVAKEMYDMNG 319

Query: 436 NEGKKRRII 444
              +    +
Sbjct: 320 TMTENANRL 328


>gi|78189274|ref|YP_379612.1| methylase [Chlorobium chlorochromatii CaD3]
 gi|78171473|gb|ABB28569.1| methylase [Chlorobium chlorochromatii CaD3]
          Length = 933

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 58/215 (26%), Gaps = 43/215 (20%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSH--------------------------HKIPPIL 240
              +DP CG G FL      +                                     + 
Sbjct: 353 MRFFDPACGCGNFLVITYREIRQLEIEVLQQYFMLTSKMYKAGVTQLETDIETISKIDVN 412

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPR-------------RDLSKNIQQGSTLSKDLF 287
             +G E+E     +    + +   + + R                + NI   + L KD  
Sbjct: 413 QFYGIEIEEFPARIAQVALWLTDHQMNMRLSQAFGQTYVRLPLQHAPNIICDNALRKDWE 472

Query: 288 ---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                K   Y L NPPF  K  ++   +  +           GLP       + L ++  
Sbjct: 473 TVIPSKEHLYILGNPPFIGKQNRNAGQM-ADMDVICQPLKAKGLPNYGVLDYVALWYIKA 531

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            L +  +      +  +S       A   E  +R+
Sbjct: 532 ALFIENSNVKVTFVSTNSITQGEQVAALWEFLLRK 566


>gi|237745126|ref|ZP_04575607.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229432355|gb|EEO42567.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 2042

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 54/378 (14%), Positives = 111/378 (29%), Gaps = 90/378 (23%)

Query: 110 NAKAIFE--DFDFSSTI--ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR 165
           N   I E  +F+ +  I   +L  +  L    +    ++L      +       + ++ +
Sbjct: 433 NILTIIEEKNFNITDEIVPEKLTPSERLNNNIEAIKTLKLLEKENRNAT--YEEQIILSK 490

Query: 166 FG-----------------SEVSEGAEDFMTPRDVVHLATALL---------LDPDDALF 199
           +                   E  +  ++ +T  +      ++L         +D      
Sbjct: 491 YVGWGGLADTFDESKSGQWEEARKFLKENLTTDEYNKAMESILTAFYTPKVVIDNIYTKL 550

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
            E       + +P+C  G F+ +    +               +G EL+  +  +     
Sbjct: 551 IEFGFKEGRILEPSCAVGNFIGNLPKEL----------ASSQVYGIELDSISGNIAK--- 597

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                     +   ++  Q     +  F+   F   + N PFG     +   +++E+   
Sbjct: 598 ----------QLYPQSEIQVKGFEETNFSNNFFDIAIGNVPFG-----NFKILDREYDR- 641

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                          + L   +   K       GG  A + SS  L           IR+
Sbjct: 642 --------------YNFLIHDYFFAKTIDKVKSGGIIAFITSSGTLDKKDNS-----IRK 682

Query: 380 WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTS-IR 435
           +L E   +   V LP  +F     T + + +  L        R K+Q +N    +     
Sbjct: 683 YLGERCELLGAVRLPNSVFKGVAGTEVTSDILFLRK------RDKIQELNNEIWYEIAED 736

Query: 436 NEGKKRRIINDDQRRQIL 453
             G K      D    I+
Sbjct: 737 KNGLKYNKYFVDNPEMII 754


>gi|301161275|emb|CBW20813.1| putative DNA methylase [Bacteroides fragilis 638R]
          Length = 1828

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 82/253 (32%), Gaps = 48/253 (18%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               S  +     F TP  VV            A  +E+  + + + DP+ G G F   +
Sbjct: 93  SYMQSLKNSVMTAFYTPAPVVR--------EIAASLREAGIVPKRILDPSAGMGEF-IRS 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + +A  G         +  GQ L           + IR  E    +             
Sbjct: 144 FDTIAAEGHTTFGFEKDILTGQMLSALH---PKDKIRIRGFEEIETKLNGS--------- 191

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                   F    SN PFG     D        K  E  R    + ++S  +  F+    
Sbjct: 192 --------FDVVSSNIPFGDVAVFDPVFS----KTAESAR---KVARMSLHNYFFV---- 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A + S   +    A S E  IR WL+ N  + + V LP +LF     
Sbjct: 233 -KGVDMLREGGVLAFITSQGVM---NAPSNE-PIREWLMNNSRLVSAVRLPNNLFSENAG 287

Query: 401 TNIATYLWILSNR 413
           T + + L +L  +
Sbjct: 288 TEVGSDLIVLQKQ 300


>gi|262408016|ref|ZP_06084564.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|262354824|gb|EEZ03916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 1285

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 83/311 (26%), Gaps = 62/311 (19%)

Query: 68  DLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIA 125
           + E     A   F N   +  L            + +   FS NA K+   +F + + + 
Sbjct: 308 EEEILTLFAHVPFLNGGLFECLDKPKDLYLNQEYDIFYDGFSRNATKSSNGNFKYRAFVP 367

Query: 126 RL------EKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SE 169
            +      E    L  + K  NF+  E  P          ++  ++E+L+  +       
Sbjct: 368 NILFFNDDEDQPGLINLLKQYNFTIEENSPTDAVISLDPELLGRVFENLLAAYNPETQES 427

Query: 170 VSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP--------------------- 203
             +    F TPR +V           LL        E                       
Sbjct: 428 ARKSTGSFYTPRPIVDYMVDEAIKSYLLGKRLDRISEEKLNALFKERTVSTDWTDSNKDA 487

Query: 204 ----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELE 248
                    + DP CG+G F    +  + D     K   +              +G +++
Sbjct: 488 IANALKQVKILDPACGSGAFPMGCLLRIVDIIELLKGDTVDRYQLKLTIIENCVYGVDIQ 547

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P    +C     I  +      D S      +    +        +  +N          
Sbjct: 548 PIAMLICKLRFFISLICEQNDIDFSS---PETNFGINTLPNLETKFVAANTLISANIRNY 604

Query: 309 KDAVEKEHKNG 319
           +D    + K  
Sbjct: 605 EDDWTNDEKLD 615


>gi|255016180|ref|ZP_05288306.1| type IIS restriction endonuclease, putative [Bacteroides sp. 2_1_7]
          Length = 1285

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 83/311 (26%), Gaps = 62/311 (19%)

Query: 68  DLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIA 125
           + E     A   F N   +  L            + +   FS NA K+   +F + + + 
Sbjct: 308 EEEILTLFAHVPFLNGGLFECLDKPKDLYLNQEYDIFYDGFSRNATKSSNGNFKYRAFVP 367

Query: 126 RL------EKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SE 169
            +      E    L  + K  NF+  E  P          ++  ++E+L+  +       
Sbjct: 368 NILFFNDDEDQPGLINLLKQYNFTIEENSPTDAVISLDPELLGRVFENLLAAYNPETQES 427

Query: 170 VSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP--------------------- 203
             +    F TPR +V           LL        E                       
Sbjct: 428 ARKSTGSFYTPRPIVDYMVDEAIKSYLLGKRLDRISEEKLNALFKERTVSTDWTDSNKDA 487

Query: 204 ----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELE 248
                    + DP CG+G F    +  + D     K   +              +G +++
Sbjct: 488 IANALKQVKILDPACGSGAFPMGCLLRIVDIIELLKGDTVDRYQLKLTIIENCVYGVDIQ 547

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P    +C     I  +      D S      +    +        +  +N          
Sbjct: 548 PIAMLICKLRFFISLICEQNDIDFSS---PETNFGINTLPNLETKFVAANTLISANIRNY 604

Query: 309 KDAVEKEHKNG 319
           +D    + K  
Sbjct: 605 EDDWTNDEKLD 615


>gi|171914144|ref|ZP_02929614.1| hypothetical protein VspiD_23235 [Verrucomicrobium spinosum DSM
           4136]
          Length = 1252

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 27/147 (18%)

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK---AIFEDFDFS--- 121
             E+    A   F N   +    L  +      + Y+  FS N K    + +   F    
Sbjct: 330 QDEALALFADIPFLNGGLF--ECLDQSEEGTGKKRYLDGFSRNPKMRPHVPDRLFFDSGE 387

Query: 122 ---------STIARLEKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRF 166
                        + EK   L  I     F+ +E  P          ++  ++E+L+  +
Sbjct: 388 TADLAEVYGDKKRKAEKVTGLISILNRYKFTIVENTPIDQEIALDPELLGKVFENLLASY 447

Query: 167 GSEVS----EGAEDFMTPRDVVHLATA 189
             E      +    F TPR +V     
Sbjct: 448 NEETKTTARKQTGSFYTPRPIVEYMVD 474


>gi|15611680|ref|NP_223331.1| hypothetical protein jhp0613 [Helicobacter pylori J99]
 gi|4155166|gb|AAD06194.1| putative [Helicobacter pylori J99]
          Length = 1167

 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 86/327 (26%), Gaps = 43/327 (13%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           +  ++     +   N +N +   +         +            L+    LY+  K  
Sbjct: 339 HIITKPIFDAIFGDNIKNPIAKALDKMVLKLSDL----GLEGETKDLKN---LYESVKTE 391

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALF 199
           +       +  +  + N+Y    +    + SE      TP +VV                
Sbjct: 392 AARAKSQKSQQEL-IKNLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFN 450

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAVCVA 257
            +      T++DP  GTG F+   ++   D  S    K          ++   ++ + + 
Sbjct: 451 TDFNDQSITIFDPFMGTGSFIARLLSKENDFISDEALKEKFQKGLFAFDIVLLSYYIALI 510

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTL-----SKDL----------------------FTGK 290
            +       D      KNI    +L       D                          +
Sbjct: 511 NITQAAQNRDSSLKNFKNIALTDSLDYLEEKNDKGVIPGFEYLFEDLKENKEIKTTMEKQ 570

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-----LFLMHLANK 345
                + NPP+    + + D  +         R      K S           L+H    
Sbjct: 571 NIRVIIGNPPYSSGAKSENDNNQNLSHPKLEKRVYETYGKNSTAQNKNSTRDTLIHSIRM 630

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGS 372
                   G    V++ S + +  A  
Sbjct: 631 ASDLLKDKGVLGFVVNGSFIDSKSADG 657


>gi|316985075|gb|EFV64028.1| type I restriction enzyme, modification chain [Neisseria
          meningitidis H44/76]
          Length = 69

 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 5  TGSAASLANFIWKNAEDLWGDFKHTDFGK 33
                L   +W   ++L G    + + +
Sbjct: 29 QSKKNQLYASLWAGCDELRGGMDASLYKE 57


>gi|253755095|ref|YP_003028235.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
 gi|251817559|emb|CAZ55306.1| hypothetical protein SSUBM407_0473 [Streptococcus suis BM407]
          Length = 2281

 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 68/276 (24%), Gaps = 59/276 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 676 KEYSDMKQSSLTAYYTDPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAM 727

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ +             +G EL+  T A+                     I+   T+ 
Sbjct: 728 PKHLREKSE---------LYGVELDTITGAIAK----------HLHPTSHIEIKGFETV- 767

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   +SN PF              +      R+        +   +   +  
Sbjct: 768 --AFNDNSFDLVISNVPFA-------------NIRIADNRY--------NKPYMIHDYFV 804

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+        G        I + + E       V LP   F     
Sbjct: 805 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAG 859

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           T++ T +        +           +  +     
Sbjct: 860 TSVTTDMLFFQKHLDKGYVTDDLAFLGSVRYDKDSR 895


>gi|325495636|gb|EGC93500.1| DarB [Escherichia fergusonii ECD227]
          Length = 2221

 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 118/384 (30%), Gaps = 74/384 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 55  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 93

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 94  TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 142

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 143 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 183

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 184 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 238

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++ + L ++         ++               E      +   +
Sbjct: 239 RKHPAEMAEKIPLVDESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 285

Query: 472 TFGYR-RIKVLRPLRMSFILDKTG-LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPY 529
             G++ RI+V    ++     K   + R E+ I W  L+    S   D++     ++   
Sbjct: 286 EKGFQGRIEVRADGQIDNQALKAKLIHRFESRIDWSLLNMAEPSPTADVVDEGEMRLING 345

Query: 530 GWAESFVKESIKSNEAKTLKVKAS 553
            W +      I+++  K L +  +
Sbjct: 346 VWQKYAGGRWIEADAGKELNIDVA 369


>gi|256841200|ref|ZP_05546707.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737043|gb|EEU50370.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1235

 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 85/297 (28%), Gaps = 76/297 (25%)

Query: 20  EDLWGDFKHTDFGKVILPFTLLRRLEC-------------ALEPTRSAVRE-KYLAFGGS 65
           ++L+G  + + + + IL       L C               +  RS   + K + +   
Sbjct: 250 DNLFGKSEASVYYRAILQNLFFAMLNCPITKEGGTEFTERRFKDNRSQFDDNKLMRYRDE 309

Query: 66  NIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-------- 115
             D + F+++A     F N   +    L    T    + +       A+ I         
Sbjct: 310 FNDPDEFLRLANETVPFLNGGLFDC--LDEKRTGMYYDGFSERKESMAQLIVPDYLFFGE 367

Query: 116 ---EDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTVPDRV------MSNIYEHL 162
              ++ D S       K  +    +  I K ++            V      +  ++E+L
Sbjct: 368 EAGKNIDLSEFYGDANKKKVSARGIIDILKRYNFTVEENMPFDKDVSLDPELLGKVFENL 427

Query: 163 IRRFGSE----VSEGAEDFMTPRDVVHLAT-----------------------------A 189
           +  +  E      +    F TPR++V                                  
Sbjct: 428 LASYNPETQQTARKQTGSFYTPREIVQYMVDESLVTHLKRTVGNELESEYRKLLDYADNE 487

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILVP 242
           +LL     L          + DP CG+G    G L   ++ +      +     ++ 
Sbjct: 488 ILLTEQQKLAIMQSLYNCKILDPACGSGAFPVGVLQQMVHILKQIDPDNSRWKNMLL 544


>gi|163790375|ref|ZP_02184807.1| type I restriction-modification system methyltransferase subunit
           (putative) [Carnobacterium sp. AT7]
 gi|159874446|gb|EDP68518.1| type I restriction-modification system methyltransferase subunit
           (putative) [Carnobacterium sp. AT7]
          Length = 335

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 99/337 (29%), Gaps = 44/337 (13%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           SY+ + S+  + I  +      I       ++ K+ + +   E+  D +    +    + 
Sbjct: 27  SYLEALSETGENILVN-KIPHQIDGFPSDEIVGKLTQLY--KEVSIDNMESEDIRKAIQL 83

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +     +      MTP  +  +   L+                 L DP  G G  L+
Sbjct: 84  ALLKASKTDALQPNHQMTPDAIGFILNYLI-----EKLISGKLEKIRLLDPAVGMGNLLS 138

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK-NIQQGS 280
              N                   + +  E   +    +L+            K  +    
Sbjct: 139 TVYN---------------GLVSKNILVEAEGIDNDDLLLTLASVSTTMQRQKVTLTHQD 183

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            L             +S+ P G     +K +  K                 S    LF+ 
Sbjct: 184 ALQD--LLMDPVDVVVSDLPVGYYPLDEKVSKYKTAAKEGH----------SYAHHLFIE 231

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
              + L+      G   I L  + LF      G  ++   + E   ++ ++ LP +LF  
Sbjct: 232 QSLHYLKD-----GGFGIFLVPAQLFETDETPGLMKM---IQEESFLQGMLNLPNELFKT 283

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNE 437
            N    + ++  +    ++ K  L+     + + +  
Sbjct: 284 KNSRKSILLIQKKGNNAKQAKQVLLAQIPDFKNQKAM 320


>gi|308174631|ref|YP_003921336.1| nucleic acid methyltransferase [Bacillus amyloliquefaciens DSM 7]
 gi|307607495|emb|CBI43866.1| putative nucleic acid methyltransferase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328554557|gb|AEB25049.1| nucleic acid methyltransferase [Bacillus amyloliquefaciens TA208]
 gi|328912961|gb|AEB64557.1| putative nucleic acid methyltransferase [Bacillus amyloliquefaciens
           LL3]
          Length = 328

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 41/213 (19%), Positives = 73/213 (34%), Gaps = 36/213 (16%)

Query: 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
                  TL DP CGTG  L  A N ++D  +           G +++     +  A   
Sbjct: 113 TGSQKGLTLLDPACGTGNLLLTAANQLSDKAAKS--------FGIDIDDVLLKIAYAQAN 164

Query: 261 IRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           ++  E +             +L       ++    + + P G  +  D+ A   E K  E
Sbjct: 165 LQEKEMELFCQ--------DSLQP--LFIEQADAVICDLPVGY-YPNDEGAEAFELKADE 213

Query: 321 LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
              F            LF+       +     GG    ++ +  LF+        +++++
Sbjct: 214 GHSFAHH---------LFIEQSVKHTKP----GGYLFFMIPNH-LFDSAQS---DKLKQF 256

Query: 381 LLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           L E   I A++ LP  LF     A  + IL  +
Sbjct: 257 LAEKVYINALLQLPATLFKDEAQAKSILILQKK 289


>gi|315639417|ref|ZP_07894576.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315480480|gb|EFU71125.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 2533

 Score = 45.0 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 112/372 (30%), Gaps = 74/372 (19%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
           T  A+ E +  F    ++   F     + F       L  L   N +  ++  +  F + 
Sbjct: 575 THQALNEDFKDFL-EEVEPSEFKIFTQHQF-------LKKLDGENYKGKVDFKLT-FKER 625

Query: 111 AKAIFEDFDFSSTI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR--- 164
            +A +E    +  I    RL       ++   FSG         D       + L++   
Sbjct: 626 IRANYEALKLTQNIFHQNRLVATAKEQEVLAKFSGYGGLKALFYDDKYEKEKDELLKLVG 685

Query: 165 --RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
              F          F TP  +V+     LL         S      + +P+CG G F++ 
Sbjct: 686 VKYFKELRDSSVSAFYTPSFIVNAMYERLL-----KLGLSQNEKVKVLEPSCGVGIFMSL 740

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A                      E +  T  +      +              +   +  
Sbjct: 741 APE-------------NFEFEAVEKDSLTATIAK---FLH-----------PKVVIYNKG 773

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +++   K F   + NPP+ K+     D   K HK      F      I    +L     
Sbjct: 774 LEEVKFNKEFDLVIGNPPYAKE--SIYDVSSKGHKENVHNYFA-----IKCAELL----- 821

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                      G  + V+SS  L      S  ++ R  L +   +     L ++ F+ T 
Sbjct: 822 --------KENGLFSFVISSYFL-----DSQSAKHREILNDMGTLVDSYRLSSEAFYNTE 868

Query: 403 IATYLWILSNRK 414
           + + L   + RK
Sbjct: 869 VISDLIFYAKRK 880


>gi|319936976|ref|ZP_08011386.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
 gi|319807912|gb|EFW04491.1| superfamily II DNA and RNA helicase [Coprobacillus sp. 29_1]
          Length = 2439

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S        F TP +V+      +            G    L +P+CG G F+   
Sbjct: 926  EEYASARESTLTAFYTPPEVITAIYKAM-----EQMGFQEG---NLLEPSCGIGNFIGML 977

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             + + D             +G EL+  +  +     L ++     +     N+       
Sbjct: 978  PDTMQDSK----------IYGVELDTISAGIAQQ--LYQKTTIAAQGFEETNL------- 1018

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                    F   + N PFG     DK   + +    +                 F     
Sbjct: 1019 ----PDSFFDGVVGNVPFGDFKVSDKRYDKHKFLIHDY----------------FFAKSL 1058

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            +KL      GG  A+V S   +           +R+++ +   +   + LP + F     
Sbjct: 1059 DKLRP----GGVMALVTSKGTM-----DKETLAVRKYIAQRAELLGAIRLPNNTFKGNAG 1109

Query: 401  TNIATYLWILSNR 413
            T + + + IL  R
Sbjct: 1110 TEVVSDILILQKR 1122


>gi|295102472|emb|CBL00017.1| DNA methylase [Faecalibacterium prausnitzii L2-6]
          Length = 1989

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 97/342 (28%), Gaps = 77/342 (22%)

Query: 105 ASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-H 161
             ++ N +AI   F           E+  +L +        +    +  +         +
Sbjct: 387 QKYARNIEAIRTLFKLEQEHRGATAEEQQVLSQYVGWGGLSDAFDPSKDNWAKEYAELKN 446

Query: 162 LIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           L+    + +  S       T   V+      +        ++       + +P+ G G F
Sbjct: 447 LLSEDEYTAARSSTLNAHYTSPVVIRSIYEAV--------EKMGFKSGNILEPSMGVGNF 498

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSK 274
                + +AD             +G EL+  T  +       A + +   E+  R+D   
Sbjct: 499 FGMLPDTMAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRQDF-- 546

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                            +   + N PFG+ ++ +  A  K   N     F   +      
Sbjct: 547 -----------------YDLAIGNVPFGQ-YKVNDKAYNKLGFNIHNYFFAKAI------ 582

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
                             GG  A V            S +S  R+ + E   +   + LP
Sbjct: 583 -------------DQVRPGGVIAFVT-----SRYTMDSKDSTARKHMAECADLLGAIRLP 624

Query: 395 TDLF---FRTNIATYLWILSNRKT--EERRGKVQLINATDLW 431
            + F     T + + +  L  R    +     VQL    D +
Sbjct: 625 NNAFKANAGTEVVSDIIFLQKRDRPIDHEPDWVQLGKTEDGF 666


>gi|282858529|ref|ZP_06267701.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|282588714|gb|EFB93847.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
          Length = 1279

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 57/213 (26%), Gaps = 48/213 (22%)

Query: 151 PDRVMSNIYEHLIRRFGSE----VSEGAEDFMTPRDVVHLATA------LLLDPDDALFK 200
              ++  ++E+L+  F  E      +    F TPR++V           LL   +  +  
Sbjct: 400 DPELLGRVFENLLADFNEETHESARKSTGSFYTPREIVDYMVDESIKNYLLGKNNLDIDA 459

Query: 201 ESPGM------------------------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            S                              + DP CG+G F    ++ + +       
Sbjct: 460 NSLNELFVKKNIPTNWNTSTCNDVADALRNIKILDPACGSGAFPMGCLHQIVELQEILCK 519

Query: 237 PPILVP-----------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             I              +G +++P    +C     I  +      D +      +    +
Sbjct: 520 GKIDRYNLKLAIIENCVYGVDIQPIAMLICKLRFFISLICEQTNVDFNS---PETNFGIN 576

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                   +  +N          ++    + K 
Sbjct: 577 TLPNLETKFVAANSLISADIRSYENDWTADEKL 609


>gi|116492979|ref|YP_804714.1| adenine-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
 gi|116103129|gb|ABJ68272.1| Adenine-specific DNA methylase [Pediococcus pentosaceus ATCC 25745]
          Length = 334

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 95/293 (32%), Gaps = 46/293 (15%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192
           L KI + F   +  P+      +    + ++ R   E    A    TP  V  L   ++ 
Sbjct: 59  LKKIYEGFKYNDYSPE-----ELRKAIQLVMIRANKEERIQANHQFTPEAVGMLFNYIIE 113

Query: 193 DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
           +      +       T++DP  GTG  L+  +N+      + K        G + +    
Sbjct: 114 NLKVDSNQL------TIFDPAVGTGNLLSTILNYFQTKRINFKGI------GVDNDDTML 161

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           ++        RLE +               S D    K     +S+ P G          
Sbjct: 162 SIASMSFTFERLEVELFHQD----------SIDDLFVKNVDIAVSDLPVGY-------YP 204

Query: 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
             E   G   R   G       S +  + +   ++    GG    + L  S LF      
Sbjct: 205 IDERTKGFETRSKEGH------SFVHHLLIEQSMKTIRPGG--YGVFLVPSNLF---QTQ 253

Query: 373 GESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN-RKTEERRGKVQL 424
              ++  +  E   ++AI+ LPT +F        + IL     + ++  +V L
Sbjct: 254 EAKKLLSFFHEKVYLQAILNLPTKMFKDEQAQKSILILQKVGASAKQAEQVLL 306


>gi|322511144|gb|ADX06457.1| putative N-6 adenine specific DNA methylase [Organic Lake
           phycodnavirus 2]
          Length = 183

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 47/151 (31%), Gaps = 19/151 (12%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLD--PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH- 226
             E + +  TP  +++     L +    +           T YDP  G G F+       
Sbjct: 28  NKENSGEVFTPLSIINDMLDELDESYKKEHNKSIFTEKHLTWYDPCVGIGNFVFLVYTRL 87

Query: 227 -----VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                + +     K     + +  E+     ++          +         NI +G +
Sbjct: 88  MNGLPIKNKEQRKKHILEHMIYSSEVTHNNVSIYK--------QIFCGDKYKLNIYEGDS 139

Query: 282 LSKDL---FTGKRFHYCLSNPPFGKKWEKDK 309
           L  D    ++  +F   L NPP+     K K
Sbjct: 140 LMLDPQTFWSINKFDIILGNPPYNSNGTKHK 170


>gi|145301380|ref|YP_001144220.1| hypothetical protein ASA_P4G174 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142856157|gb|ABO92472.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 895

 Score = 45.0 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 58/199 (29%), Gaps = 49/199 (24%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL-----DPDDALFKESP 203
            +   +  ++++ +I     E         T    +      L         +   K + 
Sbjct: 279 DINPDIFGSMFQAVID---VEQRGNLGQHYTSYSNIMKVIQPLFLDSLRAELEKNRKSAN 335

Query: 204 GMIR--------TLYDPTCGTGGFLTDAMNHVA---------------DCGSHHKIPPIL 240
           G+ +         ++DP CG+G FL  A   +                  G       + 
Sbjct: 336 GLKKLLVRLGNIKVFDPACGSGNFLIIAYKELHTLERMVIQALQQLEPQQGFSMSSLHLD 395

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRD-------------LSKNIQQGSTLSKDLF 287
             +G E++     +    + +   + + + +              S NI  G +L  D  
Sbjct: 396 QFYGIEIDDFACEIARLALWLAEHQLNKQWEQTFGYAPPSLPLRSSGNIVSGDSLVLDWH 455

Query: 288 TG-----KRFHYCLSNPPF 301
                  +   Y + NPPF
Sbjct: 456 KVCPKGIEDEVYVIGNPPF 474


>gi|294775987|ref|ZP_06741483.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|294450125|gb|EFG18629.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 246

 Score = 45.0 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 20/121 (16%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             + ++   L  R G +       F TP  +  L              +     + + DP
Sbjct: 85  DALGDLSMALSSRKGQQA---QGQFFTPVHICDLMVMC-------TETDGKKTGQRINDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG+G  L     HV   G             +++      + +  MLI     +     
Sbjct: 135 TCGSGRLLLAY--HVRHLG--------NYLVAEDVNRTCCLMTICNMLIHGCVGEVIHHD 184

Query: 273 S 273
           S
Sbjct: 185 S 185


>gi|189461123|ref|ZP_03009908.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136]
 gi|189432213|gb|EDV01198.1| hypothetical protein BACCOP_01770 [Bacteroides coprocola DSM 17136]
          Length = 1658

 Score = 45.0 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 49/242 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          +     A FK++   + T  +P+ G GGFL  +M           
Sbjct: 98  AFYTP----KFLVDAVTRQIHATFKDNCLQMSTFLEPSAGIGGFLPVSMPGTRSYAFEKD 153

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294
                                    +  L      D +  +  G  T++      + F  
Sbjct: 154 ------------------------CLTGLILSLLYDEATTVTAGFETIADQHLEHESFDV 189

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             SN PFG     D +  +   K G   +    +      +  F+  +        N GG
Sbjct: 190 IASNIPFGNFRVFDAEMWK---KGGMYEQSAKTIH-----NYFFVKAM-----ELLNEGG 236

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411
             A V             G   +R +L+ +  +   + LP  LF +T+   + + L I  
Sbjct: 237 LLAFVAPRGIADT----PGNKFVREYLVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQ 292

Query: 412 NR 413
             
Sbjct: 293 KH 294


>gi|323126877|gb|ADX24174.1| type II restriction enzyme-methylase [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 982

 Score = 45.0 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 59/432 (13%), Positives = 125/432 (28%), Gaps = 81/432 (18%)

Query: 91  LGSTNTRNN--LESYIASFS---DNAKAIFEDFD-------FSSTIARLE-KAGLLYKIC 137
           L   N   N  L+SY+ + +      +    +F        F   +  L     +     
Sbjct: 247 LEDLNIETNGTLQSYLNTQNFWESFVRKTVSEFKLKYDGALFDIDLPNLALTNDVFVDFV 306

Query: 138 KNFSGI-ELHPDTVPDRVMSNIYEHLIRR--FGSEVS--------EGAEDFMTPRDVVHL 186
            + +G      D +    ++ IY+  + R  F  +                 TP ++   
Sbjct: 307 SSITGNSPYRFDVIKPSFIAEIYDQFLGRQLFVYDNKLQISNKPLSPDGAVPTPYEMSSY 366

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS-----------HHK 235
                    D +   +  +   + DP  G+G FL   +  + +                K
Sbjct: 367 ICKQ-TIQLDHISNINDLLKLKILDPCVGSGSFLLATLELLVEKYKTITNSERIALSDVK 425

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK---------NIQQGST----- 281
                  +G +++P    V    + ++ + S+                N + G+T     
Sbjct: 426 AIIKNCLYGVDIDPTALEVLKMTLSLKIVMSNFILPEPFSKILSAIDNNFKYGNTIVQED 485

Query: 282 ------------------LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                             L   +F    F Y ++NPP+  + +  K      H+  +   
Sbjct: 486 ALMLASEEFEQFPTKFEELFPIIFKEGGFDYVVTNPPY-VEPKHFKRKWPLTHRYLKN-- 542

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
               L    D SM F++ + + L+     G                      ++R +L  
Sbjct: 543 -KYNLSDKVDISMFFVLRINDLLKSDGKYGLVI--------QKRFFNTEYGRKVRNYLTT 593

Query: 384 NDLIEAIVALPTD-LFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442
             ++  I    ++ LF             + KT ++    Q+  A               
Sbjct: 594 QGVLHTIHDFESNYLFKDKTTYIACLFGGSSKTSKKLELSQIRYAKHEGKLNSTRTNLNE 653

Query: 443 IINDDQRRQILD 454
           +I  + R  +++
Sbjct: 654 VIMTETRSALIE 665


>gi|15896770|ref|NP_350119.1| site-specific modification DNA-methyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|15026627|gb|AAK81459.1|AE007849_13 Site-specific modification DNA-methyltransferase [Clostridium
           acetobutylicum ATCC 824]
 gi|325510941|gb|ADZ22577.1| Site-specific modification DNA-methyltransferase [Clostridium
           acetobutylicum EA 2018]
          Length = 571

 Score = 45.0 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 104/296 (35%), Gaps = 26/296 (8%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+R+  +E       + TP+D+       ++  ++         I  + +P+CG G FL 
Sbjct: 2   LLRKDATEE-RLTGRYFTPKDLASYIIDWVIQDNN---------INKILEPSCGNGVFLE 51

Query: 222 DAMNHVADCGSHH---KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                  + G +    +I   +          +          R L +D     +  +  
Sbjct: 52  CLGERRLEDGRNITAIEIDEDVSFEASMQIDNSLRFNNCYDYQRALRNDGDIVNNGIVII 111

Query: 279 GSTLSK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                K       G+RF   + NPP+ +   +     ++E ++  L R      K+ +  
Sbjct: 112 NDDFYKVYEQELQGQRFQAIVGNPPYIR--YQYLSEQQREEQSKILIRNNMRPNKLINAW 169

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           + F++  A  L    +G G+  +V+ +  L    A     ++RR+++       IV    
Sbjct: 170 VSFVVACAEIL----DGNGKMGLVIPAELLQVAYAE----DLRRFIMRTFQRITIVTFRE 221

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
            +F        L ++       R  +++++   D+     +        ND +  +
Sbjct: 222 LVFPNVQQEVVLLLVEKEILHTREHQLRIVEYQDINELTESNDLDEYPFNDVEINE 277


>gi|332878423|ref|ZP_08446145.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683643|gb|EGJ56518.1| N-6 DNA Methylase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 667

 Score = 45.0 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 95/332 (28%), Gaps = 57/332 (17%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            + FS        + D    +  E+  R   S  +     F TP+++     ++      
Sbjct: 67  LELFSMTVELHKLIRDNS-GSAMEY-KRYMDSLKASVLTAFYTPKEITDTLVSV------ 118

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
              K+       + +P+ G G F++    H             ++   ++       +  
Sbjct: 119 --LKDYGVTPSKVLEPSAGMGAFISSVKEH--------SPQADVMAFEKD-------LLT 161

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +L      D  R       +             F   +SN PFG+    D      + 
Sbjct: 162 GRLLSHLYPEDKIRVSGFEKIE-------KPFNGTFDLAISNVPFGEVAVFDPAFAMSDS 214

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
                       P           +   K       GG  A + S   + + R       
Sbjct: 215 ------------PTRKMAQKAVHNYFFLKGIDTVRDGGIVAFLTSQGVMNSPRNEP---- 258

Query: 377 IRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSNRKTEERRGKVQLINATDLWTS 433
           +R  +L+   + + + LP +LF     T + + L IL     +E      L     L+T 
Sbjct: 259 VRLEMLKEARLVSAIRLPNNLFTENANTEVGSDLIILQKDTRKEG-----LTEDEKLFTQ 313

Query: 434 IRNE-GKKRRIINDDQRRQILDIYVSRENGKF 464
                G        + + QI+      +   +
Sbjct: 314 TGTLHGVNTGRYFIEHQEQIVCTKSKLDTDPY 345


>gi|257438751|ref|ZP_05614506.1| methylase [Faecalibacterium prausnitzii A2-165]
 gi|257198788|gb|EEU97072.1| methylase [Faecalibacterium prausnitzii A2-165]
          Length = 801

 Score = 45.0 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 57/222 (25%), Gaps = 56/222 (25%)

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFK--- 200
            +   +   ++E  +               T  + +H     L   D       +     
Sbjct: 176 DISPTIFGAVFESTL---NPVTRRKGGMHYTSIENIHKVIDPLFLDDLKNEFAEILTIGV 232

Query: 201 -----------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------- 240
                      ++     T  DP CG+G FLT+    +    +                 
Sbjct: 233 QKQKKKKLEEFQNKLAGLTFLDPACGSGNFLTETYISLRRLENDILRELQNGQVIFGDTN 292

Query: 241 ---------VPHGQELEP-------ETHAVCVAGMLIRRLESDPRR------DLSKNIQQ 278
                      +G E+             +  + M+    +             + NI  
Sbjct: 293 WNPIKVSISQFYGIEINDFAGDVAKTALWIAESQMMKETEDVVLMHLDFLPLKSNVNIHI 352

Query: 279 GSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           G+ L  D     +  +  Y + NPPF  +  + KD     + 
Sbjct: 353 GNALQMDWASIISPSKLSYIMGNPPFVGQSVRTKDQAHDMND 394


>gi|163849724|ref|YP_001637767.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens PA1]
 gi|163661329|gb|ABY28696.1| putative type II DNA modification enzyme [Methylobacterium
           extorquens PA1]
          Length = 1322

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 46/216 (21%)

Query: 127 LEKAGLL---YKICKNFSGIELHPDTVPD---RVMSNIYEHLIRR------------FGS 168
           L    LL   Y++    +   + P    D     + ++YE L+              F  
Sbjct: 395 LSNRDLLKAIYRLAWLKTDDGVMPVNWRDMQTEELGSVYESLLELTPRISADGREMLFAE 454

Query: 169 ------EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG------MIRTLYDPTCGT 216
                    +    + TP  +V +     +DP                +   + DP CG+
Sbjct: 455 GLETRGNARKTTGSYYTPDSLVQVLLDTTIDPVMDQAVAGAADPVRALLGLRVIDPACGS 514

Query: 217 GGFLTDAMNH---------------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           G FL  A                          +       HG +  P    +    + I
Sbjct: 515 GHFLLAAARRLAARVARARNDGVASAEQYRDAVRDVVRQCIHGVDRNPMAVDLTKVALWI 574

Query: 262 RRLES-DPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
             +E   P   L  NI  G  L      G++    L
Sbjct: 575 ESIEPGKPLGFLDGNIVCGDALLGTFGYGEKLDAVL 610


>gi|16119916|ref|NP_396621.1| SNF2 family helicase [Agrobacterium tumefaciens str. C58]
 gi|15163586|gb|AAK91062.1| helicase, SNF2 family [Agrobacterium tumefaciens str. C58]
          Length = 1693

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 67/260 (25%), Gaps = 58/260 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  +V    +          +        +  P  GTG F     
Sbjct: 154 DYASLARCTQYAHFTPEFIVRAIWS--------ALQRLGWRGGRVLAPGIGTGLFPALMP 205

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             + D              G EL+P T  +                     I  G   ++
Sbjct: 206 EALRDLS---------HVTGVELDPVTARIVR------------LLQPRARILTGD-FAR 243

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + NPPF  +  +   A                          F+    +
Sbjct: 244 TELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY---------------FVARSID 287

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L+     G  AA V S     +G     +S  R  + +   + A + LP   F     T
Sbjct: 288 LLKP----GAFAAFVTS-----SGTMDKADSSAREHIAKTADLIAAIRLPEGSFRADAGT 338

Query: 402 NIATYLWILSNRKTEERRGK 421
           ++   +     RK  E  G 
Sbjct: 339 DVVVDILFFRKRKVAELEGD 358


>gi|306835080|ref|ZP_07468123.1| GcrY protein [Corynebacterium accolens ATCC 49726]
 gi|304569061|gb|EFM44583.1| GcrY protein [Corynebacterium accolens ATCC 49726]
          Length = 620

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 48/199 (24%), Gaps = 54/199 (27%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD----DALFKESPGMIRT-------------L 209
             E   G  +  T +  +      L   +          +P                   
Sbjct: 348 SKEARRGDGEHYTSKANIMKTIGPLFLDELRAEADKLVSTPSTSVAALERFRDSLSELIF 407

Query: 210 YDPTCGTGGFLTDAMNHVADCGSH--------------------HKIPPILVPHGQELEP 249
            DP CG+G FL  A   +    +                      +   I   +G EL  
Sbjct: 408 CDPACGSGNFLLLAYRELRRIETDVIVAIRQRRGETGMSLNIEWEQKLSIGQFYGFELNW 467

Query: 250 ETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDL----FTGKRF 292
               +    M +   +++     +              +I  G+ L+ D           
Sbjct: 468 WPAKIAETAMFLVDHQANKELANAVGRPPERLPIKITAHIVHGNALAVDWRNALPETVGQ 527

Query: 293 HYCLSNPPFGKKWEKDKDA 311
            Y   NPPF     K K  
Sbjct: 528 TYIFGNPPFIGHQTKSKQQ 546


>gi|288941148|ref|YP_003443388.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Allochromatium vinosum DSM 180]
 gi|288896520|gb|ADC62356.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Allochromatium vinosum DSM 180]
          Length = 310

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 25/159 (15%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +LI R  F        E  + PR  +     +  DP     +        + D   G+G 
Sbjct: 90  YLIGRAWFAGLEFRVDEQVLVPRSPIAELVEVGFDPWIDADRVG-----RVLDLCTGSGC 144

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
               A  ++ D                ++ PE   +    +    +           I +
Sbjct: 145 IGIAAAVYLPDADVDL----------VDISPEALVIARDNVERHGVGDRVH------IFE 188

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
               +      +R+   +SNPP+  + E +    E  ++
Sbjct: 189 SDLFA--ALGDQRYDVIVSNPPYVSRAEFEALPTEYHNE 225


>gi|227487648|ref|ZP_03917964.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
            ATCC 51867]
 gi|227092342|gb|EEI27654.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
            ATCC 51867]
          Length = 1071

 Score = 45.0 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 61/253 (24%), Gaps = 35/253 (13%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                D +  S    L+K    Y+        E+   +   +V+  +YE   ++     +E
Sbjct: 820  DALSDANLESETDGLQK---FYESV-RVRAAEVSSASGKQQVIKELYERFFQKAFKRDAE 875

Query: 173  GAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V        D   +   K        + DP  GT  F+   +       
Sbjct: 876  KLGIVYTPVEIVDFILRAANDVSLEHFGKGLSDEGVCILDPFAGTSTFMVRLLQSGLIKP 935

Query: 232  SHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                          E+              T+    A    R  +  P       I    
Sbjct: 936  DDMARKYAGELFATEIMLLAYYVSAVNIETTYNALRAEQAQRNGDPAPDYIPFDGIALAD 995

Query: 281  TL----------------SKDLFTGKR---FHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            T                 + D    ++    +  + NPP+        D           
Sbjct: 996  TFQIHEKGDTPDLGFFVDNNDRIERQKKARINVIVGNPPYSVGQTSANDNNANMKYKTLD 1055

Query: 322  GRFGPGLPKISDG 334
             R        S G
Sbjct: 1056 SRIAATYAAKSTG 1068


>gi|120434627|ref|YP_860317.1| hypothetical protein GFO_0260 [Gramella forsetii KT0803]
 gi|117576777|emb|CAL65246.1| conserved hypothetical protein-most likely a DNA methylase
           [Gramella forsetii KT0803]
          Length = 908

 Score = 45.0 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 70/295 (23%), Gaps = 67/295 (22%)

Query: 55  VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS--FSDNAK 112
           + ++YL       D        GY F          L + +   +   Y+    FS++ +
Sbjct: 204 IFQEYLDLHTKE-DGSDLAAQLGYIFQVLDTPREKRLKNIHEAADQFPYVNGQLFSESLR 262

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                FD             +  +  +   ++     +   +  ++++        +   
Sbjct: 263 --LPSFDSE-----------MRTMLLDACALDWG--KISPAIFGSMFQ---AAMNPDERR 304

Query: 173 GAEDFMTPRDVVHLATALLLDPD-------------DALFKESPGMIRTLYDPTCGTGGF 219
                 T    +      L   +                            DP CG G F
Sbjct: 305 DLGAHYTSEANIQKVIKPLFLDELRTEFKKVKSSSKKLKAFHDRISKLKFLDPACGCGNF 364

Query: 220 LTDAMNHVADCG-----------------SHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
           L      + +                          I   +G E +     +    M + 
Sbjct: 365 LIITYRELRELELDILRELNKTGQGFLNVGDIIKVDIDQFYGIEYDEFPARIAEVAMWLM 424

Query: 263 RLESDPRRDLSKN-------------IQQGSTLSKDLFTGKRF---HYCLSNPPF 301
             + + +                   I+  + L  D     +     + L NPPF
Sbjct: 425 DHQMNMKLSEEFGQYFVRLPLKKSVSIRNENALRLDWKELVKPSELDFILGNPPF 479


>gi|148259803|ref|YP_001233930.1| hypothetical protein Acry_0792 [Acidiphilium cryptum JF-5]
 gi|146401484|gb|ABQ30011.1| hypothetical protein Acry_0792 [Acidiphilium cryptum JF-5]
          Length = 573

 Score = 45.0 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 57/203 (28%), Gaps = 32/203 (15%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                + TP  +      +  +               + DP CG G FL+     +AD  
Sbjct: 96  SDFGAYYTPPALCDRLLDIATECGVD------WRTAHVLDPACGGGAFLSPVARRMADSL 149

Query: 232 SH-----HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG--STLSK 284
           S                G EL+P    +    + I  +    +         G   TL +
Sbjct: 150 SDCSAPIALKNIAHRLRGYELDPFAAWMSQVFLEITLMPLCRKAGARLKDVVGVCDTLER 209

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHL 342
           +   G  +   + NPP+G+                +  R   G       ++  LF    
Sbjct: 210 EP-DGSGYDLVIGNPPYGR-------ITLSPALREKYARSLYGH-----ANLYGLFTDVA 256

Query: 343 ANKLELPPNGGGRAAIVLSSSPL 365
                     GG  A V  +S L
Sbjct: 257 LRHTRP----GGVIAYVTPTSFL 275


>gi|325833145|ref|ZP_08165693.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
 gi|325485701|gb|EGC88168.1| helicase C-terminal domain protein [Eggerthella sp. HGA1]
          Length = 1860

 Score = 45.0 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 72/261 (27%), Gaps = 58/261 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R +          F TP +V                  +     ++ DP  GTG F   A
Sbjct: 114 REYAKARESTLTAFYTPPEVAKAIW--------DYLVMAGFAAGSVLDPAAGTGRF---A 162

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               A+     K+  +      EL+P +  +           + P   +     + +TL+
Sbjct: 163 DAMPAELAGRAKLTMV------ELDPVSALIAK--------HAHPGMAVQCKGYEATTLA 208

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D      F   ++N PFG+ +         E        F   L               
Sbjct: 209 DD-----SFDVAVTNVPFGQ-FSVYDRRHAGEGMLVHDYFFAKAL--------------- 247

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
                    GG  A + +S  L         S  RR L     +     LP   F     
Sbjct: 248 ----DHVRPGGLVAFITASGTL-----DKKTSAARRELATRAELVCAARLPDSTFQASAG 298

Query: 401 TNIATYLWILSNRKTEERRGK 421
           T + + + +L  R     +  
Sbjct: 299 TTVTSDVVVLKKRAERIPKED 319


>gi|146281056|ref|YP_001171209.1| hypothetical protein PST_0661 [Pseudomonas stutzeri A1501]
 gi|145569261|gb|ABP78367.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 801

 Score = 45.0 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 18/131 (13%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +         V+ + Y+ L+      + +   +F TP  +V +               S
Sbjct: 83  TDNLTVARSRDVLKHFYQDLV---PDALRKSLGEFYTPDWLVEVTL--------DKTGVS 131

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVC 255
               +   DPTCG+G FL   +  +                       G +L P      
Sbjct: 132 DWTDKRFLDPTCGSGSFLLATIKRIRQQAEAASWSQKATLEHITRSVWGFDLNPLAVQAA 191

Query: 256 VAGMLIRRLES 266
              +LI   + 
Sbjct: 192 RVNLLISITDL 202


>gi|282897280|ref|ZP_06305282.1| hypothetical protein CRD_02204 [Raphidiopsis brookii D9]
 gi|281197932|gb|EFA72826.1| hypothetical protein CRD_02204 [Raphidiopsis brookii D9]
          Length = 600

 Score = 45.0 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 82/310 (26%), Gaps = 46/310 (14%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
              E       +  LEK    YK  +  +    + +     ++  +Y+   R    ++ E
Sbjct: 164 DTLEKESLGKEVETLEK---FYKSVRERASGIDNAEGKQKIII-ELYDKFFRTAFPKLVE 219

Query: 173 GAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 TP +VV                         + DP  GTG F+   +       
Sbjct: 220 RLGIVYTPVEVVDFIIKSANFALHQEFGVGLTDEGVHILDPFTGTGTFMVRLLQSGLIKP 279

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESDPRRDLS--------KNIQQ 278
              K       H  E+    + +    +      +  ++ +     +          I  
Sbjct: 280 QDLKRKFSHELHCNEIVLLAYYIAAINIEESYHFLIGIQEESNSFSTRKGEYEPFNGIVL 339

Query: 279 GST---------LSKDLFTG----------KRFHYCLSNPPFGKKWEKDKDAVEK--EHK 317
             T         L +++F            +     + NPP+    + + D  +     K
Sbjct: 340 TDTFQMFENEGYLLENIFPENNQRVISQKQRDITVIIGNPPYSAGQKSENDGNKNLSYPK 399

Query: 318 NGELGRFGPGLPKI---SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE 374
             +  R            +      +             G    V + S L +  A    
Sbjct: 400 LDDKIRSTYAKYSSATLKNSLYDSYIRAIRWATDRIQEKGIVCFVTNGSFLDSNSADG-- 457

Query: 375 SEIRRWLLEN 384
             +R+ L+++
Sbjct: 458 --LRKCLVDD 465


>gi|256419630|ref|YP_003120283.1| hypothetical protein Cpin_0584 [Chitinophaga pinensis DSM 2588]
 gi|256034538|gb|ACU58082.1| hypothetical protein Cpin_0584 [Chitinophaga pinensis DSM 2588]
          Length = 826

 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 68/261 (26%), Gaps = 68/261 (26%)

Query: 118 FDFSSTIARLEK--AGLLYKIC-KNFSGIELHPDTVPDRVMSNIYEHLIR---------- 164
           F   + ++ L      LL  +  K+FS I+          +S  YE L+           
Sbjct: 72  FAQENLLSTLIDSVNPLLIHLVNKHFSEIDTTDVL--SLDISTFYETLLGIETGNENNLV 129

Query: 165 --RFGSEVSEGAEDFMTPRDVVHLATA---------------LLLDPDDALFKESPGMIR 207
               G         + TP ++    T                L                 
Sbjct: 130 EISTGKNYRNKLGSYYTPSELAKSITQKTIDTFFTSNFGINKLSTANHVDAAILKEISSI 189

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKI---PPILVPHGQELEPETH-------AVCVA 257
           +  D +CG G FL + + +     ++  +     + +                   V   
Sbjct: 190 SFVDFSCGGGNFLIEILKYFEQVANNLNVTAEEKLQILRSVAKNISAFDVDCLALEVAKL 249

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK--------------------------R 291
            +L+          +S+N   G+ L +  F                             +
Sbjct: 250 NLLLSTGLHHAYATVSENFIHGNFLLQSTFPIDEKKKIEIFSSGFIYHEALSIFKEKVSK 309

Query: 292 FHYCLSNPPFGKKWEKDKDAV 312
           +   L NPP+ K   ++K   
Sbjct: 310 YDVILGNPPWEKIRFEEKKFY 330


>gi|291551202|emb|CBL27464.1| DNA methylase [Ruminococcus torques L2-14]
          Length = 2439

 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 75/253 (29%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S        F TP +V+               ++       L +P+CG G F+   
Sbjct: 926  EEYASARESTLTAFYTPPEVITTIYK--------AMEQMGFKEGNLLEPSCGIGNFIGML 977

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             + + D             +G EL+  +  +     L ++     +     N+       
Sbjct: 978  PDSMQDSK----------IYGVELDTISAGIAQQ--LYQKTTIAAQGFEETNL------- 1018

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                    F   + N PFG     DK   + +    +                 F     
Sbjct: 1019 ----PDSFFDGVVGNVPFGDFKVSDKRYDKHKFLIHDY----------------FFAKSL 1058

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            +KL      GG  A V S   +           +R+++ +   +   + LP + F     
Sbjct: 1059 DKLRP----GGVMAFVTSKGTM-----DKETLAVRKYIAQRAELLGAIRLPNNTFKGNAG 1109

Query: 401  TNIATYLWILSNR 413
            T + + + IL  R
Sbjct: 1110 TEVVSDILILQKR 1122


>gi|291525613|emb|CBK91200.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2510

 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 51/407 (12%), Positives = 104/407 (25%), Gaps = 92/407 (22%)

Query: 40   LLRRLECALEPTRSAVREKYLAFGGSNIDL----------ESFVKVAGYSFYNTSEYSLS 89
            + +R     +  ++   E       +  +           +  V+      YN   + + 
Sbjct: 805  VYKRFFDIEDSVKANRLETRERAIANGWETKIDENGHVVSDDAVQKKHNFHYNL--WEME 862

Query: 90   TLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
              G+          I +         +  +  + +A  E+   L      F G       
Sbjct: 863  KGGAKTRYQWNMDAIRT--------LKQIESENRLATPEEQKTL----SKFVGWGGLSQA 910

Query: 150  VPDRVMSNIYEH-----LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
              +       E+     L+    + +  +     F T  ++     + L+        + 
Sbjct: 911  FDENNAGWSKEYAELKDLLSDEEYSAARATVNNAFYTSPEIAMCINSALV--------QF 962

Query: 203  PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                  + +P+ G G F                       +G EL+  +  +        
Sbjct: 963  GFRGGNVLEPSMGIGNFFGSM----------PAPMQRSKLYGVELDSISGRIAK------ 1006

Query: 263  RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                  +   + NI   +      +    F   + N PFG     D    +   +  +  
Sbjct: 1007 ------QLYQNANI-SITGFENTTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY- 1058

Query: 323  RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                                  K       GG  A++ +   L           IR++L 
Sbjct: 1059 -------------------FLAKALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLA 1094

Query: 383  ENDLIEAIVALPTDLF---FRTNIATYLWILSN--RKTEERRGKVQL 424
            E   +   V LP   F     T +   +  L    RK +     V L
Sbjct: 1095 ERAELVGAVRLPNTAFKDNAGTEVTADILFLQKRERKIDIEPDWVHL 1141


>gi|312601301|gb|ADQ90556.1| Putative uncharacterized protein [Mycoplasma hyopneumoniae 168]
          Length = 473

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 92/269 (34%), Gaps = 36/269 (13%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228
             +      TP  +V L        ++ L K        + D +CG G FL      +  
Sbjct: 6   SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58

Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                +      K       HG ++E +    A+  A ++++  + +         +  +
Sbjct: 59  AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL  + F G +  + + NPP+ +    + + + K      +G         +D  + F  
Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L             +S S  F  +AGS     R +L +N +I+++V      FF+
Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429
               T ++ +      +        N T+
Sbjct: 219 ATTYTTIFTIDKSARNQMVDYFNFDNKTN 247


>gi|269977129|ref|ZP_06184102.1| type III restriction enzyme, res subunit [Mobiluncus mulieris 28-1]
 gi|269934432|gb|EEZ90993.1| type III restriction enzyme, res subunit [Mobiluncus mulieris 28-1]
          Length = 1703

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 64/245 (26%), Gaps = 31/245 (12%)

Query: 108  SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165
            S   + I +    +       +   L K  +  +      D       +M  +Y+    +
Sbjct: 848  SHAMQGILDRLAENQVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 905

Query: 166  FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224
               ++ +      TP  VV        +     F +  G     + +P  GTG F+T  +
Sbjct: 906  AFPKLGDRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 965

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278
                      +          E+   ++ +    +      + R    D        I  
Sbjct: 966  QSELISPEQLEHKYRHEIFANEIVLLSYYIASINIEQVYREIRREQGIDEGYVEFPGITL 1025

Query: 279  GSTLS-----------KDLFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              T             +D     +             + NPP+    +K  D  +     
Sbjct: 1026 TDTFQLAEGQNQIPCIRDFQANLKRVQAQRAADIQVVVMNPPYSAGQKKANDNNQNLKYP 1085

Query: 319  GELGR 323
               GR
Sbjct: 1086 WLDGR 1090


>gi|34540632|ref|NP_905111.1| type IIS restriction endonuclease [Porphyromonas gingivalis W83]
 gi|34396946|gb|AAQ66010.1| type IIS restriction endonuclease, putative [Porphyromonas
           gingivalis W83]
          Length = 1132

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 67/246 (27%), Gaps = 61/246 (24%)

Query: 104 IASFSDN-AKAIFEDFDFSSTIARLEKAGL-------LYKICK--NFSGIELHPDTV--- 150
           +  FS N  +     F   +TI       L       L  I    NF+  E  P+     
Sbjct: 355 LDGFSRNDTRFANGRFKHRATIP----NNLFFAPERGLVSILSRYNFTIEENSPEEQQVA 410

Query: 151 -PDRVMSNIYEHLIRRFG----SEVSEGAEDFMTPRDVVHLATA---LLLDPDDALFKE- 201
               ++  ++E+L+  +           +  F TPR+VV+       +    D  L +  
Sbjct: 411 LDPELLGKVFENLLGAYNPETQETARNQSGSFYTPREVVNYMVDESLISYLGDSDLVRSL 470

Query: 202 -------------------SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV- 241
                              S      + DP CG+G F    +N + +             
Sbjct: 471 FRPDFVLQEDNKVQCEAIASKLKAVKILDPACGSGAFPMGLLNRMIELLERISPQEKSYD 530

Query: 242 ---------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                     +G +++     +      I  +    R +   N                 
Sbjct: 531 LKLFVIENCLYGSDIQSIAAQITKLRFFISLICDCERDETKPN------FGIPTLPNLET 584

Query: 293 HYCLSN 298
            +  +N
Sbjct: 585 KFVAAN 590


>gi|290890764|ref|ZP_06553831.1| hypothetical protein AWRIB429_1221 [Oenococcus oeni AWRIB429]
 gi|290479536|gb|EFD88193.1| hypothetical protein AWRIB429_1221 [Oenococcus oeni AWRIB429]
          Length = 1200

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 71/266 (26%), Gaps = 46/266 (17%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCG 215
             +Y+       SE ++      TP  +V      +    D    K        + DP  G
Sbjct: 843  TLYDKFFSTGFSETTQRLGIVFTPVQIVDFIIKSVDFALDKYFGKHLADENVHILDPFVG 902

Query: 216  TGGFLTDAMNHVADCGS-------HHKIPPILVPHGQELEPETHAVCVAGM--LIRRLES 266
            TG F+ + +N++A                     H  E+   ++ +    +  +   +  
Sbjct: 903  TGTFIAETLNYLATQMKAGKITLADITRKYTQELHANEIVLLSYYIAAINIEAVFDEING 962

Query: 267  DPRRDLSKNIQQGS---------TLSKDLFTGKR----------FHYCLSNPPFGKKWEK 307
              +      I             TL +DLF G                ++NPP+      
Sbjct: 963  PEKYIPFDGIVLTDTFESTEQTETLDQDLFGGNNERLKKQQEVPITAIIANPPYSVGQNN 1022

Query: 308  DKDAVEKEHKNGELGRFGPGLPKI---------SDGSMLFLMHLANKLELPPNGGGRAAI 358
              D  +  H      +    +            S G     +             G    
Sbjct: 1023 QNDNQQNVH----YSKLEAHIASTYVQNSQSGLSKGVYDSYIKAFRWATDRIGDKGVIGF 1078

Query: 359  VLSSSPLFNGRAGSGESEIRRWLLEN 384
            V + S L +G         R+ L + 
Sbjct: 1079 VTNGSFLDSGSTDG----FRKSLYDE 1100


>gi|261212130|ref|ZP_05926416.1| hypothetical protein VCJ_002402 [Vibrio sp. RC341]
 gi|260838738|gb|EEX65389.1| hypothetical protein VCJ_002402 [Vibrio sp. RC341]
          Length = 1066

 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 66/212 (31%), Gaps = 41/212 (19%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIA--------RLEKAGL-------LYKICKNFSGIE 144
           +E+YI         IFE    SS I         +L K  L       L +I    S   
Sbjct: 277 MEAYIER-----SEIFEQAGLSSFIEEVIFSWYIQLAKDNLSDKLLLALRQILSRLSLYR 331

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           L        ++ ++Y+ L+     ++ +   +F TP  +V      + D +         
Sbjct: 332 LDYLKKTRDILRDLYQGLV---PGKLRQSLGEFYTPDWLVDFTVDKVADEEI-------- 380

Query: 205 MIRTLYDPTCGTGGFLTDA-------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           + + + DPTCG+G FL             +    +           G +L P        
Sbjct: 381 VSKKILDPTCGSGAFLLAIIRKKRTQAELLNLNYNDTLKMLCDTVWGFDLNPLAVQTARV 440

Query: 258 GMLIRRLESD---PRRDLSKNIQQGSTLSKDL 286
             LI   +     P  ++   I     +    
Sbjct: 441 NFLIEIADLLEKCPGSEIEVPILLADAIYSPA 472


>gi|205374511|ref|ZP_03227307.1| hypothetical protein Bcoam_15611 [Bacillus coahuilensis m4-4]
          Length = 329

 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 122/385 (31%), Gaps = 66/385 (17%)

Query: 72  FVKVAGYSFYNTSEYSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKA 130
                   F+N  + +     +T  +  L+ +Y+ + ++  + +F+       +  L K 
Sbjct: 1   MKDFTVEGFFNVLDET-----ATIIKEELDITYLEALAETGENMFQGEVLQDDLHDLVKR 55

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
            L  +         +         +   Y+ +I +   E +      MTP  +  L T L
Sbjct: 56  KLSKQY------ESVQLSLTAKETIRKSYQLVILKGMKE-NVQPNHQMTPDSIGLLMTFL 108

Query: 191 L--LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248
           L     +            T+ DPT GTG  L   MN + +           + +G +++
Sbjct: 109 LEKFLHEKTEL--------TILDPTVGTGNLLVTIMNRLHET--------FSLGYGVDVD 152

Query: 249 PETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
                +    A +L          +    +    +L + LF           P      +
Sbjct: 153 DVLIRLAYVSANLL----------EQPIQLYNQDSL-EPLFVDPVDVVVSDLPVGYYPND 201

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           +   +   +   G            S    L +    N  +     GG    ++ +  LF
Sbjct: 202 ERAKSFALQANQGH-----------SYAHHLLIEQSINYTKP----GGYLFFLIPNG-LF 245

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLI 425
                   +++R +L +   I+ I+ LPT LF     A  + I+  +  +     +V L 
Sbjct: 246 ESEYA---ADLRSYLKDEAYIQGILQLPTSLFKNERNAKSILIIQKKSADVRAPKEVLLA 302

Query: 426 NATDL--WTSIRNEGKKRRIINDDQ 448
           +   +    ++     K      + 
Sbjct: 303 SLPKMSDMRAMETILNKINEWIKEN 327


>gi|306818935|ref|ZP_07452656.1| helicase domain protein [Mobiluncus mulieris ATCC 35239]
 gi|304648337|gb|EFM45641.1| helicase domain protein [Mobiluncus mulieris ATCC 35239]
          Length = 1116

 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 61/245 (24%), Gaps = 31/245 (12%)

Query: 108  SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165
            S   + I +    +       +   L K  +  +      D       +M  +Y+    +
Sbjct: 850  SHAMQGILDRLAENQVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 907

Query: 166  FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224
               ++ +      TP  VV        +     F +  G     + +P  GTG F+T  +
Sbjct: 908  AFPKLGDRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 967

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278
                      +          E+   ++ +    +      +      D        I  
Sbjct: 968  QSELISPEQLEHKYRHEIFANEIVLLSYYIASINIEQVYREIRLEQGIDEGYVEFPGITL 1027

Query: 279  GSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              T                             +    + NPP+    +K  D  +     
Sbjct: 1028 TDTFQLAERQNQIPCIGDFQANLERVQAQRAAKIQVVVMNPPYSAGQKKANDNNQNLKYP 1087

Query: 319  GELGR 323
               GR
Sbjct: 1088 WLDGR 1092


>gi|238029062|ref|YP_002913287.1| Eco57I restriction endonuclease [Burkholderia glumae BGR1]
 gi|237880639|gb|ACR32967.1| Eco57I restriction endonuclease [Burkholderia glumae BGR1]
          Length = 597

 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 79/265 (29%), Gaps = 48/265 (18%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A  + ++  +F      P      ++ +IY  ++    S +      + TP  +V     
Sbjct: 91  ADDIGRLVADF------PAEDAGYLIGSIYTVML---PSSLRSKMGAYYTPPPLVARLLD 141

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
            +      L +       T  DP CG G FL      +            L   G+ L+ 
Sbjct: 142 QIEAAGFDLARG------TAIDPACGGGAFLAPLALRMVAHDGGASPEWTLRRLGKRLKG 195

Query: 250 ---ETHAVCVAGMLIRRLESDPRRDLSKN-----IQQGSTLSKDLFTGKRFHYCLSNPPF 301
              +  A      ++      P    +K      +  G  L        +F   + NPP+
Sbjct: 196 LEIDRFA-AWMTTVLLEAAVLPLCVAAKRRLPDVVVVGDALRPRDH--GQFELVIGNPPY 252

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIV 359
           G+           E       R   G       ++  LF       ++      G  A +
Sbjct: 253 GR-------VTLDEPMRNHYARSLYGH-----ANLYGLFTDLALRLVKPA----GILAYL 296

Query: 360 LSSSPLFNGRAGSGESEIRRWLLEN 384
             +S L     G     +R+ L +N
Sbjct: 297 TPTSFL----GGQYFKALRQLLTDN 317


>gi|237716415|ref|ZP_04546896.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229444062|gb|EEO49853.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 1135

 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 83/311 (26%), Gaps = 62/311 (19%)

Query: 68  DLESFVKVAGYSFYNTSEYS-LSTLGSTNTRNNLESYIASFSDNA-KAIFEDFDFSSTIA 125
           + E     A   F N   +  L            + +   FS NA K+   +F + + + 
Sbjct: 158 EEEILTLFAHVPFLNGGLFECLDKPKDLYLNQEYDIFYDGFSRNATKSSNGNFKYRAFVP 217

Query: 126 RL------EKAGLLYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFG----SE 169
            +      E    L  + K  NF+  E  P          ++  ++E+L+  +       
Sbjct: 218 NILFFNDDEDQPGLINLLKQYNFTIEENSPTDAVISLDPELLGRVFENLLAAYNPETQES 277

Query: 170 VSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP--------------------- 203
             +    F TPR +V           LL        E                       
Sbjct: 278 ARKSTGSFYTPRPIVDYMVDEAIKSYLLGKRLDRISEEKLNALFKERTVSTDWTDSNKDA 337

Query: 204 ----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-----------HGQELE 248
                    + DP CG+G F    +  + D     K   +              +G +++
Sbjct: 338 IANALKQVKILDPACGSGAFPMGCLLRIVDIIELLKGDTVDRYQLKLTIIENCVYGVDIQ 397

Query: 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD 308
           P    +C     I  +      D S      +    +        +  +N          
Sbjct: 398 PIAMLICKLRFFISLICEQNDIDFSS---PETNFGINTLPNLETKFVAANTLISANIRNY 454

Query: 309 KDAVEKEHKNG 319
           +D    + K  
Sbjct: 455 EDDWTNDEKLD 465


>gi|331018142|gb|EGH98198.1| endonuclease-methyltransferase fusion protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 835

 Score = 44.6 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 58/431 (13%), Positives = 110/431 (25%), Gaps = 91/431 (21%)

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
              +  E    +     Y  S   L      +  +    Y+ + + + K++ +    S  
Sbjct: 218 KPELSEEELNDLTQN--YINSIVFLRVCEDRDLEDYETLYLLAKTKDFKSLIQKLKNSDK 275

Query: 124 -----------IARLEKA--GLLYKICKN--FSGIELHPDTVPDRVMSNIYEHLIR---R 165
                      I  L       ++ I +   F             ++ NIYE  +    R
Sbjct: 276 KYNSGLFALSYINTLINNADSCIWPIIEELYFPQSTYSFSVFSSEILGNIYEVFLSERIR 335

Query: 166 FGSEVSEGAE---------DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             ++     +            TP  +V                +   +     D  CG+
Sbjct: 336 INADGKIELQPKKDHIDRDVVTTPGHIVRDIIRNTAVEFCRSKTDKQILNSKFADIACGS 395

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV------CVAGMLIRRLESDPRR 270
           G FL +    + D    + I        Q+L P +  +       +    I  ++ D   
Sbjct: 396 GAFLLELFQALQDILIDYYIVHDKSKL-QQLTPHSFKLKLCVKKEILTKCIYGIDKDFNA 454

Query: 271 DLS-----------------------------KNIQQGSTL--------------SKDLF 287
             +                              NI  G++L                   
Sbjct: 455 VKACSFGLLLKLLEGESKDTIELNTSILPKIDNNILFGNSLIDSNDNIKTTDAIAVNPFN 514

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
              RF   + NPP+      +        +            K  D   LF+      L+
Sbjct: 515 IVHRFDVIIGNPPY---MATEHMKQLTPLELPIYKNKYKSAHKQFDKYFLFVERSMQLLK 571

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP-TDLFFRTNIATY 406
                 G    +L S     G        +R+ L E   +  +++   + +F      T 
Sbjct: 572 DE----GFLGYILPSKFTKVGAGQG----LRKLLTEQKYLSKLISFGASQVFKDKTTYTC 623

Query: 407 LWILSNRKTEE 417
           L  L   K  +
Sbjct: 624 LLFLKKSKQTK 634


>gi|325300601|ref|YP_004260518.1| helicase domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324320154|gb|ADY38045.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1671

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 51/268 (19%), Positives = 82/268 (30%), Gaps = 61/268 (22%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          + D   A F+ +  ++++  +P+ G GGFL  +M           
Sbjct: 101 AFYTP----KFLIEAVTDQIRATFQANGLLMKSFLEPSAGIGGFLPVSM----------- 145

Query: 236 IPPILVPHGQELEPETHAVC-VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                        P+T+ V     +    + S  + D    I    T+         F  
Sbjct: 146 -------------PDTYKVAFEKDLATGLVLSALQPDTKAVIGGFETIKAQELEYDTFDV 192

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD----GSMLFLMHLANKLELPP 350
             SN PFG     D D   +            G P         +  F+  +        
Sbjct: 193 IASNIPFGTINVFDADFERR------------GTPYKQSLKAIHNYFFIKAM-----ELL 235

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEI-RRWLLENDLIEAIVALPTDLFFRTN---IATY 406
           N GG  A +        G A S  +   R +L+ +  I   + LP  LF +T    + + 
Sbjct: 236 NEGGLLAFIT-----SRGVADSPSNRFVREYLVHHAHIITALRLPDTLFMQTGGIEVGSD 290

Query: 407 LWILSN--RKTEERRGKVQLINATDLWT 432
           L IL     K      +   +      T
Sbjct: 291 LIILQKDSHKQNLTTRERLFLETCRERT 318


>gi|317010727|gb|ADU84474.1| type II adenine specific methyltransferase [Helicobacter pylori
           SouthAfrica7]
          Length = 545

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LEILENSSDLENLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTSQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP  G+G F+  A+              +   +G + +    A+       +
Sbjct: 136 -----AFCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R++     D   NI Q   LS       +F    +NPP+GKK+ +++       K     
Sbjct: 177 RIKERYHLDC-PNIVQKDFLSLKHTP--QFDCIFTNPPWGKKYHQNQ-------KENFKQ 226

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           RF   L +  D + LF M   + L+   + G
Sbjct: 227 RFN--LSQSLDSASLFFMASLDCLKENAHLG 255


>gi|306833660|ref|ZP_07466787.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
 gi|304424430|gb|EFM27569.1| SNF2 family protein [Streptococcus bovis ATCC 700338]
          Length = 2274

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 78/309 (25%), Gaps = 62/309 (20%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 669 KEYSDMKQSSLTAYYTDPALIRQMW--------DKLERDGFTGGKILDPSMGTGNFFAAM 720

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + +             +G EL+  T A+                +    I+   T+ 
Sbjct: 721 PKQLREKSE---------LYGVELDTITGAIAK----------HLHPNSHIEIKGFETV- 760

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   +SN PF              +      R+        D   +   +  
Sbjct: 761 --AFNDNSFDLVISNVPFA-------------NIRIADNRY--------DKPYMIHDYFV 797

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+        G        I + + E       V LP   F     
Sbjct: 798 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTEFLGGVRLPDSAFKAIAG 852

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIY--VS 458
           T + T +        +         + +  +             + +   Q+L  Y   +
Sbjct: 853 TTVTTDMLFFQKHLNKGYVADDLAFSGSIRYDKDSRIWLNP-YFDGEYNSQVLGTYEVRN 911

Query: 459 RENGKFSRM 467
              G FS  
Sbjct: 912 FNGGTFSVK 920


>gi|227549090|ref|ZP_03979139.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum DSM
            44291]
 gi|227078819|gb|EEI16782.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum DSM
            44291]
          Length = 1655

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 66/287 (22%), Gaps = 40/287 (13%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                +    +   +L+K    Y+         +   +   +V+  +YE   R+   + +E
Sbjct: 821  DAMANNHLDAETEKLDK---FYESV-RMRAAAVTSASGKQQVIKELYERFFRKAFKKQAE 876

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V        D     F          + DP  GT  F+   +       
Sbjct: 877  SLGIVYTPVEIVDFILRATDDLSRKHFGRGLSDEGVCILDPFAGTSTFMVRLLQSGLIKP 936

Query: 232  SHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                          E+              T+    A    R     P      NI    
Sbjct: 937  EDIARKYANELFATEIMLLAYYVSAVNIETTYNALRAEEAQRNGLPTPEYVPFNNIALAD 996

Query: 281  TL--SKDL-----------------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            T    +D                        +  + NPP+        D           
Sbjct: 997  TFQIHEDGDIPDLEIFRDNNATIERQKNAPINVVIGNPPYSAGQRSANDLNANLKYPSLD 1056

Query: 322  GRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSS 363
             R        S   + + L+   +             G  A V +  
Sbjct: 1057 KRIAETYAAKSRATNKNSLYDSYLRAFRWATDRIGDQGVVAFVSNGG 1103


>gi|282900075|ref|ZP_06308032.1| hypothetical protein CRC_01466 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194957|gb|EFA69897.1| hypothetical protein CRC_01466 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 717

 Score = 44.6 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 66/296 (22%), Gaps = 73/296 (24%)

Query: 55  VREKYLAFGGSNIDLESFVKVAG-YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
             E Y       +      +  G    +     +           N    I   S     
Sbjct: 339 YLEYYSIERLRELAERPRYRREGFQDIWQGLRVTFKLFD-----ENWRGQILGLSPLNGD 393

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIEL-------HPDTVPDRVMSNIYEHL---- 162
           +F     +           L    +  S  E        +   +    + ++YE L    
Sbjct: 394 LFGSQTLTDLDDCGIDNYDLLTAIRCLSLYEDKGQLRRVNYAALDVEELGSVYESLLDFH 453

Query: 163 --------IRRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPG------- 204
                   I  F        +    + TP  +V       L+P                 
Sbjct: 454 PQVNNSQGIYEFNLIFGTDRKTTGSYYTPPQLVQQLIKTALEPVIEEKLRESNNRELRVG 513

Query: 205 ---------------------MIRTLYDPTCGTGGFLTDAMNHV---------------- 227
                                +   + DP CG+G FL  A   +                
Sbjct: 514 SRESGNNTNYELRITNYELSLLSIKVIDPACGSGHFLLAAARRIGKELAKVRTGESQPAP 573

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282
                  +       +G +L P    +C   + I       P   L   I+ G++L
Sbjct: 574 EPLRIAIRDVIQNCIYGVDLNPLAVDLCKVALWIEGFATGKPLNFLDHRIKCGNSL 629


>gi|325268850|ref|ZP_08135475.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           multiformis DSM 16608]
 gi|324988822|gb|EGC20780.1| site-specific DNA-methyltransferase (adenine-specific) [Prevotella
           multiformis DSM 16608]
          Length = 489

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 47/300 (15%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +        +    F T   +     ++     +            L D   G+G    
Sbjct: 16  FVSSNAKAGRKQYGQFFTSESIAVFMASMFHIDLE-------KDSLRLLDAGAGSGILSV 68

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             ++ + + G    +  +   + +++           +L + L S      +  I+  + 
Sbjct: 69  ALLSRIREIGYTGSVKLVCYENDEKVLG---------VLAKNLTSVKDSHFTFEIRHENY 119

Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++   F           G+ +   + NPP+ K  +   DA+  +           G P  
Sbjct: 120 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHMKEVC-------YGAP-- 170

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-- 389
            +   LF     + L    N GG    V+  S  +   A    +  R++LL +  I    
Sbjct: 171 -NLYFLFWAMGIHNL----NEGGELVYVIPRS--WTSGAY--FARFRKYLLSHCAITDIH 221

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQ 448
           I      +F    +     I+  RK   R  K+++ ++ T  +  +R        +  D 
Sbjct: 222 IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIRISSSDTSDFLDLRRFDVDYNTVVADN 281


>gi|86605042|ref|YP_473805.1| hypothetical protein CYA_0321 [Synechococcus sp. JA-3-3Ab]
 gi|86553584|gb|ABC98542.1| conserved hypothetical protein [Synechococcus sp. JA-3-3Ab]
          Length = 1525

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 42/171 (24%)

Query: 154 VMSNIYEHLIRR-----FGSEVS-----------EGAEDFMTPRDVVHLATALLLDP-DD 196
            + ++YE L+       F ++ +           +    + TP D+V       L+P   
Sbjct: 412 ELGSVYESLLDYRPQILFTAQATPQFELSYGSERKSTGSYYTPPDLVAELVRSALEPVLQ 471

Query: 197 ALFKESPGMIRT--------LYDPTCGTGGFLTDAMNHV----------------ADCGS 232
              K +              + DP CG+G FL  A   +                     
Sbjct: 472 ERLKSAASREEKERAILSLRVLDPACGSGHFLLAAARRLGKELAKVRTGEEEPAPETVRE 531

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282
             +       +G +  P    +C   + +       P   L   I+ G +L
Sbjct: 532 AIRDVVAHCIYGVDKNPLAVELCRVALWLEAHCAGKPLTFLDHRIKCGDSL 582


>gi|325288126|ref|YP_004263916.1| type I restrictioN-modification system, M subunit [Cellulophaga
          lytica DSM 7489]
 gi|324323580|gb|ADY31045.1| type I restrictioN-modification system, M subunit [Cellulophaga
          lytica DSM 7489]
          Length = 37

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLR 42
          MT      A L + IWK A ++ G     DF        +L+
Sbjct: 1  MTSNNQ-RAELQSQIWKIANEVRGSVDGWDFKH----LIILK 37


>gi|251771370|gb|EES51950.1| type III restriction enzyme, res subunit [Leptospirillum
            ferrodiazotrophum]
          Length = 1628

 Score = 44.6 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 68/263 (25%), Gaps = 30/263 (11%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMI 206
            D     V+ N+Y+   +    ++++      TP +VV                       
Sbjct: 842  DKSRQDVIRNLYDTFFQAAFPKLADRLGIVYTPVEVVDFIIKSADFALRKEFGVGLSDPG 901

Query: 207  RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
              + DP  GTG FL+  +                  H  EL    + +    +    L++
Sbjct: 902  VNILDPFAGTGTFLSRLIQSGIISPDRLPDKYREELHATELVLLAYYIASLNIESAFLQA 961

Query: 267  DPRRDLSKNIQQGSTL--------------------SKDLFTGKRFHYCLSNPPF--GKK 304
                     +  G T                       D          L NPP+   + 
Sbjct: 962  SGESLPFPGMVLGDTFQMGEGGKSKMFPKFLEENNARADRQNQADIRVILGNPPYRANQG 1021

Query: 305  WEKDKDAVEKEHKNGELGRFGPGLPKIS-DGSMLFLMHL--ANKLELPPNGGGRAAIVLS 361
                 +      K  +  R        + + + L+  ++             G    V +
Sbjct: 1022 DSNQNNQNLSYEKLDKSIRDTYAAGSTAVNKNSLYDSYIRAFRWASNRIRKQGVICYVTN 1081

Query: 362  SSPLFNGRAGSGESEIRRWLLEN 384
               + +G    G    R+ L E 
Sbjct: 1082 GGWI-DGNTTDG---FRKILAEE 1100


>gi|260905073|ref|ZP_05913395.1| hypothetical protein BlinB_07059 [Brevibacterium linens BL2]
          Length = 1586

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 62/229 (27%), Gaps = 24/229 (10%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGFL 220
            + R      + +  + TP  +     +  L        +    +  T+ +P  G+G F 
Sbjct: 535 FVFRLSGRDRQQSASYYTPEVLTRFTVSQALAELLTEDMRADDILSLTVCEPALGSGAFA 594

Query: 221 TD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            +     A  ++                 QEL+     + +    +  ++ +        
Sbjct: 595 LEAVNQLAAEYLRRKQEEVGDRIDPAVFQQELQKVKAYIALHN--VYGVDLNSTAVELAE 652

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-----HKNGELGRFGPGLPK 330
           I    +L  D          LS P FG +  +    +            +   +    P+
Sbjct: 653 I----SLWLD-----TMVAGLSAPWFGLRLRRGNSLIGARRSVYSRSTVKDKTWLKSTPE 703

Query: 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            S         +   L     G G AA       L    A +     R+
Sbjct: 704 KSTADARDPQSIYQFLLPA-EGWGAAADAKEGKKLAP-DAVTRLKNWRK 750


>gi|315641008|ref|ZP_07896094.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
 gi|315483232|gb|EFU73742.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
          Length = 1002

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 11/192 (5%)

Query: 108 SDNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
           S+    I E+   F       ++    Y   K  +    + +     ++  +Y+    + 
Sbjct: 796 SEAMDKIVEELSKFGGFNKEQDELKEFYDSVKLRAEGIDNAEAKQRIII-TLYDKFFSKG 854

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMN 225
             E ++      TP +VV      + D     F K        + DP  GTG F+   ++
Sbjct: 855 FKETTQRLGIVFTPVEVVDFIVKSVDDVLKKHFGKAIEDEGVHILDPFTGTGTFIVRTLH 914

Query: 226 HVADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQ 277
           ++ D  S+ +              H  E+   ++ +    +     E +       + I 
Sbjct: 915 YLKDKLSNGEITLADVTRKYTQELHANEIVLLSYYIAAINIESTFAEINHEEYKPFEGIV 974

Query: 278 QGSTLSKDLFTG 289
              T        
Sbjct: 975 LTDTFESTEQED 986


>gi|295086872|emb|CBK68395.1| Helicase conserved C-terminal domain./SNF2 family N-terminal
           domain./N-6 DNA Methylase. [Bacteroides xylanisolvens
           XB1A]
          Length = 1947

 Score = 44.6 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 80/265 (30%), Gaps = 55/265 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++      D    +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILGYLHPDQKVRVQGFEKIEKPF--TDYFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +SN PFG     D    + E    +   R        +  +  FL     K       GG
Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSQDPARRSA---PKAIHNYFFL-----KSLDAVREGG 240

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILS 411
             A + S   L         + IR +++ N  +  +  LP +LF     T + + L IL 
Sbjct: 241 IVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLIILQ 296

Query: 412 NRKTEERRGKVQLINATDLWTSIRN 436
               ++R     L +  +L+     
Sbjct: 297 KNSGKKRE----LYDYEELFVQTEK 317


>gi|307700715|ref|ZP_07637740.1| helicase C-terminal domain protein [Mobiluncus mulieris FB024-16]
 gi|307613710|gb|EFN92954.1| helicase C-terminal domain protein [Mobiluncus mulieris FB024-16]
          Length = 1487

 Score = 44.6 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 74/310 (23%), Gaps = 36/310 (11%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165
           S   + I +    +       +   L K  +  +      D       +M  +Y+    +
Sbjct: 639 SHAMQGILDRLAENRVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 696

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224
              ++        TP  VV        +     F +  G     + +P  GTG F+T  +
Sbjct: 697 AFPKLGNRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 756

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278
                                E+   ++ +    +      + R    D        I  
Sbjct: 757 QSGLISPEQLDHKYRHEIFANEIVLLSYYIASINIEQVYREIRREQGIDEGYVEFPGITL 816

Query: 279 GSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
             T                                  + NPP+    +   D  +  +  
Sbjct: 817 TDTFQLAERQNQIPCIGDFQANLERVQAQRAADIQVVVMNPPYSAGQDSANDNNQNLNYP 876

Query: 319 GELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
              GR        S   + + L+                 G  A V +SS +    A   
Sbjct: 877 SLDGRIADTYAARSSATNKNSLYDSYYRALRWASDRIKDEGIIAFVSNSSFIDGNTADGV 936

Query: 374 ESEIRRWLLE 383
                +   E
Sbjct: 937 RLTWAKEFSE 946


>gi|291536942|emb|CBL10054.1| Site-specific DNA methylase [Roseburia intestinalis M50/1]
          Length = 840

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 118/397 (29%), Gaps = 70/397 (17%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSG 142
             S+     TN    +   I +F +  +  F     + TI   +LE A  L K  +N   
Sbjct: 365 RQSIGEAVPTNVFFQIAENIKNFME--QEHFTTAIINKTIENYKLEDAENLIKFIQN--- 419

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
                       + N     I    +   E    + T           +L+         
Sbjct: 420 --------NPLNLGNASLARIAELTNSKRENNAAYYT--------NKFILNEIFKELPSI 463

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
              + T+ +P+ G G FL      +       K   I V        E   + +A     
Sbjct: 464 EKDVITILEPSVGIGNFL----PFIFKKYEETKEVNIDVVDIDGRNLEILRLLLA----- 514

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEHKNGEL 321
             +     ++  N  Q  TL  D    K +   + NPPF K K +     ++        
Sbjct: 515 --KQKIPSNMKLNFIQADTLLYDF--NKHYDLVIGNPPFSKLKSKDAAKYLKNNINKETT 570

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             F             F +  A  L           ++   + L             R L
Sbjct: 571 NTFE------------FFLEKAMTLSDY------VVMITPKAVLNTPEFRKT-----RDL 607

Query: 382 LENDLIEAIVALPTDLFFRTNIAT-YLWILSNRKTEERRGKVQLINATDLWTSIRNEGKK 440
           L    I+ I     + F    + T  L++ +N K  E + +          T  +   +K
Sbjct: 608 LATKKIDCIQDYGENGFKGVLVETICLFVGTNEKPNETKVESL--------TLKKTVVQK 659

Query: 441 RRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRR 477
           ++ I D +    + IY +      S+ LD+  F   R
Sbjct: 660 QKYITDKEYPYWI-IYRNDFFDGISQRLDFDKFTVFR 695


>gi|240142519|ref|YP_002967030.1| hypothetical protein MexAM1_META2p0852 [Methylobacterium extorquens
           AM1]
 gi|240012464|gb|ACS43689.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 468

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/209 (20%), Positives = 63/209 (30%), Gaps = 31/209 (14%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            T   VV      +  PD             L DP+ G G FL  A+  +A         
Sbjct: 26  YTSVPVVEALLDRMGWPDADG---------RLLDPSSGDGSFLVSALRRIATPAGDFDAL 76

Query: 238 PI---LVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
                   H Q +E     +    +LI R          ++ +        D      F 
Sbjct: 77  ARVQGWEMHPQAVEQARERI--VDLLISRGWNEHEALRGAEAVAHEGDFLTDN-PQGTFR 133

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPPN 351
           +   NPP+ +       +V KE        + P LP  + G +L  FL    + +     
Sbjct: 134 FVAGNPPYLR--WGHLPSVLKET-------WSPVLPSFARGDLLHAFLDRSVSIM----P 180

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRW 380
             G   +V S   LFN         I R 
Sbjct: 181 EDGVIGLVTSDRWLFNATTTGLRRTIGRK 209


>gi|229037726|ref|ZP_04189561.1| Restriction-modification system LlaBIII [Bacillus cereus AH1271]
 gi|228727580|gb|EEL78721.1| Restriction-modification system LlaBIII [Bacillus cereus AH1271]
          Length = 1571

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 66/236 (27%), Gaps = 34/236 (14%)

Query: 109  DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +N     E   F+     LE    LY+  K  +      +     ++  +Y+        
Sbjct: 805  ENIVKELEKAGFAKEQENLEP---LYESVKMRAEGVEKSEDKQKIII-TLYDKFFSTAFK 860

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHV 227
              +E      TP +VV      + D     F K        + DP  GTG F+   + ++
Sbjct: 861  STTERLGIVFTPIEVVDFIVKSVDDVLKKHFGKSLASEGVHILDPFTGTGTFIVRTLTYL 920

Query: 228  ADCGSHHK-------IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQ 277
             +     +              H  E+   ++ +    +     E +         + I 
Sbjct: 921  KEQMDKGEITLADIARKFTQELHANEIVLLSYYIAAINIESTFDEINGDEQGYVPFEGIV 980

Query: 278  QGSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEK 314
               T     ++D      F                  + NPP+  +   +    + 
Sbjct: 981  LTDTFESTENEDTLDDAYFGTNDERLKRQQELPITAIIGNPPYSGRDSDENSFSDA 1036


>gi|160887401|ref|ZP_02068404.1| hypothetical protein BACOVA_05420 [Bacteroides ovatus ATCC 8483]
 gi|156107812|gb|EDO09557.1| hypothetical protein BACOVA_05420 [Bacteroides ovatus ATCC 8483]
          Length = 1125

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 47/201 (23%)

Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189
           NF+  E  P+         ++  ++E+L+  +  E  E     +  F TPR++V+     
Sbjct: 406 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 465

Query: 190 -------------LLLDPDDALFKESPG---------MIRTLYDPTCGTGGFLTDAMNHV 227
                         L +PD  L +E P              + DP CG+G F    +N +
Sbjct: 466 SLITYLGDTQFVRSLFNPDFTLDREKPEEYQRVAKRLKAIKILDPACGSGAFPMGLLNRM 525

Query: 228 ADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            D          +            +G +++     +      I  +    +     N  
Sbjct: 526 IDVLCRISPNEKVYDLKLAIIENCIYGSDIQSIAAQITKLRFFISLICDCEKDASKPN-- 583

Query: 278 QGSTLSKDLFTGKRFHYCLSN 298
                           +  +N
Sbjct: 584 ----FGIPTLPNLETKFVAAN 600


>gi|119715823|ref|YP_922788.1| type II restriction-modification system modification subunit
           [Nocardioides sp. JS614]
 gi|119536484|gb|ABL81101.1| type II restriction-modification system modification subunit
           [Nocardioides sp. JS614]
          Length = 221

 Score = 44.6 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 30/138 (21%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI-RTLYDPTCGTGGFLTDA------- 223
           +   + +TPR +V     L+        +  P  + +T  +P  G G FL          
Sbjct: 20  KTYGEVLTPRHMVDRMLDLV----RDELEAGPDFVDKTFLEPAAGDGNFLVAILHRKLRA 75

Query: 224 --MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML---IRRLESDPRRDLSK---- 274
               +  +      +  +   +G EL  + H    A ML   +   +             
Sbjct: 76  VQQRYPHEEWPEASLFALASIYGIELLEDNHRDAKAVMLAEFLHFHDEHEIPCGPDTEQR 135

Query: 275 ---------NIQQGSTLS 283
                    NI +G T++
Sbjct: 136 QAATFLIDTNIVRGDTIT 153


>gi|238063211|ref|ZP_04607920.1| DNA methylase [Micromonospora sp. ATCC 39149]
 gi|237885022|gb|EEP73850.1| DNA methylase [Micromonospora sp. ATCC 39149]
          Length = 1188

 Score = 44.6 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 65/203 (32%), Gaps = 30/203 (14%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
           + +  R + ++Y+ L     +   +      TP  V         +P    F        
Sbjct: 189 EDLDTRFLGDLYQDL----SAHAKKTYALLQTPDFVEEFILDRTFEPAVKEFGL---PDT 241

Query: 208 TLYDPTCGTGGFLTDAMNHV------ADCGSHHKIPPILVP---HGQELEPETHAVCVAG 258
           ++ DPTCG+G FL  A   +       +     ++          G ++ P   A+    
Sbjct: 242 SVIDPTCGSGHFLLGAFGRLVKLWRKREPAGDIRVLVERALGQVTGVDINPFAVAIARFR 301

Query: 259 MLIRRLE------SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312
           +L+  ++       +        +  G +L +    G++  +      +GK       A 
Sbjct: 302 LLVAAMKECGLTSLERTPAWPVRVATGDSLLR---WGRKSSHQGDLLEYGKGESGFAYAT 358

Query: 313 EKEHKNGELGRFG-----PGLPK 330
           E     G+  R G      G P 
Sbjct: 359 EDADVLGKYLREGQYTVVVGNPP 381


>gi|168178693|ref|ZP_02613357.1| restriction endonuclease family protein [Clostridium botulinum NCTC
           2916]
 gi|226948533|ref|YP_002803624.1| restriction endonuclease family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|182671306|gb|EDT83280.1| restriction endonuclease family protein [Clostridium botulinum NCTC
           2916]
 gi|226841692|gb|ACO84358.1| restriction endonuclease family protein [Clostridium botulinum A2
           str. Kyoto]
          Length = 741

 Score = 44.6 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 19/158 (12%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135
             F N  +  L ++   N +     YI     +     +  DF      L       L K
Sbjct: 92  LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +G +    +     +  IYE +I     E  +    F TP  ++      +    
Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F         L D + G G F+  A + +    + 
Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE 232


>gi|154243764|ref|YP_001409337.1| DEAD-like helicase [Xanthobacter autotrophicus Py2]
 gi|154162886|gb|ABS70101.1| DEAD-like helicase [Xanthobacter autotrophicus Py2]
          Length = 1417

 Score = 44.6 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 77/269 (28%), Gaps = 58/269 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP  +V            A  +        + +P  GTG F       + D      
Sbjct: 169 AHFTPEFIVRAVW--------AGLRRLGWRGGRVLEPGIGTGLFPALMPESLRD------ 214

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              +    G EL+P T  +                     I  G   ++       F   
Sbjct: 215 ---VSHVTGIELDPVTARIVR------------LLQPRARIIAGD-FARTELPAN-FDLA 257

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPPF  +  +   A                          F++   + L+     G  
Sbjct: 258 IGNPPFSDRTVRSDRAYRSMGLRLHDY---------------FIVRAIDLLKP----GAL 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
           AA V S+  +        +   R  + ++  +   + LP   F     T++   L     
Sbjct: 299 AAFVTSAGTM-----DKADGSAREHIAKSADLVGAIRLPEGSFRASAGTDVVVDLLFFRK 353

Query: 413 RKTEERRGKVQLINATDLWTSIRNEGKKR 441
           RK  +  G +  ++  ++  +  +EG  R
Sbjct: 354 RKIGDAEGDLAWLDLDEVRPATEDEGPIR 382


>gi|300744060|ref|ZP_07073079.1| methylase [Rothia dentocariosa M567]
 gi|300379785|gb|EFJ76349.1| methylase [Rothia dentocariosa M567]
          Length = 762

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 38/154 (24%), Gaps = 37/154 (24%)

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--- 241
            L         D     +        DP CG G FL      + +  +   +        
Sbjct: 186 RLIRNKTTSLKDFDNFLNDLSTHVFCDPACGGGNFLNLTYAKLREIETDVLVEKRNRGGE 245

Query: 242 -----------------PHGQELEPETHAVCVAGMLIRRLESDPRR-------------D 271
                             +G E+      +    M +   +++                +
Sbjct: 246 FTASLDISIDQRLSINQFYGFEINWWAAKIAETAMFLVDHQANLHLAQALGDAPNRLPIE 305

Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPF 301
           ++ +I   + L  D        K   Y   NPPF
Sbjct: 306 IAAHIIHDNALRLDWKKAIPEPKGKTYIFGNPPF 339


>gi|121583280|ref|YP_973716.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
 gi|120596538|gb|ABM39974.1| N-6 DNA methylase [Polaromonas naphthalenivorans CJ2]
          Length = 584

 Score = 44.6 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 33/256 (12%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           G +       + TP  +           DD + + +       +DP CG   FL      
Sbjct: 92  GEKRRTEQALYFTPPKLADRVI------DDLVQRGASLTTVHWHDPACGGAAFLVPTAQR 145

Query: 227 VADC-------GSHHKIPPILVPHGQELEPETHAVCV--AGMLIRRLESDPRRDLSKNIQ 277
           +A                      G +L+    ++      M +       +R    +++
Sbjct: 146 MAQALAGLGLASGEVLKRIERQLSGNDLDKALLSLSRQFLLMALYPHIKAAQRFPDFDLR 205

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
               L       +     + NPP+ K    +      + K+              +   L
Sbjct: 206 NEDGLLPPPSKYQAPDVVICNPPYRKLNAAETQRYASKFKDVIRS--------QPNIYGL 257

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP--T 395
           F+    N ++     GG   ++  +S L    +G+  S++R  +++   I  I  L   T
Sbjct: 258 FIREALNVVKP----GGLIGLLTPTSFL----SGASFSKLRSRIVDLSHILQIDMLSDRT 309

Query: 396 DLFFRTNIATYLWILS 411
            +F      T + +L 
Sbjct: 310 SMFIAVEQETVISVLR 325


>gi|72080664|ref|YP_287722.1| hypothetical protein MHP7448_0327 [Mycoplasma hyopneumoniae 7448]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228
             +      TP  +V L        ++ L K        + D +CG G FL      +  
Sbjct: 13  SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 65

Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                +      K       HG ++E +    A+  A ++++  + +         +  +
Sbjct: 66  AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 122

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL  + F G +  + + NPP+ +    + + + K      +G         +D  + F  
Sbjct: 123 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 173

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L             +S S  F  +AGS     R +L +N +I+++V      FF+
Sbjct: 174 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 225

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429
               T ++ +     ++        N T+
Sbjct: 226 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 254


>gi|126697508|gb|ABO26711.1| TspDTI restriction endonuclease [Thermus sp. DT]
          Length = 1112

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 29/194 (14%)

Query: 133 LYKICKNFSGIELHP----DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           L  + +     +             +   +Y +L+ R   E+     ++ TP     LA 
Sbjct: 336 LRALIERLDEYDPTTLSLFPEETRDLFKKLYHYLLPR---EIRHNLGEYYTPD---WLAW 389

Query: 189 ALLLDPDDALFKESPGMIR----------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
            LL+  D+  F  +P                 DP CG+G F    +  + + G    +P 
Sbjct: 390 RLLVQLDNTFFAGTPSPNDEKLRQKLLSTRFLDPACGSGTFPVLVIGRMLELGRLLMVPE 449

Query: 239 IL-------VPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                       G +L P           + I  L    + D++  I    ++       
Sbjct: 450 RDLLEAILKNVVGFDLNPLAVLTARVNYLLAISDLLQYRQGDITIPIYLADSVRTPAEGQ 509

Query: 290 KRFHYCLSNPPFGK 303
             F   +   P   
Sbjct: 510 DLFSQGIFVFPTAV 523


>gi|119509399|ref|ZP_01628548.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Nodularia spumigena CCY9414]
 gi|119466013|gb|EAW46901.1| type IV site-specific deoxyribonuclease Eco57I related protein
           [Nodularia spumigena CCY9414]
          Length = 1298

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 92/323 (28%), Gaps = 75/323 (23%)

Query: 33  KVILP-FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF------YNTSE 85
           +VIL  F L+R LE            +             F++    +F      YNT  
Sbjct: 221 QVILNRFLLIRLLETFSREMPFNYLGRVYHNWQQTFPDLPFIEDLRRAFHNTWMGYNTEL 280

Query: 86  YSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI-- 143
           +  S +           YI S       I         I  + + G+LY I    +    
Sbjct: 281 FQPSWIDQLMID---VEYIQS-------II-------VINAVPQEGILYTITGTLANYRS 323

Query: 144 --ELHPDTVPDRVMSNIYEHLIRRF------------GSEVSEGAEDFMTPRDVVHLAT- 188
                  T+   ++   YE  +                 +  +    F TP  +V     
Sbjct: 324 IYNYDFTTLTQDILGTAYEQFLAHQLTLVGDVVKILENQQTRKREGIFYTPDYIVRRIVY 383

Query: 189 ALLLDPDDALFKESPGMIR-----------------TLYDPTCGTGGFLTDAMNHVADCG 231
             L          S G +                  T+ DP CG+G FL  A +++    
Sbjct: 384 QTLQPAIKPKIDASIGFLEVGEFHQAYTVASSVLDLTIIDPACGSGSFLLGAFDYILSEI 443

Query: 232 SH-------HKIPPILVPHGQE-----LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                     KIP              + PE   +      +  ++ DP+  L   +   
Sbjct: 444 KRYNQACTTAKIPENFDLFSHVSVQPIINPEEQIMVKM---LHGVDRDPQAVLLAKLSLW 500

Query: 280 STL--SKDLFTGKRFHYCLSNPP 300
           + L  S+    GKR     S+ P
Sbjct: 501 TKLLRSRPDEYGKRSGSIYSHLP 523


>gi|54020460|ref|YP_115851.1| hypothetical protein mhp340 [Mycoplasma hyopneumoniae 232]
 gi|53987633|gb|AAV27834.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
          Length = 473

 Score = 44.6 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228
             +      TP  +V L        ++ L K        + D +CG G FL      +  
Sbjct: 6   SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58

Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                +      K       HG ++E +    A+  A ++++  + +         +  +
Sbjct: 59  AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL  + F G +  + + NPP+ +    + + + K      +G         +D  + F  
Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L             +S S  F  +AGS     R +L +N +I+++V      FF+
Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429
               T ++ +     ++        N T+
Sbjct: 219 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 247


>gi|306836838|ref|ZP_07469796.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
 gi|304567299|gb|EFM42906.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
          Length = 1397

 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 66/285 (23%), Gaps = 40/285 (14%)

Query: 115 FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
               +  +    LEK    Y+        E+   +   +V+  +YE   R+   + +E  
Sbjct: 573 LSKANLDTETESLEK---FYESV-RIRASEVTSASGKQQVIKELYERFFRKAFKKQAEAL 628

Query: 175 EDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
               TP ++V        +       K       ++ DP  GT  F+   +         
Sbjct: 629 GIVYTPVEIVDFILRAADEVSRKHFGKGLSDESVSILDPFAGTSTFMVRLLQSGLIKPED 688

Query: 234 HKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
                       E+              T+         R  E  P      NI    T 
Sbjct: 689 LARKYANELFATEIMLLAYYVSAVNIETTYNALREEAAQRNDELAPEYVPFTNIALADTF 748

Query: 283 -------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
                              + +       +  + NPP+    +   D    +       R
Sbjct: 749 QVHEEGDIPDLNIFRENNATIERQKNAPINVVIGNPPYSAGQKSANDLNANQKYPSLDQR 808

Query: 324 FGPGLPKISDGS-----MLFLMHLANKLELPPNGGGRAAIVLSSS 363
                   S  +         +             G  A V +  
Sbjct: 809 IADTYAAKSTATSQRTLYDSYLRAFRWATDRIGDQGIVAFVSNGG 853


>gi|83649641|ref|YP_438076.1| type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
 gi|83637684|gb|ABC33651.1| Type I restriction-modification system methyltransferase subunit
           [Hahella chejuensis KCTC 2396]
          Length = 1000

 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 55/395 (13%), Positives = 109/395 (27%), Gaps = 84/395 (21%)

Query: 39  TLLRRLEC---ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
              R L       E    ++ +K  +        ++               +   L  T 
Sbjct: 189 LFFRFLVDRNIVKETDLPSISQKAESLSELFSTPQAMED------------TCLWLDKTF 236

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT------ 149
             + L      +    + IF   D    I ++  +  L  I  + +  +L  D       
Sbjct: 237 NGDLLSLEDNGY----QRIFRHID--DNIEKVCWS--LSNIQHHAANGQLQLDWGWIKFQ 288

Query: 150 -VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
            VP  V+S +YE    +F  +++       TPR +  +          +           
Sbjct: 289 HVPVDVLSQVYEDFAHQFVPDLARKTSVHFTPRQIAEVVIEGAFSAVKSALPHE----AR 344

Query: 209 LYDPTCGTGGFLTDAMNH----------VADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
           + DP+ G G FL  A+            V       +        G ++  +   +    
Sbjct: 345 VLDPSAGAGVFLVLALRRLVAEHWLHTGVRPTRQVIRQVLANQLSGFDINLDALNIAALS 404

Query: 259 MLIRRLESDPRRDLSKNIQQGS---------------------TLSKD--LFTGKRFHYC 295
           + +  LE DP+     +++                        +LS+         +   
Sbjct: 405 LYLAALELDPKPSPLTDLKFKKLIGSVLRLVDNESLGTKTDLGSLSQPIIQGIENHYDIV 464

Query: 296 LSNPPFGKKWEKDKDA--------VEKEHKNGELGRFGPG-LPKISDGSMLFLMHLANKL 346
           + NPP+         +        +  E           G + +     + FL+      
Sbjct: 465 VGNPPWTGFKGGAAKSLNETLAQLIRHEADTTVAKSEADGVVARYGSPDIAFLLAARLWT 524

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
           +      G  A+ L    LF   A      +RR +
Sbjct: 525 KPE----GAIALALHGRFLFQKDA----YALRRHV 551


>gi|15807788|ref|NP_285443.1| hypothetical protein DR_A0119.1 [Deinococcus radiodurans R1]
 gi|6460532|gb|AAF12238.1|AE001862_64 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 671

 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 30/183 (16%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ-------------ELEPETHA- 253
            + DP CG+G FL  A+  + D     ++  ++   G+              +E ET A 
Sbjct: 124 RILDPACGSGNFLFVALKKLLDLEYQVRMAAVMNDIGEFEMPPLVHPQQMLGIEIETFAH 183

Query: 254 -VCVAGMLI--------RRLESD-PRRDLSKNIQQGSTLSKDLFTGKRF---HYCLSNPP 300
            +    + +             + P      NIQ    L     T   +    + + NPP
Sbjct: 184 ELASITLWMGYFQWKRAHGGHWETPILQRLDNIQNRDALLNPDGTEATWPRADFIVGNPP 243

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F    +  +  + + +       F   LP  SD  ++       +  +      RA  V 
Sbjct: 244 FLGD-KMMRSQLGEAYTTQLRETFKDRLPGQSD--LVCYWPEKARALIEAGVTTRAGFVT 300

Query: 361 SSS 363
           ++S
Sbjct: 301 TNS 303


>gi|144227574|gb|AAZ44408.2| conserved hypothetical protein [Mycoplasma hyopneumoniae J]
          Length = 473

 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228
             +      TP  +V L        ++ L K        + D +CG G FL      +  
Sbjct: 6   SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58

Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                +      K       HG ++E +    A+  A ++++  + +         +  +
Sbjct: 59  AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL  + F G +  + + NPP+ +    + + + K      +G         +D  + F  
Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L             +S S  F  +AGS     R +L +N +I+++V      FF+
Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429
               T ++ +     ++        N T+
Sbjct: 219 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 247


>gi|312964340|ref|ZP_07778639.1| putative helicase [Escherichia coli 2362-75]
 gi|312290970|gb|EFR18845.1| putative helicase [Escherichia coli 2362-75]
          Length = 1868

 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 118/388 (30%), Gaps = 82/388 (21%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 55  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 93

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 94  TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 142

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 143 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 183

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 184 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 238

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++   L ++         ++               E      +   +
Sbjct: 239 RKHPAEMAEKIPLVDEGTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 285

Query: 472 TFGYR-RIKVLRPLRMSFILDKTGLA-----RLEADITWRKLSPLHQSFWLDILKPMMQQ 525
             G++ RI+V    R    +D   L      R E+ I W  L     S   D++     +
Sbjct: 286 EKGFQGRIEV----RADGQIDNLALKAKLIHRFESRIDWSLLDMAEPSPTADVVGEGEMR 341

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKAS 553
           +    W +      I+++  K LK+ A+
Sbjct: 342 LINGVWQKYAGGRWIEADAGKELKIDAA 369


>gi|265753906|ref|ZP_06089261.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235620|gb|EEZ21144.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1032

 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 49/242 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          +     A FK++   + T  +P+ G GGFL  +M           
Sbjct: 98  AFYTP----KFLVDAVTRQIHATFKDNCLQMSTFLEPSAGIGGFLPVSMPGTRSYAFEKD 153

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294
                                    +  L      D +  +  G  T++      + F  
Sbjct: 154 ------------------------CLTGLILSLLYDEATTVTAGFETIADQHLEHESFDV 189

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             SN PFG     D +  +   K G   +    +      +  F+  +        N GG
Sbjct: 190 IASNIPFGNFRVFDAEMWK---KGGMYEQSAKTIH-----NYFFVKAM-----ELLNEGG 236

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411
             A V             G   +R +L+ +  +   + LP  LF +T+   + + L I  
Sbjct: 237 LLAFVAPRGIADT----PGNKFVREYLVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQ 292

Query: 412 NR 413
             
Sbjct: 293 KH 294


>gi|327314238|ref|YP_004329675.1| Eco57I restriction endonuclease [Prevotella denticola F0289]
 gi|326945278|gb|AEA21163.1| Eco57I restriction endonuclease [Prevotella denticola F0289]
          Length = 487

 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 47/300 (15%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +        +    F T   +     ++     +            L D   G+G    
Sbjct: 14  FVSSNAKAGRKQYGQFFTSESIAVFMASMFHIDLE-------KDSLRLLDAGAGSGILSV 66

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             ++ + + G    +  +   + +++           +L + L S      +  I+  + 
Sbjct: 67  ALLSRIREIGYTGSVKLVCYENDEKVLG---------VLAKNLASVKDSHFTFEIRHENY 117

Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++   F           G+ +   + NPP+ K  +   DA+  +           G P  
Sbjct: 118 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHMKEVC-------YGAP-- 168

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-- 389
            +   LF     + L    N GG    V+  S  +   A    +  R++LL +  I    
Sbjct: 169 -NLYFLFWAMGIHNL----NEGGELVYVIPRS--WTSGAY--FARFRKYLLSHCAITDIH 219

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQ 448
           I      +F    +     I+  RK   R  K+++ ++ T  +  +R        +  D 
Sbjct: 220 IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIRISSSDTSDFLDLRRFDVDYNTVVADN 279


>gi|71893673|ref|YP_279119.1| hypothetical protein MHJ_0319 [Mycoplasma hyopneumoniae J]
          Length = 480

 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228
             +      TP  +V L        ++ L K        + D +CG G FL      +  
Sbjct: 13  SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 65

Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                +      K       HG ++E +    A+  A ++++  + +         +  +
Sbjct: 66  AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 122

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL  + F G +  + + NPP+ +    + + + K      +G         +D  + F  
Sbjct: 123 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 173

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L             +S S  F  +AGS     R +L +N +I+++V      FF+
Sbjct: 174 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 225

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429
               T ++ +     ++        N T+
Sbjct: 226 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 254


>gi|237786182|ref|YP_002906887.1| hypothetical protein ckrop_1616 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237759094|gb|ACR18344.1| hypothetical protein ckrop_1616 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 954

 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 44/160 (27%), Gaps = 40/160 (25%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHH--------------------KIPPILVPHGQE 246
               DP CG G FL  A   +    +                      +   I   +G E
Sbjct: 401 MVFLDPACGCGNFLVVAYRELRRIETDIIVALRAKEGQQTASMDVSLDQRLSIGQFYGFE 460

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDL----FTG 289
           L      +    M +   +++ R   +              +++ G+ L  D      + 
Sbjct: 461 LNWWPAKIAETAMFLVDHQANRRLAEAVGDAPERLPITITAHVRHGNALRMDWAQEVPST 520

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHK---NGELGRFGP 326
           K   Y   NPPF  ++ K  +      +       G    
Sbjct: 521 KGDTYVFGNPPFIGQYTKTAEQTADMKQVWGKDYDGYLDY 560


>gi|188591330|ref|YP_001795929.1| putative restriction endonuclease/methyltransferase [Cupriavidus
           taiwanensis]
 gi|170938725|emb|CAP63711.1| putative restriction endonuclease/methyltransferase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 1068

 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 58/189 (30%), Gaps = 19/189 (10%)

Query: 110 NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP--DRVMSNIYEHLIRRFG 167
           N +   ED DF   +        L    +  +      D     + ++  +Y+ L+    
Sbjct: 267 NVERFIED-DFFHWVNAEPYFSRLKPAFREINNRIGEYDLTDVREDILKGVYQELVD--- 322

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +      ++ TP  +                +        + DP CG+G FL  A+  +
Sbjct: 323 LDTRHALGEYYTPDWLCEKIVE----------ETRFTETYRVLDPACGSGSFLRAAIAKM 372

Query: 228 ADCGSHHK-IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK--NIQQGSTLSK 284
            +               G ++ P +  +    ++I   +   + +     +I   ++L  
Sbjct: 373 RNESPQIDATTISRRVVGIDIHPLSVQIAKTTIIIAMGKLIAQSNDPVTLHIYLANSLLV 432

Query: 285 DLFTGKRFH 293
              +   F 
Sbjct: 433 PETSADLFE 441


>gi|225022944|ref|ZP_03712136.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681942|ref|ZP_07404746.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
 gi|224944167|gb|EEG25376.1| hypothetical protein CORMATOL_02990 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658415|gb|EFM47918.1| putative site-specific DNA-methyltransferase (adenine-specific)
           [Corynebacterium matruchotii ATCC 14266]
          Length = 571

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 37/136 (27%), Gaps = 18/136 (13%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +   +      TP ++       ++   D           T+ DP CG G  L      
Sbjct: 8   AAANVKVHGQHYTPPELAEFLADHIVAAADLD-----RPELTIIDPACGDGELLVAVARS 62

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +           IL   G +++        A +           +    + QG  L    
Sbjct: 63  LK----DAGYLGILKLIGYDIDAAAVEQARARL--------RDVNRDAQVIQGDFLLHQR 110

Query: 287 -FTGKRFHYCLSNPPF 301
                     ++NPP+
Sbjct: 111 NLPTHSVDIIITNPPY 126


>gi|144575384|gb|AAZ53699.2| conserved hypothetical protein [Mycoplasma hyopneumoniae 7448]
          Length = 473

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 36/269 (13%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT-DAMNHVA 228
             +      TP  +V L        ++ L K        + D +CG G FL      +  
Sbjct: 6   SQKLNGQVFTPDLLVDLILDQAGYKENILKKH-------IIDNSCGNGQFLVKIIERYCK 58

Query: 229 DCGSHH------KIPPILVPHGQELEPETH--AVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                +      K       HG ++E +    A+  A ++++  + +         +  +
Sbjct: 59  AFFRENSNLKSLKHQLETYIHGIDIEEKHIKNAIFRANLVVQNYKIEGVNWDF---KAKN 115

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
           TL  + F G +  + + NPP+ +    + + + K      +G         +D  + F  
Sbjct: 116 TLEIEHFNG-KMDFVVGNPPYIRIHNLNNNKLLKNFNFPTIGM--------TDIYLAFYE 166

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                L             +S S  F  +AGS     R +L +N +I+++V      FF+
Sbjct: 167 IGIKMLSKNG-----ILSYISPSSFFTSKAGSI---FREFLYKNKIIKSVVDHKHHQFFK 218

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATD 429
               T ++ +     ++        N T+
Sbjct: 219 ATTYTTIFTIDKSARKQVVDYFNFDNKTN 247


>gi|313887008|ref|ZP_07820708.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923534|gb|EFR34343.1| putative ribosomal subunit interface protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 2056

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 77/247 (31%), Gaps = 52/247 (21%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F T R +V                 S   ++   DP+ G G F       V    +  K 
Sbjct: 105 FYTDRRIVSAI--------SDALATSGVTLKRCLDPSSGMGAFAETFAKQVGIVDALEK- 155

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFH 293
                                 +L  R+          NI   +   +    L   +++ 
Sbjct: 156 ---------------------DLLTARISQALHPYGEGNIFVRNEPFEAIAPLEETEKYD 194

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
              SN PFG     D    ++E+  G           I +       +   K       G
Sbjct: 195 LVTSNIPFG-----DFMVYDREYSRGNDLFKKESTRAIHN-------YFFVKGLDCTREG 242

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWIL 410
           G  A + S   L    A   E  IRR+L++N  + + + LP+ +F     T + + L +L
Sbjct: 243 GLIAFITSQGVL---DAALNE-PIRRYLMQNSRLISAIRLPSGMFNEQAGTEVGSDLIVL 298

Query: 411 SNRKTEE 417
             +  +E
Sbjct: 299 QKQSGKE 305


>gi|291524354|emb|CBK89941.1| DNA methylase [Eubacterium rectale DSM 17629]
          Length = 2929

 Score = 44.2 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 66/260 (25%), Gaps = 58/260 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   V+      +                 + +P+CG G F    
Sbjct: 1372 EEYAAARGSTLNAHYTSPTVIRAIYETVG--------RMGFETGNILEPSCGVGNFFGML 1423

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+  +  +          ++D      + I +     
Sbjct: 1424 PEEMR----------NSRLYGVELDSISGRIAKQ----LYPKADITVAGFETIDRRD--- 1466

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                    +   + N PFG+   +DK   +                              
Sbjct: 1467 -------FYDLAIGNVPFGQYQVRDKAYDKLNFSIHNY--------------------FF 1499

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
             K       GG  A V            + +S +RR+L +   +  ++ LP D F     
Sbjct: 1500 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAFKKNAG 1554

Query: 403  IATYLWILSNRKTEERRGKV 422
                  I+  +K +     V
Sbjct: 1555 AEVVSDIIFLQKRDRPLDIV 1574


>gi|209886780|ref|YP_002290637.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
 gi|209874976|gb|ACI94772.1| N-6 DNA methylase [Oligotropha carboxidovorans OM5]
          Length = 1700

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 64/249 (25%), Gaps = 58/249 (23%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP  +V            A  +        + +P  GTG F         +      
Sbjct: 169 AHFTPEFIVRSIW--------AALRRLGWRGGRVLEPGIGTGLFPALMPEEFRE------ 214

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
              +    G EL+P T  +                     I  G   ++     + F   
Sbjct: 215 ---VSYVTGVELDPATARIAR------------LLQPRARIITGD-FARAELP-RSFDLA 257

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPPF  +  +   A                          F+    + L+     G  
Sbjct: 258 IGNPPFSDRTVRSDRAYRSMGLRLHDY---------------FIARAIDLLKP----GAL 298

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
           A  V S   +    A       R  + +   + A + LP   F     T++   L     
Sbjct: 299 ATFVTSHGTMDKADAA-----AREHIAKTADLIAAIRLPEGSFRAVAGTDVVVDLLFFRK 353

Query: 413 RKTEERRGK 421
           RK  +  G 
Sbjct: 354 RKIGDPEGD 362


>gi|116255163|ref|YP_770997.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259811|emb|CAK02905.1| putative methylase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1696

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 58/409 (14%), Positives = 105/409 (25%), Gaps = 71/409 (17%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  +V            A  +        + +P  GTG       
Sbjct: 154 DYASLARCTQYAHFTPELIVRAIW--------AGIQRLGWRGGRVLEPGIGTG------- 198

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +       +        G EL+P T  +                     I +G     
Sbjct: 199 --LFPALIPPEYRDTAYVTGIELDPVTARIVR------------LLQPRSRIIEGDFART 244

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL     +   + NPPF  +  +   A                          F+    +
Sbjct: 245 DLAP--IYDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY---------------FIARSID 287

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L+     G  AA V S   L         +  R  + +   + A + LP   F     T
Sbjct: 288 LLKP----GALAAFVTSHGTL-----DKAATTAREHIAKTADLIAAIRLPEGSFRRDAGT 338

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQRRQILDIYVSRE 460
           ++   +     RK  E  G    ++  ++  ++ +EG  R           +L       
Sbjct: 339 DVVVDILFFRKRKAGEPEGDQIWLDVDEVRPAVDDEGAIRVNRWFARHPDFVLGT----- 393

Query: 461 NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                  L    FG     V R       +    +  L AD+   + +P+      ++ +
Sbjct: 394 -----HALTSGPFGETYTCVARDGADLDTILDAAIELLPADVYDGEPTPIDIDLEDELAE 448

Query: 521 PMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFI--NAFGRK 567
            +  +       E            + L   A    +      +    K
Sbjct: 449 IVDLRPKDSPVREGSFFVDRAKGLMQMLDGTAVAVTVRKGRPGDGISEK 497


>gi|317056964|ref|YP_004105431.1| N-6 DNA methylase [Ruminococcus albus 7]
 gi|315449233|gb|ADU22797.1| N-6 DNA methylase [Ruminococcus albus 7]
          Length = 1070

 Score = 44.2 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 66/200 (33%), Gaps = 25/200 (12%)

Query: 98  NNLESYIASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
           + +++ +     + + I  F D+D+   + R     +   I  +   ++          +
Sbjct: 276 DEIKAILNGEHFSRQNIYNFVDYDYFGWLNRSPYVDI---IIPSVREMQNRLKAYDFSRL 332

Query: 156 SN--IYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  I+  L+ +  ++          TP  +        ++            +  + D 
Sbjct: 333 GDEDIFGRLLAQLANKEHRLMLGQEFTPHWIARDIVKYNINKIGDE-------VPHIMDM 385

Query: 213 TCGTGGFLTDAMNHVADCG----SHHKIPPILVPH----GQELEPETHAVCVAG--MLIR 262
            CG+G FL +++N V +        +      +      G +++P    +      M +R
Sbjct: 386 CCGSGVFLIESINAVREKYSISSDKYDAKKDAIIFSAVMGFDIDPLAVMLAKVNWIMTMR 445

Query: 263 RLESDPRRDLSKNIQQGSTL 282
            L       ++  I    +L
Sbjct: 446 DLFPLHSGSITVPIYHADSL 465


>gi|307637150|gb|ADN79600.1| adenine specific DNA-methyltransferase [Helicobacter pylori 908]
 gi|325995741|gb|ADZ51146.1| adenine specific DNA methyltransferase [Helicobacter pylori 2018]
 gi|325997337|gb|ADZ49545.1| adenine specific DNA methyltransferase [Helicobacter pylori 2017]
          Length = 442

 Score = 44.2 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTTQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                T  DP  G+G F+  A+              +   +G + +     +    +   
Sbjct: 136 -----TFCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAVTLTKKRI--- 178

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               +  R    NI Q   LS  L    +F    +NPP+GKK+ +++       K     
Sbjct: 179 ---KERYRLDCPNIMQKDFLS--LKHAPQFDCIFTNPPWGKKYNQNQ-------KENFKQ 226

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           RF   L +  D + LF M   N L+   + G
Sbjct: 227 RFN--LSQSLDSASLFFMASLNCLKENAHLG 255


>gi|298674597|ref|YP_003726347.1| hypothetical protein Metev_0645 [Methanohalobium evestigatum
           Z-7303]
 gi|298287585|gb|ADI73551.1| conserved hypothetical protein [Methanohalobium evestigatum Z-7303]
          Length = 247

 Score = 44.2 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 38/130 (29%), Gaps = 19/130 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  I+  L        ++    F TP ++   A  +     D         +    +P
Sbjct: 118 DFLGTIFMEL-----ELPNKFGGQFFTPYELSKFAAQVTFSDYD----SDTDEVIEFNEP 168

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G G F+      + + G + +    +    Q+ +     +    + +           
Sbjct: 169 AVGAGSFVIAVCEMLHEKGVNFQNRLKVTA--QDSDYMVFCMAYTQLSLIGC-------- 218

Query: 273 SKNIQQGSTL 282
              +  G+TL
Sbjct: 219 PAQLVHGNTL 228


>gi|4426955|gb|AAD20627.1| DNA methylase homolog DarB' [enterobacteria phage P1]
          Length = 512

 Score = 44.2 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 87/275 (31%), Gaps = 50/275 (18%)

Query: 288 TGKRFHYCLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
               F + + N PFG             +E   G                  F++ + +K
Sbjct: 45  PNDSFDHVVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDK 88

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           ++    GG    IV  S       +GS    +R  L           LPT  F     +T
Sbjct: 89  IKP---GGFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTST 140

Query: 406 YL-WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
            +  +L  +   E   K+ L++ + L ++         ++               E    
Sbjct: 141 VVDVVLMRKHPAEMAEKIPLVHESTLESA--------NVLWPTFISG-----KWFEKDGR 187

Query: 465 SRMLDYRTFGYR-RIKVLRPLRMSFILDKTGLAR-----LEADITWRKLSPLHQSFWLDI 518
             +   +  G++ RI+V    R    +D   L        E+ I W  L     S   D+
Sbjct: 188 RFVHGTQEKGFQGRIEV----RADGQIDNQALKAKLIHCFESRIDWYLLDMAEPSPTADV 243

Query: 519 LKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
           +     ++    W +      I+S+  K LK+  +
Sbjct: 244 VDEGEMRLINGVWQKYAGGRWIESDAGKELKIDVA 278


>gi|237740829|ref|ZP_04571310.1| superfamily II DNA and RNA helicase [Fusobacterium sp. 4_1_13]
 gi|229431213|gb|EEO41425.1| superfamily II DNA and RNA helicase [Fusobacterium sp. 4_1_13]
          Length = 790

 Score = 44.2 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 71/256 (27%), Gaps = 59/256 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             +          F TP+ V+      L            G    + +P+ G G F+ + 
Sbjct: 48  EEYTKARESTLTAFFTPKVVIDNIYKGL-----DNLGFKEGK---ILEPSSGIGNFIGNI 99

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +               +  EL+  +  +  A                 NI Q     
Sbjct: 100 PEKME----------NSKFYSVELDSLSGRIEKA------------LYPQANI-QIDGFE 136

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   + N PFG     DK+         +                 F     
Sbjct: 137 NIDFRNNFFDVAVGNVPFGDFKVNDKEYARNNFLIHDY----------------FFAKSI 180

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
           +K+      GG  A +       NG     +  IRR++ E   +   V LP + F     
Sbjct: 181 DKVRP----GGVIAFIT-----SNGTMDKKDESIRRYIGERCELLGAVRLPNNTFKGVAG 231

Query: 401 TNIATYLWILSNRKTE 416
           T + + +  L  R+ +
Sbjct: 232 TEVTSDIIFLKKREEK 247


>gi|325269958|ref|ZP_08136567.1| DNA methylase [Prevotella multiformis DSM 16608]
 gi|324987681|gb|EGC19655.1| DNA methylase [Prevotella multiformis DSM 16608]
          Length = 1954

 Score = 44.2 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 79/265 (29%), Gaps = 55/265 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++       L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIAEALHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++      D    +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILGHLHPDQKVRVQGFEKIEKPF--TDYFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
           +SN PFG     D    + E    +   R        +  +  FL     K       GG
Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSQDPARRSA---PKAIHNYFFL-----KSLDAVREGG 240

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILS 411
             A + S   L         + IR +++ N  +  +  LP +LF     T + + L IL 
Sbjct: 241 IVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLIILQ 296

Query: 412 NRKTEERRGKVQLINATDLWTSIRN 436
               ++R     L +  +L+     
Sbjct: 297 KNSGKKRE----LYDYEELFVQTEK 317


>gi|325473763|gb|EGC76952.1| hypothetical protein HMPREF9353_02054 [Treponema denticola F0402]
          Length = 779

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 47/186 (25%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT------------ 188
           +  E     V   ++  I+E+L+     E ++    F TP+++V                
Sbjct: 400 TDPEDREVGVDPEMLGKIFENLL-----EDNKDKGAFYTPKEIVQYMCRESLIAYLSEET 454

Query: 189 -------ALLLDPDDALFKESPG-----MIRTLYDPTCGTGGFLTDAMNHV--------- 227
                   L+L+ D    K+            + DP  G+G F    +N +         
Sbjct: 455 QDEPAMRNLVLNNDIQTIKDKKKVLSALKNIKICDPAVGSGAFPMGMLNELFACRILLEG 514

Query: 228 ----ADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQ 278
                +  S  K        +G ++E     +      +  +  +       N    I Q
Sbjct: 515 DIADEENRSRIKKEIVRENIYGVDIEKGAVDIARLRFWLAIIVDEKIPLPLPNLDYKIMQ 574

Query: 279 GSTLSK 284
           G++L +
Sbjct: 575 GNSLLE 580


>gi|315640438|ref|ZP_07895548.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
 gi|315483798|gb|EFU74284.1| superfamily II DNA/RNA helicase [Enterococcus italicus DSM 15952]
          Length = 1571

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 84/316 (26%), Gaps = 53/316 (16%)

Query: 109  DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            +N     E   F+     LE    LY+  +  +      +     ++  +Y+        
Sbjct: 798  ENIVKELEKAGFAKEQENLEP---LYESVRMRAEGVEKSEDKQKIII-TLYDKFFSTAFK 853

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM-----IRTLYDPTCGTGGFLTDA 223
              +E      TP +VV      +    D + K   G         + DP  GTG F+   
Sbjct: 854  STTERLGIVFTPVEVVDFIVKSV----DDVLKIHFGKSLASENVHVLDPFTGTGTFIVRT 909

Query: 224  MNHVADCGSHHKIP-------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS--- 273
            ++++ +     KI             H  E+   ++ +    +     E +   +     
Sbjct: 910  LSYLKEQMDEGKINLADITRKFTQELHANEIILLSYYIAAINIEATYDEINGTEEGYVPF 969

Query: 274  KNIQQGSTL---SKDLFTGKRF----------------HYCLSNPPFGKKWEKDKDAVEK 314
              I    T      D      +                   + NPP+        D  + 
Sbjct: 970  DGIVLTDTFESTEDDKVIEDTYFITNDDRLKVQQKVPITAIIGNPPYSIGQSSVNDNNQN 1029

Query: 315  EHKNGELGRFGPGLPKISDGSM------LFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
             +             K S  ++       ++       +     G     V + S + + 
Sbjct: 1030 LNYPKLNASIEMTYAKYSKANLKKAVYDSYIQAFRWSSDRIKELG-VIGFVSNGSFIDSQ 1088

Query: 369  RAGSGESEIRRWLLEN 384
                     R+ L E 
Sbjct: 1089 STDG----FRKVLFEE 1100


>gi|237741482|ref|ZP_04571963.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
 gi|229429130|gb|EEO39342.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
          Length = 2036

 Score = 44.2 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 66/293 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            +   +      F TP+ V+        D       E       + +P+C  G F+ +  
Sbjct: 518 EYNKAMESTLTAFYTPKVVI--------DNIYTKLIEFGFKEGRILEPSCAVGNFIGNLP 569

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +               +G EL+  +  +               +   ++  Q     +
Sbjct: 570 KEL----------DSSQVYGVELDNISGNIAK-------------QLYPQSEIQVKGFEE 606

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F+   F   + N PFG     +   +++E+                  + L   +   
Sbjct: 607 TNFSNNFFDIAIGNVPFG-----NFKILDREYDR---------------YNFLIHDYFFA 646

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       GG  A + SS  L        +  +R++L E   +   V LP  +F      
Sbjct: 647 KTIDKVKSGGIIAFITSSGTL-----DKKDKSVRKYLGERCELLGAVRLPNSVFKGVAGA 701

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453
            + + +  L        R K+Q ++    +       G K      D    I+
Sbjct: 702 EVTSDILFLKK------RDKIQELDNETWYEIAEDKNGIKYNKYFVDNPEMII 748


>gi|225376798|ref|ZP_03754019.1| hypothetical protein ROSEINA2194_02440 [Roseburia inulinivorans DSM
            16841]
 gi|225211424|gb|EEG93778.1| hypothetical protein ROSEINA2194_02440 [Roseburia inulinivorans DSM
            16841]
          Length = 1851

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 66/260 (25%), Gaps = 58/260 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   V+      +                 + +P+CG G F    
Sbjct: 1388 EEYAAARGSTLNAHYTSPTVIRAIYETVG--------RMGFETGNILEPSCGVGNFFGML 1439

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+  +  +          ++D      + I +     
Sbjct: 1440 PEEMR----------NSRLYGVELDSISGRIAKQ----LYPKADITVAGFETIDRRD--- 1482

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                    +   + N PFG+   +DK   +                              
Sbjct: 1483 -------FYDLAIGNVPFGQYQVRDKAYDKLNFSIHNY--------------------FF 1515

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
             K       GG  A V            + +S +RR+L +   +  ++ LP D F     
Sbjct: 1516 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAFKKNAG 1570

Query: 403  IATYLWILSNRKTEERRGKV 422
                  I+  +K +     V
Sbjct: 1571 AEVVSDIIFLQKRDRPLDIV 1590


>gi|265755241|ref|ZP_06090011.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234383|gb|EEZ19973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1946

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 76/255 (29%), Gaps = 52/255 (20%)

Query: 164 RRFGSEVSEG-AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R+   + +     F TP ++       L +               + +P+ G G F+  
Sbjct: 91  KRYADAMKQSVLTAFYTPPEITGTIAEALHEHGI--------RPDRVLEPSAGVGAFV-- 140

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + V +      I                      ++  ++      D    +Q    +
Sbjct: 141 --DAVLENKPDADIMAFEK----------------DLMTGKILGHLHPDQKVRVQGFEKI 182

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG-RFGPGLPKISDGSMLFLMH 341
            K       F   +SN PFG     D    + E    +   R        +  +  FL  
Sbjct: 183 EKPF--TDYFDLAISNIPFG-----DVAVFDPEFTGSQDPARRSA---PKAIHNYFFL-- 230

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF-- 399
              K       GG  A + S   L         + IR +++ N  +  +  LP +LF   
Sbjct: 231 ---KSLDAVREGGIVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDN 283

Query: 400 -RTNIATYLWILSNR 413
             T + + L IL   
Sbjct: 284 AGTEVGSDLIILQKN 298


>gi|153939208|ref|YP_001390615.1| restriction endonuclease family protein [Clostridium botulinum F
           str. Langeland]
 gi|152935104|gb|ABS40602.1| restriction endonuclease family protein [Clostridium botulinum F
           str. Langeland]
 gi|295318693|gb|ADF99070.1| restriction endonuclease family protein [Clostridium botulinum F
           str. 230613]
          Length = 741

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 48/158 (30%), Gaps = 19/158 (12%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135
             F N  +  L ++   N +     YI     +     +  DF      L       L K
Sbjct: 92  LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +G +    +     +  IYE +I     E  +    F TP  ++      +    
Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F         L D + G G F+  A + +    + 
Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE 232


>gi|1942354|pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942355|pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942410|pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942411|pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
          Length = 421

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                                 G E++P+   +                  ++ I     
Sbjct: 56  AFREA---------HGTGYRFVGVEIDPKALDL---------------PPWAEGILADFL 91

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339
           L +    G+ F   L NPP+G   E  K  +    K  +              ++   FL
Sbjct: 92  LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365
                 L+     GG    V+ ++ L
Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169


>gi|1942356|pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|1942357|pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
 gi|155127|gb|AAA27506.1| methylase [Thermus aquaticus]
          Length = 421

 Score = 44.2 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                                 G E++P+   +                  ++ I     
Sbjct: 56  AFREA---------HGTGYRFVGVEIDPKALDL---------------PPWAEGILADFL 91

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339
           L +    G+ F   L NPP+G   E  K  +    K  +              ++   FL
Sbjct: 92  LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365
                 L+     GG    V+ ++ L
Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169


>gi|322805588|emb|CBZ03153.1| bpmi endonuclease-methyltransferase fusion protein type IIG
           [Clostridium botulinum H04402 065]
          Length = 741

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 20/172 (11%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135
             F N  +  L ++   N +     YI     +     +  DF      L       L K
Sbjct: 92  LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +G +    +     +  IYE +I     E  +    F TP  ++      +    
Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
              F         L D + G G F+  A + +    +   I  +   + Q +
Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE-NIQNLQEKYKQNI 245


>gi|229488227|gb|ACQ73747.1| M.SdaI [Streptomyces diastaticus]
          Length = 486

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 34/227 (14%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           + +           F TP     L  ++L   D             + DP  G G     
Sbjct: 15  LGKLDPRTQAVLGQFFTPVKAATLMASMLRVDD-------LSGSVRVLDPGAGAGSLSAA 67

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
            ++ +        +  + V     + P   A          +  D          +G  L
Sbjct: 68  LVDRLHTERPDVAVHVVAVETDPFITPYLRATLEECQTAYGISYDL--------VEGDYL 119

Query: 283 SKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
             +       F + ++NPP+GK        +    +  +            +  + F   
Sbjct: 120 LDEGAELDGPFDFVIANPPYGKLASDSPTRLATATRAVDTP----------NVYVAFWAR 169

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
               L+    G        ++ P +           RRWLL    ++
Sbjct: 170 AVASLKKDGQGAFIVPRSWANGPYYRS--------FRRWLLSTASLD 208


>gi|218296315|ref|ZP_03497071.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Thermus aquaticus Y51MC23]
 gi|218243387|gb|EED09917.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Thermus aquaticus Y51MC23]
          Length = 421

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNAAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                                 G E++P+   +                  ++ I     
Sbjct: 56  AFREA---------HGTAYRFVGVEIDPKALDL---------------PPWAEGILADFL 91

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339
           L +    G+ F   L NPP+G   E  K  +    K  +              ++   FL
Sbjct: 92  LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365
                 L+     GG    V+ ++ L
Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169


>gi|288594|emb|CAA68551.1| methylase [Thermus aquaticus]
          Length = 363

 Score = 44.2 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNAAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                                 G E++P+   +                  ++ I     
Sbjct: 56  AFREA---------HGTAYRFVGVEIDPKALDL---------------PPWAEGILADFL 91

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339
           L +    G+ F   L NPP+G   E  K  +    K  +              ++   FL
Sbjct: 92  LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365
                 L+     GG    V+ ++ L
Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169


>gi|169830597|ref|YP_001716579.1| hypothetical protein Daud_0394 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637441|gb|ACA58947.1| hypothetical protein Daud_0394 [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 1581

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 48/188 (25%), Gaps = 51/188 (27%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV- 227
              +G   F TP  +V       L P       +      + DP CG+  FL +AM  + 
Sbjct: 524 SARKGTGSFYTPLPLVRDLVYHALGPLAEGKSPAEIESLRVLDPACGSAHFLVEAMRFLG 583

Query: 228 --------------------------------------ADCGSHHKIPPILV-----PHG 244
                                                     S  +             G
Sbjct: 584 RELHRAYAEGYGAKGPPQFRSTTGQRWDSDWQVSDEEARATNSEARAWCKRRIAERCLFG 643

Query: 245 QELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
            +L P    +    + I  L  D P      +++ G++L             L +PP   
Sbjct: 644 VDLNPTAVNLARVALWIESLAGDRPLTYFEHHVRCGNSLLGTWLKR------LDDPPLPS 697

Query: 304 KWEKDKDA 311
             ++  + 
Sbjct: 698 MEKRQPNG 705


>gi|332299075|ref|YP_004440997.1| type IIS restriction endonuclease, [Treponema brennaborense DSM
           12168]
 gi|332182178|gb|AEE17866.1| type IIS restriction endonuclease, putative [Treponema
           brennaborense DSM 12168]
          Length = 1124

 Score = 44.2 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 51/213 (23%)

Query: 151 PDRVMSNIYEHLIRRFG----SEVSEGAEDFMTPRDVVHLATALLLDP------------ 194
              ++  ++E+L+  +         + +  F TPR++V+    + L+             
Sbjct: 393 DPELLGKVFENLLGTYNPETKETARKDSGSFYTPREIVNYMVKISLEKYLQQKISSLKQE 452

Query: 195 ---------------DDALFKESPGMIRTLYDPTCGTG----GFLTDAMNHVADCGSHHK 235
                          DD+    +  M   ++DP CG+G    G L   +  +    S   
Sbjct: 453 EAELLFSSDETNAPFDDSEKLTNCLMNVKVFDPACGSGAFPMGILQALVLAIKKLNSDKY 512

Query: 236 IPPI-----------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                             +G +++     +      I  +    + + + N         
Sbjct: 513 KTNKDLYNLKLHLIENCIYGSDIQSIAIQIAKLRFFISLICEQDKTEDANN-----NYGF 567

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
           D        +  +N   G K  +++  + +  +
Sbjct: 568 DPLPNLETKFVSANSLIGIKKAENQGNLFENPE 600


>gi|294501530|ref|YP_003565230.1| hypothetical protein BMQ_4794 [Bacillus megaterium QM B1551]
 gi|294351467|gb|ADE71796.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
          Length = 330

 Score = 44.2 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 53/312 (16%), Positives = 99/312 (31%), Gaps = 51/312 (16%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           Y+ + ++  + +F+       +  + K   L K   + +      D      +   Y+  
Sbjct: 29  YLEAVAETGENLFQGTILQEELDEVTK-KRLKKEYDSIT-----LDHFEKETIRKAYQLA 82

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +   E  +     MTP  V    + L+          +     TL DP  G G  LT 
Sbjct: 83  ILKGMKEAVQPNHQ-MTPDAVGLFVSYLV------GKFMAGKDKYTLLDPAVGAGNLLTT 135

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +    +  +       +G +++     +                    N     +L
Sbjct: 136 ---ILNTHAASIE-----HVYGVDVDDLLLQLTYVN-----ANLQKHGVQLFN---QDSL 179

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            + LF        + + P G            E       R   G         LF+   
Sbjct: 180 -QPLFID-PVDLVVCDLPVGY-------YPNDEGAKEYKVRAEEGHT---YAHHLFIEQS 227

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRT 401
              L+    GG   A++ ++  LF     S +S + + LL E  +++ IV LP  +F + 
Sbjct: 228 LRHLKD---GGYVVALIPNN--LF----ESEQSHLLQPLLKEEAIVQGIVQLPLSMFKQE 278

Query: 402 NIATYLWILSNR 413
             A  + IL  +
Sbjct: 279 QAAKSIIILQKQ 290


>gi|312863499|ref|ZP_07723737.1| N-6 DNA Methylase [Streptococcus vestibularis F0396]
 gi|311101035|gb|EFQ59240.1| N-6 DNA Methylase [Streptococcus vestibularis F0396]
          Length = 1331

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 50/390 (12%), Positives = 102/390 (26%), Gaps = 76/390 (19%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           ++  A     ++ E         F+      L+      TR+ +E+ +       + + +
Sbjct: 563 KQEEALSEDELEPEVTETPPATDFHFPE--DLTDFYPKTTRDKVETNV----AAVR-LVK 615

Query: 117 DFDFSSTIARLEKAGLLYKIC-------KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             +     A   +  LL K         + F           + + + + E   + +   
Sbjct: 616 SLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREELKTLVTE---KEYSDM 672

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                  + T   ++               +        + DP+ GTG F      H+ +
Sbjct: 673 KQSSLTAYYTDPLLIREMWN--------KLERDGFTGGRVLDPSMGTGNFFAAMPKHLRE 724

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +G EL+  T A+                  + +I+         F  
Sbjct: 725 NSE---------LYGIELDTITGAIAK------------HLHPNSHIEV-KGFETIAFND 762

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   LSN PF              +      R+        D   +   +   K    
Sbjct: 763 NSFDLVLSNVPFA-------------NIRIADSRY--------DKPYMIHDYFVKKSLDL 801

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406
            + GG+ A++        G        I + + E       V LP   F     TN+ T 
Sbjct: 802 VHDGGQVAMI-----SSTGTMDKRTENILQDIRETADFLGGVRLPDSAFNAIAGTNVTTD 856

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +        +         + +  +     
Sbjct: 857 MLFFQKHMDKGYVADDLAFSGSIRYDKDDR 886


>gi|134288527|ref|YP_001110690.1| hypothetical protein Bcep1808_7001 [Burkholderia vietnamiensis G4]
 gi|134133177|gb|ABO59887.1| hypothetical protein Bcep1808_7001 [Burkholderia vietnamiensis G4]
          Length = 214

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 38/138 (27%), Gaps = 16/138 (11%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
            ++  +Y+ L         +     F +P  +  L   +             G +    D
Sbjct: 48  DILGPLYQEL----ACHGGKQLLGQFFSPWPLAALMATITEP---WSSDIDAGRLAVACD 100

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDP 268
           P CG+G  +    + + +              G +++     +C   M    +       
Sbjct: 101 PACGSGVMMLATAHTILNAQGPA-ALKSWSFVGCDIDG----ICARMMAIQFLANCAVHR 155

Query: 269 RRDLSKNIQQGSTLSKDL 286
                  +  G +L  D 
Sbjct: 156 IEVGEVIVFCGDSLRVDQ 173


>gi|307566488|ref|ZP_07628919.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307344799|gb|EFN90205.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 1507

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G   T+            +   +     Q + P 
Sbjct: 111 IVAAISDALTSVDVPIRRCLDPSAGMG-AFTETFAKRTGMVDAMEKDLLTTRISQAIHPY 169

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
                   +++R+   +   +L                  ++    SN PFG     D+ 
Sbjct: 170 ----GKGNIIVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDFMVYDRS 211

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             + E+                  +  F+     K       GG  A + S   L + + 
Sbjct: 212 YSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGVLDSPKN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                 IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 260 E----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|260497888|ref|ZP_05816007.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
 gi|260196554|gb|EEW94082.1| II DNA and RNA helicase [Fusobacterium sp. 3_1_33]
          Length = 2036

 Score = 44.2 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 66/293 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            +   +      F TP+ V+        D       E       + +P+C  G F+ +  
Sbjct: 518 EYNKAMESTLTAFYTPKVVI--------DNIYTKLIEFGFKEGRILEPSCAVGNFIGNLP 569

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +               +G EL+  +  +               +   ++  Q     +
Sbjct: 570 KEL----------DSSQVYGVELDNISGNIAK-------------QLYPQSEIQVKGFEE 606

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
             F+   F   + N PFG     +   +++E+                  + L   +   
Sbjct: 607 TNFSNNFFDIAIGNVPFG-----NFKILDREYDR---------------YNFLIHDYFFA 646

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       GG  A + SS  L        +  +R++L E   +   V LP  +F      
Sbjct: 647 KTIDKVKSGGIIAFITSSGTL-----DKKDKSVRKYLGERCELLGAVRLPNSVFKGVAGA 701

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTS-IRNEGKKRRIINDDQRRQIL 453
            + + +  L        R K+Q ++    +       G K      D    I+
Sbjct: 702 EVTSDILFLKK------RDKIQELDNETWYEIAEDKNGIKYNKYFVDNPEMII 748


>gi|258545501|ref|ZP_05705735.1| methylase [Cardiobacterium hominis ATCC 15826]
 gi|258519201|gb|EEV88060.1| methylase [Cardiobacterium hominis ATCC 15826]
          Length = 933

 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 43/148 (29%), Gaps = 33/148 (22%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHH----------------KIPPILVPHGQELEPET 251
              DP CG G FL  A   +                       +   I   HG EL+   
Sbjct: 367 RFLDPACGCGNFLVVAYRELRRLEDEIIGELYGENQLLDIATMQRVHIGQFHGIELDEYP 426

Query: 252 HAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
             +    M +   + +                  S  I   + L+ +     +  Y   N
Sbjct: 427 AQIAKVAMWLTDHQCNLATAARFGETRPTIPLADSAEIINANALTTEW---PQADYIFGN 483

Query: 299 PPF-GKKWEKDKDAVEKEHKNGELGRFG 325
           PPF G +W       + E    + G+FG
Sbjct: 484 PPFIGHQWRSTAQQADVEAVFPKNGKFG 511


>gi|116242665|sp|P14385|MTTA_THEAQ RecName: Full=Modification methylase TaqI; Short=M.TaqI; AltName:
           Full=Adenine-specific methyltransferase TaqI
 gi|149242148|pdb|2IBS|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position
 gi|149242149|pdb|2IBS|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position
 gi|149242156|pdb|2IBT|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position And An Abasic Site Analog At The
           Target Base Partner Position
 gi|149242157|pdb|2IBT|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing 2-Aminopurine At
           The Target Position And An Abasic Site Analog At The
           Target Base Partner Position
 gi|157835261|pdb|2JG3|A Chain A, Mtaqi With Baz
 gi|157835264|pdb|2JG3|D Chain D, Mtaqi With Baz
 gi|160285562|pdb|2IH2|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing
           5-Methylpyrimidin- 2(1h)-One At The Target Base Partner
           Position
 gi|160285565|pdb|2IH2|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing
           5-Methylpyrimidin- 2(1h)-One At The Target Base Partner
           Position
 gi|160285571|pdb|2IH4|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
           Target Base Partner Position
 gi|160285574|pdb|2IH4|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing Pyrrolo-Dc At The
           Target Base Partner Position
 gi|160285579|pdb|2IH5|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Base Partner Position
 gi|160285650|pdb|2NP6|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position
 gi|160285653|pdb|2NP6|D Chain D, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position
 gi|160285658|pdb|2NP7|A Chain A, Crystal Structure Of The Adenine-Specific Dna
           Methyltransferase M.Taqi Complexed With The Cofactor
           Analog Aeta And A 10 Bp Dna Containing An Abasic Site
           Analog At The Target Position And Pyrrolo-Dc At The
           Target Base Partner Position
          Length = 421

 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 57/206 (27%), Gaps = 44/206 (21%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           L+    +          TP +VV    +L   P              + +P C  G FL 
Sbjct: 6   LLSLPSNSAPRSLGRVETPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLR 55

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
                                 G E++P+   +                  ++ I     
Sbjct: 56  AFREA---------HGTAYRFVGVEIDPKALDL---------------PPWAEGILADFL 91

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFL 339
           L +    G+ F   L NPP+G   E  K  +    K  +              ++   FL
Sbjct: 92  LWEP---GEAFDLILGNPPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFL 147

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPL 365
                 L+     GG    V+ ++ L
Sbjct: 148 EKAVRLLKP----GGVLVFVVPATWL 169


>gi|46401635|ref|YP_006479.1| DarB [Enterobacteria phage P1]
 gi|33338662|gb|AAQ13985.1| DarB [Enterobacteria phage P1]
 gi|33338771|gb|AAQ14093.1| DarB [Enterobacteria phage P1]
          Length = 2255

 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 62/388 (15%), Positives = 117/388 (30%), Gaps = 82/388 (21%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            ++ TP+ +      ++      +            +P+ GTG F             + 
Sbjct: 89  SEYYTPKPIAEGVWEIMKLYGADVGNT--------LEPSAGTGVF-------------NE 127

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
             P   V    E+   +  +     L+         + S  I     L+        F +
Sbjct: 128 TKPVGTVMTATEISSVSGRI---NQLLH-------PEDSVQISPFEQLAV-STPNDSFDH 176

Query: 295 CLSNPPFG--KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            + N PFG             +E   G                  F++ + +K++    G
Sbjct: 177 VVGNVPFGGRDNTRNIDKPYAEETDMGSY----------------FMLRMLDKIKP---G 217

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL-WILS 411
           G    IV  S       +GS    +R  L           LPT  F     +T +  +L 
Sbjct: 218 GFMCVIVPPSIV-----SGSNMKRLRLRLSRKAEFLGAHRLPTGTFDANGTSTVVDVVLM 272

Query: 412 NRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYR 471
            +   E   K+ L++ + L ++         ++               E      +   +
Sbjct: 273 RKHPAEMAEKIPLVHESTLESA--------NVLWPTFISG-----KWFEKDGRRFVHGTQ 319

Query: 472 TFGYR-RIKVLRPLRMSFILDKTGLAR-----LEADITWRKLSPLHQSFWLDILKPMMQQ 525
             G++ RI+V    R    +D   L        E+ I W  L     S   D++     +
Sbjct: 320 EKGFQGRIEV----RADGQIDNQALKAKLIHCFESRIDWYLLDMAEPSPTADVVDEGEMR 375

Query: 526 IYPYGWAESFVKESIKSNEAKTLKVKAS 553
           +    W +      I+S+  K LK+  +
Sbjct: 376 LINGVWQKYAGGRWIESDAGKELKIDVA 403


>gi|90968656|gb|ABE02417.1| BsrGI methyltransferase [Geobacillus stearothermophilus]
          Length = 648

 Score = 44.2 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 63/203 (31%), Gaps = 19/203 (9%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
           F+    + + ++   L +                +  +  +YE +I R   ++     ++
Sbjct: 169 FNLLQELNKFDEINNLQEFISI----------HNNDNIKQMYEIIIPR---QLRHALGEY 215

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP     LA   + +  +   KE     +T  DPTCG+G FL   +  +          
Sbjct: 216 YTPD---WLALYTIENVIELSKKEVEEFNKTYLDPTCGSGTFLFKTIQRLRKSDIKLNK- 271

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLES--DPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
            I    G ++ P          LI  ++   D               S  L   K     
Sbjct: 272 IIYSVRGFDVNPIAVLTAKTNYLISIIDLIKDKTVINLPVYNYDVINSPILKENKLLSVD 331

Query: 296 LSNPPFGKKWEKDKDAVEKEHKN 318
           ++N  +       KD   K  K 
Sbjct: 332 INNVIYNIPLSILKDEHFKTFKK 354


>gi|14669432|gb|AAK71920.1|AF097471_1 endonuclease and methylase LlaGI [Lactococcus lactis]
          Length = 1570

 Score = 44.2 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 85/309 (27%), Gaps = 51/309 (16%)

Query: 115  FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
             E   F+     LE    LY+         +       +++  +Y+   +      +E  
Sbjct: 809  LEKAGFAKEQENLEP---LYESV-RMRAEGIEKAEDKQKIIVTLYDKFFKTAFKATTERL 864

Query: 175  EDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS- 232
                TP +VV      + D     F K        + DP  GTG F+   + ++ +    
Sbjct: 865  GIVFTPIEVVDFIVHSVDDVLKKHFGKSLASKDVHILDPFTGTGTFIVRTLTYLKEQMDA 924

Query: 233  ------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS---KNIQQ----- 278
                        +   H  E+   ++ +    +     E +   +     + I       
Sbjct: 925  GEISLSDITRKFMKELHANEIVLLSYYIAAINIEATFDEINGEEEGYVPFEGIVLTDTFE 984

Query: 279  ----GSTLSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                  TL  D F                  + NPP+ K    +       +KN E  R 
Sbjct: 985  STETEETLDDDYFGTNDERLKRQQEVPITAIIGNPPYSKGQSNE----NDNNKNIEYPRL 1040

Query: 325  GPGLPKI----SD-----GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
               +       S      G     +          N  G    V + S + +  A     
Sbjct: 1041 FKSIADSYVKNSKTTSVLGMYDSYVLSIRWASNRLNDKGVIGFVSNGSYIDSQSADG--- 1097

Query: 376  EIRRWLLEN 384
             +R+ L + 
Sbjct: 1098 -LRKSLFKE 1105


>gi|91203429|emb|CAJ71082.1| similar to type IIS restriction/modification enzyme; site-specific
           DNA methyltransferase (adenine specific) [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1268

 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 63/211 (29%), Gaps = 28/211 (13%)

Query: 89  STLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLE----------KAGLLYK 135
             L     R  +   I SFSD   N   + ++  F+     ++              +Y 
Sbjct: 405 KELDDDGKRKRIR--IDSFSDREDNVLEVPDELFFNEKGVDVDLSRIYSSSKKNKEKVYG 462

Query: 136 ICK-----NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSE----VSEGAEDFMTPRD 182
           I        F+  E  P          ++  ++E+L+  +  E      +    F TPR+
Sbjct: 463 IIDILNSYKFTVAENTPIEEEIALDPELLGKVFENLLANYNPETQTTARKQTGSFYTPRE 522

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +V+      L         S   + +    + G       +        +      +   
Sbjct: 523 IVNYMVDESLLAYLKQSLSSCHDVPSRSSVSAGHSVPFCHSERSEESNNTDKNEERLRDL 582

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
                 P       AG+L++ +++    D +
Sbjct: 583 LSYSENPNPFNTEEAGVLVKAIDTCKILDPA 613


>gi|83956395|ref|ZP_00964819.1| adenine specific DNA methyltransferase [Sulfitobacter sp. NAS-14.1]
 gi|83839389|gb|EAP78573.1| adenine specific DNA methyltransferase [Sulfitobacter sp. NAS-14.1]
          Length = 1046

 Score = 43.8 bits (102), Expect = 0.085,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 93/307 (30%), Gaps = 79/307 (25%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT---------- 208
           YE  +  +     +    + TP  VV+     + +     F  + G+  T          
Sbjct: 300 YETFLAAYNPAKRKARGVWYTPESVVNFIVRAVDEVLQTEFGLADGLADTSKVVIDWETG 359

Query: 209 -------------------LYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPIL 240
                              + DP  GTG FL + +  +         A    + +   I 
Sbjct: 360 EFNKKGKPVTIKKEVHRVQILDPATGTGTFLAEVIKQIAPRVQDIAPAMWSKYIEDDLIP 419

Query: 241 VPHGQELEPETHAVCVA--GMLIRRLESDPRRDLSK-NIQQGSTLSKDLFTGKRFHY--- 294
             HG EL   ++A+C     M++  L   P +   + ++   ++L +     +   +   
Sbjct: 420 RLHGFELLMASYAMCHMKLDMILTELGYKPAKAPPRLSVYLTNSLEEGEPANQTLPFTQW 479

Query: 295 -------------------CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                               + NPP+        +   ++    +  R   G+P    G 
Sbjct: 480 LSREAKGANTIKRDMPIMCVVGNPPYSIMSG---NLTAEQVSLVDAYRSVDGVPIKEKGM 536

Query: 336 MLFLMHL---------ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
           + F  ++          ++  +  NG G    + S   L      S    +R  LLE   
Sbjct: 537 LQFEKNINNDYIKFLSLSERLISSNGFGVLGFITSHGYL----KSSSFRGLRAHLLETFH 592

Query: 387 IEAIVAL 393
              ++ L
Sbjct: 593 DVRVIDL 599


>gi|291337005|gb|ADD96528.1| hypothetical protein [uncultured organism MedDCM-OCT-S11-C29]
          Length = 3493

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 71/253 (28%), Gaps = 59/253 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              +            T  +V+               ++       + +P  G G F    
Sbjct: 991  EEYRRASGSILNAHYTSDEVIGEMWE--------GIRKLGFSGGRVLEPGAGVGHFFGLM 1042

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             N +A               G EL+  +  +     L  + +   +     NI + S   
Sbjct: 1043 PNDLA---------GKSHLTGVELDSISGRILAK--LYPQAKIHQKGFEKANIAKAS--- 1088

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                        + N PF +    DK                   PK S  +  FL    
Sbjct: 1089 --------MDLIVGNVPFHQDGPIDK-----------------AYPKASLHNYYFL-RGI 1122

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            + L+     GG    + S S + N  +     + R WL E   +   + LP D F     
Sbjct: 1123 DLLKP----GGLMVAITSDSTMDNDVS----KKSREWLAERADMVGAIRLPNDAFAKNAN 1174

Query: 401  TNIATYLWILSNR 413
            T + T + I   +
Sbjct: 1175 TQVTTDILIFRKK 1187


>gi|254487192|ref|ZP_05100397.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101]
 gi|214044061|gb|EEB84699.1| N-6 DNA Methylase family protein [Roseobacter sp. GAI101]
          Length = 553

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 77/247 (31%), Gaps = 43/247 (17%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R F S   +    F T + +  L            +        T+ +P+ G  GFL  
Sbjct: 1   MRTFDSRRKKDLGAFYTHQGLTDLIC---------AWSVQTPET-TVLEPSFGGCGFLRS 50

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
             + +A  GS   I      +G +++            +   +   +    +   +G  L
Sbjct: 51  TRDRLAKIGSTSSISQ---IYGCDIDTRAF--------LLLSDVFEQPVDLERYHEGDFL 99

Query: 283 --SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                    K F   + NPP+       +       +         GL      S+    
Sbjct: 100 DQRFPSSWPKTFDAVVGNPPY----LPYRKIDVSRRERVLDQLKDLGLTLDRRASL--WA 153

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNG--------------RAGSGESEIRRWLLENDL 386
           +         + GGRAA VL SS L+                   + E + R++LLE   
Sbjct: 154 YFVALSIPFTSTGGRAAWVLPSSFLYANFSAALRSFITENFEEVRAFELKERQFLLEGTE 213

Query: 387 IEAIVAL 393
            + +V L
Sbjct: 214 EKTVVLL 220


>gi|57506000|ref|ZP_00371924.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195]
 gi|57015800|gb|EAL52590.1| helicase, SNF2 family [Campylobacter upsaliensis RM3195]
          Length = 1969

 Score = 43.8 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 74/509 (14%), Positives = 136/509 (26%), Gaps = 91/509 (17%)

Query: 50  PTRSAVREKYLAFG---GSNIDLESFVKVAGYSFYNTSEYSL--------STLGSTNTRN 98
            T+    E+   F    G  I  ++   +    FY T  + L        + L +     
Sbjct: 70  ETKQKSFEQKSNFELTMGYGISNDNKNLLPKIDFYKTQSFDLGGAKTRAENNLKALELAL 129

Query: 99  NLESYIASFSDNAKAIFEDF----DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
            +       +   + I   +      +S     +    L  +    S  +L         
Sbjct: 130 TITKQNRYATQEEQEILAKYSGFGGLNSAFKDADFNTRLKTLLDENSSHKLESAET---- 185

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTC 214
                      +   +S     + T      L    +    +    ++    + + +P+C
Sbjct: 186 -----------YARLLSSSYNAYYT----NDLIIDTIYQGLEQFGLKNTSFKKEILEPSC 230

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           G+G FL            H          G ELE  +  +    +L              
Sbjct: 231 GSGNFL------------HRGDKSSYNFTGVELEKHSAIIA--NLL------------HP 264

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
           N +  +   ++    K+F   + NPPFG+   KD +++                      
Sbjct: 265 NSKIINQSYENFAENKKFDAIIGNPPFGQDKVKDSNSLAHNQTLDNY------------- 311

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE--SEIRRWLLENDLIEAIVA 392
              F +     L+      G  A V+ +  L N +    +     R   L        V 
Sbjct: 312 ---FAIKSLENLKDK----GILAFVMPTGFLDNNQDKHLDLIKSARGKFL------GAVR 358

Query: 393 LPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
           LP  +F          I+  +K  E   K  L N          E       N    ++I
Sbjct: 359 LPNSVFKENGTEVNTDIIFLQKEPEFIEK--LENGKLKKVKNEIESMPYVTYNATLNQEI 416

Query: 453 LDIYVSRENGKFSRMLD-YRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH 511
            ++Y   E        D   +F      +  P  +            +     +      
Sbjct: 417 QNLYDREEKNINVDKTDFISSFKISSYFIDNPQNILGKQVIEKNQFGDYKAVVKDDGRDL 476

Query: 512 QSFWLDILKPMMQQIYPYGWAESFVKESI 540
                + +K + Q IY Y   E   K   
Sbjct: 477 AVALQNFVKTLPQNIYEYRPNEQKEKLRF 505


>gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocardia farcinica IFM 10152]
 gi|54019339|dbj|BAD60707.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 1653

 Score = 43.8 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 59/240 (24%), Gaps = 30/240 (12%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDP 212
            V++ +YE   R    + SE      TP +VV              F          + DP
Sbjct: 866  VIAELYEKFFRLGFRKQSEALGIVYTPVEVVDFILHAADQASRDAFGRGLTDQDVHILDP 925

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG FLT  +                  H  E+    + +    +      I   E+ 
Sbjct: 926  FTGTGTFLTRLLQSGLITPKDLARKYAGELHANEIMLLAYYIAAVNIETTYHAILGKEAA 985

Query: 268  PRRDLSKNIQQGSTL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKD 308
                  + I    T     + D      F               +  + NPP+       
Sbjct: 986  AEYSPFEGIVLADTFQITENGDSLDSMIFPQNNERITRQNATPINVVIGNPPYSVGQTSA 1045

Query: 309  KDAVEKEHKNGELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSS 363
             D            R        S   + + L+   +             G  A V +  
Sbjct: 1046 NDLNANISYPTLDARIADTYAARSTGTNKNSLYDSYLRAFRWATDRIGNKGIVAFVSNGG 1105


>gi|170757225|ref|YP_001780890.1| restriction endonuclease family protein [Clostridium botulinum B1
           str. Okra]
 gi|169122437|gb|ACA46273.1| restriction endonuclease family protein [Clostridium botulinum B1
           str. Okra]
          Length = 741

 Score = 43.8 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 53/172 (30%), Gaps = 20/172 (11%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135
             F N  +  L ++   N +     YI     +     +  DF      L       L K
Sbjct: 92  LVFNNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNLFYRYNIFLNK 144

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +G +    +     +  IYE +I     E  +    F TP  ++      +    
Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
              F         L D + G G F+  A + +    +   I  +   + Q +
Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE-NIQNLQEKYKQNI 245


>gi|311741041|ref|ZP_07714866.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311303843|gb|EFQ79921.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 944

 Score = 43.8 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 45/183 (24%), Gaps = 41/183 (22%)

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH----------- 233
            L  +                     DP CG+G FL  A   +    +            
Sbjct: 367 RLIASRSTTVKALREFRDSLADYAFLDPACGSGNFLIVAYRELRKIETDLIVAIRRKEGT 426

Query: 234 ----------HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL----------- 272
                      +   I   +G E+      +    M +   +++                
Sbjct: 427 LDDMALDVSFEQKLSIGQFYGIEVNWWPARIAETAMFLVDHQANKELAQRIGAAPERLPI 486

Query: 273 --SKNIQQGSTLSKDL----FTGKRFHYCLSNPPFG---KKWEKDKDAVEKEHKNGELGR 323
             + +I   + L+ D        K       NPPF     K +  K+ +++       G 
Sbjct: 487 SITAHIHHANALAVDWSLVVPEPKGETLVFGNPPFIGQYTKTKGQKEDMKRVWGKDYDGY 546

Query: 324 FGP 326
              
Sbjct: 547 LDY 549


>gi|325857461|ref|ZP_08172516.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A]
 gi|325483171|gb|EGC86151.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A]
          Length = 489

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 94/300 (31%), Gaps = 47/300 (15%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +        +    F T   +     ++     +            L D   G+G    
Sbjct: 16  FVSSNAKADRKKYGQFFTSESIAVFMASMFHIDLEKDSL-------RLLDAGAGSGILSV 68

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             ++ + + G    +  +   + +++           +L + L S      +  I+  + 
Sbjct: 69  ALLSRIREIGYTGSVKLVCYENDEKVLG---------VLAKNLASVKDSHFTFEIRHENY 119

Query: 282 LSKDLF----------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
           ++   F           G+ +   + NPP+ K  +   DA+  +           G P  
Sbjct: 120 ITSQAFGHNPSLFGRRNGETYDLIIGNPPYKKIPKNAADAIHMKEVC-------YGAP-- 170

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-- 389
            +   LF     + L    N GG    V+  S  +   A    +  R++LL +  I    
Sbjct: 171 -NLYFLFWAMGIHNL----NEGGELVYVIPRS--WTSGAY--FARFRKYLLSHCAITDIH 221

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA-TDLWTSIRNEGKKRRIINDDQ 448
           I      +F    +     I+  RK   R  K+++ ++ T  +  +R        +  D 
Sbjct: 222 IFGSRDKIFDGETVLQETMIIKVRKGCTRPSKIRISSSDTSDFLDLRRFDVDYNTVVADN 281


>gi|257470287|ref|ZP_05634378.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Fusobacterium ulcerans
           ATCC 49185]
 gi|317064498|ref|ZP_07928983.1| adenine-specific DNA methylase [Fusobacterium ulcerans ATCC 49185]
 gi|313690174|gb|EFS27009.1| adenine-specific DNA methylase [Fusobacterium ulcerans ATCC 49185]
          Length = 477

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 39/269 (14%)

Query: 206 IRTLYDPTCGTGGFL-TDAMNHVADCGS-----HHKIPPILVPHGQELEPETHAVCVAGM 259
            + + + +CG G  L      ++            K       +G EL+ E ++ C+  +
Sbjct: 37  GKKILENSCGDGEILKVIVNKYINSLLKMKTLDEIKFGLENDIYGIELDKEHYSTCLKNL 96

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
               + +      + N +  +  +      K+F Y + NPP+   ++   D + KE K  
Sbjct: 97  ---DMIAGTYGIRNVNWKVFNENALKKEWDKKFDYIIGNPPY-ISYKDINDTIRKELKEK 152

Query: 320 E----LGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
                 G+F             F+    N L       G+   ++ +S   N     GE 
Sbjct: 153 YTSCKKGKFDYY--------YAFIEESLNCLSSF----GKFVYLIPNSIFKN---EFGE- 196

Query: 376 EIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI 434
           E+R+ +L +  +  IV   +  +F   +  + + I   RK ++        N   +    
Sbjct: 197 ELRKIILPS--LSKIVDYKSHKIFKNVSTTSAILICDKRKKKKSMLYFDYENKNQIKILK 254

Query: 435 RNEGKK------RRIINDDQRRQILDIYV 457
            N  KK      +  +  D  ++  D + 
Sbjct: 255 ENLNKKWIFVEEKNDLLKDNLKKFGDYFK 283


>gi|227524365|ref|ZP_03954414.1| adenine-specific methyltransferase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088596|gb|EEI23908.1| adenine-specific methyltransferase [Lactobacillus hilgardii ATCC
           8290]
          Length = 356

 Score = 43.8 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 96/336 (28%), Gaps = 51/336 (15%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
             F++    +   +     ++  +S I           +  D ++     E A  + +I 
Sbjct: 29  ERFFSVLNETTEIVQKQKDQSYFDSLIE-----VLDTVQSNDVNALDLTDENAKKVSRIY 83

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             F       D      +    +  I +    V     ++    D +      ++     
Sbjct: 84  SKFDR-----DKYDSETLRKAIQMAILK-AIRVDRIQANYQITPDTIANIVGYIISGIFN 137

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K       ++ DP  GTG  LT   N +        I       G E +     +   
Sbjct: 138 GQKR-----LSMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIENDDAMFELAAG 187

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
              I+ + ++                         +                     E+ 
Sbjct: 188 SFDIQHIHAELF-----------------HEDAIQNVLAPVVDIAVSDLPVGYYPIDENT 230

Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            G   R        +DG S +  + +   ++    GG      L  S +F     S   +
Sbjct: 231 KGFNTR-------SNDGHSYVHHLLIEFAMDHVKKGG--YGFFLVPSQIF---KTSEAKQ 278

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           + +W+  N  ++A++ LPT+LF        + IL N
Sbjct: 279 LLKWMQGNVYLQALLNLPTELFQNKASQKAIMILQN 314


>gi|38640013|ref|NP_943968.1| hypothetical protein Aeh1p090 [Aeromonas phage Aeh1]
 gi|33414702|gb|AAQ17745.1| hypothetical protein Aeh1ORF084c [Aeromonas phage Aeh1]
          Length = 415

 Score = 43.8 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 69/196 (35%), Gaps = 25/196 (12%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN--IYEHLIRRFGSEV 170
            +FE FD       L+    + ++ +++            +V+ +  ++   I R   + 
Sbjct: 242 ELFEKFDM------LDIRPRVQEVIEDY----YGGKRHKTQVVGDTRLFTDKIER---DR 288

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +   +F TP ++V+         D            T ++P+CG G  L   +  + + 
Sbjct: 289 QKKTAEFFTPIELVNQMLDYTDIDDANSSS-------TFFEPSCGDGNILEGIVKRMLEA 341

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTG 289
           G +       +   + +            L++ L  + R  +   I   +TL + D   G
Sbjct: 342 GQNAGTIVSRIYACEYMLDN--RNAAIERLVKLLGEEYRTRIESQIAYCNTLDETDTSDG 399

Query: 290 KRFHYCLSNPPFGKKW 305
           +++   L +  +    
Sbjct: 400 RKYPDWLKDTMWTLDI 415


>gi|34762209|ref|ZP_00143216.1| Type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27888170|gb|EAA25229.1| Type I restriction-modification system methyltransferase subunit
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 247

 Score = 43.8 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 59/217 (27%), Gaps = 31/217 (14%)

Query: 47  ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
             E +   + +K           E F+      FY  +  + + +G ++     +  +  
Sbjct: 19  VREASIKNIVKKIQDLDHKYNYDEIFLDWVRCMFYTYAN-TCNKVGYSDREEKFKRIVDK 77

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRF 166
                  +F                      +  + + +  +      +  IY  L    
Sbjct: 78  HGKEVIEVF---------------------LECHAELVMLFEKEIYDYLGKIYHEL---- 112

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
               ++    F TP  +  L     ++           +   + D  CG+G  +   +  
Sbjct: 113 -GIHNKMKGQFFTPFHLSKLMAETRVNELIKELNSKKRI--KITDAACGSGCLMLGILAV 169

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
           + +          +  +  +L+  T  +    + I  
Sbjct: 170 LKE--KGINYQKRIFINCSDLDENTIQMAYVQLTIVG 204


>gi|239624277|ref|ZP_04667308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520663|gb|EEQ60529.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 2585

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 69/265 (26%), Gaps = 68/265 (25%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +          T   V+      +              I  + +P+CG G F    
Sbjct: 1361 EEYAAARGSTLNAHYTSPTVIRAIYETVG--------RMGFEIGNILEPSCGVGNFFGML 1412

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
               +               +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1413 PEEMR----------NSRLYGVELDSISGRIAKQLYPKADITVAGFETTDRRDF------ 1456

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+   +DK   +                         
Sbjct: 1457 -------------YDLAIGNVPFGQYQVRDKAYDKLNFSIHNY----------------- 1486

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                  K       GG  A V            + +S +RR+L +   +  ++ LP D F
Sbjct: 1487 ---FFAKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGVIRLPNDAF 1538

Query: 399  -FRTNIATYLWILSNRKTEERRGKV 422
                       I+  +K +     V
Sbjct: 1539 KKNAGAEVVSDIIFLQKRDRPLDIV 1563


>gi|215401130|ref|YP_002332385.1| putative methyltransferase [Staphylococcus phage phiSauS-IPLA35]
 gi|215260481|gb|ACJ64611.1| gp22 [Staphylococcus phage phiSauS-IPLA35]
          Length = 229

 Score = 43.8 bits (102), Expect = 0.097,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 71/215 (33%), Gaps = 19/215 (8%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           S     I +  D      ++    +LY   +     +   + +        Y+     F 
Sbjct: 2   SSMINDILDIKDSYQAPQKIMD--MLYGDIEE--RNKTFMEFLKAYKNDVNYDWFHEYFQ 57

Query: 168 SE--VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
            E    +  +   TP+ +  L   L+ D                Y+P  GTGG + +  N
Sbjct: 58  DEHANRKKHKQDFTPKSISKLLVELVSDKQGD-----------YYEPAAGTGGIVIEKWN 106

Query: 226 HVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLESDPRR-DLSKNIQQGSTLS 283
           +     S     P +  +  +EL   T    +  M+IR +     + D+      G+   
Sbjct: 107 NDRMQHSPFDYLPSMYFYIAEELSDRTIPFLLFNMIIRGMNGLVVQCDVLTREAYGAWFI 166

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
           ++          L+  P+ +  EK+ +    EH+ 
Sbjct: 167 QNDKNDHLGFSSLNRLPYTEDIEKELNIKFVEHRY 201


>gi|317178356|dbj|BAJ56144.1| Type IIG restriction-modification enzyme [Helicobacter pylori F30]
          Length = 366

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 12/180 (6%)

Query: 42  RRLECALEPTRSA-----VREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L+ AL   +       + + +  +    +  E F      +   T    L+ L     
Sbjct: 173 RYLKDALIKYQEKTQVSSIFKNFKEYLYEELSFEDFSDALAQTL--TYSLFLAKLNHPFE 230

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG-LLYKICKNFSGIELH----PDTVP 151
           + NL++  +S  +N   I E  DF   +  +++   LL +I  + + +++          
Sbjct: 231 KINLDNVRSSIPENFAVIREMADFLKKLDGIKEIQWLLNEILSSINHVDMDSILKDLNDD 290

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
                + YE  +  +  ++ E    + TP  VV      L       FK++P  +++  D
Sbjct: 291 KDPYLHFYETFLSAYDPKLRESKGVYYTPDSVVKFIINALDSSLKTHFKDAPLGLKSALD 350


>gi|329768016|ref|ZP_08259527.1| hypothetical protein HMPREF0428_01224 [Gemella haemolysans M341]
 gi|328838501|gb|EGF88109.1| hypothetical protein HMPREF0428_01224 [Gemella haemolysans M341]
          Length = 300

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 101/313 (32%), Gaps = 53/313 (16%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHPD------TVPDRVMSNIYEHLIRRFGSEVS 171
           F     +   +  GL +    N+  +E   D            +   Y+ L+ +   E++
Sbjct: 9   FKIDKQVEENKGGGLYFDSLVNYLTLENDEDYFDIVDNFSKEDIKKAYQFLLLKALKELN 68

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 +TP +V+ +  + +L+              ++ D   G+G FL +         
Sbjct: 69  -NPSYDITP-EVITMYASHILE------CLYNNEKISVADFASGSGNFLINLAALSKGDY 120

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
               +         +         +  +L   +E          I     L       K+
Sbjct: 121 ELTSVDVDNNYARLQQN-------IFNLLETNVE----------IINQDALKP--LNIKK 161

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               +S+ PFG   ++D     K                 S  ++LF+   AN L     
Sbjct: 162 QDVIISDVPFGYYADEDNSLNYKLCSAEGY----------SLNALLFIEQAANYLNDS-- 209

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    L        E   +++L E+  + A++ LP ++F   +    + +++
Sbjct: 210 --GVGVLVVPKKVL------ELEDNFKKFLEEDINLNAVITLPDEMFKNASQQKAIILIT 261

Query: 412 NRKTEERRGKVQL 424
            +   +   +V L
Sbjct: 262 KKGQTKLPNQVFL 274


>gi|290243013|ref|YP_003494683.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945518|gb|ADC73216.1| helicase domain protein [Thioalkalivibrio sp. K90mix]
          Length = 1722

 Score = 43.8 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 79/255 (30%), Gaps = 58/255 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  +   + + TP  +V L  +                   + +PT G+G F+    
Sbjct: 81  EYASMRASVLDAYFTPESLVRLMWS--------GLARLGFAGGRVLEPTVGSGAFIEHVP 132

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + D          +   G E++  +  +  A          P   + +   +  +L  
Sbjct: 133 DALRDH---------ITVTGIEIDAVSARLAKA--------LYPGHYIVEKPFEAVSL-- 173

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                + F   + NPP+  +   D+ A + +                          +A 
Sbjct: 174 ---QDEAFDAAIGNPPYDARTVFDRTAKKLKGSIHTF-------------------TMAK 211

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            ++     GG  A V+S   L       G  + R WLL++  + A   LP ++F      
Sbjct: 212 AMKKV-RAGGVGAFVVSRYAL------DGFDDARDWLLDHTRLLAAYRLPVEVFKDAGAE 264

Query: 405 --TYLWILSNRKTEE 417
             T +  L       
Sbjct: 265 VITDVVFLQRVDEAN 279


>gi|328949537|ref|YP_004366873.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
 gi|328449861|gb|AEB15576.1| SNF2-related protein [Treponema succinifaciens DSM 2489]
          Length = 2135

 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 48/238 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
           +F TPR++V     +                 T+ +P+ GTG F            +  +
Sbjct: 75  EFYTPRNLVAKVWGIA--------DHYAPNAVTVLEPSSGTGRF------------ADGR 114

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRFHY 294
                  H ++             ++    +       K     +    K  +   ++  
Sbjct: 115 PKNNFTMHEKDEVS-----ARINKILHPNANIIEGAFQKQFFDENERFKKIGYQLPKYDL 169

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            + NPP+G       D  +   +  + GR+             F+      L+       
Sbjct: 170 VIGNPPYGT----YNDKYKGLGEGKDFGRYEEY----------FIQKGLESLKD---ENS 212

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
               V+ S  L         +      L  +LI+A   LP   F  T + T + +L  
Sbjct: 213 LLVFVVPSGFLRTVADKPKTAIA----LTGELIDA-YRLPEGTFPTTQVGTDIIVLKK 265


>gi|193297458|gb|ACF17793.1| putative helicase/DNA methylase [Helicobacter pylori]
          Length = 2609

 Score = 43.8 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 117/413 (28%), Gaps = 76/413 (18%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 721  EFRRAYSSTRDAYYTP----KLVIDSIYQGLDQLGFNNDNHQKEIFEPSLGTGKFI---- 772

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P +  +                 L  N    +T  +
Sbjct: 773  -------AHAPSDKNYRFVGTELDPISANISK--------------FLYPNQVIQNTALE 811

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G       +  E  +++                   FL     
Sbjct: 812  NHQFYQEYDAFVGNPPYGSHKIYSSNDKELSNESVHNY---------------FLGKAIK 856

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+  S  F         ++R  + +N      + LP  +F  T   
Sbjct: 857  ELKDD----GIGAFVV--SSWFMDGKNP---KMREHIAQNATFLGAIRLPNSVFKATGAE 907

Query: 405  TYLWILSNRKTEERRGKVQLINATDLW----------TSIRNEGKKRRIINDDQRRQILD 454
                I+  +K  +         A   +          T    +  +        + +I++
Sbjct: 908  VSSDIVFFKKGVDGATNQSFTKAMPYYDKIIDSLDDDTLFALQNNRFDSFTPSDQLKIVN 967

Query: 455  I---YVSRENGKFSRML---DYRTFGYR-------RIKVLRPLRMSFILDKTGLARLEAD 501
                +   +  K  R     D   FGYR       +  + +    +  L++  L      
Sbjct: 968  AIASHFGFKQEKLQRWYEKIDTANFGYREQDYKIIKGFIDKVGENNINLNEQTLNEYFIH 1027

Query: 502  ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                 L  L         +   +QIY Y       K    S        K  K
Sbjct: 1028 HPENILGHLSLEKTRYSFEINGEQIYKYELQALEDKSLDLSQALHQAIEKLPK 1080


>gi|312902762|ref|ZP_07761966.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
 gi|310633816|gb|EFQ17099.1| N-6 DNA Methylase [Enterococcus faecalis TX0635]
          Length = 335

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 104/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFRTNIATYLWILSNRKTE-ERRGKVQLINATDLWTSIR 435
           LF        + I+ N+  + E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILIVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|167010571|ref|ZP_02275502.1| DNA-methyltransferase, type I restriction-modification enzyme
           subunit M [Francisella tularensis subsp. holarctica
           FSC200]
          Length = 103

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 11/109 (10%)

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEER 418
           +    LF  +  +    +++ LLEN  +  IV+LP  +F   + + T +        E  
Sbjct: 1   MPEGVLF--QTNNAFKNVKKELLENYNVHTIVSLPAGVFLPYSGVKTNVIFFDR---EGS 55

Query: 419 RGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
              +        +        K + +  +   + L+I+ S +       
Sbjct: 56  TTDIFYYEVNPPYKLT-----KNKPVQFEHFAEFLEIWQSHKLTDIVNP 99


>gi|297529054|ref|YP_003670329.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
 gi|297252306|gb|ADI25752.1| N-6 DNA methylase [Geobacillus sp. C56-T3]
          Length = 329

 Score = 43.8 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 43/256 (16%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  V      L+             +   + DP  GT   LT  +N +    +   
Sbjct: 93  HQMTPDAVSLFLAYLV------REFTRSHLALKILDPAVGTANLLTAVLNGLRGKQAAS- 145

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +++     +      +        +     +    +L       +     
Sbjct: 146 -------YGSDVDDLLVKLAYVNANL--------QKHPVQLFNQDSLRP--LFVEPVDVV 188

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + + P G  +  D D   +     + GR        S    LF+       +     GG 
Sbjct: 189 VCDLPVG--YYPDDDNAARFALKAKEGR--------SYAHHLFIEQSLRYTKE----GGY 234

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              ++ +  LF+       +E  +   E  +++ ++ LP  +F     A  + IL  +  
Sbjct: 235 LFFLIPN-TLFSSPQAGQLNEFLK---EAAIVQGVLQLPLSMFKNDQAAKSVLILQKKGP 290

Query: 416 E-ERRGKVQLINATDL 430
             ++   V L+     
Sbjct: 291 NVKKPKHVLLVELPRF 306


>gi|20385053|gb|AAM21167.1|AF254788_2 BssSI DNA modification methyltransferase [Geobacillus
           stearothermophilus]
          Length = 1127

 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 77/257 (29%), Gaps = 38/257 (14%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            E  +      TP+ + +  T   +   +   K S   +  + D +CG G FLT    + 
Sbjct: 105 DEERKKMGAVFTPKWLANYVTKRAIYYWNENNKSS---LERVGDLSCGPGIFLTQLQKY- 160

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR------LESDPRRDLSKNIQQGST 281
                          +G +  PE   +     L+        LE           +Q   
Sbjct: 161 --------TGQNTKIYGVDSNPEYVFLAS---LLSGSEERVFLECADTLINLAPEEQCDL 209

Query: 282 LSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            S+      K +   + NPP+     K   ++   H     G +  G     +  +  + 
Sbjct: 210 FSQMYQTPSKDYDIIVGNPPYVSS--KTISSIYSNHIKELYGDYIEG-----NYDLS-VP 261

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLENDLIEAIVALPTD-LF 398
            + +  +   N G  A IV S            E   R   +LE      I+      +F
Sbjct: 262 FIVHTYKALKNNGIGALIVSSKFMHSRYGKKICELLARNTKILE------IIDFGDGQVF 315

Query: 399 FRTNIATYLWILSNRKT 415
                   + I S +K 
Sbjct: 316 KGKTTYVCVIIFSKQKP 332


>gi|317495997|ref|ZP_07954359.1| hypothetical protein HMPREF0432_00963 [Gemella moribillum M424]
 gi|316913901|gb|EFV35385.1| hypothetical protein HMPREF0432_00963 [Gemella moribillum M424]
          Length = 300

 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 106/313 (33%), Gaps = 53/313 (16%)

Query: 118 FDFSSTIARLEKAGLLYKICKNFSGIELHP------DTVPDRVMSNIYEHLIRRFGSEVS 171
           F     +   +  GL ++    +  +E         D      +  +Y+ L+ +   E++
Sbjct: 9   FKIDKQVEEAKGQGLYFEALTKYLTLENDDEYFDIVDNYDKETIRKVYQFLLLKALKELN 68

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                 +TP +V+ +  + L++              ++ D   G+G FL +    V    
Sbjct: 69  -NPSYDITP-EVITMYVSHLIE------CIYGEEKISIADFASGSGSFLINIAALVKGEK 120

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
               I         +         +  +L          ++   I     L       K+
Sbjct: 121 DFTSIDVDSNYVKLQQN-------IFNLL----------EVPAEIINQDVLKP--LNIKK 161

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               +S+ PFG   + D     K   +             S  ++LF+  +AN L     
Sbjct: 162 QDVIISDVPFGYYADGDNSLNYKLCSSEGY----------SINALLFIEQVANYLAED-- 209

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G   +V+    L        E   +++L E   + A++ LP ++F  ++ A  L +++
Sbjct: 210 --GVGVLVVPKQIL------ELEDNFKKFLEEEINLNAVITLPEEMFKNSSQAKALILIT 261

Query: 412 NRKTEERRGKVQL 424
            +  ++   +V L
Sbjct: 262 KKGQKKLPSQVFL 274


>gi|306833453|ref|ZP_07466580.1| possible endonuclease-methyltransferase fusion protein
           [Streptococcus bovis ATCC 700338]
 gi|304424223|gb|EFM27362.1| possible endonuclease-methyltransferase fusion protein
           [Streptococcus bovis ATCC 700338]
          Length = 1107

 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 79/251 (31%), Gaps = 55/251 (21%)

Query: 48  LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES--YIA 105
              T SA++E Y      +ID + F+     +++N    +L  L  +  + N+     I 
Sbjct: 256 FNATSSAIKELYGVDSDKSIDSKVFLFAT-QTYFNI---TLKILIDSFIK-NITDPATIL 310

Query: 106 SFSDNAKAIFEDF-----------------------------DFSSTIARLEKAGLLYKI 136
            F  +   I E F                             D  + +  + K   ++ +
Sbjct: 311 DFKLSWSEIIELFEGRETENSSIISNFFEIHYYEWFTYLASEDQQNIVTNIIKN--IFNL 368

Query: 137 CKNFSGIELHPDTVP-DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
            + F              V+  IY  LI     ++     ++ +P          +++  
Sbjct: 369 IQQFDLATYKLRPEEVQDVLQEIYMTLI---PEQIRHLLGEYFSP--------DWIVEHS 417

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPILVPHGQELEPE 250
                    + + + DPTCG+G F+  A+  V +                   G +L P 
Sbjct: 418 LDRIGYFGDIDKKIIDPTCGSGAFVIQALKRVLNARGNSITHEDAKKITKNIVGFDLNPI 477

Query: 251 THAVCVAGMLI 261
           +     A  ++
Sbjct: 478 SAVSAKANYIL 488


>gi|150010437|ref|YP_001305180.1| type I restriction enzyme, M subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|237708421|ref|ZP_04538902.1| type I restriction enzyme [Bacteroides sp. 9_1_42FAA]
 gi|149938861|gb|ABR45558.1| type I restriction enzyme, M subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|229457642|gb|EEO63363.1| type I restriction enzyme [Bacteroides sp. 9_1_42FAA]
          Length = 253

 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 33/160 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  +  + G +V+     F TP D+  L        + A         + + DP
Sbjct: 85  DAFGDLFMAISSKIGRQVN---GQFFTPPDICDLMVLCTDSGETAT-------GKRICDP 134

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           TCG                ++H          ++L      + V  ML+     +     
Sbjct: 135 TCG------------RLLLAYHVRHLGNYLVAEDLNHTCCLMTVCNMLVHGCIGE----- 177

Query: 273 SKNIQQGSTLSKDLFTGKRF---HYCLSNPPFGKKWEKDK 309
              +    +L  + F            +  P  ++  K++
Sbjct: 178 ---VIHHDSLFPENFMDGWMVNHTLTQTGIPTIRRMSKEE 214


>gi|325297578|ref|YP_004257495.1| helicase domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324317131|gb|ADY35022.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1657

 Score = 43.8 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 82/252 (32%), Gaps = 49/252 (19%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             S  +     F TP          +       F+E+   +R+  +P+ G GGFL  AM 
Sbjct: 88  MNSIKASVLTAFYTP----DFLIEAVAGQIHTTFRENGLQMRSFLEPSAGIGGFLPVAMG 143

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSK 284
                                    ++A+     +I  L      D +  +  G   + +
Sbjct: 144 GTH----------------------SYAIEKD--IITGLVLSLLHDEATTVTGGFEAIDR 179

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                ++F    SN PFG     D +  +   K G   +    +      +  F+  +  
Sbjct: 180 QELEHRKFDVIASNIPFGNFRVFDTEFWK---KGGIYEQATKTIH-----NYFFVKAM-- 229

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN-- 402
                 N GG  A V S           G   +R +L+ +  + + V LP  LF +T+  
Sbjct: 230 ---ELLNEGGLLAFVTSRGVADT----PGSKFVREYLVSHADLISAVRLPDTLFMQTSGI 282

Query: 403 -IATYLWILSNR 413
            + + L I    
Sbjct: 283 EVGSDLLIFQKH 294


>gi|317476133|ref|ZP_07935385.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907771|gb|EFV29473.1| hypothetical protein HMPREF1016_02368 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1658

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 75/242 (30%), Gaps = 49/242 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          +     A F ++   +RT  +P+ G GGFL  AM           
Sbjct: 98  AFYTP----KFLIDAVARQIHATFMDNGLQMRTFLEPSAGIGGFLPVAM----------- 142

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSKDLFTGKRFHY 294
                        P+T         +  L      D +  +  G  T++        F  
Sbjct: 143 -------------PDTRGYAFEKDCLTGLILSLLHDKTTTVTAGFETIADQHLEHGSFDV 189

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
             SN PFG     D +  +   K G   +    +      +  F+  +        N GG
Sbjct: 190 IASNIPFGNFRVFDAEMWK---KGGMYEQSAKTIH-----NYFFVKAM-----ELLNEGG 236

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILS 411
             A V             G   +R +L+ +  +   + LP  LF +T+   + + L I  
Sbjct: 237 LLAFVAPRGIADT----PGNKFVREYLVNHADLITALRLPDTLFMQTSGIEVGSDLLIFQ 292

Query: 412 NR 413
             
Sbjct: 293 KH 294


>gi|300021889|ref|YP_003754500.1| N-6 DNA methylase [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523710|gb|ADJ22179.1| N-6 DNA methylase [Hyphomicrobium denitrificans ATCC 51888]
          Length = 957

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 78/280 (27%), Gaps = 40/280 (14%)

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-SEGAEDFMTPRDVVHLATAL 190
               + + +                ++   LI        ++      TP  +V L    
Sbjct: 284 RFASLVEGYEDAGGQLSFWRLYSFKDLPVELISHIYQLFVTDTDSSVYTPPTLVRLMLDE 343

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------- 240
            L                + DP CG+G FL +A   +                       
Sbjct: 344 ALS--WDRIDRLMASREIVLDPACGSGVFLVEAYKRLVLHWRSRNDWAKPGVDELRTLLD 401

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-----GSTLSKDLFTGKR---- 291
             HG +LE     +    + +   ++    ++  +++       ++L K  F   +    
Sbjct: 402 RVHGIDLEAGAVELAAFSLCLALCDALEPEEIRASVKLFPKLADASLHKRCFFEAKEEAL 461

Query: 292 ----FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS--MLFLMHLANK 345
                   + NPPF                  + G+        +D     LFL      
Sbjct: 462 IKAPVGVLVGNPPFESSLTTPAAKRAYAAYVKQHGKL-------ADQQVAYLFLHEAMGM 514

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGS-GESEIRRWLLEN 384
                  GG  +++  S  L+N  AG   ES  +RW +  
Sbjct: 515 ----TAEGGVLSMIQPSGFLYNQHAGEFRESFFKRWNVRE 550


>gi|198275220|ref|ZP_03207751.1| hypothetical protein BACPLE_01379 [Bacteroides plebeius DSM 17135]
 gi|198271803|gb|EDY96073.1| hypothetical protein BACPLE_01379 [Bacteroides plebeius DSM 17135]
          Length = 1180

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 71/273 (26%), Gaps = 58/273 (21%)

Query: 66  NIDLESFVKVAGYSFYNT-SEYSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFS-- 121
             +      V  Y F+NT +E     +       N++  Y+       K   +  D    
Sbjct: 252 EGNDRLLSDVLEYLFFNTLNEKREGDIADARLGENIKIPYLNGGLFE-KDSIDKLDIDFP 310

Query: 122 -STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
            S    L     +Y    + +  +     +   ++ +I+E+L+     E ++    F TP
Sbjct: 311 YSNFKELMDFFAMYNFTIDENDPDDSEVGIDPEMLGHIFENLL-----EDNKDKGAFYTP 365

Query: 181 RDVVHLATAL-----LLDPDDALFKESP--------------------------GMIRTL 209
           +++V           L   +       P                               +
Sbjct: 366 KEIVQYMCRQSVLQYLKTHESDEQYAEPIEQLINNGIVLPVLQTKSVASRFMQLLKDVKV 425

Query: 210 YDPTCGTG----GFLTDAMNHVADCGSHHKIPP------------ILVPHGQELEPETHA 253
            DP  G+G    G L    + +    SH +                    G ++E     
Sbjct: 426 CDPAIGSGAFPMGILYVLYHAIHHLQSHAEPHGSFNSTQTKRDIIQNNIFGVDIEQGAVD 485

Query: 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
           +      +  +          N+    T     
Sbjct: 486 IARLRFWLALVVDADEPQPLPNLDYKITCGNSQ 518


>gi|329963203|ref|ZP_08300940.1| hypothetical protein HMPREF9446_02533 [Bacteroides fluxus YIT
           12057]
 gi|328528899|gb|EGF55839.1| hypothetical protein HMPREF9446_02533 [Bacteroides fluxus YIT
           12057]
          Length = 1176

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 39/353 (11%), Positives = 93/353 (26%), Gaps = 91/353 (25%)

Query: 42  RRLECALEPT-----RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
           R L   LEP       + + E+   F  +  ++    +  G  + N   +    +   + 
Sbjct: 256 RLLSDVLEPLFFGILNTKIEERETFFLKNQWNISLLKEFNGIPYLNGGLFDKDKIDELDI 315

Query: 97  RNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
                 +  S+  +    F  ++F      +++              +     +   ++ 
Sbjct: 316 -----DFPYSYFKDLMEFFSIYNF-----TIDEND-----------PDDSEVGIDPEMLG 354

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG------------ 204
           +I+E+L+     E ++    F TP+++V       +       +                
Sbjct: 355 HIFENLL-----EDNKDKGAFYTPKEIVQYMCRQSIIQYLKTHEPDEQYVEPIEELINNG 409

Query: 205 -------------------MIRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPIL- 240
                                  + DP  G+G    G L    + +    S+ +      
Sbjct: 410 IIMPILQAQSIASRFMQLLKNVKVCDPAIGSGAFPMGILYVLYHAIHHLQSYAEPHGDFD 469

Query: 241 -----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                         G ++E     +      +  +      +   N+    T        
Sbjct: 470 STKTKRNIIQNNIFGVDIEQGAVDIARLRFWLALVVDANEPEPLPNLDYKITCGN----S 525

Query: 290 KRFHYCLSNP---------PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
           +   Y L+ P           GK+  K ++    +           G  +  D
Sbjct: 526 QICRYSLNTPISDVFVEYNRIGKETAKKENKTWNDFTLENYKNLVVGYTEEHD 578


>gi|168205250|ref|ZP_02631255.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
 gi|170663156|gb|EDT15839.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
          Length = 1679

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 52/366 (14%), Positives = 104/366 (28%), Gaps = 50/366 (13%)

Query: 66  NIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDF------D 119
           N   E          +N  + ++S + + +T +     I   + N   IF  F       
Sbjct: 36  NEKHELISNSLFNFLFNNDQKTISNIKTEDTTD-----IDDSNVNVIEIFNSFVDDAEKK 90

Query: 120 FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT 179
             S I +++ + L   + K+ +          +     + + LI+   ++ +   +  + 
Sbjct: 91  IKSNINKIKDSILDLLVSKDTTSDTYSERYKDNLNAIKLVKSLIK--ANKKATTNQQKIL 148

Query: 180 PRDVVHLATALLLDPDDALFKES-----PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
            + V     +     D+   K           R++          +      +   G   
Sbjct: 149 SKYVGWGGLSNAFSEDETKLKNILENDFESAKRSVNTAFFTNAIIVKYMWKVLLRLGFEK 208

Query: 235 KIPPILVP-HGQEL---EPETH---AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                     G       P+ +    +    M I   +   +   S  I   S   +   
Sbjct: 209 GRILEPSIGTGNMFRYSNPDMYYNSKIIGIEMDILTSQIASQLLQSATIIN-SRYEETSL 267

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             + F   +SN PFG     DK+  E  +       F   + K+ D              
Sbjct: 268 KDESFDLIISNIPFGDIKIFDKEYPEFSNYYVHDYYFLKSIKKVRDK------------- 314

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 G  A V        G       EIR  + ++      + LP+  F  T + + +
Sbjct: 315 ------GIIAFVT-----STGVMDKRNQEIRELISKDCDFLGAIRLPSGSFSDTKVVSDI 363

Query: 408 WILSNR 413
             L   
Sbjct: 364 IFLQKN 369


>gi|311112122|ref|YP_003983344.1| methyltransferase [Rothia dentocariosa ATCC 17931]
 gi|310943616|gb|ADP39910.1| methyltransferase [Rothia dentocariosa ATCC 17931]
          Length = 578

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 96/287 (33%), Gaps = 57/287 (19%)

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK----DLFTGKRFHYCL 296
                ++ P   A     +L+    +   +   +N++   +L +    D   G++F   +
Sbjct: 217 HVTATDISPRALAFARFNLLL---NAPALKLDPQNLEARVSLRQGSLLDPVAGEQFDLVV 273

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
           SNPPF     +  ++ + +    +      GLP    G  + +  L  ++      GGRA
Sbjct: 274 SNPPFVITPRRADESSDDQFTYRD-----GGLP----GDDI-VSTLIRRIPEVLVPGGRA 323

Query: 357 AIVLSSSPL--FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR- 413
            ++ +        G A   ++ +R W  E+                T   +  W++    
Sbjct: 324 QMLGNWEIHRDNTGEAQPWDARLRTWFAES---------------ATGTPSEAWVIQREV 368

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
            T E   +  L +A++                   R    + Y +  +   +R +    F
Sbjct: 369 LTPESYAETWLKDASENRD----------------RDHYENTYRAYLDDFKNRNVHSIGF 412

Query: 474 GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
           G      +  LR      +T       DIT+    P+ QS    + +
Sbjct: 413 G------MLWLRRRAHTTETAPLNRFEDITYPIAQPIAQSITEAVAR 453


>gi|317181593|dbj|BAJ59377.1| hypothetical protein HPF57_0303 [Helicobacter pylori F57]
          Length = 2818

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 99/318 (31%), Gaps = 69/318 (21%)

Query: 176  DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             + TP     L    +    D L   +    + +++P+ GTG F+           +H  
Sbjct: 984  AYYTP----KLVIDSIYQALDQLGFNNDSHQKEIFEPSLGTGKFI-----------AHAP 1028

Query: 236  IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                    G EL+P +  +                 L  N    +T  ++    + +   
Sbjct: 1029 SDKNYRFMGTELDPISANISK--------------FLYPNQVIQNTALENHQFYQEYDAF 1074

Query: 296  LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            + NPP+G       +  E  +++                   FL     +L+      G 
Sbjct: 1075 VGNPPYGSHKIYSSNDKELSNESVHNY---------------FLGKAIKELKDD----GI 1115

Query: 356  AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA-TYLWILSNRK 414
             A V+  S  F     S   ++R  + +N      + LP  +F  T    T   +   + 
Sbjct: 1116 GAFVV--SSWFMDGKNS---KMREHIAQNATFLGAIRLPNSVFKNTGAEVTSDIVFFKKG 1170

Query: 415  TEERRGKVQ---------LINATDLWTSIRNEGKKRRIINDDQRRQILDI---YVSRENG 462
             +E   +           +I++ D  T    +  +        + +I++    +   +  
Sbjct: 1171 VDEATNQSFTKAMPYYDKIIDSLDDNTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQE 1230

Query: 463  KFSRML---DYRTFGYRR 477
            K  R     D   FGY+ 
Sbjct: 1231 KLQRWYEKIDTANFGYKE 1248


>gi|310722681|ref|YP_003969504.1| hypothetical protein phiAS5_ORF0215 [Aeromonas phage phiAS5]
 gi|306021524|gb|ADM80058.1| hypothetical protein phiAS5_ORF0215 [Aeromonas phage phiAS5]
          Length = 417

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +F TP +VV+                      T ++P+CG G  L   +  +    
Sbjct: 293 KQTAEFFTPIEVVNKML--------DHTDIDTSKTSTFFEPSCGDGNILEGIVKRMQATR 344

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                    +   + +            L+R L    R  L++ I   +TL  D  +  R
Sbjct: 345 LDSDTIVSRIYACEYMRDN--REAAIERLVRLLGEKQRDKLNERIAYCNTLDPDDTSDGR 402

Query: 292 F 292
           F
Sbjct: 403 F 403


>gi|126741164|ref|ZP_01756844.1| hypothetical protein RSK20926_02032 [Roseobacter sp. SK209-2-6]
 gi|126717687|gb|EBA14409.1| hypothetical protein RSK20926_02032 [Roseobacter sp. SK209-2-6]
          Length = 1603

 Score = 43.4 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 87/325 (26%), Gaps = 51/325 (15%)

Query: 172  EGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAMNHVADC 230
            +      TP +VV      + D   + F ++ G     + DP  GTG F+T  +      
Sbjct: 867  QRLGIVYTPVEVVDFILHSVNDVLKSQFGQTLGSKGVHILDPFTGTGTFITRLLQSGLIS 926

Query: 231  GSHHKIPPILVPHGQELEPETHAVCVAG-------MLIRRLESDPRRDLSKNIQQGSTL- 282
                +       H  E+    + +           +    L  D   +  K I    T  
Sbjct: 927  PEELEHKYKHEIHANEIVLLAYYIAAVNIETVYHELAQGALSDDAPYEPFKGILLTDTFQ 986

Query: 283  ------------------SKDLFTGKRFHYCLSNPPF--GKKWEKDKDAVEKEHKNGELG 322
                               +           + NPP+  G+    D  A     +  E  
Sbjct: 987  MYEQERDMIANLLPDNSERRTRQKELDIRVIIGNPPYSAGQNSANDNAANIGYAQLDEKI 1046

Query: 323  RFGPGLPKIS-DGSMLFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
            R        + + + L+  ++             G  A V ++  +  G A  G   +R+
Sbjct: 1047 RDTYAAESTATNKNSLYDSYIRAIRWASDRIGDAGVMAYVSNAGWV-EGNAADG---LRK 1102

Query: 380  WLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSNRKTEERRGKVQL 424
             L E      +  L  +              +F   +     + +          G++  
Sbjct: 1103 CLAEEFSDLYVFHLRGNQRTSGEKSRKEGGKIFGSGSRAPIAISVFVKNPDATEHGRIHF 1162

Query: 425  INATDLWTSIRNEGKKRRIINDDQR 449
             +  D     +     R   + D  
Sbjct: 1163 HDIGDYLDQKQKLSIVRDFRSVDGI 1187


>gi|294646402|ref|ZP_06724047.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292638270|gb|EFF56643.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 1354

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 77/246 (31%), Gaps = 53/246 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  VV      L  P        PG      DP+ GTG      +  V + 
Sbjct: 20  NSVLTAFYTPEPVVTAMQESLQVP-----GIRPG---RFLDPSAGTG-MFISGLKGVPEV 70

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K                 A+                D  ++IQ         +   
Sbjct: 71  HCFEKDKLTGKILSALYPESRVAI----------------DGFQSIQP--------YYNN 106

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELP 349
            F    SN PFG     D+D    E            + + S  S+  +  +   K    
Sbjct: 107 YFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFLKGMDT 153

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTNIATYL 407
            + GG  A + +S  + + +       +R WL+ +  + + + LP +LF    T +++ L
Sbjct: 154 LHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTEVSSDL 209

Query: 408 WILSNR 413
            +L   
Sbjct: 210 IVLQKN 215


>gi|56421321|ref|YP_148639.1| hypothetical protein GK2786 [Geobacillus kaustophilus HTA426]
 gi|56381163|dbj|BAD77071.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 329

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 78/256 (30%), Gaps = 43/256 (16%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  V      L+             +   + DP  GT   LT  +N +    ++  
Sbjct: 93  HQMTPDAVSLFLAYLV------REFTRSHLALKILDPAVGTANLLTAVLNGLRGKQANS- 145

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +++     +      +        +     +    +L       +     
Sbjct: 146 -------YGSDVDDLLVKLAYVNANL--------QKHPVQLFNQDSLRP--LFVEPVDVV 188

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + + P G  +  D D   +     + GR        S    LF+       +     GG 
Sbjct: 189 VCDLPVG--YYPDDDNAARFSLKAKEGR--------SYAHHLFIEQSLRYTKE----GGY 234

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              ++ +  LF+       +E  +   E  +++ ++ LP  +F     A  + IL  +  
Sbjct: 235 LFFLIPN-MLFSSPQAGQLNEFLK---EAAIVQGVLQLPLSMFKNDQAAKSVLILQKKGP 290

Query: 416 E-ERRGKVQLINATDL 430
             ++   V L+     
Sbjct: 291 NVKKPKHVLLVELPRF 306


>gi|108563867|ref|YP_628183.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori HPAG1]
 gi|107837640|gb|ABF85509.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori HPAG1]
          Length = 134

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL--SKDLFT 288
               K        G EL  E  ++    M++R        D S  I +G+T   SK ++ 
Sbjct: 20  NEKIKNAKTTQLLGVELNAEMFSLATTNMILRG-------DGSSLIIKGNTFETSKKIYE 72

Query: 289 GKRFHYCLSNPPFGKKWEKDK 309
             + +  L NPPF  +     
Sbjct: 73  DFKPNILLLNPPFSYEENGMP 93


>gi|257076666|ref|ZP_05571027.1| type I restriction-modification system methylation subunit
           [Ferroplasma acidarmanus fer1]
          Length = 139

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 12/115 (10%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSN--IDLESFVK 74
             A+ +        +   IL    ++RL       +  V +            + E+  +
Sbjct: 20  NAADLVRTSVD---YK-YILILLFIKRLSDGW---KEEVEDAMSKIMEEAGIDESEAGKR 72

Query: 75  VAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIF-EDFDFSSTIARLE 128
                F+N            N R + E    + S     I  E+ +    + R++
Sbjct: 73  AVSNEFHNF--MVPENALCNNIRKDREKLKENMSRGINEIAKENKELDEIVNRID 125


>gi|315655210|ref|ZP_07908111.1| helicase [Mobiluncus curtisii ATCC 51333]
 gi|315490465|gb|EFU80089.1| helicase [Mobiluncus curtisii ATCC 51333]
          Length = 1724

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 64/248 (25%), Gaps = 37/248 (14%)

Query: 108  SDNAKAIFEDF----DFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVPDRVMSNIYEHL 162
            S   + I +      +F +    L K    Y  + +  + I+         +M  +Y+  
Sbjct: 869  SRAMQGILDRLASSQEFENEREPLAK---FYDTMAEKITAIDNLAGKQE--IMRTLYDKF 923

Query: 163  IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLT 221
              +    + +      TP  VV              F +  G     + +P  GTG F++
Sbjct: 924  FTKAFPAMQDRLGIVFTPVPVVDYILHSAEAAMQKHFGKGLGDKGVAIIEPFLGTGTFVS 983

Query: 222  DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKN 275
              +        H +   +      E+   ++ +    +      +    E D        
Sbjct: 984  RLLQSGIIPPEHLEHKYLHEIFANEIVLLSYYIASINIEQVYHQIRLEQEHDDEYVEFPG 1043

Query: 276  IQQGSTL--------------------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            I    T                       +          + NPP+    +   D  +  
Sbjct: 1044 ISLADTFQLTEQRNHAEGGGVFVDNNERTNRQIETPIRVVVMNPPYSAGQKSANDNNQNL 1103

Query: 316  HKNGELGR 323
                   R
Sbjct: 1104 KYPQLDAR 1111


>gi|229496983|ref|ZP_04390688.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229316085|gb|EEN82013.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 2065

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 58/401 (14%), Positives = 122/401 (30%), Gaps = 68/401 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   IR   DP+ G G F          ++ +       +I   + P+G
Sbjct: 111 IVAAISDALTATNVQIRRCLDPSAGMGAFTETFSKKAGTVDAMEKDLLTARISQAIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q+            +++R+   +   +L                  ++    SN PFG  
Sbjct: 171 QD-----------NIIVRQAPFEAIGELED--------------KDKYDLVTSNIPFG-- 203

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D    ++E+  G+          I +       +   K       GG  A + S   
Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR--KTEERR 419
           L + +       IRR+L++N  + + + LP+ +F     T + + L +L  +  KT    
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQSGKTISEG 309

Query: 420 GKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYR-- 476
            + Q + + +       +   K   + D + + I    ++ E            + Y   
Sbjct: 310 MEQQFVASVSAPIAEGSSVVFKHNSLFDGEWKDITHRTIATERTMGRDPYGKPAWEYHFD 369

Query: 477 ------------RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
                       ++ +    R+   L +TG+   E +        L +      LK    
Sbjct: 370 GGIDDMAENIRTQLSLEFEQRLDRKLYETGIPMTEEERQAEAEKQLQKLGITTKLKTKTD 429

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
           +              +  +  K L  K   +      +   
Sbjct: 430 RQETEDKDIDNAYNLMPDSIRKQL-PKLYSTEKELIGDKVA 469


>gi|11497405|ref|NP_051524.1| adenine specific DNA methyltransferase [Borrelia burgdorferi B31]
 gi|6382426|gb|AAF07736.1|AE001584_33 adenine specific DNA methyltransferase [Borrelia burgdorferi B31]
          Length = 1098

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT---- 149
            N   N ++       N   I         I +  +   L  I ++   I  + DT    
Sbjct: 270 ENIEINFKNIENFIPTNFSLIQNIIKLIKDIHKDSEFNYLRWILESIISIVNNIDTKLIF 329

Query: 150 ----VPDRVMS------NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                 +  ++        YE  + ++   + +    + TP  +V    + L +     F
Sbjct: 330 NEFSFTNSSLNLKDPYLYFYEDFLAKYDVSLRKAKGVYYTPSPIVSFIVSSLNEMLKKEF 389

Query: 200 KESPG----MIRTLYDPTCGTGGFLTDAMNHV 227
           K + G       T+ D   GTG FL + +  +
Sbjct: 390 KLNHGLANKEKVTVLDFATGTGTFLLEVIRTI 421


>gi|319744479|gb|EFV96836.1| SNF2 family protein [Streptococcus agalactiae ATCC 13813]
          Length = 1998

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 50/390 (12%), Positives = 101/390 (25%), Gaps = 76/390 (19%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           ++  A     ++ E         F+      L+      TR+ +E+ +       + + +
Sbjct: 564 KQEEALSEDELEPEVTETPPATDFHFPE--DLTDFYPKTTRDKVETNV----AAVR-LVK 616

Query: 117 DFDFSSTIARLEKAGLLYKIC-------KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             +     A   +  LL K         + F           + + + + E   + +   
Sbjct: 617 SLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREELKTLVTE---KEYSDM 673

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                  + T   ++               +        + DP+ GTG F      H+ +
Sbjct: 674 KQSSLTAYYTDPLLIREMWN--------KLERDGFTGGKILDPSMGTGNFFAAMPKHLRE 725

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +G EL+  T  +                  + +I+         F  
Sbjct: 726 NSE---------LYGVELDTITGVIAK------------HLHPNSHIEV-KGFETIAFND 763

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   LSN PF              +      R+        D   +   +   K    
Sbjct: 764 NSFDLVLSNVPFA-------------NIRIADNRY--------DKPYMIHDYFVKKSLDL 802

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406
            + GG+ AI+        G        I + + E       V LP   F     TN+ T 
Sbjct: 803 VHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDTAFKIIAGTNVTTD 857

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +        +         + +  +     
Sbjct: 858 MLFFQKHMDKGYVADDLAFSGSIRYDKDDR 887


>gi|49420971|gb|AAT65827.1| M.EsaWC3I [uncultured bacterium]
          Length = 422

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 73/263 (27%), Gaps = 49/263 (18%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           +      Y  L     +   E      TP ++V     L                  + +
Sbjct: 12  NFEEDTCYMIL----QNASEESLGAVYTPPELVAFMVHL---------AHPTQPRCRVLE 58

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-LIRRLESDPRR 270
           P C    FL                       G E++P   A     +  +  +E+D   
Sbjct: 59  PACADAPFLAAFAERYGSH---------HEFVGVEIDPARLARARERLPTMTFVEADFLL 109

Query: 271 DLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330
            +                 + F   + NPP+G   +     +    +   L R      +
Sbjct: 110 WV---------------PNETFDVIIGNPPYGIIGDASHYPIHVLRERKALYRQRSLTWR 154

Query: 331 ISDGSM-LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
                   F+ H A  L       G+   V+ +S L           +R +L     + +
Sbjct: 155 GKYNIYGAFIEHAARLLAPE----GKLVFVVPASWLVLDD----FVRLREYLATQGRL-S 205

Query: 390 IVALPTDLFFRTNIATYLWILSN 412
           +  L   +F + N++  + +L  
Sbjct: 206 VYYL-GKVFPKRNVSVVVLVLEK 227


>gi|225621978|ref|YP_002724670.1| adenine specific DNA methyltransferase [Borrelia burgdorferi 94a]
 gi|225546239|gb|ACN92251.1| adenine specific DNA methyltransferase [Borrelia burgdorferi 94a]
          Length = 1086

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT---- 149
            N   N ++       N   I         I +  +   L  I ++   I  + DT    
Sbjct: 258 ENIEINFKNIENFIPTNFSLIQNIIKLIKDIHKDSEFNYLRWILESIISIVNNIDTKLIF 317

Query: 150 ----VPDRVMS------NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                 +  ++        YE  + ++   + +    + TP  +V    + L +     F
Sbjct: 318 NEFSFTNSSLNLKDPYLYFYEDFLAKYDVSLRKAKGVYYTPSPIVSFIVSSLNEMLKKEF 377

Query: 200 KESPG----MIRTLYDPTCGTGGFLTDAMNHV 227
           K + G       T+ D   GTG FL + +  +
Sbjct: 378 KLNHGLANKEKVTVLDFATGTGTFLLEVIRTI 409


>gi|317177484|dbj|BAJ55273.1| Type IIG restriction-modification enzyme [Helicobacter pylori F16]
          Length = 1016

 Score = 43.4 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 71/246 (28%), Gaps = 16/246 (6%)

Query: 43  RLECALEPTRSAVREKYLAFGG---SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN 99
           RL+   E       +   +  G    NI  +  + +       TS      +      +N
Sbjct: 754 RLKDIFEKNPEIFHDFLDSLRGNIHQNIKEDEALDM------ITSHIITKPIFDAIFGDN 807

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           +++ I+   D                 L+    LY+  K    +          ++ N+Y
Sbjct: 808 IKNPISKALDKMVEKLSTLGLQGETKDLKN---LYESVKT-EAMHAKSQKSQQELIKNLY 863

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGG 218
               +    + SE      TP +VV                 +      T++DP  GTG 
Sbjct: 864 NTFFKVAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDKNITIFDPFTGTGS 923

Query: 219 FL--TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           F+    +  +        K   +      ++    + + +  +       D      KNI
Sbjct: 924 FIARLLSKENGLISDEALKEKFLNHCFAFDIVLLAYYIALINITQAAQSRDGSLKTFKNI 983

Query: 277 QQGSTL 282
               +L
Sbjct: 984 ALTDSL 989


>gi|261418201|ref|YP_003251883.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|319767839|ref|YP_004133340.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
 gi|261374658|gb|ACX77401.1| N-6 DNA methylase [Geobacillus sp. Y412MC61]
 gi|317112705|gb|ADU95197.1| N-6 DNA methylase [Geobacillus sp. Y412MC52]
          Length = 329

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 43/256 (16%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  V      L+             +   + DP  GT   LT  +N +    +   
Sbjct: 93  HQMTPDAVSLFLAYLV------REFTRSHLALKILDPAVGTANLLTAVLNGLRGKQAAS- 145

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +++     +      +        +     +    +L       +     
Sbjct: 146 -------YGSDVDDLLVKLAYVNANL--------QKHPVQLFNQDSLRP--LFVEPVDVV 188

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + + P G  +  D D   +     + GR        S    LF+       +     GG 
Sbjct: 189 VCDLPVG--YYPDDDNAARFALKAKEGR--------SYAHHLFIEQSLRYTKE----GGY 234

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              ++ +  LF+       +E  +   E  +++ ++ LP  +F     A  + IL  +  
Sbjct: 235 LFFLIPN-TLFSSPQAGQLNEFLK---EAAIVQGVLQLPLSMFKNDQAAKSVLILQKKGP 290

Query: 416 E-ERRGKVQLINATDL 430
             ++   V L+     
Sbjct: 291 NVKKPKHVLLVELPRF 306


>gi|302520232|ref|ZP_07272574.1| type IIS restriction enzyme [Streptomyces sp. SPB78]
 gi|302429127|gb|EFL00943.1| type IIS restriction enzyme [Streptomyces sp. SPB78]
          Length = 1166

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 22/128 (17%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
             L+ R  S +++  E ++ P           +D +    K S      + DP CG+G  
Sbjct: 259 LWLLNRPASRLADQMEYYIAP-----------VDEETDYLKVSSPEKLKIIDPACGSGHM 307

Query: 220 LTDAMNHVADCGSHHKIPP--------ILVPHGQELEPETHAVCVAGMLIRR---LESDP 268
           LT A + +          P            +G E++P   A+    + ++      +  
Sbjct: 308 LTYAFDLLYAIYEEEGYAPSDIPALILSNNLYGTEIDPRAGALAAFALTMKGRARQRTFF 367

Query: 269 RRDLSKNI 276
            RD+  NI
Sbjct: 368 NRDVEPNI 375


>gi|196048388|ref|ZP_03115564.1| SNF2 family protein [Bacillus cereus 03BB108]
 gi|196020821|gb|EDX59552.1| SNF2 family protein [Bacillus cereus 03BB108]
          Length = 2366

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 93/362 (25%), Gaps = 60/362 (16%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               + DP  GTG F +     +               +G E++P T  +          
Sbjct: 623 KGGKVLDPAMGTGNFFSAMPEELK---------KNASLYGVEIDPLTGNIAK-------- 665

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                   +  IQ  +   K  F    F   + N PF               +  +    
Sbjct: 666 ----HLHQTSEIQV-TGFEKTDFQKGSFDVIVGNIPF------------DNFRLKDN--- 705

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                           +   K        G  A + S+  +        +   R  + + 
Sbjct: 706 ------SLKKDYQIHDYFIKKSLDLVREDGIVAFISSAGTM-----DKRDYSFREEISKE 754

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR 441
             +   V LP + F     T + T +      K++E   K                    
Sbjct: 755 AELLGAVRLPNNAFKKIAGTEVTTDILFFQK-KSKEVEHKTSPDWVFSGVDEKHPTISYN 813

Query: 442 RIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG--LARLE 499
               +++ + + DI V    G+   +           +VL PL    +    G  +    
Sbjct: 814 NYFIENKEQVLGDIAVKNFRGQTLTVNPKED------EVLYPLLEEGLKRIEGQYIESNY 867

Query: 500 ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVA 559
            +              ++I+ P   + + +   +  +    +    K    + +   I  
Sbjct: 868 EEKALENDIQDENEPKVEIISPQRTRPFTFIEQDKEIFYVDEEGLIKQELSQKAAERIKG 927

Query: 560 FI 561
            I
Sbjct: 928 MI 929


>gi|291086755|ref|ZP_06571656.1| putative MutS domain I [Clostridium sp. M62/1]
 gi|291076845|gb|EFE14209.1| putative MutS domain I [Clostridium sp. M62/1]
          Length = 2973

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 88/325 (27%), Gaps = 75/325 (23%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-YEH 161
              F  N KAI   +  +  +  A  E+  LL +        +      P         + 
Sbjct: 1352 EKFWRNIKAIATLKQIEQENRHATPEEQHLLSQYVGWGGLADAFDPEKPAWAAEYAQLKE 1411

Query: 162  LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            L+    + +          T   V+      +                 + +P+CG G F
Sbjct: 1412 LLTPEEYAAARGSTLNAHYTSPTVIRAIYEAVG--------RMGFETGNILEPSCGVGNF 1463

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSK 274
                   +               +G EL+  +  +       A + +   E+  RRD   
Sbjct: 1464 FGMLPEEMR----------NSRLYGVELDTVSGRIAQQLYPKANITVAGFETTDRRDF-- 1511

Query: 275  NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                             +   + N PFG+    DK      +K G               
Sbjct: 1512 -----------------YDLAVGNVPFGQYQVNDKAY----NKLGFNI------------ 1538

Query: 335  SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
                  +   K       GG  A V            + +S +RR+L +   +   + LP
Sbjct: 1539 ----HNYFFAKALDQVRPGGVVAFVT-----SRYTMDAKDSAVRRYLAQRAELLGAIRLP 1589

Query: 395  TDLF---FRTNIATYLWILSNRKTE 416
             D F     T + + +  L  R   
Sbjct: 1590 NDAFKKNAGTEVVSDIIFLQKRDRP 1614


>gi|258648321|ref|ZP_05735790.1| putative type IIS restriction endonuclease [Prevotella tannerae
           ATCC 51259]
 gi|260851483|gb|EEX71352.1| putative type IIS restriction endonuclease [Prevotella tannerae
           ATCC 51259]
          Length = 1120

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 61/220 (27%), Gaps = 47/220 (21%)

Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189
           NF+  E  P+         ++  ++E+L+  +  E  E     +  F TPR++V+     
Sbjct: 389 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 448

Query: 190 --LLLDPDDA--------------------LFKESPGMIRTLYDPTCGTG----GFLTDA 223
             +    D+                                + DP CG+G    G L   
Sbjct: 449 SLIAYLGDNDFTRSLFRNDFSFEKSKIEEYKKLAEKIKTVKILDPACGSGAFPMGLLNRM 508

Query: 224 MNHVADCGSHHKIPP------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
           +  +        I            +G +++     +      I  +    +     N  
Sbjct: 509 VEILERISPDEYIYNLKLSVIENCLYGSDIQSIAAQITKLRFFISLICDCEKDASKPN-- 566

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
                           +  +N    KK +  +  + +  +
Sbjct: 567 ----FGIPTLPNLETKFVSANSLVAKKKKPAQGNLFENPE 602


>gi|254412322|ref|ZP_05026096.1| hypothetical protein MC7420_6277 [Microcoleus chthonoplastes PCC
           7420]
 gi|196180632|gb|EDX75622.1| hypothetical protein MC7420_6277 [Microcoleus chthonoplastes PCC
           7420]
          Length = 995

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 85/324 (26%), Gaps = 92/324 (28%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
            + +    +             +F  F+F      + ++  L                V 
Sbjct: 300 DADDQNPEIIVLDEGIEAIILDLFASFNF-----TVTESTPL-----------DVEVAVD 343

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA--------------------TALL 191
             ++  ++E L+             + TP+ +V                           
Sbjct: 344 PEMLGKVFEELV-----TGRHETGSYYTPKPIVSFMCREALKGYLRCQLLAESVEAIEAF 398

Query: 192 LDPDDALFKESPGMI------RTLYDPTCGTGGFLTDAMNHVADCGS------HHKIPPI 239
           +D  + +   +P  +        + DP CG+G +L   ++ + +                
Sbjct: 399 VDQHNPMGLINPEAVLGALRRVKVCDPACGSGAYLLGMLHELLELRQCLFATRKIDAKTD 458

Query: 240 LV---------PHGQELEPETHAVCVAGMLIR------RLESDPRRDLSKNIQQGSTLSK 284
            V          +G + +     +    + +         +  P  +L   I+ G +L  
Sbjct: 459 YVRKLEIIETNIYGVDSDVFAVNIARLRLWLSLAVEYEGDDPPPLPNLKFKIEVGDSLIA 518

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                        NP  G    +D+         G   +   G  K S      L     
Sbjct: 519 P------------NPQPGSGMFRDELISRYRETKGAYLKAHLGGEKQS------LEEEIQ 560

Query: 345 KLELPPNGGGRAAIVLSSSPLFNG 368
           +L+      G  A++   S   +G
Sbjct: 561 RLK------GEIALLTHGSIQVSG 578


>gi|259508595|ref|ZP_05751495.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259163821|gb|EEW48375.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 427

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSN----IYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           L  I +  SG+++                 YE  + ++  E  + A  + TP  VV    
Sbjct: 191 LGAIIRLISGMDVPAIQSAKDSRGEPWLWFYEDFLAKYDPEARKQAGVYYTPTSVVQCQV 250

Query: 189 ALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
            ++ D     F ++ G         DP  G+G +    ++   +     + P       +
Sbjct: 251 RMVDDVLRNRFGQTLGFGSKSVVTLDPATGSGTYPLAVIDQAVETAHIERGPAGTQQVAR 310

Query: 246 ELEPETHA 253
            L     A
Sbjct: 311 NLTKNILA 318


>gi|23577984|ref|NP_702932.1| hypothetical protein CE2P014 [Corynebacterium efficiens YS-314]
 gi|23494810|dbj|BAC19774.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 554

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 133 LYKICKNFSGIELHPDTVPDRVMSN----IYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
           L  I +  SG+++                 YE  + ++  E  + A  + TP  VV    
Sbjct: 296 LGAIIRLISGMDVPAIQSAKDSRGEPWLWFYEDFLAKYDPEARKQAGVYYTPTSVVQCQV 355

Query: 189 ALLLDPDDALFKESPG---MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
            ++ D     F ++ G         DP  G+G +    ++   +     + P       +
Sbjct: 356 RMVDDVLRNRFGQTLGFGSKSVVTLDPATGSGTYPLAVIDQAVETAHIERGPAGTQQVAR 415

Query: 246 ELEPETHA 253
            L     A
Sbjct: 416 NLTKNILA 423


>gi|324514530|gb|ADY45896.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Ascaris suum]
          Length = 445

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 81/261 (31%), Gaps = 24/261 (9%)

Query: 69  LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLE 128
            +  +K A +  YN+   S +    +  + +   Y     D    I            LE
Sbjct: 82  EDIRIKSAQFEKYNSPLQSFAIRIRSFGKKHDADYCNKIIDKLGDILP---LDKCPIDLE 138

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH----LIRRFGSEVSEGAEDFMTPRDVV 184
            A  ++ + + +   +    ++ +     +  +    L   +  +      +     ++ 
Sbjct: 139 NASNVFTVIEEYENCDGRDSSLNNIYFGRLIGYGQSRLKNLYNLKERCYIGNTTMDPELS 198

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
            +   L+             M   + DP CGTGG L  A +  A          I    G
Sbjct: 199 FIQANLIKAN----------MGSIVLDPFCGTGGLLISAAHFGAAVIGTEINYQIARAVG 248

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS----TLSK--DLFTGKRFHYCLSN 298
           +        +     +    +     D   ++        T+ +  +  +   F   +++
Sbjct: 249 RSSRVGKKFLTDNESVAANFKQYEIDDRFMSLIIADASRHTMWRCGNNKSDGIFDAIVAD 308

Query: 299 PPFGKKWEKDKDAVEKEHKNG 319
           PP+G + +  +    KE K G
Sbjct: 309 PPYGVREKG-RKVGNKERKTG 328


>gi|195450985|ref|XP_002072718.1| GK13537 [Drosophila willistoni]
 gi|194168803|gb|EDW83704.1| GK13537 [Drosophila willistoni]
          Length = 488

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 54/203 (26%), Gaps = 13/203 (6%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     L                ++DP  GTG  L
Sbjct: 181 HLIKDLSLKHRKFIGNTSMDAQLSLLMANQALV----------APGDLVFDPFVGTGSLL 230

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               +L    +              +   L+     D   ++    
Sbjct: 231 VSAAKFGGYVMGADIDYMMLHARCRPSRITQKVREKDESIRSNLKQYGCADRYMDVVVAD 290

Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             S         F   +++PP+G +   +K   +   K G         P  S  ++  L
Sbjct: 291 -FSNPLWHPRVSFDSIITDPPYGIREATEKVETKVTVKEGTRNSDMAHYPSTSHYALQQL 349

Query: 340 -MHLANKLELPPNGGGRAAIVLS 361
              L +        GGR    L 
Sbjct: 350 YADLLDFASKHLRIGGRLVCWLP 372


>gi|328952426|ref|YP_004369760.1| endonuclease-methyltransferase fusion protein [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452750|gb|AEB08579.1| endonuclease-methyltransferase fusion protein [Desulfobacca
           acetoxidans DSM 11109]
          Length = 1078

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            ++  +Y++L+ +   EV     ++ TP  +  L    +    D L        + L DP
Sbjct: 369 DLLKKLYQYLVPQ---EVRHKLGEYYTPDWLAELVLNEVGYEGDTL--------KRLLDP 417

Query: 213 TCGTGGFLTDAMNHVADCGSHHK-------IPPILVPHGQELEPETHAVCVAG 258
            CG+G FL  A+         H+               G +L P         
Sbjct: 418 ACGSGTFLVLAIQRARQYAHKHRLPPLETAKRIAAHIWGFDLNPLAVIATRTN 470


>gi|258649030|ref|ZP_05736499.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260850656|gb|EEX70525.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 2114

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 111/354 (31%), Gaps = 50/354 (14%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++             IR   DP+ G G F   A       G    +              
Sbjct: 111 IVTAIADALTSVNVPIRRCLDPSAGMGAF---AETFARQAGVVDAMEK------------ 155

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK---DLFTGKRFHYCLSNPPFGKKWEK 307
                   +L  R+          NI   +   +   +L    ++    SN PFG     
Sbjct: 156 -------DLLTARISQALHPYGEGNIFVQNEPFEAIGELEDKDKYDLVTSNIPFG----- 203

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
           D    ++E+  G+          I +    F +   N ++     GG  A + S   L +
Sbjct: 204 DFMVYDREYSKGKDTLKRESTRAIHNY---FFVKGLNCIKE----GGLLAFITSQGVLDS 256

Query: 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV-- 422
            R       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    +  
Sbjct: 257 PRNE----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISEGIEQ 312

Query: 423 QLINATDL-WTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYRRIK 479
           Q +    +      +   K   +     + I    I   R  G          + +    
Sbjct: 313 QFVETVSVAKEEGSSVVFKHNSLFVGDWKDISHRTIATERIMGTDPYGRPAWEYRFTGGI 372

Query: 480 VLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
                 +   L      R++  + +    P+ +  W   +  M+Q++     AE
Sbjct: 373 EEMAESLRTQLSLEMGQRIDRKL-YETGIPMTKEEWQVRVNEMLQKLGVTVQAE 425


>gi|47177046|ref|YP_015657.1| methylase protein [Oligotropha carboxidovorans OM5]
 gi|47115437|emb|CAG28490.1| putative methylase protein [Oligotropha carboxidovorans OM5]
          Length = 1550

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 69/260 (26%), Gaps = 58/260 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  +V    +          +        + +P  GTG F     
Sbjct: 9   DYASLARCTQYAHFTPEFIVQAIWS--------GLQRLGWRGGRILEPGIGTGLFPALMP 60

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           + + D         +    G EL+P T  +                     I  G    +
Sbjct: 61  DGLRD---------VSRVTGIELDPVTARIAR------------LLQPRARIIAGD-FVR 98

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + NPPF  +  +   A                          F+    +
Sbjct: 99  TELPA-SFDLAIGNPPFSDRTVRSDRAYRSLGLRLHDY---------------FIARAID 142

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L+     G  AA V S+  +        +S +R  + ++  + A + LP   F     T
Sbjct: 143 LLKP----GALAAFVTSAGTM-----DKADSTMRECIAKSADLIAAIRLPEGSFRASAGT 193

Query: 402 NIATYLWILSNRKTEERRGK 421
            +   +      K  +  G 
Sbjct: 194 EVVVDVLFFRKHKIGDAEGD 213


>gi|313115794|ref|ZP_07801238.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621879|gb|EFQ05390.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1405

 Score = 43.4 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 78/275 (28%), Gaps = 72/275 (26%)

Query: 167  GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             +  S       T   V+               +        + +P+ G G F     + 
Sbjct: 923  AAARSSTLNAHYTSPTVIRSIY--------DAVERMGFRSGNILEPSMGVGNFFGMLPDS 974

Query: 227  VADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQGST 281
            +AD             +G EL+  T  +       A + +   E+  RRD          
Sbjct: 975  MAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF--------- 1015

Query: 282  LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
                      +   + N PFG+    DK      +K G            S  +  F   
Sbjct: 1016 ----------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFFAKA 1050

Query: 342  LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--- 398
            +          GG  A V            S +S  R+ + E   +   + LP + F   
Sbjct: 1051 I-----DQARPGGIVAFVT-----SRYTMDSKDSAARKHMAERAALLGAIRLPNNAFRAN 1100

Query: 399  FRTNIATYLWILSNRKT--EERRGKVQLINATDLW 431
              T++ + +  L  R    +     VQL    D +
Sbjct: 1101 AGTDVVSDIIFLQKRDRPIDHEPDWVQLGKTEDGF 1135


>gi|329888243|ref|ZP_08266841.1| type II restriction enzyme, methylase subunit [Brevundimonas
           diminuta ATCC 11568]
 gi|328846799|gb|EGF96361.1| type II restriction enzyme, methylase subunit [Brevundimonas
           diminuta ATCC 11568]
          Length = 893

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 56/211 (26%), Gaps = 51/211 (24%)

Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPD----DALFKESPGMIR---- 207
           +I+  +I+    E +        T    +      L   D         + P  +R    
Sbjct: 281 DIFGSMIQSIADEKARSELGMHYTSVPNIMKVLGPLFLDDLDAEIDKAWDKPAALRAQLA 340

Query: 208 -----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-----------------VPHGQ 245
                 ++DP CG+G FL  A   + +                              +G 
Sbjct: 341 RLSKIRVFDPACGSGNFLVVAYRQMRERELRILKRLGEPDPKKATMQMFSSVSLGQFYGI 400

Query: 246 ELEPETHAVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDLF----- 287
           E+           + I   +++ R                  NI   ++L  D       
Sbjct: 401 EINDFAAETAKLALFIAEYQANARFADVFGRMPALLPLRDGGNIVCDNSLRTDWESVCPP 460

Query: 288 -TGKRFHYCLSNPPF-GKKWEKDKDAVEKEH 316
                  Y   NPPF G     D+ A + + 
Sbjct: 461 PENGEEVYLAGNPPFVGFNSRSDEQASDMDF 491


>gi|310831462|ref|YP_003970105.1| putative methyltransferase [Cafeteria roenbergensis virus BV-PW1]
 gi|309386646|gb|ADO67506.1| putative methyltransferase [Cafeteria roenbergensis virus BV-PW1]
          Length = 1334

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 79/253 (31%), Gaps = 53/253 (20%)

Query: 116  EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRR-------FGS 168
            +   F   I  +E   +L  I               +  + N++  L ++       F  
Sbjct: 832  DKSSFEEQINLIESNNILKNILLEQIHTWWGNKF--NHDILNVFLVLYQKRLKDNKEFNM 889

Query: 169  EVSEGAEDFM----TPRDVVHLATALLLDPDDALFKESP--------------------G 204
              S   E F       +++  L    L+  +      +                      
Sbjct: 890  VCSRTKEMFYQNISNSKELSKLIDKYLIPQELEKKTNAEVSTPYQLRQEMLDKIPLDFWS 949

Query: 205  MIRTLYDPTCGTGGFLTDAMNH----VADCGSHHKIPPILV----PHGQELEPETHAVCV 256
              R +++P  G GGFL D ++     + D     K    ++     +  ++ P       
Sbjct: 950  KKRKVFEPCSGKGGFLMDIVDKFMIGLKDKYPDDKKRYKIIVEKCLYFSDINPT------ 1003

Query: 257  AGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKK--WEKDKDA 311
              + + +L  DP  D   N  +G+TL  D    +  + F   + NPP+      +K    
Sbjct: 1004 -NIFLNKLLLDPYGDYKLNYNEGNTLELDIKEKWGLEGFDAVIGNPPYQAPSLNKKSSKI 1062

Query: 312  VEKEHKNGELGRF 324
            +  +  N  +  F
Sbjct: 1063 LWNKFVNKSINYF 1075


>gi|167763598|ref|ZP_02435725.1| hypothetical protein BACSTE_01973 [Bacteroides stercoris ATCC
           43183]
 gi|167698892|gb|EDS15471.1| hypothetical protein BACSTE_01973 [Bacteroides stercoris ATCC
           43183]
          Length = 1355

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 76/246 (30%), Gaps = 53/246 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  VV      L  P        PG      DP+ GTG F++   +     
Sbjct: 20  NSSLTAFYTPEPVVTAMQESLQLP-----GIRPG---RFLDPSAGTGMFISGLKDVSEVH 71

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                     +     L PE+                   D  ++IQ         +   
Sbjct: 72  CFEKDKLTGKIL--SSLYPES---------------RVTIDGFQSIQP--------YYNN 106

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLANKLELP 349
            F    SN PFG     D+D    E            + + S  S+  +  +   K    
Sbjct: 107 YFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFLKGMDT 153

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY--L 407
            + GG  A + +S  + + +       +R WL+ +  + + + LP +LF          L
Sbjct: 154 LHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFTDAGTEVGSDL 209

Query: 408 WILSNR 413
            +L   
Sbjct: 210 IVLQKN 215


>gi|88706715|ref|ZP_01104417.1| N6 adenine-specific DNA methyltransferase, N12 class
           [Congregibacter litoralis KT71]
 gi|88699036|gb|EAQ96153.1| N6 adenine-specific DNA methyltransferase, N12 class
           [Congregibacter litoralis KT71]
          Length = 402

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 48/253 (18%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +L  R      +    F TP  + +L   L+ +  +           +L D   G GG L
Sbjct: 3   NLCYRQAKNEEDRLGQFSTPPAIANLLAGLVANGINEPV--------SLLDLGAG-GGPL 53

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A++   D GS   +        Q          +A + I+             + +  
Sbjct: 54  AKALDRCIDLGSSALLEVDCAYTEQ----------LACLPIQG---------EVKVVRSD 94

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG---SML 337
            L  +    +  +  LSNPP+G  ++  +   +     G         P   +       
Sbjct: 95  FLGDEWLPTQSPNVVLSNPPYG-SFKASQRLQKLSRDLGFQ------TPVKGEWMRTDAA 147

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN-DLIEAIVALPTD 396
           FL+   + +      G R   ++S + +         ++ R  L+     +E ++ L   
Sbjct: 148 FLVRAWSFM----ELGTRIGFIVSEAMI----THPSFAKFRSVLVNKLSSLE-VIKLEPT 198

Query: 397 LFFRTNIATYLWI 409
           +F R  ++ Y+ +
Sbjct: 199 IFARAEVSAYMIV 211


>gi|295706878|ref|YP_003599953.1| hypothetical protein BMD_4780 [Bacillus megaterium DSM 319]
 gi|294804537|gb|ADF41603.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
          Length = 330

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 98/312 (31%), Gaps = 51/312 (16%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           Y+ + ++  + +F+       +  + K   L K   + +      D      +   Y+  
Sbjct: 29  YLEAVAETGENLFQGTILQEELDEVTK-KRLKKEYDSIT-----LDHFEKETIRKAYQLA 82

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I +   E  +     MTP  V    + L+          +     TL DP  G G  LT 
Sbjct: 83  ILKGMKEAVQPNHQ-MTPDAVGLFVSYLV------GKFMAGKDKYTLLDPAVGAGNLLTT 135

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +    +  +       +G +++     +                    N     +L
Sbjct: 136 ---ILNTHAASIE-----HVYGVDVDDLLLQLTYVN-----ANLQKHGVQLFN---QDSL 179

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            + LF        + + P G            E       R   G            + +
Sbjct: 180 -QPLFID-PVDLVVCDLPVGY-------YPNDEGVKEYKVRAEEGHT------YAHHLFI 224

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL-ENDLIEAIVALPTDLFFRT 401
              L    +GG   A++ ++  LF     S +S + + LL E  +++ I+ LP  +F + 
Sbjct: 225 EQSLRHVKDGGYVVALIPNN--LF----ESEQSHLLQPLLKEEAIVQGIIQLPLSMFKQE 278

Query: 402 NIATYLWILSNR 413
             A  + +L  +
Sbjct: 279 QAAKSIMVLQKQ 290


>gi|238020656|ref|ZP_04601082.1| hypothetical protein GCWU000324_00545 [Kingella oralis ATCC 51147]
 gi|237867636|gb|EEP68642.1| hypothetical protein GCWU000324_00545 [Kingella oralis ATCC 51147]
          Length = 964

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 102/371 (27%), Gaps = 107/371 (28%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRF-GSEVSEG-----------AEDFMTPRDVVHLAT 188
           +      + +P  ++ +IYE  +      +  +               F TP+ +V    
Sbjct: 328 TNTPYDFNYIPVHILGSIYERFLGNIIAIDNGKAAIEQKPEVRKAGGVFYTPKYIVDYIV 387

Query: 189 ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------- 233
              +    A             D  CG+G FL    + + D   +               
Sbjct: 388 ENTVGKIIAGKNPDYITKLKFADIACGSGSFLIGVYDCLLDYHKNYYNRYPDKAKSAGCH 447

Query: 234 -----------HKIPPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK----- 274
                       K          +G +++ +   V    + ++ LE +     +      
Sbjct: 448 FDEATGTWVLSIKQKQRILLNNIYGVDIDLQATEVTQLSLFLKLLEDETMASANDMQVLF 507

Query: 275 ----------NIQQGST-------------LSKDL------------------FTGKRFH 293
                     NI  G++             L++D                   F    F 
Sbjct: 508 ADKILPNLSGNICCGNSLIGYEIMDIMGDELAQDEDIRRKINPFDFQAAFASVFAAGGFD 567

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             + NPP+ K  +K+  A  K+H   +  ++           +LFL      L+     G
Sbjct: 568 AIVGNPPYVKVSDKELLAYFKQHFQHQNYQYDLY--------LLFLERYHALLKEKGLLG 619

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
                    S  F         +IR+ LL +     I+     +F    + T++ +    
Sbjct: 620 VIVPNTWLQSVTFT--------KIRKHLLGDYRWHKILHGKEHIF-DAVVDTHVLVFEKG 670

Query: 414 KTEERRGKVQL 424
                +GK   
Sbjct: 671 ---SLKGKSLF 678


>gi|218132346|ref|ZP_03461150.1| hypothetical protein BACPEC_00205 [Bacteroides pectinophilus ATCC
            43243]
 gi|217992684|gb|EEC58686.1| hypothetical protein BACPEC_00205 [Bacteroides pectinophilus ATCC
            43243]
          Length = 2178

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/312 (13%), Positives = 81/312 (25%), Gaps = 71/312 (22%)

Query: 117  DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164
            + D   T+ ++E           KI   F G         +       E+     L+   
Sbjct: 909  NIDAIRTLKQIESENRFATPEDQKILSKFVGWGGLSQAFDEENAGWSKEYTELKELLSDE 968

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T  ++     + L+        +       + +P+ G G F     
Sbjct: 969  EYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRGGNVLEPSMGIGNFFGSM- 1019

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                              +G EL+  +  +              +   + NI   +    
Sbjct: 1020 ---------PAPMQRSKLYGVELDSISGRIAK------------QLYQNANI-SITGFEN 1057

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG     D    +   +  +                        
Sbjct: 1058 TTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY--------------------FLA 1097

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A++ +   L           IR++L E   +   + LP   F     T
Sbjct: 1098 KALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAELVGAIRLPNTAFKDNAGT 1152

Query: 402  NIATYLWILSNR 413
             +   +  L  R
Sbjct: 1153 EVTADILFLQKR 1164


>gi|330878731|gb|EGH12880.1| putative DNA methylase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 56/200 (28%), Gaps = 41/200 (20%)

Query: 157 NIYEHLIRRFGSEVSEGA-EDFMT----------PRDVVHLATALLLDPDDALFKESPGM 205
           +I+  +I+    +    A     T          P  +  L   L    D+     +   
Sbjct: 284 DIFGSMIQAVADDEERSALGMHYTSVPNILKVLKPLFLDDLCAQLQAAGDNKSKLLNLRK 343

Query: 206 IR---TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETH 252
                 ++DP CG+G FL  A  H+ D  +                     G EL     
Sbjct: 344 RMARIRVFDPACGSGNFLVIAYKHMRDIEAEINRRRGESNNKSEIPLTNFRGIELRDFPA 403

Query: 253 AVCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDLF----TGKRFHYC 295
            +    ++I   + D      ++             I  G+ L  D              
Sbjct: 404 EIARLALIIAEFQCDVLYRGQQDALAEFLPLNAQNWIVCGNALRLDWLSICPPTGTGVKV 463

Query: 296 LSNPPFGKKWEKDKDAVEKE 315
           L++  FG    + +   E E
Sbjct: 464 LADDLFGTPLNQTEIDFENE 483


>gi|227496637|ref|ZP_03926913.1| methylase [Actinomyces urogenitalis DSM 15434]
 gi|226833832|gb|EEH66215.1| methylase [Actinomyces urogenitalis DSM 15434]
          Length = 944

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 64/236 (27%), Gaps = 62/236 (26%)

Query: 123 TIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD 182
            I +L +      + +  +G++     +   V   ++E  +     E         T   
Sbjct: 286 EIPQLTQEICTLLVHEVSTGVDW--SGISPTVFGGVFESTL---NPETRRAGGMHYTSPQ 340

Query: 183 VVHLATALLLDPD----------DALFKESPGMIR-----------TLYDPTCGTGGFLT 221
            +H     L              D    E     R           T  DP  G+G FLT
Sbjct: 341 NIHRVIDPLFLDALTAELEGILADTTVTERTRKTRLRRYQDKLASLTFLDPAAGSGNFLT 400

Query: 222 DAMNHVADC--------------------GSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           +    +                       G       +   HG E+     +V    + I
Sbjct: 401 ETFICLRRLENKVLSVLQGPQTALEFEGVGESAIKVQLAQFHGIEINDFAASVARTALWI 460

Query: 262 RRLES-------------DPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPF 301
             L++             D     +  I +G+ L     DL    R  Y + NPPF
Sbjct: 461 AELQANAETAEIIQREVEDLPLRDAATIIEGNALDMDWNDLLPASRCSYIMGNPPF 516


>gi|325300205|ref|YP_004260122.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
 gi|324319758|gb|ADY37649.1| type I restriction enzyme, M subunit [Bacteroides salanitronis DSM
           18170]
          Length = 239

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 28/156 (17%)

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F TP  +  L         +          + +  PTCG+G  L     H       
Sbjct: 103 NGQFFTPSHICELMVMCAAGKKET--------GQRMGGPTCGSGRLLLAYHAH------- 147

Query: 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
               P     G+++      + V  ML+     +             +L    FT   + 
Sbjct: 148 ---NPGNYLVGEDISRTCCMMTVCNMLVHGCVGEVICH--------DSLQPKAFTDG-WK 195

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGEL-GRFGPGL 328
              + P  G    +     E  +   E  GRF   +
Sbjct: 196 VNQALPLTGIPSIRRMKEEEYRNPLPENIGRFKEAV 231


>gi|296126364|ref|YP_003633616.1| hypothetical protein Bmur_1327 [Brachyspira murdochii DSM 12563]
 gi|296126744|ref|YP_003633996.1| hypothetical protein Bmur_1712 [Brachyspira murdochii DSM 12563]
 gi|296127307|ref|YP_003634559.1| hypothetical protein Bmur_2287 [Brachyspira murdochii DSM 12563]
 gi|296018180|gb|ADG71417.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
 gi|296018560|gb|ADG71797.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
 gi|296019123|gb|ADG72360.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 239

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 49/135 (36%), Gaps = 19/135 (14%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            V+  +++ L        ++    F TP ++ +    +                    +P
Sbjct: 91  DVLGVLFQEL-----ELKNDFKGQFFTPYELSYCMNKINF----DKSLLESKSFIYCNEP 141

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             G+GG +  +   V + G +         + ++L    + + +  + +  ++ +     
Sbjct: 142 AAGSGGIVIASCQIVEELGYN---------YAEKLIWNINDLDLMCVYMSFIQLNLIGAS 192

Query: 273 SKNIQQGSTLSKDLF 287
           +  IQ  +TLS ++F
Sbjct: 193 AL-IQHCNTLSMEVF 206


>gi|300933682|ref|ZP_07148938.1| GcrY [Corynebacterium resistens DSM 45100]
          Length = 892

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 61/253 (24%), Gaps = 66/253 (26%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD----DALFKESPGMIRT-------------L 209
             E      +  T +  +      L   +          SP                   
Sbjct: 281 SKEARRSDGEHYTSKANIMKTIGPLFLDELRAEADKLVSSPSTSVAALERFRDSLSELVF 340

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHH--------------------KIPPILVPHGQELEP 249
            D  CG+G FL  A   +    +                      +   I   +G EL  
Sbjct: 341 ADMACGSGNFLLLAYRELRRIETDIIVAIRQRRGETGMSLNIEWEQKLSIGQFYGIELNW 400

Query: 250 ETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDLF----TGKRF 292
               +    M +   +++     +              +I  G+ L  D           
Sbjct: 401 WPAKIAETAMFLVDHQANKELANAVGRPPERLPIKITAHIVHGNALQLDWADILSASAAK 460

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPP 350
            Y   NPPF            +  +  +  R   G   IS    +  +     +  +   
Sbjct: 461 TYIFGNPPF-------LGHATRTAEQAQELRDLWGTKDISRLDYVTGWHAKCLDFFKSRE 513

Query: 351 NGGGRAAIVLSSS 363
              GR A V ++S
Sbjct: 514 ---GRFAFVTTNS 523


>gi|300777180|ref|ZP_07087038.1| res subunit family type III restriction enzyme [Chryseobacterium
           gleum ATCC 35910]
 gi|300502690|gb|EFK33830.1| res subunit family type III restriction enzyme [Chryseobacterium
           gleum ATCC 35910]
          Length = 1345

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 110/354 (31%), Gaps = 61/354 (17%)

Query: 246 ELEPETHAVCVAGMLIR-RLESDPRRDLSKNI-QQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           E+   T  +     ++      + R   ++ I +QG+           +   + NPP+G 
Sbjct: 9   EINETTAKIAK---ILHPEASINVRSFETEFIDEQGNKNEIYQH----YDLIIGNPPYG- 60

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +       + +E K             IS     F+    + L+      G  A+VL S 
Sbjct: 61  EHRGFYKGLGEESK-------------ISKYEDYFVKRSLDVLKHD----GILAMVLPSG 103

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR--KTEERRGK 421
            L            R+  L+N  +     LPT  F  T + T +  L     K       
Sbjct: 104 WLN-----------RQNNLKNAELVKAFRLPTGAFAGTKVGTDIIFLRKDSQKIAHNISD 152

Query: 422 VQLINATDLWTSIRNEGKK--RRII-NDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRI 478
               N  ++   IR +  +  R  +       + L      +  K +  +          
Sbjct: 153 HFERNPQNILGEIREKPNRFGRMELYVHGNLDEALSQLQRLQEVKKTERIGN-------- 204

Query: 479 KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
                L    + D     +   +I   K S L ++  +D ++   +             +
Sbjct: 205 -----LFEDLLYDNLEPEKQADNIVSAKKSDLGKTAEIDFVEVQNKIRAVLSTLNDIKFK 259

Query: 539 SI----KSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPDTNLT 588
           S+    ++++ K L+ + S++              +AD V   + +   D+   
Sbjct: 260 SLAILKETDKYKKLQGQLSENPKKFNQEQLSEILEKADRVIQSH-QTKKDSEYR 312


>gi|160902728|ref|YP_001568309.1| hypothetical protein Pmob_1273 [Petrotoga mobilis SJ95]
 gi|160360372|gb|ABX31986.1| hypothetical protein Pmob_1273 [Petrotoga mobilis SJ95]
          Length = 1125

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 91/330 (27%), Gaps = 95/330 (28%)

Query: 171 SEGAEDFMTPRDVVHLATAL----------LLDPDDALFKESPGMIR-----TLYDPTCG 215
           +     F TP+ +V                L    +                 + DP CG
Sbjct: 187 NGVISQFYTPKWIVDYLVENTLGKYYGRNGLTAHKEDSLTAGDDKGVDLEDVKIIDPACG 246

Query: 216 TGGFLTDAMNHVADCGSHHKIPP--------ILVPHGQELEPETHAVCVAGMLIRRLESD 267
            G F+    + + +   +                 +G +++     +    + ++ LE  
Sbjct: 247 CGNFVIGVYDKLREMYQNKGYDDALIPKLIITKNLYGIDIDENAVEITNLLLRLKALEDG 306

Query: 268 PRRDLSKNIQ---QGSTLSKDLFTGKR--------------------------------- 291
               +  NI    + ++L +     ++                                 
Sbjct: 307 AYERIETNIVAVPKENSLKRPEGGSRKGSLTTNEEGQNEYLKKFEKIGSLMRTEDVLSLK 366

Query: 292 -------------------FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                              +   L+NPP+      D D   K + N +   F        
Sbjct: 367 ESGINDEPLKKALDILSLKYDVVLTNPPYLDS--SDYDFELKRYINEDYSEF------KK 418

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
           +    F+      +++     G   ++   + +F G       + RR++L+N  IE +V 
Sbjct: 419 NLYACFIKKSCELVKMD----GFVGMITPQTFMFIGSYE----KTRRFILDNFQIERLVH 470

Query: 393 LP-TDLFFRTNIATYLWILSNRKTEERRGK 421
                +F    + T +++L   K      K
Sbjct: 471 FGLGGVFDNALVDTAMFVLRKSKNSLTAHK 500


>gi|239631870|ref|ZP_04674901.1| adenine-specific DNA methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526335|gb|EEQ65336.1| adenine-specific DNA methylase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 336

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ++     +E+     S N             +   E    L  +          P+
Sbjct: 22  QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT ++      +F +       
Sbjct: 75  -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   GTG  L   MN + +          +  +G + +    AV      +++L+ D 
Sbjct: 125 VADLAVGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327
                        L   LF        +S+ P G     ++    E     G        
Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVGYYPVDERAKQFETAAAKGH------- 222

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S    L +      L+      G   +    S +F     +G +    WL ++   
Sbjct: 223 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 270

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           + ++ LP D F        L +L     + +R K
Sbjct: 271 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|191637971|ref|YP_001987137.1| Putative modification methylase LaaG [Lactobacillus casei BL23]
 gi|190712273|emb|CAQ66279.1| Putative modification methylase LaaG [Lactobacillus casei BL23]
 gi|327382047|gb|AEA53523.1| Snf2 family protein [Lactobacillus casei LC2W]
 gi|327385201|gb|AEA56675.1| Snf2 family protein [Lactobacillus casei BD-II]
          Length = 336

 Score = 43.4 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ++     +E+     S N             +   E    L  +          P+
Sbjct: 22  QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT ++      +F +       
Sbjct: 75  -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   GTG  L   MN + +          +  +G + +    AV      +++L+ D 
Sbjct: 125 VADLAVGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327
                        L   LF        +S+ P G     ++    E     G        
Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVGYYPVDERAKQFETAAAKGH------- 222

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S    L +      L+      G   +    S +F     +G +    WL ++   
Sbjct: 223 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 270

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           + ++ LP D F        L +L     + +R K
Sbjct: 271 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|126434836|ref|YP_001070527.1| hypothetical protein Mjls_2250 [Mycobacterium sp. JLS]
 gi|126234636|gb|ABN98036.1| hypothetical protein Mjls_2250 [Mycobacterium sp. JLS]
          Length = 929

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 53/212 (25%), Gaps = 54/212 (25%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPD-------DALFKESPGMIRTLY---------D 211
           ++      +  T  + +      L   +           K+  G++  L+         D
Sbjct: 313 AQTRRELGEHYTSEENILKTLNPLFLDELRAEFDRARTMKDEKGVLTRLWKRLGDIRYMD 372

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEPET 251
           P CG G F+  A   + D                                 +G E++   
Sbjct: 373 PACGCGNFIIVAFRELRDLELRIMERLQELAGASQLAFDPTLALKVTLDHFYGIEIDEWP 432

Query: 252 HAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTLSKDLF---TGKRFHYC 295
             +    M +   + D +                  NI  G+ L                
Sbjct: 433 ARIAETAMFLVDRQCDLKLKERFGEAPQRLPIQTQANIAVGNALQLPWHQHCPVSESVII 492

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
             NPPF     K++ A E        GR   G
Sbjct: 493 AGNPPF--HGPKERSADETADLRTVWGREYDG 522


>gi|237755453|ref|ZP_04584077.1| type IIS restriction enzyme R and M protein [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692385|gb|EEP61369.1| type IIS restriction enzyme R and M protein [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 1203

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 80/296 (27%), Gaps = 80/296 (27%)

Query: 41  LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNL 100
           L R E     ++   ++ +                    F N   +    L         
Sbjct: 290 LYRYEDKFLISKEEAKKLFEDI----------------PFINGGLFDC--LDKDKV---- 327

Query: 101 ESYIASFSDNAKA---IFEDFDFSSTIAR-------LEKAGLLYKICKNFSGIELHPDTV 150
             YI  FS N K    I ++  F+            L K   +  +           D  
Sbjct: 328 --YIDGFSRNEKKQAKISDELFFNEKGKTVDLSKYGLSKNAEVRGLINILKSYNFTTDEA 385

Query: 151 PDRV---------MSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATAL------- 190
                        +  ++E+L+  +  E +    +    + TPR++V             
Sbjct: 386 TPIDQEIALDPELLGKVFENLLASYNPETNTTARKATGSYYTPREIVDYMVEESLREYLK 445

Query: 191 ------------LLDPDDALFKESPGMIR---------TLYDPTCGTG----GFLTDAMN 225
                       L    D   + S  + +          + DP CG+G    G L   + 
Sbjct: 446 TKVPEAENILDDLFSYSDNELEISDDLRKKLIQAIDQVKIIDPACGSGAFPMGILHKLVF 505

Query: 226 HVADCGSHHKIPPILVPHG-QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
            +      +K+   +     ++   E   +      ++ L ++ +    ++I    
Sbjct: 506 LLQKLDPSNKVWYEIQVDRIKKESKEALEIAKDENTLKELLNEVKEHFDESINYPD 561


>gi|188527680|ref|YP_001910367.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
 gi|188143920|gb|ACD48337.1| hypothetical protein HPSH_04510 [Helicobacter pylori Shi470]
          Length = 2803

 Score = 43.0 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 99/329 (30%), Gaps = 69/329 (20%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 958  EFRRAYSSTRDAYYTP----KLVIDSIYQGLDQLGFNNDNHQKEIFEPSLGTGKFI---- 1009

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P +  +                 L  N    +T  +
Sbjct: 1010 -------AHAPSDKNYRFMGTELDPISANISK--------------FLYPNQVINNTALE 1048

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G       +  E  +++                   FL     
Sbjct: 1049 NHQFYQEYDAFVGNPPYGSHKIYSSNDKELSNESVHNY---------------FLGKAIK 1093

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+SS  +      S   ++R  + +N      + LP  +F  T   
Sbjct: 1094 ELKDD----GIGAFVVSSWFM-----DSKNPKMREHIAQNTTFLGAIRLPNSVFKATGAE 1144

Query: 405  TYLWILSNRKTEERRGKVQLINATDLW----------TSIRNEGKKRRIINDDQRRQILD 454
                I+  +K  +         A   +          T    +  +        + +I++
Sbjct: 1145 VSSDIVFFKKCVDEATNQSFTKAMPYYDKIIDSLDNDTLFALQNNRFDSFTPSDQLKIVN 1204

Query: 455  I---YVSRENGKFSRML---DYRTFGYRR 477
                +   +  K  R     D   FGYR 
Sbjct: 1205 AIASHFGFKQEKLQRWYEKIDTANFGYRE 1233


>gi|327314274|ref|YP_004329711.1| hypothetical protein HMPREF9137_2047 [Prevotella denticola F0289]
 gi|326945347|gb|AEA21232.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 1022

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 48/187 (25%)

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT------------ 188
           +  +     +   ++  I+E+L+     E ++    F TP+++V                
Sbjct: 369 NDPDDAEVGIDPEMLGRIFENLL-----EDNKDKGAFYTPKEIVQYMCRESLIAYLQTGQ 423

Query: 189 ---------ALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMNH------- 226
                      +   D        G++        + DP  G+G F    +         
Sbjct: 424 TEEDRERIRRFVTTHDGEQLDGLKGVLDQKLRDVKICDPAIGSGAFPMGLLRELFLCRAA 483

Query: 227 ----VADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQ 277
               VA+  +  K        +G ++E     +      +  +  +   +   N    I 
Sbjct: 484 IEPDVAENAADIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIVDEKSPEALPNLDFKIM 543

Query: 278 QGSTLSK 284
           QG++L +
Sbjct: 544 QGNSLLE 550


>gi|261839299|gb|ACX99064.1| type II R-M system methyltransferase [Helicobacter pylori 52]
          Length = 545

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 43/235 (18%)

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178
            +L K     L  +  +   I  +   + +      + + YE       +        + 
Sbjct: 58  NKLNKYANKSLKSVHNHQELILKYLKILENSFDLEKLGSYYEE---ELSNTTRNLEGIYY 114

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP ++V     L   P D    ++        DP  G+G F+  A+              
Sbjct: 115 TPNEIVE---QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFK 157

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +   +G + +    A+       +R++     D   NI Q         T  +F    +N
Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTN 209

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+GKK+ +++    K+H N         L +  D + LF +   N L+   + G
Sbjct: 210 PPWGKKYNQNQKENFKQHFN---------LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|77163545|ref|YP_342071.1| hypothetical protein Noc_A0028 [Nitrosococcus oceani ATCC 19707]
 gi|254436402|ref|ZP_05049907.1| hypothetical protein NOC27_3374 [Nitrosococcus oceani AFC27]
 gi|76881859|gb|ABA56541.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207087936|gb|EDZ65210.1| hypothetical protein NOC27_3374 [Nitrosococcus oceani AFC27]
          Length = 916

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 49/195 (25%), Gaps = 48/195 (24%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDPTC 214
            +  +      T    +      L               R              ++DP  
Sbjct: 297 EKSRDSLGQHYTSVPNIMKVIRPLFLDKLYADLHKSKGKRRQLEALLVRLARIWVFDPAM 356

Query: 215 GTGGFLTDAMNHVADC-------------GSHHKIPPI----LVPHGQELEPETHAVCVA 257
           G+G FL  A   +                    +I          +G E++   H +   
Sbjct: 357 GSGNFLIIAYKELRRLEMATFRSLQAMSGSGQQEIFMSGIQLSQFYGIEIDDFAHEIAQL 416

Query: 258 GMLIRRLESDPRRD-------------LSKNIQQGSTLSKDLFT-----GKRFHYCLSNP 299
            + +   + +                  + N+ QG++L  D        G    Y   NP
Sbjct: 417 SLWLVEHQMNTLFVKEFGHAEPVLPLKDTANLVQGNSLRMDWQKVCPNDGSAEIYVCGNP 476

Query: 300 PFGKKWEKDKDAVEK 314
           PF     ++   ++ 
Sbjct: 477 PFIGHGSRENSQLDD 491


>gi|227875627|ref|ZP_03993766.1| helicase [Mobiluncus mulieris ATCC 35243]
 gi|227843812|gb|EEJ53982.1| helicase [Mobiluncus mulieris ATCC 35243]
          Length = 1693

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 76/304 (25%), Gaps = 36/304 (11%)

Query: 108  SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT--VPDRVMSNIYEHLIRR 165
            S   + I +    +       +   L K  +  +      D       +M  +Y+    +
Sbjct: 850  SHAMQGILDRLAENQVFET--EREPLEKFYQTMTEKIRAIDNLAGKQEIMRTLYDKFFSK 907

Query: 166  FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGGFLTDAM 224
               ++ +      TP  VV        +     F +  G     + +P  GTG F+T  +
Sbjct: 908  AFPKLGDRLGIVFTPVPVVDYILHSAHEALVKHFGKGLGDEGVAIIEPFLGTGTFITRLL 967

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------LIRRLESDPRRDLSKNIQQ 278
                   S             E+   ++ +    +      +      D        I  
Sbjct: 968  QSGLISPSQLDHKYRHEIFANEIVLLSYYIASINIEQVYREIRLEQGIDEGYVEFPGITL 1027

Query: 279  GSTLS-----------KDLFTGKR---------FHYCLSNPPFGKKWEKDKDAVEKEHKN 318
              T             +D     +             + NPP+    +K  D  +     
Sbjct: 1028 TDTFQLAEGQNQIPCIRDFQANLKRVQAQRAADIQVVVMNPPYSAGQKKANDNNQNLKYP 1087

Query: 319  GELGRFGPGLPKIS---DGSMLF--LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
               GR        S   + + L+                 G  A V +SS +    A   
Sbjct: 1088 WLDGRIADTYAARSSATNKNSLYDSYYRALRWATDRIGQEGVIAFVSNSSFIDGNTADGV 1147

Query: 374  ESEI 377
                
Sbjct: 1148 RLTW 1151


>gi|282901240|ref|ZP_06309168.1| hypothetical protein CRC_02639 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193855|gb|EFA68824.1| hypothetical protein CRC_02639 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 963

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 3/141 (2%)

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
              F   EL  D        +     + R      E +  + TP+ +        L    
Sbjct: 540 IDEFKQEELVIDWEKGEFRKHAKGKFLFRLAGRDREKSASYYTPQSLTKCLVKYALKELL 599

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL---EPETHA 253
              +    +  T+ +P  G+G FL +A++ +A+     K          +    E +   
Sbjct: 600 EGKQADDILELTICEPAMGSGAFLNEAIDQLAETYLERKQKEKGELISHKQAMREQQKIK 659

Query: 254 VCVAGMLIRRLESDPRRDLSK 274
           + +A   +  ++ +P      
Sbjct: 660 MLLADRNVFGIDKNPIAMELA 680


>gi|172036682|ref|YP_001803183.1| hypothetical protein cce_1767 [Cyanothece sp. ATCC 51142]
 gi|171698136|gb|ACB51117.1| hypothetical protein cce_1767 [Cyanothece sp. ATCC 51142]
          Length = 517

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 77/247 (31%), Gaps = 44/247 (17%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +    F TP  V  + T  + +             +T+ DP  G G F         
Sbjct: 18  NYRKEYGQFFTPSLVAKMMTKWVTEN----------KPQTILDPAFGLGVFY-------- 59

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +  S  K+         E++    +          +    +  L+  I            
Sbjct: 60  EEISQIKLQYQWHFTAYEIDDNILSYLDNIENNNNITILNQDYLASEINYYDA------- 112

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
                  + NPP+ +  +             ++G+   G    S+ + +FL+    +L  
Sbjct: 113 ------IICNPPYMRFQKFINRHDILPKIEQQIGKKLGGY---SNIASIFLIKALQQL-- 161

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATY 406
             N  GR A +L       G       EI++ L+EN L++ I+      D+F        
Sbjct: 162 --NLNGRLAFILPFEFFNTGYG----KEIKQTLIENYLLKQIIIFANEKDIFPDATTTIC 215

Query: 407 LWILSNR 413
           + +  N 
Sbjct: 216 ILLCQND 222


>gi|32479387|ref|NP_862240.1| GcrY [Corynebacterium striatum]
 gi|9945797|gb|AAG03371.1| GcrY [Corynebacterium striatum]
          Length = 952

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 61/253 (24%), Gaps = 66/253 (26%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD----DALFKESPGMIRT-------------L 209
             E      +  T +  +      L   +          SP                   
Sbjct: 341 SKEARRSDGEHYTSKANIMKTIGPLFLDELRAEADKLVSSPSTSVAALERFRDSLSELVF 400

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHH--------------------KIPPILVPHGQELEP 249
            D  CG+G FL  A   +    +                      +   I   +G EL  
Sbjct: 401 ADMACGSGNFLLLAYRELRRIETDIIVAIRQRRGETGMSLNIEWEQKLSIGQFYGIELNW 460

Query: 250 ETHAVCVAGMLIRRLESDPRRDLS-------------KNIQQGSTLSKDLF----TGKRF 292
               +    M +   +++     +              +I  G+ L  D           
Sbjct: 461 WPAKIAETAMFLVDHQANKELANAVGRPPERLPIKITAHIVHGNALQLDWADILSASAAK 520

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLELPP 350
            Y   NPPF            +  +  +  R   G   IS    +  +     +  +   
Sbjct: 521 TYIFGNPPF-------LGHATRTAEQAQELRDLWGTKDISRLDYVTGWHAKCLDFFKSRE 573

Query: 351 NGGGRAAIVLSSS 363
              GR A V ++S
Sbjct: 574 ---GRFAFVTTNS 583


>gi|302346800|ref|YP_003815098.1| hypothetical protein HMPREF0659_A7061 [Prevotella melaninogenica
           ATCC 25845]
 gi|302150613|gb|ADK96874.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
           25845]
          Length = 1537

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 40/242 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISDALASTNLQVRRCLDPSMGIGAF---AEAFAKQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + ++    +   +L                  ++    SN PFG     +  
Sbjct: 166 LHPYGKGNIFVQSEPFEAIGELED--------------KDKYDLITSNIPFG-----EFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRASTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    +  Q +
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315

Query: 426 NA 427
             
Sbjct: 316 ET 317


>gi|239826790|ref|YP_002949414.1| Eco57I restriction endonuclease [Geobacillus sp. WCH70]
 gi|239807083|gb|ACS24148.1| Eco57I restriction endonuclease [Geobacillus sp. WCH70]
          Length = 1144

 Score = 43.0 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 20/154 (12%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++   ++NPP+  K+         ++               SD    F+           
Sbjct: 471 KYEVVVTNPPYHNKYNPVLKKFMNDNYKDY----------KSDLYSAFIYRCTQM----T 516

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL 410
              G AA++      F     S   ++R++++EN  I +++ L    F    +    +++
Sbjct: 517 VENGFAALMTP----FTWMFISSHEKLRKYIIENQSISSLIQLEYSAFTEATVPICTFVI 572

Query: 411 SNRKTEERRGKVQL--INATDLWTSIRNEGKKRR 442
            N+        ++L      DL      E  K  
Sbjct: 573 QNQNRTSIGEYIRLEEFKGADLQPIKVKEAVKNN 606


>gi|298207444|ref|YP_003715623.1| Type II restriction enzyme, methylase subunit [Croceibacter
           atlanticus HTCC2559]
 gi|83850080|gb|EAP87948.1| Type II restriction enzyme, methylase subunit [Croceibacter
           atlanticus HTCC2559]
          Length = 1020

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 14/119 (11%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVS------------EGA 174
             GL   +C + S  E   +       ++ +IYE  + +  S               +  
Sbjct: 321 DKGLFQDLCYDISSKESPYNFNSIPVHILGSIYERFLGKVVSIEGGKVDIIQKPEVRKAG 380

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
             F TP+ +V       +               +  D +CG+G FL     ++ D   +
Sbjct: 381 GVFYTPKYIVDYIIDKSVGKLIKGKTPKEIDKLSFADISCGSGSFLIGVYEYLIDYHKN 439


>gi|227513150|ref|ZP_03943199.1| adenine-specific methyltransferase [Lactobacillus buchneri ATCC
           11577]
 gi|227083725|gb|EEI19037.1| adenine-specific methyltransferase [Lactobacillus buchneri ATCC
           11577]
          Length = 356

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 95/336 (28%), Gaps = 51/336 (15%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKIC 137
             F++    +   +     ++  +S I           +  D ++     E A  + +I 
Sbjct: 29  ERFFSVLNETTEIVQKQKDQSYFDSLIE-----VLDTVQSNDVNALDLTDENAKKVSRIY 83

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             F       D      +    +  I +    V     ++    D +      ++     
Sbjct: 84  SKFDR-----DKYDSETLRKAIQMAILK-AIRVDRIQANYQITPDTIANIVGYIISGIFN 137

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
             K       ++ DP  GTG  LT   N +        I       G E +     +   
Sbjct: 138 GQKR-----LSMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIENDDAMFELAAG 187

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
              I+ + ++                         +                     E+ 
Sbjct: 188 SFDIQHIHAELF-----------------HEDAIQNVLAPVVDIAVSDLPVGYYPIDENT 230

Query: 318 NGELGRFGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
            G   R        +DG S +  + +   ++    GG      L  S +F     S   +
Sbjct: 231 KGFNTR-------SNDGHSYVHHLLIEFAMDHVKKGG--YGFFLVPSQIF---KTSEAKQ 278

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412
           + +W+  N  ++ ++ LPT+LF        + IL N
Sbjct: 279 LLKWMQGNVYLQGLLNLPTELFQNKASQKAIMILQN 314


>gi|315149232|gb|EFT93248.1| N-6 DNA Methylase [Enterococcus faecalis TX0012]
          Length = 335

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKNIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSETLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|254520298|ref|ZP_05132354.1| modification methylase [Clostridium sp. 7_2_43FAA]
 gi|226914047|gb|EEH99248.1| modification methylase [Clostridium sp. 7_2_43FAA]
          Length = 587

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 92/312 (29%), Gaps = 45/312 (14%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN----NLESYIASFS 108
             +  K        + + + +K  G       E ++  L    ++     N+++YI    
Sbjct: 274 QELTTKEPDDDQIEVAIAALMKAEGLK---PKEKTIGELLDKASKELKEENIDTYILDAQ 330

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
                +           R +K   L    + F  IE   + +P + +    E +   F  
Sbjct: 331 LLLGNVLAKDKLYIITNR-DKNVSLKDEKEYFELIEKRKNKMPIKYILGETEFMGLDFNV 389

Query: 169 EVSEGAEDFMTPRDVVHLATA--LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
           E        + PR    +     L +  ++            + D   G+G       N+
Sbjct: 390 EEG-----VLIPRGDTEILVEEVLSIINEEDELN--------VCDLCSGSGAIGISIANY 436

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                              +       V    ++   LES  +   S        L + +
Sbjct: 437 RKKINVEE----------IDFYEVPEKVTKKNIIKHGLESRVKFIKS------DLLKEPI 480

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
             GK++   +SNPP+ K    +   +  + K  E      G     D  ++F   +  + 
Sbjct: 481 NQGKKYDVIVSNPPYIK--ADEISNLMDDVKKYEPHTALDG----GDDGLVFYKRIIEES 534

Query: 347 ELPPNGGGRAAI 358
           +   N  G  A 
Sbjct: 535 KTTLNNEGVLAF 546


>gi|227535492|ref|ZP_03965541.1| DNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227186902|gb|EEI66969.1| DNA methyltransferase [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 342

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ++     +E+     S N             +   E    L  +          P+
Sbjct: 28  QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 80

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT ++      +F +       
Sbjct: 81  -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 130

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   GTG  L   MN + +          +  +G + +    AV      +++L+ D 
Sbjct: 131 VADLAVGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 185

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327
                        L   LF        +S+ P G     ++    E     G        
Sbjct: 186 F--------HQDALDNLLFKD--IDVVVSDLPVGYYLVDERAKQFETAAAKGH------- 228

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S    L +      L+      G   +    S +F     +G +    WL ++   
Sbjct: 229 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 276

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           + ++ LP D F        L +L     + +R K
Sbjct: 277 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 310


>gi|303241340|ref|ZP_07327844.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
            CD2]
 gi|302591073|gb|EFL60817.1| DEAD/DEAH box helicase domain protein [Acetivibrio cellulolyticus
            CD2]
          Length = 2109

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 11/127 (8%)

Query: 35   ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-----YNTSEYSLS 89
            I PF  L+ ++  L        + +      N   E  +   G  F     +     S  
Sbjct: 1137 IFPFNFLKYVQSNLSSLLRTFLQMFSEELDDNAKEEIRIFAQGNKFKESPMHKKVLESFE 1196

Query: 90   TLGSTNTRNNLESYIASFSDNAKAIFEDFD---FSSTIARLE-KAGLLYKICKNFSGIEL 145
            +L     R+ L   I   +   K + +      +   I  L+ +   L  + KN +  E+
Sbjct: 1197 SLKQQ--RDALAESIKQLNKLIKELEKKPKDSSYEKEIKELKSEKNALGNVVKNLNNKEV 1254

Query: 146  HPDTVPD 152
                  +
Sbjct: 1255 FNFLSDE 1261


>gi|269929046|ref|YP_003321367.1| hypothetical protein Sthe_3145 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788403|gb|ACZ40545.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 1007

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 68/239 (28%)

Query: 92  GSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVP 151
              + R+++     S     + +F+ F+F      + ++  L                V 
Sbjct: 308 DDDDMRSDIVVPDESIHLILRDLFDRFNF-----TITESTPL-----------DVEVAVD 351

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA--------------------TALL 191
             ++  ++E L+          +  + TP+ +V                           
Sbjct: 352 PEMLGKVFEELV-----TGRHESGSYYTPKPIVAFMCREALKGYLGSILPAEPAAAIERF 406

Query: 192 LDPDDALFKESPGMI------RTLYDPTCGTGGFLTDAMNHVADC--------------- 230
           ++  D      P  +        + DP  G+G +L   ++ + D                
Sbjct: 407 VEEHDPGGLRDPEAVLDALRRVRVCDPAVGSGAYLLGMLHELLDLRQSLFQAQRLDPIST 466

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIR------RLESDPRRDLSKNIQQGSTLS 283
                       +G +L+P    +    + +         E  P  +L   I+QG ++ 
Sbjct: 467 YQRKLEILRNNLYGVDLDPFAVNIAQLRLWLSLAVEFEGSEPQPLPNLDFKIEQGDSIL 525


>gi|311112633|ref|YP_003983855.1| GcrY protein [Rothia dentocariosa ATCC 17931]
 gi|310944127|gb|ADP40421.1| GcrY protein [Rothia dentocariosa ATCC 17931]
          Length = 948

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 42/167 (25%), Gaps = 37/167 (22%)

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV--- 241
            L         D     +        DP CG G FL      + +  +   +        
Sbjct: 370 RLIRNKSTSLKDFDNFLNNLSTHVFCDPACGGGNFLNLTYAKLREIETDVLVEKRNRGGE 429

Query: 242 -----------------PHGQELEPETHAVCVAGMLIRRLESDPRR-------------D 271
                             +G E+      +    M +   +++ R              +
Sbjct: 430 FTASLDISIDQRLSINQFYGFEINWWAAKIAETAMFLVDHQANLRLAQALGDAPNRLPIE 489

Query: 272 LSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           ++ +I   + L  D        K   Y   NPPF     +  + +  
Sbjct: 490 IAAHIIHDNALRLDWKKAIPEPKGKTYIFGNPPFLGDHTRTAEQLAD 536


>gi|265757018|ref|ZP_06090880.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263233517|gb|EEZ19146.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1132

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 59/195 (30%), Gaps = 48/195 (24%)

Query: 127 LEKAGLLYKICKNFSGIELHPD-----TVPDRVMSNIYEHL--IRRFGSEVSEGAEDF-- 177
           L  A  L++I   F+ IE   D        D ++  +YE+   + +   + S    ++  
Sbjct: 71  LPTADELFEIITAFNEIEQDADCGADIWKGDDILGWLYENFNTVEKLALKDSGDKTEYDK 130

Query: 178 -------MTPRDVVHLATA-------LLLDPDDALFKESPGMIR---------------- 207
                   TP+ VV            L + PD     +  G ++                
Sbjct: 131 VSLQSQVYTPQWVVKFLVDNTLGKMYLEMYPDSNFIYDENGKVKYLIANAPISQMRHPKK 190

Query: 208 ----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                L DP CG+G FL  A     D   +           +++      +    +    
Sbjct: 191 LEELKLIDPACGSGNFLIYAFLLFYDLYLNQIDQYDADYSRRDI---PKLIVENNLY--G 245

Query: 264 LESDPRRDLSKNIQQ 278
           ++ D R      I  
Sbjct: 246 VDLDERAVQLTQIAL 260


>gi|257440759|ref|ZP_05616514.1| putative Type II restriction enzyme, methylase subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257196733|gb|EEU95017.1| putative Type II restriction enzyme, methylase subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 1189

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      E +  + TP  +        L            +  T+ +P  G+  FL 
Sbjct: 127 FIYRLAGREREKSASYYTPEVLTKCLVKYALKELLKDKSADDILHLTICEPAMGSAAFLN 186

Query: 222 DAMNHVADCGSHHKIPPILVP--HGQELEP-ETHAVCVAGMLIRRLESDPRRDLSKNI-Q 277
           +A+N +A+     K         +       +   + +A   +  ++ +P       +  
Sbjct: 187 EAINQLAEAYISRKEQETGEIIGYEDRFNQLQKVKMFIADRNVYGVDLNPVAVELAEVSL 246

Query: 278 QGSTLSKDLF 287
             +T+  + F
Sbjct: 247 WLNTIYPNGF 256


>gi|218533473|ref|YP_002424288.1| methylase [Methylobacterium chloromethanicum CM4]
 gi|218525776|gb|ACK86360.1| methylase [Methylobacterium chloromethanicum CM4]
          Length = 937

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 32/130 (24%), Gaps = 34/130 (26%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------------VPHGQEL 247
               +DP CG G FL  A   +    +                            +G E+
Sbjct: 356 GFRFFDPACGCGNFLIIAYRELRALETDVLKELNPSGQRTLLDVATLSKVDVGQFYGIEI 415

Query: 248 EPETHAVCVAG--MLIRRLESDPRRD-----------LSKNIQQGSTLSKDL---FTGKR 291
                 +      M+   + +    +            S +I  G  L  D         
Sbjct: 416 GEFPARIAEVALWMMDHIMNNRLSLEFGQAYARIPLKSSPHISCGDALEVDWTKVLPPAE 475

Query: 292 FHYCLSNPPF 301
             +   NPPF
Sbjct: 476 CSFVFGNPPF 485


>gi|67920716|ref|ZP_00514235.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
 gi|67856833|gb|EAM52073.1| N-6 DNA methylase [Crocosphaera watsonii WH 8501]
          Length = 119

 Score = 43.0 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATD 429
              ++ I+  LL    +  IV LP  +F   T+I T L   +     E    +       
Sbjct: 7   EGVKTRIKEKLLSECNLHTIVRLPNGVFNPYTSIKTNLLFFTKG---ESTKNIWFHE--H 61

Query: 430 LWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
            +        K + I  ++       + +RE  +F+  +    
Sbjct: 62  PYPPGYKSYSKTKPIKIEEFAAEKAWWNNREENEFAWCVSIEE 104


>gi|317482924|ref|ZP_07941929.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316915613|gb|EFV37030.1| LOW QUALITY PROTEIN: hypothetical protein HMPREF0177_01324
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 1899

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 65/252 (25%), Gaps = 59/252 (23%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            +    +     + TP  VV      L                 + +P CGTG F+    
Sbjct: 69  EYTQARASTLTAYYTPGPVVKAMWDALDIG---------SAPIQVLEPGCGTGNFMAGIP 119

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
            ++                G EL+P +  +  A             +    I        
Sbjct: 120 ENIKAN-----------VSGVELDPISARIAAA------------LNPDATILNAD--LA 154

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           D      F   + N P+      D    +     G   R              F+    +
Sbjct: 155 DCTIHPGFDLTIGNVPYSGDISLDYRTTD-----GGTSRLPLH-------DY-FIERSVD 201

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L      GG A ++ S   L           +R  L     +   V LP+  F     T
Sbjct: 202 ALRP----GGVAMLLTSRYTL-----DKRSETMRADLARKAELVGAVRLPSSTFARQAGT 252

Query: 402 NIATYLWILSNR 413
              T + +L  R
Sbjct: 253 EAVTDVLVLRRR 264


>gi|257451606|ref|ZP_05616905.1| hypothetical protein F3_00982 [Fusobacterium sp. 3_1_5R]
 gi|317058174|ref|ZP_07922659.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
 gi|313683850|gb|EFS20685.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
          Length = 211

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 51/160 (31%), Gaps = 22/160 (13%)

Query: 118 FDFSSTIARL--------EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
            D +  I +L            LL  +       ++  + +        Y+     F SE
Sbjct: 1   MDINKQIDQLIGVTESYKAPEKLLEIVLDYHRLKKVTLEMLKAHNYKMDYDWFHEYFQSE 60

Query: 170 VS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +  +   TP  + +L   L           +      +Y+P CGTGG +    N  
Sbjct: 61  HADRKNNKQDFTPNSIGNLLIRL-----------NRKTEGIIYEPACGTGGIIIQNWNVA 109

Query: 228 ADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLES 266
            +        P    +  +EL   T    +  + +R + +
Sbjct: 110 REQYGILHFNPNDRLYICEELTDRTIPFLLFNLALRGVNA 149


>gi|317505739|ref|ZP_07963616.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663144|gb|EFV02934.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 290

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 73/228 (32%), Gaps = 55/228 (24%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS---- 232
           F T   +V      L   D          IR   DP+ G G F       V    +    
Sbjct: 105 FYTDTRIVSAIAEALTITDVE--------IRQCLDPSAGMGAFAEIFAKRVGMVDAMEKD 156

Query: 233 --HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               +I   + P+GQ             +++R+   +   +L                  
Sbjct: 157 LLTARISQSIHPYGQG-----------NIIVRQAPFESIGELED--------------KD 191

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           ++    SN PFG     D    ++E+  G+          I +       +   K     
Sbjct: 192 KYDLVTSNIPFG-----DFMVYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCI 239

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
             GG  A + S   L + R       IRR+L++N  + + + LP+ LF
Sbjct: 240 KEGGLLAFITSQGVLDSPRNE----AIRRYLMQNSRLISALRLPSSLF 283


>gi|332361300|gb|EGJ39104.1| SNF2 family protein [Streptococcus sanguinis SK1056]
          Length = 2273

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 68/276 (24%), Gaps = 59/276 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + +          + T   ++               +        + DP+ GTG F    
Sbjct: 667 KEYTDMKQSSLTAYYTDPHLIRQMWE--------KLERDGFTGGKILDPSMGTGNFFAAM 718

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             H+ +             +G EL+  T  +                  + +I+      
Sbjct: 719 PKHLRENSE---------LYGVELDTITGVIAK------------YLHPNSHIEV-KGFE 756

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F    F   LSN PF              +      R+        D   +   +  
Sbjct: 757 TIAFNDNSFDLILSNVPFA-------------NIRIVDSRY--------DKPYMIHDYFV 795

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K     + GG+ AI+        G        I + + E       V LP   F     
Sbjct: 796 KKSLDLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDSAFKAIAG 850

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           TN+ T +        +         + +  +     
Sbjct: 851 TNVTTDMLFFQKHMDKGYVADDLAFSGSIRYDKDDR 886


>gi|110669158|ref|YP_658969.1| adenine-specific DNA methyltransferase [Haloquadratum walsbyi DSM
           16790]
 gi|109626905|emb|CAJ53374.1| adenine-specific DNA methyltransferase [Haloquadratum walsbyi DSM
           16790]
          Length = 455

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 68/231 (29%), Gaps = 46/231 (19%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               TP  +       L           P     +  P CG G F++    +        
Sbjct: 3   GHVPTPDRLADKMVEKLFRD------NPPEDGERILYPGCGRGPFISAVHRY-----CDS 51

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P+      E++PE +                 +D      +      D     +F Y
Sbjct: 52  NDFPVPEGVAVEIDPELYEDAR----------KRHKDKEVEFLERD-FLTDSDGLDKFEY 100

Query: 295 CLSNPPF--GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
            L NPP+   +  E+D+    +       GRF   +        LF     + L    + 
Sbjct: 101 VLGNPPYIPIEGLEEDEKGRYRREFETAEGRFDLYV--------LFFEQAIDLL----SS 148

Query: 353 GGRAAIVLSS--------SPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
           GGR   V           + L    A SG  EI    ++ D  E +V  PT
Sbjct: 149 GGRLCFVTPEKFEYTETTAALRRVLASSGVEEI--HHVDEDSFEGLVTYPT 197


>gi|110347115|ref|YP_665933.1| methyltransferase type 11 [Mesorhizobium sp. BNC1]
 gi|110283226|gb|ABG61286.1| Methyltransferase type 11 [Chelativorans sp. BNC1]
          Length = 1516

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 50/217 (23%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + +P  GTG F       + D         +    G EL+P T  +             
Sbjct: 7   RVLEPGIGTGLFPALMPEGLRD---------VSHVTGIELDPVTARIAR----------- 46

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
                   I  G   ++       F   + NPPF  +  +   A                
Sbjct: 47  -LLQPQARIITGD-FARTELPA-SFDLAIGNPPFSDRTVRSDRAYRSLSLRLHDY----- 98

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                     F+    + L+     G  AA V S     +G     +   R  + ++  +
Sbjct: 99  ----------FIARSIDLLKP----GAFAAFVTS-----SGTMDKADVCAREHIAKSADL 139

Query: 388 EAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
            A + LP   F     TN+   +     RK  E  G+
Sbjct: 140 IAAIRLPEGSFRADAGTNVVVDILFFRKRKAGEPEGE 176


>gi|327314381|ref|YP_004329818.1| helicase C-terminal domain-containing protein [Prevotella denticola
           F0289]
 gi|326946015|gb|AEA21900.1| helicase C-terminal domain protein [Prevotella denticola F0289]
          Length = 2093

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 79/232 (34%), Gaps = 48/232 (20%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           +++            IR   DP+ G G F          ++ +       +I   + P+G
Sbjct: 111 IVNAIADALSSVDVPIRRCLDPSAGMGAFTETFAKKAGMVDAMEKDLLTARISQAIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q             +++R++  +   +                   ++    SN PFG  
Sbjct: 171 QG-----------NIIVRQVPFEAIGEFED--------------KDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D++  + + K+         +      +  F+     K       GG  A + S   
Sbjct: 206 MVYDREYSKGKGKDILKRESTRAIH-----NYFFV-----KGLDCIKEGGLMAFITSQGV 255

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           L + +       IRR+L++N  + + + LP+ +F     T + + L +L  +
Sbjct: 256 LDSPKNE----AIRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQ 303


>gi|325859541|ref|ZP_08172679.1| hypothetical protein HMPREF9303_0400 [Prevotella denticola CRIS
           18C-A]
 gi|325482944|gb|EGC85939.1| hypothetical protein HMPREF9303_0400 [Prevotella denticola CRIS
           18C-A]
          Length = 1509

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 40/242 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISDALASTNLQVRRCLDPSMGMGAF---AEIFARQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H    + + +R    +   +L                  ++    SN PFG     D  
Sbjct: 166 LHPYGKSNVFVRNEPFEAIGELE--------------NKDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G           I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGRDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    +  Q +
Sbjct: 260 E----AIRRYLMQNSHLISALRLPSGMFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315

Query: 426 NA 427
             
Sbjct: 316 ET 317


>gi|317011733|gb|ADU85480.1| hypothetical protein HPSA_07665 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 66/415 (15%), Positives = 123/415 (29%), Gaps = 80/415 (19%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 957  EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1008

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1009 -------AHAPSDKNYRFIGTELDP--------------ISANISQFLYPNQVIQNTALE 1047

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   + NPP+G       +  E  +++                   FL     
Sbjct: 1048 NHHFYQEYDAFVGNPPYGNHKIYSSNDKELSNESVHNY---------------FLGKAIK 1092

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+  S  F         + R ++++N      + LP  +F  T   
Sbjct: 1093 ELKDD----GIGAFVV--SSWFMDGKNP---KTREYIVQNATFLGAIRLPNSVFKATGTE 1143

Query: 405  TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                +                K     GK+  I++ D  T    +  +        + +I
Sbjct: 1144 VSSDIVFFKKGVDEAIHQSFTKAMPYYGKI--IDSLDDDTLFALQNNRFDSFIPSDQLKI 1201

Query: 453  LDI---YVSRENGKFSRML---DYRTFGY----RRIK---VLRPLRMSFILDKTGLARLE 499
            ++    +   +  K  R     D   FGY     +I    + R    +  L++  L    
Sbjct: 1202 VNAIASHFGFKQEKLQRWYEKIDTANFGYSEQDYKIIKDFMDRVGENNINLNEQTLNEYF 1261

Query: 500  ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             +     L  L         +   +QIY Y       K    S        K  K
Sbjct: 1262 INHPENILGHLSLEKTRYSFEINGEQIYKYELQALENKSLDLSQALSQAIEKLPK 1316


>gi|225027237|ref|ZP_03716429.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
 gi|224955437|gb|EEG36646.1| hypothetical protein EUBHAL_01493 [Eubacterium hallii DSM 3353]
          Length = 2685

 Score = 43.0 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 78/293 (26%), Gaps = 63/293 (21%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + S V        T   ++     +L                 + +P+CGTG F    
Sbjct: 1182 EEYRSAVGSVLNAHYTQPVLIKAMYQVLA--------GLGFTKGRILEPSCGTGNFFGLL 1233

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-L 282
               +               +G EL+  +  +                    NI+  +T  
Sbjct: 1234 PESM----------NKSTLYGVELDQMSAKIA------------GYLYPEVNIE--NTGF 1269

Query: 283  SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             +  +    F   + N PFG     D           +                 F    
Sbjct: 1270 ERTDYPDGYFDIAVGNVPFGDYRVNDPVYNRHGFLIHDY----------------FFAKT 1313

Query: 343  ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
             +KL      GG AA + +   +          ++R++L +   +   V LP   F    
Sbjct: 1314 LDKLRP----GGVAAFITTKGTMDKENT-----KVRQYLFKRAELLGAVRLPNTAFKNAG 1364

Query: 403  IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                  IL  +K E+      + ++  +  +   +G             IL  
Sbjct: 1365 TKVTSDILFLQKREKE-----IADSEWISVTEDAQGIPVNSYFAAHPEMILGT 1412


>gi|291526662|emb|CBK92248.1| DNA methylase [Eubacterium rectale M104/1]
          Length = 2550

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 85/325 (26%), Gaps = 73/325 (22%)

Query: 117  DFDFSSTIARLEKAGLLY-----KICKNFSGIELHPDTVPDRVMSNIYEH-----LIR-- 164
            + D   T+ ++E    L      K    F G         +       E+     L+   
Sbjct: 913  NMDAIRTLKQIESENRLATPEEQKTLSKFVGWGGLSQAFDENNAGWSKEYAELKDLLSDE 972

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  +     F T  ++     + L+        +       + +P+ G G F     
Sbjct: 973  EYSAARATVNNAFYTSPEIAMCINSALV--------QFGFRGGNVLEPSMGIGNFFGSM- 1023

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                              +G E++  +  +              +   + NI   +    
Sbjct: 1024 ---------PAPMQRSKLYGVEIDSISGRIAK------------QLYQNANI-SITGFEN 1061

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +    F   + N PFG     D    +   +  +                        
Sbjct: 1062 TTYPDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY--------------------FLA 1101

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            K       GG  A++ +   L           IR++L E   +   V LP   F     T
Sbjct: 1102 KALDQVRPGGMVAVITTKGTLDKANPT-----IRKYLAERAELVGAVRLPNTAFKDNAGT 1156

Query: 402  NIATYLWILSN--RKTEERRGKVQL 424
             +   +  L    RK +     V L
Sbjct: 1157 EVTADILFLQKRERKIDIEPDWVHL 1181


>gi|322412357|gb|EFY03265.1| helicase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 1998

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 52/390 (13%), Positives = 103/390 (26%), Gaps = 76/390 (19%)

Query: 57  EKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFE 116
           ++  A     ++ E         F+      L+      TR+ +E+     +  A  + +
Sbjct: 564 KQEEALSEDELEPEVTETPPTTDFHFPE--DLTDFYPKTTRDKVET-----NVAAIRLVK 616

Query: 117 DFDFSSTIARLEKAGLLYKIC-------KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
             +     A   +  LL K         + F           + + + + E   + +   
Sbjct: 617 SLESEHRQATPSEQELLAKYVGWGGLANEFFDEYNPKFSKEREALKTLVTE---KEYSDM 673

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
                  + T   ++               ++       + DP+ GTG F     NH+ +
Sbjct: 674 KQSSLTAYYTDPLLIREMWN--------KLEQDGFTGGKILDPSMGTGNFFAAMPNHLRE 725

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289
                        +G EL+  T  +                  + +I+         F  
Sbjct: 726 NSE---------LYGVELDTITGTIAK------------HLHPNSHIEV-KGFETVAFNE 763

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349
             F   LSN PF              +      R+        D   +   +   K    
Sbjct: 764 NSFDLVLSNVPFA-------------NIRIADSRY--------DKPYMIHDYFVKKSHDL 802

Query: 350 PNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATY 406
            + GG+ AI+        G        I + + E       V LP   F     TN+ T 
Sbjct: 803 VHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDTAFKAIAGTNVTTD 857

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRN 436
           +        +         + +  +     
Sbjct: 858 MLFFQKHVDKGYVADDLAFSGSIRYDKDDR 887


>gi|219872308|ref|YP_002476709.1| adenine specific DNA methyltransferase [Borrelia garinii PBr]
 gi|219694353|gb|ACL34878.1| adenine specific DNA methyltransferase [Borrelia garinii PBr]
          Length = 487

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 33/215 (15%)

Query: 49  EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS 108
           E     +  K+          E+ +K      ++ SE+S  ++  T T     +Y+ + S
Sbjct: 192 EENIDNIELKFKKPNILTTTYETLIKAIYRKGFDISEFS-DSIAQTITYGLFIAYLNNKS 250

Query: 109 D------NAKAIFE-DFDFSSTIARLEKAG-----------LLYKICKNFSGIE--LHPD 148
                  N K     +F     I ++ +             +L ++    + I+  +   
Sbjct: 251 GVSIDFLNIKDFIPTNFYLMQNILKIIENISKKDEFSNINWILKELISTVNNIDSKVVFK 310

Query: 149 TVPDRVMS--------NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFK 200
            +    +           YE+ + ++   +      + TP+ +V      L +     FK
Sbjct: 311 QLSFDKLGLTLKDPYLYFYENFLAKYDRSLRSSKGVYYTPKSMVGFIVRSLHEILKKGFK 370

Query: 201 ESPGMIR----TLYDPTCGTGGFLTDAMNHVADCG 231
            + G        + D   GTG FL + +  + D  
Sbjct: 371 LNNGFANKNEVKVLDFATGTGTFLLEVIKTILDNH 405


>gi|325270567|ref|ZP_08137167.1| hypothetical protein HMPREF9141_2377 [Prevotella multiformis DSM
           16608]
 gi|324987143|gb|EGC19126.1| hypothetical protein HMPREF9141_2377 [Prevotella multiformis DSM
           16608]
          Length = 1128

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 100/336 (29%), Gaps = 79/336 (23%)

Query: 29  TDFGKVILPFTLLRRLECALEP-----------TRSAVREKYLAFGGSNIDLESFVKV-A 76
            ++   IL       L CA+E            T+  V+  Y      +I  +  V + +
Sbjct: 260 GNYYNAILQNLFFATLNCAIEDENGNTRKFATSTKRDVKTLYRYAEMFSISEQEIVNLFS 319

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDN----------AKAIFEDFDFSSTI 124
              F N   +    L  T   + +E       FS N           +A+  +  F    
Sbjct: 320 EVPFLNGGLF--ECLDKTRYIDGVEQCYNFDGFSRNDARFADGRYKHRAVVPNILFFE-- 375

Query: 125 ARLEKAGLLYKICK-NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AE 175
               + GLL  + + NF+  E  P+         ++  ++E+L+  +  E  E     + 
Sbjct: 376 ---PEKGLLSILSRYNFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSG 432

Query: 176 DFMTPRDVVHLATA---LLLDPDDALFKE--------------------SPGMIRTLYDP 212
            F TPR++V+       +    ++   +                            + DP
Sbjct: 433 SFYTPREIVNYMVDESLIAYLGNNDFVRSLFSYDFTFDKAKSNEYLKIADKLKAVKILDP 492

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIR 262
            CG+G F    +N + D          +            +G +++     +      I 
Sbjct: 493 ACGSGAFPMGLLNRIIDILERISPNEDIYELKLSVIENCLYGCDIQSIAAQITKLRFFIS 552

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            + +  +     N                 ++  +N
Sbjct: 553 LICNCEKDASKPN------FGIPTLPNLETNFVSAN 582


>gi|325263025|ref|ZP_08129760.1| SNF2 family protein [Clostridium sp. D5]
 gi|324031418|gb|EGB92698.1| SNF2 family protein [Clostridium sp. D5]
          Length = 2244

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 64/256 (25%), Gaps = 60/256 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  S       T   V+      +                 + +P+ G G F    
Sbjct: 956  EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1007

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+P +  +              +     +I  G    
Sbjct: 1008 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1043

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG+    DK   +                              
Sbjct: 1044 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFSIHNY--------------------FF 1083

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A V            + +S +RR+L +   +   + LP + F     
Sbjct: 1084 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNNAFKANAG 1138

Query: 401  TNIATYLWILSNRKTE 416
            T + + +  L  R   
Sbjct: 1139 TEVVSDIIFLQKRDRP 1154


>gi|301066055|ref|YP_003788078.1| adenine-specific DNA methylase [Lactobacillus casei str. Zhang]
 gi|300438462|gb|ADK18228.1| Adenine-specific DNA methylase [Lactobacillus casei str. Zhang]
          Length = 336

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 52/334 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ++     +E+     S N             +   E    L  +          P+
Sbjct: 22  QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT ++      +F +       
Sbjct: 75  -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   GTG  L   MN + +          +  +G + +    AV      +++L+ D 
Sbjct: 125 VADLAIGTGNLLFAVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPG 327
                        L   LF        +S+ P G     ++    E     G        
Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVGYYPVDERAKQFETAAAKGH------- 222

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
               S    L +      L+      G   +    S +F     +G +    WL ++   
Sbjct: 223 ----SYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFRSEEAAGLTA---WLAKSTYF 270

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
           + ++ LP D F        L +L     + +R K
Sbjct: 271 QGLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|315174324|gb|EFU18341.1| N-6 DNA Methylase [Enterococcus faecalis TX1346]
          Length = 335

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 102/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G           +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGYKI------SGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|315143413|gb|EFT87429.1| N-6 DNA Methylase [Enterococcus faecalis TX2141]
          Length = 335

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYNTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|288926883|ref|ZP_06420784.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
 gi|288336364|gb|EFC74744.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
          Length = 1109

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 55/369 (14%), Positives = 115/369 (31%), Gaps = 55/369 (14%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM------NHVADCGSHHKIPPILVPHG 244
           ++      F      IR   DP+ G G F           + +       +I   + P+G
Sbjct: 111 IVAAIADTFSSVDVPIRRCLDPSAGMGAFTEIFATKAGTVDAMEKDLLTARISQAIHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           Q             +++R+   +   +L                  ++    SN PFG  
Sbjct: 171 QG-----------NIIVRQAPFEAIGELED--------------KDKYDLITSNIPFG-- 203

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D    ++E+  G+          I +       +   K       GG  A + S   
Sbjct: 204 ---DFMVYDREYSKGKDILKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR--KTEERR 419
           L + +       IRR+L++N  + + + LP+ +F     T + + L +L  +  KT    
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISALRLPSGMFSENAGTEVGSDLIVLQKQSGKTISEG 309

Query: 420 GKVQLINA-TDLWTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476
            + Q + + +       +   K   + D + + I    I   R  G+         + + 
Sbjct: 310 MEQQFVASVSAPIAEGSSVVFKHNSLFDGEWKDIAHRTIATERTMGRDPYGKPAWEYHFD 369

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFV 536
                    +   L      R +  +    +    +    + +K + +        E   
Sbjct: 370 GSIEDLAESIRTQLSLEIEQRFDRKLYETGIPMTEEERQKEAVKQLRKLGVTVDLPEEEP 429

Query: 537 KESIKSNEA 545
           K   +++ A
Sbjct: 430 KTDKEADNA 438


>gi|162451514|ref|YP_001613881.1| hypothetical protein sce3242 [Sorangium cellulosum 'So ce 56']
 gi|161162096|emb|CAN93401.1| hypothetical protein sce3242 [Sorangium cellulosum 'So ce 56']
          Length = 1401

 Score = 43.0 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 27/141 (19%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA- 223
           E         TPR +        L+P  A   E+    +     + DP  G+G FL  A 
Sbjct: 582 EERRRTGSHYTPRSLTEKVVRRTLEPLLACLGEARTPEQILQLKICDPAMGSGAFLVAAC 641

Query: 224 ---------------------MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                                  H        ++      +G +       +    + + 
Sbjct: 642 RELAGEIVSAWTRQGELARIIEQHGDAHLHARRLVAQQCLYGVDKNAAAVELAKLSLWLV 701

Query: 263 RLESDPRRDLSKN-IQQGSTL 282
            L          + ++ G +L
Sbjct: 702 TLSRTLPFTFVDHALRHGDSL 722


>gi|227514565|ref|ZP_03944614.1| DNA methyltransferase [Lactobacillus fermentum ATCC 14931]
 gi|227087122|gb|EEI22434.1| DNA methyltransferase [Lactobacillus fermentum ATCC 14931]
          Length = 289

 Score = 43.0 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+                 + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI------EQVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      +        +DL   +     +        +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDLVVADLPVGY--- 154

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                   ++      R   G       S +  + +   +     GG    + L    LF
Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLLPGGF--GVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G   +  W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETTG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|198451283|ref|XP_001358309.2| GA17389 [Drosophila pseudoobscura pseudoobscura]
 gi|198131417|gb|EAL27447.2| GA17389 [Drosophila pseudoobscura pseudoobscura]
          Length = 4819

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 44/138 (31%), Gaps = 19/138 (13%)

Query: 36  LPFTL--------LR--RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE 85
            P           LR  R    LE  +  + +    +  S + L +    AG + ++   
Sbjct: 465 FPLLFQGDADEGLLRINRTSNVLEFFKQRMLQYKERYASSQVLLPAL-PGAGATAHSPPP 523

Query: 86  YSLSTLGSTNTRNNLESYIASFSD---NAKAIFEDFDFSSTIARLE----KAGLLYKIC- 137
             L  L      +     +  F       + +FE       + +LE    +  +L +   
Sbjct: 524 DDLQQLWRFCNEDVFGQTLDGFLAQLSELRQVFEAAVQFQQLEKLEIGGLRGKMLTERIR 583

Query: 138 KNFSGIELHPDTVPDRVM 155
           + F+  ++  +   +  +
Sbjct: 584 EIFNEFKVLFEQWSNVDI 601


>gi|190404406|ref|YP_001961037.1| rcorf62 [Agrobacterium rhizogenes]
 gi|158322202|gb|ABW33619.1| rcorf62 [Agrobacterium rhizogenes]
          Length = 1702

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 76/288 (26%), Gaps = 59/288 (20%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  ++    +          +        + +P  GTG F     
Sbjct: 158 DYASLARCTQYAHFTPEFIIRAIWS--------GLQRLGWCGGRMLEPGIGTGLFPALMP 209

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
               D              G EL+P T  +                     I  G     
Sbjct: 210 AAFRD---------RTFVTGVELDPVTARIVK------------LLQPKARIINGDFARA 248

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL     +   + NPPF  +  +                              F+    +
Sbjct: 249 DLAP--IYDLAIGNPPFSDRTVRSDRTYRSLGLRLHDY---------------FITRSID 291

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L+     G  AA V SS  +    A       R ++ +   + A + LP   F     T
Sbjct: 292 LLKP----GALAAFVTSSGTMDKADAT-----AREYIAKTADLIAAIRLPEGSFRRDAGT 342

Query: 402 NIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKR-RIINDDQ 448
           ++   L     RK  E    +  ++  ++    ++EG  R      + 
Sbjct: 343 DVVVDLLFFRKRKVGEPTSDLSWLDLEEVRPESQDEGAVRVNRWFAEH 390


>gi|327405024|ref|YP_004345862.1| hypothetical protein Fluta_3048 [Fluviicola taffensis DSM 16823]
 gi|327320532|gb|AEA45024.1| hypothetical protein Fluta_3048 [Fluviicola taffensis DSM 16823]
          Length = 1171

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 39/187 (20%)

Query: 104 IASFSDNAKA-IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           +   S+N    I  D  F S    LEK    Y    + + +     +V   ++  I+E+L
Sbjct: 319 LTGLSENIDTLIISDKWFQSFFEELEK----YNFTIDENSVTDVEVSVDPEMLGRIFENL 374

Query: 163 IRRFGSEVSEG----AEDFMTPRDVVHLA-----------------------------TA 189
           +     +  E        F TPR++V                                  
Sbjct: 375 LAEIDPDSGETARKATGSFYTPREIVDYMATESLVQYIHNKTTISQHKLRTVFKMSENAE 434

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           +  +  D +          + DP CG+G F    +  +           +     Q +  
Sbjct: 435 IEFNESDRIGILKALDTVKILDPACGSGAFPMGVLQKIVLALQKLDKNAVWWI-KQRINE 493

Query: 250 ETHAVCV 256
             +A   
Sbjct: 494 NKNATAR 500


>gi|326803624|ref|YP_004321442.1| hypothetical protein HMPREF9243_1205 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651385|gb|AEA01568.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 346

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 50/369 (13%), Positives = 108/369 (29%), Gaps = 41/369 (11%)

Query: 86  YSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           ++     +  +   LE +Y+ +  +  + +      +  I       ++ ++ K +   +
Sbjct: 10  FTYLHEATEKSAQALEMTYVEAIHETLQNLL--LGSAQQINGAPDDQVIKELNKLYQKSQ 67

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                +      NI + L+     +    A    TP D + L    L        + S  
Sbjct: 68  WQ--ALDQEAKHNIIQWLLIEGVKKQEIQANYQATP-DAIALIIGYLAFRLVESNQNSLE 124

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               L+DP  GTG   +       D          ++  G + +    ++    M +  L
Sbjct: 125 KSINLFDPCFGTGNLWSLVAKTFTDQDYQ------VLGAGVDNDDLMLSIGEKAMALLGL 178

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE-HKNGELGR 323
                   +     G  L             +++ P G   +       K   K  E G 
Sbjct: 179 SPKLTLADA----LGDLLVDP------CQVIIADLPIGYYPQDQVAQTFKSGAKFIEEGS 228

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
                        L +    + LE    G      ++  S L          ++ + + E
Sbjct: 229 HAY-------AHYLLIEQGIHYLEDNAWGL----FLVPKSTL----TDPTLPQLMQGINE 273

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATDLW--TSIRNEGKK 440
              ++A + LP  LF        + I+  +    ++  +V + N  D      ++    +
Sbjct: 274 TAYLQAFINLPQSLFQNEFSQKSILIVQKQGDRAKQSDQVLIGNIPDFKAVDDMKQFTSQ 333

Query: 441 RRIINDDQR 449
                D   
Sbjct: 334 FNDWLDKHI 342


>gi|317009100|gb|ADU79680.1| type II adenine specific methyltransferase [Helicobacter pylori
           India7]
          Length = 545

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 43/235 (18%)

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178
            +L K     L  +  +   I  +   + +      +   YE       +        + 
Sbjct: 58  NKLNKYANKSLKGVHNHQELILKYLKILENSSDLEKLGYSYEE---ELSNTTRNLEGIYY 114

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V     L   P D    ++        DP  G+G F+  A+              
Sbjct: 115 TPNQIVE---QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFK 157

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +   +G + +    A+       +R++     D   NI Q         T  +F    +N
Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDCL-NIAQKD-FLNLKHTP-QFDCIFTN 209

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+GKK+ +++    +  K          L +  D + LF +   N L+   + G
Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFVASLNCLKENAHLG 255


>gi|153864485|ref|ZP_01997373.1| DNA methyltransferase [Beggiatoa sp. SS]
 gi|152146020|gb|EDN72627.1| DNA methyltransferase [Beggiatoa sp. SS]
          Length = 479

 Score = 42.7 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 98/355 (27%), Gaps = 80/355 (22%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
           L  L +     +++  +    ++  AI    D ++ +    K         +F       
Sbjct: 8   LRRLFNQIVGIDIDDRLVWAVEHLVAILNHTDIAAILKDFGKRTRQTDPVVHF------- 60

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
                      YE  ++ +  ++ E    + TP  VV      +       FK   G+  
Sbjct: 61  -----------YETFLKHYDPKMREMRGVYYTPEPVVSYIVRSVDGLLKQRFKLRDGLAD 109

Query: 208 -----------TLYDPTCGTGGFLTDAMNHVADCGSHHK--------IPPILVPHGQELE 248
                       + DP  GTG FL    NH+       K           +   HG EL 
Sbjct: 110 NSRLESGLHKVQILDPAVGTGTFLYAVFNHIFAQFMKTKGMWSAYVAEHLLPRVHGFELL 169

Query: 249 PETHAVC--VAGMLIRRLESDPRRDLSKNIQQGSTLSK---------------------- 284
              + V     G+ ++ +  +   D    I   ++L                        
Sbjct: 170 MAPYTVAHIKLGLQLQEMGYEFESDERLRIFLTNSLENAHETGSTPTLPFAEWLVNEGRA 229

Query: 285 --DLFTGKRFHYCLSNPPFGKKWEKDKDA-------VEKEHKNGELGRFGPGLPKISDGS 335
             ++         + NPP+        D        ++          F      +S+ +
Sbjct: 230 ASEVKQDSPVMVIIGNPPYSGHSLNKGDWITHLLRGIDNNLDAEIANYFEVDGKPLSERN 289

Query: 336 MLFLMHLANKL------ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             +L     K        +   G G    + +   L N         +R+ L+++
Sbjct: 290 PKWLQDDYVKFIRFAQWRIESTGYGILGFITNHGYLDNPTFRG----MRQALMQD 340


>gi|299142629|ref|ZP_07035759.1| type IIS restriction endonuclease [Prevotella oris C735]
 gi|298575844|gb|EFI47720.1| type IIS restriction endonuclease [Prevotella oris C735]
          Length = 917

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 99/336 (29%), Gaps = 79/336 (23%)

Query: 29  TDFGKVILPFTLLRRLECALEP-----------TRSAVREKYLAFGGSNI-DLESFVKVA 76
            ++   IL       L CA+E            T+  ++  Y      +I + E     +
Sbjct: 260 GNYYNAILQNLFFATLNCAIEDENGNTRKFAISTKRDIKTLYRYAEMFSISEQEVINLFS 319

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLES--YIASFSDN----------AKAIFEDFDFSSTI 124
              F N   +    L  T  R+ +E       FS N           +A+  +  F    
Sbjct: 320 EVPFLNGGLF--ECLDKTRYRDGVEQCYNFDGFSRNNARFADGRYKHRAVVPNILFFE-- 375

Query: 125 ARLEKAGLLYKICK-NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AE 175
               + GLL  + + NF+  E  P+         ++  ++E+L+  +  E  E     + 
Sbjct: 376 ---PEKGLLSILSRYNFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSG 432

Query: 176 DFMTPRDVVHLATA---LLLDPDDALFKE--------------------SPGMIRTLYDP 212
            F TPR++V+       +    ++   +                            + DP
Sbjct: 433 SFYTPREIVNYMVDESLIAYLGNNDFVRSLFSYDFTFDKAKSNEYLKIADKLKAVKILDP 492

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETHAVCVAGMLIR 262
            CG+G F    +N + D          +            +G +++     +      I 
Sbjct: 493 ACGSGAFPMGLLNRMIDILERISPNEDIYELKLSIIENCLYGSDIQSIAAQITKLRFFIS 552

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
            + +  +     N                  +  +N
Sbjct: 553 LICNCEKDASKPN------FGIPTLPNLETKFVSAN 582


>gi|308061808|gb|ADO03696.1| type II adenine specific methyltransferase [Helicobacter pylori
           Cuz20]
          Length = 545

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE  +             + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSYYEEELSNTARN---LEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++       K     RF  
Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQ-------KENFKQRFN- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|229495719|ref|ZP_04389447.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317293|gb|EEN83198.1| helicase conserved domain protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 1828

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 81/253 (32%), Gaps = 48/253 (18%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               S  +     F TP  VV            A  +E+  + + + DP+ G G F   +
Sbjct: 93  SYMQSLKNSVMTAFYTPAPVVR--------EIAASLREAGIVPQRILDPSAGMGEF-IRS 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + +A  G         +  GQ L             +   +    R   + I+      
Sbjct: 144 FDGIAAEGHTTFGFEKDILTGQMLS-----------ALHPEDKIRIR-GFEEIES----- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                G  F    SN PFG     D        K  E  R    + ++S  +  F+    
Sbjct: 187 ---KLGGYFDVVSSNIPFGDVAVFDPVFS----KTDEPAR---KIARMSLHNYFFV---- 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A + S   +           +R WL+ +  + + V LP +LF     
Sbjct: 233 -KGVDMLREGGVLAFITSQGVMNAPTNEP----VREWLMSHTRLVSAVRLPNNLFSENAG 287

Query: 401 TNIATYLWILSNR 413
           T + + L +L  +
Sbjct: 288 TEVGSDLIVLQKQ 300


>gi|315608534|ref|ZP_07883519.1| DNA methylase [Prevotella buccae ATCC 33574]
 gi|315249782|gb|EFU29786.1| DNA methylase [Prevotella buccae ATCC 33574]
          Length = 1592

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 74/230 (32%), Gaps = 38/230 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   +R   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISGALASTNLQVRRCLDPSMGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + +R    +   +L                  ++    SN PFG     D  
Sbjct: 166 LHPYGKGNIFVRNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
                 IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSGLIVLQKQTGKE 305


>gi|168183122|ref|ZP_02617786.1| restriction endonuclease family protein [Clostridium botulinum Bf]
 gi|237794552|ref|YP_002862104.1| restriction endonuclease family protein [Clostridium botulinum Ba4
           str. 657]
 gi|182673735|gb|EDT85696.1| restriction endonuclease family protein [Clostridium botulinum Bf]
 gi|229261340|gb|ACQ52373.1| restriction endonuclease family protein [Clostridium botulinum Ba4
           str. 657]
          Length = 741

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 55/192 (28%), Gaps = 19/192 (9%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESY 103
           +        + + E               + +    F N  +  L ++   N +     Y
Sbjct: 58  ISKIFMEKNNIIGELAKKNIKYYALTLDTISLVNLVFDNADKKFLESIFKDNIK---YEY 114

Query: 104 IASFSDNAKAIFEDFDFSSTIARL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           I     +     +  DF      L      LL KI       +   ++     +  IYE 
Sbjct: 115 INPSYYS----LDKEDFLHYENDLFYRYNILLNKIIDEIDTFDFIQNSG---EIGEIYEK 167

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           +I    ++  +    F TP  ++      +       F         L D + G G F+ 
Sbjct: 168 II---STKYKKSMGIFYTPEHIIDYILENVFYE----FSPLENPFVKLIDLSVGAGYFII 220

Query: 222 DAMNHVADCGSH 233
            A + +    + 
Sbjct: 221 KAYDKLKKVFTE 232


>gi|189462451|ref|ZP_03011236.1| hypothetical protein BACCOP_03139 [Bacteroides coprocola DSM 17136]
 gi|189430612|gb|EDU99596.1| hypothetical protein BACCOP_03139 [Bacteroides coprocola DSM 17136]
          Length = 956

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 87/295 (29%), Gaps = 58/295 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+ +              +  +     R + +P+ G G F++     V       +
Sbjct: 104 AFYTPQAITDTIA--------DVLHDRKVRPRLVLEPSAGMGAFISP----VLSNNPQAE 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR-DLSKNIQQGSTLSKDLFTGKRFHY 294
           +        ++       +    ML         R +  + I+             RF  
Sbjct: 152 V----TAFEKD-------LLTGKMLGHLYPQQKIRTEGFEKIE--------KPFLNRFDL 192

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354
            +SN PFG     D    + E++   +      +      +  FL     K       GG
Sbjct: 193 AISNIPFG-----DIAVFDAEYEKKSV---MHRIAAKKVHTYFFL-----KGLDAVRDGG 239

Query: 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILS 411
             A + S S L       G    R  +++   + + + LP +LF     T +   L IL 
Sbjct: 240 VVAFITSQSVLNT----EGNGGTRYLMMKQADLLSAIRLPNNLFTENANTEVGCDLIILQ 295

Query: 412 N--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKF 464
               K +     ++            + G        D   +I+     ++   +
Sbjct: 296 KNINKMDLSEEDMRFTRTVR----SNHTGVVTNEYFLDHPERIIHTEAKKDTDPY 346


>gi|152983386|ref|YP_001354718.1| hypothetical protein mma_3028 [Janthinobacterium sp. Marseille]
 gi|151283463|gb|ABR91873.1| Hypothetical protein mma_3028 [Janthinobacterium sp. Marseille]
          Length = 403

 Score = 42.7 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 80/275 (29%), Gaps = 46/275 (16%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  +  +  A  F TP  +  +  + L                ++ D   G G      
Sbjct: 4   SKDSARGNPDAGQFATPDWIADILCSRLSSGLK-----------SVADLGVGKGALSLAL 52

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N V DC     +           +    A       I  +  D  R             
Sbjct: 53  RNRVLDCSI---VGIDKHLLPDGDQETMQAQG-----IHLITKDIGRPKFS--------- 95

Query: 284 KDLFTGKRFHY--CLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
            D F  +       +SNPPF         D+V  ++  G  G       K+    ++FL 
Sbjct: 96  -DWFLKQYGAVSTVISNPPFINVLNSPLIDSVLAKNSLGNRG------AKVQRLDLIFLA 148

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
           H    +       G  A +L  S      A +      + ++ N  +  I+ALP++ +  
Sbjct: 149 HAMKMITQQ----GEIAFILPRSAF----ATASSRTWLQSMIHNFGLAEIIALPSNAYHE 200

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
             + T + I         +  V L  A       R
Sbjct: 201 AEVETAILIFRPGMRRAGKINVTLFRAEGKSKIDR 235


>gi|257455842|ref|ZP_05621065.1| type I restriction enzyme M protein [Enhydrobacter aerosaccus SK60]
 gi|257446756|gb|EEV21776.1| type I restriction enzyme M protein [Enhydrobacter aerosaccus SK60]
          Length = 169

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 37/159 (23%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              +RRL+         V+EK        I    F +   +  +  S ++          
Sbjct: 35  LLFIRRLDEL-----QLVKEKKANRLKQPIVNPIFDESQAHLRW--SRFT---------- 77

Query: 98  NNLESYIASFSDNAKAIFEDF------DFSSTIARLEKAG-------LLYKICKNFSGIE 144
             L      ++  A  +F         D ++    ++ A        LL K+    + + 
Sbjct: 78  -TLGDASQLYNVVANEVFPFIKNLGAEDDTTYSHHMKDARFTIPTPALLTKVVDLVADVP 136

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDV 183
           +           +IYE+++ +     +     F TPR +
Sbjct: 137 MD----DKDTKGDIYEYMLGKIA--SAGQNGQFRTPRHI 169


>gi|330836160|ref|YP_004410801.1| helicase A859L [Spirochaeta coccoides DSM 17374]
 gi|329748063|gb|AEC01419.1| helicase A859L [Spirochaeta coccoides DSM 17374]
          Length = 1418

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 36/222 (16%)

Query: 101  ESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
            ++ +A+F +N K +   F   + I  L++   L    + F G+  +             E
Sbjct: 881  DTTLANFDENIKDVV--FKEVTGI-TLDQFRTLRDTYEFFDGVVFNESIQEFLHKK---E 934

Query: 161  HLIRRFGSEVSEG---------AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
             L   F     E               TPR VV L    L + +  +F +     +T  D
Sbjct: 935  QLADYFDDSHDEDIFDYIPPQKTNQIYTPRKVVKLMIDKLEEENPDIFTD---KDKTFAD 991

Query: 212  PTCGTGGFLTDAMNHVA--------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                +G +LT+ +  +         D     K       +G       + +    +    
Sbjct: 992  LYVKSGLYLTEIVKRLYTALAGQIPDEKQRIKHILENQIYGFAPSEIIYNIARNFIFGSF 1051

Query: 264  LESDPRRDLSKNI----QQGSTLSKDLFTGKRFHYCLSNPPF 301
               +      +++    + G +L        +F   + NPP+
Sbjct: 1052 ANINDSHLQCRDLTEMAKTGRSL------DMKFDVVVGNPPY 1087


>gi|153868679|ref|ZP_01998435.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074725|gb|EDN71553.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 1061

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 54/179 (30%), Gaps = 20/179 (11%)

Query: 144 ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP 203
           +     V + ++  +Y+ LI     E      ++ TP  +     A L     +      
Sbjct: 317 DYDFSNVQEDILKGVYQELID---LETRHALGEYYTPDWLCERIVANLPVTHQSKI---- 369

Query: 204 GMIRTLYDPTCGTGGFLTDA-MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                  DP CG+G FL  A      D              G ++ P +  +    +L+ 
Sbjct: 370 ------LDPACGSGSFLRAAVAQFKRDFPKLSAPQLTSQIIGIDIHPLSVQIAKTTLLLA 423

Query: 263 RLESDPRRDLSK--NIQQGSTLSKD----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
             +     +     ++   ++L          G  F   + +  +    +   +  E +
Sbjct: 424 LSDKIHHANKPVTLHVYLANSLLLPEGVAGLFGASFKMIIDDKVYSLNMDIFANPAEFD 482


>gi|1546793|gb|AAC57943.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus
           SC1A]
          Length = 372

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 64/251 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++ G +       F TP+ +  +           +F+  P   +++ +P+CG+G FL + 
Sbjct: 12  KQLGMKHRSKMGIFFTPKPLRDI-----------VFQHIPINPQSVLEPSCGSGEFLVEC 60

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                         P     G EL+    ++                     I     L+
Sbjct: 61  ETR----------FPTASITGVELDETLASISKEN------------TTRSTIYTQDFLT 98

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     +F   + NPPF +        ++  +K    GR           S L++  L 
Sbjct: 99  FD---EGKFDLIIGNPPFVQ--------MKTVNKQASSGR-----------SNLYIEILF 136

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFFRT 401
             +    N  G  A+V+  S + NG         R  +L   ++  E I       F  T
Sbjct: 137 KCMTQHLNDNGVLAMVIP-STIMNGHFSQ---PTRELILSKKILHFETI---REHTFKDT 189

Query: 402 NIATYLWILSN 412
                + ++ N
Sbjct: 190 KAGVSILVIQN 200


>gi|308176337|ref|YP_003915743.1| site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
 gi|307743800|emb|CBT74772.1| putative site-specific DNA-methyltransferase (adenine specific)
           [Arthrobacter arilaitensis Re117]
          Length = 549

 Score = 42.7 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 59/214 (27%), Gaps = 44/214 (20%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             + TP  V        L                + +P+CG   FL  A + + +     
Sbjct: 17  GAYFTPEPVASFMAQWALGQQ----------GSRVLEPSCGEAQFLAAAHSVLDEQREQL 66

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
                    G EL   +       M    +           I+Q +           F  
Sbjct: 67  D------MLGLELHEPSVQAARQRMRAAGIN--------ARIEQANFFEVSGHGD--FDA 110

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN----KLELPP 350
            + NPP+          V  +   G   +      K S   +  L  +            
Sbjct: 111 VIGNPPY----------VRYQLHRGADRQLSRAAAKASGVELNELASIWAAFVVHATSFL 160

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GGR A+VL +  +F   A      +R+ LLE 
Sbjct: 161 AVGGRLALVLPAELMFVNYA----GPVRQMLLER 190


>gi|153871961|ref|ZP_02000989.1| helicase [Beggiatoa sp. PS]
 gi|152071572|gb|EDN69010.1| helicase [Beggiatoa sp. PS]
          Length = 344

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 54/161 (33%), Gaps = 16/161 (9%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNF 140
           +N S++    +        LE+ + +F          F   S    L+     Y + +  
Sbjct: 195 FNESQFHRENV----IAKELEAVVNTF----------FTVKSPRDTLKSIDSYYAVIRR- 239

Query: 141 SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALF 199
               +       + +  IYE+  + +  + ++      TP ++V           +    
Sbjct: 240 EAANIANHHEKQQFLKVIYENFYKTYNPKAADRLGIVYTPNEIVRFMIESTDYLLNKHFN 299

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           +        + DP  GTG F+T+ + ++   GS   I    
Sbjct: 300 RLLADENVEILDPATGTGTFITELIEYLPKIGSVQSIWKKY 340


>gi|153873071|ref|ZP_02001775.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152070463|gb|EDN68225.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 719

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 64/223 (28%), Gaps = 58/223 (26%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFKESPGMI 206
            ++   +  ++++H++    S+         T  + ++ L   L LD   A F++   + 
Sbjct: 78  SSISPAIFGSLFQHIMGD--SKARRKLGAHYTSEKHILRLINPLFLDDLYAEFEKLQALK 135

Query: 207 R----------------TLYDPTCGTGGFLTDAMNHVAD-----CGSHHKIPPI------ 239
           R                  +DP CG G FL      +           HK          
Sbjct: 136 RDKRKKLAAFQNKLSALYFFDPACGCGNFLIVTYQALRRLELQVLREQHKKSQDTHLNFE 195

Query: 240 -------LVPHGQELEPETHAVCVAGMLI--RRLESDPRRD-----------LSKNIQQG 279
                     +G ELE     +    M +   ++  +  +             S  I  G
Sbjct: 196 IAPLISLDHFYGIELEEWPMRIAEVAMWLTQHQMNREFAQQFGREPDLLPLKTSAQITCG 255

Query: 280 STLSKD--------LFTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           + L  D         F      Y L NPPF  K  K       
Sbjct: 256 NALQLDWQQVVDVSKFKQVETLYLLGNPPFIGKNFKTASQNAD 298


>gi|315652660|ref|ZP_07905637.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485104|gb|EFU75509.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 2509

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 110/380 (28%), Gaps = 69/380 (18%)

Query: 47   ALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIAS 106
             L     +++E         ++ E+  ++       TS   +  +   N R   E  +  
Sbjct: 1434 ILSIAEKSLKESVDKEELPVLNKEALSEIPRQEETYTSGEYVKNISPVNYRITREDEVLP 1493

Query: 107  FSDNAKAIFEDFDFSSTIARLEKA--GLLYKICKNFSGIELHPDTVPDRVMSN------- 157
             S+  K   E       + +  +        I   + G     D   +            
Sbjct: 1494 PSERLKNNIEAIKVLKQLGKENRNASKEEQDILSKYVGWGGLSDVFDEERGGQWQEARMF 1553

Query: 158  IYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
            + E+L+   + +        F TP+ V+                +       + +P+ GT
Sbjct: 1554 LKENLLPSEYEAAKESTLTAFYTPKVVIDAIYH--------TLSDMGFESGNILEPSMGT 1605

Query: 217  GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            G F+ +    +               +G EL+  +  +              +   + NI
Sbjct: 1606 GRFIGNLPLSMQ----------NSKFYGIELDSISGQIAK------------KLYPNSNI 1643

Query: 277  QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            Q      K  F+   F   + N PFG+    D++  +      +                
Sbjct: 1644 QV-KGFEKTAFSNNLFDIAVGNVPFGEYRVSDREYEKNNFLIHDY--------------- 1687

Query: 337  LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
                    K       GG  A + SS  +          +IRR++ E       + LP +
Sbjct: 1688 -----FFAKTLDKVRNGGIIAFITSSGTMDKRN-----EDIRRYISERAEFLGAIRLPNN 1737

Query: 397  LF---FRTNIATYLWILSNR 413
            +F     T + + +  L  R
Sbjct: 1738 IFKDEAGTEVTSDIIFLKKR 1757


>gi|262045267|ref|ZP_06018292.1| modification methylase Eco57IB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037323|gb|EEW38569.1| modification methylase Eco57IB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 542

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 91/243 (37%), Gaps = 32/243 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    + TP+++    T  +L              +++ +P+CG G F     N+  D  
Sbjct: 11  KLRGGYYTPQNIADFTTKWVL----------NNKPKSILEPSCGDGVFFQSLYNNKFDKN 60

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +  +   +     ++      ++  +   +   E D        IQ+ +T          
Sbjct: 61  TKVQGYELFDIEAKKSMELCKSLGFSD--VEITEGDFLEWAKVAIQKKNT---------S 109

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPPF +    +KD   +E+             K ++  + F++   + L     
Sbjct: 110 FDAIIGNPPFIRYQFLEKDF--QENTEAIFKLLDLKFTKHTNAWVPFILSGVSLLNP--- 164

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
            GGR  +V+ S  +    A S    +R +L E+   + ++  P +++F   +   + +L 
Sbjct: 165 -GGRLGMVIPSEIINVMHAQS----LRTFLGEHCS-KIVIIDPKEIWFSETLQGAVILLV 218

Query: 412 NRK 414
            +K
Sbjct: 219 EKK 221


>gi|255015553|ref|ZP_05287679.1| hypothetical protein B2_16718 [Bacteroides sp. 2_1_7]
          Length = 1133

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 77/290 (26%), Gaps = 76/290 (26%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
             + + K IL       L   + P  S    +     G      + +    Y F N    
Sbjct: 256 DESKYYKAILQNLFFAMLNSPITPEGSKELSERHFRKGRGDYDNNKLMRYEYYFKN--PQ 313

Query: 87  SLSTLGSTNT------------RNNLESYIASFS--DNAK-------------AIFEDFD 119
               L +                 + + Y   FS  +  K              + ++ D
Sbjct: 314 LFVDLANKTVPFLNGGLFDCLDEKDKDLYYDGFSDREAVKKALIVPDYLFFGEEVGKNID 373

Query: 120 FSSTIARLEKAGL----LYKICK--NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSE 169
            S      +K  +    +  I K  NF+  E  P          ++  ++E+L+  +  E
Sbjct: 374 LSEWYGDKKKKKVSARGIIDILKRYNFTVEENTPFDKEVSLDPELLGKVFENLLASYNPE 433

Query: 170 ----VSEGAEDFMTPRDVVHLATA-----------------------------LLLDPDD 196
                 +    F TPR++V                                  +    + 
Sbjct: 434 TQTTARKQTGSFYTPREIVQYMVDESLVAHLKRTVGDDLETQYRQLMQYTDEVVNFTEEQ 493

Query: 197 ALFKESPGMIRTLYDPTCGTG----GFLTDAMNHVADCGSHHKIPPILVP 242
                       + DP CG+G    G L   ++ ++     +     ++ 
Sbjct: 494 RKQIMQSLYNCKVLDPACGSGAFPMGMLQQMVHILSRIDPDNTQWKEMML 543


>gi|330507238|ref|YP_004383666.1| hypothetical protein MCON_1119 [Methanosaeta concilii GP-6]
 gi|328928046|gb|AEB67848.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 1345

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 37/148 (25%)

Query: 172 EGAEDFMTPRDVVHLATALLLDP-----------DDALFKESPGMIRTL--YDPTCGTGG 218
           +    F TP+ +V       L+P           D  L  +    + ++   DP  G+G 
Sbjct: 500 KATGSFYTPQYIVKYIVKNTLEPLIKPMMEEASMDADLRTDLLRKLLSIKVLDPAMGSGH 559

Query: 219 FLTDAMNHVADCGSHHKIPPILV-----------------------PHGQELEPETHAVC 255
           FL +A +++A    H +                              +G +L P    + 
Sbjct: 560 FLVEATDYIAREIIHAREIARQEDEDSDAVAENDIHWARREVVRNCIYGVDLNPMAVELA 619

Query: 256 VAGMLIRRLESD-PRRDLSKNIQQGSTL 282
              + ++ + S+ P   L  +++ G++L
Sbjct: 620 KLSLWLKTVASNKPLSFLDHHLRCGNSL 647


>gi|168210989|ref|ZP_02636614.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710996|gb|EDT23178.1| superfamily II DNA and RNA helicase [Clostridium perfringens B str.
           ATCC 3626]
          Length = 1553

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 97/337 (28%), Gaps = 72/337 (21%)

Query: 93  STNTRNNLESYIASFSDNAKAIFED-FDFSSTIARLEKAGLLY-----KICKNFSGIELH 146
             N   N +      +   K  F++      T+ ++E    L      +I   +SG    
Sbjct: 380 PKNKLINFKDNSNDENIGLKTKFKNNIAAIETLKKIENENRLATSEEQEILSKYSGWGGM 439

Query: 147 PDTVPDRVMSNIYEH-----LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                 R      E+     L+    + S  +       TP+ V+               
Sbjct: 440 AQAFDRRANGWSKEYTELRSLLTQEEYESARASTLNAHYTPKVVIDSIYR--------AL 491

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           +        + +P+ G G F +   +++               +G EL+  +  +     
Sbjct: 492 RLFGFREGNILEPSMGVGHFFSRLPDNM----------NNSKLYGVELDDISGRISK--- 538

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                     ++ S  I+      +  F+   F   + N PFG     DKD  +      
Sbjct: 539 -------QLYQNASIEIKG---YEETTFSNNFFDVAIGNIPFGDYKVFDKDFNKNNFLIH 588

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
           +                 F     +KL+      G  A V S   +         S +R 
Sbjct: 589 DY----------------FFAKTLDKLKE----NGIVAFVTSKGTM-----DKANSSVRE 623

Query: 380 WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           +L E       + LP + F     T + T +  L  +
Sbjct: 624 YLSERADFIGAIRLPKNTFKSSANTEVTTDIIFLQKK 660


>gi|258514693|ref|YP_003190915.1| hypothetical protein Dtox_1417 [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778398|gb|ACV62292.1| conserved hypothetical protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 1557

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 23/144 (15%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      + +  + TP  +        L            +  T+ +P  G+  FL 
Sbjct: 508 FIYRMAGRDRQRSASYYTPEVLTRCLVKYALKELLEGKTADEILTLTVCEPAMGSAAFLN 567

Query: 222 DAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVCVAGM 259
           +A+N +A+     +                             +G +L P    +    +
Sbjct: 568 EAVNQLAEAYLERREEETGEVVQHQERARELQKVKMFIADRNVYGVDLNPVAVELAEVSL 627

Query: 260 LIRRL-ESDPRRDLSKNIQQGSTL 282
            +  + +          ++ G++L
Sbjct: 628 WLNTIYKGAYVPWFGNQLRCGNSL 651


>gi|282880842|ref|ZP_06289536.1| hypothetical protein HMPREF9019_2132 [Prevotella timonensis CRIS
           5C-B1]
 gi|281305283|gb|EFA97349.1| hypothetical protein HMPREF9019_2132 [Prevotella timonensis CRIS
           5C-B1]
          Length = 626

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 53/159 (33%), Gaps = 24/159 (15%)

Query: 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS--------- 232
           D+    + L  D  +    ++      L DPTCGTG F+  A+N + +            
Sbjct: 162 DLSKFISTL--DNKEITLMKNHVATIKLIDPTCGTGSFVIKAINILCNIYKLLGMPLGAS 219

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGML---IRRLESDPRRDLSKNIQQGSTLSKDL--- 286
             +        G +++ ET  +    +    +        +   KN + G+T+  D    
Sbjct: 220 GIQHIIKNNVFGVDIDEETLEILRYRLFSTALYEFSVKLTKKDLKNFKLGNTICDDTFLW 279

Query: 287 -------FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
                  F    F   + NPP+ +      +    E+  
Sbjct: 280 EKEFRMVFKNGGFDCVVGNPPYKEYTVAKLNYSLPEYFK 318


>gi|172037384|ref|YP_001803885.1| putative adenine specific DNA methyltransferase [Cyanothece sp.
           ATCC 51142]
 gi|171698838|gb|ACB51819.1| putative adenine specific DNA methyltransferase [Cyanothece sp.
           ATCC 51142]
          Length = 400

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 16/171 (9%)

Query: 56  REKYLAFGGSNIDLESFVKVA--GYSFY-NTSEYSLSTLGSTNTRNNLE-----SYIASF 107
            E+ L         + F +       FY   S + L    + N  +N +      Y+   
Sbjct: 219 LEEALGITFEGDKGDRFFRSTLIQTLFYGIFSAWVLWHKENPNREDNFDWRTAVYYLHV- 277

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLL---YKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
               +AIFE     S +  L+   +L             +          +   YE  ++
Sbjct: 278 -PMIQAIFERIAAPSKLKALDLVEVLNWTGSALNRVRREDFFTQFDEGEAVQYFYEPFLQ 336

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDP 212
            F  ++ +    + TP+++V    + +            G+      + DP
Sbjct: 337 AFDPQLRKELGVWYTPKEIVQYMVSRVDTVLKEELHIEDGLADDNVYILDP 387


>gi|317055892|ref|YP_004104359.1| adenine specific DNA methyltransferase [Ruminococcus albus 7]
 gi|315448161|gb|ADU21725.1| adenine specific DNA methyltransferase [Ruminococcus albus 7]
          Length = 1093

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 73/294 (24%), Gaps = 89/294 (30%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL--------------------------- 191
           YE  +  +          + TP+ VV+     +                           
Sbjct: 346 YEEFLTAYDKAQKVQRGVYYTPQPVVNFIVRAVDSILKTEFGLADGLASEETKTVKYMRE 405

Query: 192 -LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----------------ADCGSH 233
            +                + DP  GTG FL   +  +                      +
Sbjct: 406 KIRGQGMTEDTKEVPAVQILDPATGTGTFLRQTILQIYDNFRAKHKGESEEQIRKAWNEY 465

Query: 234 HKIPPILVPHGQELEPETHAVCVAG--MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                +   +G EL    +AV      M+++    D   D   N+   ++L +      +
Sbjct: 466 VPKHLLPRLNGFELMMAPYAVAHMKLAMVLKDTGYDFGGDHRLNVFLTNSLEEAGKDDFQ 525

Query: 292 F------------------------HYCLSNPPFGKKWEKDKDAVEK---EHKNGELGRF 324
                                    +  + NPP+  +       +     ++K    GR 
Sbjct: 526 MTLFDNDPLAFESIEANQAKKNNGINVIIGNPPYSGESANKGKWIMDLMEDYKKEPGGRI 585

Query: 325 GPGLPKISDGSMLFLMHLANK------LELPPNGGGRAAIVLSSS----PLFNG 368
                   + +  ++     K      L +  +G G  A +        P F G
Sbjct: 586 KLQ-----EQNYKWINDDYVKFLRYAQLFIEKSGYGIMAYICPHGYIDNPTFRG 634


>gi|256838486|ref|ZP_05543996.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739405|gb|EEU52729.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1944

 Score = 42.7 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 80/268 (29%), Gaps = 61/268 (22%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++      D    +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILGHLHPDQKIRVQGFEKIEKPF--TDYFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351
           +SN PFG     D    + E            + + S      +  FL     K      
Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSHD------MARRSAAKTIHNYFFL-----KSLDAVR 237

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408
            GG  A + S   L         + IR +++ N  +  +  LP +LF     T + + L 
Sbjct: 238 EGGIVAFITSQGVL----DAPSNAPIREYMMRNANLVGVARLPNNLFTDNAGTEVGSDLI 293

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRN 436
           IL     ++R     L +  +L+     
Sbjct: 294 ILQKNSGKKRV----LYDYEELFVQTEK 317


>gi|299483503|gb|ADJ19584.1| helicase domain-containing protein [Treponema primitia ZAS-2]
          Length = 1659

 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 2/152 (1%)

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           S + + I    +  +T    E+    Y   +  +   L       RV+S++Y+   R   
Sbjct: 816 SQSMQGIINVLNEKTTKEDSEQLDRFYVSVRKRAE-GLDNGEAKQRVISDLYDKFFRTAF 874

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNH 226
             V+E      TP ++V      + D     F  S       + DP  GTG F+T  +  
Sbjct: 875 PLVTEKLGIVYTPVEIVDFIIHSVEDVLQKEFSRSLSDENVHILDPFTGTGTFITRLLQS 934

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                   +       H  E+    + +    
Sbjct: 935 GIIRPEDLERKYNKEIHANEIMLLAYYIASIN 966


>gi|269793672|ref|YP_003313127.1| hypothetical protein Sked_03250 [Sanguibacter keddieii DSM 10542]
 gi|269095857|gb|ACZ20293.1| hypothetical protein Sked_03250 [Sanguibacter keddieii DSM 10542]
          Length = 1347

 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 33/147 (22%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDD--------------ALFKESPGMIRTLYDPTCG 215
               +    TP+ +        L+P                 L   +  +   + D  CG
Sbjct: 569 SRANSGAHYTPKSLAQEVVRYALEPLVYRPGPHQTEDTDQWRLLDSNEILDLKVADIACG 628

Query: 216 TGGFLTDAMNHV-----------------ADCGSHHKIPPILV-PHGQELEPETHAVCVA 257
           +G FL  A  ++                  +     K   +    +G ++      +C  
Sbjct: 629 SGAFLVAAAEYLAARVLQAWQSEGVRGTPHELEVKAKRQVVAQCLYGADINGMAVEMCKL 688

Query: 258 GMLIRRLESD-PRRDLSKNIQQGSTLS 283
            + +  L+ D P   +   +  G++L 
Sbjct: 689 SLWLVSLDPDQPFSFVDDKVLHGNSLL 715


>gi|154687069|ref|YP_001422230.1| YtxK [Bacillus amyloliquefaciens FZB42]
 gi|154352920|gb|ABS74999.1| YtxK [Bacillus amyloliquefaciens FZB42]
          Length = 328

 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 39/245 (15%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               TL DP CGTG  L  A N ++D  +           G E++     +  A   ++ 
Sbjct: 116 RKGLTLLDPACGTGNLLLTAANQLSDKAAKS--------FGIEIDDVLLKIAYAQANLQE 167

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            E +             +L       +     + + P G  +  D+ A   E K  E   
Sbjct: 168 KEMELFCQ--------DSLQP--LFIEPADAVICDLPVGY-YPNDEGAEAFELKADEGHS 216

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLE 383
           F            LF+       +     GG    ++ +  LF+        +++R+  E
Sbjct: 217 FAHH---------LFIEQSVKHTKP----GGYLFFMIPNH-LFDSAQS---DKLKRFFAE 259

Query: 384 NDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINATDL--WTSIRNEGKK 440
              I A++ LP  +F     A  + IL  + +  +   +  L N        ++R    K
Sbjct: 260 KVYINALLQLPATMFKDEAQAKSILILQKKGEDAKPPKQALLANLPSFANQQAMREMTAK 319

Query: 441 RRIIN 445
                
Sbjct: 320 LDQWI 324


>gi|296394144|ref|YP_003659028.1| type III restriction protein res subunit [Segniliparus rotundus DSM
            44985]
 gi|296181291|gb|ADG98197.1| type III restriction protein res subunit [Segniliparus rotundus DSM
            44985]
          Length = 1636

 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 70/245 (28%), Gaps = 40/245 (16%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDP 212
            V++ +YE   +   ++ ++      TP  VV            +   K   G    + DP
Sbjct: 860  VIAELYERFFKIGFAKQADALGIVYTPVQVVDWILRAADAVSREHFGKGLTGEDVHVLDP 919

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM-----LIRRLESD 267
              GTG F+T  M                  H  E+    + V    +      +    S 
Sbjct: 920  FTGTGTFITRLMQTGLVTPHDLARKYTSELHANEIMLLAYYVAAVNIESTYHALAGKTSG 979

Query: 268  PRRDLSKNIQQGSTL----SKDLFTGKRF---------------HYCLSNPPF--GKKWE 306
               +    I    T     S D      F               +  + NPP+  G+   
Sbjct: 980  DEYEPFPGIVLTDTFQISESDDTMDADMFPQNNDRITRQLATKINVVVGNPPYSVGQDSA 1039

Query: 307  KDKDA------VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG--GRAAI 358
             D +A      ++K  +N    R         + + L+  ++          G  G  A 
Sbjct: 1040 NDNNANVKYPTLDKHIENTYAKRSTAT-----NKNSLYDSYIRAFRWATNRIGDKGIVAF 1094

Query: 359  VLSSS 363
            V +  
Sbjct: 1095 VSNGG 1099


>gi|315576693|gb|EFU88884.1| N-6 DNA Methylase [Enterococcus faecalis TX0630]
          Length = 335

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|291166232|gb|EFE28278.1| helicase [Filifactor alocis ATCC 35896]
          Length = 3918

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 73/533 (13%), Positives = 155/533 (29%), Gaps = 116/533 (21%)

Query: 81   YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA------RLEKAGLLY 134
            Y   +  + ++   N +   E  I   S+  K   E       I         E+  +L 
Sbjct: 2052 YAPDDEYMGSIPPINYKTTGEDEILPPSERLKNNIEAIKVLKEIEERHSHATKEEQDILS 2111

Query: 135  KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED-----FMTPRDVVHLATA 189
            K    + G+    D       S   + L         + A +     F TP+ V+     
Sbjct: 2112 KYVG-WGGLSDVFDEEKQGQWSKARDFLKENLSQSEYDAARESTLTAFYTPKVVIDSIYK 2170

Query: 190  LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
                               + +P+ GTG FL +    +               +G EL+ 
Sbjct: 2171 --------ALSNMGFESGNILEPSMGTGRFLGNLPESMQSSK----------FYGVELDS 2212

Query: 250  ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             +  +              +   + NI Q     +  F+   F   + N PFG     + 
Sbjct: 2213 ISGRIA------------SKLYPNANI-QIKGFEETTFSNNLFDIAIGNVPFG-----EY 2254

Query: 310  DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
               ++E++                 + L   +   K       GG  A +       NG 
Sbjct: 2255 KISDREYERN---------------NFLIHDYFFAKTLDKVRSGGVVAFIT-----SNGT 2294

Query: 370  AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQ--- 423
                  ++RR++ E       + LP + F     T + + +  L  R    +  +     
Sbjct: 2295 MDKKSEDVRRYISERAEFLGAIRLPNNTFKGEAGTEVTSDILFLKKRDRLLKLDEDWIKL 2354

Query: 424  ------------LIN------------ATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR 459
                         ++            ++   T++     +   + +     I +I  S 
Sbjct: 2355 DTDEKGLSYNKYFVDNPDMVLGNMEEVSSRFGTALACIADENITLKEQLEAAIKNIKGSY 2414

Query: 460  ENGK------------------FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEAD 501
            E  +                  +S  +      +R   +++ L ++ + ++   A LE +
Sbjct: 2415 EKVELNNEFETETILADDSVKNYSYAVIDDKVYFRENSIMQKLDLNKVDEEKVKAYLEIE 2474

Query: 502  ITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             T R++    +  + D      Q+     + +   K  I +++A     +   
Sbjct: 2475 KTLRQVIAYQKEDYSDTEIKEKQEDLNRLYDDFSKKYGILNSKANKKLFREDA 2527


>gi|288958832|ref|YP_003449173.1| hypothetical protein AZL_019910 [Azospirillum sp. B510]
 gi|288911140|dbj|BAI72629.1| hypothetical protein AZL_019910 [Azospirillum sp. B510]
          Length = 1013

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 19/119 (15%)

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                V   V+  +YE LI R   +   G  ++ TP     LA  ++    D   ++   
Sbjct: 284 FRLSEVESDVLKILYESLIDR---DERHGLGEYYTPD---WLAAKVVRHAVDRPLEQ--- 334

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------PHGQELEPETHAVCV 256
               + DP CG+G FL  A+ H         + P            G ++ P    +  
Sbjct: 335 ---RVMDPACGSGTFLFHAIRHFLAEAEEAGLEPDRRALEACGYVAGTDIHPVAVIIAR 390


>gi|325299275|ref|YP_004259192.1| hypothetical protein Bacsa_2164 [Bacteroides salanitronis DSM
           18170]
 gi|324318828|gb|ADY36719.1| hypothetical protein Bacsa_2164 [Bacteroides salanitronis DSM
           18170]
          Length = 1021

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 65/235 (27%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-------- 154
           Y+         +FE  D          A    ++ + FS      D              
Sbjct: 309 YLNG------GLFER-DEEDEPESRFPADYFKRLFQFFSEYNFTIDENDPNDAEVGVDPE 361

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT--------------------ALLLD 193
            +  I+E+L+     E ++    F TP+++V                          +L 
Sbjct: 362 MLGKIFENLL-----EDNKDKGAFYTPKEIVRYMCQESLIAYLETNTSVAKDKIRQFVLS 416

Query: 194 PDDALFKESPGMI---------RTLYDPTCGTGGFLTDAMNHVA--------DCGSHHKI 236
           P++ +   S               + DP  G+G F    +N +         +     +I
Sbjct: 417 PEEGVADISENKKPKLLAALEEVKICDPAIGSGAFPMGLLNELLHCREVLSGEHYDRAEI 476

Query: 237 PPI---LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSK 284
                    +G ++E     +      +  +  +       N    I QG++L +
Sbjct: 477 KKNIIQNNIYGVDIEKGAVDIARLRFWLSIVVDEETPSPLPNLDYKIMQGNSLIE 531


>gi|148379249|ref|YP_001253790.1| restriction endonuclease family protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932045|ref|YP_001383621.1| restriction endonuclease family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153937273|ref|YP_001387170.1| restriction endonuclease family protein [Clostridium botulinum A
           str. Hall]
 gi|148288733|emb|CAL82816.1| putative DNA methyltransferase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928089|gb|ABS33589.1| restriction endonuclease family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|152933187|gb|ABS38686.1| restriction endonuclease family protein [Clostridium botulinum A
           str. Hall]
          Length = 741

 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 20/172 (11%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135
             F N  +  L ++   N +     YI     +     +  DF      +       L K
Sbjct: 92  LVFDNVDKRFLESIFKDNIK---YEYINPSYYS----LDKEDFLHYEDNIFYRYNIFLNK 144

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +G +    +     +  IYE +I     E  +    F TP  ++      +    
Sbjct: 145 IIDEINGFDFIHSSC---EIGEIYEKII---AKEYKKSMGIFYTPEYIIDYILENVFYE- 197

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
              F         L D + G G F+  A + +    +   I  +   + Q +
Sbjct: 198 ---FSPLENPFVKLIDISAGAGYFIIKAYDKLKKVFTE-NIQNLQEKYKQNI 245


>gi|148654630|ref|YP_001274835.1| hypothetical protein RoseRS_0460 [Roseiflexus sp. RS-1]
 gi|148566740|gb|ABQ88885.1| hypothetical protein RoseRS_0460 [Roseiflexus sp. RS-1]
          Length = 1373

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 27/138 (19%)

Query: 172 EGAEDFMT-PRDVVHLAT---------ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
           +    + T P  V  L            L     DA  +E+  +   + DP CG+G FL 
Sbjct: 484 KTTGSYYTRPELVQELIASALEPVLAQRLASAGRDAAAREAALLSIRVCDPACGSGHFLL 543

Query: 222 DAMNHVADCGSHHKIPP----------------ILVPHGQELEPETHAVCVAGMLIRRLE 265
            A   +    +  +                        G +L P    +C   + I    
Sbjct: 544 AAARRLGRELARIRAGDDEPSPAQFRHAVRDVIRRCIFGVDLNPLAVDLCKLALWIEGHA 603

Query: 266 SD-PRRDLSKNIQQGSTL 282
           +  P   L  +I+ G+ L
Sbjct: 604 AGLPLSFLDHHIRCGNAL 621


>gi|157961100|ref|YP_001501134.1| hypothetical protein Spea_1272 [Shewanella pealeana ATCC 700345]
 gi|157846100|gb|ABV86599.1| conserved hypothetical protein [Shewanella pealeana ATCC 700345]
          Length = 1353

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 29/140 (20%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTD----- 222
             +    TPR +     +  L P      E+P   +     + DP  G+G FL +     
Sbjct: 569 RRSGSHYTPRSLTAPIVSKTLQPLLRCLGETPSAEQILELKICDPAMGSGAFLVECCRQL 628

Query: 223 AMNHVADCGSHHKIP-------------------PILVPHGQELEPETHAVCVAGMLIRR 263
           A   VA  G   +I                         +G +       +    + +  
Sbjct: 629 ADEVVAAWGRTQEIENIAVNCPEGDVVAHARRLVAQCCLYGVDKNIMAVQLAKLSLWLFT 688

Query: 264 LESD-PRRDLSKNIQQGSTL 282
           L  + P   L  N++ G +L
Sbjct: 689 LARELPFTFLDHNLRYGDSL 708


>gi|88603151|ref|YP_503329.1| type IIS restriction enzyme [Methanospirillum hungatei JF-1]
 gi|88188613|gb|ABD41610.1| type IIS restriction enzyme [Methanospirillum hungatei JF-1]
          Length = 612

 Score = 42.3 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 71/258 (27%), Gaps = 54/258 (20%)

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYI-----ASFSDNAKAIFEDFDFSS 122
           D +   K    +F +     +  L S      L  Y+              +FE     S
Sbjct: 114 DPDILTKALDLTFLDIDREHVLDLKSDGRHEELFRYLFLRLCNYLHTTMPFLFEPIQDYS 173

Query: 123 TI---ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF-- 177
            +    RL        + ++ + I    D     ++  IY+  I      + +  + +  
Sbjct: 174 ELLFPDRLLHTD---SMLRDLNTIIPEDDWRETEIIGWIYQDYIAEKKDVLIKAKKQYTA 230

Query: 178 ---------MTPRDVVHLATALLL------------------------DPDDALFKESPG 204
                     TP+ +V       L                        + +    K S  
Sbjct: 231 DQIPAVTQLFTPKWIVQYMVENSLGRLWMLNRPHSRLYERMEYYIRPDEQETDFLKISSP 290

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCV 256
               + DP CG+G  L  A + + +             +       +G E++    ++  
Sbjct: 291 EELKVCDPACGSGHILVYAFDLLYEIYKEEGYLEQEIPEFILTHNLYGIEIDKRAGSLAA 350

Query: 257 AGMLIRRLESDPRRDLSK 274
             ++++    D +     
Sbjct: 351 FALVMKARRMDKKFFDHP 368


>gi|332674294|gb|AEE71111.1| DNA methylase [Helicobacter pylori 83]
          Length = 2805

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 91/305 (29%), Gaps = 58/305 (19%)

Query: 135  KICKNFSGIELHPDTVPDRVMSNIYEHL-----IRRFGSEVSEGAEDFMTPRDVVHLATA 189
            +I   FSG                ++ L        F    S   + + TP     L   
Sbjct: 925  EILSQFSGWGGLESYFKKDQRPEEFKELNALLTKDEFRRAYSSTRDAYYTP----KLVID 980

Query: 190  LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
             +    D L   +    + +++P+ GTG F+           +H          G EL+P
Sbjct: 981  SIYHGLDQLGFNNDNHQKEIFEPSLGTGKFI-----------AHAPSDKNYRFMGTELDP 1029

Query: 250  ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             +  +                 L  N    +T  ++    + +   + NPP+G       
Sbjct: 1030 ISANISK--------------FLYPNQVIQNTALENHQFYQEYDAFVGNPPYGNHKIYSS 1075

Query: 310  DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
            +  E  +++                   FL     +L+      G  A V+SS  +    
Sbjct: 1076 NDKELSNESVHNY---------------FLGKAIKELKDD----GIGAFVVSSWFM---- 1112

Query: 370  AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
              S   ++R  + +N      + LP  +F  T       I+  +K  +         A  
Sbjct: 1113 -DSKNPKMREHIAQNATFLGAIRLPNSVFKATGAEVSSDIVFFKKGVDEATNQSFTKAMP 1171

Query: 430  LWTSI 434
             +  I
Sbjct: 1172 YYDKI 1176


>gi|154795688|gb|ABS86814.1| putative helicase/DNA methyltransferase [Helicobacter cetorum]
          Length = 4043

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 103/333 (30%), Gaps = 72/333 (21%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            + F   +    + + TP     L    +    + L   +    + +++P+CGTG FL  A
Sbjct: 2049 QEFEKALLSTRDAYYTP----KLVIDSIYAGLEQLGFNNDDNKKEIFEPSCGTGKFLAYA 2104

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                                G EL+P +  +               + L  N +  +   
Sbjct: 2105 P-----------SDKNYHFVGTELDPISAGIS--------------QFLYPNQRIENKAL 2139

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            ++    + +   + NPP+G+      + +E    +                   FL    
Sbjct: 2140 QNYDFYQDYDAFIGNPPYGQHKIYSSNDMELSGASIHNY---------------FLGKAI 2184

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNI 403
             +L+      G  A V+SS  L      +  S++R  + +       + LP  +F  T  
Sbjct: 2185 KELKED----GIGAFVVSSWFL-----DAKNSKMREHIAKQATFLGAIRLPNSVFKGTGA 2235

Query: 404  ATYLWILSNRKTEERRGKVQLINATDLWTSIRN-------------EGKKRRIINDDQRR 450
                 I+  +K           ++   +  +               +  K   + D  + 
Sbjct: 2236 EVTSDIVFFKKGVNSEINQDFTHSKLYYEDLIKALNNYHAKAIEILQENKLDNLVDRAKL 2295

Query: 451  QILDIYVSREN----GKFSRML--DYRTFGYRR 477
             I++I  +  N     + S     D  TFGY  
Sbjct: 2296 NIINILANYFNLKPQNEQSDFYNIDTSTFGYSE 2328


>gi|325066260|ref|ZP_08124933.1| putative helicase [Actinomyces oris K20]
          Length = 1703

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 63/264 (23%), Gaps = 48/264 (18%)

Query: 154  VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDP 212
            V++ +YE       S+ ++      TP  +V      +                  + DP
Sbjct: 876  VITELYEKFFSLAFSKTAKSLGIVYTPVQIVDFILRSVDWLARTHLGRGITDEGVHVLDP 935

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM------------- 259
              GTG F+   +       +          H  E+    + +  A +             
Sbjct: 936  FTGTGTFIVRLLQSGLISKADLARKYAGELHANEILLLAYYIAAANIEVTYRDLMRSDTP 995

Query: 260  LIRRLESDPRRDLS---KNIQQGSTL----------------SKD----LFTGKRFHYCL 296
            L    ESDP +        I    T                 + D        K     +
Sbjct: 996  LADGEESDPAQAGYTPFDGIVLADTFQMTEDGDTLDQSVFVANNDRATAQLELKSIQVII 1055

Query: 297  SNPPFGKKWEKDKDAVEKEH--------KNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
             NPP+    E   D    +H        +     R   G  K S       +        
Sbjct: 1056 GNPPYSVGQESANDNNANQHYPSLDAKIETTYAAR-STGTNKNSLYDS--YLRAIRWASD 1112

Query: 349  PPNGGGRAAIVLSSSPLFNGRAGS 372
                 G    V +   +    A  
Sbjct: 1113 RVGEAGVIGFVTNGGFIDGNTADG 1136


>gi|218264045|ref|ZP_03477962.1| hypothetical protein PRABACTJOHN_03652 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222335|gb|EEC94985.1| hypothetical protein PRABACTJOHN_03652 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1080

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 72/241 (29%), Gaps = 47/241 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP          +     A F+E+   +R+  +P+ G GGFL  AM           
Sbjct: 154 AFYTP----KFLIDTVARQIHATFRENDLQMRSFLEPSAGIGGFLPVAMPETRSYAFEKD 209

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L+     L  +T A+          E               T++        F   
Sbjct: 210 SITGLIL--ALLNDDTTALTT------GFE---------------TIADQQLEHTAFDVI 246

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D +  +K     +  +           +  F+  +          GG 
Sbjct: 247 ASNIPFGNFRVFDAELWKKGGLYEQATKTIH--------NYFFVKAM-----ELLTEGGL 293

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSN 412
            A V S               +R +L+ +  +   + LP  LF  T+   + + L I   
Sbjct: 294 LAFVTSRGIADTPSN----KFVREYLVNHADLITALRLPDTLFMPTSGIEVGSDLLIFQK 349

Query: 413 R 413
            
Sbjct: 350 H 350


>gi|327313863|ref|YP_004329300.1| hypothetical protein HMPREF9137_1622 [Prevotella denticola F0289]
 gi|326944313|gb|AEA20198.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 1491

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 111/359 (30%), Gaps = 56/359 (15%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDAIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVDSDLIVLQKQSGKEIGEG 309

Query: 422 V--QLINATDLWTSI-RNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476
           +  Q +    +      +       + + + + I    I   R+ G          + + 
Sbjct: 310 IEQQFVQTASVPKGDGFSIAFNHNSLFEGEWKDISHRTIATDRQMGTDPYGKPAWEYTFD 369

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
                    +   L      R +  + +    P+ +  W   +  M Q++      E  
Sbjct: 370 GGIEDMADSLRTQLSLEVEQRFDRKL-YETGIPMTREEWQVQVDKMEQKVQGGLKTEQT 427


>gi|261879728|ref|ZP_06006155.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270333601|gb|EFA44387.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 1497

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGVGAFTETFAKQAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|319951187|ref|ZP_08025028.1| DNA methylase [Dietzia cinnamea P4]
 gi|319435137|gb|EFV90416.1| DNA methylase [Dietzia cinnamea P4]
          Length = 1050

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 88/331 (26%), Gaps = 91/331 (27%)

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR------- 207
           + ++Y+ L         +      TP  V        L P           +        
Sbjct: 192 LGDMYQDL----SEYAKKKYALLQTPEFVEEFILDRTLTPALKECSPRLPSVDAEGRTGE 247

Query: 208 ---TLYDPTCGTGGFLTDAMNHVA---------DCGSHHKIPPILVPHGQELEPETHAVC 255
               + DPTCG+G FL  A + +          +  +      +   HG ++ P   A+ 
Sbjct: 248 VDFKIIDPTCGSGHFLLGAFHRMLDYWRTEAPGEEATEQVRLALSSIHGVDINPFAVAIA 307

Query: 256 VAGMLI------RRLESDPRRDLSKNIQQGSTL--SKD---------------------- 285
              +++               +L   +  G +L  S+D                      
Sbjct: 308 QFRLMVAALRATGGSSLLNVPELPLQVYAGDSLLWSEDSAGQSGFDYGDLTVDPDALASG 367

Query: 286 -------------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
                              +   + NPP+    +K  +   +E      G +   +P   
Sbjct: 368 AHLTTEDVAALRRTLARDHYDVVVGNPPYITVKDKTLNQRYRELYGYCKGTYALTVP--- 424

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRW---LLEN----- 384
                F+       +       RA  +        G+  S     R +   L+E      
Sbjct: 425 -----FMEQFHALAKSGTLDPSRAGWI--------GQITSNSFMAREFGVPLIEEFFPRV 471

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           DL+E ++             T   +  NR+ 
Sbjct: 472 DLLE-VIDTSGAYIPGHGTPTVTLVSRNRRP 501


>gi|52081439|ref|YP_080230.1| putative RNA methylase YtxK [Bacillus licheniformis ATCC 14580]
 gi|52786814|ref|YP_092643.1| YtxK [Bacillus licheniformis ATCC 14580]
 gi|319647347|ref|ZP_08001569.1| YtxK protein [Bacillus sp. BT1B_CT2]
 gi|52004650|gb|AAU24592.1| putative RNA methylase YtxK [Bacillus licheniformis ATCC 14580]
 gi|52349316|gb|AAU41950.1| YtxK [Bacillus licheniformis ATCC 14580]
 gi|317390694|gb|EFV71499.1| YtxK protein [Bacillus sp. BT1B_CT2]
          Length = 328

 Score = 42.3 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 80/265 (30%), Gaps = 40/265 (15%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           IR+   +++        P     +    +                  TL+DP  GTG  L
Sbjct: 73  IRK-AFQLAILKGQKDIPHPNRQMTPDTIGLFIGYLVNKFMERKKGLTLFDPAVGTGNLL 131

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
              +N +A+              G E++     +      ++  E +     S       
Sbjct: 132 LAVLNQLAEEAGKA--------FGSEIDDVLIKLAYVQANLQEKEIELFNQDSLQPIFM- 182

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
                    +     + + P G  +  D+ A   E K  E   F            LF+ 
Sbjct: 183 ---------EHADAVICDLPVGY-YPDDESARAFELKADEGHSFSHH---------LFIE 223

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
                 +     GG    ++ +  LF         ++R +L  N  I A++ LP  +F  
Sbjct: 224 QSLTYTKP----GGYLFFMIPNH-LFESGQS---EKLRTFLKNNAHINAVLQLPLSIFKD 275

Query: 401 TNIATYLWILSNR-KTEERRGKVQL 424
              A  + +L    +  +   +V L
Sbjct: 276 EAHAKSILVLQKHGEQAKAPKQVLL 300


>gi|313888375|ref|ZP_07822043.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
 gi|312845572|gb|EFR32965.1| helicase C-terminal domain protein [Peptoniphilus harei
            ACS-146-V-Sch2b]
          Length = 3466

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 117/397 (29%), Gaps = 70/397 (17%)

Query: 29   TDFGKVILPFTLLRRLECALEP-TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT---S 84
             D+    L   + +  E   +   +  + E+       N + E   K       N    S
Sbjct: 1598 NDYKN--LDLEVYKSSEKEKQSIDKGELVEQISFEDIDNNNEEEVKKDKKTDRENIEGVS 1655

Query: 85   EYSLSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI 143
            E SL      N   NL       ++  A  + +  +  S  AR ++  +L K        
Sbjct: 1656 EVSLENYKIINEEENLPPSQRLKNNIEAINVLKALEKESRSARKDEQEILAKYIGWGGLS 1715

Query: 144  ELHPDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++  +          + + E+L    +          F TP+ V+               
Sbjct: 1716 DIFDEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE--------SL 1767

Query: 200  KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                     + +P+ GTG F+ +    + +             +G EL+  +  +     
Sbjct: 1768 SNLGFEKGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDSISGQIAK--- 1814

Query: 260  LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
                         + NI Q     +  F+   F   + N PFG     +    ++E++  
Sbjct: 1815 ---------ELYPNANI-QIKGFEETSFSNNLFDVAIGNIPFG-----EFKVADREYERN 1859

Query: 320  ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           + L   +   K       GG  A +       +G       ++RR
Sbjct: 1860 ---------------NFLIHDYFFAKTLDKVRDGGIIAFIT-----SSGTMDKKSEDVRR 1899

Query: 380  WLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            ++ E       + LP   F     T + + +  L  R
Sbjct: 1900 YISERAEFLGAIRLPNTTFKGVAGTEVTSDIIFLKKR 1936


>gi|299783015|gb|ADJ41013.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 289

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+                 + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      +        +DL   +     +        +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDLVVADLPVGY--- 154

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                   ++      R   G       S +  + +   +     GG    + L    LF
Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLLPGGF--GVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G   +  W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETAG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|2318061|gb|AAB66474.1| YeeA [Bacillus subtilis]
          Length = 879

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 74/257 (28%), Gaps = 58/257 (22%)

Query: 157 NIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATALLLDPD---------DALFKESPGMI 206
           +I+  +I+     E         T    +      L             D   K    + 
Sbjct: 274 DIFGSMIQAVASEESRSYLGMHYTSVPNIMKVIKPLFLDKLNQSFLDAYDDYTKLENLLT 333

Query: 207 R----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELE 248
           R      +DP CG+G FL      +     +                       +G E+E
Sbjct: 334 RIGKIKFFDPACGSGNFLIITYKELRRMEINIIKRLQELLGEYLYVPSVTLSQFYGIEIE 393

Query: 249 PETHAVCVAGMLI--RRLESDPRR------------DLSKNIQQGSTLSKDLFT-----G 289
              H V    + I   ++  + +               + +I+  + +  +        G
Sbjct: 394 DFAHDVAKLSLWIAEHQMNEELKNEVHNAVRPTLPLHTAGDIRCANAIRVEWTEVCPAQG 453

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLE 347
               Y   NPP+    ++      KEHK+  L  FG    K+ +G ML           +
Sbjct: 454 SEEVYVFGNPPYLGSKKQ-----NKEHKSDMLSIFG----KVKNGKMLDYISAWFYFGAK 504

Query: 348 LPPNGGGRAAIVLSSSP 364
                  + A V ++S 
Sbjct: 505 YASTTNAKVAFVSTNSV 521


>gi|16077744|ref|NP_388558.1| restriction type II methylase [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308513|ref|ZP_03590360.1| hypothetical protein Bsubs1_03813 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312836|ref|ZP_03594641.1| hypothetical protein BsubsN3_03769 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317760|ref|ZP_03599054.1| hypothetical protein BsubsJ_03723 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322039|ref|ZP_03603333.1| hypothetical protein BsubsS_03809 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81341851|sp|O31504|YEEA_BACSU RecName: Full=Putative DNA methyltransferase yeeA; AltName:
           Full=Modification methylase BsuMORF677P;
           Short=M.BsuMORF677P
 gi|2632990|emb|CAB12496.1| putative restriction type II methylase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 879

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 74/257 (28%), Gaps = 58/257 (22%)

Query: 157 NIYEHLIRRFG-SEVSEGAEDFMTPRDVVHLATALLLDPD---------DALFKESPGMI 206
           +I+  +I+     E         T    +      L             D   K    + 
Sbjct: 274 DIFGSMIQAVASEESRSYLGMHYTSVPNIMKVIKPLFLDKLNQSFLDAYDDYTKLENLLT 333

Query: 207 R----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELE 248
           R      +DP CG+G FL      +     +                       +G E+E
Sbjct: 334 RIGKIKFFDPACGSGNFLIITYKELRRMEINIIKRLQELLGEYLYVPSVTLSQFYGIEIE 393

Query: 249 PETHAVCVAGMLI--RRLESDPRR------------DLSKNIQQGSTLSKDLFT-----G 289
              H V    + I   ++  + +               + +I+  + +  +        G
Sbjct: 394 DFAHDVAKLSLWIAEHQMNEELKNEVHNAVRPTLPLHTAGDIRCANAIRVEWTEVCPAQG 453

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--FLMHLANKLE 347
               Y   NPP+    ++      KEHK+  L  FG    K+ +G ML           +
Sbjct: 454 SEEVYVFGNPPYLGSKKQ-----NKEHKSDMLSIFG----KVKNGKMLDYISAWFYFGAK 504

Query: 348 LPPNGGGRAAIVLSSSP 364
                  + A V ++S 
Sbjct: 505 YASTTNAKVAFVSTNSV 521


>gi|16125079|ref|NP_419643.1| hypothetical protein CC_0826 [Caulobacter crescentus CB15]
 gi|221233806|ref|YP_002516242.1| DNA modification methyltransferase-like protein [Caulobacter
           crescentus NA1000]
 gi|13422077|gb|AAK22811.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220962978|gb|ACL94334.1| DNA modification methyltransferase-related protein [Caulobacter
           crescentus NA1000]
          Length = 985

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 35/193 (18%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------------VPHGQELEPETHA 253
             + DP CG+G FL  A++ + D      +                    G E+E     
Sbjct: 407 FRVLDPACGSGNFLYVALHALKDIERRALVDAERLGLEVPTPRVGLACVRGIEIEEYAAE 466

Query: 254 VCVAGMLIRRLE----------SDPRRDLSKNIQQGSTLSK-DLFTGKR--FHYCLSNPP 300
           +    + I  L+          ++P       I+    L   D    +       + NPP
Sbjct: 467 LARVTLWIGDLQWHAKNNYRGFAEPILSSLDQIECRDALLNADGTEAQWPAVDVIVGNPP 526

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAI 358
           F    ++ +D +  ++       +   +P  +D    F+ +   K         G RA +
Sbjct: 527 F-LGSKRLRDGLGNDYVERLFSTYRGKVPAEAD----FVAYWIAKAWELVQAQQGRRAGL 581

Query: 359 VLSSSPLFNGRAG 371
           V ++S    G A 
Sbjct: 582 VTTNSV--RGGAS 592


>gi|304439303|ref|ZP_07399219.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304372222|gb|EFM25812.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 3645

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 118/394 (29%), Gaps = 72/394 (18%)

Query: 36   LPFTLLRRLECA--------LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
            LPF+ L+ ++          L   R    +K L       +    ++    +    SE S
Sbjct: 1778 LPFSYLKGIDKIDGDGNSLKLTTHRKETIDKKLEEYKEWKENNDLIRTDRENIEGVSEVS 1837

Query: 88   LSTLGSTNTRNNLESYIASFSD-NAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
            L      N    L       ++  A  + +  +  +  AR ++  +L K        ++ 
Sbjct: 1838 LENYKIINEEEILPPSQRLKNNIEAINVLKALEKENRSARKDEQEILAKYIGWGGLSDVF 1897

Query: 147  PDTVPD---RVMSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
             +          + + E+L    +          F TP+ V+                  
Sbjct: 1898 DEEKEGQWLDARNFLKENLTGEEYNRARESTLTAFYTPKVVIDAIYE--------SLSNL 1949

Query: 203  PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
               I  + +P+ GTG F+ +    + +             +G EL+  +  +        
Sbjct: 1950 GFEIGNILEPSAGTGRFIGNLPEEMKESN----------FYGVELDRISGQIAK------ 1993

Query: 263  RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                      + NI Q     +  F+   F   + N PFG     +    ++E++     
Sbjct: 1994 ------ELYPNANI-QIKGFEETNFSNNLFDVAIGNIPFG-----EFKVADREYERN--- 2038

Query: 323  RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                        + L   +   K       GG  + +       +G       ++RR++ 
Sbjct: 2039 ------------NFLIHDYFFAKTLDKVRDGGIISFIT-----SSGTMDKKSEDVRRYIS 2081

Query: 383  ENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            E       + LP   F     T + + +  L  R
Sbjct: 2082 ERAEFLGAIRLPNRTFKGVAGTEVTSDIIFLKKR 2115


>gi|227510222|ref|ZP_03940271.1| DNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227189874|gb|EEI69941.1| DNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 356

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 35/210 (16%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
               ++ DP  GTG  LT   N +        I       G E +     +      I+ 
Sbjct: 139 QKQLSMLDPAMGTGNLLTAIYNQL-----DKSIHVKPSISGIENDDAMFELAAGSFDIQH 193

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           + ++                         +                     E+  G   R
Sbjct: 194 IHAELF-----------------HEDAIQNVLAPVVDIAVSDLPVGYYPIDENTKGFNTR 236

Query: 324 FGPGLPKISDG-SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL 382
                   +DG S +  + +   ++    GG      L  S +F     S   ++ +W+ 
Sbjct: 237 -------SNDGHSYVHHLLIEFAMDHVKKGG--YGFFLVPSQIF---KTSEAKQLLKWMQ 284

Query: 383 ENDLIEAIVALPTDLFFRTNIATYLWILSN 412
            N  ++ ++ LPT+LF        + IL N
Sbjct: 285 GNVYLQGLLNLPTELFQNKASQKAIMILQN 314


>gi|94985034|ref|YP_604398.1| type III restriction system methylase [Deinococcus geothermalis DSM
           11300]
 gi|94555315|gb|ABF45229.1| type III restriction system methylase [Deinococcus geothermalis DSM
           11300]
          Length = 213

 Score = 42.3 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 31/157 (19%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            +LI+    +      +  TP  +V     L+          +  +     +P CG+G F
Sbjct: 1   MNLIK--SKQRVADHGEVFTPPWLVEAMLDLVGGE-------TERIDSRFLEPACGSGNF 51

Query: 220 LTDAMNH----VADCGSHHKIPPILV-------PHGQELEPETHAVCVAGM--LI---RR 263
           L   +      V                      +G EL  +  A C A +  ++     
Sbjct: 52  LVAVLRRKLAAVEVKYGTSNFEKRHYALLALMCLYGIELLADNVAECRANLQEILAEYLG 111

Query: 264 LESDPRRDLSK------NIQQGSTLSKDLFTGKRFHY 294
           L+ D     +       N+  G  L      G+   +
Sbjct: 112 LDEDDDLYRAASYVLAQNLVHGDALRMQTHGGQAIIF 148


>gi|298383504|ref|ZP_06993065.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298263108|gb|EFI05971.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 1076

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++   ++L   T        ++R L  D +       +     +        F   
Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D +      K+G  GR                 +   K       GG 
Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 R--KTEERRGKVQLI 425
              K E  + +  + 
Sbjct: 297 NLSKKEMSQDERLMT 311


>gi|255016390|ref|ZP_05288516.1| putative DNA methylase [Bacteroides sp. 2_1_7]
 gi|319644400|ref|ZP_07998854.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A]
 gi|317384120|gb|EFV65095.1| hypothetical protein HMPREF9011_04457 [Bacteroides sp. 3_1_40A]
          Length = 1943

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 86/287 (29%), Gaps = 60/287 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPARILEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D +      + I+              F 
Sbjct: 148 PDADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIE--------KPFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D +      ++   GR                 +   K       G
Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDTVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L +   + + V LP +LF     T + + L +L
Sbjct: 240 GIMAFITSQGVL-----NSTKTSVRNELFKQANLVSAVRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SN--RKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI 455
                K E  + +  +     +  +    G            +I+  
Sbjct: 295 QKHLNKKEMSQDERLMT----VIQTDTATGLTDNAYFIHHPERIVHT 337


>gi|163785432|ref|ZP_02180043.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879301|gb|EDP73194.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 150

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 23/149 (15%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TP  +V   T L+ +    L          + +P CG   FL      +   
Sbjct: 22  KKIWGIFFTPEWIVDFMTNLIDENKLNLSDLK------ILEPACGICQFLHG----IRKN 71

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
             H  I       G E+  E         +I  +E +   +  + I     L +   T  
Sbjct: 72  KKHIFIHASKRI-GVEINKE---------IIDYVEQNNSNNDIQIILHDYLLWE---TDS 118

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           RF   + NPP+G     +  +++ + +  
Sbjct: 119 RFDVIIGNPPYGIPSLSEHYSIKVDSETK 147


>gi|261885495|ref|ZP_06009534.1| restriction and modification enzyme CjeI [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 727

 Score = 42.3 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 70/240 (29%), Gaps = 33/240 (13%)

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389
           K S+    F      +         + AI+L SS L          + R  +L N  I +
Sbjct: 8   KSSNAIECF---FIERANRLLKSNSKVAIILPSSIL---NKDGVYEKTREIILRNFDIIS 61

Query: 390 IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQR 449
           I  L ++ F  T   T +  LS  K     G       +  + +++   +     ++   
Sbjct: 62  ITELGSNTFGATGTNTVILFLSK-KQTYANGF-----NSQSYENLKENIESSLDFSNLYL 115

Query: 450 RQILDIYVSR---ENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRK 506
            + L  Y      +  +F   L     GY  I        S  + K  L           
Sbjct: 116 LEGLLAYCEFMGYKKDEFREFLSG---GYGEI-------YSHDIFKEYLNEFRNSSALSG 165

Query: 507 LSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGR 566
           L    +    +  + + Q+         F+   +   + K L     K      I +   
Sbjct: 166 LKKSRRYKDSNEKEALEQK--------EFLNFCLNLEKEKILFFSLVKDTKTLIIKSPSE 217


>gi|320527864|ref|ZP_08029032.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
 gi|320131801|gb|EFW24363.1| hypothetical protein HMPREF9430_01145 [Solobacterium moorei F0204]
          Length = 2915

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 59/405 (14%), Positives = 114/405 (28%), Gaps = 79/405 (19%)

Query: 33   KVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
             VIL      RLE  L+     +           I+     K   ++F  T E     L 
Sbjct: 1053 DVIL-----YRLESDLDRLFQNITYTNPE---KTIEEVEIKKADAHNFKITEETLPEKLS 1104

Query: 93   S-TNTRNNLESY--IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDT 149
                  +NLE+   +       + +  D +    +++    G L  +       +     
Sbjct: 1105 PSERLNSNLEAISMLNRIERGERDL--DINAQEVLSKYVGWGGLADVFDESKEGQWEAAR 1162

Query: 150  VPDRVMSNIYEHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                  S + E+L    + +        F TP+ V+                        
Sbjct: 1163 ------SFLKENLSPSEYEAARESTLTAFYTPKTVIDSVYK--------TLAGMGFKSGN 1208

Query: 209  LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
            + +P+ G G F+ +  + +               +G EL+  +  +              
Sbjct: 1209 ILEPSMGVGNFIGNLPDEM----------SRSKFYGVELDSVSGRIGKL----------L 1248

Query: 269  RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              +    I+      +  F+   F   + N PFG+    D+D  +      +        
Sbjct: 1249 YPESEVQIKG---FEETTFSNNFFDAVIGNVPFGEYKVNDRDYNKNNFLIHDY------- 1298

Query: 329  PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                            K       GG  A +       +G     +  +RR++       
Sbjct: 1299 -------------FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYIAARAEFL 1340

Query: 389  AIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
              + LP D F     T + + +  L  R +   R +  +  A D 
Sbjct: 1341 GAIRLPNDTFKGVAGTEVTSDIIFLKKRDSIRERDEDWIHLAEDE 1385


>gi|218263717|ref|ZP_03477737.1| hypothetical protein PRABACTJOHN_03427 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222543|gb|EEC95193.1| hypothetical protein PRABACTJOHN_03427 [Parabacteroides johnsonii
           DSM 18315]
          Length = 841

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 71/260 (27%), Gaps = 52/260 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++       L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITCTIAEALHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++      D    +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILGHLHPDQKVRVQGFEKIEKPF--TDYFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D    + E    +        P           +   K       GG 
Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSQD-------PARRSAQKAIHNYFFLKSLDAVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++    +  +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPSNAPIREYMMSQANLVGVARLPNNLFTDNAGTEVGSDLIILQK 297

Query: 413 R---KTEERRGKVQLINATD 429
               K E    +   +    
Sbjct: 298 NSGKKRELYYNEKLFMQTEQ 317


>gi|52549321|gb|AAU83170.1| adenine specific DNA methyltransferase [uncultured archaeon
           GZfos26G2]
          Length = 1034

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 78/261 (29%), Gaps = 43/261 (16%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPTCG 215
           Y+  +  +  E       + TP +VV      +       F +  G+      L DP  G
Sbjct: 316 YDTFLGEYNPEERAKLGVYYTPPEVVDYIVKSIHKLLKEKFGKEKGLAEEGLKLLDPAAG 375

Query: 216 T--------GGFLTDAMNHVA--DCGSHHKIPPILVPHGQELEPETHAVC--VAGMLI-R 262
           T        G  L +  ++        + K   +   +  E++   + +      M + +
Sbjct: 376 TLTFIIRALGRALLELQDYHLGGMIPLNIKNHILADFYAFEIQVVPYIIGHLRVAMSLEK 435

Query: 263 RLESDPRRDLSKNIQQGSTLSKDL--------------------FTGKRFHYCLSNPPFG 302
               +   D        +TL                           +     L NPP+ 
Sbjct: 436 VWNYEFEEDDRFQFYLTNTLEMKEPEQELLLQQLTEEGREAMYVKEKEPILVVLGNPPYS 495

Query: 303 KKWEKDKDAVEK-EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
              E   + +EK         +    +  +SD  + F+     K+       G    + +
Sbjct: 496 VSSENKSEFIEKLMADYKREVKKERNIQPLSDDYIKFIRFAHWKISQTGK--GIFGYITN 553

Query: 362 SSPLFNGRAGSGESEIRRWLL 382
           +S L +G    G   +R+ LL
Sbjct: 554 NSYL-SGIIHRG---MRKELL 570


>gi|294102319|ref|YP_003554177.1| hypothetical protein Amico_1336 [Aminobacterium colombiense DSM
           12261]
 gi|293617299|gb|ADE57453.1| conserved hypothetical protein [Aminobacterium colombiense DSM
           12261]
          Length = 1148

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 22/236 (9%)

Query: 185 HLATALLLDPDD-ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH 243
            L  +L++D DD    K  P +   +        G       ++       +        
Sbjct: 608 RLWLSLIVDEDDMDDIKPLPNLDYKI------VCGDSLLGYPYIPRGLDKVEELKRQFFD 661

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKN--IQQGSTLSKDLFTGKRFHYCLSNPPF 301
             +   + +        I  L  +   +L     I      S+       F   ++NPP+
Sbjct: 662 EVDPNKKRNLRNRIDEAIFGLFKNTEGNLGYKVTIDYKINFSEVFSQNGGFDVVIANPPY 721

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361
            +  +   + ++  +K+              D   LF     + L+           ++ 
Sbjct: 722 IQLQKLRGNPLQNAYKSQNFEVHNA----NGDIYCLFYEKGMDILKK-------CGHLVF 770

Query: 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEE 417
            +     RA  GE ++RR+ LE + ++ ++ L   +F    + T + I+   K + 
Sbjct: 771 ITSNKWMRAAYGE-KLRRFFLEYNPLQ-LIDLGPGIFDSATVDTNILIIQKNKNKN 824


>gi|225032084|gb|ACN79575.1| DraRI [synthetic construct]
          Length = 956

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 76/277 (27%), Gaps = 60/277 (21%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLA 187
               LY + K           +  ++   +++  + +   +         T   D++ + 
Sbjct: 266 NRDELYLLHKAALENNW--ARIQPQIFGVLFQSSMDK---KEQHAKGAHYTSEADIMRVV 320

Query: 188 TALLLDPDDALFKESPGMIR-----------TLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
              ++ P     + +                 + DP CG+G FL  A   +    +   +
Sbjct: 321 LPTIVTPFQRQIEAATTQKELRAILDELASFQVLDPACGSGNFLYVAYRELRRLEARALL 380

Query: 237 PPI----------------LVPHGQELEPETHAVCVAGMLI---------------RRLE 265
                                 HG E +P    +    + +                 L+
Sbjct: 381 RLRDLSAPGTALPPARVSIRQMHGLEYDPFGVELAKVTLTLAKELAIREMHDLLGNTGLD 440

Query: 266 SD---PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            D   P  +L   I QG  L        R    + NPPF  K +  ++      K     
Sbjct: 441 FDQPLPLDNLDDRIVQGDALFTPW---PRVDAIVGNPPFQSKNKLQREMGAAYVKKLRAH 497

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
              P +P          ++   K       G RA +V
Sbjct: 498 --YPDVP--GRADYC--VYWIRKAHDQLGSGQRAGLV 528


>gi|148292178|dbj|BAF62893.1| hypothetical protein [uncultured bacterium]
          Length = 1027

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 15/142 (10%)

Query: 114 IFE-DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI--RRFGSEV 170
           IFE   D    +   E A +L  + +    I     +        +++ LI  R+F    
Sbjct: 293 IFEIARDIIKPLDPQEAANILGILARAALKIRGMGASGASDFTGLVFQRLIADRKF---- 348

Query: 171 SEGAEDFMTPRDVVHLATALLLD-----PDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
                 F T      L   L +D     P         G   ++ D  CGTGG L  A +
Sbjct: 349 ---LATFYTLPASAELLAGLAIDKEGNFPMKQRANGEAGPDFSIADFACGTGGLLVAAAH 405

Query: 226 HVADCGSHHKIPPILVPHGQEL 247
            + +  +          H   +
Sbjct: 406 RIGNIYAEKHAVDRDELHKMMM 427


>gi|15807258|ref|NP_295988.1| DNA modification methyltransferase-like protein [Deinococcus
           radiodurans R1]
 gi|6460073|gb|AAF11813.1|AE002059_3 DNA modification methyltransferase-related protein [Deinococcus
           radiodurans R1]
          Length = 840

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 76/277 (27%), Gaps = 60/277 (21%)

Query: 129 KAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLA 187
               LY + K           +  ++   +++  + +   +         T   D++ + 
Sbjct: 266 NRDELYLLHKAALENNW--ARIQPQIFGVLFQSSMDK---KEQHAKGAHYTSEADIMRVV 320

Query: 188 TALLLDPDDALFKESPGMIR-----------TLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
              ++ P     + +                 + DP CG+G FL  A   +    +   +
Sbjct: 321 LPTIVTPFQRQIEAATTQKELRAILDELASFQVLDPACGSGNFLYVAYRELRRLEARALL 380

Query: 237 PPI----------------LVPHGQELEPETHAVCVAGMLI---------------RRLE 265
                                 HG E +P    +    + +                 L+
Sbjct: 381 RLRDLSAPGTALPPARVSIRQMHGLEYDPFGVELAKVTLTLAKELAIREMHDLLGNTGLD 440

Query: 266 SD---PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
            D   P  +L   I QG  L        R    + NPPF  K +  ++      K     
Sbjct: 441 FDQPLPLDNLDDRIVQGDALFTPW---PRVDAIVGNPPFQSKNKLQREMGAAYVKKLRAH 497

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
              P +P          ++   K       G RA +V
Sbjct: 498 --YPDVP--GRADYC--VYWIRKAHDQLGSGQRAGLV 528


>gi|224586490|ref|YP_002640391.1| hypothetical protein BVAVS116_O0003 [Borrelia valaisiana VS116]
 gi|224497094|gb|ACN52728.1| hypothetical protein BVAVS116_O0003 [Borrelia valaisiana VS116]
          Length = 1065

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 28/184 (15%)

Query: 98  NNLESYI-ASFS--DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH-------- 146
           +N+ES+I  +FS   N   + +D    S    L    +L  I    + I+          
Sbjct: 265 SNIESFIPTNFSLIQNIIKLIKDIHKDSEFDCL--KWILESIISIVNNIDTELIFNEFSF 322

Query: 147 --PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
                         YE  + ++ + + +    + TP  +V+   + L +     F    G
Sbjct: 323 TSNKENSKDPYLYFYEDFLAKYDANLRKAKGVYYTPSSIVNFIVSSLNEILKGEFNLDKG 382

Query: 205 M----IRTLYDPTCGTGGFLTDAMNHV--ADCGSHHKIPPIL-------VPHGQELEPET 251
                  T+ D   GTG FL + +  +   +                    +G E     
Sbjct: 383 FANKDKVTVLDFATGTGTFLLEVIRTIILKEIPKESGRQKDYINLHILKNLYGFEYLMAP 442

Query: 252 HAVC 255
           +AV 
Sbjct: 443 YAVA 446


>gi|224024415|ref|ZP_03642781.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM
           18228]
 gi|224017637|gb|EEF75649.1| hypothetical protein BACCOPRO_01139 [Bacteroides coprophilus DSM
           18228]
          Length = 1913

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 49/247 (19%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENKPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++      D    IQ    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPDQKVRIQGYEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D +         ++ R        +  +  FL     K       GG 
Sbjct: 194 ISNIPFGDVAVFDPEFTNSH----DMARRSA---SKTIHNYFFL-----KSLDAVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++ +  +  +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPTNAPIREYMMNHANLVGVARLPNNLFTENAGTEVGSDLIILQK 297

Query: 413 RKTEERR 419
              +  +
Sbjct: 298 NSGKNGK 304


>gi|184155025|ref|YP_001843365.1| hypothetical protein LAF_0549 [Lactobacillus fermentum IFO 3956]
 gi|183226369|dbj|BAG26885.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 289

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+                 + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      +        +DL   +     +        +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDLVVADLPVGY--- 154

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                   ++      R   G       S +  + +   +     GG    + L    LF
Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLMPGGF--GVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G   +  W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETAG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|171780304|ref|ZP_02921208.1| hypothetical protein STRINF_02092 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281652|gb|EDT47087.1| hypothetical protein STRINF_02092 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 917

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 44/212 (20%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             ++  Y++L+ +      +         D            +     +    I+   DP
Sbjct: 311 DDLTASYQNLVDKINENEDKDI------TDKTRCENRNTFIRELESLLDRISNIK-FLDP 363

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI------------------LVPHGQELEPETHAV 254
            CG+G FL      +                                 +G EL+   H V
Sbjct: 364 ACGSGNFLIITYKEIRRLEVKILKSLRELRQDGTIDFFETSKISLNQFYGIELDDFAHEV 423

Query: 255 CVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDL-----FTGKRFHYCL 296
               + I   + +   +              + NI QG+ L  D             Y +
Sbjct: 424 ARLSLWIAEYQMNLEAENEINLKSAFLPLRDAGNITQGNALRLDWNEILPHQSDDEIYLI 483

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            NPP+    +      +++ K      F   L
Sbjct: 484 GNPPY-IGAKLQNKEQKEDLKGAIGEPFKYKL 514


>gi|312278240|gb|ADQ62897.1| type I restriction-modification system methyltransferase subunit
           [Streptococcus thermophilus ND03]
          Length = 147

 Score = 42.3 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 26/122 (21%), Gaps = 15/122 (12%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73
           W       G    T +   I      + L          V   + +    G +       
Sbjct: 2   WALLNKTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYGQDPVRALDY 61

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLE-----SYIASFS--------DNAKAIFEDFDF 120
                 +    +       +T                 F+        D+ + IF+   F
Sbjct: 62  MKQKLGYAIQPKEFFKDWEATIHEERFNIPMISDTFGHFNQQIAFEAKDDFEGIFDGMRF 121

Query: 121 SS 122
            +
Sbjct: 122 DN 123


>gi|327295586|ref|XP_003232488.1| RNA methylase [Trichophyton rubrum CBS 118892]
 gi|326465660|gb|EGD91113.1| RNA methylase [Trichophyton rubrum CBS 118892]
          Length = 454

 Score = 42.3 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFG 167
            I E F F +     ++  A   + + + F+       +P T  + V+  IY   + R+ 
Sbjct: 117 EIIESFSFLAFEGPIKMVDADEKFCVFEEFAHQLASSGNPKTHTEPVLKRIY---LGRWV 173

Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +E      +      R  +   +        +         +  YDP  GTG FL  A +
Sbjct: 174 TEGGRTEINTYNLKKRKYISTTSMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             A                     ET  +         L S          +   T + D
Sbjct: 234 FGAVTCGSDIDGRSFRGKEATSNTETGVIA--NFKQYGLLS----------RFLDTFTSD 281

Query: 286 LF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           L      + + F   + +PP+G +        + + + GEL  F  G+P     + +F
Sbjct: 282 LTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMFQ-GVPSYKRENYIF 338


>gi|304382581|ref|ZP_07365075.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304336206|gb|EFM02448.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 1497

 Score = 42.3 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIAEALSAADVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+LL+N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLLQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|257090264|ref|ZP_05584625.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256999076|gb|EEU85596.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 335

 Score = 42.3 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|328770831|gb|EGF80872.1| hypothetical protein BATDEDRAFT_24341 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 473

 Score = 42.3 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 16/188 (8%)

Query: 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWIL--SNRKTEERRGKV-QLINATDLW 431
           S +R  +++N ++  I+  P      T  +T       +  K +     +   I+   + 
Sbjct: 123 SFLREKVIDNGVLGWILGPP-----GTGKSTTALAFASTLDKNDWVVTWIHLYIDCYPVC 177

Query: 432 TSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML--DYRTFGYRRIKVLRPLRMSFI 489
             +    KK + I D    ++ DI    +  K   +    Y + G + I V +       
Sbjct: 178 VRLEGNSKKSQEIYDSNIDKLFDILHKVDESKQHIVFIDGYTSNGQKHIDVQQACYSWLE 237

Query: 490 LDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
            D+     +        +S  +++   + +   ++Q+  Y W E      +     K   
Sbjct: 238 EDREKRRLV----VVCSMSSRYKAKLEEDMLLNLKQLNVYSWKEEDQFAGVMLAIKKGPD 293

Query: 550 V--KASKS 555
           +  K +K+
Sbjct: 294 LIRKLAKA 301


>gi|298252842|ref|ZP_06976636.1| methyltransferase [Gardnerella vaginalis 5-1]
 gi|297533206|gb|EFH72090.1| methyltransferase [Gardnerella vaginalis 5-1]
          Length = 557

 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 35/139 (25%)

Query: 211 DPTCGTGGFLTDAMNHVADC-------------------GSHHKIPPILVPHGQELEPET 251
           DP CG+G FLT+    +                       +      I   HG E+    
Sbjct: 4   DPACGSGNFLTETFLCLRKLENRAIELMLGGQGYVDLGDNNSLIKVSIDQFHGIEINDFA 63

Query: 252 HAVCVAGMLIRRLE-------------SDPRRDLSKNIQQGSTL---SKDLFTGKRFHYC 295
             V    + I   +                    S NI + + L     DL +  R  Y 
Sbjct: 64  VCVAKTALWIAEQQALDDTESIAGCALPHLPLHDSGNIVRANALQYDWNDLLSADRCSYV 123

Query: 296 LSNPPFGKKWEKDKDAVEK 314
           + NPPF  ++ K  +  E 
Sbjct: 124 IGNPPFVGQYLKSVNQTED 142


>gi|154483947|ref|ZP_02026395.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC
           27560]
 gi|149734989|gb|EDM50875.1| hypothetical protein EUBVEN_01654 [Eubacterium ventriosum ATCC
           27560]
          Length = 2219

 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 72/264 (27%), Gaps = 55/264 (20%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
            + +P+ G G F     + +               +G E++  T  +             
Sbjct: 688 NILEPSMGIGNFFGSMPDAMQ----------NCKLYGVEMDDVTGRIAK----------- 726

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            +   + +I          F    F   + N PFG     D    +   +  +       
Sbjct: 727 -QLYQNASITIA-GFEDTKFPDNFFDAAVGNVPFGDYKVYDPKYNKLNFRVHDY------ 778

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                     FL    +++      GG AA + +   +           +RR+L +   +
Sbjct: 779 ----------FLAKALDQIRP----GGIAAFITTKGTMDKANP-----NVRRYLAQRAEL 819

Query: 388 EAIVALPTDLF-FRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
              + LP   F           IL  +K E +      I    +      +G        
Sbjct: 820 IGAIRLPNTAFKENAGTEVTSDILFFKKRERQID----IEPDWVHLGYTKDGIPVNSYFV 875

Query: 447 DQRRQILDI--YVSRENGKFSRML 468
           +    +L    Y +   G  SR  
Sbjct: 876 EHPDMMLGTMEYDTGRFGDKSRYT 899


>gi|227519325|ref|ZP_03949374.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
 gi|227555467|ref|ZP_03985514.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis HH22]
 gi|229545434|ref|ZP_04434159.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
 gi|229549678|ref|ZP_04438403.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis ATCC 29200]
 gi|255972375|ref|ZP_05422961.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975478|ref|ZP_05426064.1| adenine-specific DNA methylase [Enterococcus faecalis T2]
 gi|256619458|ref|ZP_05476304.1| adenine-specific DNA methylase [Enterococcus faecalis ATCC 4200]
 gi|256762912|ref|ZP_05503492.1| adenine-specific DNA methylase [Enterococcus faecalis T3]
 gi|256853498|ref|ZP_05558868.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256959297|ref|ZP_05563468.1| adenine-specific DNA methylase [Enterococcus faecalis DS5]
 gi|256961529|ref|ZP_05565700.1| adenine-specific DNA methylase [Enterococcus faecalis Merz96]
 gi|256964745|ref|ZP_05568916.1| adenine-specific DNA methylase [Enterococcus faecalis HIP11704]
 gi|257082198|ref|ZP_05576559.1| adenine-specific DNA methylase [Enterococcus faecalis E1Sol]
 gi|257087188|ref|ZP_05581549.1| adenine-specific DNA methylase [Enterococcus faecalis D6]
 gi|257416419|ref|ZP_05593413.1| adenine-specific DNA methylase [Enterococcus faecalis AR01/DG]
 gi|257419664|ref|ZP_05596658.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257422229|ref|ZP_05599219.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|293382206|ref|ZP_06628148.1| adenine-specific methyltransferase [Enterococcus faecalis R712]
 gi|293388625|ref|ZP_06633121.1| adenine-specific methyltransferase [Enterococcus faecalis S613]
 gi|300861099|ref|ZP_07107186.1| N-6 DNA Methylase [Enterococcus faecalis TUSoD Ef11]
 gi|307272825|ref|ZP_07554072.1| N-6 DNA Methylase [Enterococcus faecalis TX0855]
 gi|307275922|ref|ZP_07557055.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|307277705|ref|ZP_07558791.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|307287872|ref|ZP_07567905.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|307295901|ref|ZP_07575733.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|312900870|ref|ZP_07760164.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
 gi|312908302|ref|ZP_07767266.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 512]
 gi|312910624|ref|ZP_07769466.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 516]
 gi|312951276|ref|ZP_07770178.1| N-6 DNA Methylase [Enterococcus faecalis TX0102]
 gi|227073219|gb|EEI11182.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX0104]
 gi|227175407|gb|EEI56379.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis HH22]
 gi|229305158|gb|EEN71154.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis ATCC 29200]
 gi|229309470|gb|EEN75457.1| site-specific DNA-methyltransferase (adenine-specific)
           [Enterococcus faecalis TX1322]
 gi|255963393|gb|EET95869.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968350|gb|EET98972.1| adenine-specific DNA methylase [Enterococcus faecalis T2]
 gi|256598985|gb|EEU18161.1| adenine-specific DNA methylase [Enterococcus faecalis ATCC 4200]
 gi|256684163|gb|EEU23858.1| adenine-specific DNA methylase [Enterococcus faecalis T3]
 gi|256711957|gb|EEU26995.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256949793|gb|EEU66425.1| adenine-specific DNA methylase [Enterococcus faecalis DS5]
 gi|256952025|gb|EEU68657.1| adenine-specific DNA methylase [Enterococcus faecalis Merz96]
 gi|256955241|gb|EEU71873.1| adenine-specific DNA methylase [Enterococcus faecalis HIP11704]
 gi|256990228|gb|EEU77530.1| adenine-specific DNA methylase [Enterococcus faecalis E1Sol]
 gi|256995218|gb|EEU82520.1| adenine-specific DNA methylase [Enterococcus faecalis D6]
 gi|257158247|gb|EEU88207.1| adenine-specific DNA methylase [Enterococcus faecalis ARO1/DG]
 gi|257161492|gb|EEU91452.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257164053|gb|EEU94013.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|291080390|gb|EFE17754.1| adenine-specific methyltransferase [Enterococcus faecalis R712]
 gi|291082000|gb|EFE18963.1| adenine-specific methyltransferase [Enterococcus faecalis S613]
 gi|300850138|gb|EFK77888.1| N-6 DNA Methylase [Enterococcus faecalis TUSoD Ef11]
 gi|306496232|gb|EFM65811.1| N-6 DNA Methylase [Enterococcus faecalis TX0411]
 gi|306501017|gb|EFM70324.1| N-6 DNA Methylase [Enterococcus faecalis TX0109]
 gi|306505584|gb|EFM74768.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|306507252|gb|EFM76389.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|306510439|gb|EFM79462.1| N-6 DNA Methylase [Enterococcus faecalis TX0855]
 gi|310625716|gb|EFQ08999.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 512]
 gi|310630810|gb|EFQ14093.1| N-6 DNA Methylase [Enterococcus faecalis TX0102]
 gi|311289172|gb|EFQ67728.1| N-6 DNA Methylase [Enterococcus faecalis DAPTO 516]
 gi|311291969|gb|EFQ70525.1| N-6 DNA Methylase [Enterococcus faecalis TX0470]
 gi|315025988|gb|EFT37920.1| N-6 DNA Methylase [Enterococcus faecalis TX2137]
 gi|315028909|gb|EFT40841.1| N-6 DNA Methylase [Enterococcus faecalis TX4000]
 gi|315034538|gb|EFT46470.1| N-6 DNA Methylase [Enterococcus faecalis TX0027]
 gi|315147646|gb|EFT91662.1| N-6 DNA Methylase [Enterococcus faecalis TX4244]
 gi|315152628|gb|EFT96644.1| N-6 DNA Methylase [Enterococcus faecalis TX0031]
 gi|315157268|gb|EFU01285.1| N-6 DNA Methylase [Enterococcus faecalis TX0043]
 gi|315159897|gb|EFU03914.1| N-6 DNA Methylase [Enterococcus faecalis TX0312]
 gi|315161380|gb|EFU05397.1| N-6 DNA Methylase [Enterococcus faecalis TX0645]
 gi|315163676|gb|EFU07693.1| N-6 DNA Methylase [Enterococcus faecalis TX1302]
 gi|315167492|gb|EFU11509.1| N-6 DNA Methylase [Enterococcus faecalis TX1341]
 gi|315169392|gb|EFU13409.1| N-6 DNA Methylase [Enterococcus faecalis TX1342]
 gi|315574546|gb|EFU86737.1| N-6 DNA Methylase [Enterococcus faecalis TX0309B]
 gi|315581812|gb|EFU94003.1| N-6 DNA Methylase [Enterococcus faecalis TX0309A]
 gi|323481118|gb|ADX80557.1| N-6 DNA Methylase family protein [Enterococcus faecalis 62]
 gi|327535498|gb|AEA94332.1| adenine-specific methyltransferase [Enterococcus faecalis OG1RF]
          Length = 335

 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|160944382|ref|ZP_02091610.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
 gi|158444164|gb|EDP21168.1| hypothetical protein FAEPRAM212_01892 [Faecalibacterium prausnitzii
            M21/2]
          Length = 2409

 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 78/277 (28%), Gaps = 72/277 (25%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + +  S       T   V+               ++       + +P+ G G F     
Sbjct: 872  EYAAARSSTLNAHYTAPVVIRSIY--------DAVEKMGFQSGNILEPSMGVGNFFGMLP 923

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279
            + + D             +G EL+  T  +       A + +   E+  RRD        
Sbjct: 924  DTMQD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 966

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                        +   + N PFG+    DK      +K G            S  +  F 
Sbjct: 967  ------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFFA 999

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
              +          GG  A V            S +S  R+ + E   +   + LP + F 
Sbjct: 1000 KAI-----DQVRPGGIIAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFR 1049

Query: 399  --FRTNIATYLWILSNRKTEERRG--KVQLINATDLW 431
                T++ + +  L  R          VQL    D +
Sbjct: 1050 ANAGTDVVSDIIFLQKRDRPADIEPAWVQLGKTEDGF 1086


>gi|58616366|ref|YP_195496.1| N6 adenine-specific DNA methyltransferase protein, N12 class
           [Azoarcus sp. EbN1]
 gi|56315828|emb|CAI10472.1| N6 adenine-specific DNA methyltransferase protein, N12 class
           [Aromatoleum aromaticum EbN1]
          Length = 946

 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 38/144 (26%), Gaps = 32/144 (22%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI-------- 239
             +L        K     I  + DP CG+G FL  A+  + D      +           
Sbjct: 353 AQVLFLGYLERLK-----IFRVLDPACGSGNFLYLALRALKDLEHRANLDAEALGLHRQL 407

Query: 240 ------LVPHGQELEPETHAVCVAG--------MLIRRLES--DPRRDLSKNIQQGSTLS 283
                     G E+      +            ML    +   +P      +I+    L 
Sbjct: 408 TIETSPDNVRGIEINAYAAELARVTVWIGEIQWMLKHGYDCRRNPILARLDHIENRDALL 467

Query: 284 K-DLFTGKR--FHYCLSNPPFGKK 304
             D    +       + NPPF   
Sbjct: 468 NPDCTEAEWPVVDVIVGNPPFLGD 491


>gi|88856888|ref|ZP_01131540.1| hypothetical protein A20C1_03538 [marine actinobacterium PHSC20C1]
 gi|88813856|gb|EAR23726.1| hypothetical protein A20C1_03538 [marine actinobacterium PHSC20C1]
          Length = 570

 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 63/198 (31%), Gaps = 22/198 (11%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
              +      T + VV+    L+                 L +P+ G G FL  A++ + 
Sbjct: 23  NNEKMRGAIFTKQTVVNFMLDLIGYDSADNL-----FDVKLLEPSFGGGRFLLGAVDRLL 77

Query: 229 DCGSHHKIPPILVP----HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           +       P +        G EL+ E+     A +    +E+         +     ++ 
Sbjct: 78  ESWRRQSAPRVDQLLDAIRGVELDTESFVSFKARLGNHLVEAGLPDHEIARLLDAWLVNA 137

Query: 285 DLFTGK---RFHYCLSNPPFGKKWEKDKDAVEKEHK--NGELGRFGPGLPKISDGSMLFL 339
           +    +    F + + NPP+ ++   D   +    K  +  +GR    +P        F+
Sbjct: 138 NYLWAEFEFEFDFVIGNPPYVRQELIDPHQLVAYRKAFSTMVGRADLYVP--------FI 189

Query: 340 MHLANKLELPPNGGGRAA 357
               + L +        A
Sbjct: 190 EKSLDHLNVGGKLSFICA 207


>gi|308185126|ref|YP_003929259.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
 gi|308061046|gb|ADO02942.1| adenine specific DNA methyltransferase [Helicobacter pylori SJM180]
          Length = 2834

 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 110/364 (30%), Gaps = 74/364 (20%)

Query: 135  KICKNFSGIELHPDTVPDRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATA 189
            +I   FSG                +E L        F    S   + + TP     L   
Sbjct: 920  EILAQFSGWGALESYFKKDQHPKEFEELKALLTKDEFRRAYSSTRDAYYTP----KLVID 975

Query: 190  LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
             +    D L   +    + +++P+ GTG F+           +H          G EL+P
Sbjct: 976  SIYQALDRLGFNNDNHPKEIFEPSLGTGKFI-----------AHAPSDKNYRFRGTELDP 1024

Query: 250  ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             +  +               + L  N    +T  ++    + +   + NPP+G    K  
Sbjct: 1025 ISTNIS--------------QFLYPNQVIQNTALENHQFYQEYDAFVGNPPYG--NHKIY 1068

Query: 310  DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
               +KE  N  +  +             FL     +L+      G  A V+  S  F   
Sbjct: 1069 SFYDKELSNESVHNY-------------FLGKAIKELKDD----GIGAFVV--SSWFMDA 1109

Query: 370  AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
                  ++R  + +N      + LP  +F  T       I+  +K  E+        A  
Sbjct: 1110 KNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGVEKATNQSFTKAMP 1166

Query: 430  LWTSIRN----------EGKKRRIINDDQRRQILDI---YVSRENGKFSRML---DYRTF 473
             +  I N          +  +        + +I++    +   +  K  R     D   F
Sbjct: 1167 YYDKIINSLDDETLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQEKLQRWYEKIDTANF 1226

Query: 474  GYRR 477
            GYR 
Sbjct: 1227 GYRE 1230


>gi|218960674|ref|YP_001740449.1| putative Modification methylase TaqI (Adenine-specific
           methyltransferase TaqI) (M.TaqI) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729331|emb|CAO80242.1| putative Modification methylase TaqI (Adenine-specific
           methyltransferase TaqI) (M.TaqI) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 471

 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 69/231 (29%), Gaps = 33/231 (14%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228
           ++   +  F TP  +V L   L+                 + +P CG   FL     +  
Sbjct: 37  DIKRDSGMFFTPEWIVDLMVNLI-----DDTNYVEKEGIKILEPACGLAQFLLGIKRNKP 91

Query: 229 DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
              S  K        G E+  E          I    S+     + ++ +   L     T
Sbjct: 92  SLFSQAK------LFGVEINQE----------IINYLSNLNIANAIDLNRADYLL--WQT 133

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLE 347
              F   + NPP+G     +   ++      E  +               F+    N L+
Sbjct: 134 RSYFDLIIGNPPYGIPSLSEHYTIKTNPATKEKYKKLYATWFGKYNVYGAFIEKSINLLK 193

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                     IV  +  +          ++R +L +N   E I+ L  D+F
Sbjct: 194 DNGQL---IFIVPPTFMIL-----DEFKKLRLFLAQNGKTE-IIYLGADIF 235


>gi|127511926|ref|YP_001093123.1| Eco57I restriction endonuclease [Shewanella loihica PV-4]
 gi|126637221|gb|ABO22864.1| Eco57I restriction endonuclease [Shewanella loihica PV-4]
          Length = 595

 Score = 42.3 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 92/318 (28%), Gaps = 50/318 (15%)

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
            ++   F      P      ++ +IY  ++    S +      + TP  +V   + LL  
Sbjct: 91  GELIAQF------PVEDAGYLIGSIYTVML---PSSLRSSLGAYYTPPPLV---SRLLDL 138

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP---E 250
            + A F    G   T  DP CG G FL      +            L   GQ L     +
Sbjct: 139 AEKAGFDFGKG---TAIDPACGGGAFLAPVAMRMIKRMPKASAEWTLKRIGQRLRGIEID 195

Query: 251 THAVCVAGMLIRRLESDPRRDLSKN-----IQQGSTLSKDLFTGKRFHYCLSNPPFGKKW 305
             A      +I      P    +K      +  G  L  ++     F   + NPP+G+  
Sbjct: 196 PFA-AWMSSVILEASILPLCVEAKRRLPNLVTVGDAL--NVSNMGTFDLVIGNPPYGRTT 252

Query: 306 EKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSS 363
              +             R   G       ++  LF               G  A +  +S
Sbjct: 253 LSPE-------MRDTYSRSLYGH-----ANLYGLFTDLALR----LAADNGVVAYLTPTS 296

Query: 364 PLFNGRAGSGESEIRRWLLENDLIEAI--VALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            L     G     +R  L     ++ I  ++    +F      T L      K+ +    
Sbjct: 297 FL----GGQYFKSLRELLTAETTVKGIDFISDRNGVFDDVLQETLLTAYKKEKSNQSANI 352

Query: 422 VQLINATDLWTSIRNEGK 439
             ++        +   GK
Sbjct: 353 SLIMPQGLNSAKVEKIGK 370


>gi|167527538|ref|XP_001748101.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773519|gb|EDQ87158.1| predicted protein [Monosiga brevicollis MX1]
          Length = 907

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 57/211 (27%), Gaps = 28/211 (13%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            L+R F  +      +     ++      ++                  YDP CGT   L
Sbjct: 638 DLMRAFDLKTRNMIGNTSMDPELAFFMANMVQA----------QPGTLAYDPFCGTASLL 687

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPET---HAVCVAGMLIRRLESDPRRDLSKNIQ 277
                             ++   G+     T           ++   E     D   ++ 
Sbjct: 688 VPVAYFGGMTMGSDIAFQVVHGVGKTSRQGTGSKTRGPKEN-ILANYEQYELLDKFGDVL 746

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKW------EKDKDAVEKEHKNGELGRFGPGLPKI 331
                +        F   +++PP+G +        KD   V +E +     RF    P+ 
Sbjct: 747 VADAANPSFRQDILFDMIVADPPYGIREPARRIGAKDSRPVPEEFR---DNRF----PRS 799

Query: 332 SDGSMLFL-MHLANKLELPPNGGGRAAIVLS 361
               +  +   L +        GGR A  + 
Sbjct: 800 KQYGLGAVFTDLISFGAHRLVLGGRLAFWMP 830


>gi|313811491|gb|EFS49205.1| conserved domain protein [Propionibacterium acnes HL083PA1]
          Length = 852

 Score = 41.9 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 28/230 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
             + R      + +  + TP  +        L+           +  ++ +P  G+G F 
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTEEILHLSVCEPALGSGAFA 567

Query: 221 TD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
            +     A  ++    +          +  +L+     + +    +  ++ +        
Sbjct: 568 IEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFAE 625

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPKI 331
           I    TL  D          L  P FG    +    +   H    ++    +     P  
Sbjct: 626 I----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPPT 676

Query: 332 SDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 D----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 722


>gi|317177267|dbj|BAJ55056.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F16]
          Length = 545

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSSYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++    K+H N        
Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKENFKQHFN-------- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|218531262|ref|YP_002422078.1| type II restriction enzyme, methylase subunit [Methylobacterium
           chloromethanicum CM4]
 gi|218523565|gb|ACK84150.1| type II restriction enzyme, methylase subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 929

 Score = 41.9 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 36/168 (21%)

Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPG----------- 204
           +I+  +I+    E   G+     T    +      L   D     ++ G           
Sbjct: 281 DIFGSMIQAVADEGERGSLGMHYTSVPNIMKVLGPLFLDDLRAQLDAAGDNVRKLRNLRK 340

Query: 205 --MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHA 253
                 ++DP CG+G FL  A   + +                      +G E++     
Sbjct: 341 RLANIRVFDPACGSGNFLVIAYIRMREIEHEIVKLTDDEPRSVIPLSNFYGIEIKDFAAE 400

Query: 254 VCVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT 288
           +    +LI   + D R                +  I+ G+ L +D + 
Sbjct: 401 IARLALLIAEFQCDVRFISQQVARSLVLPLKKTGQIKTGNALREDWWK 448


>gi|209883316|ref|YP_002287173.1| restriction methylase [Oligotropha carboxidovorans OM5]
 gi|209871512|gb|ACI91308.1| restriction methylase [Oligotropha carboxidovorans OM5]
          Length = 599

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 76/279 (27%), Gaps = 46/279 (16%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TP  +      L  +               + DP  G G FL +    +       
Sbjct: 128 GAFYTPPALTQRLLDLADEGGVD------WSTARVLDPASGGGAFLLEVAARMRLALEGS 181

Query: 235 K-----IPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLF 287
           +             G EL+P   ++  A +   +  L     R     ++   TL +   
Sbjct: 182 EPAFVLAQLGTRLSGLELDPHAASLSQAALEIFLSDLSMASGRTTPVFVKVCDTLEE--T 239

Query: 288 TGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
              ++   + NPP+G       + A       G    +G            F        
Sbjct: 240 PVAQYDLVIGNPPYGRVTLSAAQRARYARSLYGHANLYGV-----------FTDVALRWT 288

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN------DLIEAIVALPTDLFFR 400
                 GG  A +  +S L     G   + +R+ L +       D + A       +F  
Sbjct: 289 RP----GGVIAYLTPTSVL----GGQYYTALRQLLADQAPPIAIDFVHA----RRGVFED 336

Query: 401 TNIATYLWILSN-RKTEERRGKVQLINATDLWTSIRNEG 438
               T L +     K +  +     ++        +N  
Sbjct: 337 VLQETLLALYRKGGKRDRFQVHYLNVDNEREARLTKNGK 375


>gi|91773585|ref|YP_566277.1| putative RNA methylase [Methanococcoides burtonii DSM 6242]
 gi|91712600|gb|ABE52527.1| Nucleic acid binding protein [Methanococcoides burtonii DSM 6242]
          Length = 344

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 56/230 (24%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
           Y   F+ + K    D +F +    L +  +L  +  +        +          Y  +
Sbjct: 128 YRKGFNADLKD--PDVEFRAI---LSEKCVLGSVIASVDRSAY--EARAPHKKPFFYPGV 180

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +R               PR V      + L  +  +          ++DP CGT G L +
Sbjct: 181 LR---------------PR-VARALVNMALIKEGDV----------VFDPFCGTAGILVE 214

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-AGMLIRRLESDPRRDLSKNIQQGST 281
           A                    G E+    + + V A M +R   +D    +      G  
Sbjct: 215 AG------------LVGATVLGLEVR---YKIAVGADMNLRHFNADQTMMM------GDA 253

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
                   +     +++PP+G+    + +++   +++     F    P  
Sbjct: 254 CKVP-LVDESVDAVIADPPYGRSARIEGESLHHLYEHSFAEMFRVLKPGK 302


>gi|281423758|ref|ZP_06254671.1| putative DNA methylase [Prevotella oris F0302]
 gi|281402160|gb|EFB32991.1| putative DNA methylase [Prevotella oris F0302]
          Length = 1556

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 80/257 (31%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++      +L D               + +P+ G G F+    + V        
Sbjct: 104 AFYTPKEITDTLADMLAD--------YSVRPARMLEPSAGVGVFV----DSVLRHSPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRL--ESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +    +   ++L   T        ++R L  +   R    + I+              F 
Sbjct: 152 V----MAFEKDLLTGT--------ILRHLYPDHKMRTCGFEKIE--------KPFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D +      ++   GR                 +   K       G
Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDTVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + V LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFRQANLVSAVRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SN--RKTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKHLNKKEMSQDERLMT 311


>gi|219851555|ref|YP_002465987.1| hypothetical protein Mpal_0910 [Methanosphaerula palustris E1-9c]
 gi|219545814|gb|ACL16264.1| hypothetical protein Mpal_0910 [Methanosphaerula palustris E1-9c]
          Length = 49

 Score = 41.9 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 640 FFYQYQPSRKLQDIDAELKGVEAQIATLLEEMA 672
           +FY+    R   +I   ++ +E +   LL ++ 
Sbjct: 16  YFYKSTLLRTQDEICVNIQNLEKETEGLLNQIV 48


>gi|326445416|ref|ZP_08220150.1| hypothetical protein SclaA2_30317 [Streptomyces clavuligerus ATCC
           27064]
          Length = 191

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTDAMNHVA 228
                 ++ TP D+  L + +L +P+     + P        +PT GTGG    +   + 
Sbjct: 40  SRRSLGEYHTPPDISRLISEVLANPNRGSGDQPPHSPGEWALEPTAGTGGLFRTSAQVLR 99

Query: 229 DCGSH 233
             G  
Sbjct: 100 RNGED 104


>gi|308182626|ref|YP_003926753.1| type II adenine specific methyltransferase [Helicobacter pylori
           PeCan4]
 gi|308064811|gb|ADO06703.1| type II adenine specific methyltransferase [Helicobacter pylori
           PeCan4]
          Length = 545

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LEMLENSSDLEKLGSHYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                T  DP  G+G F+  A+              +   +G + +    A+       +
Sbjct: 136 -----TFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R++     D   NI Q   LS       +F    +NPP+GKK+ +++    +  K     
Sbjct: 177 RIKERYHLDC-PNIMQKDFLSLKHTP--QFDCIFTNPPWGKKYNQNQK---ENFKQKFN- 229

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
                L +  D + LF +   N L+   + G
Sbjct: 230 -----LSQSLDSASLFFIASVNCLKENAHLG 255


>gi|288926365|ref|ZP_06420288.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
 gi|288336892|gb|EFC75255.1| superfamily II DNA and RNA helicase [Prevotella buccae D17]
          Length = 1096

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 77/242 (31%), Gaps = 40/242 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   IR   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISDALASTNLQIRRCLDPSMGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + ++    +   ++                  ++    SN PFG     D  
Sbjct: 166 LHPYGKGNIFVQNEPFEAIGEIED--------------KDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ LF     T++ + L +L  +  +E    +  Q +
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSSLFSDNAGTDVGSDLIVLQKQTGKEISKGIEQQFV 315

Query: 426 NA 427
             
Sbjct: 316 ET 317


>gi|188993950|ref|YP_001928202.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277]
 gi|188593630|dbj|BAG32605.1| putative DNA methylase [Porphyromonas gingivalis ATCC 33277]
          Length = 1828

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 86/269 (31%), Gaps = 50/269 (18%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
             S  +     F TP  VV            A  +E+  + + + DP+ G G F   + +
Sbjct: 95  MQSLKNSVMTAFYTPAPVVR--------EIAASLREAGIVPQRILDPSAGMGEF-IRSFD 145

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
            +A  G         +  GQ L             +   +    R   + I+        
Sbjct: 146 GIAAEGHTTFGFEKDILTGQMLS-----------ALHPEDKIRIR-GFEEIES------- 186

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
              G  F    SN PFG     D        K  E  R    + ++S  +  F+     K
Sbjct: 187 -KLGGYFDVVSSNIPFGDVAVFDPVFS----KTDEPAR---KVARMSLHNYFFI-----K 233

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTN 402
                  GG  A + S   +           +R WL+ +  + + V LP +LF     T 
Sbjct: 234 GVDMLREGGVLAFITSQGVMNAPTNEP----VREWLMNHTRLISAVRLPNNLFSENAGTE 289

Query: 403 IATYLWILSN--RKTEERRGKVQLINATD 429
           + + L +L     KT     + + I +  
Sbjct: 290 VGSDLIVLQKQSNKTSLTEEEKRFIKSEK 318


>gi|126668538|ref|ZP_01739493.1| helicase domain protein [Marinobacter sp. ELB17]
 gi|126627049|gb|EAZ97691.1| helicase domain protein [Marinobacter sp. ELB17]
          Length = 1658

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 57/445 (12%), Positives = 119/445 (26%), Gaps = 90/445 (20%)

Query: 51   TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
            T   + E       +    ++  +   ++ +N    ++  L      +N    I   +D 
Sbjct: 781  TDDEIIEMLAQHLITKPVFDALFEGYNFTEHNPMSLAMQALTEQLKGHN----IDKEADT 836

Query: 111  AKAIFEDFDFSSTIARLEKAG--LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
             ++ +E     +      +    ++ ++   F        T                   
Sbjct: 837  LRSFYESVKMRAQGVESAEGKQRIIVELYDKFFKNAFPRMT------------------- 877

Query: 169  EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMIRTLYDPTCGTGGFLTD----- 222
               +      TP +VV      + D   + F  S       + D   GTG F        
Sbjct: 878  ---DRLGIVYTPIEVVDFILHSVEDVMRSEFNSSLAEPNVHILDGFTGTGTFPVRLLQSG 934

Query: 223  -------AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK- 274
                   A  +  +  ++  +          +E   H +      +   E   +      
Sbjct: 935  IIPKDKLAHKYKHEIHANEIVLLAYYIAAINIEATYHGI--MNNNVAGDEYTDQIFEVPY 992

Query: 275  ----NIQQGSTL----SKD--------------LFTGKRFHYCLSNPPFGKKWEKDKDAV 312
                 I    T     S+D                        + NPP+      + DA 
Sbjct: 993  EPFTGICLTDTFQMYESEDMIDELLEENSSRRKHQKNLDIRVIVGNPPYSAGQTSENDAN 1052

Query: 313  EKEHKNGELGRFGPGLPKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFN 367
            +    +    R G      S+ ++   L+  ++             G  A V ++S L +
Sbjct: 1053 QNVKYSNLDERIGSTYAHYSNATLQKNLYDSYIRAIRWASDRVGEQGVVAYVTNASFL-D 1111

Query: 368  GRAGSGESEIRRWLLENDLIEAIVALPTD--------------LF-FRTNIATYLWILSN 412
            G +  G   +RR L+E      +  L  +              +F   +     + IL  
Sbjct: 1112 GNSMDG---LRRCLVEEFSSLYLFHLRGNQRTSGERSRKEGGKIFGSGSRAPIAISILVK 1168

Query: 413  RKTEERRGKVQLINATDLWTSIRNE 437
                   GK+   +  D  +  +  
Sbjct: 1169 NPQSSEHGKIYFHDIGDYLSREKKL 1193


>gi|188996288|ref|YP_001930539.1| methyltransferase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931355|gb|ACD65985.1| methyltransferase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 479

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 52/368 (14%), Positives = 100/368 (27%), Gaps = 48/368 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  T  DV       +         +         D   G G  +   + ++ +  
Sbjct: 21  RLFGQHFTSEDV---FNEFIFPEIKDKLYD-----YKFVDLFGGEGNLILPILKNIPEDK 72

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL---FT 288
                   +     + E    A+  A          P+   S+NI+   TL         
Sbjct: 73  RIEYFRKHIFLFDIQSEIVEKAIKKAE-----DYGIPKEIASENIKCLDTLKNYPEYLLN 127

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
                Y ++NPP+       K    +++     G              L+ + L N L  
Sbjct: 128 DDLPVYHITNPPYLYIGYIKKHKETQKYLQYFQGDNKG-------YQDLYQIALINDLNH 180

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLW 408
                 +   V+ ++ +F+    SG ++IR    +   I   V     +F  T I   ++
Sbjct: 181 KIQ---KMIYVIPTNFIFSS---SGANKIRDMFFKVYRINKAVIFEKKIFENTGINVGIF 234

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRML 468
               +        V       L  S  N  K+  I+      +  + +            
Sbjct: 235 FFERKDKISIHDVVF----EGLKISDTNIKKRTYILTPKNHYRAGNEFEDFVE------- 283

Query: 469 DYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYP 528
                   R +   PL + F L    +   + + +   +     S      K +      
Sbjct: 284 --------RHRAKNPLSVKFYLTHDEVQSNKGNKSIIVVDANDFSKIGYTKKEIKVNEQL 335

Query: 529 YGWAESFV 536
           Y   ES +
Sbjct: 336 YNKIESNI 343


>gi|317481285|ref|ZP_07940356.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36]
 gi|316902618|gb|EFV24501.1| hypothetical protein HMPREF1007_03475 [Bacteroides sp. 4_1_36]
          Length = 1905

 Score = 41.9 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 53/264 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L                 + +P+ G G F+   +++        K
Sbjct: 104 AFYTPPEITDAIADVLHGHGI--------RPDRVLEPSAGVGAFVDAVLDY--------K 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++   +             ++  R+      D    +Q    + K       F   
Sbjct: 148 PDADIMAFEK------------DLMTGRILKHLHPDQKVRVQGFEKIEKPF--TDYFDLV 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D    + E               I +    FL     K       GG 
Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSHDPARRSAAKTIHN--YFFL-----KSLDTVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++++     +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPSNAPIREYMMKHANPVGVARLPNNLFTDNAGTEVGSDLIILQK 297

Query: 413 RKTEERRGKVQLINATDLWTSIRN 436
              ++R     L +  +++     
Sbjct: 298 NSGKKRE----LYDYEEMFIQTGK 317


>gi|124514555|gb|EAY56068.1| putative modification methylase [Leptospirillum rubarum]
          Length = 575

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 62/206 (30%), Gaps = 29/206 (14%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +F +   E      T R+VV     L+           P     L +P+ G G FL  A+
Sbjct: 27  QFANAGIEARGAIFTRREVVEFILDLVGY-----TANRPLHKIRLLEPSFGGGDFLLSAI 81

Query: 225 NHVADCGSHHKIP----------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +         P            +  H         AV           +D  R +++
Sbjct: 82  ERLLKAWMEAGRPEPVKSLSDCIRAVELHHITFATTRAAVAKTLERAGIPSNDAERLVTE 141

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPGLPKI 331
            +  G  L   L     F   + NPP+  + E   D++  E++        R    +P  
Sbjct: 142 WLIYGDFLLVPL--EGLFDVVVGNPPY-VRQELIPDSLMTEYRARYATIYDRADLYVP-- 196

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAA 357
                 F+    + L    + G   A
Sbjct: 197 ------FIERSLSSLTKSGHLGFICA 216


>gi|315042682|ref|XP_003170717.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma gypseum
           CBS 118893]
 gi|311344506|gb|EFR03709.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Arthroderma gypseum
           CBS 118893]
          Length = 454

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 88/271 (32%), Gaps = 38/271 (14%)

Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSG---IELHPDTVPDRVMSNIYEHLIRRFG 167
            I E F F +     ++  A   + + + FS       +P T  + V++ +Y   + R+ 
Sbjct: 117 EIIESFSFLAFDGPIKMVDADEEFCVFEEFSHQLAPSGNPKTHTEPVLNRVY---LGRWV 173

Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +E      +      R  +   T        +         +  YDP  GTG FL  A +
Sbjct: 174 TEGGRTEINTYNLKKRKYISTTTMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             A               G+E      A          +  + ++    + +   T + D
Sbjct: 234 FGAITCGSD--IDGRSFRGKE------ATSKTD---TGVIGNFKQYGLLS-KYLDTFTSD 281

Query: 286 LFTG-----KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF-- 338
           L        + F   + +PP+G +        + E + GEL  F  G+P     + +F  
Sbjct: 282 LTNTPLRDIRMFDGIICDPPYGVREGLRVLGHKDESRKGELMMFQ-GVPSFKRENYIFPK 340

Query: 339 --------LMHLANKLELPPNGGGRAAIVLS 361
                   L  + +         GR ++ + 
Sbjct: 341 RPYPFNAMLDDILDFAAHTLVDNGRISLWMP 371


>gi|260912381|ref|ZP_05918929.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633504|gb|EEX51646.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 2081

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 102/361 (28%), Gaps = 43/361 (11%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   IR   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISDALAFTNLQIRRCLDPSMGMGAF---AEIFARQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + +R    +   +L                  ++    SN PFG     D  
Sbjct: 166 LHPYGKGNIFVRNEPFEAIGELE--------------NKDKYDLITSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSRGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKV--QLI 425
                 IRR+L++N  + + + LP+ +F     T++ + L IL  +  +E    +  Q +
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSGMFSDNAGTDVGSDLIILQKQTGKEISEGIEQQFV 315

Query: 426 NATDL-WTSIRNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYRRIKVLR 482
               +      +   K   +     + I    I   R  G          + +       
Sbjct: 316 ETVSVPKEEGSSVVFKHNSLFVGDWKDISHRTIATERILGTDPYGRPAWEYRFTGGIEEL 375

Query: 483 PLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKS 542
              +   L      R++  +    +         +  K + +        E   K   + 
Sbjct: 376 AESLRTQLSLEMGQRIDRKLYETGIPMTEVEREAEAEKLLRKLGITISREEDTEKTKTED 435

Query: 543 N 543
            
Sbjct: 436 K 436


>gi|116494532|ref|YP_806266.1| adenine-specific DNA methylase [Lactobacillus casei ATCC 334]
 gi|116104682|gb|ABJ69824.1| Adenine-specific DNA methylase [Lactobacillus casei ATCC 334]
          Length = 336

 Score = 41.9 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 100/333 (30%), Gaps = 50/333 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ++     +E+     S N             +   E    L  +          P+
Sbjct: 22  QQLKTSFIAAVIEAGEDLASGNVMQ-------EDGVPNDEAKKKLTALFDQIKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT ++      +F +       
Sbjct: 75  -----EIRQAIQLVLVKAIKVDGIEPNKQVTPDAMASLATFMVT-----VFAQHLPKKMQ 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   GTG  L   MN + +          +  +G + +    AV      +++L+ D 
Sbjct: 125 VADLAVGTGNLLFGVMNQLHNA-----RQVAVKGYGIDNDETLLAVAGMSSTLQQLDVDL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                        L   LF        +S+ P G         V++  K  E       +
Sbjct: 180 F--------HQDALDNLLFKD--IDVVVSDLPVG------YYPVDERAKQFET----AAV 219

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
              S    L +      L+      G   +    S +F+    +G +    WL ++   +
Sbjct: 220 KGHSYAHHLLIEQSMRVLKP-----GGLGLFYVPSQVFSSEEAAGLTA---WLAKSTYFQ 271

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
            ++ LP D F        L +L     + +R K
Sbjct: 272 GLLNLPEDFFADQKAEKSLLVLQKPSPDVKRAK 304


>gi|289434862|ref|YP_003464734.1| N-6 DNA methylase domain protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171106|emb|CBH27648.1| N-6 DNA methylase domain protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 336

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 40/256 (15%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +  +   LL                ++ DP CGT   LT  +N +       K
Sbjct: 95  HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 143

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +   G +++    ++      +   +   ++     +     L+  L         
Sbjct: 144 DGVEIHASGVDVDDLLISLA-----LVGADLQRQKMT---LLHQDGLANLLVDPVDVVVS 195

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
                F   +  D++A   E    E   F            LF+       +     GG 
Sbjct: 196 DLPVGF---YPDDENAKSFELCREEGHSF---------AHFLFIEQGMRYTKP----GGY 239

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              ++  +          +    +++ +N  IE I+ LP  LF        + IL     
Sbjct: 240 LFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILRKAAE 295

Query: 416 E-ERRGKVQLINATDL 430
             +   +V L N + L
Sbjct: 296 NVKPPKEVLLANLSSL 311


>gi|229827047|ref|ZP_04453116.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
           49176]
 gi|229788665|gb|EEP24779.1| hypothetical protein GCWU000182_02431 [Abiotrophia defectiva ATCC
           49176]
          Length = 2218

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 66/248 (26%), Gaps = 59/248 (23%)

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F TP+ V+     +                  + +P+ G G F+ +  N +         
Sbjct: 563 FYTPKPVIDGMYKI--------LSGMGLRKGNVLEPSMGIGNFIGNLPNEMQGVK----- 609

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 +G E +  +  +                    NI Q     +  F+   F   +
Sbjct: 610 -----FYGVEQDSISGRIAK------------LLYPESNI-QIKGFEETTFSNNFFDASI 651

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
            N PFG     D+D         +                        K       GG  
Sbjct: 652 GNVPFGDFKLNDRDYDRNNFLIHDY--------------------FFAKSIDKVRNGGII 691

Query: 357 AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           A +       +G     +  +R+++         + LP + F     T + + +     R
Sbjct: 692 AFIT-----SSGTMDKKDESVRKYIAARAEFLGAIRLPNNTFKGMAGTEVTSDIIFFKKR 746

Query: 414 KTEERRGK 421
            +   R +
Sbjct: 747 DSVMERDE 754


>gi|308063317|gb|ADO05204.1| type II R-M system methyltransferase [Helicobacter pylori Sat464]
          Length = 545

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++  +          RF  
Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKEI-------FKQRFN- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|300933402|ref|ZP_07148658.1| superfamily II DNA/RNA helicase [Corynebacterium resistens DSM 45100]
          Length = 1147

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 53/182 (29%), Gaps = 18/182 (9%)

Query: 114  IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
            + E  D ++    LEK    Y         E++  +   +V+  +YE   ++   + +E 
Sbjct: 917  VLEKEDLNTETESLEK---FYDSV-RVRASEVNSASGKQQVIKELYERFFQKAFRKQAEA 972

Query: 174  AEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTD---------- 222
                 TP ++V        D       K        + DP  GT  F             
Sbjct: 973  LGIVYTPVEIVDFILRAADDVSRKHFGKGLTDEGVCILDPFAGTSTFTVRLLQSGLIRPE 1032

Query: 223  --AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
              A  +  +  +   +          +   T+    A    R  E +P      NI    
Sbjct: 1033 DLARKYANEILATEIMLLAYYVSAVNI-ETTYNALRAEEAKRNGEQEPEYVPFSNIALAD 1091

Query: 281  TL 282
            T 
Sbjct: 1092 TF 1093


>gi|299141731|ref|ZP_07034867.1| helicase [Prevotella oris C735]
 gi|298577067|gb|EFI48937.1| helicase [Prevotella oris C735]
          Length = 689

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELEG--------------KDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|210062468|ref|YP_002300485.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|134270010|emb|CAL91883.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 242

 Score = 41.9 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 32/239 (13%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSE-YSLSTLGSTNTRNNLESYIASFSDNA 111
             VRE +     + I    F       FY+ S  Y  + L     +          +D  
Sbjct: 22  DTVREFFNCVSYTMIMNSLFQLERRELFYSGSNIYGFNQL---AIQAGFIEKSIMLTDRH 78

Query: 112 KAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
           K   E+  F +      ++ A L+    +     ++      D        +L  +    
Sbjct: 79  KFSIEE-KFYNQFDTEIIDTANLISLEIQKQPLTDVFNRIFEDC-------YLTGK---- 126

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             E    F+TP  +    +  +    D        +   + D   GTG  L   +  +  
Sbjct: 127 KGEWLGQFLTPNRLAEAISRFVGWEKD--------IKYNIGDCCAGTGSLLFPLLREIHS 178

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVA----GMLIRRLESDPRRDLSKN-IQQGSTLS 283
              +  +  I + +  E++P    + +A     M    L+         N I +  T+S
Sbjct: 179 KEGYEGVQKIELLY-NEIDPLMAQLFMAQILTNMTYHNLDFKSLHVYIGNAITEYDTVS 236


>gi|319945759|ref|ZP_08020010.1| adenine-specific methyltransferase [Streptococcus australis ATCC
           700641]
 gi|319748119|gb|EFW00362.1| adenine-specific methyltransferase [Streptococcus australis ATCC
           700641]
          Length = 321

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 112/387 (28%), Gaps = 77/387 (19%)

Query: 64  GSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSST 123
             +++ E   K  GY   NT           + + N    +   +               
Sbjct: 2   EESMNFEKIEKAYGYLLENTQT------IQNDLQTNFYDALVEQNA--------IYLDGQ 47

Query: 124 IA-RL--EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
               L  E    L  +  N +  E              +++L+ +        A    TP
Sbjct: 48  TELTLVKENNQRLKDL--NLNKEEWRRS----------FQYLLMKAAQTEPLQANHQFTP 95

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +  L   L+          S  +   + +   GTG      MN              L
Sbjct: 96  DGIGFLLVFLV-----DQLASSDQV--DVLEMGSGTGNLAQTLMN---------NCQRSL 139

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
              G E++     +  +                 N  QG  +       K     +S+ P
Sbjct: 140 DYLGLEIDDLLIDLAAS--------MAEVMKADVNFAQGDAIRP--QVLKESDVIISDLP 189

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
            G               +    R+    P+    +    + +   L+    GG   AI L
Sbjct: 190 VGYYP-----------DDAIASRYQVASPQGH--TYAHHLLIEQSLKYLKPGG--IAIFL 234

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           + + L           +++W+ ++  + A+V LP +LF   N+A  +++L  ++  E + 
Sbjct: 235 APNDLLTSEQSP---LLKKWMQDHAQVLAMVTLPENLFRSANLAKTIFVLRKQEEAEVQP 291

Query: 421 KVQ----LINATDLWTSIRNEGKKRRI 443
            V     L +  D+     +     + 
Sbjct: 292 FVYPLTDLQDQEDVMKFRESFQNWNKE 318


>gi|326402592|ref|YP_004282673.1| hypothetical protein ACMV_04440 [Acidiphilium multivorum AIU301]
 gi|325049453|dbj|BAJ79791.1| hypothetical protein ACMV_04440 [Acidiphilium multivorum AIU301]
          Length = 640

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 63/239 (26%), Gaps = 62/239 (25%)

Query: 38  FTLLRRLECA-LEPT---RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGS 93
           F  L+ LE   L      +      +  F G    +      AGY  Y  S +       
Sbjct: 92  FVALKMLEARQLVQECISKGDQSSGFKEFCGMAPGVALLPDAAGYRLYVESLFD------ 145

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                        FS   K +F+  D +S +    K      +    +  +L      D 
Sbjct: 146 ------------EFSTEIKVLFDRRDAASVLW--PKRQTFEALLALLNAPDLSGVWDEDE 191

Query: 154 VMSNIYEHL-----IRRFGSEVSEGAE--------DFMTPRDVVHLAT------------ 188
            +  +Y+        ++   E               F TPR VV                
Sbjct: 192 TIGWVYQFFNSGEERKKMRDESQAPRNSRELAVRNQFFTPRYVVQFLVDNTLGRLWLEMH 251

Query: 189 ----------ALLLDPDDALFKESPGMIRT---LYDPTCGTGGFLTDAMNHVADCGSHH 234
                       L+   D   +  P        + DP CG+G FL  + + +       
Sbjct: 252 GVQSRLTDLCEYLVRSADDTVQVRPKKDPRDLRILDPACGSGHFLLYSFDLLLAIYEEA 310


>gi|225017370|ref|ZP_03706562.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
 gi|224949780|gb|EEG30989.1| hypothetical protein CLOSTMETH_01296 [Clostridium methylpentosum DSM
            5476]
          Length = 2434

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 64/253 (25%), Gaps = 58/253 (22%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             + + ++     + T  D++      L       F    G  R + DP  GTG F +   
Sbjct: 887  EYKAAMNSTITAYYTEPDLIRHIYRAL-----ERFGFEGGPDRKILDPGMGTGNFYSVLP 941

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                               G EL+  T  +                D   +I        
Sbjct: 942  E----------QFQGSKLFGVELDSITGRIAK----------QLYPDADISIMG---YEA 978

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              F    F   L N PF                     R+    P I D    F+     
Sbjct: 979  TKFEDNSFDVILGNIPFNSV-------------KIHDRRYNDLNPYIHD--YFFI----- 1018

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR-WLLENDLIEAIVALPTDLF---FR 400
            K       GG  A + S   +        E   RR   +        + LP   F     
Sbjct: 1019 KSLDLAKPGGIIAFITSKGIMDRKDESLREYIARRAEFI------GAIRLPNTAFKPLAG 1072

Query: 401  TNIATYLWILSNR 413
            T++   +  L  R
Sbjct: 1073 TDVTADVVFLKKR 1085


>gi|262118142|ref|YP_003275912.1| hypothetical protein Gbro_4906 [Gordonia bronchialis DSM 43247]
 gi|262088052|gb|ACY24019.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247]
          Length = 941

 Score = 41.9 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 54/216 (25%), Gaps = 45/216 (20%)

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL---- 240
            L              +         DP CG+G FL  A   + +  +   +        
Sbjct: 366 RLIANKSTSAAQLAAFQDELASNIYVDPACGSGNFLNVAYAKLREIETDIIVERRRRLGE 425

Query: 241 ----------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLS----------- 273
                             HG E+      +    M +   +++     +           
Sbjct: 426 TGMSLDATLEQKLTIDRFHGFEINWWPAKIAETAMFLVDHQANLNLAEAIGQAPERLPIT 485

Query: 274 --KNIQQGSTLSKDLFTGKRF----HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
              +I     L  D            +   NPPF     +  D  E+        R   G
Sbjct: 486 ITAHITHADALDLDWKAQLPAVAGQTFVFGNPPFLGHATRTDDQAEQL-------RRAWG 538

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
              IS    +   H    L+L     G  A V ++S
Sbjct: 539 TRDISRLDYVTAWHAKT-LDLLAQRPGAFAFVTTNS 573


>gi|315033300|gb|EFT45232.1| N-6 DNA Methylase [Enterococcus faecalis TX0017]
          Length = 335

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 104/341 (30%), Gaps = 56/341 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDK-DAVEKEHKNGELGRFGPGLPKISDGS 335
               +D             LS+ P G     ++        + G            S   
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGYYPNDERGKGFAAAAEEGH-----------SYAH 225

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            L +      ++        A   L   P         E   + WL +N  ++ ++ LP 
Sbjct: 226 HLLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPD 277

Query: 396 DLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           +LF    +  + L + +     E+  +V L     L    +
Sbjct: 278 ELFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|301299759|ref|ZP_07206004.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852639|gb|EFK80278.1| conserved hypothetical protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 644

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 46/196 (23%), Gaps = 48/196 (24%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPG------------MIRTLYDPT 213
             +         T    +      L   D    F+++ G                  DP 
Sbjct: 33  SEDKRSHLGMHYTSVPNIMKVINPLFLDDLHEEFEKAKGNETKLNNLLERMRKMKFMDPA 92

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELEPETHAVCVAGM 259
           CG+G FL      +                             +G E+E     V    +
Sbjct: 93  CGSGNFLIITYKELRRLEMDIFEELGKINNSTMYVPTIDLGQFYGIEIEDFAVDVTRLSL 152

Query: 260 LIRRLESDPR--------------RDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPP 300
            I   + +                     +I+ G+ L  D             Y   NPP
Sbjct: 153 YIADHQMNLELKRRYGDYLRETLPLHKVGDIRCGNALRLDWNEILPHEKDDEVYLFGNPP 212

Query: 301 F--GKKWEKDKDAVEK 314
           +  GK   K+     K
Sbjct: 213 YKGGKSQPKEYKKYTK 228


>gi|257790626|ref|YP_003181232.1| SNF2-like protein [Eggerthella lenta DSM 2243]
 gi|257474523|gb|ACV54843.1| SNF2-related protein [Eggerthella lenta DSM 2243]
          Length = 2005

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 69/252 (27%), Gaps = 62/252 (24%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            F S+       F TP  V+      L    +A           + +P CGTG F+  A 
Sbjct: 76  EFASQRHTVLTAFYTPAPVIGAIYDAL---REAGIGRGDNP-AAILEPGCGTGNFMRLAP 131

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                          L  HG EL+P +  +  A               +  +++      
Sbjct: 132 -----------ADLALDFHGVELDPISARIAQA-------LCPKAHITAAGLEECRV--- 170

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +   F   + N P+    + D   +                            +   
Sbjct: 171 ---SPASFDAAIGNVPYSGDIKIDGMPIHD--------------------------YFIR 201

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
           K       GG  A++ S   L            RR + E   +   V LP + F     T
Sbjct: 202 KSIESVRPGGIVAVLTSRYTLDKNSTA-----TRRAMAEKAELLGAVRLPAETFRRQAGT 256

Query: 402 NIATYLWILSNR 413
              + + +L  R
Sbjct: 257 EALSDILLLRRR 268


>gi|302502553|ref|XP_003013247.1| hypothetical protein ARB_00432 [Arthroderma benhamiae CBS 112371]
 gi|291176810|gb|EFE32607.1| hypothetical protein ARB_00432 [Arthroderma benhamiae CBS 112371]
          Length = 421

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFG 167
            I E F F +     ++  A   + + + F+       +P T  + V+  IY   + R+ 
Sbjct: 117 EIIESFSFLAFEGPIKMVDADEKFCVFEEFAHQLASSGNPKTHTEPVLKRIY---LGRWV 173

Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +E      +      R  +   +        +         +  YDP  GTG FL  A +
Sbjct: 174 TEGGRAEINTYNLKKRKYISTTSMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             A                     ET  +         L S          +   T + D
Sbjct: 234 FGAVTCGSDIDGRSFRGKEATSNTETGVIA--NFKQYGLLS----------RFLDTFTSD 281

Query: 286 LF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
           L      + + F   + +PP+G +        + + + GEL  F  G+P     + +F
Sbjct: 282 LTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMFQ-GVPSYKRENYIF 338


>gi|317475388|ref|ZP_07934652.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316908416|gb|EFV30106.1| hypothetical protein HMPREF1016_01634 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1937

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++   ++L   T        ++R L  D +       +     +        F   
Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D +      K+G  GR                 +   K       GG 
Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 --RKTEERRGKVQLI 425
              K E  + +  + 
Sbjct: 297 KLNKKEMSQDERLMT 311


>gi|288925574|ref|ZP_06419506.1| DNA methylase [Prevotella buccae D17]
 gi|288337512|gb|EFC75866.1| DNA methylase [Prevotella buccae D17]
          Length = 1830

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 80/253 (31%), Gaps = 48/253 (18%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
               S  +     F TP  VV            A  +E+  + + + DP+ G G F   +
Sbjct: 93  SYMQSLKNSVMTAFYTPAPVVQ--------EIAASLREAGIVPKRILDPSAGMGEF-IRS 143

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + +A            +  GQ L             +   +    R   + I+      
Sbjct: 144 FDTIAAEEHTTFGFEKDILTGQMLS-----------ALHPEDKIRIR-GFEEIES----- 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                G  F    SN PFG     D        K  E  R    + ++S  +  F+    
Sbjct: 187 ---KLGGYFDVVSSNIPFGDVAVFDPVFS----KTDEPAR---KIARMSLHNYFFV---- 232

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
            K       GG  A + S   +           +R WL+ +  + + V LP +LF     
Sbjct: 233 -KGVDMLREGGVLAFITSQGVMNAPTNEP----VREWLMSHTRLISAVRLPNNLFSENAG 287

Query: 401 TNIATYLWILSNR 413
           T + + L +L  +
Sbjct: 288 TEVGSDLIVLQKQ 300


>gi|257084816|ref|ZP_05579177.1| adenine-specific DNA methylase [Enterococcus faecalis Fly1]
 gi|256992846|gb|EEU80148.1| adenine-specific DNA methylase [Enterococcus faecalis Fly1]
          Length = 335

 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 102/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+                 + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTDKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPIGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|198454454|ref|XP_001359596.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
 gi|198132801|gb|EAL28746.2| GA10534 [Drosophila pseudoobscura pseudoobscura]
          Length = 460

 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 13/203 (6%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     +  +  L          ++DP  GTG  L
Sbjct: 152 HLIKDLSLKKRKFIGNTSMDAQLSLLMANQAMVREGDL----------VFDPFVGTGSLL 201

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 202 VSAAKFGGYVLGADIDYMMVHAQCRPSRISQRVRERDESIRANLKQYGCADRYMDVLVAD 261

Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             S         F   +++PP+G +   +K   +K  K           P  S  S+  L
Sbjct: 262 -FSNPLWHPRLLFDSIITDPPYGIREATEKVETKKSAKEDTRSEDMVHYPSTSHYSLQSL 320

Query: 340 -MHLANKLELPPNGGGRAAIVLS 361
              L          GGR    L 
Sbjct: 321 YCDLLEFSAKHLKLGGRLVCWLP 343


>gi|261416833|ref|YP_003250516.1| putative type II restriction enzyme (methylase subunit)
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261373289|gb|ACX76034.1| putative type II restriction enzyme (methylase subunit)
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327703|gb|ADL26904.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 882

 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 43/194 (22%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   +  ++++ +I     E         T    +      L   D     ++ G   
Sbjct: 274 KDINPDIFGSMFQTVID---EEQRGDLGQHYTSVPNIMKVIEPLFLNDLRKEFDAAGKSV 330

Query: 208 T-------------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI---------LVPHGQ 245
           T             ++DP CG+G FL  A   +        +               +G 
Sbjct: 331 TKLKNLLLRIRNIQIFDPACGSGNFLIIAYKELRKLEMDILLKMQEFGLTGIHLNHFYGI 390

Query: 246 ELEPETHAVCVAGMLI--RRLESDPRR-----------DLSKNIQQGSTLSKDL-----F 287
           E++          + +   ++  +                + +I   +  + D       
Sbjct: 391 EIDDFACETAKLSLWLAEHQMNVEFFSKTGTICPTLPLKEAGHIVCDNACNIDWNNVCPN 450

Query: 288 TGKRFHYCLSNPPF 301
            G    Y L NPP+
Sbjct: 451 NGNDEIYVLGNPPY 464


>gi|225620239|ref|YP_002721496.1| hypothetical protein BHWA1_01313 [Brachyspira hyodysenteriae WA1]
 gi|225215058|gb|ACN83792.1| hypothetical protein BHWA1_01313 [Brachyspira hyodysenteriae WA1]
          Length = 428

 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 66/180 (36%), Gaps = 19/180 (10%)

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           K++F G  F   + NPP+       ++    E +      F     K +DG         
Sbjct: 22  KNIFKGGGFDVVIGNPPY------VRNRELDEKQKMYFNSFY----KSADGQYDLYQLFY 71

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTN 402
            K             + S+         S   ++R ++L+N +I+ I+ +   ++F + +
Sbjct: 72  EKGINILKEKSILGYITSNKF----TIASYGKKLREYILDNCIIKQIIDVSMINVFKKVS 127

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNE---GKKRRIINDDQRRQILDIYVSR 459
              Y+ IL   K E     ++          ++N+    +++  ++D+ +  IL      
Sbjct: 128 TYPYIIILEKNK-ENIDNIIKYKKVLTEEELLKNKLECIEQKSYLDDENKNFILRKIPDF 186


>gi|15611497|ref|NP_223148.1| type II DNA modification (methyltransferase [Helicobacter pylori
           J99]
 gi|4154967|gb|AAD06011.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
           pylori J99]
          Length = 545

 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE   +   +        + TP  +V     L   P D    ++
Sbjct: 82  LEMLENSSDLENLGSYYE---KELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTTQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP  G+G F+  A+              +   +G + +    A+    +   
Sbjct: 136 -----IFCDPAVGSGNFVMHALKL---------GFKVENIYGYDTDAFAVALTKKRI--- 178

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
               +  R    NI Q   LS  L    +F    +NPP+GKK+ +++    +  K     
Sbjct: 179 ---KERYRLDCPNIMQKDFLS--LKHAPQFDCIFTNPPWGKKYNQNQK---ENFKQQFN- 229

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
                L +  D + LF M   N L+     G
Sbjct: 230 -----LHQSLDSASLFFMASLNCLKENAYLG 255


>gi|237718319|ref|ZP_04548800.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452503|gb|EEO58294.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1056

 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|237726538|ref|ZP_04557019.1| DNA methylase BmhA [Bacteroides sp. D4]
 gi|229435064|gb|EEO45141.1| DNA methylase BmhA [Bacteroides dorei 5_1_36/D4]
          Length = 1062

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|218261238|ref|ZP_03476114.1| hypothetical protein PRABACTJOHN_01778 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224168|gb|EEC96818.1| hypothetical protein PRABACTJOHN_01778 [Parabacteroides johnsonii
           DSM 18315]
          Length = 852

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|197294796|ref|YP_001799337.1| Putative N6 adenine-specific DNA methyltransferase, probably
           truncated [Candidatus Phytoplasma australiense]
 gi|171854123|emb|CAM12112.1| Putative N6 adenine-specific DNA methyltransferase, probably
           truncated [Candidatus Phytoplasma australiense]
          Length = 209

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 76/256 (29%), Gaps = 62/256 (24%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  V      +L                 ++DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKSTIYTPSWVSQFLYDILSPQIKRGL---------IFDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  +     + ++ +                 
Sbjct: 52  LLPWKE------------KGFDVLGVDIEKTSF----SNLIHKNFLE------------- 82

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             LS+     ++    ++NPPF   ++      +   K    GR  P LP+      L+L
Sbjct: 83  --LSQKDLKKQKISLVITNPPFNLDFK-----TKSYVKEKYGGR--PLLPE------LWL 127

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPTDL 397
             +               IVL +   F     S  S+  +  +  +   I +I++LP D+
Sbjct: 128 KKIIEIFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFVNQEYPEISSIISLPKDV 180

Query: 398 FFRTNIATYLWILSNR 413
           F      + + I +  
Sbjct: 181 FENVVFHSEILIFNVN 196


>gi|1536938|emb|CAA67873.1| methylase [Rhizobium leguminosarum]
          Length = 600

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
           P       +S  Y  ++ +   ++      F TP  +      L  +             
Sbjct: 104 PIESAAFQLSACYTAMLPQ---DIRSEWGAFYTPPALTARLMELAQEAGID------WRA 154

Query: 207 RTLYDPTCGTGGFLTDAMNHVADC-----GSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
             + DP CG G FL      +                     G +++P    +    + I
Sbjct: 155 ARVLDPACGGGAFLLPVALRMQQALQALSPGELLDHFAGHLSGFDIDPFAAQLTQTWLEI 214

Query: 262 --RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
               L     R     I+  ++L + + + KRF   + NPP+G+
Sbjct: 215 AFASLSMQTGRPFPAVIRVCNSLEQPV-SSKRFDLVIGNPPYGR 257


>gi|329568743|gb|EGG50543.1| N-6 DNA Methylase [Enterococcus faecalis TX1467]
          Length = 335

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPVGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|242022009|ref|XP_002431434.1| conserved hypothetical protein [Pediculus humanus corporis]
 gi|212516722|gb|EEB18696.1| conserved hypothetical protein [Pediculus humanus corporis]
          Length = 466

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 77/266 (28%), Gaps = 36/266 (13%)

Query: 111 AKAIFEDFDFSSTIA-----RLEKAGLLYKICKNFS-GIELHPDTVPDRVMS----NIYE 160
            K   +  +  + +      +L    +     + +       P+   +        +   
Sbjct: 116 MKEKVDKIELFNYLPAQGPVKLNNPDVTLYYIEYYGLDPSNPPENPYNFYFGHWVCDGQR 175

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            LI  +  +  +   +      +  +     L     +          + DP  G+G  L
Sbjct: 176 SLISDYSLKKRKFIGNTSMDPQLSLIMANQALIKSGDI----------VMDPFVGSGSLL 225

Query: 221 TDAMNH--------VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
             A +         +     H K  P  + +  +   E  ++         ++   +   
Sbjct: 226 VAAAHFGAYVLGVDIDFLMLHGKSRPTRIQNRSKPRGEDESIY------HNMKQYGKDSQ 279

Query: 273 SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
             ++  G +      +  +    +++PP+G +   ++    K +K  E    G  +P   
Sbjct: 280 YLDVIVGDSSLPFWHSRLQLDSIITDPPYGIREATERIGSTKNYKISEDHLQGH-IPSKI 338

Query: 333 DGSMLFL-MHLANKLELPPNGGGRAA 357
           D S+  +   L N         GR  
Sbjct: 339 DYSLTDIYTDLLNFGAKHLKLNGRLV 364


>gi|317486505|ref|ZP_07945329.1| ankyrin and armadillo repeat-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922234|gb|EFV43496.1| ankyrin and armadillo repeat-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 913

 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 41/156 (26%)

Query: 209 LYDPTCGTGGFLTDAMNHVAD------CGSHHKIPPILV----------------PHGQE 246
             DP CG G FL  +   + +           +                       +G E
Sbjct: 356 FLDPACGCGNFLIVSYRELRELELQVLLAIKAETKGDTRFLALDIRPLIKVSISQFYGIE 415

Query: 247 LEPETHAVCVAGMLI--RRLESDPRR-----------DLSKNIQQGSTLSKDLFT---GK 290
           LE     V    M +    +     +             S  I   + L+ D       +
Sbjct: 416 LEEFPVEVARVSMWLMEHVMNLKVGKTFGQVISSIPLQHSATIVCANALTIDWKDVVVPE 475

Query: 291 RFHYCLSNPPFGKKWEKDK---DAVEKEHKNGELGR 323
           + HY + NPPF      D+   + +    K  +  R
Sbjct: 476 KLHYIMGNPPFSGYQYMDEQQKEYIANLFKKNKYSR 511


>gi|326407902|gb|ADZ64972.1| type II restriction-modification system modification subunit
           [Lactococcus lactis subsp. lactis CV56]
          Length = 230

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 48/163 (29%), Gaps = 34/163 (20%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI+    E  +   +  TP+ +V     +     + + +    +  T  +P  G G F
Sbjct: 4   EKLIK--SKERVQQHGEVFTPQWMVKKMLDV-----EGIKQACENIDATFLEPAAGDGNF 56

Query: 220 LTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           L   +       + H                 +G E   +   +  + MLI  L    + 
Sbjct: 57  LVAILERKLKSVTDHFSSGHWKTKSLFALSSIYGIEFLADNLEIARSRMLIHYLNWYEKN 116

Query: 271 DLSK-----------------NIQQGSTLSKDLFTGKRFHYCL 296
              +                 NI +G+TL+K            
Sbjct: 117 FQEQLHSSTDLYKSAMYIIRRNIVRGNTLTK-KHPDYDIPIIF 158


>gi|15611993|ref|NP_223645.1| hypothetical protein jhp0928 [Helicobacter pylori J99]
 gi|4155507|gb|AAD06506.1| putative [Helicobacter pylori J99]
          Length = 2231

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 118/402 (29%), Gaps = 76/402 (18%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            + TP     L    +    D L   +    + +++P+ GTG F+           +H  
Sbjct: 524 AYYTP----KLVIDSIYQGLDQLGFNNDNHPKEIFEPSLGTGKFI-----------AHAP 568

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL+P +  +                 L  N    +T  ++    + +   
Sbjct: 569 SDKNYRFIGTELDPISANLSK--------------FLYPNQVIQNTALENYQFYQEYDAF 614

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPP+G       +  E  +++                   FL     +L+      G 
Sbjct: 615 VGNPPYGNHKIYSSNDKELSNESIHNY---------------FLGKAIKELKDD----GI 655

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
            A V+  S  F         ++R  + +N      + LP  +F  T       I+  +K 
Sbjct: 656 GAFVV--SSWFMDAKNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKG 710

Query: 416 EERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILDIYVS---RENG 462
            E+        A   +  I N          +  +        + +I++   +    +  
Sbjct: 711 VEKATNQSFTKAMPYYDKILNSLDDDTLFALQNNRFDSFIPSDQLKIVNAVANHFGFKQE 770

Query: 463 KFSRML---DYRTFGY----RRIK---VLRPLRMSFILDKTGLARLEADITWRKLSPLHQ 512
           K  R     D   FGY     +I    + +  + S  L++  L           L  L  
Sbjct: 771 KLQRWYEKIDTANFGYSTQDYKIIKDFIDKVGKNSINLNEQTLNEYFIHHPENILGHLSL 830

Query: 513 SFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
                  +   +QIY Y       +    S   K    K  K
Sbjct: 831 EKTRYRFETNGEQIYKYDLQALEDESLDLSQALKQAIEKLPK 872


>gi|330824404|ref|YP_004387707.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
 gi|329309776|gb|AEB84191.1| N-6 DNA methylase [Alicycliphilus denitrificans K601]
          Length = 987

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 51/317 (16%)

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDA 197
             S      D +P  ++S+IYE           +  E          L   +L+LD    
Sbjct: 266 QLSFFPYQFDVIPVELISSIYEQFAHAEPQTGGKRTEALRNGVHYTRLSVVSLVLDEVMD 325

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEP 249
                     ++ D TCG+G FL +A+  +    S  + P             +G ++  
Sbjct: 326 GLSGRE----SVLDLTCGSGVFLVEALRRLVHLRSQGQPPTRELIRSTLYGQVYGVDISE 381

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQ----GSTLS----------KDLFT------- 288
               V    + +  LE DP     ++++     G TL            D          
Sbjct: 382 AAIRVAAFSLYLAALELDPDPQPPQSLKFQPLIGRTLLVGDARTVERDGDGKAVLATPTG 441

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
            K+F   + NPP+  + +   +A  K            G+P    G  L       +   
Sbjct: 442 LKQFDLIVGNPPWSFRGQTGTEARRKTR--------VAGVPAQPRGEGL---DFVLRAAE 490

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL---FFRTNIAT 405
             +   R  I+LS+ P F+       +   + ++       +V L ++L    F T    
Sbjct: 491 FSHEKTRFGIILSAMPFFSRSGTGMAAA--QHVMRAVAPITLVNL-SNLCSWLFATAAMP 547

Query: 406 YLWILSNRKTEERRGKV 422
            + + +  + ++R  +V
Sbjct: 548 AVVLFARHRPKQRTDQV 564


>gi|258648634|ref|ZP_05736103.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260851424|gb|EEX71293.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 1946

 Score = 41.5 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++      +L D               + +P+ G G F+    + V        
Sbjct: 104 AFYTPKEITDTLADMLAD--------YSVRPARMLEPSAGVGVFV----DSVLRHSPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFTGKRFH 293
           +    +   ++L   T        ++R L  D +      + I+              F 
Sbjct: 152 V----MAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIE--------KPFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D +      K+G  GR                 +   K       G
Sbjct: 192 LAVSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQADLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|325919124|ref|ZP_08181183.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
 gi|325550433|gb|EGD21228.1| type I restriction-modification system methyltransferase subunit
           [Xanthomonas gardneri ATCC 19865]
          Length = 382

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 130 AGLLYKICKNFSGIELHPDTVPD--RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
            G+LY++ K          T  +   ++ + Y   + ++     +     +TPR +  L 
Sbjct: 297 KGILYELIKRIHEKAAPLMTAEEGTDILGHFYGEFL-KYTGGDKKALGIVLTPRHITELF 355

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                         +     T+ D   GTGGFL  AM
Sbjct: 356 A----------LIANVNKKSTVLDICAGTGGFLVSAM 382


>gi|325853938|ref|ZP_08171454.1| hypothetical protein HMPREF9303_2022 [Prevotella denticola CRIS
           18C-A]
 gi|325484275|gb|EGC87205.1| hypothetical protein HMPREF9303_2022 [Prevotella denticola CRIS
           18C-A]
          Length = 1328

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 63/426 (14%), Positives = 120/426 (28%), Gaps = 89/426 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++    + +L +   A           + +P+ G G F+               
Sbjct: 104 AFYTPTEITETTSGVLKENGIAPL--------RMLEPSAGRGAFV--------------- 140

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                       + E  A     +L  ++ S    +    I+    + K  F G  F   
Sbjct: 141 ----DAFLRDNPQAEVMAFEK-DLLTGKVLSHLYPEQQVRIEGFERIEKP-FEGY-FDVA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D    + + + G   R      KI +       +   K       GG 
Sbjct: 194 VSNVPFG-----DVAVFDAQFEKGSAVR-RAAAKKIHN-------YFCLKTLDTVRDGGI 240

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A+++    L         S +R  +L    + + V +P +LF     T     L +L  
Sbjct: 241 VALLVPQGVLN----ADSNSAVRHLMLSQADLLSAVRMPNNLFTENAGTEAGCDLLVLQK 296

Query: 413 R--KTEERRGKVQLI--------------------NATDLWTSIRN----EGKKRRIIND 446
           R  K E    +  L+                    +        R+           +++
Sbjct: 297 RVGKEELSEDEKLLVEPAEDNRDNIPANAYFLRYPDCIVHTEEKRSTDLYGKPAMVYLHE 356

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFG--------YRRIKVLRPLRMSFILDKTGLARL 498
                I        +      LD + +G         +R  + R    + +        +
Sbjct: 357 GGVEGIARDLRGILSQDIQMRLDLQRYGQGVKPEEITQRASLQRTPVQNVLASPVQAQTV 416

Query: 499 EADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI-----KSNEAKTLKVKAS 553
               T  K +            P++     + +  +  K++      K  +A+  K K  
Sbjct: 417 REKTTSVKTANQKSQEQASSPNPVLTLFDLWEFTVTEQKQATTGKKQKREKAEKTKTKPK 476

Query: 554 KSFIVA 559
                A
Sbjct: 477 AKEKTA 482


>gi|281425567|ref|ZP_06256480.1| putative DNA methylase [Prevotella oris F0302]
 gi|281400305|gb|EFB31136.1| putative DNA methylase [Prevotella oris F0302]
          Length = 1579

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 111/359 (30%), Gaps = 56/359 (15%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDAIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E    
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVDSDLIVLQKQSGKEIGEG 309

Query: 422 V--QLINATDLWTSI-RNEGKKRRIINDDQRRQIL--DIYVSRENGKFSRMLDYRTFGYR 476
           +  Q +    +      +       + + + + I    I   R+ G          + + 
Sbjct: 310 IEQQFVQTASVPKGDGFSIAFNHNSLFEGEWKDISHRTIATDRQMGTDPYGKPAWEYTFD 369

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535
                    +   L      R +  + +    P+ +  W   +  M Q++      E  
Sbjct: 370 GGIEDMADSLRTQLSLEVEQRFDRKL-YETGIPMTREEWQVQVDKMEQKVQGGLKTEQT 427


>gi|320547430|ref|ZP_08041717.1| hypothetical protein HMPREF0819_1123 [Streptococcus equinus ATCC
           9812]
 gi|320447907|gb|EFW88663.1| hypothetical protein HMPREF0819_1123 [Streptococcus equinus ATCC
           9812]
          Length = 904

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 43/185 (23%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             ++  Y++L+ +      +   D  T R+  +     L    D +            DP
Sbjct: 311 DDLTASYQNLVDKINENEDKDITD-KTRRENRNTFIRELDSLLDRISNIK------FLDP 363

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPI------------------LVPHGQELEPETHAV 254
            CG+G FL      +                                 +G EL+   H V
Sbjct: 364 ACGSGNFLIITYKEIRRLEVKILKSLRELRQDRTIDFFETSKISLNQFYGIELDDFAHEV 423

Query: 255 CVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDL-----FTGKRFHYCL 296
               + I   + +   +              + NI QG+ L  D             Y +
Sbjct: 424 ARLSLWIAEYQMNLEAENEINLKSAFLPLRDAGNITQGNALRLDWNEILPHQSDDEIYLI 483

Query: 297 SNPPF 301
            NPP+
Sbjct: 484 GNPPY 488


>gi|282878612|ref|ZP_06287388.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
 gi|281299283|gb|EFA91676.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
          Length = 1588

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+L++N  + + + LP+ +F     T+I + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDIGSDLIVLQKQSGKE 305


>gi|257079363|ref|ZP_05573724.1| adenine-specific DNA methylase [Enterococcus faecalis JH1]
 gi|294780268|ref|ZP_06745637.1| N-6 DNA Methylase [Enterococcus faecalis PC1.1]
 gi|307268130|ref|ZP_07549517.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
 gi|256987393|gb|EEU74695.1| adenine-specific DNA methylase [Enterococcus faecalis JH1]
 gi|294452532|gb|EFG20965.1| N-6 DNA Methylase [Enterococcus faecalis PC1.1]
 gi|306515520|gb|EFM84048.1| N-6 DNA Methylase [Enterococcus faecalis TX4248]
          Length = 335

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 103/340 (30%), Gaps = 54/340 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFS--STIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
           S++ ++ +N + I +DF       +   E    L  +      I+L P+      +  + 
Sbjct: 27  SFLDAYIENGENILDDFQVRVLDGVPNPETVKQLETLYHTIKKIDLAPE-----DVRRLS 81

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           + L+ +   +    A   +TP  +  L   L+          +      + DP  G G  
Sbjct: 82  QLLLLKGTRKEQLQANHQLTPDGIGFLFVYLV------EQLTNKSEPLKILDPASGMGNL 135

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L   + ++   G        +  +G +++    AV                    NIQ  
Sbjct: 136 LLTVLLNLETAGY------KVSGYGVDIDETLLAVSSVN----------NAWSQANIQL- 178

Query: 280 STLSKDLFTG---KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
               +D             LS+ P G            E   G       G    S    
Sbjct: 179 --FHQDGLQDLLLDPVDLALSDLPVGY-------YPNDERAKGFAAAAEEGH---SYAHH 226

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      ++        A   L   P         E   + WL +N  ++ ++ LP +
Sbjct: 227 LLMEQAMKYVKP-------AGFGLFLIPTNILETEQSE-FFKNWLTKNVYLQGMIQLPDE 278

Query: 397 LFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIR 435
           LF    +  + L + +     E+  +V L     L    +
Sbjct: 279 LFKSEQSRKSILLVQNKGADAEQVKEVLLAKLASLKDINK 318


>gi|311031320|ref|ZP_07709410.1| N-6 DNA methylase [Bacillus sp. m3-13]
          Length = 331

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 91/279 (32%), Gaps = 47/279 (16%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +      L+      L +       T+ DP  GTG  LT  +NH        +
Sbjct: 94  HQMTPDAIAMFMGYLVGKYTSHLQQL------TMLDPAIGTGNLLTAVLNH--------Q 139

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               L   G +++     +      +        ++ + ++     LS      +     
Sbjct: 140 PNKKLEAFGVDVDDLLVKLAYNNANL--------QEQAISLFNQDGLSN--LFIEPVDVV 189

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +S+ P G  +  D +A   + K  E           S    LF+       +     GG 
Sbjct: 190 VSDLPVGY-YPDDNNAANFKLKAEEGH---------SYAHYLFIEQGLRYTKP----GGH 235

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLEND-LIEAIVALPTDLFFRTNIATYLWILSNRK 414
              ++ +S          E++    L++++  I+ ++ LP  +F     A  + +L  + 
Sbjct: 236 LLFLVPNSMF-----EEEEAKKVNALIKDEAYIQGMLQLPETMFQNKYHAKSILVLQKKG 290

Query: 415 -TEERRGKVQLINATDL--WTSIRNEGKKRRIINDDQRR 450
              E   +  L+N        ++     +      +Q+ 
Sbjct: 291 IGIEPPKEALLVNLPSFSNMQAMEKIMTQINHWFSEQKN 329


>gi|158320371|ref|YP_001512878.1| putative restriction enzyme [Alkaliphilus oremlandii OhILAs]
 gi|158140570|gb|ABW18882.1| putative restriction enzyme [Alkaliphilus oremlandii OhILAs]
          Length = 1006

 Score = 41.5 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 67/182 (36%), Gaps = 24/182 (13%)

Query: 290 KRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           + +   ++NPP+      +   K  +E  +K+ +                LF + +   +
Sbjct: 399 QEYDVVITNPPYSGLRRLNCILKQFIEAHYKDYKYD--------------LFSVFMVKNM 444

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G A  +  +   F     S    +R+++L++  + +++ L  + F   ++A  
Sbjct: 445 R-YTRNNGIAGFMTPNVWQF----ISSYENLRKYILDHYQLVSLIQLGDEGFKDASVAIS 499

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
            +++   K + +   + +   ++     +    K R  + +Q      ++ +    K + 
Sbjct: 500 TFVIKKCKADSKT--IFIKLNSEDSKDTKTVQNKIRNFDKEQYAVDQRMFHNITGNKLAF 557

Query: 467 ML 468
            +
Sbjct: 558 WI 559


>gi|320007859|gb|ADW02709.1| hypothetical protein Sfla_1259 [Streptomyces flavogriseus ATCC
           33331]
          Length = 388

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 69/219 (31%), Gaps = 47/219 (21%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           +  F S       +F +PR V    +AL+                T+ DP CGTG FL  
Sbjct: 189 LTEFASRGRHR--EFSSPRVVASAVSALVEKHLAG----------TVLDPFCGTGSFLWA 236

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
           A++H A+ G   +        G E + +   +         +  D  R +   I++G + 
Sbjct: 237 ALDHAAEQGVAAE------FIGYEFDAQLAELAE------GIGRDAPRHVV--IEKGDSF 282

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
                        ++ PP G         ++                  S+G +  L   
Sbjct: 283 ---QRGLADADVVVTAPPVGLSLADRHLLLDGS--------------TTSEGYVAALDKC 325

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
              L+     GGRA +   S     G     +    R L
Sbjct: 326 VRALKP----GGRAVLQYRSLVHLRGPVRGVQDVPGREL 360


>gi|260663422|ref|ZP_05864313.1| adenine-specific DNA methylase [Lactobacillus fermentum 28-3-CHN]
 gi|260552274|gb|EEX25326.1| adenine-specific DNA methylase [Lactobacillus fermentum 28-3-CHN]
          Length = 289

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 97/299 (32%), Gaps = 42/299 (14%)

Query: 127 LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186
           +  A    K+ K +  I+L            + +  + +   + +  A   MTP  +  L
Sbjct: 1   MPDAETTEKLTKLYQSIDL--SQADRETKRRLLQLGMLKVTQKDAIQATHQMTPDSIGML 58

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
             +L+                 + DP  GT   LT  MNH+            +  +G +
Sbjct: 59  MASLI------ERVTKIDHPYRILDPVVGTANLLTTVMNHLQSVTD-----QPIEGYGVD 107

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
            +    +V      +        +DL   +     +        +    +++ P G    
Sbjct: 108 NDESMLSVAAVSTQL--------QDLPVQLYHQDAIRD--LDVPQVDRVVADLPVGY--- 154

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                   ++      R   G       S +  + +   +     GG    + L    LF
Sbjct: 155 ----YPLDDNTKRYRTRAKEGH------SYVHHLLIEQAMNYLLPGGF--GVFLVPKALF 202

Query: 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQL 424
             +  +G   +  W+     ++ ++ LP +LF  + +A  L +L  +  T  + GKV L
Sbjct: 203 QSKETAG---LVEWIQSVAYMQGLINLPEELFANSTVAKSLLLLQRQGGTSHQAGKVLL 258


>gi|121582865|ref|YP_973307.1| hypothetical protein Pnap_4283 [Polaromonas naphthalenivorans CJ2]
 gi|120596127|gb|ABM39565.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 1233

 Score = 41.5 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 22/157 (14%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +    +   R + ++Y+ L         +      TP  V        L P     +E 
Sbjct: 174 HDFTDASWNTRFLGDLYQDL----SEATRKRYALLQTPEFVEEFILDRTLTP---AIREF 226

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHV---------ADCGSHHKIPPILVPHGQELEPETHA 253
                 + DPTCG+G FL      +         A          +    G +L P   A
Sbjct: 227 GYREVRMIDPTCGSGHFLLGGFQRMVGEWSRAAPAHNRRDVAQKALDAVAGVDLNPFAVA 286

Query: 254 VCVAGMLIRRLESDPRRDLSK------NIQQGSTLSK 284
           +    +L+  L++     LS       ++  G +L  
Sbjct: 287 ISRFRLLLAALQASDVHRLSDAPDFTIHVAIGDSLLH 323


>gi|325855560|ref|ZP_08171871.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
 gi|325483774|gb|EGC86734.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
          Length = 2072

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIAEALSAADVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+LL+N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLLQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|282859989|ref|ZP_06269073.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
 gi|282587195|gb|EFB92416.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
          Length = 2072

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIAEALSAADVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+LL+N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLLQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|224436461|ref|ZP_03657475.1| hypothetical protein HcinC1_00880 [Helicobacter cinaedi CCUG 18818]
 gi|313142972|ref|ZP_07805165.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128003|gb|EFR45620.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 1111

 Score = 41.5 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 61/237 (25%), Gaps = 65/237 (27%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPDRV----- 154
           Y+    FS      F+  + ++ I  L     L  ++    +      D   +       
Sbjct: 287 YLNGGLFSPQDNDFFDLQNPNAHINSLHISNDLFSELFATLNRYHFTIDEADESAVEVAL 346

Query: 155 ----MSNIYEHLIRRFGSEVS----------EGAEDFMTPRDVVHLATAL-LLDPDDALF 199
               +  I+E L+ +  ++            +    + TPR++V       +L       
Sbjct: 347 DPELLGQIFESLLSQLFTDNKLEKLDKNSLRKATGSYYTPREIVRYMVRSAILLHLQTKL 406

Query: 200 KE--------------------------------SPGMIRTLYDPTCGTGGFLTDAMNHV 227
           K                                        + DP CG+G F    +N +
Sbjct: 407 KGKVDSQFLESLVFDSSLRGSEATEAIHTQKTILQELATLKILDPACGSGAFPMGILNEI 466

Query: 228 ADCGSHHKIPP----------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
               S                    +G +++P    +      +  +  +   D+  
Sbjct: 467 IRIQSDLDDTRPLYTRKLEILQECIYGIDIQPMATEIARLRCFLSLIIDENPSDIKP 523


>gi|222101999|ref|YP_002546589.1| hypothetical protein Arad_12049 [Agrobacterium radiobacter K84]
 gi|221728116|gb|ACM31125.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 951

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 64/209 (30%), Gaps = 38/209 (18%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL-------------EPETHA 253
             + DP CG+G FL  A+  + D      +    +  G++               P    
Sbjct: 357 FRVLDPACGSGNFLYLALLGLKDLEHRVNLEAEAMGFGRQFPTVGPQGVGGIELNPYAAE 416

Query: 254 VCVAGMLIR----------RLESDPRRDLSKNIQQGSTLSK-DLFTG--KRFHYCLSNPP 300
           +    + I            +E  P      NIQ    L   D         H  + NPP
Sbjct: 417 LARVTVWIGEIQWMRKNGFDVERKPILRPLDNIQCRDALLNKDGTEAVWPEAHVTIGNPP 476

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL--PPNGGGRAAI 358
           F    +K    + + +       F   +P  +D    F+M+   K           RA  
Sbjct: 477 FIGD-KKMISLLGEPYVEQLRRTFAGRVPGSAD----FVMYWFEKARARILAKAQERAGF 531

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDLI 387
           V + S           S+I + ++E   I
Sbjct: 532 VATQSI-----RRGASSDILKRIVETGSI 555


>gi|195394858|ref|XP_002056056.1| GJ10432 [Drosophila virilis]
 gi|194142765|gb|EDW59168.1| GJ10432 [Drosophila virilis]
          Length = 491

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 57/207 (27%), Gaps = 21/207 (10%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI++   +  +   +      +  L     +  D  L          ++DP  GTG  L
Sbjct: 180 HLIKQLSLKQRKFIGNTSMDAQLSLLMANQAMVRDGDL----------VFDPFVGTGSLL 229

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 230 VSAAKFGGYVLGADIDFMMVHARCRPSRITQKVRDKDESIRANLQQYGCADRYMDVLVAD 289

Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-- 337
             S         F   +++PP+G +   +K   +   K           P  S  S+   
Sbjct: 290 -FSNPLWHRRITFDSIITDPPYGIREATEKVENKFNPKENTRTAAMAHYPSTSHYSLQHL 348

Query: 338 ---FLMHLANKLELPPNGGGRAAIVLS 361
               L   A  L+     GGR    L 
Sbjct: 349 YADLLQFGATHLK----LGGRLVCWLP 371


>gi|38491999|gb|AAM03043.3| hypothetical protein [Helicobacter pylori]
          Length = 2879

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 91/308 (29%), Gaps = 58/308 (18%)

Query: 135  KICKNFSGIELHPDTVPDRVMSNIYEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATA 189
            +I   FSG                +E L        F    S   + + TP     L   
Sbjct: 965  EILAQFSGWGGLESYFKKDQRPKEFEELKALLTKDEFRRAYSSTRDAYYTP----KLVID 1020

Query: 190  LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
             +    D L        + +++P+ GTG F+           +H          G EL+P
Sbjct: 1021 SIYQALDRLGFNQNNHPKEIFEPSLGTGKFI-----------AHAPSDKNYRFVGTELDP 1069

Query: 250  ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                          + ++  + L  N    +T  ++    + +   + NPP+G       
Sbjct: 1070 --------------ISANISQFLYPNQVIQNTALENHPFHQDYDAFVGNPPYGNHKIYSS 1115

Query: 310  DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
            +  E  +++                   FL     +L+      G  A V+  S  F   
Sbjct: 1116 NDAELSNESVHNY---------------FLGKAIKELKDD----GIGAFVV--SSWFMDA 1154

Query: 370  AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
                  ++R  + +N      + LP  +F  T       I+  +K  +         A  
Sbjct: 1155 KNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKGVDEATNQSFTKAMP 1211

Query: 430  LWTSIRNE 437
             +  I N 
Sbjct: 1212 YYDKILNS 1219


>gi|299144309|ref|ZP_07037389.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
 gi|298518794|gb|EFI42533.1| superfamily II DNA and RNA helicase [Peptoniphilus sp. oral taxon 386
            str. F0131]
          Length = 2878

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 71/248 (28%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+    +                   + +P+ G G F+ +  + +         
Sbjct: 1148 FYTPKTVIDSIYS--------TLSGMEFKNGNILEPSMGIGNFIGNLPDEMKKSK----- 1194

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 1195 -----FYGVELDSVSGRIGKL----------LYPESDIQIKG---LEETSFSNNFFDVVI 1236

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1237 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1276

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1277 AFIT-----SSGTMDKKDESVRRYLAARAGFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1331

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1332 DSIRERDE 1339


>gi|227535801|ref|ZP_03965850.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244289|gb|EEI94304.1| DNA methylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1811

 Score = 41.5 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 77/259 (29%), Gaps = 55/259 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP  ++   ++          ++S   I    +P+ G G F+               
Sbjct: 104 AFYTPPQIIDAVSS--------ALRDSGLKIDKFLEPSAGIGSFIQSFSE---------N 146

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +  + ++             L+   +   +     NI+              +   
Sbjct: 147 QQVKVTAYEKD-------------LLTG-KILKQLYPESNIRISGFEEIPEKEQNSYDVV 192

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            SN PFG     D       +            P     +     +   K       GG 
Sbjct: 193 ASNIPFGDTSVFDLSYSRSRN------------PAKEQAARSIHNYFFLKGNDMLREGGL 240

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
              + S   L + +       IRR L++++ + + V LP +LF     T + + L IL  
Sbjct: 241 QVFITSQGILNSPKNEP----IRRALMQDNNLVSAVRLPNNLFTDYAGTEVGSDLIILQK 296

Query: 413 RKTEERRGKVQLINATDLW 431
              ++      L +  +L+
Sbjct: 297 NTAKQG-----LTDTEELF 310


>gi|325953795|ref|YP_004237455.1| hypothetical protein Weevi_0153 [Weeksella virosa DSM 16922]
 gi|323436413|gb|ADX66877.1| hypothetical protein Weevi_0153 [Weeksella virosa DSM 16922]
          Length = 911

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 94/341 (27%), Gaps = 70/341 (20%)

Query: 39  TLLRRL------ECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
             L RL      +      +   +E       +N D           F   +  +   L 
Sbjct: 183 VFLVRLLFCLFADDTGIFEKDTFKEFIE--VKTNEDGSDLGAWLAQYFQVLNTPTDKRLK 240

Query: 93  STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
                 NL+ ++A+F            F   +        + +I    S ++     +  
Sbjct: 241 ------NLDEHLAAF-PYVNGKL----FEEPLPIASFNSRMREILLECSSLDWG--KISP 287

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFK----------- 200
            +  ++++ ++     E         T  ++++ L   L LD   A FK           
Sbjct: 288 AIFGSMFQSVM---NPEERRNLGAHYTSEKNILKLIKPLFLDELQAEFKKVKSNKNKLKE 344

Query: 201 -ESPGMIRTLYDPTCGTGGFLTDAMNHVADCG----------------SHHKIPPILVPH 243
                      DP CG G FL      +                        +  +   +
Sbjct: 345 FHQKLGSLKFLDPACGCGNFLIITYRELRLLELEILKELYGGQQVIGIDQIMLVDVDQFY 404

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKN-------------IQQGS---TLSKDLF 287
           G E +     +    + +   + + R   +               I  G+   T+  D+ 
Sbjct: 405 GIEYDEFPARIAEVALWLMDHQMNLRISEAFGMYYARLPLKKSATIVHGNALRTIWTDIV 464

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                 Y L NPPF  K  + K+  E        G  G G+
Sbjct: 465 PKSELSYILGNPPFYGKQYQSKEQKEDMA-LVFNGVKGAGV 504


>gi|77163972|ref|YP_342497.1| hypothetical protein Noc_0443 [Nitrosococcus oceani ATCC 19707]
 gi|76882286|gb|ABA56967.1| hypothetical protein Noc_0443 [Nitrosococcus oceani ATCC 19707]
          Length = 46

 Score = 41.5 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 1  MTEFTGSAASLANFIWKNAEDLWGDFKHTDFGKV 34
          M++     + L   +W  A+DL       DF   
Sbjct: 1  MSKD--QLSQLGKTLWAIADDLREAMNADDFRDY 32


>gi|313637996|gb|EFS03287.1| N-6 DNA methylase [Listeria seeligeri FSL S4-171]
          Length = 336

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 77/256 (30%), Gaps = 40/256 (15%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +  +   LL                ++ DP CGT   LT  +N +       K
Sbjct: 95  HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 143

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +   G +++    ++      +   +   ++     +     L+  L         
Sbjct: 144 DGLEIHASGVDVDDLLISLA-----LVGADLQRQKMT---LLHQDGLANLLVDPVDVVVS 195

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
                F   +  D++A   E    E   F            LF+       +     GG 
Sbjct: 196 DLPVGF---YPDDENAKSFELCREEGHSF---------AHFLFIEQGMRYTKP----GGY 239

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
              ++  +          +    +++ +N  IE I+ LP  LF        + IL     
Sbjct: 240 LFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGIIKLPETLFKSEQARKSILILRKAAE 295

Query: 416 E-ERRGKVQLINATDL 430
             +   +V L N + L
Sbjct: 296 NVKPPKEVLLANLSSL 311


>gi|227892118|ref|ZP_04009923.1| DNA methylase [Lactobacillus salivarius ATCC 11741]
 gi|227866050|gb|EEJ73471.1| DNA methylase [Lactobacillus salivarius ATCC 11741]
          Length = 711

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 47/196 (23%), Gaps = 48/196 (24%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPG------------MIRTLYDPT 213
             +         T    +      L   D    F+++ G                  DP 
Sbjct: 100 SEDKRSHLGMHYTSVPNIMKVINPLFLDDLHEEFEKAKGNETKLNNLLERMRKMKFMDPA 159

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELEPETHAVCVAGM 259
           CG+G FL      +                             +G E+E     V    +
Sbjct: 160 CGSGNFLIITYKELRRLEMDIFEELGKLNNSTMYVPTIDLGQFYGIEIEDFAVDVTRLSL 219

Query: 260 LIRRLESDPR--------------RDLSKNIQQGSTLSKDL-----FTGKRFHYCLSNPP 300
            I   + +                     +I+ G+ L  D         +   Y   NPP
Sbjct: 220 YIADHQMNLELKRRYGDVLRETLPLHKVGDIRCGNALRLDWNEILPHEKEDEIYLFGNPP 279

Query: 301 F--GKKWEKDKDAVEK 314
           +  GK   K+     +
Sbjct: 280 YKGGKSQPKEYKKYTE 295


>gi|225868543|ref|YP_002744491.1| type II restriction enzyme and methylase [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701819|emb|CAW99254.1| type II restriction enzyme and methylase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 540

 Score = 41.5 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 35/250 (14%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
            +  +    + TP+ +        +                + +P+ G G F+  A    
Sbjct: 5   QDSKKNRGGYYTPQKLTDFIAKWAIS----------TPSDKVLEPSAGDGRFVDSAYKVF 54

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +         IL         E+ A+ +     + + SD  +   + +Q          
Sbjct: 55  QNFDVAFNTDQILAI----EYNESEALKIDNNKAKVINSDFFKFFQEKLQN--------- 101

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
             + F+  L NPPF +    DK+   K   +        G       ++           
Sbjct: 102 -KETFNVILGNPPFIRYQSIDKEISAKAFDSMIY----YGFNPNKMTNL--WAPFLLLSA 154

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYL 407
                 GR  +++ +  L    A    +EIR +LL+      +++   +LF        +
Sbjct: 155 ELLTADGRLGMIIPAELLQVDYA----AEIRAYLLQKFSELTLISFNDNLFEGAQQEIVV 210

Query: 408 WILSNRKTEE 417
             L   K++ 
Sbjct: 211 L-LGKIKSKN 219


>gi|297718581|gb|ADI50196.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2934

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%)

Query: 134  YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191
              + + F           D         L+    F            T   +V      +
Sbjct: 1043 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVSELWRAV 1100

Query: 192  LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                    +        L +P CG G F+  A             P  +   G E+EP +
Sbjct: 1101 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1140

Query: 252  HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
              +                  S+ I+      +   T   F   + N PF          
Sbjct: 1141 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1177

Query: 312  VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                      GR+ P  P  +   +        K       GG  A+V S    F   A 
Sbjct: 1178 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1224

Query: 372  SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
             G+   R  +     +   V LPT  F     T + T + +   R+ + +  +
Sbjct: 1225 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1275


>gi|77164957|ref|YP_343482.1| hypothetical protein Noc_1465 [Nitrosococcus oceani ATCC 19707]
 gi|254434597|ref|ZP_05048105.1| hypothetical protein NOC27_1528 [Nitrosococcus oceani AFC27]
 gi|76883271|gb|ABA57952.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090930|gb|EDZ68201.1| hypothetical protein NOC27_1528 [Nitrosococcus oceani AFC27]
          Length = 914

 Score = 41.5 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 53/217 (24%), Gaps = 53/217 (24%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR 207
             +   +  ++++ +I     E         T    +      L         E      
Sbjct: 278 SAINPDIFGSMFQAVID---EEQRGNLGQHYTSVSNIMKVIQPLFLDKLYAELEKSRKRD 334

Query: 208 T-------------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------- 239
                         ++DP CG+G FL  A   +                           
Sbjct: 335 RKLKELLIRLQNLRVFDPACGSGNFLIIAYKELRKLEMEVIDALNAISDQAEMYYSGIRL 394

Query: 240 LVPHGQELEPETHAVCV---------AGMLIRR----LESDPRRDLSKNIQQGSTLSKDL 286
              +G E++   H V             M  +      E+      S +I  G+ L  D 
Sbjct: 395 SQFYGIEIDDFAHEVATLSLWLAEHQMNMAFKAKFGYAEAALPLRDSGDIVCGNALRLDW 454

Query: 287 FT---------GKRFHYCLSNPPFGKKWEKDKDAVEK 314
                        R  Y   NPPF    E+ K+    
Sbjct: 455 EEVCPPADGSGNPREIYICGNPPFLGTTERSKEQSAD 491


>gi|317179152|dbj|BAJ56940.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F30]
          Length = 545

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSSYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++       K     RF  
Sbjct: 181 RYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQ-------KENFKQRFN- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|195153234|ref|XP_002017534.1| GL21470 [Drosophila persimilis]
 gi|194112591|gb|EDW34634.1| GL21470 [Drosophila persimilis]
          Length = 486

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 13/203 (6%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     +  +  L          ++DP  GTG  L
Sbjct: 178 HLIKDLSLKKRKFIGNTSMDAQLSLLMANQAMVREGDL----------VFDPFVGTGSLL 227

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 228 VSAAKFGGYVLGADIDYMMVHAQCRPSRISQRVRERDESIRANLKQYGCADRYMDVLVAD 287

Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             S         F   +++PP+G +   +K   +K  K           P  S  S+  L
Sbjct: 288 -FSNPLWHPRLLFDSIITDPPYGIREATEKVETKKSAKEDTRSEDMVHYPSTSHYSLQSL 346

Query: 340 -MHLANKLELPPNGGGRAAIVLS 361
              L          GGR    L 
Sbjct: 347 YCDLLEFSAKHLKLGGRLVCWLP 369


>gi|78189569|ref|YP_379907.1| hypothetical protein Cag_1609 [Chlorobium chlorochromatii CaD3]
 gi|78171768|gb|ABB28864.1| hypothetical protein Cag_1609 [Chlorobium chlorochromatii CaD3]
          Length = 521

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 67/264 (25%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                F TP  V     A + +               ++DP  G G         +    
Sbjct: 21  RDKGQFWTPSWVAEAMVAYVTEN-----------TDLVFDPATGRG----AFYEGLLKLN 65

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +   G +++P+         ++     +      +N        KD    ++
Sbjct: 66  K-----QNISFLGTDIDPD---------VLSDEIYNKENCFVEN----RDFIKDP-PNRK 106

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHK-------NGELGRFGPGLPKISDGSMLFLMHLAN 344
           F   ++NPP+ +    D+       K       N   GR G  +         FL+   N
Sbjct: 107 FKAIVANPPYIRHHRIDEATKILLKKIAISITGNSIDGRAGYHI--------YFLIQALN 158

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLL----ENDLIEAIVALPTDL--F 398
            LE      G+ A ++         A + E +  + L     E   IE +V        F
Sbjct: 159 LLEKD----GKLAFIMP--------ADTCEGKFAKNLWEWISEKFCIECVVTFDERATPF 206

Query: 399 FRTNIATYLWILSNRKTEERRGKV 422
              +    ++++ N K ++    +
Sbjct: 207 PNVDTNAIIFLIKNTKPQQTLQWI 230


>gi|300956331|ref|ZP_07168629.1| conserved domain protein [Escherichia coli MS 175-1]
 gi|300316843|gb|EFJ66627.1| conserved domain protein [Escherichia coli MS 175-1]
          Length = 109

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/108 (11%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 418 RRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGK-FSRMLDYRTFGYR 476
              KV  I+A+  +      GK +  ++++   +I+  Y + +N + ++ +   +     
Sbjct: 1   MDDKVLFIDASREF----KAGKNQNQLSEENIEKIVKTYRNGDNVEKYAYLASLKEIQDN 56

Query: 477 RIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQ 524
              +  P  +    ++  +  L       +L         ++   + +
Sbjct: 57  DYNLNIPRYVDTFEEEDEIDLLAVRAEREQLKAELAKLETEMAGYLKE 104


>gi|54023589|ref|YP_117831.1| putative DNA metyltransferase [Nocardia farcinica IFM 10152]
 gi|54015097|dbj|BAD56467.1| putative DNA methyltransferase [Nocardia farcinica IFM 10152]
          Length = 558

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 17/131 (12%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +      TP ++       +L         +      + DP CG G  L      +    
Sbjct: 12  KRHGRHYTPPELARFLARRVLAH----LPPASAAGWRVLDPACGEGELLLA----LHGEA 63

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGK 290
           +  +    +   G +L+    A   A      + +D           G  LS+       
Sbjct: 64  ARVRPGVPIRMTGYDLDESALARARARAAAAGMVADWHT--------GDFLSEAARLGPG 115

Query: 291 RFHYCLSNPPF 301
           RF   ++NPP+
Sbjct: 116 RFDAIITNPPY 126


>gi|307688883|ref|ZP_07631329.1| helicase domain protein [Clostridium cellulovorans 743B]
          Length = 1021

 Score = 41.5 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 51/227 (22%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L+++      +        + +P  G G F +   N +               +G EL+ 
Sbjct: 573 LIIENIYKALENFGFKEGNILEPAMGVGNFFSMIPNTM----------NKSKLYGVELDD 622

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +              +     NI+         +    F   + N PFG  ++   
Sbjct: 623 ISGRIAK------------QLYQKANIKIQ-GFETTDYPDNFFDVAIGNVPFG-DYKLYD 668

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              +K +       FG  L                        GG  A + S   L    
Sbjct: 669 PTYDKHNFMIHDYFFGKAL-------------------DKVRPGGIIAFITSKGTLDKEN 709

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                  +R+++ +   +   + LP   F     T +   +  L  R
Sbjct: 710 PS-----VRKYIAQRADLVGAIRLPNTAFKANANTEVTADILFLQKR 751


>gi|197301353|ref|ZP_03166434.1| hypothetical protein RUMLAC_00080 [Ruminococcus lactaris ATCC
           29176]
 gi|197299510|gb|EDY34029.1| hypothetical protein RUMLAC_00080 [Ruminococcus lactaris ATCC
           29176]
          Length = 306

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 30/215 (13%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           ++ F     + + D + PR    +     L   +            + D   G+G  L  
Sbjct: 88  VQEFMGLEFQVSGDVLIPRQDTEVLVEEALKLLEQEKVPKEKETVRMLDLCTGSGCILIS 147

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
            + +        K    +   G ++      +    + +     +              L
Sbjct: 148 ILYYA------AKEKIQIQGTGADISEAALRIAEENLDLLEKNGNKGMAEL--------L 193

Query: 283 SKDLFT--GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM 340
             DLF      F   +SNPP+ K         E    +         L    DG + F  
Sbjct: 194 ESDLFEQVDGTFGMIVSNPPYIKTSVISGLQEEVRLHDPF-----LALDGKEDG-LFFYR 247

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES 375
            +            RA +  +   LF      GE+
Sbjct: 248 KII--------EESRAYLQKNGVLLFEIGYDQGEA 274


>gi|313892833|ref|ZP_07826413.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442616|gb|EFR61028.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 97

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 17/112 (15%)

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
            +  K     +  G + +     +    +++  ++          +    +LSK      
Sbjct: 3   KADWKHYESNMFSGFDTDTTMLRISAMNLMLHSIKY-------PQVDYKDSLSKQNTIHD 55

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            +  CL+NPPF  K   DK+ +  E ++                 +LFL   
Sbjct: 56  AYTICLANPPF--KGSLDKETINDELRSITNN--------TKKTELLFLALF 97


>gi|296126924|ref|YP_003634176.1| hypothetical protein Bmur_1897 [Brachyspira murdochii DSM 12563]
 gi|296018740|gb|ADG71977.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 410

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 19/193 (9%)

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           F   + NPP+       ++    E +      F     K +DG          K      
Sbjct: 12  FDVVIGNPPY------VRNRELDEKQKMYFNSFY----KSADGQYDLYQLFYEKGINILK 61

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT-DLFFRTNIATYLWIL 410
                  + S+         S   ++R ++L+N +I+ I+ +   ++F + +   Y+ IL
Sbjct: 62  ENSILGYITSNKF----TIASYGKKLREYILDNCIIKQIIDVSMINVFKKVSTYPYIIIL 117

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNE---GKKRRIINDDQRRQILDIYVSRENGKFSRM 467
              K E     ++          ++N+    +++  +ND+ +  IL           S  
Sbjct: 118 EKDK-ENIDNIIKYKKVLTEEELLKNKLECIEQKSYLNDENKNFILRKIPDFFVKIDSMS 176

Query: 468 LDYRTFGYRRIKV 480
           L        +  +
Sbjct: 177 LKLGDIATIKETI 189


>gi|224418935|ref|ZP_03656941.1| type I restriction enzyme [Helicobacter canadensis MIT 98-5491]
          Length = 266

 Score = 41.5 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 394 PTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
           P ++F        L ILS +       KV  I+A   +     EGK  R+ N     +I 
Sbjct: 1   PRNIFPHQVEEFSLLILSKQ----ENKKVFFIDAQKFYL---KEGKYNRLTN---IDRIY 50

Query: 454 DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQS 513
           D Y+S+++   SR++DYR       K     +   I D   L      +   +     + 
Sbjct: 51  DEYLSKQDSDISRLVDYRDLDEGNFKASYYTQKKDICDSVLLGEFLECVYRGQRVESKKD 110

Query: 514 F-WLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFG 565
              +D     ++    YG++E F++ S KS++ +  K++     I+  +    
Sbjct: 111 EVLMDCYNVGIKDFEDYGFSEVFLEFSPKSDQKRIEKLRIQAYDILLSMRGVS 163


>gi|163758715|ref|ZP_02165802.1| BseRI endonuclease, putative [Hoeflea phototrophica DFL-43]
 gi|162284005|gb|EDQ34289.1| BseRI endonuclease, putative [Hoeflea phototrophica DFL-43]
          Length = 1011

 Score = 41.5 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 64/231 (27%), Gaps = 34/231 (14%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLL-YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE 169
              + E  DF   I  ++   +    + K  +  E     V   V+  +YE +I    +E
Sbjct: 254 IHGVVEA-DFFDWIVEIDGGDVFVRTLAKRLARFEW--SKVEQDVLKVLYESVIG---TE 307

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-------TD 222
             +   ++ TP  +  +               +  +   + D  CG+G FL         
Sbjct: 308 TRQRLGEYYTPDWLADIVVQ---------ETVTEPLNSRVLDAACGSGTFLFHAIRRYIV 358

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI-----RRLESDPRRDLSKNIQ 277
           A                    G +L P    +     L+     R ++ D        + 
Sbjct: 359 AAEAKGMTVGQLIDGVTEHVIGMDLHPVAVTLARVTYLLAIGRHRLIDPDRGTIHIP-VY 417

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFG 325
            G +L           +   N       +KD         +    +  RF 
Sbjct: 418 LGDSLQ--WQEQNTDLWTAGNLVIQTDDKKDLFGNKLSFPDALVDDAARFD 466


>gi|153874389|ref|ZP_02002629.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152069145|gb|EDN67369.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 159

 Score = 41.5 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 20/161 (12%)

Query: 81  YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR--LEKAGLLYKICK 138
           +N S++    +        LES + +F            F+  I R  L+     Y + +
Sbjct: 16  FNESQFHRENV----IAKELESVVNTF------------FTGKIRRQTLQSIDSYYAVIR 59

Query: 139 NFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL-LDPDDA 197
                 +       + +  IYE+  + +  + ++      TP ++V           D  
Sbjct: 60  R-EAANIVNHHEKQKFLKVIYENFYKTYNPKGADRLGIVYTPNEIVQFMLKSTDYLLDKH 118

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
             +        + DP  GTG F+T+ + ++       K   
Sbjct: 119 FNRLLADKNVEILDPATGTGTFITELIEYLPTTTLSAKYKK 159


>gi|282881655|ref|ZP_06290318.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1]
 gi|281304414|gb|EFA96511.1| N-6 DNA Methylase [Prevotella timonensis CRIS 5C-B1]
          Length = 1932

 Score = 41.5 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 80/257 (31%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++      +L D               + +P+ G G F+    + V        
Sbjct: 104 AFYTPKEITDTLADMLAD--------YSVRPARMLEPSAGVGVFV----DSVLRHSPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRL--ESDPRRDLSKNIQQGSTLSKDLFTGKRFH 293
           +    +   ++L   T        ++R L  +   R    + I+              F 
Sbjct: 152 V----MAFEKDLLTGT--------ILRHLYPDHKMRTCGFEKIE--------KPFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D +      ++   GR                 +   K       G
Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDTVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + V LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFRQANLVSAVRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SN--RKTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKHLNKKEMSQDERLMT 311


>gi|255743728|ref|ZP_05417686.1| hypothetical protein VCH_000022 [Vibrio cholera CIRS 101]
 gi|255738589|gb|EET93976.1| hypothetical protein VCH_000022 [Vibrio cholera CIRS 101]
 gi|259156263|gb|ACV96210.1| conserved hypothetical protein [Vibrio cholerae Ban5]
 gi|259156380|gb|ACV96325.1| conserved hypothetical protein [Vibrio cholerae Ind5]
          Length = 1246

 Score = 41.5 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 46/191 (24%)

Query: 127 LEKAGLLYKICKNFSGIELHPD---------TVPDRVMSNIYE---HLIRRFGSEVSEGA 174
           L  A  L  I   F+ ++                D V+  +YE   +  ++   +  +  
Sbjct: 159 LPDAISLNDIIDAFNVVDTDAQANDSSEETIWQSDDVLGWMYESYNNAKKKAHKDSGDKT 218

Query: 175 E--------DFMTPRDVVHLATA---------------------LLLDPDDALFKESPGM 205
           E           TPR VV                          +   P   +    P  
Sbjct: 219 EYNKVSLQSQVYTPRWVVQFLVENSLGKMYLEMYPHSEIKQRYKIANAPTTQIRAPKPLH 278

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
                DP CG+G FL  A +   +             +G + + +     +    +  ++
Sbjct: 279 EVRTIDPACGSGNFLLYAFDFYYELYLDQIEN-----YGADYDEKDIPKLIIENNLHGID 333

Query: 266 SDPRRDLSKNI 276
            D R      +
Sbjct: 334 LDDRAIQLAQL 344


>gi|163783014|ref|ZP_02178009.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881694|gb|EDP75203.1| site-specific DNA-methyltransferase (adenine-specific) TthHB8I
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 446

 Score = 41.5 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 84/258 (32%), Gaps = 35/258 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  VV     L+ D               + +P      FL     +     
Sbjct: 19  KDFGIFFTPDWVVDFTIGLIEDEGLEFDNLK------ILEPAASGCQFL-----YGVKKN 67

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                   +   G E+  E         +     SD    +  +     T        +R
Sbjct: 68  RRDIFTKAIRKVGVEVNREV--------IEHVHASDGITIVHHDYLLWDT-------EER 112

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
           +   + NPP+G     D   ++ ++K  E  +    + +   G          K      
Sbjct: 113 YDLIIGNPPYGIPSLSDHYTIKIDNKTKEKYK---KVFETWHGKYNVYGAFIEKSIKLLK 169

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
             G+   ++ ++ +          ++R++L EN   E I+ + +++F      T + +L 
Sbjct: 170 DNGQLLFIVPATFMILDE----FKKLRKFLSENGKTE-IIYMGSEVFKPEADVTTV-VLK 223

Query: 412 NRKTEERRGKVQLINATD 429
            RK+ E + K++L    +
Sbjct: 224 FRKSREEKNKLKLYEHRE 241


>gi|282859062|ref|ZP_06268194.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
 gi|282588142|gb|EFB93315.1| N-6 DNA Methylase [Prevotella bivia JCVIHMP010]
          Length = 1553

 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|237707974|ref|ZP_04538455.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457960|gb|EEO63681.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 1227

 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|222109151|ref|YP_002551416.1| helicase SNF2 family [Agrobacterium vitis S4]
 gi|221738425|gb|ACM39290.1| helicase SNF2 family [Agrobacterium vitis S4]
          Length = 1701

 Score = 41.5 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 69/260 (26%), Gaps = 58/260 (22%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S          TP  ++    +          +    +   + +P  GTG F     
Sbjct: 156 DYASLARCTQYAHFTPEFIIRAIWS--------GLQRLGWLGGRVLEPGIGTGLFPALMP 207

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                              G EL+P T  +                     I  G     
Sbjct: 208 EAFR---------YKSYVTGVELDPVTARIVR------------LLQPKARIVNGDFSRT 246

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
           DL  G  +   + NPPF  +  +   A                          F+    +
Sbjct: 247 DL--GVIYDLAIGNPPFSDRAVRSDRAYRSLGLRLHDY---------------FIARSID 289

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRT 401
            L+     G  AA V S     +G     +S  R  + ++  + A + LP   F     T
Sbjct: 290 LLKP----GALAAFVTS-----SGTMDKADSTARGHIAKSADLIAAIRLPEGSFRRDAGT 340

Query: 402 NIATYLWILSNRKTEERRGK 421
           ++   L     RK  E  G 
Sbjct: 341 DVVVDLLFFRKRKMGEVEGD 360


>gi|218296494|ref|ZP_03497222.1| hypothetical protein TaqDRAFT_3792 [Thermus aquaticus Y51MC23]
 gi|218243036|gb|EED09568.1| hypothetical protein TaqDRAFT_3792 [Thermus aquaticus Y51MC23]
          Length = 1053

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 50/227 (22%)

Query: 37  PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAG--YSFYNTSEYSLSTLGS- 93
           PF  LR             R  +   G + +       V    Y+FY+T  +  S L   
Sbjct: 179 PFRFLR-------NKYEEARRLWGPKGTAKVAEAFLRGVDEWFYAFYDTELFQDSFLEHL 231

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
                NLE ++ +     + I     + +T  +    GLL            +   + + 
Sbjct: 232 EQDPKNLEDFLLA----MEEILGFGAWQATFGQ----GLL----------HYNYRAIDED 273

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP------------------D 195
           V    YE  +    ++  +    + TP  +  L   + ++                   D
Sbjct: 274 VFGKAYETFL----AQGRKEGGIYYTPSSLTALMAKMAVEETLWPRARELDRALGEERYD 329

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           +A  +          DP  G+G FL   +  V +  ++ +       
Sbjct: 330 EAEARARDLTQVAFLDPAAGSGSFLVKILREVVEVYAYLEERTRWAL 376


>gi|189234369|ref|XP_974411.2| PREDICTED: similar to CG1074 CG1074-PA [Tribolium castaneum]
          Length = 464

 Score = 41.1 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 62/204 (30%), Gaps = 31/204 (15%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRVM-----SNIYEHLIRRFGSEVSEGAEDFMTP 180
           +L+   +     + +      P   P  V      +N    LIR+   +  +   +    
Sbjct: 139 KLKDPDVCLHYIEYYGTRANDPPENPYDVFFGRWVTNGLRQLIRKLSLKTRKFIGNTSMD 198

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--------VADCGS 232
             +  L        D  +          + DP  G+G  L  A           +     
Sbjct: 199 PQLSLLMANQAQVKDGDI----------VLDPFVGSGSLLVAAAEFGGFVLGGDIDYLML 248

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H +  P  +   +    E+     A M    L+      L  +    S+  +D      F
Sbjct: 249 HARTRPSRIKQKERAADESI---KANMEQYNLQHKYLDVLIND--FASSFWRD---DVEF 300

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH 316
              +++PP+G +   ++    KE+
Sbjct: 301 DSIITDPPYGIREATERVGTSKEN 324


>gi|308184259|ref|YP_003928392.1| type II adenine specific methyltransferase [Helicobacter pylori
           SJM180]
 gi|308060179|gb|ADO02075.1| type II adenine specific methyltransferase [Helicobacter pylori
           SJM180]
          Length = 545

 Score = 41.1 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 43/235 (18%)

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178
            +L K     L  +  +   I  +   + +      + + YE       +        + 
Sbjct: 58  NKLNKYANKSLKGVHNHQELILKYLQILENSSDLEKLGSYYEE---ELSNTTRNLEGIYY 114

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V     L   P D    ++        DP  G+G F+  A+              
Sbjct: 115 TPNKIVE---QLFTLPKDFDISQA-----IFCDPAVGSGNFIMHALKL---------GFK 157

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +   +G + +    A+       +R++     D   NI Q         T  +F    +N
Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTN 209

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+GKK+ +++    +  K          L +  D + LF +   N L+   + G
Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFIASLNYLKENAHLG 255


>gi|315930742|gb|EFV09752.1| type II restriction-modification enzyme domain protein
           [Campylobacter jejuni subsp. jejuni 305]
          Length = 88

 Score = 41.1 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
           ++E  +++   +       F TP  +       L  P   +  ++   +R + D  CG G
Sbjct: 1   LFELFLQKGMKQ---DEGQFFTPIQICEFIMYSL--PLHEMLSKNSKALR-VVDYACGAG 54

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPH 243
            FL    N +    +  ++       
Sbjct: 55  HFLNTYANELKRYLTEDELKEHYKIF 80


>gi|320095082|ref|ZP_08026791.1| hypothetical protein HMPREF9005_1403 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977949|gb|EFW09583.1| hypothetical protein HMPREF9005_1403 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 1245

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI- 239
           RD      A +   +D            + DP CG+G  LT A + +         P   
Sbjct: 266 RDRFDYLVAPVPGQEDQGMGIGDPKDFRVIDPACGSGHMLTYAFDVLWQMYVEAGYPKRR 325

Query: 240 -------LVPHGQELEPETHAVCVAGMLIRRLESDPR 269
                      G E++     +    ++++ +E DP 
Sbjct: 326 IAAAILDNNLFGAEIDARAVQLASFALMMKAVEHDPG 362



 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 66/225 (29%), Gaps = 28/225 (12%)

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
               R+   ++NPP+    +      E   ++    R             +F+ H     
Sbjct: 484 LEDSRYTTMVANPPYLVSKKFGDGLKEYARQSYPDSRQDLAT--------MFMQHALTFT 535

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
               + G           L +    S     R  LL+N  I++I  L   L     +   
Sbjct: 536 RKRASIGT--------LTLNSWMLTSSFERFRIRLLKNASIQSIAMLGRGL-AGIQLDFC 586

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRI----INDDQRRQILDIYVSRENG 462
             +  N      R  ++ I A++  TS  N  + +R+     N      I   Y      
Sbjct: 587 ATVFWNACPRSDRT-IRFITASEPATSPSNPIRIQRLQEAAQNPKSSDNIEVTYSRITRM 645

Query: 463 KFSRMLDYRT------FGYRRIKVLRPLRMSFILDKTGLARLEAD 501
             S  L   +      F     +V RP +     D     RL  +
Sbjct: 646 PRSAFLHSISDQILEGFKTPLAEVARPRQGLATADNERFLRLWFE 690


>gi|325981710|ref|YP_004294112.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nitrosomonas sp. AL212]
 gi|325531229|gb|ADZ25950.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Nitrosomonas sp. AL212]
          Length = 278

 Score = 41.1 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 35/168 (20%)

Query: 161 HLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
           +LI +  F     +  E  + PR    L     L+               + D   G+G 
Sbjct: 68  YLIGKRAFFDLTFKVTEAVLIPRPETELLVEWALE------LIPSQKFCKVLDLGTGSGA 121

Query: 219 FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
                  H           P       +L P    VC +         +     + N+ +
Sbjct: 122 IGISIAKH----------RPQSQVIAVDLSPAAIDVCQSN-------VEILEVANLNVIR 164

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
           G+    D  +G++F   +SNPP+  +        +  H      RF P
Sbjct: 165 GN--WFDELSGEKFDLIVSNPPYVAE--------DDPHLQQGDLRFEP 202


>gi|78356527|ref|YP_387976.1| heptosyltransferase family protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218932|gb|ABB38281.1| heptosyltransferase family protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 344

 Score = 41.1 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 628 IGRVGYEINF-NRFFYQYQPSR---KLQDIDAELKGVEA 662
             R+GY+  F NR+FY +   R    +++I   L  +  
Sbjct: 104 KTRIGYDRPFLNRYFYTHTVPRCFDSMEEI-ERLLQLVK 141


>gi|194743660|ref|XP_001954318.1| GF18217 [Drosophila ananassae]
 gi|190627355|gb|EDV42879.1| GF18217 [Drosophila ananassae]
          Length = 486

 Score = 41.1 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 13/203 (6%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     +  +  L          ++DP  GTG  L
Sbjct: 181 HLIKELSLKQRKFIGNTSMDAQLSLLMANQAMVQEGDL----------VFDPFVGTGSLL 230

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 231 VSAAKWGGYVLGADIDYMMVHARCRPSRISQKIREKDESIRANLKQYGCADRYMDVVVAD 290

Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             S         F   +++PP+G +   +K   +   K+          P  S  S+  L
Sbjct: 291 -FSNPLWHPRISFDCIITDPPYGIREATEKVDAKANSKDSTRTDDMVHYPSTSHYSLQSL 349

Query: 340 M-HLANKLELPPNGGGRAAIVLS 361
              L          GGR    L 
Sbjct: 350 YGDLLEFAAKHLRLGGRLVCWLP 372


>gi|332673306|gb|AEE70123.1| adenine specific DNA methyltransferase [Helicobacter pylori 83]
          Length = 545

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 60/172 (34%), Gaps = 28/172 (16%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
               D   NI Q         T  +F    +NPP+GKK+ +++    K+H N
Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKFNQNQKENFKQHFN 229


>gi|325299628|ref|YP_004259545.1| helicase domain-containing protein [Bacteroides salanitronis DSM
           18170]
 gi|324319181|gb|ADY37072.1| helicase domain protein [Bacteroides salanitronis DSM 18170]
          Length = 1943

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++   ++L   T        ++R L  D +       +     +        F   
Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D +      K+G  GR                 +   K       GG 
Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRNGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 R--KTEERRGKVQLI 425
              K E  + +  + 
Sbjct: 297 NLSKKEMSQDERLMT 311


>gi|256840942|ref|ZP_05546450.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738214|gb|EEU51540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1943

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 79/255 (30%), Gaps = 52/255 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPTRMLEPSAGVGVFV--------DSVLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++   ++L   T        ++R L  D +       +     +        F   
Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDKKTRTCGFEKIERPFNN------YFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D +      K+G  GR                 +   K       GG 
Sbjct: 194 MSNIPFGDIAVFDAEF----EKSGSFGRRS--------AQKAIHNYFFLKGLDAVRNGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSSKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 R--KTEERRGKVQLI 425
              K E  + +  + 
Sbjct: 297 NLSKKEMSQDERLMT 311


>gi|195343429|ref|XP_002038300.1| GM10758 [Drosophila sechellia]
 gi|194133321|gb|EDW54837.1| GM10758 [Drosophila sechellia]
          Length = 488

 Score = 41.1 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 52/200 (26%), Gaps = 13/200 (6%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     +     L          ++DP  GTG  L
Sbjct: 180 HLIKELSLKHRKFIGNTSMDAQLSLLMANQAMVRKGDL----------VFDPFVGTGSLL 229

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 230 VSAAKWGGYVLGADIDYMMVHARCRPSRITQKVREKDESIRANLQQYGCADRYMDVVVAD 289

Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             S         F   +++PP+G +   +K   +   K           P  S  S+  L
Sbjct: 290 -FSNPVWHPRISFDCIITDPPYGIREATEKVEKKASAKANTRSESMVHYPSTSHYSLQSL 348

Query: 340 M-HLANKLELPPNGGGRAAI 358
              L          GGR   
Sbjct: 349 YGDLLEFSAKHLRLGGRLVC 368


>gi|193214047|ref|YP_001995246.1| Eco57I restriction endonuclease [Chloroherpeton thalassium ATCC
           35110]
 gi|193087524|gb|ACF12799.1| Eco57I restriction endonuclease [Chloroherpeton thalassium ATCC
           35110]
          Length = 401

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 65/247 (26%), Gaps = 50/247 (20%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
             +      TP +V+    +L         K        + +P CG   FL         
Sbjct: 3   TKKALGAVSTPPEVIRFMLSLFSPTKTDSLK--------VLEPACGDAPFLQAFQE---- 50

Query: 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDL 286
                K        G E + ET                       N     T   L  D 
Sbjct: 51  -----KFGDKHALFGVEYDAETLR----------------PPALPNFHFEQTDFLLWDD- 88

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANK 345
              ++F   L NPP+G   ++    +          R               F+     +
Sbjct: 89  --ERKFDLILGNPPYGIIGDRSHYPIYTFKDMKAAYRQRSETWHGKYNIYGAFIEQAVKR 146

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIAT 405
           L    + G    +V S+  L           +R++L E+  +  +  L   +F    +  
Sbjct: 147 L---GDAGELIFVVPSTWMLL-----QDFKLLRKFLAESGELH-VYYL-GRIFPGVQVTA 196

Query: 406 YLWILSN 412
            +  L  
Sbjct: 197 VVIHLKK 203


>gi|295104582|emb|CBL02126.1| DNA methylase [Faecalibacterium prausnitzii SL3/3]
          Length = 1551

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 94/342 (27%), Gaps = 77/342 (22%)

Query: 105 ASFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI-YEH 161
             ++ N +AI   F           E+  +L +        +       +        + 
Sbjct: 498 QKYARNIEAIRTLFKLEEEHRGATAEEQQVLSQYVGWGGLADAFDPNKENWSAEYTQLKE 557

Query: 162 LIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           L+    + +  +       T   V+               +        + +P+ G G F
Sbjct: 558 LLSEDEYAAARASTLNAHYTGPTVIR--------GIYDAVERMGFQSGNILEPSMGVGNF 609

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSK 274
                  +AD             +G EL+  T  +       A + +   E+  RRD   
Sbjct: 610 FGMLPTSMAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF-- 657

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                            +   + N PFG+    DK      +K G            S  
Sbjct: 658 -----------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIH 685

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +  F   +          GG  A V            S +S  R+ + E   +   + LP
Sbjct: 686 NYFFAKAI-----DQIRPGGVIAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLP 735

Query: 395 TDLF---FRTNIATYLWILSNRKTEERRG--KVQLINATDLW 431
            + F     T++ + +  L  R          VQL    D +
Sbjct: 736 NNAFRANAGTDVVSDIIFLQKRDRPADIEPAWVQLGKTEDGF 777


>gi|213961903|ref|ZP_03390169.1| hypothetical protein CAPSP0001_2286 [Capnocytophaga sputigena
           Capno]
 gi|213955692|gb|EEB67008.1| hypothetical protein CAPSP0001_2286 [Capnocytophaga sputigena
           Capno]
          Length = 1050

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 71/233 (30%), Gaps = 62/233 (26%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKA---GLLYKICK-NFSGIELHPDT----VPDRV 154
           Y+         +FE        +R        LL  + + NF+  E  P+     V   +
Sbjct: 328 YLNG------GLFERDALDEKTSRFPAKYFESLLTMLSQYNFTIDENDPNDAEVGVDPEM 381

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT---------------------ALLLD 193
           +  I+E+L+     E ++    F TP+++V                           +  
Sbjct: 382 LGRIFENLL-----EDNKDKGAFYTPKEIVQYMCRESLIAYLQTDQKEDDKERIRQFVTT 436

Query: 194 PDDALFKESPGMIR------TLYDPTCGTGGFLTDAM------------NHVADCGSHHK 235
            D  L  E    I        + DP  G+G F    +            N V       +
Sbjct: 437 HDVDLLGELKEEIEQKLIDVKICDPAIGSGAFPMGLLRELFFCRSAIEPNIVEKAADIKR 496

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSK 284
                  +G ++E     +      +  +  +   ++  N    I QG++L +
Sbjct: 497 HIIQNNIYGVDIERGAVEIARLRFWLALIVDEKSPEVLPNLDFKIMQGNSLLE 549


>gi|160902977|ref|YP_001568558.1| hypothetical protein Pmob_1534 [Petrotoga mobilis SJ95]
 gi|160360621|gb|ABX32235.1| conserved hypothetical protein [Petrotoga mobilis SJ95]
          Length = 1120

 Score = 41.1 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 59/176 (33%), Gaps = 30/176 (17%)

Query: 30  DFGKV------ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           +FG        IL            E  R+   +    F   +  L       G  F   
Sbjct: 282 EFGDYQNFYNDILEPLFY-------EALRTDRSDADHYFSRFDCKLPFL---NGGLFDPI 331

Query: 84  SEYSLSTLG---STNTRNNLESYIA-SFSDNAKAIFEDFDFS-STIARLEKA-----GLL 133
           + Y+   +      +  +N++       SD    IF+ F+F+ +    LEK       LL
Sbjct: 332 NNYNWVEIDIMIPNDLFSNIDKTQEIDQSDGILDIFDRFNFTVNEEEPLEKEVALDPELL 391

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
            KI +  + I         +V+      L  +F    ++    + TPR++VH    
Sbjct: 392 GKIYEKLNAIREDNFDEYVKVLKAGKRSLETKF----NKEYGVYYTPREIVHYMCQ 443


>gi|260583302|ref|ZP_05851077.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Haemophilus influenzae NT127]
 gi|260093662|gb|EEW77575.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Haemophilus influenzae NT127]
          Length = 292

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 68/214 (31%), Gaps = 34/214 (15%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR    +     L       +E+P     + D   GTG       + +A       IP  
Sbjct: 94  PRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELAPICQKRHIPLE 152

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G +L  +  A+  +                 N+Q   +   D  TG +F   +SNP
Sbjct: 153 --IIGVDLMSDVVALAQSN----------AERNQLNVQFLQSCWFDNITG-KFDLIVSNP 199

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAI 358
           P+           + EH +    RF P    +++G     L H+        N  G    
Sbjct: 200 PYI--------DAQDEHLHQGDVRFEPLSALVANGEGYADLRHIIELASSYLNSNGVL-- 249

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
                 L       GE ++R   LEN    +E +
Sbjct: 250 ------LLEHGWQQGE-KVRSIFLENYWEMVETV 276


>gi|258648305|ref|ZP_05735774.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
 gi|260851592|gb|EEX71461.1| putative DNA methylase [Prevotella tannerae ATCC 51259]
          Length = 2065

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGVFTETFAKNAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRTYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|172055088|ref|YP_001806415.1| hypothetical protein cce_5003 [Cyanothece sp. ATCC 51142]
 gi|171701369|gb|ACB54349.1| hypothetical protein cce_5003 [Cyanothece sp. ATCC 51142]
          Length = 1270

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----------------ILVPHGQELEPET 251
            + DP CG+G FL  A   +    +  +                       +G +  P +
Sbjct: 475 KVCDPACGSGHFLLAAARRIGKELARIRTGEVHPSPEPLSQAVRDVIQHCIYGVDYNPLS 534

Query: 252 HAVCVAGMLIRRL-ESDPRRDLSKNIQQGSTL 282
             +C   + I    +  P   L   I+ G++L
Sbjct: 535 VDLCKVALWIEGFCKGYPLNFLDHRIKCGNSL 566


>gi|2769574|emb|CAA73269.1| methylase [Lactococcus lactis subsp. cremoris]
          Length = 230

 Score = 41.1 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 46/163 (28%), Gaps = 34/163 (20%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
           E LI+    E  +   +  TP+ +V     +     + + +    +  T  +P  G G F
Sbjct: 4   EKLIK--SKERVQQHGEVFTPQWMVKKMLDV-----EGIKQACENIDATFLEPAAGDGNF 56

Query: 220 LTDAMNHVADCGSHHKIPPIL---------VPHGQELEPETHAVCVAGMLIRRLESDPRR 270
           L   +       +                   +G E   +   +  + MLI  L      
Sbjct: 57  LVAILERKLKVVTEQFSEGHWGTKSLFALSSIYGIEFLADNLEIARSRMLIHYLNWYEEI 116

Query: 271 DLSK-----------------NIQQGSTLSKDLFTGKRFHYCL 296
              +                 NI +G+TL+K            
Sbjct: 117 FQEQLHSTTDLYKSAMYIIRRNIVRGNTLTK-KHPDYDIPIMF 158


>gi|1709169|sp|P52284|MTR1_PBCVX RecName: Full=Modification methylase CviRI; Short=M.CviRI; AltName:
           Full=Adenine-specific methyltransferase CviRI
 gi|281234|pir||S26851 site-specific DNA-methyltransferase (adenine-specific) (EC
           2.1.1.72) CviRI - Chlorella virus CV-XZ6E
 gi|323329|gb|AAA42900.1| TGCA adenine methyltransferase [Chlorella virus]
          Length = 379

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 61/255 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           +R   +       F TP+D+      ++ +               + +PTCGTG F++D 
Sbjct: 13  KRLSKKERSDGGVFFTPKDIR----DIVFEELGDF------EPTNILEPTCGTGEFISDC 62

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQGSTL 282
                      K+       G E++P +  +                D SKN I     +
Sbjct: 63  R----------KVYKNSRIIGVEIDPRSAELAR--------------DGSKNEIIVHDFM 98

Query: 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
           + D  T ++F   + NPP+  +    K                     +   S + +  L
Sbjct: 99  TWD--TDEKFDLIIGNPPYFTRPTGFKHDPSV----------------VKCRSNICIEVL 140

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV--ALPTDLFFR 400
              +       G  A+VL  S L +              L  D ++ +   A+  + F  
Sbjct: 141 HKCITRHLADNGMLAMVLPVSILNSKFYTPTID------LITDTMDVVSARAIKKNNFMG 194

Query: 401 TNIATYLWILSNRKT 415
           TN+   ++I+  R  
Sbjct: 195 TNVRVMVFIIRKRTP 209


>gi|332637184|ref|ZP_08416047.1| helicase A859L [Weissella cibaria KACC 11862]
          Length = 1084

 Score = 41.1 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 46/273 (16%)

Query: 48   LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTL-------GSTNTRNNL 100
            LE  + A   K      +       V          ++ +  T+         T   +++
Sbjct: 797  LEEAKVAYEAKQQEIEQNFRKEVEIVVAEKTK--EVAKDTAETILKKSEEKKKTTVEDDI 854

Query: 101  ESYIASFSDNAKAIFEDFD--------FSSTIARLEKAGLLYKICKNFSGIELHPDTVPD 152
             + +  F+    +    +         F +TI       +     + F  +    +   +
Sbjct: 855  RARLRGFARTIPSFLMAYGTPETTLASFDTTIKDAVFQEVTGITLEQFRTLRDTYNFFDE 914

Query: 153  RVMSNIYEHLIRR-------FGSEVSEG---------AEDFMTPRDVVHLATALLLDPDD 196
             V     +  + +       F  +  E               TP+ VV +    L++ D 
Sbjct: 915  VVFDQSIQEFLNKRVELADYFNDDNEEDIFDYIPPQQTNQIFTPKKVVKIMVDELMEEDP 974

Query: 197  ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELE 248
             +FK+     +T  D    +G ++T+ +  + D             K        G    
Sbjct: 975  EVFKD---PNKTFADLYMKSGLYITEIVKRLYDGLEEQIPDDSSRLKHILENQVFGFAPT 1031

Query: 249  PETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
               + +      I   +SD +     +I    T
Sbjct: 1032 EIIYNIARN--FIFGFDSDAKNINDSHIVYLDT 1062


>gi|282881043|ref|ZP_06289733.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305119|gb|EFA97189.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 2064

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGF---LTDAMNHVADCGSH---HKIPPILVPHG 244
           ++         +   IR   DP+ G G F      +   V          +I   L P+G
Sbjct: 111 IVSAIADALNVTDVQIRRCLDPSAGMGAFTETFAKSAGMVDAMDKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELE--------------EKDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MIYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|188997570|ref|YP_001931821.1| conserved hypothetical protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932637|gb|ACD67267.1| conserved hypothetical protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 1209

 Score = 41.1 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 36/183 (19%)

Query: 52  RSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNA 111
           +S  R +          +    K     F N   +    L           YI  FS N 
Sbjct: 289 KSLYRYENKFLISKEEVISELFK--NIPFINGGLFDC--LDKDKI------YIDGFSRNE 338

Query: 112 KA---IFEDFDFSSTIAR-------LEKAGLLYKICKNFSGIELHPDTVPDRV------- 154
           K    I ++  FS            L K   +  +           D             
Sbjct: 339 KKQAKISDELFFSQEEKTVDLSKYGLGKNAKVRGLIDILKSYNFTTDEATPIDQEIALDP 398

Query: 155 --MSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
             +  ++E+L+  +  E +    +    + TPR++V        +      K        
Sbjct: 399 ELLGKVFENLLASYNPETNTTARKATGSYYTPREIVDYMVE---ESLREYLKTKVPEAEN 455

Query: 209 LYD 211
           ++D
Sbjct: 456 IFD 458


>gi|307945932|ref|ZP_07661267.1| Eco57I restriction endonuclease [Roseibium sp. TrichSKD4]
 gi|307769596|gb|EFO28822.1| Eco57I restriction endonuclease [Roseibium sp. TrichSKD4]
          Length = 1113

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 33/162 (20%)

Query: 28  HTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87
             ++G+   P          LEP               +        + G  F     Y 
Sbjct: 277 RGEYGEY--P----NFFNDVLEPLFYEALATERHDNYYDHLKCRIPFLNGGLFEAIRNYD 330

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
                       + + I   +   + IF+ FD  +   R ++                  
Sbjct: 331 W-----------VNTDILLDNAIFQEIFDIFDLYNFTVREDE-------------PLDKE 366

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             V   ++  ++E+LI        +G+  + TPR++VH    
Sbjct: 367 VAVDPEMLGKVFENLI---PENERKGSGTYYTPREIVHYMCQ 405


>gi|295396904|ref|ZP_06807028.1| adenine-specific methyltransferase [Aerococcus viridans ATCC 11563]
 gi|294974838|gb|EFG50541.1| adenine-specific methyltransferase [Aerococcus viridans ATCC 11563]
          Length = 344

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 91/321 (28%), Gaps = 55/321 (17%)

Query: 111 AKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL-------- 162
            +   E     +    L+    L         I+  P       +  IY ++        
Sbjct: 20  IQEALEFSYLEALFETLQN---LAD--GEVQQIDQRPSDEEAEQLREIYSNINLQEYEAE 74

Query: 163 -IRR---FGSEVSEGAED-----FMTPRDVVHLATALL--LDPDDALFKESPGMIRTLYD 211
            IR+   F     E A+       MTP  +  L       L     L  ++     T +D
Sbjct: 75  DIRKAVQFAFIEGEKADQLQANYHMTPEAIAVLMGYFATKLVDHGHLADKADHTEITFFD 134

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
            T GTG       N +   G   +        G + +    ++      ++ +       
Sbjct: 135 STMGTGNLYAIIYNALKASGYKIQG------FGYDNDDLMLSIADVSTRLQDI------- 181

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
              N+  G +L             + + P G     +        KN E G+        
Sbjct: 182 -PANLYLGDSLQN--LIVPPSDLIVGDLPLGYYPVDEVADTYSSAKNREEGQHAFVH--- 235

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
                L +      L+    G     IV +            E+     + E+   +A++
Sbjct: 236 ----YLMVEQGLRYLKPNGWG---IYIVPAGLIQDENIKTLIEA-----IGEHGYFQALL 283

Query: 392 ALPTDLFFRTNIATYLWILSN 412
           +LP++LF        + ++  
Sbjct: 284 SLPSNLFNNEKSRKAILLVQK 304


>gi|294791107|ref|ZP_06756265.1| putative Helicase [Scardovia inopinata F0304]
 gi|294459004|gb|EFG27357.1| putative Helicase [Scardovia inopinata F0304]
          Length = 1805

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 1/103 (0%)

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-KESPGMIRTLYDPTCG 215
            N+YE   R      ++      TP ++V+    L+ +     F K       T+ DP  G
Sbjct: 929  NLYESFFRTAFKSDADKLGIVYTPLEIVNYILHLVDNKLTEHFGKHLEDDRVTILDPFTG 988

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
            TG F+ + +       +  +          E+    + + +  
Sbjct: 989  TGTFIVELIRSGLISPNKLQRKYRSEIFANEIMLLAYYIAMVN 1031


>gi|190347713|gb|EDK40042.2| hypothetical protein PGUG_04140 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 256

 Score = 41.1 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 29/183 (15%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--I 236
           TP  +      L+        KE     R + D  CG GG      ++    G+      
Sbjct: 52  TPEALAIFIARLV--------KELLPNARKILDVCCGGGGNAIQFAHYFPSVGAVDISPN 103

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 H   +      +       +  + +  ++ +  I  G  +       + F +  
Sbjct: 104 NLQCTVHNAGIYGVLDRI-----WTQLGDWNELQNKTDWIPYGIRMKNKKSKNEMFDFVF 158

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGEL------------GRFGPGLPKISDGSMLFLMHLAN 344
            +PP+G    K     + E                    FG  LP+ S+  +  +  +  
Sbjct: 159 CSPPWGGPSYKKSGQFDLEQMKPFNLETLCGQMRQFSSSFGFLLPRQSN--LDQIRDVTE 216

Query: 345 KLE 347
           KL+
Sbjct: 217 KLK 219


>gi|294647085|ref|ZP_06724693.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
 gi|292637571|gb|EFF55981.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
          Length = 1464

 Score = 41.1 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|289424058|ref|ZP_06425844.1| methyltransferase [Peptostreptococcus anaerobius 653-L]
 gi|289155483|gb|EFD04162.1| methyltransferase [Peptostreptococcus anaerobius 653-L]
          Length = 382

 Score = 41.1 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 36/148 (24%)

Query: 204 GMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPIL----------- 240
              R L DP CG+G  L +A               +++                      
Sbjct: 192 RPGRILVDPMCGSGTILIEAAMIGMNMAPGMNREFISEKWRTIDKKIWWDVRRDAFDQLN 251

Query: 241 -----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +++PE+  +      I  ++      ++          KD  + K +   
Sbjct: 252 DNEDFKIYGYDIDPESIKIAKHNAEIAGVDQYIDFAVAD--------VKDFKSDKEYGMI 303

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           ++NPP+G++ E ++       + G   R
Sbjct: 304 ITNPPYGERLEDEEAVKILYKEMGYAFR 331


>gi|282877664|ref|ZP_06286479.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
 gi|281300236|gb|EFA92590.1| N-6 DNA Methylase [Prevotella buccalis ATCC 35310]
          Length = 1433

 Score = 41.1 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|210062467|ref|YP_002300484.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|134270009|emb|CAL91882.1| putative methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 262

 Score = 41.1 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + + ++E L      +  +    F+TP D+  L T ++                 + D 
Sbjct: 112 DIFNELFEDLF--LTGKKGDSFGQFLTPTDISELLTDIVYTTSKDK--------YKIADS 161

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---LEPETHAVCVAGMLIRRLESDPR 269
             GTG  +   +  +        I  + + +  +   +     A  +  M+   L+    
Sbjct: 162 CAGTGSLIFPLIKRIFFKEGFEGIQKVELFYNDKDSFVSQLFIAQILTNMIYHNLDFKSL 221

Query: 270 RDLSKN-IQQGST 281
                N I +  T
Sbjct: 222 HVYIGNAITEYDT 234


>gi|227504932|ref|ZP_03934981.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC 6940]
 gi|227198441|gb|EEI78489.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC 6940]
          Length = 1243

 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 70/287 (24%), Gaps = 40/287 (13%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                D    S    L K    Y+        E+   +   +V+ ++YE   R+   + SE
Sbjct: 838  DALSDAKLESETESLTK---FYESV-RVRASEVSSASGKQQVIKDLYERFFRKAFKKQSE 893

Query: 173  GAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V                K        + DP  GTG F+   +       
Sbjct: 894  ALGIVYTPVEIVDFILRSADQISRWHFGKGLTDEGVHILDPFTGTGTFMVRLLQSGLIEP 953

Query: 232  SHHKIPPILVPHGQELE-----------PETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
                       H  E+              T+    A    R  E +P      +I    
Sbjct: 954  DDLVRKYATELHATEIMLLAYYVAAVNIETTYNALQAERAQRNGEPEPEYVPFDSIALAD 1013

Query: 281  TL----SKDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
            T       D+   K F               +  + NPP+        D  +        
Sbjct: 1014 TFQIHEEGDILDLKVFKENNAAIQRQIDAPINIIIGNPPYSVGQTSANDNNQNLKYPTLD 1073

Query: 322  GR----FGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSS 363
             R    F       +  S     +             G  A V +  
Sbjct: 1074 KRIEETFVANSTATNKNSLYDSYLRAFRWSIDRLGTHGVMAFVSNGG 1120


>gi|270001932|gb|EEZ98379.1| hypothetical protein TcasGA2_TC000838 [Tribolium castaneum]
          Length = 359

 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 31/204 (15%)

Query: 126 RLEKAGLLYKICKNFSGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +L+   +     + +      P   P  V     ++N    LIR+   +  +   +    
Sbjct: 34  KLKDPDVCLHYIEYYGTRANDPPENPYDVFFGRWIANGLRQLIRKLSLKTRKFIGNTSMD 93

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH--------VADCGS 232
             +  L        D  +          + DP  G+G  L  A           +     
Sbjct: 94  PQLSLLMANQAQVKDGDI----------VLDPFVGSGSLLVAAAEFGGFVLGGDIDYLML 143

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
           H +  P  +   +    E+     A M    L+      L  +    S+  +D      F
Sbjct: 144 HARTRPSRIKQKERAADESI---KANMEQYNLQHKYLDVLIND--FASSFWRD---DVEF 195

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEH 316
              +++PP+G +   ++    KE+
Sbjct: 196 DSIITDPPYGIREATERVGTSKEN 219


>gi|218961241|ref|YP_001741016.1| hypothetical protein CLOAM0937 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729898|emb|CAO80810.1| conserved hypothetical protein [Candidatus Cloacamonas
           acidaminovorans]
          Length = 1251

 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 70/274 (25%), Gaps = 80/274 (29%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDL---------ESFVKVAG 77
             + +   IL       L   +   +   R+                     ES      
Sbjct: 300 DSSYYKA-ILQNLFFATLNTEMNKDKENSRKFRREIKSKMNPDFNVHTLFRYESLFHHPE 358

Query: 78  YS----FYNTSEYS---LSTLGSTNTRNNLESYI--ASFSDNAKAIFE------------ 116
                 F N    +      L +  T+NN  +YI    FSD    + +            
Sbjct: 359 QVIDEYFANIPFLNGGLFECLDTEITQNNNNNYIRIDGFSDRPDNVLKVPDELFFSDKEQ 418

Query: 117 DFDFSSTIARLEKAGLLYKICK-----NFSGIELHPDTV----PDRVMSNIYEHLIRRFG 167
           D D +       K   +  +        F+  E  P          ++  ++E+L+  + 
Sbjct: 419 DIDLNEFYGTTNKRYQVCGLLNILNSYKFTVTENTPIEEEVALDPELLGRVFENLLASYN 478

Query: 168 SEVS----EGAEDFMTPRDVVHLATA----------------------------LLLDPD 195
            E           F TPR++V                                 LL   D
Sbjct: 479 PETKTTARHETGSFYTPREIVDYMVDESLIAYLLNELPHSTKAEAEDSELKLRLLLYYTD 538

Query: 196 DALFKESPGMIR--------TLYDPTCGTGGFLT 221
           +        + +         + DP CG+G FL 
Sbjct: 539 EDHLFNPEEVDKLIYAIDNLKIIDPACGSGAFLM 572


>gi|121608713|ref|YP_996520.1| putative DNA methylase [Verminephrobacter eiseniae EF01-2]
 gi|121553353|gb|ABM57502.1| putative DNA methylase [Verminephrobacter eiseniae EF01-2]
          Length = 928

 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 58/240 (24%), Gaps = 68/240 (28%)

Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPDDALFKESPGMIRT------- 208
           +I+  +I+    +   GA     T    +      L   D        G           
Sbjct: 284 DIFGSMIQAVADDEERGALGMHYTSVPNILKVLNPLFLDDLRAQLAEAGENERKLLNLRK 343

Query: 209 ------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA--------- 253
                 ++DP CG+G FL  A   + +  +           G E+               
Sbjct: 344 RMARIRVFDPACGSGNFLVIAYKKMREIEAEINRRRGEPHWGSEIPLTNFRGIELRDFPA 403

Query: 254 -VCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDL------------- 286
            +    ++I   + D      K              I  G+ L  D              
Sbjct: 404 EIARLALIIAEFQCDVLYRGQKEALAEFLPLDAQNWIICGNALRLDWLSVCPSTGTGAKL 463

Query: 287 ----------------FTGKRFH-YCLSNPPF-GKKWEKDKDAVEKEHKNGELGRFGPGL 328
                           F  +    Y   NPP+ G  W+  +   + +       R    L
Sbjct: 464 VADDLFGMPLDQSEIDFKNEGGETYICGNPPYLGSTWQSKEQKNDLKAIFDHYTRNWKSL 523


>gi|53711433|ref|YP_097425.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|154490868|ref|ZP_02030809.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC
           43184]
 gi|189461180|ref|ZP_03009965.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136]
 gi|189464476|ref|ZP_03013261.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM
           17393]
 gi|198277329|ref|ZP_03209860.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135]
 gi|218131441|ref|ZP_03460245.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697]
 gi|237713347|ref|ZP_04543828.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|255012137|ref|ZP_05284263.1| putative DNA methylase [Bacteroides fragilis 3_1_12]
 gi|262406723|ref|ZP_06083272.1| BmhA [Bacteroides sp. 2_1_22]
 gi|298377030|ref|ZP_06986984.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298483550|ref|ZP_07001726.1| DNA methylase [Bacteroides sp. D22]
 gi|313149979|ref|ZP_07812172.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|329960031|ref|ZP_08298527.1| helicase protein [Bacteroides fluxus YIT 12057]
 gi|46242803|gb|AAS83508.1| BmhA [Bacteroides fragilis]
 gi|52214298|dbj|BAD46891.1| putative DNA methylase [Bacteroides fragilis YCH46]
 gi|154088616|gb|EDN87660.1| hypothetical protein PARMER_00785 [Parabacteroides merdae ATCC
           43184]
 gi|189432094|gb|EDV01079.1| hypothetical protein BACCOP_01827 [Bacteroides coprocola DSM 17136]
 gi|189438266|gb|EDV07251.1| hypothetical protein BACINT_00818 [Bacteroides intestinalis DSM
           17393]
 gi|198269827|gb|EDY94097.1| hypothetical protein BACPLE_03541 [Bacteroides plebeius DSM 17135]
 gi|217986373|gb|EEC52710.1| hypothetical protein BACEGG_03059 [Bacteroides eggerthii DSM 20697]
 gi|229446586|gb|EEO52377.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355426|gb|EEZ04517.1| BmhA [Bacteroides sp. 2_1_22]
 gi|298266014|gb|EFI07673.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298270307|gb|EFI11892.1| DNA methylase [Bacteroides sp. D22]
 gi|313138746|gb|EFR56106.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313158596|gb|EFR57990.1| helicase C-terminal domain protein [Alistipes sp. HGB5]
 gi|328533165|gb|EGF59934.1| helicase protein [Bacteroides fluxus YIT 12057]
          Length = 1938

 Score = 41.1 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|317057869|ref|YP_004106336.1| DNA mismatch repair protein MutS domain-containing protein
            [Ruminococcus albus 7]
 gi|315450138|gb|ADU23702.1| DNA mismatch repair protein MutS domain protein [Ruminococcus albus
            7]
          Length = 3387

 Score = 41.1 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 62/257 (24%), Gaps = 58/257 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + + ++       T   ++               +        + +P+CG G FL  A
Sbjct: 1856 EEYNAALNSVVNAHFTSPVIIRKMYT--------ALENFGFKGGKVLEPSCGIGNFLGCA 1907

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                                G E++  T  +              +      IQ  +   
Sbjct: 1908 PT---------DKAANYQFTGVEIDSITGRIAK------------QLYPQAKIQV-TGFQ 1945

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                    F   + N PF      D+   +  H   +                       
Sbjct: 1946 NADVKDNYFDVVIGNVPFANYSVTDRKYNKSNHLIHDY--------------------FI 1985

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A++ SS  +    A     ++R  +     +   + LP   F     
Sbjct: 1986 LKSLDLTRAGGVVAVITSSGTMDKVSA-----KVRTEISNKAKLIGAIRLPDTAFEKNAG 2040

Query: 401  TNIATYLWILSNRKTEE 417
            TN    +  L  R    
Sbjct: 2041 TNAVADILFLQKRSEPN 2057


>gi|294807381|ref|ZP_06766187.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294445401|gb|EFG14062.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1938

 Score = 41.1 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|167762748|ref|ZP_02434875.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC
           43183]
 gi|167699088|gb|EDS15667.1| hypothetical protein BACSTE_01106 [Bacteroides stercoris ATCC
           43183]
          Length = 1938

 Score = 41.1 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|294776631|ref|ZP_06742100.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|294449546|gb|EFG18077.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 1937

 Score = 41.1 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|270295247|ref|ZP_06201448.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274494|gb|EFA20355.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1937

 Score = 40.7 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E  + +  + 
Sbjct: 295 QKNLSKKEMSQDERLMT 311


>gi|288802618|ref|ZP_06408056.1| DNA methylase [Prevotella melaninogenica D18]
 gi|288334768|gb|EFC73205.1| DNA methylase [Prevotella melaninogenica D18]
          Length = 2067

 Score = 40.7 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKSAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELEG--------------KDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG  A + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLAFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|268324192|emb|CBH37780.1| hypothetical protein BSM_12570 [uncultured archaeon]
          Length = 1141

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 83/308 (26%), Gaps = 79/308 (25%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
              ++ L      ++  + E  L +  S +  +         F+             +  
Sbjct: 235 LIFIKFL-----QSKGIIGEDILRYL-SEVKEDLLTPKLRQLFFGC--LDRPKDERFDID 286

Query: 98  NNLES--YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP-------D 148
              +   Y+         +         I    +A +L  + +     +          D
Sbjct: 287 ERFKDVPYLNGSLFVHTEVERK-----NIDYKVRAEILKTVLQFLDSFKFVHKEQLGNGD 341

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESP 203
           +V   ++  I+E   R   +   +G   + TP+ +    +       +++  + + K   
Sbjct: 342 SVDPEILGYIFE---RAMTARDRKGTGAYYTPKSITKYISENTIYPCIIEKTNEILKTEK 398

Query: 204 GMIRT-----------------------------LYDPTCGTGGFLTDAMNHVADCGSHH 234
           G   T                             + D  CG+G FL  A N +       
Sbjct: 399 GYKDTELIKDIEELFILPATTLKQIWEKIILKLRVLDNACGSGAFLLAAANILFWLNKKI 458

Query: 235 KIP--------------PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK------ 274
                             +   +G +L P    +    + +   +S     +        
Sbjct: 459 NDKIGAENPDTTLKIIILVNNLYGVDLNPNGIEIAKLRLWLWLADSYEPGYIKPLPNIDY 518

Query: 275 NIQQGSTL 282
           N++ G++L
Sbjct: 519 NLRVGNSL 526


>gi|13399509|pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
 gi|13399510|pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
          Length = 393

 Score = 40.7 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 53/189 (28%), Gaps = 44/189 (23%)

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP +VV    +L   P              + +P C  G FL                  
Sbjct: 3   TPPEVVDFMVSLAEAP----------RGGRVLEPACAHGPFLRAFREA---------HGT 43

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
                G E++P+   +                  ++ I     L +     + F   L N
Sbjct: 44  GYRFVGVEIDPKALDL---------------PPWAEGILADFLLWEPG---EAFDLILGN 85

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELPPNGGGRA 356
           PP+G   E  K  +    K  +              ++   FL      L+     GG  
Sbjct: 86  PPYGIVGEASKYPIHV-FKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP----GGVL 140

Query: 357 AIVLSSSPL 365
             V+ ++ L
Sbjct: 141 VFVVPATWL 149


>gi|221459938|ref|NP_651557.2| CG3339, isoform D [Drosophila melanogaster]
 gi|220903235|gb|AAF56699.3| CG3339, isoform D [Drosophila melanogaster]
          Length = 4689

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 37  PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
               + R    LE  +  + +    + GS + L +  + A     + S      L     
Sbjct: 467 GLLKINRTIAVLELFKQRMLDYKERYAGSQVLLPALSEGAAAVASSPSPDDQQQLWRFCH 526

Query: 97  RNNLESYIASFS---DNAKAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHPD 148
            +     +  FS      + +FE       + +LE  GL  KI      + F   ++  +
Sbjct: 527 EDVFGQTLDGFSLQLLELRQVFEAAVQFQQLEKLEVGGLRGKILTERVREIFGEFKVLFE 586

Query: 149 TVPDRVM 155
              +  +
Sbjct: 587 QWSNVDI 593


>gi|221459933|ref|NP_001036762.2| CG3339, isoform C [Drosophila melanogaster]
 gi|220903234|gb|ABI31211.2| CG3339, isoform C [Drosophila melanogaster]
          Length = 4842

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 37  PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
               + R    LE  +  + +    + GS + L +  + A     + S      L     
Sbjct: 467 GLLKINRTIAVLELFKQRMLDYKERYAGSQVLLPALSEGAAAVASSPSPDDQQQLWRFCH 526

Query: 97  RNNLESYIASFS---DNAKAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHPD 148
            +     +  FS      + +FE       + +LE  GL  KI      + F   ++  +
Sbjct: 527 EDVFGQTLDGFSLQLLELRQVFEAAVQFQQLEKLEVGGLRGKILTERVREIFGEFKVLFE 586

Query: 149 TVPDRVM 155
              +  +
Sbjct: 587 QWSNVDI 593


>gi|170078731|ref|YP_001735369.1| DNA methyltransferase [Synechococcus sp. PCC 7002]
 gi|169886400|gb|ACB00114.1| DNA methyltransferase [Synechococcus sp. PCC 7002]
          Length = 917

 Score = 40.7 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 52/207 (25%), Gaps = 47/207 (22%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLL-DPDDALFKESPGMIR------------TLYDPTC 214
            +         T    +      L  D     FK++ G                  DP C
Sbjct: 300 QQTRRNLGAHYTSEKNIQKVIKPLFLDELHEKFKKAKGSPTALKRLHDELGELHFLDPAC 359

Query: 215 GTGGFLTDAMNH--------VADCGSHHKIPPILVPH---------GQELEPETHAVCVA 257
           G G FL  +           + +     +    +            G E +     V   
Sbjct: 360 GCGNFLIISYRELRDLELLILKELYKKKEGFIDIRLFLKVDVDQFGGIEYDEFPARVAEV 419

Query: 258 GMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLF---TGKRFHYCLSNPPF 301
            M +   + + +                +  I  G+ L  D       ++ +Y L NPPF
Sbjct: 420 AMWLIDHQMNIKVSNEFGQYFVRLPLKKAARIVNGNALRIDWEEVIPKEKLNYILGNPPF 479

Query: 302 GKKWEKDKDAVEKEHKNGELGRFGPGL 328
               +        +  +      G G+
Sbjct: 480 -VGSKMMTKDQRADLLSVFESAKGAGV 505


>gi|315227037|ref|ZP_07868824.1| helicase [Parascardovia denticolens DSM 10105]
 gi|315119487|gb|EFT82620.1| helicase [Parascardovia denticolens DSM 10105]
          Length = 1673

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 33/265 (12%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMI 206
            D+    ++ ++Y     +     S+      TP  +V     +        F        
Sbjct: 891  DSNRQELIKDLYNDFFSKAFKATSQKLGIVYTPMQIVDYMLHVTDRVLKREFGCGLAEEG 950

Query: 207  RTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGM-LIRRL 264
              + DP  GTG ++ + ++          +       H  E+    + + V  +      
Sbjct: 951  VHILDPFAGTGSYMAELISDPELIPVDKLEHKYKYELHSNEILLLAYYIMVVNIEYAYHA 1010

Query: 265  ESDPRRDLSKNIQQGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKW 305
              D   +         T      +D    + F               H  + NPP+    
Sbjct: 1011 RMDGAYEPFTGAVLTDTFQMSEDEDTLDDRMFIGNSERVTEQQRAPIHVIIGNPPYSAGQ 1070

Query: 306  EKDKDAVEKEHKNGELGR----FGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIV 359
            +   D    EH      R    +   +  ++  S++  ++       +   N G     V
Sbjct: 1071 KSANDNNANEHYPRLENRIRETYSDSVKTVNKNSLMDSYIEAFRWASDRIQNEGVVC-FV 1129

Query: 360  LSSSPLFNGRAGSGESEIRRWLLEN 384
             ++  L    AG+G   +RR  +E 
Sbjct: 1130 SNAGWL-RSEAGAG---VRRCFVEE 1150


>gi|75907549|ref|YP_321845.1| hypothetical protein Ava_1326 [Anabaena variabilis ATCC 29413]
 gi|75701274|gb|ABA20950.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 1321

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 53/196 (27%), Gaps = 43/196 (21%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAM 224
           E    +    TPR +        L P      E P   +     + D   G+G FL +A 
Sbjct: 529 EERRRSGTHYTPRALTEPIVKETLRPVLEALGERPTPEQILALKVCDLAVGSGAFLVEAC 588

Query: 225 NHVADCGSHH---------------------KIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +A+                          ++      +G +  P    +    + +  
Sbjct: 589 RQLAEKLVEAWNQHGMISEVPSDEEPLLYGRRLVAQRCLYGVDKNPFAVNLAKLSLWLVT 648

Query: 264 L-ESDPRRDLSKNIQQGSTL-----------------SKDLFTGKRFHYCLSNPPFGKKW 305
           L +  P   L   ++ G +L                 + D      F+  L+   F +  
Sbjct: 649 LAKKHPFTFLDHALKCGDSLVGLTRDQLVKFNWEKDTTYDDKELLLFNEQLNKVKFNRDE 708

Query: 306 EKDKDAVEKEHKNGEL 321
            +  D    + K    
Sbjct: 709 IQSLDDENYDAKRDFY 724


>gi|294787394|ref|ZP_06752647.1| putative Helicase [Parascardovia denticolens F0305]
 gi|294484750|gb|EFG32385.1| putative Helicase [Parascardovia denticolens F0305]
          Length = 1669

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 33/265 (12%)

Query: 148  DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESP-GMI 206
            D+    ++ ++Y     +     S+      TP  +V     +        F        
Sbjct: 887  DSNRQELIKDLYNDFFSKAFKATSQKLGIVYTPMQIVDYMLHVTDRVLKREFGCGLAEEG 946

Query: 207  RTLYDPTCGTGGFLTDAMNHVADCGSHH-KIPPILVPHGQELEPETHAVCVAGM-LIRRL 264
              + DP  GTG ++ + ++          +       H  E+    + + V  +      
Sbjct: 947  VHILDPFAGTGSYMAELISDPELIPVDKLEHKYKYELHSNEILLLAYYIMVVNIEYAYHA 1006

Query: 265  ESDPRRDLSKNIQQGSTLS----KDLFTGKRF---------------HYCLSNPPFGKKW 305
              D   +         T      +D    + F               H  + NPP+    
Sbjct: 1007 RMDGAYEPFTGAVLTDTFQMSEDEDTLDDRMFIGNSERVTEQQRAPIHVIIGNPPYSAGQ 1066

Query: 306  EKDKDAVEKEHKNGELGR----FGPGLPKISDGSML--FLMHLANKLELPPNGGGRAAIV 359
            +   D    EH      R    +   +  ++  S++  ++       +   N G     V
Sbjct: 1067 KSANDNNANEHYPRLENRIRETYSDSVKTVNKNSLMDSYIEAFRWASDRIQNEGVVC-FV 1125

Query: 360  LSSSPLFNGRAGSGESEIRRWLLEN 384
             ++  L    AG+G   +RR  +E 
Sbjct: 1126 SNAGWL-RSEAGAG---VRRCFVEE 1146


>gi|207108686|ref|ZP_03242848.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 296

 Score = 40.7 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTFPKDFDASQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP  G+G F+  A+              +   +G + +    A+       +
Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R++     D   NI Q         T  +F    +NPP+GKK+ +++    K+  N    
Sbjct: 177 RIKERYHLDC-PNIAQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKETFKQKFN---- 229

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
                L +  D + LF +   N L+   + G
Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|300813170|ref|ZP_07093545.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495854|gb|EFK31001.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 503

 Score = 40.7 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 48/194 (24%), Gaps = 46/194 (23%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIR------------TLYDPT 213
             +         T    +      L   D    F+ + G +                DP 
Sbjct: 294 SEDKRSHLGMHYTSVPNIMKVIKPLFLDDLREEFENAKGNVDRLNELYARIGKIKFMDPA 353

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------VPHGQELEPETHAVCVAGM 259
           CG+G FL      +                             +G E+E     V    +
Sbjct: 354 CGSGNFLIITYKELRQLEIDILKELNNMGTSTMYVPSVTLDQFYGIEIEDFACDVTRLSL 413

Query: 260 LI--RRLESDPRRD------------LSKNIQQGSTLSKDL-----FTGKRFHYCLSNPP 300
            I   ++     ++             + +I  G+ L  D         K   Y   NPP
Sbjct: 414 WIAEHQMNVKLHQEIKDAVRPTLPLKKAGDIVCGNALRLDWSKILPHEEKDEVYLFGNPP 473

Query: 301 FGKKWEKDKDAVEK 314
           +     +DK   E 
Sbjct: 474 YLGSSLQDKKQKED 487


>gi|323143207|ref|ZP_08077902.1| hypothetical protein HMPREF9444_00516 [Succinatimonas hippei YIT
           12066]
 gi|322417023|gb|EFY07662.1| hypothetical protein HMPREF9444_00516 [Succinatimonas hippei YIT
           12066]
          Length = 590

 Score = 40.7 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 39/138 (28%), Gaps = 31/138 (22%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGS---------------HHKIPPILVPHGQELEPETH 252
              DP CG G FL  +   +    +                     I   +G E+E    
Sbjct: 33  KFLDPACGCGNFLIVSYRELRRLENKILEQVFTDGFLNISDAIKVNINQFYGIEIEDWPA 92

Query: 253 AVCVAGMLI--RRLESDPR-----------RDLSKNIQQGSTLSKDLFT---GKRFHYCL 296
            +    M +    +  +                S  I+  + L+ D       K   Y L
Sbjct: 93  EIAHLSMWLMEHVMNQETALKFGQTIPSIPLKSSATIKPWNALTIDWNEVIKAKECDYIL 152

Query: 297 SNPPFGKKWEKDKDAVEK 314
            NPPFG      ++  + 
Sbjct: 153 GNPPFGGTTYTTEEQKKW 170


>gi|299145511|ref|ZP_07038579.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298516002|gb|EFI39883.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 927

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 111/337 (32%), Gaps = 46/337 (13%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
                + A  F TP  +  L T L +D  D +            DP CGTG  +  A + 
Sbjct: 331 AYAKRKVAGQFATPPQLADLLTRLTIDKKDGIT----------LDPCCGTGTIIKQAYS- 379

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGM--------LIRRLESDPRRDLSKN-IQ 277
           + +     +   I      +       +    +        ++    SD     +   I 
Sbjct: 380 LKEEYEIGQEQIIESIWASDKHSFPIQLSTLTLSNPGNIGKVLHIFRSDVIELHAGQTIV 439

Query: 278 QGSTLSKDLFTGK--RFHYCLSNPPFG--KKWEKDKDAVEKEHKN-GELGRFGPGLPKIS 332
                + +    +  +  Y +SN PF   K+ +K    +++ +K   E  +    L K S
Sbjct: 440 FKDPNNGNQVEKQLPKVDYIISNLPFIREKEIKKLNPNIKEINKLIKEQTKAKKTLSKKS 499

Query: 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA-IV 391
           D   +F  ++   L    +  G+  ++LS++ L           I+++      I+  ++
Sbjct: 500 D---IF-AYIPFYLYDIISDNGKIGLILSNAWLGTDYGEIFLELIQKYF----NIDCVVI 551

Query: 392 ALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +     F    + T L I + R   E    V L       T              +    
Sbjct: 552 SGKGRWFNNAKVVTTLLIATKR---EISDPVNLDRRISFCTLKEKL---------ENIAD 599

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSF 488
           I  +       K S  ++ +++    IK L  + + +
Sbjct: 600 IKKLSSEIILNKESDWVNIQSYSINEIKQLENIGIPW 636


>gi|27375976|ref|NP_767505.1| hypothetical protein blr0865 [Bradyrhizobium japonicum USDA 110]
 gi|27349115|dbj|BAC46130.1| blr0865 [Bradyrhizobium japonicum USDA 110]
          Length = 1301

 Score = 40.7 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 27/142 (19%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDA 223
           ++         TPR +        L P       +    +     + DP  G+G FL +A
Sbjct: 530 TDERRRTGSHYTPRSLTGPIVRYALQPALEQLGANATPEQILDLKVCDPAMGSGAFLVEA 589

Query: 224 MNHVA----------------------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +A                      +     ++      +G +  P    +    + +
Sbjct: 590 CRALAAKLVVAWAHWPERKPIIPADEDEELHARRLVAQRCLYGVDKNPLATDLAKLSLWL 649

Query: 262 RRLESDPRRDLSKN-IQQGSTL 282
             L  D       + ++ G +L
Sbjct: 650 ATLARDHEFTFLDHALKSGDSL 671


>gi|330996127|ref|ZP_08320019.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841]
 gi|329573839|gb|EGG55424.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841]
          Length = 864

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+   + H         
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFVGSVLRH--------S 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D +      ++   GR                 +   K       G
Sbjct: 192 LAVSNIPFGDIAVFDAEFQ----RSDSFGRRS--------AQKAIHNYFFLKGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRNELFSQADLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SNR--KTEERRGKVQLI 425
                K E    +  + 
Sbjct: 295 QKNLSKKEMSHDERLMT 311


>gi|217033035|ref|ZP_03438504.1| hypothetical protein HPB128_193g2 [Helicobacter pylori B128]
 gi|298736598|ref|YP_003729124.1| adenine-specific DNA-methyltransferase [Helicobacter pylori B8]
 gi|216945234|gb|EEC23916.1| hypothetical protein HPB128_193g2 [Helicobacter pylori B128]
 gi|298355788|emb|CBI66660.1| site-specific DNA-methyltransferase (adenine-specific)
           [Helicobacter pylori B8]
          Length = 814

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +++  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LQILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP  G+G F+  A+              +   +G + +    A+       +
Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R++     D   NI Q         T  +F    +NPP+GKK+ +++       K     
Sbjct: 177 RIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQ-------KENFKQ 226

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           RF   L +  D + LF +   N L+   + G
Sbjct: 227 RFN--LSQSLDSASLFFIASLNYLKENAHLG 255


>gi|197313568|ref|YP_002149612.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092610|emb|CAQ30352.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%)

Query: 134  YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191
              + + F           D         L+    F            T   +V      +
Sbjct: 1044 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVGELWRAV 1101

Query: 192  LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                    +        L +P CG G F+  A             P  +   G E+EP +
Sbjct: 1102 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1141

Query: 252  HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
              +                  S+ I+      +   T   F   + N PF          
Sbjct: 1142 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1178

Query: 312  VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                      GR+ P  P  +   +        K       GG  A+V S    F   A 
Sbjct: 1179 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1225

Query: 372  SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
             G+   R  +     +   V LPT  F     T + T + +   R+ + +  +
Sbjct: 1226 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1276


>gi|197313499|ref|YP_002149544.1| putative methylase/helicase [Rhodococcus equi]
 gi|197092541|emb|CAQ30280.1| putative methylase/helicase [Rhodococcus equi]
          Length = 2949

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%)

Query: 134  YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191
              + + F           D         L+    F            T   +V      +
Sbjct: 1044 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVGELWRAV 1101

Query: 192  LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                    +        L +P CG G F+  A             P  +   G E+EP +
Sbjct: 1102 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1141

Query: 252  HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
              +                  S+ I+      +   T   F   + N PF          
Sbjct: 1142 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1178

Query: 312  VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                      GR+ P  P  +   +        K       GG  A+V S    F   A 
Sbjct: 1179 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1225

Query: 372  SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
             G+   R  +     +   V LPT  F     T + T + +   R+ + +  +
Sbjct: 1226 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1276


>gi|10956643|ref|NP_066779.1| putative methylase [Rhodococcus equi]
 gi|31983873|ref|NP_858481.1| hypothetical protein pREAT701_27 [Rhodococcus equi]
 gi|10657890|gb|AAG21729.1| putative methylase [Rhodococcus equi]
 gi|10801081|dbj|BAB16635.1| Putative methylase (or helicase) [Rhodococcus equi]
          Length = 3229

 Score = 40.7 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 65/293 (22%)

Query: 134  YKICKNFSGIELHPDTVPDRVMSNIYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALL 191
              + + F           D         L+    F            T   +V      +
Sbjct: 1324 GAVPEVFDNRSKFLSEWADER--AALLDLLGEKGFSQARETTLNAHYTDPAIVGELWRAV 1381

Query: 192  LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET 251
                    +        L +P CG G F+  A             P  +   G E+EP +
Sbjct: 1382 -------QRAGLPDGALLVEPGCGAGHFVGTA-------------PAGVNMVGVEIEPIS 1421

Query: 252  HAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
              +                  S+ I+      +   T   F   + N PF          
Sbjct: 1422 AKIA------------HYLYPSQQIRN-HGFERAFATDNTFTGAIGNVPF---------- 1458

Query: 312  VEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
                      GR+ P  P  +   +        K       GG  A+V S    F   A 
Sbjct: 1459 ----------GRWAPVDPIHNAAGLTIHNAFIAKSLALTAPGGYVAVVTSK---FTSDAK 1505

Query: 372  SGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
             G+   R  +     +   V LPT  F     T + T + +   R+ + +  +
Sbjct: 1506 RGDQ--RAQIAAKGDLVGAVRLPTGAFDRQAGTPVVTDVLVFRRREDDAQPTQ 1556


>gi|237718477|ref|ZP_04548958.1| methyltransferase-endonuclease [Bacteroides sp. 2_2_4]
 gi|229452184|gb|EEO57975.1| methyltransferase-endonuclease [Bacteroides sp. 2_2_4]
          Length = 518

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 59/167 (35%), Gaps = 23/167 (13%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y   +    +   +    F TP  + +     +    D++         ++ DP
Sbjct: 21  DRIGRLYTDTV---TAAFKKSNGQFFTPVSIAYFMGKQISVNKDSV---------SVLDP 68

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD- 271
            CGT       + ++       +I  +     + L P    + +  + I  +  + R D 
Sbjct: 69  GCGTAILSCAMIENLVLQSKVKQIELVTYETDENLIPGLQKI-LEYITIWGMRHNVRIDC 127

Query: 272 ---------LSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                     + ++    T+     + +++   +SNPP+ K  ++DK
Sbjct: 128 RSYCEDFILSNYSVLYSDTIYGRADSLQKYDLIISNPPYFKLSKEDK 174


>gi|327395174|dbj|BAK12596.1| type I restriction-modification system methyltransferase subunit
           [defense mechanisms] [Pantoea ananatis AJ13355]
          Length = 235

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 52/171 (30%), Gaps = 10/171 (5%)

Query: 119 DFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
            + + +AR +K  +L  + +  + +    +      +  IY  L         +  E + 
Sbjct: 52  KYMAIVARYKKKDVLS-MARLLACVVNGLEEKICDFLGRIYMLL-----ELGDKDKEPYF 105

Query: 179 TPRDVVHLATALLLDPDDALFKE--SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           TP  V  +   L         +E        T  +P CG G       + +   G     
Sbjct: 106 TPWSVALMMAQLQFGAQLGKPEEVFRDKPFITFAEPACGAGAMTLAFASMLKQAGYSPHR 165

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
              +     +++P    +    + +  +  +     +   ++   L   + 
Sbjct: 166 YLWVSVT--DIDPLAAGMAYIQLSLCDIPGEVVIGNALCDERRRVLLTPVH 214


>gi|269929250|ref|YP_003321571.1| hypothetical protein Sthe_3349 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788607|gb|ACZ40749.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 914

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 35/194 (18%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-------------PHGQELEPETHAV 254
           T+ DP CG+G FL  A+  + +                          HG E     H +
Sbjct: 371 TILDPACGSGNFLYVALEQLKNLEKEVISYAAHRGLSMLLPQVTPRQLHGIETNAYAHEL 430

Query: 255 CV----------AGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGK----RFHYCLS 297
                         M   ++  DP  +    +     +   S      +       + + 
Sbjct: 431 AQIVVWIGYIQWMTMNGFQVNRDPVLEPMDTVLLMDAILDRSDPAQPREPAWPDAEFIIG 490

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           NPPF    ++ +  +  E+ +     +   +P+  +  +        +  +      RA 
Sbjct: 491 NPPF-LGGKRLRTELGDEYVDAMFAVYNGRVPR--EADLCCYWFEKARAMIAAGRVKRAG 547

Query: 358 IVLSSSPLFNGRAG 371
           ++ ++S    G A 
Sbjct: 548 LLATNSI--RGGAN 559


>gi|228911340|ref|ZP_04075143.1| hypothetical protein bthur0013_54770 [Bacillus thuringiensis IBL
           200]
 gi|228848277|gb|EEM93128.1| hypothetical protein bthur0013_54770 [Bacillus thuringiensis IBL
           200]
          Length = 289

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 159 YEHLI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           Y  +I     G     G   F TP  +  + T ++    D    +     +T+YDP  G 
Sbjct: 159 YMSIILCEETGKGYKNGLGYFPTPFQLSIMMTHVVYKGIDNPATKDKYKGKTVYDPCVGC 218

Query: 217 GGFLTDAMNH 226
           G     A N+
Sbjct: 219 GSTFLPASNY 228


>gi|213021362|ref|ZP_03335809.1| hypothetical protein Salmonelentericaenterica_00661 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 216

 Score = 40.7 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            + + ++E L      +  +    F+TP D+  L T ++                 + D 
Sbjct: 66  DIFNELFEDLF--LTGKKGDSFGQFLTPTDISELLTDIVYTTSKDK--------YKIADS 115

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE---LEPETHAVCVAGMLIRRLESDPR 269
             GTG  +   +  +        I  + + +  +   +     A  +  M+   L+    
Sbjct: 116 CAGTGSLIFPLIKRIFFKEGFEGIQKVELFYNDKDSFVSQLFIAQILTNMIYHNLDFKSL 175

Query: 270 RDLSKN-IQQGST 281
                N I +  T
Sbjct: 176 HVYIGNAITEYDT 188


>gi|257052780|ref|YP_003130613.1| restriction/modification enzyme [Halorhabdus utahensis DSM 12940]
 gi|256691543|gb|ACV11880.1| restriction/modification enzyme [Halorhabdus utahensis DSM 12940]
          Length = 1343

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 26/138 (18%)

Query: 172 EGAEDFMT-PRDVVHLATALLLDPDDALFKESPGMIRT--------LYDPTCGTGGFLTD 222
           +    + T P  V  L  + L    +   +++              + DP  G+G FL  
Sbjct: 484 KETGSYYTKPELVDELIESALKPVVNDRLEDADTKEEKEEALLDIDVCDPAVGSGAFLIA 543

Query: 223 AMNHVADCGSHHKIP----------------PILVPHGQELEPETHAVCVAGMLIRR-LE 265
           A N +    +  +                       +G +L P    +    + I   +E
Sbjct: 544 ANNFLGKRLAEIRSDSAYPDEETVRQARRSVVQHCLYGVDLNPMAVELAKVSLWINSAVE 603

Query: 266 SDPRRDLSKNIQQGSTLS 283
             P   L   I+QG++L 
Sbjct: 604 DQPLSFLDHRIKQGNSLL 621


>gi|157952720|ref|YP_001497612.1| hypothetical protein NY2A_B416R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|157953553|ref|YP_001498444.1| hypothetical protein AR158_C363R [Paramecium bursaria Chlorella
           virus AR158]
 gi|155122947|gb|ABT14815.1| hypothetical protein NY2A_B416R [Paramecium bursaria Chlorella
           virus NY2A]
 gi|156068201|gb|ABU43908.1| hypothetical protein AR158_C363R [Paramecium bursaria Chlorella
           virus AR158]
          Length = 372

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 38/140 (27%), Gaps = 35/140 (25%)

Query: 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
             F TPR +  +              +     R + DPTCG+G FL D            
Sbjct: 23  GIFFTPRSLRSIL-----------LSKITSRPRNILDPTCGSGEFLNDCFE--------- 62

Query: 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHY 294
              P     G E   +   V                  +  I     +        +F  
Sbjct: 63  -KWPDSTLTGVEFTDDIVPVARDN------------VPNATIHHHDFMK--WKQDGKFDL 107

Query: 295 CLSNPPFGKKWEKDKDAVEK 314
            + NPPF K  +     + K
Sbjct: 108 IVGNPPFVKLTKSPNTHMYK 127


>gi|114705223|ref|ZP_01438131.1| hypothetical protein FP2506_09801 [Fulvimarina pelagi HTCC2506]
 gi|114540008|gb|EAU43128.1| hypothetical protein FP2506_09801 [Fulvimarina pelagi HTCC2506]
          Length = 639

 Score = 40.7 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 47/185 (25%)

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRD-VVHLATALLLDP 194
           I + F         V   +   + E   R   S          TPR  V  L    +++P
Sbjct: 335 ITELFIAANRDWREVEPDIFGTLLE---RALNSRERSKLGAHYTPRAYVERLVVPTIIEP 391

Query: 195 DDALFKESPGMIRTLYD-------------------------PTCGTGGFLTDAMNHVAD 229
               + +    ++ L+D                         P CGTG FL  A+  +  
Sbjct: 392 LRDDWDQVKAEVKDLHDQNKDAAAIAKVKAFHHTLCTTRVLDPACGTGNFLYVALELMKR 451

Query: 230 CGS------------------HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
                                  +       +G E+ P   A+    + I  ++   + +
Sbjct: 452 LEGEVLEALDELGEDAPRFAMEGETVGPRQFYGPEINPRAVAIADLVLWIGFIKWQLKTN 511

Query: 272 LSKNI 276
               I
Sbjct: 512 GLSAI 516


>gi|197294453|ref|YP_001798994.1| Putative N6 adenine-specific DNA methyltransferase, probably
           truncated [Candidatus Phytoplasma australiense]
 gi|171853780|emb|CAM11712.1| Putative N6 adenine-specific DNA methyltransferase, probably
           truncated [Candidatus Phytoplasma australiense]
          Length = 212

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 74/258 (28%), Gaps = 66/258 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  V      +L                 + DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRDL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G ++E  T                       N+   
Sbjct: 52  LLPWQQ------------KGFDVLGVDIEKTTF---------------------PNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395
           +L  +               IVL +   F     S  S+  +  L  +   I +I++LP 
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPKISSIISLPK 178

Query: 396 DLFFRTNIATYLWILSNR 413
           D+F      + + I +  
Sbjct: 179 DVFENVVFHSEILIFNVN 196


>gi|159029908|emb|CAO90962.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 917

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 48/209 (22%), Gaps = 47/209 (22%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDP 212
              +         T    +      L   D     E     R                DP
Sbjct: 298 MNPKERRNLGAHYTSEKNIQKVIKPLFLDDLHREFEKIKGNRNKLLEFQKKIANLYFLDP 357

Query: 213 TCGTGGFLTDAMNHVADCG-----------------SHHKIPPILVPHGQELEPETHAVC 255
            CG G FL      + D                   S      +    G E +     V 
Sbjct: 358 ACGCGNFLIITYRELRDLEILVLQELDKTGQLVTDISAIIQVDVNQFAGIEYDEFAVRVA 417

Query: 256 VAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT---GKRFHYCLSNP 299
              M +   + + +                S  I  G+ L  D       ++ ++ L NP
Sbjct: 418 EVAMWLIDHQMNVKVSNTFGQYFVRLPLKKSAKIVHGNALRIDWEELISKEKLNFILGNP 477

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
           PF      + +           G  G G+
Sbjct: 478 PFVGAMIMNDEQRNDMA-YVFDGEKGIGV 505


>gi|138896326|ref|YP_001126779.1| adenine-specific methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267839|gb|ABO68034.1| Adenine-specific methyltransferase [Geobacillus thermodenitrificans
           NG80-2]
          Length = 307

 Score = 40.7 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 102/330 (30%), Gaps = 50/330 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +Y+ + ++  + +F        ++ L  A  L K        EL  D   +  +   ++ 
Sbjct: 4   TYLEAVAETGENLFHGDVLQDEVSEL-NAKRLKK-----QYRELMLDRFQNEEIRKAFQL 57

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +   +        MTP  V      L+           P +  T+ DP  GT   LT
Sbjct: 58  AVLKGMRQH-IQPHHQMTPDAVSLFLAYLV------RRFTRPHLALTILDPAVGTANLLT 110

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +N ++              +G +++     +      +++                 +
Sbjct: 111 AVLNGLSGKQVKS--------YGVDVDDLLVKLAYVNANLQKHSLQLFNQ--------DS 154

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L       +     + + P G               +    RF     K  +G       
Sbjct: 155 LRP--LFVEPADVIVCDLPVGYYP-----------DDDNASRFAL---KAEEGQSYAHHL 198

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           L  +       GG    ++ ++   + +A     ++ ++L E  +++ ++ LP  +F   
Sbjct: 199 LIEQSLRYTKDGGYLFFLIPNTLFSSPQAE----QLNQFLKETAIVQGVLQLPLSMFKHE 254

Query: 402 NIATYLWILSNRKT-EERRGKVQLINATDL 430
             A  ++IL  +    +    V L      
Sbjct: 255 QAAKSVFILQKKGPMAKPPKNVLLAELPRF 284


>gi|260824838|ref|XP_002607374.1| hypothetical protein BRAFLDRAFT_204971 [Branchiostoma floridae]
 gi|229292721|gb|EEN63384.1| hypothetical protein BRAFLDRAFT_204971 [Branchiostoma floridae]
          Length = 417

 Score = 40.7 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 68/218 (31%), Gaps = 29/218 (13%)

Query: 112 KAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRV-----MSNIYEHLIR 164
           K I +  DF     R  L+ A   + + +++          P R      + +    LI 
Sbjct: 126 KDIIDALDFLPFQGRVDLKNAEHTFYVLEDYGDDPTKTPEEPYRTFFGRWIGDGQRKLID 185

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           ++     +   +      +  +   +           +      ++DP  GTG  L  + 
Sbjct: 186 KYAVRKRQHIGETSMDAGLSFVMANM----------AATRRNTVVFDPFVGTGSLLVSSA 235

Query: 225 N---HVADCGSH---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
           +   +V                  H ++   E   +  A +    LE      L  +  +
Sbjct: 236 HFGSYVLGTDIDSHIIHGWGRSTRHNKKWRGEDENI-RANLRQYGLEHLYLDVLVSDAAR 294

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             ++ +     + F   +++PP+G +    +   +  +
Sbjct: 295 --SVWRPC---QLFDAIVTDPPYGIREASQRLGTKDNN 327


>gi|315171700|gb|EFU15717.1| protein, SNF2 family [Enterococcus faecalis TX1342]
          Length = 2159

 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 104/359 (28%), Gaps = 71/359 (19%)

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFD 119
           +   S  +     K  G ++Y  S    S       ++N+++    +   A+ I  +   
Sbjct: 533 SDEPSANEEIVIKKEVGSNYYLDSSVQYSNGKKVKFKDNIQAIRVLYQLEAEEIPLDH-- 590

Query: 120 FSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             +   +L K      + + F         +    + +    E+         S     F
Sbjct: 591 --TAQEQLAKYSGWGGLQEAFDDHNFSWQKEYQELKQLLTETEY-----EKARSSVLTAF 643

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            T  ++V     +L        +      +T+ DP  GTG F  +    +          
Sbjct: 644 YTSSEIVQEMYQVL-------NQIGNFANKTILDPGMGTGNFFMNLPESLRSSKQ----- 691

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G E++P T  +              +      I Q     + +   ++    ++
Sbjct: 692 -----IGVEIDPLTSRIAK------------QLLPEAQIYQM--GYEQVELPEKVDAVIT 732

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           N PF     +DK          +                 FL    + L+      G   
Sbjct: 733 NIPFNDIRVRDKKYDRYNFSIHDY----------------FLAKSIDSLKE----NGILM 772

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           ++ S+S +          + R +L +   +   V LP   F     T + + + +   +
Sbjct: 773 VITSASSMDKRN-----DKAREYLAKKANLVGAVRLPKTAFRQSAGTEVISDILLFQKK 826


>gi|256618605|ref|ZP_05475451.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598132|gb|EEU17308.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 2159

 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 104/359 (28%), Gaps = 71/359 (19%)

Query: 61  AFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAI-FEDFD 119
           +   S  +     K  G ++Y  S    S       ++N+++    +   A+ I  +   
Sbjct: 533 SDEPSANEEIVIKKEVGSNYYLDSSVQYSNGKKVKFKDNIQAIRVLYQLEAEEIPLDH-- 590

Query: 120 FSSTIARLEKAGLLYKICKNFSGIE--LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDF 177
             +   +L K      + + F         +    + +    E+         S     F
Sbjct: 591 --TAQEQLAKYSGWGGLQEAFDDHNFSWQKEYQELKQLLTETEY-----EKARSSVLTAF 643

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            T  ++V     +L        +      +T+ DP  GTG F  +    +          
Sbjct: 644 YTSSEIVQEMYQVL-------NQIGNFANKTILDPGMGTGNFFMNLPESLRSSKQ----- 691

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
                 G E++P T  +              +      I Q     + +   ++    ++
Sbjct: 692 -----IGVEIDPLTSRIAK------------QLLPEAQIYQM--GYEQVELPEKVDAVIT 732

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA 357
           N PF     +DK          +                 FL    + L+      G   
Sbjct: 733 NIPFNDIRVRDKKYDRYNFSIHDY----------------FLAKSIDSLKE----NGILM 772

Query: 358 IVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
           ++ S+S +          + R +L +   +   V LP   F     T + + + +   +
Sbjct: 773 VITSASSMDKRN-----DKAREYLAKKANLVGAVRLPKTAFRQSAGTEVISDILLFQKK 826


>gi|229587546|ref|YP_002860584.1| superfamily II DNA and RNA helicase [Clostridium botulinum Ba4 str.
           657]
 gi|229260318|gb|ACQ51355.1| superfamily II DNA and RNA helicase [Clostridium botulinum Ba4 str.
           657]
          Length = 1306

 Score = 40.7 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 57/399 (14%), Positives = 113/399 (28%), Gaps = 75/399 (18%)

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNL-----ESYIASFSDNAKAIFEDFDFSSTIAR-- 126
           KVA   F+N +          + +  L      S +    +N  AI         + +  
Sbjct: 39  KVAQIDFFNLNPDITKNNKLKDEKFELKQIENNSILTRIKNNIIAIKLAKKLKQQVRKAD 98

Query: 127 LEKAGLLYK------ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           + +  L+ +      +   F   +   +      +    E+      + +S     F T 
Sbjct: 99  MFEKDLISQYSGWGGLQDLFQQNKYIKEREKIEELLTEEEY-----RNALSSINTSFYTN 153

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           + ++               K+       + +P+CG G F+      +    +   I    
Sbjct: 154 KSIISFM--------HNALKKMGFKHGRVLEPSCGIGNFIGYMPQDIKSNSNIIGIEKE- 204

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST-LSKDLFTGKRFHYCLSNP 299
                                  L +     L +N +  +T           F   + N 
Sbjct: 205 ----------------------GLAASIAAQLYQNAEIQNTGFENARILDNYFDVVVGNV 242

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359
           PFG     DK+                     +  ++    +   K       GG  A++
Sbjct: 243 PFGNIKVHDKNY--------------------NKYALSIHNYFIVKSLDKVRPGGIVALI 282

Query: 360 LSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERR 419
            SS  +     GS  +++R  + E   + A + LP   F  TN      IL  +K  E  
Sbjct: 283 TSSFTM-----GSKTNKVREIIGEKANLIAAIKLPNIAFGNTNTTVVSDILILQKKLENH 337

Query: 420 GKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
            +  L     +   I         +     ++I + +  
Sbjct: 338 NESNLSKWLQVNNEINEYFSNNPKMIAGNIKEISEPFGK 376


>gi|298485667|ref|ZP_07003746.1| Type II restriction enzyme, methylase subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159693|gb|EFI00735.1| Type II restriction enzyme, methylase subunit [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 997

 Score = 40.7 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 94/384 (24%), Gaps = 96/384 (25%)

Query: 119 DFSSTIARLEKAGLLYK----------------------ICKN--FSGIELHPDTVPDRV 154
           DF S I +L+ +   Y                       I +   F             +
Sbjct: 262 DFKSLIQKLKNSDRKYNSGLFSLSYINTLINNADSCIWPIIEELYFPQSTYSFSVFSSEI 321

Query: 155 MSNIYEHLIR---RFGSEVSEGAE---------DFMTPRDVVHLATALLLDPDDALFKES 202
           + NIYE  +    R   +     +            TP  +V                + 
Sbjct: 322 LGNIYEVFLSERIRINVDGKIELQPKKDHIDRDVVTTPGHIVRDIIRNTAVEFCRNKTDK 381

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPET-HAVCVAGMLI 261
             +     D  CG+G FL +    + D    + I        Q         +CV   ++
Sbjct: 382 QILNSKFADIACGSGAFLLELFQALQDILIDYYIVHDKSKLQQLTSHSFKLKLCVKKEIL 441

Query: 262 R----RLESDPRRDLS-----------------------------KNIQQGSTL------ 282
                 ++ D     +                              NI  G++L      
Sbjct: 442 TKCIYGIDKDFNAVKACSFGLLLKLLEGESKDTIELNTSILPKIDNNILFGNSLIDSNDN 501

Query: 283 --------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                           RF   + NPP+      +        +            K  D 
Sbjct: 502 IKTTDAIAVNPFNIVHRFDVIIGNPPY---MATEHMKQLTPLELPIYKNKYKSAHKQFDK 558

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
             LF+      L+      G    +L S     G        +R+ L E   +  +++  
Sbjct: 559 YFLFVERSMQLLKDE----GFLGYILPSKFTKVGAGQG----LRKLLTEQKYLSKLISFG 610

Query: 395 -TDLFFRTNIATYLWILSNRKTEE 417
            + +F      T L  L   +  +
Sbjct: 611 ASQVFKDKTTYTCLLFLKKSEQTK 634


>gi|225619640|ref|YP_002720897.1| adenine/cytosine DNA methyltransferase [Brachyspira hyodysenteriae
           WA1]
 gi|225214459|gb|ACN83193.1| adenine/cytosine DNA methyltransferase [Brachyspira hyodysenteriae
           WA1]
          Length = 812

 Score = 40.7 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 32/230 (13%)

Query: 84  SEYSL--STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           S+ +L    L       N+   I     +   IFE+    + I  L K  L  K      
Sbjct: 334 SKLTLSEKELFLKQNELNIRKCIGEAVPSI--IFEEIS-KNIIFELNKKCLDKKDINEIL 390

Query: 142 GIELHPDTVPDRVMSNIYEHLIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
             +       +      ++ +++         +    F TP+ V              L 
Sbjct: 391 NNDYISFIKDNYEK-LCFDDIVKVVELSKSDRKLNASFFTPQYVCFDMI-------KDLP 442

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
           + S   +  + +P+CG G FL   +                   G++LE +   + +  +
Sbjct: 443 EFSNKDVIRILEPSCGIGSFLPQLIK---------------KYQGKKLEIDCIDIDIENI 487

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            I +       +++ N      L  DL   K++   + NPPFG   +  K
Sbjct: 488 SIAKNIFFNDNNITFNFINADFLLCDL--DKKYDIVVGNPPFGNIIKDKK 535


>gi|269961079|ref|ZP_06175448.1| hypothetical protein VME_18320 [Vibrio harveyi 1DA3]
 gi|269834298|gb|EEZ88388.1| hypothetical protein VME_18320 [Vibrio harveyi 1DA3]
          Length = 894

 Score = 40.7 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 57/231 (24%)

Query: 118 FDFSSTIARLEKAGLLYKI---CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
           F+    I  L K G    I    +++S I          +  ++++ +I     +     
Sbjct: 253 FESDEPIPELGKKGRRILIECGLEDWSAINP-------DIFGSMFQAVID---VDQRARL 302

Query: 175 EDFMTP-RDVVHLATALLLDPDDALFKESPGMI------------RTLYDPTCGTGGFLT 221
               T   +++ +   L LDP  A  ++    +              ++DP CG+G FL 
Sbjct: 303 GQHYTSYSNIMKVIQPLFLDPLRAELEKQRNSVNGLKRLLVRLGEIKVFDPACGSGNFLI 362

Query: 222 DAMNHVADCGSH-------------HKIPPILVPHGQELEPETHAVCVAGMLI--RRLES 266
            A   +                        +   +G E++     +    + +   ++  
Sbjct: 363 IAYKELRLLEIEVIQALMKIDQGFFISNIHLDQFYGIEIDDFACEIARLSLWLAEHQINK 422

Query: 267 DPRRDLSK-----------NIQQGSTLSKDLFT-----GKRFHYCLSNPPF 301
                +              I  G++L ++             Y + NPPF
Sbjct: 423 QWEEHIGPAEDPLPLKATGKIVSGNSLHENWKEVCPKADSDEVYVIGNPPF 473


>gi|315303359|ref|ZP_07873978.1| adenine-specific methyltransferase [Listeria ivanovii FSL F6-596]
 gi|313628274|gb|EFR96788.1| adenine-specific methyltransferase [Listeria ivanovii FSL F6-596]
          Length = 219

 Score = 40.7 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 34/224 (15%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD 267
           ++ DP CGT   LT  +N +       K    +   G +++    ++      +   +  
Sbjct: 4   SILDPACGTANLLTTVINQL-----ELKEGMEIHASGVDVDDLLISLA-----LVGADLQ 53

Query: 268 PRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327
            ++     +     L+  L              F   +  D++A   E    E   F   
Sbjct: 54  RQKMT---LLHQDGLANLLVDPVDVVVSDLPVGF---YPDDENAKSFELCREEGHSF--- 104

Query: 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
                    LF+       +     GG    ++  +          +    +++ +N  I
Sbjct: 105 ------AHFLFMEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHI 150

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430
           E I+ LP  LF        + IL       +   +V L N + L
Sbjct: 151 EGIIKLPETLFKSEQARKSILILRKAAENVKPPKEVLLANLSSL 194


>gi|118580703|ref|YP_901953.1| type II restriction enzyme [Pelobacter propionicus DSM 2379]
 gi|118503413|gb|ABK99895.1| type II restriction enzyme [Pelobacter propionicus DSM 2379]
          Length = 1160

 Score = 40.7 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 80/294 (27%), Gaps = 31/294 (10%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASF 107
            +  V E  L            +     + + T  +    +         +NL    +  
Sbjct: 130 DKQKVVELKLDGSKDAELYRLLLVAQCNALHTTMPFLFEKIEDETELLLPDNLLHSDSLI 189

Query: 108 SDNAKAIFED----FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                 I E+     +    + +   +    ++       E  P        + I +++ 
Sbjct: 190 RKLVTEIEEEDWQEVEIIGWLYQFYISEKKDQVIGKVVKSEDIPAATQLFTPNWIVKYMA 249

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES---------PGMIRTLYDPTC 214
           +   S   +    +        +   +         K                TL DP C
Sbjct: 250 Q--NSLGRKWLATYPNSPLKAKMEYYIEPAEQTDDVKAQLAAITPDSLDPETLTLLDPAC 307

Query: 215 GTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPETHAVCVAGMLIRRLES 266
           G+G  L +A +   +                     +G +++     +    +L++  + 
Sbjct: 308 GSGHILVEAYDVFKEIYLERGYSNRDFPRLILEKNLYGLDIDDRAAQMAGFALLMKARKD 367

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           D R   S N  + + ++      +     + N  FG +       V    KNG+
Sbjct: 368 DRRILRSDNPVKLNVMA----IQESGDIAIDNSVFG-EHANALRDVVDLFKNGK 416


>gi|196249948|ref|ZP_03148643.1| N-6 DNA methylase [Geobacillus sp. G11MC16]
 gi|196210462|gb|EDY05226.1| N-6 DNA methylase [Geobacillus sp. G11MC16]
          Length = 329

 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 102/330 (30%), Gaps = 50/330 (15%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +Y+ + ++  + +F        ++ L  A  L K        EL  D   +  +   ++ 
Sbjct: 26  TYLEAVAETGENLFHGDVLQDEVSEL-NAKRLKK-----QYRELMLDRFQNEEIRKAFQL 79

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + +   +        MTP  V      L+           P +  T+ DP  GT   LT
Sbjct: 80  AVLKGMRQH-IQPHHQMTPDAVSLFLAYLV------RRFTRPHLALTILDPAVGTANLLT 132

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +N ++              +G +++     +      +++                 +
Sbjct: 133 AVLNGLSGKQVKS--------YGVDVDDLLVKLAYVNANLQKHSLQLFNQ--------DS 176

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L       +     + + P G               +    RF     K  +G       
Sbjct: 177 LRP--LFVEPADVIVCDLPVGYYP-----------DDDNASRFAL---KAEEGQSYAHHL 220

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
           L  +       GG    ++ ++   + +A     ++ ++L E  +++ ++ LP  +F   
Sbjct: 221 LIEQSLRYTKDGGYLFFLIPNTLFSSPQAE----QLNQFLKETAIVQGVLQLPLSMFKHE 276

Query: 402 NIATYLWILSNRKT-EERRGKVQLINATDL 430
             A  ++IL  +    +    V L      
Sbjct: 277 QAAKSVFILQKKGPMAKPPKNVLLAELPRF 306


>gi|154498723|ref|ZP_02037101.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC
           29799]
 gi|150272263|gb|EDM99461.1| hypothetical protein BACCAP_02714 [Bacteroides capillosus ATCC
           29799]
          Length = 2062

 Score = 40.7 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 67/265 (25%), Gaps = 68/265 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +          T   V+      +                 + +P+CG G F    
Sbjct: 506 EEYAAARGSTLNAHYTSPTVIRAIYEAVG--------RMGFETGNILEPSCGVGNFFGML 557

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQ 278
              +               +G EL+  +  +       A + +   E+  RRD       
Sbjct: 558 PEEMR----------NSRLYGVELDSISGRIAQQLYPKADITVAGFETTDRRDF------ 601

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                        +   + N PFG+   +DK   +                         
Sbjct: 602 -------------YDLAIGNVPFGQYQVRDKAYDKLNFSIHNY----------------- 631

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                 K       GG  A V            + +S +RR+L +   +   + LP D F
Sbjct: 632 ---FFAKALDQVRPGGVVAFVT-----SRYTMDAKDSSVRRYLAQRAELLGAIRLPNDAF 683

Query: 399 -FRTNIATYLWILSNRKTEERRGKV 422
                      I+  +K +     V
Sbjct: 684 KKNAGAEVVSDIIFLQKRDRPLDIV 708


>gi|300932921|ref|ZP_07148177.1| hypothetical protein CresD4_02576 [Corynebacterium resistens DSM
           45100]
          Length = 905

 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 77/297 (25%), Gaps = 65/297 (21%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-----MSNIYEH 161
           FS  A+ +    +    I       +   + +         +           +  I   
Sbjct: 261 FSSKAREML--IELGRQIWLDINPDIFGSMFQAIVTPGKRSNLGQHYTSVPNILKTIEPL 318

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            +     E       F  P+ +  L   +                  ++DP CG+G FL 
Sbjct: 319 FLDELKEEF---EAVFDDPKKLERLLDRI--------------ARIKVFDPACGSGNFLV 361

Query: 222 DAMNHVADCGSHHKIPPIL----------------VPHGQELEPETHAVCVAGMLIRRLE 265
            A   +                               +G E++     V +  + I + +
Sbjct: 362 IAYKELRRLEHAILQRQTDLGTNDVLFNESRISIENFYGIEIDDFAVEVAILSLWIAKHQ 421

Query: 266 SDPRRDLSKN-------------IQQGSTLSKDLFT-----GKRFHYCLSNPPFGKKWEK 307
            +                     I+ G+    D        G    Y + NPP+G   ++
Sbjct: 422 MNREFQEQFGISIPLIPLKEAGRIRAGNAARIDWNEVCPNNGMDEIYLIGNPPYGGSKKQ 481

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
                  E K      FG   P   +   + L  +    +     G + A V ++S 
Sbjct: 482 -----STEQKEDYAFVFGDR-PYNKNLDYIALWFIKGS-DYIAGTGAKLAFVSTNSV 531


>gi|157952534|ref|YP_001497426.1| hypothetical protein NY2A_B230L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|2454656|gb|AAC03125.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus
           NY2A]
 gi|155122761|gb|ABT14629.1| hypothetical protein NY2A_B230L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 382

 Score = 40.7 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 80/268 (29%), Gaps = 68/268 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++   +       F TP+D+      ++ +  D +    P     + +PTCGTG F+ D 
Sbjct: 13  KQLSKQERSTGGVFFTPKDIR----DIIFEELDRISDFEPK---NILEPTCGTGEFIDDC 65

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                      ++       G E++P +  +                D    I     ++
Sbjct: 66  R----------RVYGNAHILGVEIDPRSAELAR-------------DDSKNEIIVHDFIT 102

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               T ++F   + NPPF  +    +                     +   S + +  + 
Sbjct: 103 --WNTTEKFDLIIGNPPFFTRPSGFRHDPNV----------------VKCRSNICIEVVH 144

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNG--------RAGSGESEIRRWLLENDLIEAIVALPT 395
             +       G  A+VL  S L +            + +    R + +N+          
Sbjct: 145 KCMTGHLAENGILAMVLPMSLLNSKFYTPTVDRITTTMDVMFVREIKKNN---------- 194

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQ 423
             F  TN+   ++I+           + 
Sbjct: 195 --FMGTNVRVMVFIIRKCPPRVDNTYIF 220


>gi|322510791|gb|ADX06105.1| putative type I restriction modification N-terminal
           methyltransferase domain protein [Organic Lake
           phycodnavirus 1]
          Length = 201

 Score = 40.7 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 16/158 (10%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS-LSTLGSTNT 96
             +L+ LE      R    ++Y          +  ++   +       ++ L+     N 
Sbjct: 47  LLILKLLETHF--GREINIDEYE--YDFTHIEDEMIEKHKHKLLEIVRFTHLANEKEDNI 102

Query: 97  RNN---LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
             N   L   I S     K IF           ++      K+    + ++         
Sbjct: 103 PVNMKYLWDDILSNHPTTKNIF----LKGKGFDIQHKSTYKKLIDKLNSLDKTHTECD-- 156

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191
           V+ N YE +I+       +    F T   V  +   L+
Sbjct: 157 VLGNAYEEVIQDIM--TGKVLGQFFTQPLVKKMMVTLI 192


>gi|291166691|gb|EFE28737.1| superfamily II DNA and RNA helicase [Filifactor alocis ATCC 35896]
          Length = 2944

 Score = 40.7 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 58/398 (14%), Positives = 117/398 (29%), Gaps = 76/398 (19%)

Query: 43   RLECALEPTRSAVREKYLAFGGSNIDLESF-VKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
            RLE  LE     +  K       +ID ++  +K+  ++F  T E     L  +     L 
Sbjct: 1083 RLESDLERIFENLTYKKAKDTIQDIDEKAEKLKIEAHNFKITEEILPEKLTPS---ERLN 1139

Query: 102  SYIASFSDNAKAIFEDFDFSSTIARLEKAGL----LYKICKNFSGIELHPDTV--PDRVM 155
              + + S   +      +  +T   +    +    L ++       +         + + 
Sbjct: 1140 QNLEAISMLKRVESGQRELDNTAQEVLAKYVGWGGLSEVFDESREGQWKEARAFLKENLS 1199

Query: 156  SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
            S+ YE       +        F TP+ V+    +                   + +P+ G
Sbjct: 1200 SSEYE-------AAKESTLTAFYTPKTVIDSIYS--------TLSGMGFKNGNILEPSMG 1244

Query: 216  TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
             G F+    + ++              +G EL+  +  +                +    
Sbjct: 1245 IGNFIGSLPDEMSSSK----------FYGVELDSLSGRIGKL----------LYPESDIQ 1284

Query: 276  IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
            I+    L +  F+   F   + N PFG+    D++  +      +               
Sbjct: 1285 IKG---LEETSFSNNFFDAVIGNVPFGEYKVNDREYNKNNFLIHDY-------------- 1327

Query: 336  MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
                     K       GG  A +       +G     +  +RR+L         + LP 
Sbjct: 1328 ------FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPN 1376

Query: 396  DLF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
            D F     T + + +  L  R +   R +  +  A D 
Sbjct: 1377 DTFKGVAGTEVTSDIIFLKKRDSIRERDEDWIHLAEDE 1414


>gi|38640380|ref|NP_944303.1| Bcep22gp75 [Burkholderia phage Bcep22]
 gi|33860447|gb|AAQ55007.1| Bcep22gp75 [Burkholderia phage Bcep22]
          Length = 4602

 Score = 40.7 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 62/253 (24%), Gaps = 57/253 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             ++            T   V+               +        + +P  G G F    
Sbjct: 1655 EQYEQAKRTTQYAHYTSEGVIRSIY--------DGLRRLGFAGGKVLEPGMGIGLFKGLM 1706

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             + +A               G E +  T A+                    NI  G   +
Sbjct: 1707 PDSMAA---------TSQYTGVEYDALTGAIAK------------LLYPQSNIIVGD-FT 1744

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K     + F   + NPPF      +    +K+        F   + ++            
Sbjct: 1745 KTAMPREFFDAAIGNPPFASVVVTNDPEYKKQGFMLHDYFFAKTIDRVK----------- 1793

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
                     GG    V S   +            RR+L +   +   + LP   F     
Sbjct: 1794 --------PGGMLVFVTSKGTM-----DKASDRARRYLADRANLIGAMRLPQTAFKDNAG 1840

Query: 401  TNIATYLWILSNR 413
            T + T +  L  R
Sbjct: 1841 TEVVTDVLFLQKR 1853


>gi|327314036|ref|YP_004329473.1| Eco57I restriction endonuclease [Prevotella denticola F0289]
 gi|326945481|gb|AEA21366.1| Eco57I restriction endonuclease [Prevotella denticola F0289]
          Length = 1103

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 41/178 (23%)

Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189
           NF+  E  P+         ++  ++E+L+  +  E  E     +  F TPR++V+     
Sbjct: 388 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 447

Query: 190 --LLLDPDDALFKE--------------------SPGMIRTLYDPTCGTG----GFLTDA 223
             +    +D   +                            + DP CG+G    G L   
Sbjct: 448 SLMAYLGNDETVRSVFSRDFIYDKSKADEYKSIVERLKNVKVLDPACGSGAFPMGLLNKM 507

Query: 224 MNHVADCGSHHKIPP------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +  +        I            +G +++     +      I  +    + +   N
Sbjct: 508 VEVIERISPEEDIYSLKLSIIEKCLYGSDIQSIAAQITKLRFFISLICDCVKDETKPN 565


>gi|241758976|ref|ZP_04757088.1| DNA-methyltransferase [Neisseria flavescens SK114]
 gi|241320797|gb|EER57030.1| DNA-methyltransferase [Neisseria flavescens SK114]
          Length = 937

 Score = 40.3 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 32/123 (26%), Gaps = 32/123 (26%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------------PILVPHGQELEPET 251
              DP CG G FL  A   +                           I   HG E++   
Sbjct: 366 QFLDPACGCGNFLVVAYRELRKLEDDIIGELFAEGQLLDISTMLQTHIGQFHGIEIDEYP 425

Query: 252 HAVCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDLFTGKRFHYCLSN 298
             +    M +   + + R                   I   ++L  +     +  Y   N
Sbjct: 426 AQIAKVAMWLTDHQCNLRTAERFGQTRPSIPLTDSAEIINANSLHTEW---PQADYIFGN 482

Query: 299 PPF 301
           PPF
Sbjct: 483 PPF 485


>gi|254514667|ref|ZP_05126728.1| hypothetical protein NOR53_1987 [gamma proteobacterium NOR5-3]
 gi|219676910|gb|EED33275.1| hypothetical protein NOR53_1987 [gamma proteobacterium NOR5-3]
          Length = 918

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 74/274 (27%), Gaps = 73/274 (26%)

Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT------ 208
           +I+  +I+    +   GA     T    ++ +   LLLD      +E+ G  R       
Sbjct: 281 DIFGSMIQAVADDDERGALGMHYTSVPNILKVLNPLLLDDLREKLEEAGGNSRKLLNLRN 340

Query: 209 ------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----------LVPHGQELEPETH 252
                 ++DP CG+G FL  A   +    +                     G EL     
Sbjct: 341 RMSKIRVFDPACGSGNFLVIAYKEMRAIEAVINERREEAEQRSVIPLTNFRGIELRDFPA 400

Query: 253 AVCVAGMLIRRLESDPRRDLSKN-------------IQQGSTLSKDL------------- 286
            +    ++I   + D      +              I  G+ L  D              
Sbjct: 401 EIARLALIIAEYQCDLLYRGQQEAVRDFLPLEAMNWITCGNALRLDWSSICPPTGEAVKL 460

Query: 287 FTGKRFH-----------------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
                F                  Y   NPP+     +     +   +      F P L 
Sbjct: 461 HGDDLFSTPLDQAEIDFENEGGETYVCGNPPYQGSVNQTPGQKDDMRRI-----FVPVLK 515

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
           +  D   +    +          G ++A V ++S
Sbjct: 516 RYKDLDYI-AAFMLLAARFNATTGAKSAFVTTNS 548


>gi|29350035|ref|NP_813538.1| DNA modification methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29341947|gb|AAO79732.1| DNA modification methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 991

 Score = 40.3 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%)

Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            GLL  + + NF+  E  P+     V   ++  I+E+L+     E ++    F TP+++V
Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406

Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217
                                      +   D +   E    I        + DP  G+G
Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466

Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            F    +            N V +  +  +       +G ++E     +      +  + 
Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526

Query: 266 SDPRRDLSKN----IQQGSTLSK 284
            +   +   N    I QG++L +
Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549


>gi|237710844|ref|ZP_04541325.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454688|gb|EEO60409.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 1281

 Score = 40.3 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   +SN PFG     D +            R              FL     K     
Sbjct: 189 RFDLAISNIPFGDIAVFDPEYANGSVFKKIAARKVHT--------YFFL-----KGLDAV 235

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   L     G     + R   + DL+ A + LP +LF     T +   L
Sbjct: 236 RDGGIVAFITSQGVLNTESNGGTRYMMTR---KADLVSA-IRLPNNLFTEDANTEVGCDL 291

Query: 408 WILSNRKTEE 417
            IL   + +E
Sbjct: 292 IILQKNEGKE 301


>gi|304440078|ref|ZP_07399970.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
 gi|304371445|gb|EFM25059.1| superfamily II DNA and RNA helicase [Peptoniphilus duerdenii ATCC
            BAA-1640]
          Length = 2076

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 59/256 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+    + +         
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFIGSMPSEIQSSK----- 886

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G E +  +  +                    NI Q     +  F+   F   +
Sbjct: 887  -----VYGVEKDSLSGRIAR------------ELYPEANI-QIKGFEETNFSNNFFDLVI 928

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG     D++         +                        K       GG  
Sbjct: 929  GNVPFGDFKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGII 968

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +R+++         + LP  +F     T + + +  L  R
Sbjct: 969  AFIT-----SSGTMDKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDIIFLKKR 1023

Query: 414  KTEERRGKVQLINATD 429
             +   R    +  ATD
Sbjct: 1024 DSVIERDDDWIHLATD 1039


>gi|298385283|ref|ZP_06994842.1| DNA methylase [Bacteroides sp. 1_1_14]
 gi|298262427|gb|EFI05292.1| DNA methylase [Bacteroides sp. 1_1_14]
          Length = 1882

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   +SN PFG     D +            R              FL     K     
Sbjct: 89  RFDLAISNIPFGDIAVFDPEYANGSVFKKIAARKVHT--------YFFL-----KGLDAV 135

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   L     G     + R   + DL+ A + LP +LF     T +   L
Sbjct: 136 RDGGIVAFITSQGVLNTESNGGTRYMMTR---KADLVSA-IRLPNNLFTEDANTEVGCDL 191

Query: 408 WILSNRKTEE 417
            IL   + +E
Sbjct: 192 IILQKNEGKE 201


>gi|237725678|ref|ZP_04556159.1| DNA methylase BmhA [Bacteroides sp. D4]
 gi|317474062|ref|ZP_07933341.1| hypothetical protein HMPREF1016_00320 [Bacteroides eggerthii
           1_2_48FAA]
 gi|229435486|gb|EEO45563.1| DNA methylase BmhA [Bacteroides dorei 5_1_36/D4]
 gi|316909904|gb|EFV31579.1| hypothetical protein HMPREF1016_00320 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1974

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 42/130 (32%), Gaps = 20/130 (15%)

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           RF   +SN PFG     D +            R              FL     K     
Sbjct: 181 RFDLAISNIPFGDIAVFDPEYANGSVFKKIAARKVHT--------YFFL-----KGLDAV 227

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYL 407
             GG  A + S   L     G     + R   + DL+ A + LP +LF     T +   L
Sbjct: 228 RDGGIVAFITSQGVLNTESNGGTRYMMTR---KADLVSA-IRLPNNLFTEDANTEVGCDL 283

Query: 408 WILSNRKTEE 417
            IL   + +E
Sbjct: 284 IILQKNEGKE 293


>gi|170761675|ref|YP_001788746.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169408664|gb|ACA57075.1| putative site-specific DNA-methyltransferase
           restriction-modification protein [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 472

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 94/286 (32%), Gaps = 49/286 (17%)

Query: 176 DFMTPRD-VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL-TDAMNHVADC--- 230
              TP D VV L   +    D           + + +  CG G  L      ++ D    
Sbjct: 6   QVFTPSDKVVELLDRVGYVKDL--------YGKKVIENACGNGNILKVIVDRYIRDSLSA 57

Query: 231 ---GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
                  K+      +G E++ E +  C+  + +   + D      K I     L + L 
Sbjct: 58  NIPIQSIKLGLESDIYGAEIDKEHYIKCIENLDLVANKYDIHNVSWK-ILNVDILKERLQ 116

Query: 288 TGKRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +F Y + NPP+    + D   +  V++ ++    G+F        D    F+     
Sbjct: 117 --GKFDYVIGNPPYITYRDLDNQTRKFVKENYEVCAKGKF--------DYCYAFIEASIK 166

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            L    N  G+ A ++ SS   N  A      + ++L +    +        +F     +
Sbjct: 167 CL----NNNGKLAYLIPSSIFKNVFAQRLRDYMLKYLCKIYDYKT-----KRVFKNVVTS 217

Query: 405 TYLWILSNRK----------TEERRGKVQLINATDLWTSIRNEGKK 440
           + + IL               ++   K++  N T  W   R    K
Sbjct: 218 SAIIILDKGNESDEITYSDIAQKVSWKIKKFNLTGKWVFKRKVDNK 263


>gi|91204256|emb|CAJ71909.1| hypothetical protein kustc1164 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1013

 Score = 40.3 bits (93), Expect = 0.98,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 56/175 (32%), Gaps = 31/175 (17%)

Query: 35  ILPFTL--LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLG 92
           IL  T   L RL       R  V  + ++ G          K  G+  Y       + L 
Sbjct: 85  ILGLTFTHLNRLVALKLMERRKVIRETVSRGS---------KSNGFVHYVVDVLKKTDLS 135

Query: 93  S-TNTRNNLESYI----ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHP 147
              +     + YI       ++  K +F+  D SS +    +A  L  + +  +  E+  
Sbjct: 136 QLDDIDIAYQDYILYQCREVAEEIKVLFDQEDLSSYVFPRPRA--LKAVLEIINNPEIDN 193

Query: 148 DTVPDRVMSNIYEHL----IRRFGSEVSEGA---------EDFMTPRDVVHLATA 189
               D  +  IY++     IR      S              F TPR VV   T 
Sbjct: 194 IWDFDETIGWIYQYFTPKEIREQARAESSAPRNSWELAFRNQFYTPRYVVQFLTD 248


>gi|303235670|ref|ZP_07322277.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
 gi|302484117|gb|EFL47105.1| N-6 DNA Methylase [Prevotella disiens FB035-09AN]
          Length = 1452

 Score = 40.3 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 77/255 (30%), Gaps = 52/255 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHN 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++   ++L   T        ++R L    +       +     +        F   
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPGKKTRTCGFEKIERPFNN------YFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D +      ++   GR                 +   K       GG 
Sbjct: 194 VSNIPFGDIAVFDPEFQ----RSDSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSTKTSVRNELFSKADLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 R--KTEERRGKVQLI 425
              K E  + +  + 
Sbjct: 297 NLSKKEMSQDERLMT 311


>gi|208434400|ref|YP_002266066.1| type II adenine specific methyltransferase [Helicobacter pylori
           G27]
 gi|208432329|gb|ACI27200.1| type II adenine specific methyltransferase [Helicobacter pylori
           G27]
          Length = 545

 Score = 40.3 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LEILENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP  G+G F+  A+              +   +G + +    A+       +
Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----K 176

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R++     D   NI Q         T  +F    +NPP+GKK+ +++    +  K     
Sbjct: 177 RIKERYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN- 229

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
                L +  D + LF +   N L+   + G
Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|307244223|ref|ZP_07526338.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
 gi|306492373|gb|EFM64411.1| N-6 DNA Methylase [Peptostreptococcus stomatis DSM 17678]
          Length = 2909

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 71/249 (28%), Gaps = 59/249 (23%)

Query: 176  DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             F TP+ V+                        + +P+ G G F+ +  + ++       
Sbjct: 1178 AFYTPKTVIDSVYK--------TLAGMGFKSGNILEPSMGVGNFIGNLPDEMSKLK---- 1225

Query: 236  IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   +G EL+  +  +                +    I+      +  F+   F   
Sbjct: 1226 ------FYGVELDSVSGRIGKL----------LYPESEVQIKG---FEETTFSNNFFDAV 1266

Query: 296  LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            + N PFG+    D++  +      +                        K       GG 
Sbjct: 1267 IGNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGV 1306

Query: 356  AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
             A +       +G     +  +RR+L         + LP D+F     T + + +  L  
Sbjct: 1307 IAFIT-----SSGTMDKKDESVRRYLAARTEFLGAIRLPNDIFKGVAGTEVTSDIIFLKK 1361

Query: 413  RKTEERRGK 421
            R +   R +
Sbjct: 1362 RDSIRERDE 1370


>gi|293371761|ref|ZP_06618171.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292633213|gb|EFF51784.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 1944

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 85/257 (33%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTLA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PDADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D    + E +  +   FG    + +  +  FL     K       G
Sbjct: 192 LAVSNIPFG-----DIAVFDAEFERSDS--FGRRSAQKAIHNYFFL-----KGLDTVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S +  +R  L     + + + LP +LF     T + + L +L
Sbjct: 240 GIVAFITSQGVL-----NSTKISVRNELFRQASLVSAIRLPNNLFTDNAGTEVGSDLIVL 294

Query: 411 SN--RKTEERRGKVQLI 425
                KTE  + +  + 
Sbjct: 295 QKNLNKTEMSQDERLMT 311


>gi|238801686|ref|YP_002922742.1| gp70 [Burkholderia phage BcepIL02]
 gi|237688061|gb|ACR15063.1| gp70 [Burkholderia phage BcepIL02]
          Length = 4667

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 62/253 (24%), Gaps = 57/253 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             ++            T   V+               +        + +P  G G F    
Sbjct: 1755 EQYEQAKRTTQYAHYTSEGVIRSIY--------DGLRRLGFAGGKVLEPGMGIGLFKGLM 1806

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             + +A               G E +  T A+                    NI  G   +
Sbjct: 1807 PDSMAA---------TSQYTGVEYDALTGAIAK------------LLYPQSNIIVGD-FT 1844

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            K     + F   + NPPF      +    +K+        F   + ++            
Sbjct: 1845 KTAMPREFFDAAIGNPPFASVVVTNDPEYKKQGFMLHDYFFAKTIDRVK----------- 1893

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
                     GG    V S   +            RR+L +   +   + LP   F     
Sbjct: 1894 --------PGGMLVFVTSKGTM-----DKASDRARRYLADRANLIGAMRLPQTAFKDNAG 1940

Query: 401  TNIATYLWILSNR 413
            T + T +  L  R
Sbjct: 1941 TEVVTDVLFLQKR 1953


>gi|262199721|ref|YP_003270930.1| hypothetical protein Hoch_6570 [Haliangium ochraceum DSM 14365]
 gi|262083068|gb|ACY19037.1| hypothetical protein Hoch_6570 [Haliangium ochraceum DSM 14365]
          Length = 926

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 53/182 (29%), Gaps = 27/182 (14%)

Query: 153 RVMSNIYEHLIRR---------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             + + YEHL+ R                     + +  + TP  +V    A  LDP   
Sbjct: 211 DELGSAYEHLLARQPIFVGQAPDFLLRPAPEHARKRSGSYYTPAALVEELLAATLDPALE 270

Query: 198 LFKESPGMIR-----TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252
               +P          + DP CG G  L  A   +A   +H +         Q       
Sbjct: 271 RAARAPDPAAAILALRVCDPACGAGNVLVAAARRMAARLAHARGRGDDPAARQLALRAIV 330

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH--YCLSNPPFGKKWEKDKD 310
           A C     I  ++ DP       I      ++      RF       N   G    + ++
Sbjct: 331 ARC-----IHGVDIDPMAAELCKISLWLAAAEPGTGPGRFDSRIQCGNAVLGATPAQMRE 385

Query: 311 AV 312
            +
Sbjct: 386 GI 387


>gi|145343474|gb|ABP65247.1| HP0478-like protein [Helicobacter pylori]
          Length = 538

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSCYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDVSQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++    +  K         
Sbjct: 181 RYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN----- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHWG 255


>gi|313633072|gb|EFR99978.1| N-6 DNA methylase [Listeria seeligeri FSL N1-067]
          Length = 339

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 77/256 (30%), Gaps = 40/256 (15%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +  +   LL                ++ DP CGT   LT  +N +       K
Sbjct: 98  HQMTPDSIGFIVAYLL------EKVIQKKKNVSILDPACGTANLLTTVINQL-----ELK 146

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +   G +++    ++      +   +   ++     +     L+  L         
Sbjct: 147 DGLEIHASGVDVDDLLISLA-----LVGADLQRQKMT---LLHQDGLANLLVDPVDVVVS 198

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
                F   +  D++A   E    E   F            LF+       +        
Sbjct: 199 DLPIGF---YPDDENAKSFELCREEGHSF---------AHFLFIEQGMRYTKPGGYLFFL 246

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
               +  +  F        +++ +++ +N  IE I+ LP  LF        + IL     
Sbjct: 247 VTDAMFGTSDF--------AKVDKFIKKNGHIEGIIKLPETLFKSEQARKSILILRKAAE 298

Query: 416 E-ERRGKVQLINATDL 430
             +   +V L N + L
Sbjct: 299 NVKPPKEVLLANLSSL 314


>gi|157953403|ref|YP_001498294.1| hypothetical protein AR158_C212L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068051|gb|ABU43758.1| hypothetical protein AR158_C212L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 382

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 80/268 (29%), Gaps = 68/268 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++   +       F TP+D+      ++ +  D +    P     + +PTCGTG F+ D 
Sbjct: 13  KQLSKQERSTGGVFFTPKDIR----DIIFEELDRISDFEPK---NILEPTCGTGEFIDDC 65

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                      ++       G E++P +  +                D    I     ++
Sbjct: 66  R----------RVYENAHILGVEIDPRSAELAR-------------DDSKNEIIVHDFIT 102

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
               T ++F   + NPPF  +    +                     +   S + +  + 
Sbjct: 103 --WNTTEKFDLIIGNPPFFTRPSGFRHDPNV----------------VKCRSNICIEVVH 144

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNG--------RAGSGESEIRRWLLENDLIEAIVALPT 395
             +       G  A+VL  S L +            + +    R + +N+          
Sbjct: 145 KCMTGHLAENGILAMVLPMSLLNSKFYTPTVDRITTTMDVMFVREIKKNN---------- 194

Query: 396 DLFFRTNIATYLWILSNRKTEERRGKVQ 423
             F  TN+   ++I+           + 
Sbjct: 195 --FMGTNVRVMVFIIRKCPPRVDNTYIF 220


>gi|330997645|ref|ZP_08321490.1| hypothetical protein HMPREF9442_02590 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329570173|gb|EGG51913.1| hypothetical protein HMPREF9442_02590 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 1053

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%)

Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            GLL  + + NF+  E  P+     V   ++  I+E+L+     E ++    F TP+++V
Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406

Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217
                                      +   D +   E    I        + DP  G+G
Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466

Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            F    +            N V +  +  +       +G ++E     +      +  + 
Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526

Query: 266 SDPRRDLSKN----IQQGSTLSK 284
            +   +   N    I QG++L +
Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549


>gi|261837885|gb|ACX97651.1| adenine methyltransferase [Helicobacter pylori 51]
          Length = 545

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 43/235 (18%)

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178
            +L K     L  +  +   I  +   + +      + + YE       +        + 
Sbjct: 58  NKLNKYANKSLKGVHNHQELILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYY 114

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V     L   P D    ++        DP  G+G F+  A+              
Sbjct: 115 TPNKIVE---QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALKL---------GFK 157

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +   +G + +    A+       +R++     D   NI Q         T  +F    +N
Sbjct: 158 VKNIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTN 209

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+GKK+ +++       K     RF   L +  D + LF +   N L+   + G
Sbjct: 210 PPWGKKYNQNQ-------KENFKQRFN--LSQSLDSTSLFFIASLNCLKENAHLG 255


>gi|298480706|ref|ZP_06998902.1| type IIS restriction endonuclease [Bacteroides sp. D22]
 gi|298273140|gb|EFI14705.1| type IIS restriction endonuclease [Bacteroides sp. D22]
          Length = 1053

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 66/203 (32%), Gaps = 53/203 (26%)

Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
             LL  + + NF+  E  P+     V   ++  I+E+L+     E ++    F TP+++V
Sbjct: 352 NSLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406

Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217
                                      +   D +L  E    I        + DP  G+G
Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASLLGELKEYIDQKLCNVKICDPAIGSG 466

Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            F    +            N + +  +  +       +G ++E     +      +  + 
Sbjct: 467 AFPMGLLRELFFCRSAIEPNIIENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526

Query: 266 SDPRRDLSKN----IQQGSTLSK 284
            +   +   N    I QG++L +
Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549


>gi|219871162|ref|YP_002475537.1| hypothetical protein HAPS_0963 [Haemophilus parasuis SH0165]
 gi|219691366|gb|ACL32589.1| hypothetical protein HAPS_0963 [Haemophilus parasuis SH0165]
          Length = 535

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 79/293 (26%), Gaps = 66/293 (22%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTR 97
           +L RL  + +     + ++         D  +  +    + Y   TS   +  L +    
Sbjct: 6   VLFRLSESDKGQNQDIEKRRKKLSEIFSDNINNNEKEYLALYVLQTSYAIIVKLIACKVI 65

Query: 98  NNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK----------------------- 129
             L     SFS++ K     +I +       + +LE                        
Sbjct: 66  QTL-----SFSEDVKFFSDLSIIDSIKLQRFMEKLEDGYVFSSGGIRNLLEGDFYSWYSD 120

Query: 130 ----AGLLYKICKNF-------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                  +Y   KN        S      +     +  ++Y  ++     E+     ++ 
Sbjct: 121 KNQWNPKIYNSIKNIIKELEFYSSSNFSYEFQTIDIFKDLYMEIMPN---EIRHSLGEYF 177

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HH 234
           TP  +     +          ++         DP CG+G FL   +  + D         
Sbjct: 178 TPSWMADHVVS-------RSLEKLNKESWKAIDPCCGSGVFLISLIKSILDKHELYSLTI 230

Query: 235 KIPPI------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           K             +G +L P +         +        + +   +  G +
Sbjct: 231 KEKQELLLRILSSVYGIDLNPLSVLTARVSYFLAIRPLIDEQKIEIPVYLGDS 283


>gi|110669156|ref|YP_658967.1| type II restriction/modification enzyme [Haloquadratum walsbyi DSM
           16790]
 gi|109626903|emb|CAJ53372.1| probable type II restriction/modification enzyme [Haloquadratum
           walsbyi DSM 16790]
          Length = 1351

 Score = 40.3 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 26/137 (18%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIR--------TLYDPTCGTGGFLTD 222
           +    + T   +V       L P  +   +++             ++ DP  G+G FL  
Sbjct: 488 KETGSYYTDPGLVQELVQSALKPVVEDRLEDADTATEKEDALLDISVCDPASGSGAFLIA 547

Query: 223 AMNHV---------------ADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRR-LE 265
           A N +                D     +   +    +  +L P    +    + I   +E
Sbjct: 548 ANNFLGQRLARIRSGGNYPPEDQIREARRDVLQHCIYAVDLNPMAVELAKVSLWINSAVE 607

Query: 266 SDPRRDLSKNIQQGSTL 282
             P   L  +I+ G++L
Sbjct: 608 DKPLNFLDHHIKCGNSL 624


>gi|317011160|gb|ADU84907.1| hypothetical protein HPSA_04625 [Helicobacter pylori SouthAfrica7]
          Length = 2802

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 122/415 (29%), Gaps = 80/415 (19%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 957  EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1008

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P              + ++  + L  N    +T  +
Sbjct: 1009 -------AHAPSDKNYRFIGTELDP--------------ISANISQFLYPNQVIQNTALE 1047

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
            +    + +   +  PP+G       +  E  +++                   FL     
Sbjct: 1048 NHHFYQEYDAFVGIPPYGNHKIYSSNDKELSNESVHNY---------------FLGKAIK 1092

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+  S  F         + R ++++N      + LP  +F  T   
Sbjct: 1093 ELKDD----GIGAFVV--SSWFMDGKNP---KTREYIVQNATFLGAIRLPNSVFKATGTE 1143

Query: 405  TY--LWILSNR----------KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQI 452
                +                K     GK+  I++ D  T    +  +        + +I
Sbjct: 1144 VSSDIVFFKKGVDEAIHQSFTKAMPYYGKI--IDSLDDDTLFALQNNRFDSFIPSDQLKI 1201

Query: 453  LDI---YVSRENGKFSRML---DYRTFGY----RRIK---VLRPLRMSFILDKTGLARLE 499
            ++    +   +  K  R     D   FGY     +I    + R    +  L++  L    
Sbjct: 1202 VNAIASHFGFKQEKLQRWYEKIDTANFGYSEQDYKIIKDFMDRVGENNINLNEQTLNEYF 1261

Query: 500  ADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASK 554
             +     L  L         +   +QIY Y       K    S        K  K
Sbjct: 1262 INHPENILGHLSLEKTRYSFEINGEQIYKYELQALENKSLDLSQALSQAIEKLPK 1316


>gi|126651362|ref|ZP_01723569.1| hypothetical protein BB14905_12370 [Bacillus sp. B14905]
 gi|126591891|gb|EAZ85974.1| hypothetical protein BB14905_12370 [Bacillus sp. B14905]
          Length = 309

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+    N  +            L+ S LF+        ++ +++ ++  I+AI+ LP  
Sbjct: 203 LFIEQSMNYTKEGGYL-----FFLAPSHLFDSEQS---KQLHKYIQKHAWIQAIIQLPDS 254

Query: 397 LFFRTNIATYLWILSNR-KTEERRGKVQLINATDL 430
           +F   ++   + IL  + K  +   +V L    ++
Sbjct: 255 MFANKSLEKSIVILQKQSKECKSPKEVLLAKVPNM 289


>gi|55822820|ref|YP_141261.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
 gi|55738805|gb|AAV62446.1| type I restriction-modification system methyltransferase subunit,
           truncated [Streptococcus thermophilus CNRZ1066]
          Length = 147

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/106 (9%), Positives = 19/106 (17%), Gaps = 8/106 (7%)

Query: 16  WKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR--EKYLAFGGSNIDLESFV 73
           W       G    T +   I      + L          V   + +    G +       
Sbjct: 2   WTLLNKTRGQIGLTAYKDYIFGLLFYKYLSEKATQWLGEVLRGDTWENVYGQDPVRALDY 61

Query: 74  KVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD 119
                 +    +       +T                    F  F+
Sbjct: 62  MKQKLGYAIQPKEFFKDWEATIHEERFNI------PMISDTFGHFN 101


>gi|329940572|ref|ZP_08289853.1| hypothetical protein SGM_5345 [Streptomyces griseoaurantiacus M045]
 gi|329300633|gb|EGG44530.1| hypothetical protein SGM_5345 [Streptomyces griseoaurantiacus M045]
          Length = 1346

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 43/153 (28%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT------------------LYD 211
               A    TPR +        L+P       SPG  +T                  + D
Sbjct: 563 SRASAGAHYTPRSLAEEVVRYALEP----LVYSPGPHQTADQDAWRPIDSDQILDLRIAD 618

Query: 212 PTCGTGGFLTDAMNHVAD--------------------CGSHHKIPPILVPHGQELEPET 251
             CG+G FL  A  ++AD                         +       +G ++    
Sbjct: 619 IACGSGAFLVAAARYLADRLVEAWQREGVAYGRTPHDLHVHAIRTVVATCLYGADINGMA 678

Query: 252 HAVCVAGMLIRRLESD-PRRDLSKNIQQGSTLS 283
             +C   + +  L+   P   +   +  G+ L 
Sbjct: 679 VEMCKLSLWLVSLDPKLPFSFVDDKVLHGNALL 711


>gi|317181797|dbj|BAJ59581.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F57]
          Length = 545

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 43/235 (18%)

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178
            +L K     L  +  +   I  +   + +      + + YE       +        + 
Sbjct: 58  NKLNKYANKSLKGVHNHQELILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYY 114

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V     L   P D    ++        DP  G+G F+  A+              
Sbjct: 115 TPNKIVE---QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALKL---------GFK 157

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +   +G + +    A+       +R++     D   NI Q         T  +F    +N
Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTN 209

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+GKK+ +++    +  K          L +  D + LF +   N L+   + G
Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|312143636|ref|YP_003995082.1| rRNA (guanine-N(2)-)-methyltransferase [Halanaerobium sp.
           'sapolanicus']
 gi|311904287|gb|ADQ14728.1| rRNA (guanine-N(2)-)-methyltransferase [Halanaerobium sp.
           'sapolanicus']
          Length = 379

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 21/140 (15%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP---PILVPHGQELEPETHAVCVAG--- 258
             R L DP CG+G  L +A     +     K              L  +T          
Sbjct: 190 KDRILIDPFCGSGTILIEAAMIAKNQAPGLKRNFISEKWPIFDNMLWAKTRVEAKKAKKI 249

Query: 259 ----MLIRRLESDPRRDLSKN-----------IQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
                LI   + DP                  I       +D  + +++ Y ++NPP+GK
Sbjct: 250 DVEPRLIMGYDHDPEAISIARYHAKKAGVDDLIHFQEKKFEDFSSSRKYGYIITNPPYGK 309

Query: 304 KWEKDKDAVEKEHKNGELGR 323
           +    ++      K GE  R
Sbjct: 310 RMSDQEEVEALYKKMGEKFR 329


>gi|326790731|ref|YP_004308552.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium lentocellum DSM 5427]
 gi|326541495|gb|ADZ83354.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Clostridium lentocellum DSM 5427]
          Length = 290

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 78/273 (28%), Gaps = 53/273 (19%)

Query: 110 NAKAIFEDFDFSSTI-------ARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN--IYE 160
           N ++IFE   +   I            A LL K    F+  +L  +           IY+
Sbjct: 5   NPQSIFEWMKWGEEILDEKGRPDSAIDAKLLMKYVLAFNETQLLLERQKRLDEGMQQIYK 64

Query: 161 HLIRR---------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
            LI +               F     +  E  + PR         LL+ +          
Sbjct: 65  SLIEKRSSGIPLQQLTGTQEFMGLEFQVNEHVLIPRQDTETLIEELLEQNKNFS------ 118

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            +   D   G+G        ++ +                ++  E   V    +    LE
Sbjct: 119 FKRGIDIGTGSGCISITLAYYIKEL----------TMCAIDISEEALKVARHNIQKHDLE 168

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFG 325
                  S        + ++    ++    +SNPP+  K E +   +E     G   R  
Sbjct: 169 KRIYTLKSD-------VLENYAEEEKVDLIVSNPPYISKEEVETLMIEV---IGHEPR-- 216

Query: 326 PGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
             L    DG + F   ++   +     GG  A 
Sbjct: 217 EALTDEGDG-LSFYKRISKAAKSYLKKGGVIAY 248


>gi|253572782|ref|ZP_04850182.1| BmhA [Bacteroides sp. 1_1_6]
 gi|304382595|ref|ZP_07365089.1| exopolyphosphatase [Prevotella marshii DSM 16973]
 gi|325858280|ref|ZP_08172557.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
 gi|251837682|gb|EES65773.1| BmhA [Bacteroides sp. 1_1_6]
 gi|304336220|gb|EFM02462.1| exopolyphosphatase [Prevotella marshii DSM 16973]
 gi|325483087|gb|EGC86071.1| helicase C-terminal domain protein [Prevotella denticola CRIS
           18C-A]
          Length = 1946

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 77/255 (30%), Gaps = 52/255 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARMLEPSAGVGVFV--------DSMLRHN 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               ++   ++L   T        ++R L    +       +     +        F   
Sbjct: 148 PNADVMAFEKDLLTGT--------ILRHLYPGKKTRTCGFEKIERPFNN------YFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D +      ++   GR                 +   K       GG 
Sbjct: 194 VSNIPFGDIAVFDPEFQ----RSDSFGRRS--------AQKAIHNYFFLKGLDAVRDGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L      S ++ +R  L     + + + LP +LF     T + + L +L  
Sbjct: 242 VAFITSQGVL-----NSTKTSVRNELFSKADLVSAIRLPNNLFTDNAGTEVGSDLIVLQK 296

Query: 413 R--KTEERRGKVQLI 425
              K E  + +  + 
Sbjct: 297 NLSKKEMSQDERLMT 311


>gi|210134683|ref|YP_002301122.1| type II R-M system methyltransferase [Helicobacter pylori P12]
 gi|210132651|gb|ACJ07642.1| type II R-M system methyltransferase [Helicobacter pylori P12]
          Length = 545

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSHYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
            T  DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -TFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++    +  K         
Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN----- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|207092523|ref|ZP_03240310.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 518

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 74/211 (35%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LEMLENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTFPKDFDASQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP  G+G F+  A+              +   +G + +    A+       +
Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R++     D   NI Q         T  +F    +NPP+GKK+ +++    K+  N    
Sbjct: 177 RIKERYHLDC-PNIAQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKETFKQKFN---- 229

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
                L +  D + LF +   N L+   + G
Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|265751740|ref|ZP_06087533.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236532|gb|EEZ22002.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1938

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 82/257 (31%), Gaps = 56/257 (21%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP+++              +  +       + +P+ G G F+        D    H 
Sbjct: 104 AFYTPKEITDTIA--------DVLADYSVRPARILEPSAGVGVFV--------DSVLRHS 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESD--PRRDLSKNIQQGSTLSKDLFTGKRFH 293
               ++   ++L   T        ++R L  D   R    + I++             F 
Sbjct: 148 PGADVMAFEKDLLTGT--------ILRHLYPDQKMRTCGFEKIER--------PFNNYFD 191

Query: 294 YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
             +SN PFG     D +      ++   GR                 +   K       G
Sbjct: 192 LAVSNIPFGDIAVFDPEFQ----RSDSFGRRS--------AQNAIHNYFFLKGLDAVRDG 239

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWIL 410
           G  A + S   L      S ++ +R  +     + + + LP +LF     T + + L IL
Sbjct: 240 GIVAFITSQGVL-----NSTKTSVRDEMFRQAHLVSAIRLPNNLFTDNAGTEVGSDLIIL 294

Query: 411 SN--RKTEERRGKVQLI 425
               +KTE  + +  + 
Sbjct: 295 QKDLKKTEMSQDERLMT 311


>gi|323141513|ref|ZP_08076400.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
            12067]
 gi|322414007|gb|EFY04839.1| helicase C-terminal domain protein [Phascolarctobacterium sp. YIT
            12067]
          Length = 1632

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 60/232 (25%), Gaps = 45/232 (19%)

Query: 105  ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
             +F    + + E F                 + +   GI+        +V+  +Y+   +
Sbjct: 837  DAFDKEQQDVMERFY--------------KSVKERCEGID--NAAGKQKVIVELYDKFFK 880

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++  E      TP +VV      + D       +        + DP  GTG F+T  
Sbjct: 881  KALAKTVEKLGIVYTPVEVVDFINQSVADVLRKEFNRSISDENIHVIDPFTGTGTFITRL 940

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLSK--NIQQG 279
            +          +       H  E+    + +    +      +        +    I   
Sbjct: 941  LQSGLIKPQDIERKYKHELHANEIVLLAYYIASINIENAFHDVAKQENGTYTPFDGICLT 1000

Query: 280  STL--SKDLFTGKR----------------------FHYCLSNPPFGKKWEK 307
             T    +D                                + NPP+ +  + 
Sbjct: 1001 DTFQMYEDKDNDVERLKFADVFPQNSQRVIAQSKVPMRVIIGNPPYSRTQKS 1052


>gi|237784930|ref|YP_002905635.1| hypothetical protein ckrop_0309 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237757842|gb|ACR17092.1| hypothetical protein ckrop_0309 [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 943

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 52/224 (23%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKES 202
             V   +  ++++ +++   +          T    +      L   D     D+ +   
Sbjct: 299 KDVNPDIFGSMFQAVVQ---TGSRSELGQHYTSVPNILKTIEPLFLDDLKEQFDSAYNSV 355

Query: 203 PGMIR--------TLYDPTCGTGGFLTDAMNHVADCGSHH-----------------KIP 237
           P + +         ++DP CG+G FL  A   +                         + 
Sbjct: 356 PRLEKLLSRIADIKIFDPACGSGNFLVIAYKELRRLEHAILDRLAYLSPKHQTLFSDSVV 415

Query: 238 PILVPHGQELEPETHAVCVAGMLI--RRLESDPRRD-----------LSKNIQQGSTLSK 284
            I   +G E++     V +  + I   ++  +                   I   +    
Sbjct: 416 KIDHFYGIEIDDFATEVAILALWIAKHQMNQEYLDKFGFQLPMIPLRSMGQITCANACRI 475

Query: 285 DL-----FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           D         +   Y +SNPP+           +++      GR
Sbjct: 476 DWQEVCPHQTEDEVYLISNPPY-LGSSMQTKEQKEDLAATYAGR 518


>gi|283769151|ref|ZP_06342055.1| N-6 DNA Methylase [Bulleidia extructa W1219]
 gi|283104127|gb|EFC05506.1| N-6 DNA Methylase [Bulleidia extructa W1219]
          Length = 2908

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 107/386 (27%), Gaps = 72/386 (18%)

Query: 44   LECALEPTRSAVREKYLAFG-GSNIDLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLE 101
            +   LE     V +          I+     K   ++F  T E     L       NNLE
Sbjct: 1048 ISYRLESDLERVFQNLTYTKLEKTIEEVEIKKTEAHNFKITEETLPEKLSPSERLNNNLE 1107

Query: 102  --SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
              S +       + +      S+    L K      +   F       +   +   S + 
Sbjct: 1108 VISMLNRVESGQREL-----DSTAQETLAKYVGWGGLADVFDE---SKEGQWEVARSFLK 1159

Query: 160  EHLI-RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
            E+L    + +        F TP+ V+                +       + +P+ G G 
Sbjct: 1160 ENLSPSEYEAARESTLTSFYTPKAVIDSVYK--------TLSDMGFKSGNILEPSMGVGN 1211

Query: 219  FLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ 278
            F+ +  + +               +G EL+  +  +                +    I+ 
Sbjct: 1212 FIGNLPDEMKKSK----------FYGVELDSVSGRIGKL----------LYPESEVQIKG 1251

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                 +  F+   F   + N PFG+    D++  +      +                  
Sbjct: 1252 ---FEETTFSNNFFDAVIGNVPFGEYKVNDREYNKNNFLIHDY----------------- 1291

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
                  K       GG  A +       +G     +  +RR++         + LP D F
Sbjct: 1292 ---FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYIAARAEFLGAIRLPNDTF 1343

Query: 399  ---FRTNIATYLWILSNRKTEERRGK 421
                 T + + +  L  R +   R +
Sbjct: 1344 KGVAGTEVTSDIIFLKKRDSIRERDE 1369


>gi|195081752|ref|XP_001997355.1| GH11743 [Drosophila grimshawi]
 gi|193905442|gb|EDW04309.1| GH11743 [Drosophila grimshawi]
          Length = 486

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 60/207 (28%), Gaps = 21/207 (10%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI++   +  +   +      +  L     +  D  L          ++DP  GTG  L
Sbjct: 180 HLIQQLSLKQRKFIGNTSMDAQLSLLMANQAMVRDGDL----------VFDPFVGTGSLL 229

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 230 VSAAKFGGYVLGADIDFMMIHARCRPSRISQKVRDKDESIRANLKQYGCADRYMDVLVAD 289

Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML-- 337
             S  L+  +  F   +++PP+G +   +K   +   K           P  S  S+   
Sbjct: 290 -FSNPLWQTRIAFDSIITDPPYGIREATEKVENKSNAKENTRTAEMAHYPSTSHYSLQNL 348

Query: 338 ---FLMHLANKLELPPNGGGRAAIVLS 361
               L   A  L+     GGR    L 
Sbjct: 349 YADLLQFSATHLK----LGGRLVCWLP 371


>gi|116662287|ref|YP_829341.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
 gi|116613051|gb|ABK05760.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
          Length = 1613

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 69/248 (27%), Gaps = 39/248 (15%)

Query: 114  IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
            + E ++  S +  LE     Y+  +  +             ++ +YE   +      +E 
Sbjct: 791  VLEQYNLDSEVQNLED---FYRSVRVKAEGVGTAAGKQKI-ITELYEKFFKLAFPRTAES 846

Query: 174  AEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
                 TP +VV      + D     F  S       + DP  GTG F+   +        
Sbjct: 847  LGIVYTPVEVVDFILRAVDDVLKKEFGVSISDEGVHVLDPFTGTGTFVVRLLQSGLIKPE 906

Query: 233  HHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESD-----------PRRDLSKNIQQ- 278
                      H  EL    + +    +      + ++              +    I   
Sbjct: 907  DLLRKYTQELHANELLLMAYYIAAINIEATFHGILTEQAVEQGRDADTVGYESFGGIVLT 966

Query: 279  --------GSTLSKDLFTGKR----------FHYCLSNPPF--GKKWEKDKDAVEKEHKN 318
                    G TL + +FT                 + NPP+  G+    D +A  K    
Sbjct: 967  DTFQMTEDGDTLDEHVFTNNNDRVVKQNALDIRVIIGNPPYSVGQSSGNDNNANLKYPTL 1026

Query: 319  GELGRFGP 326
             E  R   
Sbjct: 1027 DESIRRSY 1034


>gi|108797790|ref|YP_637987.1| hypothetical protein Mmcs_0812 [Mycobacterium sp. MCS]
 gi|119866882|ref|YP_936834.1| hypothetical protein Mkms_0828 [Mycobacterium sp. KMS]
 gi|108768209|gb|ABG06931.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119692971|gb|ABL90044.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 1339

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 45/152 (29%), Gaps = 38/152 (25%)

Query: 170 VSEGAEDFMTPRDVVHLATALLLDP-------------DDALFKESPGMIR-TLYDPTCG 215
               A    TPR +        L+P             D+   K S  ++   + D   G
Sbjct: 563 SRRNAGAHYTPRPLAEEVVRYALEPVVYEPGPLQTNNIDEWKLKSSTAILDLKVADIAAG 622

Query: 216 TGGFLTDAMNHVADCGSH-----------------------HKIPPILVPHGQELEPETH 252
           +G FL  A   +A   +                         +       +G ++ P   
Sbjct: 623 SGAFLVAAARFLAKRVTEAWTKEGMLNEAERADPLIAEERAIREVVARCLYGADINPMAV 682

Query: 253 AVCVAGMLIRRLE-SDPRRDLSKNIQQGSTLS 283
            +C   + +  L+ + P   +   I  G++L 
Sbjct: 683 EMCKLSLWLVSLDKTKPFSFVDDKILCGNSLL 714


>gi|307244043|ref|ZP_07526162.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492567|gb|EFM64601.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Peptostreptococcus stomatis DSM 17678]
          Length = 300

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 77/290 (26%), Gaps = 40/290 (13%)

Query: 111 AKAIFEDFD----FSSTIARLEKAGLLYKIC--KNFSGIELHPDTVPDRVMSNIYEHLIR 164
            K I E +      +S  ARL+   +L  I        +  +   +    MS I+E +I 
Sbjct: 3   IKDIIEKYSGLLSATSPTARLDVEIILCHILGWDRVKLMINYGQDLDSDKMS-IFEDMIA 61

Query: 165 R---------------FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
           +               F        E  + PR    L    L++    +          +
Sbjct: 62  KRLDQMPIAYIINKKEFMGLDFYVDERVLIPRPDTELLVEDLVESIGEMESTKQARDINV 121

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPR 269
            D   G+G  +    +   D                 +      +  + + +  +     
Sbjct: 122 LDMCTGSGAIILSGASLWKDRAKEDSGKAK----DGTVNFIGVDISKSALEVATINRKSF 177

Query: 270 RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
              +  + +    +            +SNPP+ +    +    +         R    L 
Sbjct: 178 GLDTVKLIESDLFTNLGDYRGCLDIIVSNPPYIEDQVIEGLERDV---KDYEPR--LALA 232

Query: 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
             +DG M F   +          GG+          F       E  +++
Sbjct: 233 GGNDG-MDFYNRIIEDAYDYLKLGGKLV--------FESGHDQAEKILKK 273


>gi|291461471|dbj|BAI83353.1| conserved hypothetical protein [Macrococcus caseolyticus]
          Length = 549

 Score = 40.3 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 51/428 (11%), Positives = 115/428 (26%), Gaps = 90/428 (21%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           +  +   +    + TP  + +  T   +D +            ++ +P+CG G FLT   
Sbjct: 4   KTNTSDKKLRGAYYTPSSLANFMTNWAIDKN----------TYSILEPSCGDGVFLTSLS 53

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283
            +  D                                         D   ++        
Sbjct: 54  KYKNDFKCTAIEIFEEEYLKAHKN-------------------VGGDSRFDVINADFYRQ 94

Query: 284 -KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
            ++    K +   + NPP+ +      +   ++           G+   S+  +   +  
Sbjct: 95  FENDLKNKHYDLVIGNPPYIRYQYLSAEQRAEQSLILTDN----GM--KSNKLINAWVSF 148

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
                   N  G+ A+V+ +  L    A     ++R++L+++     I+     +F    
Sbjct: 149 TVASVQLMNSNGKIALVIPAELLQVKYAE----DLRKYLMKHLQKITIITFKKLIFPDVE 204

Query: 403 IATYLWILSNRKTEERRGKVQLINATDL--WTSIRNE-----------------GKKRRI 443
               + +      E    ++++I   D+  + ++                       R  
Sbjct: 205 QEVVVLLGEKISNETGTHQIRIIEYDDIADFDNLEKSSMPLNKVPFKDIDFNTTKWTRYF 264

Query: 444 INDDQRRQILDIYVSRENGKFSRMLD-----------------YRTFGYRRIKVLRPL-- 484
           ++ +Q   I  I   ++   FS + D                      Y   +V RPL  
Sbjct: 265 LSKNQIELINSIQKDKKFYPFSNIADVDIGITTGNNKYFCLDLNTVKAYDLFEVTRPLIA 324

Query: 485 -----------RMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
                         +  +    A         K      S   + ++         G+  
Sbjct: 325 RSVNISGITFNEKDWKYNIERGANTYLLDYNSKEYKELNSLQKEYIQLGEDNSENVGYKC 384

Query: 534 SFVKESIK 541
              KE  K
Sbjct: 385 RIRKEWFK 392


>gi|157952871|ref|YP_001497763.1| hypothetical protein NY2A_B567L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123098|gb|ABT14966.1| hypothetical protein NY2A_B567L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 371

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 75/251 (29%), Gaps = 64/251 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++ G +       F TP+ +      ++          +P    ++ +P+CG+G FL D 
Sbjct: 12  KKLGMKHRSKMGIFFTPKPLR----DIVFHH----IHINPQ---SVLEPSCGSGEFLIDC 60

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D              G EL+     V                     I     L+
Sbjct: 61  ETRFPDAN----------ITGVELDETLARVSKEN------------TSRSVIHTQDFLT 98

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            D     +F   + NPPF +       AV  +   G                 L++  L 
Sbjct: 99  FD---EGKFDLIIGNPPFVQM-----KAVNNQASTGRSN--------------LYIEILF 136

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFFRT 401
             +    N  G  A++L S+ +     G      R  +L   ++  E I       F  T
Sbjct: 137 KCMTRHLNDNGVLAMILPSTIMN----GHFSRPTRELILSKKILHFETI---REHTFKDT 189

Query: 402 NIATYLWILSN 412
                + ++ N
Sbjct: 190 KAGVSILVVQN 200


>gi|297583075|ref|YP_003698855.1| putative type II restriction enzyme methylase subunit [Bacillus
           selenitireducens MLS10]
 gi|297141532|gb|ADH98289.1| putative type II restriction enzyme (methylase subunit) [Bacillus
           selenitireducens MLS10]
          Length = 885

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 33/127 (25%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------LVPHGQELEPETHA 253
             +DP CG+G FL  A   +     +                       +G E++   + 
Sbjct: 336 KFFDPACGSGNFLIIAYKEMRRIEINIIKRLKEIRGDYLYMPSITLDQLYGIEIDEFAYE 395

Query: 254 VCVAGMLIRRLESDPRRDL--------------SKNIQQGSTLSKDLFT-----GKRFHY 294
           V +  + I   + +   +               S NI +G+ L  +         +   Y
Sbjct: 396 VALLSLWIADHQMNEELNNEIDNAVRPTLPLNISGNIHRGNALHMNWKNVCPNDPEDEVY 455

Query: 295 CLSNPPF 301
              NPP+
Sbjct: 456 VFGNPPY 462


>gi|166366002|ref|YP_001658275.1| DNA methylase [Microcystis aeruginosa NIES-843]
 gi|166088375|dbj|BAG03083.1| DNA methylase [Microcystis aeruginosa NIES-843]
          Length = 879

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 46/195 (23%), Gaps = 46/195 (23%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDP 212
              +         T    +      L   D     E     R                DP
Sbjct: 261 MNPKERRNLGAHYTSEKNIQKVIKPLFLDDLHREFEKIKGNRNKLLEFHKKIANLYFLDP 320

Query: 213 TCGTGGFLTDAMNHVADCG-----------------SHHKIPPILVPHGQELEPETHAVC 255
            CG G FL      + D                   S      +    G E +     V 
Sbjct: 321 ACGCGNFLIITYRELRDLEILVLQELDKTGQLVTDISTIIQVDVNQFAGIEYDEFAVRVA 380

Query: 256 VAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT---GKRFHYCLSNP 299
              M +   + + +                S  I  G+ L  D       ++ ++ L NP
Sbjct: 381 EVAMWLIDHQMNIKVSNTFGQYFVRLPLKKSAKIVNGNALRIDWEEVISKEKLNFILGNP 440

Query: 300 PFGKKWEKDKDAVEK 314
           PF     ++ D  E 
Sbjct: 441 PFVGHHYQNFDQKED 455


>gi|32266297|ref|NP_860329.1| hypothetical protein HH0798 [Helicobacter hepaticus ATCC 51449]
 gi|32262347|gb|AAP77395.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 1056

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 60/222 (27%), Gaps = 75/222 (33%)

Query: 109 DNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
           +    +FE+++F+                +  S  +     +   ++  ++E+LI     
Sbjct: 334 EAIFDVFENYNFT---------------IEE-STPDNQEIGIDPEMLGKVFENLI----- 372

Query: 169 EVSEGAEDFMTPRDVVHLAT----------------------------------ALLLDP 194
           + ++ +  F TPR++VH                                       +   
Sbjct: 373 DYNKSSGAFYTPREIVHFMCKNVLTRTLQERILHDESHLTQDTESPHAHKDSLYNFIFYK 432

Query: 195 DDALFKESPGMIRT-------LYDPTCGTG----GFLTDAMNHVADCGSHHKIPP----- 238
               F        T       + DP  G+G    G L++ +  +       +        
Sbjct: 433 QSDDFIAQNAKQLTQAITSLKILDPAIGSGAFPMGMLSEILEALHTLNPSLQKQDLARYK 492

Query: 239 ----ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
                   +G +++ +   +      +     +       N+
Sbjct: 493 REIIEQQIYGTDIDADAIEIAKLRFWLSIAVDEDTPSPLPNL 534


>gi|15645106|ref|NP_207276.1| adenine specific DNA methyltransferase (VSPIM) [Helicobacter pylori
           26695]
 gi|2313588|gb|AAD07545.1| adenine specific DNA methyltransferase (VSPIM) [Helicobacter pylori
           26695]
          Length = 545

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%)

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
           +E+  ++     + + YE       +        + TP  +V     L   P D    ++
Sbjct: 82  LEILENSSDLEKLGSYYEE---ELSNATRNLEGIYYTPNRIVE---QLFTLPKDFDVSQA 135

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                   DP  G+G F+  A+              +   +G + +    A+       +
Sbjct: 136 -----IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAVALTK-----K 176

Query: 263 RLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
           R++     D   NI Q         T  +F    +NPP+GKK+ +++    +  K     
Sbjct: 177 RIKERYHLDCL-NIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN- 229

Query: 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
                L +  D + LF +   N L+   + G
Sbjct: 230 -----LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|293369262|ref|ZP_06615851.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292635646|gb|EFF54149.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 308

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 57/245 (23%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351
           +SN PFG     D    + E    +         + S      +  FL     K      
Sbjct: 194 VSNIPFG-----DVAVFDPEFSGSKDP------ARHSAARTIHNYFFL-----KSLDAVR 237

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408
            GG  A + S   L         + IR +++ +  +  +  LP +LF     T + + L 
Sbjct: 238 EGGIVAFITSQGVL----DAPTNAPIREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLI 293

Query: 409 ILSNR 413
           IL   
Sbjct: 294 ILQKN 298


>gi|297588629|ref|ZP_06947272.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
 gi|297574002|gb|EFH92723.1| superfamily II DNA and RNA helicase [Finegoldia magna ATCC 53516]
          Length = 2556

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 59/256 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+    + +         
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFIGSMPSEIQSSK----- 886

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G E +  +  +                    NI Q     +  F+   F   +
Sbjct: 887  -----VYGVEKDSLSGRIAR------------ELYPEANI-QIKGFEETNFSNNFFDLVI 928

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG     D++         +                        K       GG  
Sbjct: 929  GNVPFGDFKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGII 968

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +R+++         + LP  +F     T + + +  L  R
Sbjct: 969  AFIT-----SSGTMDKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDIIFLKKR 1023

Query: 414  KTEERRGKVQLINATD 429
             +   R    +  ATD
Sbjct: 1024 DSVIERDDDWIHLATD 1039


>gi|313115520|ref|ZP_07800982.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622161|gb|EFQ05654.1| MutS domain I [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1139

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 92/339 (27%), Gaps = 82/339 (24%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + +  S       T   V+               +        + +P+ G G F     
Sbjct: 499 EYAAARSSTLNAHYTSPTVIR--------GIYDAVERMGFRSGNILEPSMGVGNFFGMLP 550

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQG 279
           + +               +G EL+  T  +       A + +   E+  RRD        
Sbjct: 551 DSM----------AGSRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF------- 593

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                       +   + N PFG+    DK      +K G            S  +  F 
Sbjct: 594 ------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFFA 626

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
             +          GG  A V            S +S  R+ + E   +   + LP + F 
Sbjct: 627 KAI-----DQVRPGGIVAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPNNAFR 676

Query: 399 --FRTNIATYLWILSNRKTEERRG--KVQLINATDLWT--------SIRNEGKKRRIIND 446
               T++ + +  L  R          VQL    D +              G+       
Sbjct: 677 ANAGTDVVSDIIFLQKRDRPADIEPAWVQLGKTEDGFDINQYFVDHPEMVLGELTTESTQ 736

Query: 447 DQRRQILDIYVSREN--GKFSRMLDYRTFGYRRIKVLRP 483
             R ++    +   +   + +  + +    Y  ++V  P
Sbjct: 737 YGREELTVAPIEGTSLADQLAEAVQHIEGQYTEVEVETP 775


>gi|295090193|emb|CBK76300.1| DNA methylase [Clostridium cf. saccharolyticum K10]
          Length = 2605

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 72/261 (27%), Gaps = 70/261 (26%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  +       T   V+               ++       + +P+CG G F    
Sbjct: 1047 EEYTAARASTLNAHYTSPTVIRAIY--------DAVEQMGFRTGNILEPSCGVGNFFGML 1098

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVC-----VAGMLIRRLESDPRRDLSKNIQQ 278
               +               +G EL+  +  +       A + +   E+  RRD       
Sbjct: 1099 PESM----------AGSRLYGVELDSISGRIARQLYPKADITVAGFETTDRRDF------ 1142

Query: 279  GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                         +   + N PFG+    DK      +K G                   
Sbjct: 1143 -------------YDLAIGNVPFGQYQVNDKAY----NKLGFNI---------------- 1169

Query: 339  LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +   K       GG  A V            + +S +RR+L +   +   + LP + F
Sbjct: 1170 HNYFFAKSLDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNNAF 1224

Query: 399  ---FRTNIATYLWILSNRKTE 416
                 T++ + +  L  R   
Sbjct: 1225 RANAGTDVVSDILFLQKRDRP 1245


>gi|195568199|ref|XP_002102105.1| GD19733 [Drosophila simulans]
 gi|194198032|gb|EDX11608.1| GD19733 [Drosophila simulans]
          Length = 488

 Score = 40.3 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 13/200 (6%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     +  +  L          ++DP  GTG  L
Sbjct: 180 HLIKELSLKHRKFIGNTSMDAQLSLLMANQAMVREGDL----------VFDPFVGTGSLL 229

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 230 VSAAKWGGYVLGADIDYMMVHARCRPSRITQKVREKDESIRANLKQYGCADRYMDVVVAD 289

Query: 281 TLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             S         F   +++PP+G +   +K   +   K           P  S  S+  L
Sbjct: 290 -FSNPVWHPRISFDCIITDPPYGIREATEKVEKKASVKANTRSESMVHYPSTSHYSLQSL 348

Query: 340 M-HLANKLELPPNGGGRAAI 358
              L          GGR   
Sbjct: 349 YGDLLEFSAKHLRLGGRLVC 368


>gi|15896139|ref|NP_349488.1| S-adenosylmethionine-dependent methyltransferase, HEMK ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|15025933|gb|AAK80828.1|AE007786_1 S-adenosylmethionine-dependent methyltransferase, HEMK ortholog
           [Clostridium acetobutylicum ATCC 824]
 gi|325510293|gb|ADZ21929.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
           acetobutylicum EA 2018]
          Length = 285

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 28/179 (15%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR    +    +L+  +          + + D   G+G        +  D          
Sbjct: 93  PRPDTEILVEAVLEYIELNN------YKKVCDVCTGSGAIGLSIAKYAKDV--------- 137

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
                 ++ P+   V       + L  + R      I+ G  L K +  G++F   +SNP
Sbjct: 138 -EVLCSDISPDAIRVSKIN--RQGLNLEDRV----KIENGDLLEKPIERGEKFDIVVSNP 190

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+ +     +D + K   + +       L    DG + F   + +  +     GG  A 
Sbjct: 191 PYIR-----EDEIPKLMDDVKDYEPIIALVGGEDG-LDFYRRITSMSKKVLKPGGLIAY 243


>gi|315122389|ref|YP_004062878.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495791|gb|ADR52390.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 967

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDN-AKAIFEDFDFSSTIARLEKAGLLYKICK 138
           +LS L  +N        I S   +  + +FE+ DFS+ ++  E+  +L K+ +
Sbjct: 168 TLSRLYCSNIGVEFMHIINSKERDWIRDVFENPDFSNKLSNDERKSILKKLVE 220


>gi|192289768|ref|YP_001990373.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Rhodopseudomonas palustris TIE-1]
 gi|192283517|gb|ACE99897.1| protein-(glutamine-N5) methyltransferase, ribosomal protein
           L3-specific [Rhodopseudomonas palustris TIE-1]
          Length = 340

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 18/122 (14%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR  +        D  D    ++P  I  + D   G+G     A              P 
Sbjct: 149 PRSYIGELLDSHFDGGDTSLIDAPEAIERVLDLCTGSGCLAILA----------AYAFPN 198

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
                 +L  +  AV    +   RL+          +  G     D    +R+   ++NP
Sbjct: 199 ATVDAVDLSKDALAVATRNVAEHRLDDRVS------LYHGDLF--DPLGDERYDLIITNP 250

Query: 300 PF 301
           P+
Sbjct: 251 PY 252


>gi|319891854|ref|YP_004148729.1| hypothetical protein SPSINT_0564 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161550|gb|ADV05093.1| hypothetical phage protein [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 225

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 159 YEHLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           ++     F  E +  +  +   TP+ +  L ++ +   D            T Y+P  GT
Sbjct: 51  FDWFHEYFQDEHADRKKKKQDFTPKSISKLLSSFVSSEDG-----------TYYEPAAGT 99

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPH-GQELEPETHAVCVAGMLIRRLES 266
           GG L    +      S  +  P    +  +EL   T    +  MLIR +  
Sbjct: 100 GGILIQKWDDDRMKHSPLEYMPSFYFYTAEELSDRTIPFLLFNMLIRGMNG 150


>gi|213962117|ref|ZP_03390381.1| type III restriction enzyme, res subunit family [Capnocytophaga
           sputigena Capno]
 gi|213955123|gb|EEB66441.1| type III restriction enzyme, res subunit family [Capnocytophaga
           sputigena Capno]
          Length = 2020

 Score = 40.0 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 65/462 (14%), Positives = 131/462 (28%), Gaps = 61/462 (13%)

Query: 121 SSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP 180
           +  I  L  +  L  +  + +        + D + + I E+       +     +++ T 
Sbjct: 541 NEEITTLVNS--LTFVADDNTIQLNEGIQITDEIKNTISEYKSGGITKDNRGVLDEYYTD 598

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
             +V+    L+ +        +      + +P+ GTG FL    N               
Sbjct: 599 EKLVNAVRNLIKNNFSGKQSIN------VLEPSVGTGNFLHATDNLGLKTNVSA------ 646

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300
                E+   T  +     L+    S   R           + KD     ++   + NPP
Sbjct: 647 ----FEINETTAKIAK---LLHPEASINLRSFETEFITDKGIKKDFSP--QYDLVIGNPP 697

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           +G         + +E K          LP+  D       +   +     N G   A+VL
Sbjct: 698 YG-NHRGLYLGLGEETK----------LPRYED-------YFVKRSLDVMNEGATLAMVL 739

Query: 361 SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
            S  L      SG      +            LP  +F  T++ T + IL      + + 
Sbjct: 740 PSGWLNRQDKLSGAELSEAY-----------RLPNGVFKATDVGTDIVILRKNSQAQTQN 788

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDD-----QRRQILDIYVSRENGKFSRMLDYRTFGY 475
                             +K R   ++          L         K  +    +T   
Sbjct: 789 ISNYFKEHPQQILGDTLQRKNRFGREEDYVKGNLDDALTRLQEFTTKKVIQPEQTQT--T 846

Query: 476 RRIKVLRPLRMSFILDKTGLARLEADITWRKL-SPLHQSFWLDILKPMMQQIYPYGWAES 534
           R +++           K  +A  E D+    + +  + +  ++  + + Q I  +   + 
Sbjct: 847 REVQLDMFSTFESAPAKEPIAEKEEDVVVTTVPNEEYNNLLVEAKEKVGQAINIFRNIKF 906

Query: 535 FVKESIKS-NEAKTLKVKASKSFIVAFINAFGRKDPRADPVT 575
                I   +    L  K  +               +AD + 
Sbjct: 907 KSLAVITEWDNYAALLRKLDRKNTKFTKEELSDISKKADSII 948


>gi|323448370|gb|EGB04269.1| hypothetical protein AURANDRAFT_32742 [Aureococcus anophagefferens]
          Length = 308

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 18/180 (10%)

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--VPHGQELEPETH 252
           +D   ++ P   R + D  CG G  L     +V D     K          G +   E+ 
Sbjct: 83  NDEPLEQQP---RAVADMGCGDGRLLLTLYEYVRDQTKRGKHLDKHPLTLIGVDFNDESL 139

Query: 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFGKKWEKDK 309
            V  A +    +  +        +Q G  +    F     ++  Y   +    + +    
Sbjct: 140 EVTKATLARAGVPFE--------VQWGD-IGDPAFVVEALEKKGYARDSVLHVRSFLDHD 190

Query: 310 DAVEKEHKNGELGR-FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNG 368
                  ++ +  R +  G+   +DG ++    +   L         A        L  G
Sbjct: 191 RPYVAPKRDADAFRMYTRGVYVRNDGDVIAPKTMLQSLVEHLERWSDAVGFHGLCVLEAG 250


>gi|170761535|ref|YP_001786653.1| restriction endonuclease family protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169408524|gb|ACA56935.1| restriction endonuclease family protein [Clostridium botulinum A3
           str. Loch Maree]
          Length = 747

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 49/158 (31%), Gaps = 19/158 (12%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARL--EKAGLLYK 135
             F N  +  L ++   N +     YI     +     +  DF      L       L K
Sbjct: 96  LVFDNADKKFLESIFKDNIK---YEYINPSYYS----LDKGDFLHYENDLFYRYNMFLNK 148

Query: 136 ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD 195
           I    +  +   ++     +  IYE +I    ++  +    F TP  ++      +    
Sbjct: 149 IIDEINTFDFIKNSG---EIGEIYEKII---STKYKKSMGIFYTPEYIIDYILENVFYE- 201

Query: 196 DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
              F         L D + G G F+  A + +    + 
Sbjct: 202 ---FSPLKNPFVKLIDISAGAGYFIIKAYDKLKKVFTE 236


>gi|320321569|gb|EFW77678.1| helicase domain-containing protein [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 1592

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 62/220 (28%), Gaps = 49/220 (22%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
               +++P  GTG F+      +                  EL+P T  +          
Sbjct: 7   PGGKIFEPAAGTGNFIGLMPEGIR---------KESQFTAVELDPLTAEIGK-----HLY 52

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
            +    +          L   +     F  C++NPPFG +   D    E    +      
Sbjct: 53  PTATYLNRG--------LQDVVVPSGYFDACVANPPFGSQSLYDPHHRELSGYSIHNY-- 102

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                        FL    +KL+     GG   +V+S   L    A +G    R  + E 
Sbjct: 103 -------------FLAKSLDKLKP----GGVMGVVVSRYFL---DAANG--RAREHIAEQ 140

Query: 385 DLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGK 421
                 + LP   F     T + T +         E   K
Sbjct: 141 SHFLGAIRLPNTAFKENALTEVTTDIVFFQKAIPGEETDK 180


>gi|302392965|ref|YP_003828785.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acetohalobium arabaticum DSM 5501]
 gi|302205042|gb|ADL13720.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Acetohalobium arabaticum DSM 5501]
          Length = 307

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 21/195 (10%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           + F S   +  ED + PR         ++   + L  +   +  T+ D   G+G  +   
Sbjct: 81  QEFMSLKFKVNEDVLIPRPETEHLVEAVIQRVNKLADKREKL--TVIDLCTGSGAIIISL 138

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              +AD              G ++  E  AV      + ++++  +         G  L+
Sbjct: 139 AKELADVPLEIN------YIGTDVSQEALAVAKDNAKLHQVQNQIQFL------VGDLLN 186

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
                  +    +SNPP+     K+   +E E +         G   I      F   + 
Sbjct: 187 PVKELNLKPDIIISNPPYIAD--KELQELEPELQYEPEIALKAGENGID-----FYRQII 239

Query: 344 NKLELPPNGGGRAAI 358
           ++ E     GG    
Sbjct: 240 SETEQLLTDGGIIGF 254


>gi|300774274|ref|ZP_07084140.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758867|gb|EFK55697.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 833

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 64/239 (26%), Gaps = 68/239 (28%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV-------- 154
           Y+         +FE     +T+          ++ + F       D              
Sbjct: 318 YLNG------GLFEPEKNKATLEVDFPTDYFKELLEFFDQYNFTIDENSPDDHEVGIDPE 371

Query: 155 -MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA------------------------ 189
            + +I+E+L+     E +     F TP+++V                             
Sbjct: 372 MLGHIFENLL-----EDNRDKGAFYTPKEIVQYMCKESLIQYLLNTFREEKDIEDFIRLH 426

Query: 190 ----LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH----------- 234
                L D ++A+          + DP  G+G F    +  + +                
Sbjct: 427 TVTPFLADKENAVLLNKKLDDIKVCDPAIGSGAFPIGMLQEIFEAKRFIYPYLKTNEAFN 486

Query: 235 -----KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSK 284
                K       +G +LE     +      +  +  +       N    I QG++L +
Sbjct: 487 PADVKKNIIQNSIYGVDLEKGAVDIAQLRFWLSLVVEELNPHPLPNLDYKIMQGNSLLE 545


>gi|242347983|ref|YP_002995544.1| hypothetical protein pRA1_0046 [Aeromonas hydrophila]
 gi|242348119|ref|YP_002995679.1| hypothetical protein pRAx_0023 [Escherichia coli]
 gi|224831708|gb|ACN66840.1| conserved hypothetical protein [Escherichia coli]
 gi|224831802|gb|ACN66933.1| conserved hypothetical protein [Aeromonas hydrophila]
          Length = 211

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G   F TP ++  L + ++                  Y+P CG+G    +A++ + + 
Sbjct: 89  KKGTNYFPTPPEIGRLMSLII----------GSQSSANFYEPCCGSG---INAIHWMENL 135

Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             +H  +       + ++++P     C    L    ES        +I    TLS
Sbjct: 136 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPNMLSIVGIDTLS 189


>gi|160942833|ref|ZP_02090073.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445885|gb|EDP22888.1| hypothetical protein FAEPRAM212_00310 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1925

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 70/261 (26%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +  +       T   V+               +        + +P+ G G F    
Sbjct: 381 EEYAAARASTLNAHYTSPIVIRAIY--------DAVERMGFQSGNILEPSMGVGNFFGML 432

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKNIQQ 278
            + +AD             +G EL+  T  +       A + +   E+  RRD       
Sbjct: 433 PDSMAD----------SRLYGVELDSITGRIAQKLYPQADITVAGFETTDRRDF------ 476

Query: 279 GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338
                        +   + N PFG+    DK      +K G            S  +  F
Sbjct: 477 -------------YDLAIGNVPFGQYKVNDKAY----NKLGF-----------SIHNYFF 508

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF 398
              +          GG  A V S   +      S +S  R+++ E   +   + LP D F
Sbjct: 509 AKTI-----DQIRPGGVIAFVTSHFTM-----DSKDSSARKYMAERANLLGAIRLPNDAF 558

Query: 399 ---FRTNIATYLWILSNRKTE 416
                T + + +  L  R   
Sbjct: 559 KANAGTEVVSDIIFLQKRDRP 579


>gi|329960658|ref|ZP_08299001.1| hypothetical protein HMPREF9446_00560 [Bacteroides fluxus YIT
           12057]
 gi|328532531|gb|EGF59325.1| hypothetical protein HMPREF9446_00560 [Bacteroides fluxus YIT
           12057]
          Length = 912

 Score = 40.0 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 74/266 (27%), Gaps = 38/266 (14%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESF-----VKVAGYSFYNTSE---YSLSTLGSTN 95
           L      T + V  +Y A                 KV     YN      + L +L S  
Sbjct: 252 LSAVFSSTINDVDREYKAIYALQTTYAIIVKLIACKVLDRLNYNAEADVYHDLLSLDSGK 311

Query: 96  TRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGLLYK-ICKNFSGIELHPDTVP 151
            R+  +     +S +    +   E   FS      +    LY  + K    I+ +     
Sbjct: 312 MRSFFQRMEDGYSYSNMGVRNFLEGDFFSWYADEAQWGDKLYDALLKLMVNIDYYSSFSL 371

Query: 152 D------RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
           +       V  ++Y  +I +    +     ++ TP  +        +             
Sbjct: 372 NVRYAPIDVFKDLYMSIIPQ---SIRHSMGEYFTPEWLADSVVEKAIGYVGNS------- 421

Query: 206 IRTLYDPTCGTGGFLTDAMNHV----------ADCGSHHKIPPILVPHGQELEPETHAVC 255
                DP CG+G F+   +  +                     I   +G ++ P +    
Sbjct: 422 RWKAIDPCCGSGIFIITLIKKLVGDISLGELTRKNKELLLEEIINRVYGIDINPLSVLSA 481

Query: 256 VAGMLIRRLESDPRRDLSKNIQQGST 281
                +   +    +D+   +  G +
Sbjct: 482 RISYYLAIHQLGDVKDVEIPVYLGDS 507


>gi|167856493|ref|ZP_02479208.1| hypothetical protein HPS_09365 [Haemophilus parasuis 29755]
 gi|167852388|gb|EDS23687.1| hypothetical protein HPS_09365 [Haemophilus parasuis 29755]
          Length = 436

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 79/293 (26%), Gaps = 66/293 (22%)

Query: 40  LLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN--TSEYSLSTLGSTNTR 97
           +L RL  + +     + ++         D  +  +    + Y   TS   +  L +    
Sbjct: 6   VLFRLSESDKGQNQDIEKRRKKLSEIFSDNINNNEKEYLALYVLQTSYAIIVKLIACKVI 65

Query: 98  NNLESYIASFSDNAK-----AIFEDFDFSSTIARLEK----------------------- 129
             L     SFS++ K     +I +       + +LE                        
Sbjct: 66  QTL-----SFSEDVKFFSDLSIIDSIKLQRFMEKLEDGYVFSSGGVRNLLEGDFYSWYSD 120

Query: 130 ----AGLLYKICKNF-------SGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM 178
                  +Y   KN        S      +     +  ++Y  ++     E+     ++ 
Sbjct: 121 KNQWNPKIYNSIKNIIKELEFYSSSNFSYEFQTIDIFKDLYMEIMPN---EIRHSLGEYF 177

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS----HH 234
           TP  +     +          ++         DP CG+G FL   +  + D         
Sbjct: 178 TPSWMADHVVS-------RSLEKLNKESWKAIDPCCGSGVFLISLIKSILDKHELYSLTI 230

Query: 235 KIPPI------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           K             +G +L P +         +        + +   +  G +
Sbjct: 231 KEKQELLLRILSSVYGIDLNPLSVLTARVSYFLAIRPLIDEQKIEIPVYLGDS 283


>gi|90418996|ref|ZP_01226907.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337076|gb|EAS50781.1| conserved hypothetical protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 1181

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 53/212 (25%), Gaps = 51/212 (24%)

Query: 100 LESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK--ICKNFSGIELHPDTVPDRVMSN 157
           L +   + S+    +FE          L    LL    + +               V+  
Sbjct: 155 LIAQCNALSETMGFMFEKI--GDATELLLPDNLLATDGLIRKLVQNSDTASWQDVEVIGW 212

Query: 158 IYEHLIRRFGSEVSEG---------------AEDFMTPRDVVHLATALLL---------- 192
           +Y+  I     +V +                A    TP  +V       L          
Sbjct: 213 LYQFYISEKKDDVFDKLKKKNIKITAANIPAATQLFTPHWIVRYLVENSLGRLWLLNNPS 272

Query: 193 --------------DPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
                         +P+    K        + DP CG+G  LT A + +           
Sbjct: 273 SRLAEKMDYYIAPEEPETDFLKIGSPEEIKVCDPACGSGHMLTYAFDLLYMIYEEAGYRA 332

Query: 239 IL--------VPHGQELEPETHAVCVAGMLIR 262
                        G E++    A+    + ++
Sbjct: 333 RDIPALIIEKNLQGIEIDDRAGALAAFSLTMK 364


>gi|317013330|gb|ADU83938.1| adenine specific DNA methyltransferase [Helicobacter pylori
            Lithuania75]
          Length = 2866

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 100/329 (30%), Gaps = 69/329 (20%)

Query: 165  RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
             F    S   + + TP     L    +    D L   +    + +++P+ GTG F+    
Sbjct: 987  EFRRAYSSTRDAYYTP----KLVIDSIYQALDQLGFNNDNHQKEIFEPSLGTGKFI---- 1038

Query: 225  NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
                   +H          G EL+P + ++               + L  N    +T  +
Sbjct: 1039 -------AHAPSDKNYRFMGTELDPISASIS--------------QFLYPNQVIQNTALE 1077

Query: 285  DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                 + +   + NPP+G       +  E  +++                   FL     
Sbjct: 1078 KHSFHQDYDAFVGNPPYGNHKIYSSNDKELSNESVHNY---------------FLGKAIK 1122

Query: 345  KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIA 404
            +L+      G  A V+  S  F         ++R  + +N      + LP  +F  T   
Sbjct: 1123 ELKDD----GIGAFVV--SSWFMDAKNP---KMREHIAKNATFLGAIRLPNSVFKGTGAE 1173

Query: 405  TYLWILSNRKTEERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILD 454
                I+  +K  ++        A   +  I N          +  +        + +I++
Sbjct: 1174 VTSDIVFFKKGVDKATNQSFTKAMPYYDKIINGLDDDTLFALQNNRFDSFTPSDQLKIVN 1233

Query: 455  I----YVSRENGKFSRM--LDYRTFGYRR 477
                 +  ++         +D   FGY+ 
Sbjct: 1234 AIASHFGLKQEKLQRWYEKIDTANFGYKE 1262


>gi|169824650|ref|YP_001692261.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
 gi|167831455|dbj|BAG08371.1| putative DNA methyltransfarase [Finegoldia magna ATCC 29328]
          Length = 2547

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 71/256 (27%), Gaps = 59/256 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TPR+V        +D       +       + +P+ G G F+    + +         
Sbjct: 840  FYTPREV--------MDGIYKTITDMGFKTGNILEPSAGVGNFIGSMPSEIQSSK----- 886

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G E +  +  +                    NI Q     +  F+   F   +
Sbjct: 887  -----VYGVEKDSLSGRIAR------------ELYPEANI-QIKGFEETNFSNNFFDLVI 928

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG     D++         +                        K       GG  
Sbjct: 929  GNVPFGDFKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGII 968

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +R+++         + LP  +F     T + + +  L  R
Sbjct: 969  AFIT-----SSGTMDKKDESVRKYINARCEFLGAMRLPNTIFKGLAGTEVTSDIIFLKKR 1023

Query: 414  KTEERRGKVQLINATD 429
             +   R    +  ATD
Sbjct: 1024 DSVIERDDDWIHLATD 1039


>gi|323143062|ref|ZP_08077766.1| type I restriction modification DNA specificity domain protein
           [Succinatimonas hippei YIT 12066]
 gi|322417163|gb|EFY07793.1| type I restriction modification DNA specificity domain protein
           [Succinatimonas hippei YIT 12066]
          Length = 575

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR 413
           GR A+V+     +   +     + RR ++E+  ++A + LP      + + T + +   +
Sbjct: 251 GRFAVVVP--VNYGTASMHSFLQNRRTIVESGRLKATILLPGGFLVGSLVNTLILLFDKK 308

Query: 414 KTEERRGKVQLINAT-DLWTSIRNEGKKRRIINDDQRRQILDIYVS 458
               +  ++ LI+ T D+       G++R  +N+  + Q++ +   
Sbjct: 309 NANHQ--QISLIDLTKDVCLDKAKSGRQRIALNEYAKNQVIAVLQD 352


>gi|315606198|ref|ZP_07881225.1| type II restriction enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312086|gb|EFU60176.1| type II restriction enzyme [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 918

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 62/422 (14%), Positives = 120/422 (28%), Gaps = 84/422 (19%)

Query: 88  LSTLGSTNTRNNLESYIASFSDNAKAIF--EDFDFSSTIARLEKAGLLYKICKNFSGIEL 145
              L +  + +   +Y+A F      +F  +   F  T  +  +A LL      +  I  
Sbjct: 228 FKALDTERSEDK-PAYLAGFPYVNGRLFSTDHSLFVPTFTKAARAMLLGLGTLIWQEINP 286

Query: 146 HPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD---------- 195
                   +  ++++ ++               T    +      L   D          
Sbjct: 287 -------DIFGSMFQAIV---TPGKRSDLGQHYTSVPNILKTIEPLFLDDLRKEFDTAWD 336

Query: 196 -----DALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH---------------- 234
                + L      +   ++DP CG+G FL  A   +                       
Sbjct: 337 SAKKLEDLLDRISEI--RIFDPACGSGNFLVIAYKELRRLEHAILERLADLDPSHNTLFT 394

Query: 235 -KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-------------IQQGS 280
             +  I   +G E++     V +  + I + + +                     I  G+
Sbjct: 395 DSVISIEHFYGIEIDDFAVEVAILSLWIAKHQMNREFKDKFGTTIPLIPLKEAGAIHAGN 454

Query: 281 TLSKD-----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
               D        G    Y + NPP+G   +K K A ++++      R     P   +  
Sbjct: 455 ATRIDWNTICKNDGSTEIYLIGNPPYGG-AKKLKAAQKQDYDYAFGDR-----PYSKNLD 508

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
            + L               + A V ++S      AG     I    LE            
Sbjct: 509 YIAL-WFIKGAAYIRRTQAQLAFVSTNSVTQGEHAGLMFPMILEMGLEIGYAYTSFKWEN 567

Query: 396 DLFFRTNIATYLW----ILSNRK---TEERRGKV-----QLINATDLWTSIRNEGKKRRI 443
           +      +   +     I + +K   +E  R +V      LI+A D++   R +    R 
Sbjct: 568 NAKRNAGVTVVVVSLRNITNKQKYLYSEHIRTQVTNINGYLIDADDIYIRTRKQDPLTRY 627

Query: 444 IN 445
           + 
Sbjct: 628 LP 629


>gi|77404497|ref|YP_345073.1| hypothetical protein pREC1_0012 [Rhodococcus erythropolis PR4]
 gi|77019878|dbj|BAE46253.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
          Length = 2936

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 61/253 (24%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            R F            T   +V      +        +        + +P CG G F+  A
Sbjct: 1050 RGFAQARETTLNAHYTDPSIVAELWRSV-------ERAGLPENALILEPGCGAGHFVGTA 1102

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                         P  +   G E+EP +  +              +   S+ I+      
Sbjct: 1103 -------------PAGVNMVGVEIEPISAQIA------------HQLYPSQQIRN-HGFE 1136

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +     + F   + N PFGK    D                       +DG  L    + 
Sbjct: 1137 RAFAPDETFSGAIGNVPFGKHGVPDPIHN-------------------ADGHSLHNQFIL 1177

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
              L      GG  A+V   +  +   A     ++R+ +  +  +   V LPT  F    +
Sbjct: 1178 KSLA-LTAPGGYVAVV---TSAYTSDARRP--DVRKKITADADLVGAVRLPTGAFDRQAK 1231

Query: 401  TNIATYLWILSNR 413
            T + T + I   R
Sbjct: 1232 TAVVTDVLIFRRR 1244


>gi|294643316|ref|ZP_06721141.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
 gi|292641338|gb|EFF59531.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
          Length = 650

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%)

Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            GLL  + + NF+  E  P+     V   ++  I+E+L+     E ++    F TP+++V
Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406

Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217
                                      +   D +   E    I        + DP  G+G
Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466

Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            F    +            N V +  +  +       +G ++E     +      +  + 
Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526

Query: 266 SDPRRDLSKN----IQQGSTLSK 284
            +   +   N    I QG++L +
Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549


>gi|218133895|ref|ZP_03462699.1| hypothetical protein BACPEC_01784 [Bacteroides pectinophilus ATCC
            43243]
 gi|217991270|gb|EEC57276.1| hypothetical protein BACPEC_01784 [Bacteroides pectinophilus ATCC
            43243]
          Length = 1444

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 82/316 (25%), Gaps = 64/316 (20%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSN-IYEH 161
              F  N  AI   E  +  +  A  E+  +L +        +   ++  +        + 
Sbjct: 1162 EKFQRNVAAIKLLEQIEGENRYATPEEQQILSQYVGWGGLADAFDESKSNWSAEYHQLKE 1221

Query: 162  LIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            L+    +            T   ++               ++       + +P+ G G F
Sbjct: 1222 LLSPEEYRMARESTLNAHYTSPVIIRQMYE--------TLEKMGFSKGNVLEPSMGIGNF 1273

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
                 + + +             +G EL+  T  +                     I+  
Sbjct: 1274 FGMMPDSMIE----------SRLYGVELDSITGRIAK----------QLYPQADVQIKG- 1312

Query: 280  STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
                K  +    F   + N PFG+    DK   +      +                   
Sbjct: 1313 --FEKTDYPNDFFDVAIGNVPFGQYKVADKQYDKNNFLIHDY------------------ 1352

Query: 340  MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF- 398
                 K       GG  A + S   +          E+RR+L +   +   V LP   F 
Sbjct: 1353 --FFAKTLDKVRPGGVVAFITSKGTM-----DKASPEVRRYLAQRADLLGAVRLPNTAFK 1405

Query: 399  --FRTNIATYLWILSN 412
                T + + +   S 
Sbjct: 1406 ANAGTEVTSDILFFSR 1421


>gi|307243528|ref|ZP_07525676.1| THUMP domain protein [Peptostreptococcus stomatis DSM 17678]
 gi|306493084|gb|EFM65089.1| THUMP domain protein [Peptostreptococcus stomatis DSM 17678]
          Length = 382

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 36/148 (24%)

Query: 204 GMIRTLYDPTCGTGGFLTDAM------------NHVADCGSHHKIPPIL----------- 240
              RTL DP CG+G  L +A               +++                      
Sbjct: 192 RPGRTLVDPMCGSGTILIEAAMIGINMAPGMNREFISEKWRTIDKKIWWEVRKEAFDLLK 251

Query: 241 -----VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +++PE+  +      I  +E   R +     +  S         + + + 
Sbjct: 252 DDESFTIYGYDIDPESIEIAKNNAEIAGVEKYIRFECRDATKFAS--------NEEYGFI 303

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           ++NPP+G++ E  +       + G   R
Sbjct: 304 ITNPPYGERLEDQESVKLLYKELGYAFR 331


>gi|307244421|ref|ZP_07526532.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
 gi|306492240|gb|EFM64282.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Peptostreptococcus stomatis
            DSM 17678]
          Length = 2967

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 110/387 (28%), Gaps = 72/387 (18%)

Query: 43   RLECALEPTRSAVREKYLAFGGSNIDLESFV-KVAGYSFYNTSEYSLSTLGS-TNTRNNL 100
            RLE  LE     +  K       +ID ++   K   ++F  T E     L        NL
Sbjct: 1106 RLESDLERIFENLTYKKSKDIIQDIDEKAEKPKTEVHNFKITEEILPEKLTPSERLNQNL 1165

Query: 101  ESY--IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
            E+   +       + +         +A+    G L ++       +             +
Sbjct: 1166 EAISMLNRVESGQRELDSTAQ--EVLAKYIGWGGLSEVFDESKEGQWKEARA------FL 1217

Query: 159  YEHLIR-RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
             E+L +  + S        F TP+ V+    +                   + +P+ G G
Sbjct: 1218 KENLSQDEYDSAKESTLTSFYTPKTVIDSIYS--------TLSGMGFKSGNILEPSMGIG 1269

Query: 218  GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                   N + +             +G EL+  +  +                +    I+
Sbjct: 1270 -------NFIGNIPDEMNKSK---FYGVELDSVSGRIGKL----------LYPESDIQIK 1309

Query: 278  QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
                L +  F+   F   + N PFG+    D++  +      +                 
Sbjct: 1310 G---LEETSFSNNFFDAVIGNVPFGEYKVNDREYNKNNFLIHDY---------------- 1350

Query: 338  FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
                   K       GG  A +       +G     +  +RR+L         + LP D 
Sbjct: 1351 ----FFAKSIDKVRNGGIIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDT 1401

Query: 398  F---FRTNIATYLWILSNRKTEERRGK 421
            F     T + + +  L  R +   R +
Sbjct: 1402 FKGVAGTEVTSDIIFLKKRDSIRERDE 1428


>gi|290969266|ref|ZP_06560791.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290780772|gb|EFD93375.1| SNF2 family protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 2905

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 51/397 (12%), Positives = 112/397 (28%), Gaps = 69/397 (17%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G       N + +       
Sbjct: 1175 FFTPKTVI--------DGVYKTLSDMGFKQGNILEPSMGIG-------NFIGNIPDEMNK 1219

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 1220 SK---FYGVELDSVSGRIGKL----------LYPESDIQIKG---LEETSFSNNFFDAII 1263

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1264 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1303

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1304 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1358

Query: 414  KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTF 473
             +   R +  +  A D    + N  K      +     + +I     N       +    
Sbjct: 1359 DSIRERDEDWIHLAEDENGLLYN--KYFVDHPEQVLGSMEEISGRFGNTIACLPKENTDL 1416

Query: 474  GYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAE 533
              + +       ++   +   +  L+ +I+    +   ++F   I+           + E
Sbjct: 1417 --KELLTKASEEIAKNANYEEIELLDDEISTIPATDDVKNFSYTIID------DEVYYRE 1468

Query: 534  SFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            + +    +  +    K+K       A  +   ++   
Sbjct: 1469 NSLFVKKEVTDKNKEKIKDYLELNAALKDVISKQKED 1505


>gi|295399528|ref|ZP_06809510.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109916|ref|YP_003988232.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
 gi|294978994|gb|EFG54590.1| N-6 DNA methylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215017|gb|ADP73621.1| N-6 DNA methylase [Geobacillus sp. Y4.1MC1]
          Length = 329

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 97/322 (30%), Gaps = 39/322 (12%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
             +L       +   L       ++     E + + F   V +G +++  P   +     
Sbjct: 41  GDVLQNEVSEINAQRLKKQYNDIQLERFTNEEIRKAFQLAVLKGMKEYTQPHHQMTPDAV 100

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
            L             +  T+ DP  GT   LT  +NH+    +          +G +++ 
Sbjct: 101 SLFISYLVNQFTRKHLALTILDPAVGTANLLTTVLNHLKGKQTKS--------YGVDVDD 152

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
               +      +++                    + LF           P      +++ 
Sbjct: 153 VLIKLAYVNANLQKHAIQLFNQDG---------LQPLFVELADVVICDLPVGYYPHKENA 203

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
                + + G            S    LF+       +     GG    ++ +  LF+  
Sbjct: 204 SRFVLKAEEGH-----------SYAHHLFIEQSLYYTKE----GGYLFFLIPN-TLFSSD 247

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNR-KTEERRGKVQLINAT 428
                +++  ++ E+ +I+ ++ LP  +F     A  ++IL  + K  +   K  L    
Sbjct: 248 QA---AKLHDFIKEHAVIQGLLQLPLSMFKTERAAKSIFILQKKGKNVKAPKKALLAELP 304

Query: 429 DL--WTSIRNEGKKRRIINDDQ 448
                  ++   +K      ++
Sbjct: 305 RFSNKQMMQAMMRKIDEWITEE 326


>gi|119508907|ref|ZP_01628059.1| hypothetical protein N9414_21045 [Nodularia spumigena CCY9414]
 gi|119466436|gb|EAW47321.1| hypothetical protein N9414_21045 [Nodularia spumigena CCY9414]
          Length = 1622

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 4/134 (2%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            + R      + +  + TP+ +        L            +  T+ +P  G+  FL 
Sbjct: 559 FLFRLAGRDRQKSASYYTPQSLTECLVKYALKELLTDKTADDILNLTICEPAMGSAAFLN 618

Query: 222 DAMNHVADCG---SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI-Q 277
           +A++ +A         ++   +      LE +   + +A   +  ++ +P       +  
Sbjct: 619 EAIDQLAAAYLERKQAELNQRIPHDDISLEMQKVKMLLADRNVFGIDKNPVAMELAEVSL 678

Query: 278 QGSTLSKDLFTGKR 291
             + +  D    ++
Sbjct: 679 WLNCIYGDPKAPEK 692


>gi|169829575|ref|YP_001699733.1| hypothetical protein Bsph_4142 [Lysinibacillus sphaericus C3-41]
 gi|168994063|gb|ACA41603.1| Hypothetical ytxK protein [Lysinibacillus sphaericus C3-41]
          Length = 309

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+    N  +            L+ S LF+        ++ +++ ++  I+AI+ LP  
Sbjct: 203 LFMEQSMNYTKEGGYL-----FFLAPSHLFDSEQS---KQLHKYIQKHAWIQAIIQLPDS 254

Query: 397 LFFRTNIATYLWILSNR-KTEERRGKVQLINATDL 430
           +F   ++   + IL  + K  +   +V L    ++
Sbjct: 255 MFANKSLEKSIVILQKQSKECQSPKEVLLAKVPNM 289


>gi|37522309|ref|NP_925686.1| hypothetical protein gll2740 [Gloeobacter violaceus PCC 7421]
 gi|35213309|dbj|BAC90681.1| gll2740 [Gloeobacter violaceus PCC 7421]
          Length = 1442

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 6/69 (8%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR------TLYDPTCGTGGFLTDAMN 225
           + +  + TP   V       L P  A                 + DP  G+G FL +A  
Sbjct: 503 KASGSYYTPHSFVRFLVQETLGPQVAERSPQSDPKPLEILKLKVCDPAMGSGHFLVEACR 562

Query: 226 HVADCGSHH 234
            + +     
Sbjct: 563 FLGEKLYEA 571


>gi|332664747|ref|YP_004447535.1| hypothetical protein Halhy_2794 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333561|gb|AEE50662.1| hypothetical protein Halhy_2794 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 1556

 Score = 40.0 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 30/153 (19%)

Query: 168 SEVSEGAEDFMTPRDVVH---------LATALLLDPDDALFKESPGMIR----TLYDPTC 214
            E     +   TP ++V          L   +LL        +   +       + D  C
Sbjct: 457 QEGGREFQSHYTPEELVQPLIKHSLEYLIEDILLLYKQQKSNKESTIKALLKLKVCDVAC 516

Query: 215 GTGGFLTDAMNHV----------------ADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
           G+G  L  A   +                       K       +G +  P    +C   
Sbjct: 517 GSGHILLSAARRIALAVAGVQTDEDQPNPLSIRKAMKEVVRNCIYGVDKNPLAVELCKIA 576

Query: 259 MLIRRLES-DPRRDLSKNIQQGSTLSKDLFTGK 290
           + +      +P   L  +I+ G  +       +
Sbjct: 577 LWLEAYNPGEPLNFLDHHIKCGDAIVGLAHRSE 609


>gi|308270548|emb|CBX27160.1| hypothetical protein N47_A11890 [uncultured Desulfobacterium sp.]
          Length = 1013

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 39/178 (21%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGY--SFYNTSEYSLSTLGSTNTRNNL 100
           RL+      R A     + +     + E F+ +      F N   +      +       
Sbjct: 98  RLKDNYGQHRDA--NYLMRYKDQFKNPEKFLNLINEIVPFLNGGLFECLDNKTDKI---- 151

Query: 101 ESYIASFSDNA----KAIFEDFDFSSTIARLEKAGL---------------LYKICK--N 139
             YI  FSDN     + I  DF F      ++ +G+               L  I +   
Sbjct: 152 --YIDGFSDNLAKPHQLIVPDFLFFGFDREVDLSGVVGINTNAFKNANVKGLIPILESYK 209

Query: 140 FSGIELHPDTVP----DRVMSNIYEHLIRRFGSEVS----EGAEDFMTPRDVVHLATA 189
           F+  E  P          ++  ++E+L+  +  E      +    F TPR++V+    
Sbjct: 210 FTIAENTPIEEDVALDPELLGKVFENLLASYNPETKTTARKQTGSFYTPREIVNYMVD 267


>gi|315586445|gb|ADU40826.1| adenine specific DNA methyltransferase [Helicobacter pylori 35A]
          Length = 545

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 43/235 (18%)

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDRV----MSNIYEHLIRRFGSEVSEGAEDFM 178
            +L K     L  +  +   I  +   + +      + + YE       +        + 
Sbjct: 58  NKLNKYANKSLKGVHNHQELILKYLKILENSSDLERLGSYYEE---ELSNTTRNLEGIYY 114

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V     L   P D    ++        DP  G+G F+  A+              
Sbjct: 115 TPNKIVE---QLFTLPKDFDTSQA-----IFCDPAVGSGNFIMHALKL---------GFK 157

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +   +G + +    A+       +R++     D   NI Q         T  +F    +N
Sbjct: 158 VENIYGYDTDAFAIALTK-----KRIKERYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTN 209

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+GKK+ +++    +  K          L +  D + LF +   N L+   + G
Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFIVSLNCLKENAHLG 255


>gi|213026940|ref|ZP_03341387.1| hypothetical protein Salmonelentericaenterica_32695 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 203

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 53/172 (30%), Gaps = 27/172 (15%)

Query: 119 DFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176
            F +      ++ A L+    +     ++      D        +L  +      E    
Sbjct: 41  KFYNQFDTEIIDTANLISLEIQKQPLTDVFNRIFEDC-------YLTGK----KGEWLGQ 89

Query: 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
           F+TP  +    +  +    D        +   + D   GTG  L   +  +     +  +
Sbjct: 90  FLTPNRLAEAISRFVGWEKD--------IKYNIGDCCAGTGSLLFPLLREIHSKEGYEGV 141

Query: 237 PPILVPHGQELEPETHAVCVA----GMLIRRLESDPRRDLSKN-IQQGSTLS 283
             I + +  E++P    + +A     M    L+         N I +  T+S
Sbjct: 142 QKIELLY-NEIDPLMAQLFMAQILTNMTYHNLDFKSLHVYIGNAITEYDTVS 192


>gi|166033468|ref|ZP_02236297.1| hypothetical protein DORFOR_03194 [Dorea formicigenerans ATCC 27755]
 gi|166026653|gb|EDR45410.1| hypothetical protein DORFOR_03194 [Dorea formicigenerans ATCC 27755]
          Length = 2640

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 64/260 (24%), Gaps = 58/260 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  S       T   V+      +                 + +P+ G G F    
Sbjct: 1386 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1437

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+P +  +              +     +I  G    
Sbjct: 1438 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1473

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG+    DK   +                              
Sbjct: 1474 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFSIHNY--------------------FF 1513

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
             K       GG  A V            + +S +RR+L +   +   + LP D F     
Sbjct: 1514 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1568

Query: 403  IATYLWILSNRKTEERRGKV 422
                  I+  +K +     V
Sbjct: 1569 AEVVSDIIFLQKRDRPLDIV 1588


>gi|331004614|ref|ZP_08328079.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330410483|gb|EGG89913.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2541

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 109/384 (28%), Gaps = 70/384 (18%)

Query: 44   LECALEPTRSAVREKYLAFGG-SNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
            L+  +  T     EK +       ++ ES  +        T       +   N     E 
Sbjct: 1549 LDFEILSTEEKSPEKSVDKEDLPVLNKESLSETLKQEDVYTGREHTKNIIPANYSITRED 1608

Query: 103  YIASFSDNAKAIFEDFDFSSTIARLEKA------GLLYKICKNFSGIELHPDTVP---DR 153
             + + S+  K   E       + +  +        +L K        ++  +        
Sbjct: 1609 EVLAPSERLKNNIEAIKVLKRLNKENRNASKEEQDILSKYVGWGGLSDVFDEERGGQWQE 1668

Query: 154  VMSNIYEHL-IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                + E+L +  + +        F TP+ V+                +       + +P
Sbjct: 1669 ARGFLKENLSLSEYEAAKESTLTAFYTPKVVIDAIYH--------TLSDMGFESGNILEP 1720

Query: 213  TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
            + GTG F+ +                    +G EL+  +  +              +   
Sbjct: 1721 SMGTGRFIGNL----------PGSMQNSKFYGIELDSISGQIAK------------KLYP 1758

Query: 273  SKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
              NIQ      +  F+   F   + N PFG     D    ++E++               
Sbjct: 1759 HSNIQV-KGFEETAFSNNLFDIAIGNVPFG-----DYRVSDREYEKN------------- 1799

Query: 333  DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392
              + L   +   K        G  A + SS  +          +IRR++ E       + 
Sbjct: 1800 --NFLIHDYFFAKTLDKVRSKGIIAFITSSGTMDKRN-----EDIRRYISERAEFLGAIR 1852

Query: 393  LPTDLF---FRTNIATYLWILSNR 413
            LP + F     T + + +  L  R
Sbjct: 1853 LPNNTFKGEAGTEVTSDIIFLKKR 1876


>gi|197294412|ref|YP_001798953.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
 gi|171853739|emb|CAM11662.1| Putative N6 adenine-specific DNA methyltransferase fragment
           [Candidatus Phytoplasma australiense]
          Length = 212

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 73/258 (28%), Gaps = 66/258 (25%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + + R     +E      TP  V      +L                 + DP  G G  
Sbjct: 1   MYRVDRNNFFKNEKKATIYTPSWVSQFLYNILSPQIQRGL---------ILDPCVGEGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                P                          L  D  +    N+   
Sbjct: 52  LL---------------PWQQKGFD------------------VLRVDIEKTTFPNLIHN 78

Query: 280 S--TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
           +   L++     ++    ++NPPF   ++      +   K    GR  P LP+      L
Sbjct: 79  NFLELTQKDLNTQKISLVITNPPFNLDFK-----TKNYVKEKYGGR--PLLPE------L 125

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPT 395
           +L  +               IVL +   F     S  S+  +  L  +   I +I++LP 
Sbjct: 126 WLSKIIELFGKD------IPIVLFTPYGFRLN-QSLNSKRLQKFLNQEYPEISSIISLPK 178

Query: 396 DLFFRTNIATYLWILSNR 413
           D+F      + + I +  
Sbjct: 179 DVFENVVFHSEILIFNVN 196


>gi|325853075|ref|ZP_08171224.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A]
 gi|325484449|gb|EGC87370.1| Eco57I restriction endonuclease [Prevotella denticola CRIS 18C-A]
          Length = 1127

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 53/178 (29%), Gaps = 41/178 (23%)

Query: 139 NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSEVSEG----AEDFMTPRDVVHLATA- 189
           NF+  E  P+         ++  ++E+L+  +  E  E     +  F TPR++V+     
Sbjct: 388 NFTIEENSPEEQQVALDPELLGKVFENLLGAYNPETKETARNQSGSFYTPREIVNYMVDE 447

Query: 190 --LLLDPDDALFKE--------------------SPGMIRTLYDPTCGTG----GFLTDA 223
             +    +D   +                            + DP CG+G    G L   
Sbjct: 448 SLMAYLGNDETVRSVFSRDFIYDKSKADEYKSIVERLKNVKVLDPACGSGAFPMGLLNKM 507

Query: 224 MNHVADCGSHHKIPP------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +  +        I            +G +++     +      I  +    + +   N
Sbjct: 508 VEVIERISPEEDIYSLKLSIIEKCLYGSDIQSIAAQITKLRFFISLICDCVKDETKPN 565


>gi|76802572|ref|YP_327580.1| restriction/modification enzyme [Natronomonas pharaonis DSM 2160]
 gi|76558437|emb|CAI50028.1| probable restriction/modification enzyme [Natronomonas pharaonis
           DSM 2160]
          Length = 1342

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 26/137 (18%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIR--------TLYDPTCGTGGFLTD 222
           +    + T   +V       L P  +   +++             T+ DP  G+G FL  
Sbjct: 491 KETGSYYTDPGLVQELVQSSLKPVVEDRLEDATTTDEQEDALLDITVCDPASGSGAFLIA 550

Query: 223 AMNHVADCGSHHKIPPI----------------LVPHGQELEPETHAVCVAGMLIRR-LE 265
           A N +A   +  +                       +  +L P    +    + I   +E
Sbjct: 551 ANNFLAQRLARIRSDSNYPPEDQIRRARRDVLQHCIYAVDLNPMAVELAKVSLWINSAVE 610

Query: 266 SDPRRDLSKNIQQGSTL 282
             P   L  +I+ G++L
Sbjct: 611 DKPLNFLDHHIKCGNSL 627


>gi|322418818|ref|YP_004198041.1| hypothetical protein GM18_1296 [Geobacter sp. M18]
 gi|320125205|gb|ADW12765.1| hypothetical protein GM18_1296 [Geobacter sp. M18]
          Length = 574

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 32/206 (15%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
            +  +E      T  +VV     L+    D      P     L +P+CG G FL   +  
Sbjct: 28  AATGAESRGAIYTRSEVVDFILDLVGYTAD-----KPLQQYRLLEPSCGEGDFLRPVLRR 82

Query: 227 VA-----------DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           +                  +    +  H         AV VA ++   +      DL+  
Sbjct: 83  LLASWRRFGTSTDAIADLGEAIRAVELHRDTFHATRPAV-VAQLIEEGVAPSTAEDLADR 141

Query: 276 -IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE---LGRFGPGLPKI 331
            + +G  L   L    +F + + NPP+  + E     +  E++N       R    +P  
Sbjct: 142 WLTRGDFLLSPL--DGQFDFVVGNPPY-VRQELIPAPLLAEYRNRFETMYDRADLYVP-- 196

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAA 357
                 F+    + L    + G   A
Sbjct: 197 ------FIERSLSFLAPGGSLGFICA 216


>gi|227892053|ref|ZP_04009858.1| conserved hypothetical protein [Lactobacillus salivarius ATCC
           11741]
 gi|227866163|gb|EEJ73584.1| conserved hypothetical protein [Lactobacillus salivarius ATCC
           11741]
          Length = 1084

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 65/211 (30%), Gaps = 23/211 (10%)

Query: 87  SLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELH 146
            L      N +         ++ NA  I    +       L+ +     I ++   I + 
Sbjct: 302 DLLEQSPNNIKKLFSQVEDGYTFNASNIINLIEGDFFSWYLDDSIWSESIAQSIKSILVK 361

Query: 147 PDTVPDRVMSNIYEHL-------IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
            ++  D  +S  +E L       +      V +   +  TP  +        L+  D   
Sbjct: 362 INSYSDASLSYQFETLDLFKELYMNVMPQPVRKAFGEVFTPDWLADNVVTTCLEMIDNEQ 421

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADC-------GSHHKIPPILVPHGQELEPETH 252
                   T  DPT G+G F+  A+  + +          +     +   HG +L P + 
Sbjct: 422 -------WTFLDPTSGSGTFVFKAIEKIVERLLLDGRSNKYILEQILSRVHGIDLSPLSV 474

Query: 253 AVCVAG--MLIRRLESDPRRDLSKNIQQGST 281
                   + IR    D   ++   I  G +
Sbjct: 475 LTARVSFLLAIRPFIDDNNMEIEIPIYLGDS 505


>gi|21673985|ref|NP_662050.1| type III restriction system methylase [Chlorobium tepidum TLS]
 gi|21647130|gb|AAM72392.1| type III restriction system methylase [Chlorobium tepidum TLS]
          Length = 214

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 29/132 (21%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VA 228
              +  TP  +V     L+ D        +  +     +P CG+G FL   +      V 
Sbjct: 12  DHGEVFTPAWLVEAMIDLVKDE-------TERIDARFLEPACGSGNFLVPILQRKLAAVE 64

Query: 229 DCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSK------- 274
                                +G EL  +  A C A ML    +     +  +       
Sbjct: 65  RKFGKSNFEKQHYALFAVMCTYGIELLADNIAECRANMLEIFADYLTLDESDELYRAAIY 124

Query: 275 ----NIQQGSTL 282
               N+  G  L
Sbjct: 125 VLSQNLVHGDAL 136


>gi|260940781|ref|XP_002615230.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720]
 gi|238850520|gb|EEQ39984.1| hypothetical protein CLUG_04112 [Clavispora lusitaniae ATCC 42720]
          Length = 248

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 52/177 (29%), Gaps = 36/177 (20%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
             + D  CG GG          + G            G ++             +  +++
Sbjct: 75  ENILDVCCGGGGNTIQFAKIFKNVG------------GVDVNANNIKCSQHNSTVYGVDA 122

Query: 267 DPRRDLSKNIQQGSTLSKD------LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGE 320
           +            + LS+D           +F +   +PP+G    K +   +       
Sbjct: 123 NTWFVQGD----WNKLSEDSSWIPVDLPNGKFDFIFCSPPWGGPNYKKQQWFDLFSMEPF 178

Query: 321 LGR------------FGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
             R            FG  LP+ SD  +  +  ++++L           +  + SPL
Sbjct: 179 NLRQLCHSLRKFSDHFGLFLPRNSD--LDQIRQVSHELFGDKYKTRVVCLWQNGSPL 233


>gi|149003812|ref|ZP_01828640.1| hypothetical protein CGSSp14BS69_03093 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147758146|gb|EDK65149.1| hypothetical protein CGSSp14BS69_03093 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 202

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 97  LLMEQGLKYLKSDGY-----AIFLAPSNLLTSPQS---DLLKEWLKEEASLVAMISLPEN 148

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 149 LFANAKQSKTIFILQKK 165


>gi|296444700|ref|ZP_06886663.1| hypothetical protein MettrDRAFT_0379 [Methylosinus trichosporium
           OB3b]
 gi|296257648|gb|EFH04712.1| hypothetical protein MettrDRAFT_0379 [Methylosinus trichosporium
           OB3b]
          Length = 230

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 3   EFTGSAASLANFIWKNAEDLW--GDFKHTDFGKVILPFTLLRRLE-CALEPTRS 53
                 A     +   A+ L      K +++ + +L    LR  + C  E  + 
Sbjct: 71  HMASDDAETERRLRSVADQLRANSGLKPSEYSRPVLDLLFLRYADGCFAEAEKQ 124


>gi|294810252|ref|ZP_06768915.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442525|gb|EFG11329.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 647

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 53/203 (26%)

Query: 130 AGLLYKICK-NFSGIELHPDT----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVV 184
            GLL  + + NF+  E  P+     V   ++  I+E+L+     E ++    F TP+++V
Sbjct: 352 NGLLTMLSQYNFTIDENDPNDAEVGVDPEMLGRIFENLL-----EDNKDKGAFYTPKEIV 406

Query: 185 HLAT---------------------ALLLDPDDALFKESPGMIR------TLYDPTCGTG 217
                                      +   D +   E    I        + DP  G+G
Sbjct: 407 QYMCRESLIAYLQTDMREEDKECIRQFVTTHDASQLGELKEYIDQKLYDVKICDPAIGSG 466

Query: 218 GFLTDAM------------NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
            F    +            N V +  +  +       +G ++E     +      +  + 
Sbjct: 467 AFPMGLLRELFFCRSAIEPNIVENAANIKRHIIQNNIYGVDIERGAVDIARLRFWLSLIV 526

Query: 266 SDPRRDLSKN----IQQGSTLSK 284
            +   +   N    I QG++L +
Sbjct: 527 DEKSPEALPNLDFKIMQGNSLLE 549


>gi|330825863|ref|YP_004389166.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
 gi|329311235|gb|AEB85650.1| DEAD-like helicase [Alicycliphilus denitrificans K601]
          Length = 1680

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 68/274 (24%), Gaps = 60/274 (21%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  +       T   ++      +        +        + +P  G G FL    
Sbjct: 172 DYASARASVNNSHYTEVHMIEAMWQAV--------ERFGFTGGRVLEPAAGVGHFLGAMP 223

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +A+                E++  +  +  A       +                  K
Sbjct: 224 RSLAE---------RSAVTAIEIDRLSGRMLQALYAPHGADVRIAP-----------FEK 263

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + N PFG     D              RF     +I +           
Sbjct: 264 VALPENWFDLVIGNVPFGNYPAADAGP-------KPYARF-----RIHNY------FFGR 305

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---T 401
            L+L   GG    I  + +      A      +R ++     +   + LP   F     T
Sbjct: 306 ALDLVRPGGLVCFITSTGTMEARDDA------VREYVASQAKLLGAIRLPRGAFAGLAST 359

Query: 402 NIATYLWILSNRKTEE-----RRGKVQLINATDL 430
           ++ T +  L  R   E        +V + +    
Sbjct: 360 DVQTDILFLGKRHPGEAVSGAWMERVLVPDGLRH 393


>gi|322378973|ref|ZP_08053383.1| hypothetical protein HSUHS1_0613 [Helicobacter suis HS1]
 gi|321148599|gb|EFX43089.1| hypothetical protein HSUHS1_0613 [Helicobacter suis HS1]
          Length = 1287

 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
            I+  P +        +Y     +  +   + +  F TP  +        L   +     
Sbjct: 451 NIKEKPKSTQHYTQGQLYL----KNSANSRKSSGSFYTPEKITKELVKQALVGLNDANIL 506

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
           +      + D  CG+G FL ++++ V+    + + P +     QE +     +  
Sbjct: 507 N----FKILDNACGSGAFLIESLHQVSQRALNGEFPSLKPLLEQEKQIVEEQIKK 557


>gi|260437990|ref|ZP_05791806.1| putative type I restriction enzyme methylase protein
          [Butyrivibrio crossotus DSM 2876]
 gi|292809617|gb|EFF68822.1| putative type I restriction enzyme methylase protein
          [Butyrivibrio crossotus DSM 2876]
          Length = 44

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 6  GSAASLANFIWKNAEDLWGDFKHTDF 31
           + A  A  IW  A+ L G FK  ++
Sbjct: 12 TNIAEKAQVIWNVADMLRGPFKPHEY 37


>gi|83311143|ref|YP_421407.1| Type II restriction enzyme [Magnetospirillum magneticum AMB-1]
 gi|82945984|dbj|BAE50848.1| Type II restriction enzyme [Magnetospirillum magneticum AMB-1]
          Length = 1198

 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN---TRNNLESYIASF 107
            +  V E  L            +     +  +   +    +         +NL    +  
Sbjct: 130 DKEKVIELKLDGTKEGDLYRMLLMAQCNALNSAMPFLFERIDDETELLLPDNLLHSDSVI 189

Query: 108 SDNAKAIFED----FDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
                 I E      +    + +   +    ++       E  P        + I ++++
Sbjct: 190 RQMVIEIEEADWQEIEIIGWLYQFYISEKKDQVIGKVVKSEDIPAATQLFTPNWIVKYMV 249

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF-----------KESPGMIRTLYDP 212
           +   +  ++    +  P+  +       ++P +              KE      T  DP
Sbjct: 250 Q--NTLGAKWLATY--PQSGIRAKMEFYIEPAEQTDGVNTKLAEITPKELNPEEITFLDP 305

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILV--------PHGQELEPETHAVCVAGMLIRRL 264
            CG+G  L +A +   D           V          G +++     +    +L++  
Sbjct: 306 ACGSGHILVEAYDLFKDIYLERGYVLRDVPRLILEKNLFGLDVDDRAAQMAAFALLMKAR 365

Query: 265 ESD 267
             D
Sbjct: 366 NDD 368


>gi|326437370|gb|EGD82940.1| hypothetical protein PTSG_03573 [Salpingoeca sp. ATCC 50818]
          Length = 1612

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 42/165 (25%)

Query: 204  GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
            G   T+ DP CG+   L +A+               +  HG +  P+          +  
Sbjct: 1398 GPGATVLDPFCGSATILLEAL---------AASGGSITCHGVDYSPKAIRGATQNAKMEG 1448

Query: 264  LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
            +    R           TL+K LF    F   ++NPP+G +  +  D V           
Sbjct: 1449 VLDKCRFHKGD----ARTLTK-LFEPASFDAIITNPPWGVRSGQSTDLV----------- 1492

Query: 324  FGPGLPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
                        +  +FL   A  ++     GGR  + L  + LF
Sbjct: 1493 -----------QLYTIFLQDAARIIKP----GGRMVVFLLKAMLF 1522


>gi|152974193|ref|YP_001373710.1| ABC-2 type transporter [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152022945|gb|ABS20715.1| ABC-2 type transporter [Bacillus cytotoxicus NVH 391-98]
          Length = 940

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 26  FKHTDFGKVILPFTL-LRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN-- 82
               +       F    ++    LE T   V E+Y          +S ++ A   F N  
Sbjct: 453 IDQAE-KDYNETFVADYKKAVSTLEQTSDKVNEEYNKVRQQYEQTKSILQKAKEDFENKG 511

Query: 83  TSEYSLSTLGSTNTRNNLESY----------IASFSDNAKAIFEDFDFSSTIARLEKAGL 132
            +    + +   +  +  ++           + S +     +  D +F++ IA+L+KA  
Sbjct: 512 INGLDSTKVALNSLNSQFQAASNMITDMIPVLESANKVFADVNSDKNFNNQIAKLKKAQS 571

Query: 133 LYK 135
           L +
Sbjct: 572 LLQ 574


>gi|282851933|ref|ZP_06261293.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
 gi|282556942|gb|EFB62544.1| conserved hypothetical protein [Lactobacillus gasseri 224-1]
          Length = 187

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI-RRWLLENDLIEAIVALP 394
           M FL H    +    +   +AAI++  S      AGSG+S I  + +L+N+ + A + +P
Sbjct: 1   MPFLAHGLRFMSNKEHA--KAAIIIQDS------AGSGKSRITNQEILKNNTLLASIKMP 52

Query: 395 TDLFF-RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453
            DLF     + T ++I       +    V+ I+        RN+G KR      +  +  
Sbjct: 53  YDLFVPNAIVNTSIYIFEVGVPHDFDRSVKFID-------FRNDGYKRTKRGIKEISKPA 105

Query: 454 DIYVS 458
             Y  
Sbjct: 106 HRYQD 110


>gi|331002100|ref|ZP_08325619.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330411194|gb|EGG90610.1| hypothetical protein HMPREF0491_00481 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2661

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 72/248 (29%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+    +           +       + +P+ G G F+ +  + +         
Sbjct: 941  FYTPKVVIDSIYS--------ALSDMGFKSGNILEPSMGIGNFVGNLSDEMKSSK----- 987

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 988  -----FYGVELDSVSGRIGKL----------LYPESDIQIKG---LEETSFSNNFFDVAI 1029

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1030 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1069

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1070 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1124

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1125 DSIRERDE 1132


>gi|57641093|ref|YP_183571.1| endonuclease-methyltransferase fusion protein [Thermococcus
           kodakarensis KOD1]
 gi|57159417|dbj|BAD85347.1| predicted endonuclease-methyltransferase fusion protein
           [Thermococcus kodakarensis KOD1]
          Length = 1125

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 37/227 (16%)

Query: 38  FTL--LRR-LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
                 RR        T   +++    +G    D E       +++Y      L  L  +
Sbjct: 196 MLFEDWRRIFSQVCSYTPEKLKKLAEFYGFKEADPERLTFAL-HTYYTL----LMKLIVS 250

Query: 95  NTRNNLESYIAS-----FSDNAKAIFEDFDFSSTIARLEKAGLLYKI-CKNFSGIE---L 145
              + L   +        +++  +  E F F   +  LE  GL  ++  +NF   +    
Sbjct: 251 EIVSVLSEGLTGSVLARLNESYLSDVESFRF--VLTELEDGGLFRQLGIRNFLEADYFAW 308

Query: 146 HPDTVPDRVMSNIYEHLIRRF-------------GSEVSEGAEDFMTPRDVVHLATALLL 192
           + +     V   +YE                     ++ +     + PR++ H       
Sbjct: 309 YLEEWSGEVARAVYEITKALMDYEPATVEQTPERVEDLFKRLYQNLVPREIRHSLGEYFT 368

Query: 193 DPDDALFKESP-----GMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
               A              + + DP CG+G FL  A+    + G  H
Sbjct: 369 PDWLAELTLDEAGYDGNPEKRVLDPACGSGTFLVLAIKRAKEWGLRH 415


>gi|270620566|ref|ZP_06221875.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
 gi|270317737|gb|EFA29129.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
          Length = 294

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400
               K +   +  G A IVL SS L NG       + R  LL++  + AI    +  F +
Sbjct: 18  FFIEKAKQLLHAKGIAVIVLPSSILTNGNI---YIKCREILLQHFDLVAIAEFGSGTFSK 74

Query: 401 TNIATYLWILSNR 413
           T   T    L  +
Sbjct: 75  TGTNTATLFLRRK 87


>gi|223985013|ref|ZP_03635111.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM
            12042]
 gi|223962985|gb|EEF67399.1| hypothetical protein HOLDEFILI_02415 [Holdemania filiformis DSM
            12042]
          Length = 2945

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 67/260 (25%), Gaps = 58/260 (22%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  S       T   V+      +                 + +P+ G G F    
Sbjct: 1388 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1439

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+P +  +              +     +I  G    
Sbjct: 1440 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1475

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG+    DK   +                        F     
Sbjct: 1476 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFNIHNY----------------FFAKAL 1519

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
            N++      GG  A V            + +S +RR+L +   +   + LP D F     
Sbjct: 1520 NQVRP----GGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1570

Query: 403  IATYLWILSNRKTEERRGKV 422
                  I+  +K +     V
Sbjct: 1571 AEVVSDIIFLQKRDRPLDIV 1590


>gi|167762375|ref|ZP_02434502.1| hypothetical protein BACSTE_00729 [Bacteroides stercoris ATCC
           43183]
 gi|167699481|gb|EDS16060.1| hypothetical protein BACSTE_00729 [Bacteroides stercoris ATCC
           43183]
          Length = 541

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 21/166 (12%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
             +  +Y   +    S   +    F TP  + +     +    D++         ++ DP
Sbjct: 44  DRIGRLYTDTV---TSAFKKSNGQFFTPVSIAYFMGKQISVNKDSV---------SVLDP 91

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM---LIRRLESDPR 269
            CGT       + ++       +I  +     + L P    V        +   +  D R
Sbjct: 92  GCGTAILSCAMIENLVLQSKVKQIELVTYETDENLIPGLQKVLEYITIWGMRHNVRIDCR 151

Query: 270 RDLSKNI------QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
                 I          T+     + +++   +SNPP+ K  ++DK
Sbjct: 152 SYCEDFILSNYSVLYSDTIYGRAESLQKYDLIISNPPYFKLSKEDK 197


>gi|134044465|ref|YP_001101751.1| hypothetical protein YR71pYR1_0057 [Yersinia ruckeri]
 gi|133904828|gb|ABO40845.1| hypothetical protein YR71pYR1_0057 [Yersinia ruckeri]
          Length = 211

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G   F TP ++  L + ++                  Y+P CG+G    +A++ + + 
Sbjct: 89  KKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIHWMENL 135

Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             +H  +       + ++++P     C    L    ES      + +I    TLS
Sbjct: 136 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPKTLSIVGIDTLS 189


>gi|134044860|ref|YP_001102142.1| hypothetical protein YpIP275_pIP1202_0078 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|134047269|ref|YP_001101931.1| hypothetical protein SNSL254_pSN254_0052 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|165938006|ref|ZP_02226566.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|237640241|ref|YP_002891096.1| hypothetical protein peH4H_0053 [Escherichia coli]
 gi|237809961|ref|YP_002894400.1| hypothetical protein pAR060302_0054 [Escherichia coli]
 gi|237810149|ref|YP_002894588.1| hypothetical protein pAM04528_0052 [Salmonella enterica]
 gi|258624193|ref|ZP_05719143.1| putative type I restriction-modification system methyltransferase
           subunit [Vibrio mimicus VM603]
 gi|300925691|ref|ZP_07141550.1| hypothetical protein HMPREF9548_03746 [Escherichia coli MS 182-1]
 gi|309796414|ref|ZP_07690822.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|133905188|gb|ABO41203.1| hypothetical protein SNSL254_pSN254_0052 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|133905394|gb|ABO42156.1| hypothetical protein YpIP275_pIP1202_0078 [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165914029|gb|EDR32646.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|229561460|gb|ACQ77663.1| conserved hypothetical protein [Escherichia coli]
 gi|229561633|gb|ACQ77835.1| conserved hypothetical protein [Salmonella enterica]
 gi|229561816|gb|ACQ78017.1| conserved hypothetical protein [Escherichia coli]
 gi|258583624|gb|EEW08423.1| putative type I restriction-modification system methyltransferase
           subunit [Vibrio mimicus VM603]
 gi|300418192|gb|EFK01503.1| hypothetical protein HMPREF9548_03746 [Escherichia coli MS 182-1]
 gi|308119919|gb|EFO57181.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|324007651|gb|EGB76870.1| hypothetical protein HMPREF9532_02674 [Escherichia coli MS 57-2]
 gi|327536494|gb|AEA95327.1| hypothetical protein pSD853_174_61 [Salmonella enterica subsp.
           enterica serovar Dublin]
 gi|332144503|dbj|BAK19723.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 211

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G   F TP ++  L + ++                  Y+P CG+G    +A++ + + 
Sbjct: 89  KKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIHWMENL 135

Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             +H  +       + ++++P     C    L    ES      + +I    TLS
Sbjct: 136 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPKTLSIVGIDTLS 189


>gi|118601922|ref|YP_908622.1| hypothetical protein P91278ORF_024 [Photobacterium damselae subsp.
           piscicida]
 gi|118614660|ref|YP_908443.1| hypothetical protein P99018ORF_032 [Photobacterium damselae subsp.
           piscicida]
 gi|229516143|ref|ZP_04405592.1| hypothetical protein VCC_000158 [Vibrio cholerae RC9]
 gi|118596751|dbj|BAF38055.1| hypothetical protein P99018ORF_032 [Photobacterium damselae subsp.
           piscicida]
 gi|118596931|dbj|BAF38234.1| hypothetical protein P91278ORF_024 [Photobacterium damselae subsp.
           piscicida]
 gi|229346793|gb|EEO11762.1| hypothetical protein VCC_000158 [Vibrio cholerae RC9]
          Length = 222

 Score = 39.6 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +G   F TP ++  L + ++                  Y+P CG+G    +A++ + + 
Sbjct: 100 KKGTNYFPTPPEIGRLMSLIV----------GSQSSADFYEPCCGSG---INAIHWMENL 146

Query: 231 GSHH--KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             +H  +       + ++++P     C    L    ES      + +I    TLS
Sbjct: 147 IENHGPEALREASIYLEDIDPLMVK-CCMIQLFHYFESRNTTPKTLSIVGIDTLS 200


>gi|333030880|ref|ZP_08458941.1| hypothetical protein Bcop_1769 [Bacteroides coprosuis DSM 18011]
 gi|332741477|gb|EGJ71959.1| hypothetical protein Bcop_1769 [Bacteroides coprosuis DSM 18011]
          Length = 1208

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 66/259 (25%), Gaps = 42/259 (16%)

Query: 53  SAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAK 112
            ++ E       ++I  E           +  + +     +   R  L +     +    
Sbjct: 95  ESIPEILANAKAADISNELMSIAEKDKVLHVLDNTTGNPENEAYRLLLVAACNYLNKLFP 154

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +FE  D  + +         + I  +        D     ++  +Y+  I     EVS 
Sbjct: 155 FLFEGIDDYTELLLPSDLTSPHSIISDVVEGMSEEDCSEVEIIGWLYQFYISERKDEVSG 214

Query: 173 GAE-----------DFMTPRDVVHLATA-----------------------LLLDPDDAL 198
                            TPR +V                            +  + +D  
Sbjct: 215 ATGKVSKEDIPAVTQLFTPRWIVEYMVQNTLGKLWMQNFPNSSLKEKMPYYIETEQEDDF 274

Query: 199 FKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL--------VPHGQELEPE 250
            K S     TL DP CG+G  L  A   +                       +G E++  
Sbjct: 275 LKISSPEELTLVDPACGSGHILVYAFELLTLIYEEEGYRRRDIAQLIIEKNLYGYEIDER 334

Query: 251 THAVCVAGMLIRRLESDPR 269
              +    + ++    D  
Sbjct: 335 AGQLASLAIYLKARSYDQG 353


>gi|289423818|ref|ZP_06425612.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
 gi|289155755|gb|EFD04426.1| superfamily II DNA and RNA helicase [Peptostreptococcus anaerobius
            653-L]
          Length = 2917

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 74/271 (27%), Gaps = 59/271 (21%)

Query: 163  IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            +  + +        F TP+ V+        D               + +P+ G G     
Sbjct: 1166 LSEYEAARESTLTSFYTPKTVI--------DGIYKTLSGMGFKQGNILEPSMGIG----- 1212

Query: 223  AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              N + +             +G EL+  +  +                    +IQ    L
Sbjct: 1213 --NFIGNLPDEMNKSK---FYGVELDSVSGRIGK------------LLYPESDIQV-KGL 1254

Query: 283  SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             +  F+   F   + N PFG+    D++         +                      
Sbjct: 1255 EETGFSNNFFDIAIGNVPFGEYKVNDREYNRNNFLIHDY--------------------F 1294

Query: 343  ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399
              K       GG  A +       +G     +  +RR+L         + LP D F    
Sbjct: 1295 FAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVA 1349

Query: 400  RTNIATYLWILSNRKTEERRGKVQLINATDL 430
             T + + +  L  R +   R +  +  A D 
Sbjct: 1350 GTEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1380


>gi|257060036|ref|YP_003137924.1| hypothetical protein Cyan8802_2208 [Cyanothece sp. PCC 8802]
 gi|256590202|gb|ACV01089.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
          Length = 1218

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 17/164 (10%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
           A +  +          + + +    L +  F   ++H  ++NPP+    +   + ++   
Sbjct: 570 ANLWKKIPNPSLFEHKT-HEKVMDVLKQADFLSPKYHIVVANPPY-MGNKGMNNRLKAFL 627

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           ++             SD   LF   +   LE+    G     V     +F     S   +
Sbjct: 628 QDNYSNV-------KSD---LFSAFMIRILEMTLQKG-EMGFVTPYVWMF----ISSYEK 672

Query: 377 IRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRG 420
           +R  +LE   I +++ L  + F    I    + LSN+     +G
Sbjct: 673 LRTLILEKTTITSLIQLEYNAFAPACIPVATFTLSNQNLPNFKG 716


>gi|208434933|ref|YP_002266599.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
 gi|208432862|gb|ACI27733.1| adenine specific DNA methyltransferase [Helicobacter pylori G27]
          Length = 2808

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 98/318 (30%), Gaps = 69/318 (21%)

Query: 176  DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             + TP     L    +    D L   +    + +++P+ GTG F+           +H  
Sbjct: 974  AYYTP----KLVIDSIYRALDQLGFNNDNHQKEIFEPSLGTGKFI-----------AHAP 1018

Query: 236  IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                    G EL+P + ++               + L  N    +T  ++    + +   
Sbjct: 1019 SDKNYRFMGTELDPTSASIS--------------QFLYPNQVIQNTALENHPFHQDYDAF 1064

Query: 296  LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            + NPP+G       +  E  +++                   FL     +L+      G 
Sbjct: 1065 VGNPPYGNHKIYSSNDAELSNESVHNY---------------FLGKAIKELKD----NGI 1105

Query: 356  AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             A V+  S  F         ++R  + +N      + LP  +F  T       I+  +K 
Sbjct: 1106 GAFVV--SSWFMDAKNP---KMREHIAKNATFLGAIRLPNSVFKATGAEVTSDIVFFKKG 1160

Query: 416  EERRGKVQLINATDLWTSIRN----------EGKKRRIINDDQRRQILDI---YVSRENG 462
             ++        A   +  I N          +  +        + +I++    +   +  
Sbjct: 1161 VDKATNQSFTKAMPYYDKILNSLDDDTLFALQNNRFDSFIPSDQLKIVNAIASHFGFKQE 1220

Query: 463  KFSRML---DYRTFGYRR 477
            K  R     D   FGY+ 
Sbjct: 1221 KLQRWYEEIDTANFGYKE 1238


>gi|291533954|emb|CBL07067.1| N-6 DNA Methylase [Megamonas hypermegale ART12/1]
          Length = 59

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 8/48 (16%)

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
              ++  ++ D        I    TLS      K F   L+NPPFG K
Sbjct: 1   MNAMLHDIDGD--------IMLADTLSNQGKALKDFDVVLANPPFGTK 40


>gi|305679811|ref|ZP_07402621.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
 gi|305660431|gb|EFM49928.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
           14266]
          Length = 490

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 30/132 (22%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    DF TP  +      +L  P              + +PTCG G FL  A       
Sbjct: 3   NNEFGDFQTPLALARRCLEVLALPQHGPI--------RVLEPTCGRGAFLRAAKER---- 50

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                  P  + +G ++  +   V            +       NI   + L+   +   
Sbjct: 51  ------NPTSIRYGIDINADYVQVAR----------NYGTVAHANIFTRN-LTDISWPDP 93

Query: 291 RFH-YCLSNPPF 301
               + + NPP+
Sbjct: 94  TAPLFVIGNPPW 105


>gi|224542975|ref|ZP_03683514.1| hypothetical protein CATMIT_02169 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524113|gb|EEF93218.1| hypothetical protein CATMIT_02169 [Catenibacterium mitsuokai DSM
           15897]
          Length = 212

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 28/150 (18%)

Query: 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYD 211
           D  +  IY  L     S  +     F TP  V  +   + L   D       G    L +
Sbjct: 77  DDYLGKIYMEL-----STGNSHTGQFFTPFHVCEMMAGVALADYD-------GETEYLNE 124

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRD 271
           P+ G G  +      +   G +++    +    Q+L+ +   +    + +  + ++    
Sbjct: 125 PSSGGGANILAYAKVMKAKGYNYQRLLEVKA--QDLDYKCVYMTYVQLSLAGVNAE---- 178

Query: 272 LSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301
               + QG++L        + +  L  P +
Sbjct: 179 ----VVQGNSL------EGKHNVVLHTPMY 198


>gi|81428910|ref|YP_395910.1| putative adenine-specific DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|15212469|gb|AAK92004.1|AF400065_2 putative modification methylase LaaG [Lactobacillus sakei]
 gi|78610552|emb|CAI55603.1| Putative adenine-specific DNA methyltransferase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 336

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 113/337 (33%), Gaps = 43/337 (12%)

Query: 86  YSLSTLGSTNTRNNLES-YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           + L    +T    NLE+ Y+ + +++   I +          L  A  + ++   ++   
Sbjct: 10  FDLIDQTTTLIEQNLETTYLDALTESIANIADGGRVKVE-DNLPDAQTVAQLETIYAT-- 66

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +  +      +    +    +   +V       MTP  + +L   L      A       
Sbjct: 67  VKLNQFDAETIRQALQLATLKGLRQVKVEPNKQMTPDAIGYLVAYL------AEVFGGAD 120

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
            I+T+ DP  GTG  L   MNH+ +   +      L   G + +     +      ++ L
Sbjct: 121 QIKTVLDPVIGTGNLLATVMNHIQNLTGN-----KLQGFGVDNDDSLLELAGISSELQGL 175

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           ++      +      +               +++ P G     ++ A  + H        
Sbjct: 176 DTTLFHQDAIEPLMVN----------PVDIAVADLPIGFYPIDERAADFETHAASGH--- 222

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  S    L +    + ++     GG    ++ +  L    A     ++ +W+ ++
Sbjct: 223 -------SYAHHLLIEQTMHYVKD----GGFGFFLVPNVILETDEA----KQLVKWITKH 267

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421
             ++ +++LP +LF        + +L  +    ++ K
Sbjct: 268 VYLQGLLSLPVNLFKTKEGQKAILVLQKQGAGAQQAK 304


>gi|332296281|ref|YP_004438204.1| hypothetical protein Thena_1460 [Thermodesulfobium narugense DSM
           14796]
 gi|332179384|gb|AEE15073.1| hypothetical protein Thena_1460 [Thermodesulfobium narugense DSM
           14796]
          Length = 1108

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 17/125 (13%)

Query: 77  GYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFS-STIARLEKA----- 130
           G  F   S+Y    +      +       +  D    +F+ F+F+      LEK      
Sbjct: 321 GGLFEPFSDYDWKNIDLLIPNDLFS---NNNEDGILDVFDLFNFTVKEDEPLEKEVAVDP 377

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSE-VSEGAEDFMTPRDVVHLATA 189
            LL KI +  + I    D   +   +     L  +      ++    + TPR++VH    
Sbjct: 378 ELLGKIYEKLNAI--REDNFEEYKKA-----LKSKGSENRFNKEYGVYYTPREIVHFMAQ 430

Query: 190 LLLDP 194
             L  
Sbjct: 431 SALVE 435


>gi|199597330|ref|ZP_03210761.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus HN001]
 gi|199591846|gb|EDY99921.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus HN001]
          Length = 337

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 96/337 (28%), Gaps = 51/337 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ST+     E+     S               +   E    L  +          P+
Sbjct: 22  QQLKSTDIAAITEAGEDLSSGEVMQ-------EDGLPNDEAKKKLEALFGQVKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT +       +F +       
Sbjct: 75  -----EIRQALQLVLVKAIKVDGIEPNKQITPDAMASLATFMAT-----VFDQQQPSQLK 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   G+G  L   MN +     H +    +  +G + +    AV      ++ L+ + 
Sbjct: 125 VADLAVGSGNLLFAVMNQL-----HKERDVTVKGYGVDNDEALLAVAGMSSSLQHLDVEL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                        L  D    K     +S+ P G     ++                   
Sbjct: 180 F--------HQDAL--DGLLFKDIDVVVSDLPVGYYPVDERAKKFATAAKKGH------- 222

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                 S    + +   +++   GG    +    S +F     +G +    WL E    +
Sbjct: 223 ------SYAHHLLIEQSMKVLKPGG--LGMFYVPSRVFQSEEAAGLTA---WLAEKTYFQ 271

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQL 424
            ++ LP D F        L IL     + +R K V L
Sbjct: 272 GLLNLPDDFFADKQAEKSLLILQKPSPDVKRAKQVLL 308


>gi|281204197|gb|EFA78393.1| RasGEF domain-containing protein [Polysphondylium pallidum PN500]
          Length = 942

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 70/228 (30%), Gaps = 46/228 (20%)

Query: 27  KHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEY 86
             +D    +L    L  ++ +L+  +  V E+ +       ++E       +      + 
Sbjct: 519 DESDEADYLLGM--LSDIDGSLQAAKEKVEEESIQNSRLKSEIEDLF-AEKFILQIHLDS 575

Query: 87  SLSTLG-STNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAG---------LLYKI 136
            L  +  + N  + L+      + NAK + E  +  S   +++++           L ++
Sbjct: 576 VLRNIDFNDNIGDMLKKNRELLNMNAKQLPEGVNSDSVKFKVDESNPEKFIILCATLDRL 635

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +  + I        +  M         +F +        F++P +++ L          
Sbjct: 636 IERLTKI-------DNHDM---------KFANVFLLTFRRFVSPIELMELLI-------- 671

Query: 197 ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG 244
                    IR    P       L    ++V+   +  +    +    
Sbjct: 672 ---------IRFCSTPAMELTTTLLQMDDYVSGWRTSKQDQLRISVFN 710


>gi|325971695|ref|YP_004247886.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
 gi|324026933|gb|ADY13692.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
          Length = 1632

 Score = 39.6 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 91/315 (28%), Gaps = 43/315 (13%)

Query: 108  SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
            S   + +    D  +     EK    Y+     +  ++       +V+  +Y+   +   
Sbjct: 816  SKAMQGMISILDEQTPKEDNEKLERFYESVAKRAE-DIDNAEAKQKVIVELYDKFFKTAF 874

Query: 168  SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNH 226
                E      TP ++V      + D     F  S       + DP  GTG F+T  +  
Sbjct: 875  PRTVERLGIVYTPVEIVDFILNSVEDILRKEFGRSLSDENIHILDPFTGTGTFITRLLQQ 934

Query: 227  VADCGSHHKIPPILVPHGQELEPETHAVCVAGM--LIRRLESDPRRDLS---------KN 275
                  + K   +   H  E+    + +    +  +   L+ + + D S         + 
Sbjct: 935  GIISKDNLKRKYLKEIHANEIVLLAYYIASINIENVFHDLQIEQQHDKSVDAIDYIPFEG 994

Query: 276  IQQGST---------LSKDLFTGKRFH----------YCLSNPPFGKKWEKDKDAVEKEH 316
            I    T         L  ++F                  + NPP+    +   D  + + 
Sbjct: 995  ICLTDTFQLGEDNTILVNEVFPKNSQRVNSQKKTPLMVIVGNPPYSIGQKTANDDAQNQS 1054

Query: 317  KNGELGRFGPGLPKISDGSMLFLMH-------LANKLELPPNGGGRAAIVLSSSPLFNGR 369
                  R        S G++   ++         +   L  + GG    V + + L    
Sbjct: 1055 YPLLEERIMNTYATKSSGNLKKALYDSYVKAFRWSSDRLDADNGGIVGFVSNGAWLDGNS 1114

Query: 370  AGSGESEIRRWLLEN 384
                    R+ + E 
Sbjct: 1115 LDG----FRKCIEEE 1125


>gi|317505134|ref|ZP_07963075.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
 gi|315663747|gb|EFV03473.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
          Length = 292

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 64/208 (30%), Gaps = 35/208 (16%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           ++         +   IR   DP+ G G F   A       G    +          +   
Sbjct: 111 IVSAISDALASTNLQIRRCLDPSMGMGAF---AETFAKQAGVVDAMEKD--LLTARISQA 165

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
            H      + ++    +   +L                  ++    SN PFG     D  
Sbjct: 166 LHPYGKGNIFVQNEPFEAIGELED--------------KDKYDLVTSNIPFG-----DFM 206

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370
             ++E+  G+          I +       +   K       GG  A + S   L + R 
Sbjct: 207 VYDREYSKGKDTLKRESTRAIHN-------YFFVKGLDCIKEGGLLAFITSQGVLDSPRN 259

Query: 371 GSGESEIRRWLLENDLIEAIVALPTDLF 398
                 IRR+L++N  + + + LP+ LF
Sbjct: 260 E----AIRRYLMQNSRLISALRLPSSLF 283


>gi|297379675|gb|ADI34562.1| Modification methylase [Helicobacter pylori v225d]
          Length = 545

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 28/165 (16%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
               D   NI Q         T  +F    +NPP+GKK+ +++  
Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKE 222


>gi|145226108|ref|YP_001136762.1| hypothetical protein Mflv_5513 [Mycobacterium gilvum PYR-GCK]
 gi|145218571|gb|ABP47974.1| hypothetical protein Mflv_5513 [Mycobacterium gilvum PYR-GCK]
          Length = 934

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 61/249 (24%), Gaps = 60/249 (24%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPD-------DALFKESPGMIRTLY---------D 211
           ++      +  T  + +      L   +           K+  G++  L+         D
Sbjct: 313 AQTRRELGEHYTSEENILKTLNPLFLDELRAEFDRARTMKDEKGVLTRLWKRLGDIRYMD 372

Query: 212 PTCGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEPET 251
           P CG G F+  A   + D                                 +G E++   
Sbjct: 373 PACGCGNFIIVAFRELRDLELRIMERLQELAGASQLAFDPTLALKVTLDHFYGIEIDEWP 432

Query: 252 HAVCVAGMLIRRLESDPRR-------------DLSKNIQQGSTLSKDLF---TGKRFHYC 295
             +    M +   + D +                  NI  G+ L                
Sbjct: 433 ARIAETAMFLVDRQCDLKLKERFGEAPQRLPIQTQANITVGNALRLQWQELCPSSESVVV 492

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
             NPP+           ++     E  +   G     +   +     A   +      GR
Sbjct: 493 AGNPPY-------LGKKQRTAAQTEDMQLVWGSAYSGEADYV-TAWFAKGADYFGAAVGR 544

Query: 356 AAIVLSSSP 364
            A V ++S 
Sbjct: 545 LAFVTTNSV 553


>gi|311112269|ref|YP_003983491.1| hypothetical protein HMPREF0733_10599 [Rothia dentocariosa ATCC
           17931]
 gi|310943763|gb|ADP40057.1| hypothetical protein HMPREF0733_10599 [Rothia dentocariosa ATCC
           17931]
          Length = 1109

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHL-IRRFGSEVSEGAEDFMTPRDVVHLATA 189
            ++  + +N + ++L    +    + +I + + +     +V     ++ +P         
Sbjct: 361 DVINDVQENINKLDLATFKLKPETVQDILQEIYMSLIPDKVRHLLGEYFSP--------D 412

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV-----ADCGSHHKIPPILVPHG 244
            +++        +  +   L DPTCG+G FL  A+  V      + G+      +    G
Sbjct: 413 WIVEHALDRVGYTGDIEARLIDPTCGSGAFLIQALKRVVSKKEYNIGTEDIKNIVNNIVG 472

Query: 245 QELEPETHAVCVAGMLI 261
            +L P +     A  ++
Sbjct: 473 FDLNPISAISAKANYIL 489


>gi|284036876|ref|YP_003386806.1| type II restriction enzyme, methylase subunit [Spirosoma linguale
           DSM 74]
 gi|283816169|gb|ADB38007.1| type II restriction enzyme, methylase subunit [Spirosoma linguale
           DSM 74]
          Length = 918

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 24/129 (18%)

Query: 157 NIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATALLLDPD-DALFKESPGMIRT------ 208
           +I+  +I+    E    A     T    +      L   D  A   E+    R       
Sbjct: 282 DIFGSMIQAVADEGERSALGMHYTSVPNILKVLNPLFLDDIRAQLDEAEDNSRKLLNLRK 341

Query: 209 ------LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV----------PHGQELEPETH 252
                 ++DP CG+G FL  A  H+ +                        G EL   + 
Sbjct: 342 RLSRIRVFDPACGSGNFLVIAYKHMREIEHEINKRRGETERPTDIPLTNFRGIELRDFSA 401

Query: 253 AVCVAGMLI 261
            +    ++I
Sbjct: 402 EIARLALII 410


>gi|282600669|ref|ZP_05979374.2| SNF2 family protein [Subdoligranulum variabile DSM 15176]
 gi|282571763|gb|EFB77298.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
          Length = 2992

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 89/325 (27%), Gaps = 75/325 (23%)

Query: 105  ASFSDNAKAI--FEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-H 161
              F  N KAI   +  +  +  A  E+  +L +        +      P           
Sbjct: 1370 EKFWRNIKAIATLKQIEQENRYATPEEQHILSQYVGWGGLADAFDPDKPAWAAEYAELKE 1429

Query: 162  LI--RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            L+    + +  +       T   V+               ++       + +P+CG G F
Sbjct: 1430 LLTPEEYEAARASTLNAHYTSPTVIRAIY--------DAVEQMGFRTGNILEPSCGVGNF 1481

Query: 220  LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSK 274
                   +               +G EL+  +  +       A + +   E+  RRD   
Sbjct: 1482 FGMLPESM----------AGSRLYGVELDSISGRIAKQLYPKADITVAGFETTDRRDF-- 1529

Query: 275  NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
                             +   + N PFG+    DK      +K G               
Sbjct: 1530 -----------------YDLAIGNVPFGQYQVNDKAY----NKLGFNI------------ 1556

Query: 335  SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
                  +   K       GG  A V            + +S +RR+L +   +   + LP
Sbjct: 1557 ----HNYFFAKSLDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLP 1607

Query: 395  TDLF---FRTNIATYLWILSNRKTE 416
             + F     T + + +  L  R   
Sbjct: 1608 NNAFKANAGTEVVSDILFLQKRDRP 1632


>gi|331004624|ref|ZP_08328088.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107
            str. F0167]
 gi|330409649|gb|EGG89086.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107
            str. F0167]
          Length = 2532

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 55/415 (13%), Positives = 114/415 (27%), Gaps = 80/415 (19%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +        F TP+ V+                +       + +P+ GTG F+ + 
Sbjct: 1681 SEYEAAKESTLTAFYTPKVVIDAIYH--------TLSDMGFESGNILEPSMGTGRFIGNL 1732

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+  +  +              +   + NIQ      
Sbjct: 1733 PESMQKSK----------FYGIELDSISGQIAK------------KLYPNANIQV-KGFE 1769

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  F+   F   + N PFG+    D++  +      +                       
Sbjct: 1770 ETAFSNNLFDIAVGNVPFGEYRVSDREYEKNNFLIHDY--------------------FF 1809

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K        G  A + SS  +          +IRR++ E       + LP + F     
Sbjct: 1810 AKTLDKVRSKGVIAFMTSSGTMDKRN-----EDIRRYISERAEFLGAIRLPNNTFKGEAG 1864

Query: 401  TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRE 460
            T + + +  L        R ++  I+   +      +G        D  + +L       
Sbjct: 1865 TEVTSDIIFLKK------RDRLLKIDEDWVKLDKNRQGLSYNKYFVDNPQMVLG------ 1912

Query: 461  NGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILK 520
                S       FG     +    +      +  +  ++      KL+   ++  L    
Sbjct: 1913 ----SMQEVPGRFGTTLACIADESKSIKEQLEDAIKNIKGTYEKAKLNEELETEILSADD 1968

Query: 521  PMMQQIYPYGWAESFVKES-----IKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             +    Y     + F +E+     +  N+A   K+ A      A       +   
Sbjct: 1969 NVKNYSYAVIEDKVFFRENSIMQRLLLNKADEEKIGAYLEIEKALRGVITYQKED 2023


>gi|300814911|ref|ZP_07095142.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
 gi|300511001|gb|EFK38270.1| helicase C-terminal domain protein [Peptoniphilus sp. oral taxon 836
            str. F0141]
          Length = 2848

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 59/391 (15%), Positives = 107/391 (27%), Gaps = 72/391 (18%)

Query: 48   LEPTRSAVREKYLAFGGSNIDLE-SFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLES--Y 103
            LE     V E            E    K   ++F  T E     L       NNLE+   
Sbjct: 985  LESDLERVFENLTYKQPEQTTEETQIRKAEAHNFKITEETLPEKLSPSERLNNNLEAVSM 1044

Query: 104  IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL- 162
            +       + +  D      +A+    G L ++       +             + E+L 
Sbjct: 1045 LNRVESGEREL--DIAAQEVLAKYVGWGGLSEVFDESKDGQWKEARA------FLKENLS 1096

Query: 163  IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
            +  + +        F TP+ V+        D               + +P+ G G     
Sbjct: 1097 LSEYEAARESTLTSFYTPKTVI--------DGIYKTLSSMGFKQGNILEPSMGIG----- 1143

Query: 223  AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
              N + +             +G EL+  +  +                   ++  Q   L
Sbjct: 1144 --NFIGNLPDEMNKSK---FYGVELDSVSGRIGK-------------LLYPESEVQVKGL 1185

Query: 283  SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHL 342
             +  F+   F   + N PFG+    D++         +                      
Sbjct: 1186 EETSFSNNFFDVAIGNVPFGEYKVNDREYNRNNFLIHDY--------------------F 1225

Query: 343  ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---F 399
              K       GG  A +       +G     +  +RR+L         + LP D F    
Sbjct: 1226 FAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVA 1280

Query: 400  RTNIATYLWILSNRKTEERRGKVQLINATDL 430
             T + + +  L  R +   R +  +  A D 
Sbjct: 1281 GTEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1311


>gi|253999778|ref|YP_003051841.1| hypothetical protein Msip34_2072 [Methylovorus sp. SIP3-4]
 gi|253986457|gb|ACT51314.1| hypothetical protein Msip34_2072 [Methylovorus sp. SIP3-4]
          Length = 255

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 51/156 (32%), Gaps = 15/156 (9%)

Query: 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLA 187
           +   LL +    F       +   +  +  +Y+  +        +    F+TP DV  L 
Sbjct: 73  DNYKLLTQATGLFVNQFKTNEPFTNI-VGEMYDEYL-------GDVLGQFLTPNDVADLV 124

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             L  + +               D  CG+G  +  ++ ++       +    +     ++
Sbjct: 125 AELHFEKE-----PITKNKIIADDMGCGSGSLILASLRNILKNHGK-EALKHIELVAMDI 178

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
           + +   +C   +++  L        +  +   +TL+
Sbjct: 179 DMKMVQLCSIQIVLHCL-FHRIEINNLKMYWANTLT 213


>gi|146283764|ref|YP_001173917.1| type II restriction enzyme, methylase subunit [Pseudomonas stutzeri
           A1501]
 gi|145571969|gb|ABP81075.1| type II restriction enzyme, methylase subunit [Pseudomonas stutzeri
           A1501]
          Length = 1635

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 23/144 (15%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      E +  + TP  +        L            +  T+ +P  G+  FL 
Sbjct: 550 FIYRLAGRAREKSASYYTPEVLTQCLVEHALKEILPGKTADEILQLTICEPAMGSAAFLN 609

Query: 222 DAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVCVAGM 259
           +A+N +A+     K                              G +L P    +    +
Sbjct: 610 EAVNQLAEAYLQAKQKELGQSIPHEQYTEEKQRVKMYIADSNVFGVDLNPIAVELAEVSL 669

Query: 260 LIRRL-ESDPRRDLSKNIQQGSTL 282
            +  + +          +  G++L
Sbjct: 670 WLNAIFKGSHVPWFGLQLYNGNSL 693


>gi|332828307|gb|EGK01019.1| hypothetical protein HMPREF9455_02808 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 377

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 90/275 (32%), Gaps = 43/275 (15%)

Query: 397 LFFRTNIATYLWILSNRKTEERRGKVQLIN-----ATDLWTSIRNEGKKRRIINDDQRRQ 451
           L+F  N  +   + +     E +G V   +       D+   + N  +K + +    R  
Sbjct: 81  LYFNKNTKSTFVLANKGWKVELKGDVLYPDLIDVKGGDVNDDLTNFKEKNKTLLK-SRAD 139

Query: 452 ILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP------------------LRMSFILDKT 493
           IL+        + S ++       + I                       L  +F  D+T
Sbjct: 140 ILNTAEKNIKNEDSLVVKDYVVELKNINFELSNIAAAYVKANPDKIASVMLINTFFKDET 199

Query: 494 GLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
            + RL+ +++  K   +      + LK    +I            SIK+ + KT+++   
Sbjct: 200 SIPRLDENLSLLKGKAIDFPLTAE-LKSFRDKIKLSAVNAYAPGFSIKNIQDKTVQLSDF 258

Query: 554 KSFIVAFINAFGR----KDPRAD------PVTDVNGEWIPDTNLTEYENVPYLESIQDYF 603
           +   V  + A       +D + D       +          + + + E VP  E+I D  
Sbjct: 259 RGKYVLLLFAATTCDVCRDEKQDAIDVYNELKKQKKNIEFISIVKDSEQVPLSENIADSV 318

Query: 604 VREVSPHVPDAYIDKIFIDEKDKEIGRVGYEINFN 638
              + P V   +  K F     +       EI +N
Sbjct: 319 KWNILP-VKGGWAAKPFDTYYIR-------EIPYN 345


>gi|260887938|ref|ZP_05899201.1| putative restriction enzyme [Selenomonas sputigena ATCC 35185]
 gi|260862338|gb|EEX76838.1| putative restriction enzyme [Selenomonas sputigena ATCC 35185]
          Length = 846

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 27/201 (13%)

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L R    +  R +   IQQ    S      +++   ++NPP+           E   K
Sbjct: 463 NLLFRAWIDEVERRILPLIQQAKVFS------QKYDVIVTNPPYLGSTRFSFKLNEYVKK 516

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                         SD SM+ L      L+      G  A V ++S +    + S   ++
Sbjct: 517 YFPNE--------KSDLSMVMLKK---SLQETAKTNGYVAFVTTASWM----SLSSFEKL 561

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYL--WILSNRKTEERRGKVQLIN--ATDLWTS 433
           R ++ ++  I+ +V   T+LF        +  W++   K   R   V+L++   +     
Sbjct: 562 RSYMYKDCAIDTLVDCGTELFEGKVGHNSIVSWVVRKTKFNYRMTAVRLVDYCYSRRDEK 621

Query: 434 IRNEGKKRRII--NDDQRRQI 452
                 K+       +   +I
Sbjct: 622 EVEFFNKKNYFVATQENFSKI 642


>gi|225870148|ref|YP_002746095.1| helicase [Streptococcus equi subsp. equi 4047]
 gi|225699552|emb|CAW93149.1| putative helicase [Streptococcus equi subsp. equi 4047]
          Length = 2913

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 108/397 (27%), Gaps = 84/397 (21%)

Query: 48   LEPTRSAVREKYLAFGGSNI-DLESFVKVAGYSFYNTSEYSLSTLGS-TNTRNNLESY-- 103
            LE     V E         I       K   ++F  T E     L       NNLE+   
Sbjct: 1051 LESDLERVFENLTYKKPETIAKESEIKKAEAHNFKITEETLPDKLSPSERLNNNLEAISM 1110

Query: 104  ---IAS----FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMS 156
               I S    F   A+ +   +     +A +       +  +  S ++ +          
Sbjct: 1111 LSRIESGQREFDSTAQEVLARYVGWGGLADVFDEEKGGQWKEARSFLKENLSQAE----- 1165

Query: 157  NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
              YE       +        F TP+ V+        D       +       + +P+ G 
Sbjct: 1166 --YE-------AARESTLTSFYTPKTVI--------DGVYKTLSDMGFKSGNILEPSMGI 1208

Query: 217  GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
            G       N + +             +G EL+  +  +                +    I
Sbjct: 1209 G-------NFIGNLPDEMNKSK---FYGVELDSISGRIGKL----------LYPESDIQI 1248

Query: 277  QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM 336
            +    L +  F+   F   + N PFG+    D++         +                
Sbjct: 1249 KG---LEETSFSNNFFDVAIGNVPFGEYKVNDREYNRNNFLIHDY--------------- 1290

Query: 337  LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
                    K       GG  A +       +G     +  +RR+L         + LP D
Sbjct: 1291 -----FFAKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPND 1340

Query: 397  LF---FRTNIATYLWILSNRKTEERRGKVQLINATDL 430
             F     T + + +  L  R +   R +  +  A D 
Sbjct: 1341 TFKGTAGTEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1377


>gi|210635262|ref|ZP_03298474.1| hypothetical protein COLSTE_02405 [Collinsella stercoris DSM 13279]
 gi|210158480|gb|EEA89451.1| hypothetical protein COLSTE_02405 [Collinsella stercoris DSM 13279]
          Length = 876

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 32/144 (22%), Gaps = 31/144 (21%)

Query: 129 KAGLLYKICKNFSGIELH-------PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPR 181
           +  +L+ +  +                   +  + + +    R+   E    A    TP 
Sbjct: 191 EHDVLFHLVADIPEEAWDDVEVLGWMYQFYNSELKDDFFKSKRKAAVEDLAPATQLFTPD 250

Query: 182 DVVHLATALLL------------------------DPDDALFKESPGMIRTLYDPTCGTG 217
            +V       L                           +           T  DP CG+G
Sbjct: 251 WIVRYMVENSLGRLWMLNNPGSRLREGMAYYIEPDAGHEDFIHIEGPEDITFCDPACGSG 310

Query: 218 GFLTDAMNHVADCGSHHKIPPILV 241
             L  A   +    +        V
Sbjct: 311 HILVYAFELLFRMYAERGYRERDV 334


>gi|160946660|ref|ZP_02093863.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
 gi|158447044|gb|EDP24039.1| hypothetical protein PEPMIC_00618 [Parvimonas micra ATCC 33270]
          Length = 2913

 Score = 39.6 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 75/258 (29%), Gaps = 59/258 (22%)

Query: 176  DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             F TP+ V+        D       +       + +P+ G G F+ +  + +        
Sbjct: 1182 AFYTPKAVI--------DGVYRTLSDMGFKSGNILEPSMGVGNFIGNLPDEM-------- 1225

Query: 236  IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   +G EL+  +  +                +    I+    L +  F+   F   
Sbjct: 1226 --SKSKFYGVELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDVV 1270

Query: 296  LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            + N PFG+    D++  +      +                        K       GG 
Sbjct: 1271 IGNIPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGI 1310

Query: 356  AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
             A +       +G     +  +RR+L         + LP D F     T + + +  L  
Sbjct: 1311 IAFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKK 1365

Query: 413  RKTEERRGKVQLINATDL 430
            R +   R +  +  A D 
Sbjct: 1366 RDSIRERDEDWIHLAEDE 1383


>gi|225020176|ref|ZP_03709368.1| hypothetical protein CORMATOL_00177 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946920|gb|EEG28129.1| hypothetical protein CORMATOL_00177 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 490

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 30/132 (22%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    DF TP  +      +L  P              + +PTCG G FL  A       
Sbjct: 3   NNEFGDFQTPLALARRCLEVLALPQHGPI--------RVLEPTCGRGAFLRAAQER---- 50

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                  P  + +G ++  +   V            +       NI   + L+   +   
Sbjct: 51  ------NPTSIRYGIDINADYVQVAR----------NYGTVAHANIFTRN-LADISWPDP 93

Query: 291 RFH-YCLSNPPF 301
               + + NPP+
Sbjct: 94  TAPLFVIGNPPW 105


>gi|222528051|ref|YP_002567767.1| hypothetical protein pRS5_p4 [Pediococcus pentosaceus]
 gi|222446103|emb|CAQ57692.1| hypothetical protein [Pediococcus pentosaceus]
          Length = 1417

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 84/299 (28%), Gaps = 45/299 (15%)

Query: 48   LEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASF 107
             +  +  ++E Y       +  ++       +   T              +++ + +  F
Sbjct: 805  FKNKKQQIQENYKKELAQKVANQTKQLANQTT--ETLLKKAEEKKKNTVEDDIRARLRGF 862

Query: 108  SDNAKAIF--------EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIY 159
            +    +          E  +F   I       +       F  +        + + +   
Sbjct: 863  ARTIPSFLMAYGAPTTELANFDQNIKDDVFKEVTGITLAQFRSLRDTYHFFDETIFNESV 922

Query: 160  EHLIRRFGSEVSEGAE----------------DFMTPRDVVHLATALLLDPDDALFKESP 203
            +  +R+     +                       TP+ VV L    L + +  +FK+  
Sbjct: 923  QEFLRKKSQLANYFDGSQNEDIFDYIPAQKTNQIFTPKRVVKLMLDTLEEEEPNIFKD-- 980

Query: 204  GMIRTLYDPTCGTGGFLTD--------AMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255
               RT  D    +G +LT+          + + +     K       +G       + + 
Sbjct: 981  -KNRTFADLYVKSGLYLTEIIKRLYIGLEDQIPESNERLKHILEKQIYGFAPSEIIYNIA 1039

Query: 256  VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDA 311
                    + S      S +++Q   +       +   +F   + NPP+ +  +KD   
Sbjct: 1040 K-----NFIFSPFSNLDSSHLKQLDMIPYAKGEKRLNVKFDVVVGNPPYQRNDKKDGKG 1093


>gi|116747858|ref|YP_844545.1| hypothetical protein Sfum_0410 [Syntrophobacter fumaroxidans MPOB]
 gi|116696922|gb|ABK16110.1| hypothetical protein Sfum_0410 [Syntrophobacter fumaroxidans MPOB]
          Length = 1147

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 34/173 (19%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLES 102
             +  LEP    +  + L    S+ D           F N   +            N+  
Sbjct: 288 FFDDILEP----LFYEALRNDRSHDDDYYSRFNCKIPFLNGGLFDPID-DYDWVHTNINL 342

Query: 103 YIASFS-----------DNAKAIFEDFDFS-STIARLEKA-----GLLYKICKNFSGIEL 145
             + FS           D    IF+ ++F+      LEK       LL K  + F+ I  
Sbjct: 343 PDSLFSNQNRTAEGDIGDGILDIFDRYNFTVKEDEPLEKEVAIDPELLGKAYEKFNAI-- 400

Query: 146 HPDTVPDRVMSNIYEHLIRRFGS----EVSEGAEDFMTPRDVVHLATALLLDP 194
            PD   +      Y+ ++R        + ++    + TPR++VH      L  
Sbjct: 401 RPDNFEE------YKQVLRSGKKGDENKFNKQFGVYYTPREIVHYMCRQSLIN 447


>gi|313773438|gb|EFS39404.1| conserved domain protein [Propionibacterium acnes HL074PA1]
 gi|313831232|gb|EFS68946.1| conserved domain protein [Propionibacterium acnes HL007PA1]
 gi|313834254|gb|EFS71968.1| conserved domain protein [Propionibacterium acnes HL056PA1]
 gi|314974108|gb|EFT18204.1| conserved domain protein [Propionibacterium acnes HL053PA1]
 gi|314976602|gb|EFT20697.1| conserved domain protein [Propionibacterium acnes HL045PA1]
 gi|314984265|gb|EFT28357.1| conserved domain protein [Propionibacterium acnes HL005PA1]
 gi|315095452|gb|EFT67428.1| conserved domain protein [Propionibacterium acnes HL038PA1]
 gi|327328490|gb|EGE70252.1| type II restriction enzyme, methylase subunit [Propionibacterium
           acnes HL096PA2]
 gi|327444277|gb|EGE90931.1| conserved domain protein [Propionibacterium acnes HL043PA2]
 gi|327444843|gb|EGE91497.1| conserved domain protein [Propionibacterium acnes HL043PA1]
 gi|328759925|gb|EGF73509.1| type II restriction enzyme, methylase subunit [Propionibacterium
           acnes HL099PA1]
          Length = 853

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTTEEILHLSVCEPALGSGAF 567

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723


>gi|188527264|ref|YP_001909951.1| type II adenine specific methyltransferase [Helicobacter pylori
           Shi470]
 gi|188143504|gb|ACD47921.1| type II adenine specific methyltransferase [Helicobacter pylori
           Shi470]
          Length = 816

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 28/165 (16%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDA 311
               D   NI Q         T  +F    +NPP+GKK+ +++  
Sbjct: 181 RYHLDC-PNIVQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQKE 222


>gi|319902462|ref|YP_004162190.1| hypothetical protein Bache_2651 [Bacteroides helcogenes P 36-108]
 gi|319417493|gb|ADV44604.1| protein of unknown function DUF450 [Bacteroides helcogenes P
           36-108]
          Length = 1000

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 72/258 (27%), Gaps = 74/258 (28%)

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAMNH 226
           SE  +      TP  +V       + P       +  ++   + DP CG+G FL    +H
Sbjct: 342 SEFRKSNGAVTTPEHIVQNTIDCTIAPQYLQSLTNEQILDLKILDPACGSGVFLVSIYDH 401

Query: 227 VADCGSH---------------------------HKIPPILVPHGQELEPETHAVCVAGM 259
           ++                                 K+      HG ++  E   V    +
Sbjct: 402 LSTQIERNIEGKQDSLPDQYLYEKVGKKCLNLRGRKLIVNQCLHGVDINQECVEVAKLSL 461

Query: 260 LIRRLESDPRRDLSK--------------NIQQGSTLSK--------------------- 284
            ++ ++     D +               NI+ G++L +                     
Sbjct: 462 SLKIIDGYEPSDFNNAGLYGSQILHGVGVNIKCGNSLVEPDIMERVSSITENLEELAATN 521

Query: 285 ---------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                    D+F    F + + NPP+     K+ +            R+G       D +
Sbjct: 522 IFDYRTAFSDVFDSGGFDFVIGNPPYV--EVKNYNVALPCMSVYIKQRYGSSRNGKIDLA 579

Query: 336 MLFLMHLANKLELPPNGG 353
           + F+      L    + G
Sbjct: 580 IPFIERGIELLNEYGSLG 597


>gi|227500974|ref|ZP_03931023.1| methylase [Anaerococcus tetradius ATCC 35098]
 gi|227216896|gb|EEI82291.1| methylase [Anaerococcus tetradius ATCC 35098]
          Length = 934

 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 65/263 (24%), Gaps = 68/263 (25%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            +F D D    I RL     +  I  N + +      +   +  +++E  +     E   
Sbjct: 271 GLFSDMDIE--IPRLNPN--IVDIILNRASLGFDWSEISPTIFGSVFESTL---NPETRR 323

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFK-------------------ESPGMIRTLYDPT 213
                 T    +H     L   D                         +        DP 
Sbjct: 324 TGGMHYTSIKNIHKLIDPLFLDDLKEEFEEIKEIAQVKQKKQRLEELHNKIANLKFLDPA 383

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPIL--------------------------VPHGQEL 247
            G+G FLT+    +    +      I                             +G E+
Sbjct: 384 AGSGNFLTEIYISLRKLENKIIEEKIRKKDVISISFIDESSEELENPIRVNLGQFYGIEI 443

Query: 248 EPETHAVCVAGM-------------LIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKR 291
                 V    +             +I +           NI + + L     DL   + 
Sbjct: 444 NDFAVTVARTALWISEDQMMKETMNIIHQKMDILPLKSYANIVEANALTMDWNDLVKAEE 503

Query: 292 FHYCLSNPPFGKKWEKDKDAVEK 314
             Y + NPPF      DK+  + 
Sbjct: 504 LDYIMGNPPFVGARLMDKEQRKD 526


>gi|289663951|ref|ZP_06485532.1| hypothetical protein XcampvN_12985 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 354

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 34/159 (21%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
                ++DP CG G  L  A     +             HG E++P    +    +    
Sbjct: 51  QPGEQVFDPFCGFGSTLLAAALEARN------------AHGMEIDPARAQLARTRLQRHA 98

Query: 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +E+        N                   CL+N P+     + +    + + +G+ G 
Sbjct: 99  VEAPVLISTLVN----------KTPAAPIDLCLTNVPYFGCHWQGEALPGQLYASGDYGS 148

Query: 324 FGPGLPKISDGSMLFLMHLANKLELPPNGGGR-AAIVLS 361
           +  G           +  + + L      GG   A+V +
Sbjct: 149 YLTG-----------MRAVFHALRKQLRPGGMGVAMVQN 176


>gi|281420196|ref|ZP_06251195.1| hypothetical protein PREVCOP_04065 [Prevotella copri DSM 18205]
 gi|281405691|gb|EFB36371.1| hypothetical protein PREVCOP_04065 [Prevotella copri DSM 18205]
          Length = 1066

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 89/345 (25%), Gaps = 74/345 (21%)

Query: 78  YSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFD-FSSTIARLEKAGLLYKI 136
             F+N+  +    L         ++ + + +D   + F     +     R+         
Sbjct: 266 QVFWNSPSFKTQALR----LQPFKTLVNALADELNSPFSKIGIWYDNTRRM--------- 312

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL--LDP 194
               S I L    +       +YE  +  +  +       + TP  +   A   +  + P
Sbjct: 313 ---LSCIRLSEHQITTPNFHELYESFLAAYDGKTRNDFGAWYTPMPLAEYAAKFVDAILP 369

Query: 195 DDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254
                +        + DP CGTG         +    +   +       G E+ P  +A+
Sbjct: 370 SVLPGENVRDKAIKVVDPCCGTGT-------FIEAVLNKMPLLEGSKIIGFEILPVPYAL 422

Query: 255 C--VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH------------------- 293
                 ML      D   +    +   +TLS   F                         
Sbjct: 423 ANYRISML------DVTDNTDIVVVLTNTLSDSTFKQTHIEGRASDVVSTFFLNEQRKAK 476

Query: 294 --------YCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD-GSML-----FL 339
                     + NPP         +  +   K     R      + +    +      FL
Sbjct: 477 KLSEPPLTIIIGNPPCS-DSVDINNEGKIIAKLMNDFRPKVRKGRSNKQKQLANEMTKFL 535

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                K E         A+VL                 R++L+E+
Sbjct: 536 RWCLFKAEKSRP--SIFALVLP----STFAQNESFVNARKYLVEH 574


>gi|288927824|ref|ZP_06421671.1| helicase [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330658|gb|EFC69242.1| helicase [Prevotella sp. oral taxon 317 str. F0108]
          Length = 1102

 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 50/236 (21%)

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFL------TDAMNHVADCGSHHKIPPILVPHG 244
           ++         +   +R   DP+ G G F          ++ +       +I   L P+G
Sbjct: 111 IVSAIADALSATDVQVRRCLDPSAGMGAFTETFAKQAGMVDAMEKDLLTARITQALHPYG 170

Query: 245 QELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304
           ++            + +R+   +   +L                  ++    SN PFG  
Sbjct: 171 KD-----------NIFVRQEPFEAIGELED--------------KDKYDLITSNIPFGDF 205

Query: 305 WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364
              D+   + E+                  +  F+     K       GG    + S   
Sbjct: 206 MVYDRSYSKGENILKRESTRTIH-------NYFFV-----KGLDTIKEGGLLTFITSQGV 253

Query: 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEE 417
           L + +       IRR+L++N  + + + LP+ +F     T++ + L +L  +  +E
Sbjct: 254 LDSPKNE----AIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQKQSGKE 305


>gi|294776307|ref|ZP_06741790.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
 gi|294449847|gb|EFG18364.1| N-6 DNA Methylase [Bacteroides vulgatus PC510]
          Length = 1907

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 79/264 (29%), Gaps = 53/264 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++              +          + +P+ G G F+               
Sbjct: 104 AFYTPPEITDAIA--------DVLHGRGIRPDRVLEPSAGVGAFV--------------- 140

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G + + +  A     ++  R+      D    +Q    + K  FTG  F   
Sbjct: 141 ----DAVLGYKPDADIMAFEK-DLMTGRILKHLHPDQKVRVQGFEKIEKP-FTGY-FDLV 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D    + E               I +    FL     K       GG 
Sbjct: 194 ISNIPFG-----DVAVFDPEFTGSHDPARRSAAKTIHN--YFFL-----KSLDTVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++ +     +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPSNAPIREYMMRHANPVGVARLPNNLFTDNAGTEVGSDLIILQK 297

Query: 413 RKTEERRGKVQLINATDLWTSIRN 436
              ++R     L +  +++     
Sbjct: 298 NSGKKRE----LYDYEEMFIQTGK 317


>gi|257438349|ref|ZP_05614104.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
 gi|257199180|gb|EEU97464.1| N-domain protein, SNF2 family [Faecalibacterium prausnitzii A2-165]
          Length = 2422

 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 113/401 (28%), Gaps = 80/401 (19%)

Query: 49   EPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNN---LESYIA 105
            EPT     +K       N + ++F   A       SE      G+ +  ++   +     
Sbjct: 756  EPTPDEELDKLPISVEVNGEWQTFPDAAAADEALNSEPMPEAAGNFHITDDDLGVGGPKQ 815

Query: 106  SFSDNAKAIFEDFDFSSTIA--RLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE-HL 162
             ++ N +AI   F           E+  +L +        +       +     +    L
Sbjct: 816  KYARNIEAIRTLFRLEQEHRGATAEEQQVLSQYVGWGGLADAFDPDKDNWAKEYMELKGL 875

Query: 163  IRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
            +    + +  S       T   V+               ++       + +P+ G G F 
Sbjct: 876  LSEDEYAAARSSTLNAHYTSPVVIRSIY--------DAVEKMGFQSGNILEPSMGVGNFF 927

Query: 221  TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV-----AGMLIRRLESDPRRDLSKN 275
                  +AD             +G EL+  T  +       A + +   E+  RRD    
Sbjct: 928  GMLPTSMAD----------SRLYGVELDSITGRIAKKLYPQADITVAGFETTDRRDF--- 974

Query: 276  IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS 335
                            +   + N PFG+    DK      +K G            S  +
Sbjct: 975  ----------------YDLAVGNVPFGQYKVNDKAY----NKLGF-----------SIHN 1003

Query: 336  MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
              F   +          GG  A V            S +S  R+ + E   +   + LP 
Sbjct: 1004 YFFAKAI-----DQVRPGGVVAFVT-----SRYTMDSKDSTARKHMAERADLLGAIRLPN 1053

Query: 396  DLF---FRTNIATYLWILSNRKTEER--RGKVQLINATDLW 431
            + F     T + + +  L  R          VQL    + +
Sbjct: 1054 NAFKANAGTEVVSDIIFLQKRDRPADIEPTWVQLGQTENGF 1094


>gi|190149639|ref|YP_001968164.1| Modification methylase AccI [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|190151094|ref|YP_001969619.1| Modification methylase AccI [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189914770|gb|ACE61022.1| Modification methylase AccI [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|189916225|gb|ACE62477.1| Modification methylase AccI [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
          Length = 441

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 25/171 (14%)

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSK---DLFT--GKRFHYCLSNPPFGKKWEKDKDAVE 313
           M +   E D        I++  TL     D F   G  +   + NPP+G   + +K +  
Sbjct: 1   MSVINNELDLYDTSELWIKETDTLIDNEIDYFAKTGGYYDKVIGNPPYGAWQDHEKRSTL 60

Query: 314 KEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSG 373
           K+   G   +             LFL+   + L+      G  + ++  + +F       
Sbjct: 61  KKKYLGHYVKETYT---------LFLLRCLSVLKPK----GLLSFIIPDTFMFLNM---- 103

Query: 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNI-ATYLWILSNRKTEERRGKVQ 423
            S +R+ LL N  I+ ++  P+  F   N   + L I++  K    +G  Q
Sbjct: 104 HSNLRKTLLTNAKIKEVLIFPSKFFPGVNFGYSNLSIITLEKC--CKGDYQ 152


>gi|160914103|ref|ZP_02076325.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991]
 gi|158433914|gb|EDP12203.1| hypothetical protein EUBDOL_00111 [Eubacterium dolichum DSM 3991]
          Length = 2685

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 61/256 (23%), Gaps = 60/256 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  S       T   V+      +                 + +P+ G G F    
Sbjct: 1093 EEYAAARSSTLNAHYTSPTVIQAIYEAV--------SRMGFETGNILEPSMGVGNFFGML 1144

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+P +  +              +     +I  G    
Sbjct: 1145 PEEMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1180

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG+    DK   +                              
Sbjct: 1181 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFNIHNY--------------------FF 1220

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
             K       GG  A V            + +S +RR+L +   +   + LP D F     
Sbjct: 1221 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1275

Query: 403  IATY--LWILSNRKTE 416
                  +  L  R   
Sbjct: 1276 AEVVSDIIFLQKRDRP 1291


>gi|327457837|gb|EGF04492.1| hypothetical protein HMPREF9586_00414 [Propionibacterium acnes
           HL083PA2]
          Length = 1142

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324


>gi|315100389|gb|EFT72365.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
          Length = 1142

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324


>gi|315081168|gb|EFT53144.1| conserved domain protein [Propionibacterium acnes HL078PA1]
          Length = 1541

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723


>gi|315079603|gb|EFT51596.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
          Length = 1542

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723


>gi|314968417|gb|EFT12515.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
          Length = 1541

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723


>gi|314957551|gb|EFT01654.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
          Length = 1142

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324


>gi|313801281|gb|EFS42532.1| conserved domain protein [Propionibacterium acnes HL110PA2]
 gi|313829490|gb|EFS67204.1| conserved domain protein [Propionibacterium acnes HL063PA2]
 gi|313839996|gb|EFS77710.1| conserved domain protein [Propionibacterium acnes HL086PA1]
 gi|314963755|gb|EFT07855.1| conserved domain protein [Propionibacterium acnes HL082PA1]
 gi|315109106|gb|EFT81082.1| conserved domain protein [Propionibacterium acnes HL030PA2]
          Length = 1541

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723


>gi|313763500|gb|EFS34864.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313816682|gb|EFS54396.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|314914798|gb|EFS78629.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314919385|gb|EFS83216.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314920707|gb|EFS84538.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314954458|gb|EFS98864.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|315099128|gb|EFT71104.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|327454879|gb|EGF01534.1| hypothetical protein HMPREF9581_01066 [Propionibacterium acnes
           HL087PA3]
 gi|328755289|gb|EGF68905.1| hypothetical protein HMPREF9579_01317 [Propionibacterium acnes
           HL087PA1]
 gi|328758230|gb|EGF71846.1| hypothetical protein HMPREF9588_00869 [Propionibacterium acnes
           HL025PA2]
          Length = 1142

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 109 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 168

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 169 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 226

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 227 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 277

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 278 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 324


>gi|295131129|ref|YP_003581792.1| hypothetical protein HMPREF0675_4648 [Propionibacterium acnes
           SK137]
 gi|291375686|gb|ADD99540.1| conserved hypothetical protein [Propionibacterium acnes SK137]
          Length = 853

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723


>gi|289426361|ref|ZP_06428104.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289153089|gb|EFD01807.1| conserved hypothetical protein [Propionibacterium acnes SK187]
          Length = 957

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-DALFKESPGMIRTLYDPTCGTGGF 219
             + R      + +  + TP  +        L+   D        +  ++ +P  G+G F
Sbjct: 508 EFVFRLSGRARQQSASYYTPEVLTRFTVGQALEELLDDTTTAEEILHLSVCEPALGSGAF 567

Query: 220 LTD-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
             +     A  ++    +          +  +L+     + +    +  ++ +       
Sbjct: 568 AIEATRQLAEQYLTRRQAELGRRIDPEDYPAQLQRTKAYIALHN--VYGVDLNATAVEFA 625

Query: 275 NIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPK 330
            I    TL  D          L  P FG    +    +   H    ++    +     P 
Sbjct: 626 EI----TLWLD-----TMASGLDAPWFGLHLRRGNSLIGARHAVYTRDQLTSKAWLTTPP 676

Query: 331 ISDGSMLFLMHLANKLELP----PNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                 + L  LA +L+          G     L  +  +   A S E++ 
Sbjct: 677 TD----VPLTDLAARLDDDAVDPTQADGSIPHFLVPAAGWGSSADSKEAKT 723


>gi|210622662|ref|ZP_03293302.1| hypothetical protein CLOHIR_01250 [Clostridium hiranonis DSM 13275]
 gi|210154100|gb|EEA85106.1| hypothetical protein CLOHIR_01250 [Clostridium hiranonis DSM 13275]
          Length = 386

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 36/148 (24%)

Query: 204 GMIRTLYDPTCGTGGFLTDAM------------NHV----------------ADCGSHHK 235
              RTL DP CG+G  L +A               +                 +      
Sbjct: 191 RPGRTLVDPMCGSGTILIEAAMMGLNMAPGLNREFISEKWRTIDKKIWWDTRREAFDQMN 250

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                  +G +++PE+  +      I  +        +  I      + +  + + + + 
Sbjct: 251 EDLDFKIYGYDIDPESIEIAKENAEIAGV--------ADYIDFAVADATEFKSDEEYGFI 302

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGR 323
           ++NPP+G++ E ++       + G   R
Sbjct: 303 VTNPPYGERLESEESVKLLYKELGYAFR 330


>gi|108562880|ref|YP_627196.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPAG1]
 gi|107836653|gb|ABF84522.1| type II adenine specific methyltransferase [Helicobacter pylori
           HPAG1]
          Length = 545

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE   +   +        + TP  +V         P D    ++    
Sbjct: 86  ENSSDLEKLGSHYE---KELSNTTRNLEGIYYTPNRIVE---QRFTLPKDFDASQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q   LS       +F    +NPP+GKK+ +D+    +  K         
Sbjct: 181 RYHLDC-PNIAQKDFLSLKHTP--QFDCIFTNPPWGKKYNQDQK---ENFKQQFN----- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|119714054|ref|YP_919196.1| helicase domain-containing protein [Nocardioides sp. JS614]
 gi|119525963|gb|ABL79333.1| helicase domain protein [Nocardioides sp. JS614]
          Length = 1925

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 65/245 (26%), Gaps = 58/245 (23%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  T   +V    + L                 + +P CG+G F+  A +HV D  
Sbjct: 267 TTLSAHYTDAALVKAVWSALGTAGFDQ-----SAGGRVLEPGCGSGTFIGFAPDHVRD-- 319

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
                       G EL+P T  V                  + +I+ G + ++      +
Sbjct: 320 ----------VVGVELDPTTARVA------------SLLYPAADIR-GESFAETRLPEGK 356

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
               + N PF      D              R G  L            +   K      
Sbjct: 357 RDLVIGNVPFADVVPHDST----------YNRLGLSLHN----------YFIYKSLHLVR 396

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408
            GG  A++ S   +            R    +   +   + LP         T++ T L 
Sbjct: 397 PGGVVAVLTSRWTMDAANPA-----AREAFADMADLVTALRLPNQTHHQAAGTDVITDLL 451

Query: 409 ILSNR 413
           +   R
Sbjct: 452 VFRRR 456


>gi|159029024|emb|CAO90010.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 920

 Score = 39.2 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 48/212 (22%), Gaps = 50/212 (23%)

Query: 166 FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDP 212
              +         T    +      L   D     E     R                DP
Sbjct: 298 MNPKERRNLGAHYTSEKNIQKVIKPLFLDDLNREFEKIKGNRNKLLEFQKKIANLYFLDP 357

Query: 213 TCGTGGFLTDAMNHVADCG--------------------SHHKIPPILVPHGQELEPETH 252
            CG G FL      + D                      S      +    G E +    
Sbjct: 358 ACGCGNFLIITYRELRDLEILVLQELDKLDKTGQLVTDISTIIQVDVNQFAGIEYDEFAV 417

Query: 253 AVCVAGMLIRRLESDPRRDL-------------SKNIQQGSTLSKDLFT---GKRFHYCL 296
            V    M +   + + +                S  I  G+ L  D       ++ ++ L
Sbjct: 418 RVAEVAMWLIDHQMNIKVSNTFGQYFVRLPLKKSAKIVHGNALRIDWEELISKEKLNFIL 477

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            NPPF      + +           G  G G+
Sbjct: 478 GNPPFVGAMIMNDEQRNDMA-YVFDGEKGIGV 508


>gi|167628052|ref|YP_001678552.1| hypothetical protein Fphi_1824 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167598053|gb|ABZ88051.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 892

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 34/154 (22%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADC---------------GSHHKIPPILVPHGQELEPETH 252
            ++DP CG+G FL  A   + +                        +   +G E++   H
Sbjct: 342 KVFDPACGSGNFLIIAYKKLRELEIAILQRIDALSSQQNMDFSQIRLDNFYGIEIDDFAH 401

Query: 253 AVCVAGMLIRRLESDPRRDLSK-------------NIQQGSTLSKDL-----FTGKRFHY 294
            V +  M +   + + +   +              NI  G+    D             Y
Sbjct: 402 EVAILSMWLVEHQMNLKFYEAFGRTSPTLPLKAGGNIVAGNATRLDWEKVCPKNNGDEIY 461

Query: 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
            L NPPF  K ++  ++ + E K+      G GL
Sbjct: 462 LLGNPPFYGK-KEQSNSQKIEIKSLFNNISGYGL 494


>gi|330838576|ref|YP_004413156.1| N-6 DNA methylase [Selenomonas sputigena ATCC 35185]
 gi|329746340|gb|AEB99696.1| N-6 DNA methylase [Selenomonas sputigena ATCC 35185]
          Length = 1191

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 70/201 (34%), Gaps = 27/201 (13%)

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317
            +L R    +  R +   IQQ    S      +++   ++NPP+           E   K
Sbjct: 463 NLLFRAWIDEVERRILPLIQQAKVFS------QKYDVIVTNPPYLGSTRFSFKLNEYVKK 516

Query: 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEI 377
                         SD SM+ L      L+      G  A V ++S +    + S   ++
Sbjct: 517 YFPNE--------KSDLSMVMLKK---SLQETAKTNGYVAFVTTASWM----SLSSFEKL 561

Query: 378 RRWLLENDLIEAIVALPTDLFFRTNIATYL--WILSNRKTEERRGKVQLIN--ATDLWTS 433
           R ++ ++  I+ +V   T+LF        +  W++   K   R   V+L++   +     
Sbjct: 562 RSYMYKDCAIDTLVDCGTELFEGKVGHNSIVSWVVRKTKFNYRMTAVRLVDYCYSRRDEK 621

Query: 434 IRNEGKKRRII--NDDQRRQI 452
                 K+       +   +I
Sbjct: 622 EVEFFNKKNYFVATQENFSKI 642


>gi|121593951|ref|YP_985847.1| helicase domain-containing protein [Acidovorax sp. JS42]
 gi|120606031|gb|ABM41771.1| helicase domain protein [Acidovorax sp. JS42]
          Length = 1642

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 65/256 (25%), Gaps = 55/256 (21%)

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
            + S  +       T   V+      +        +        + +P  G G FL    
Sbjct: 134 DYASARASVNNSHYTEVHVIEAMWQAV--------ERFGFTGGRVLEPAAGVGHFLGAMP 185

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
             +A+                E++  +  +  A       +                  K
Sbjct: 186 RTLAE---------RSAVTAIEIDQISGRLLQALYAPHGADVRIAP-----------FEK 225

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
                  F   + N PFG       +    +  +    RF     +I +           
Sbjct: 226 VALPENWFDLVIGNVPFG-------NYPVADASHKPYARF-----RIHNY------FFGR 267

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR---T 401
            L+L   GG    I  + +      A  G    +  LL        + LP   F     T
Sbjct: 268 ALDLVRPGGLVCFITSTGTMEARDDAVRGHVSSQAELL------GAIRLPKGAFAGIAST 321

Query: 402 NIATYLWILSNRKTEE 417
            + T +  L  R + E
Sbjct: 322 EVQTDILFLRKRHSGE 337


>gi|332075661|gb|EGI86129.1| N-6 DNA Methylase family protein [Streptococcus pneumoniae GA17545]
          Length = 2097

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 75/257 (29%), Gaps = 59/257 (22%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G F+ +  + +         
Sbjct: 1176 FYTPKTVI--------DGIYKTLSDMGFKQGNILEPSMGIGNFIGNIPDKM--------- 1218

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 1219 -NKSKFYGIELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDAVI 1264

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1265 GNIPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1304

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1305 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1359

Query: 414  KTEERRGKVQLINATDL 430
             +   R +  +  A D 
Sbjct: 1360 DSIRERDEDWIHLAEDE 1376


>gi|330807435|ref|YP_004351897.1| hypothetical protein PSEBR_a735 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375543|gb|AEA66893.1| Hypothetical protein PSEBR_a735 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 1268

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 68/240 (28%), Gaps = 60/240 (25%)

Query: 38  FTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTR 97
           FT+L RL   L            A G     +    +  GY  Y       S +      
Sbjct: 94  FTVLNRLAALL---------MMEARGQLIESVSKGYQSRGYQLY-------SKIAGNALG 137

Query: 98  NNLESY----IASFSDNAKAIFEDFDFSSTIARL-EKAGLLYKICKNFSGIELHPDTVPD 152
              ++Y     + F +  + +   FD  +    L  +   L  +    +  E+ P    D
Sbjct: 138 ETGQAYQVYLFSVFDELTQELPALFDRYAANGLLFPRETALRAVLGELNHFEIEPLWAED 197

Query: 153 RVMSNIYEHLIRRFGSEVSEGAED-------------FMTPRDVVHLATA---------- 189
             +  IY++   +   +    A               F TPR VV               
Sbjct: 198 ETIGWIYQYFNSKEERKAMRDASQAPRNSRELAVRNQFFTPRYVVEFLVDNTLGRLWFNA 257

Query: 190 -------------LLLDPDD---ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233
                        LL+ PD+   A  K        L DP CG+  F   A +   +    
Sbjct: 258 TGGQTELRDRCQYLLVKPDEQPQASSKVRDPRTLKLLDPACGSMHFGLYAFDLFLEIYRE 317


>gi|237751702|ref|ZP_04582182.1| type IIS restriction-modification protein [Helicobacter bilis ATCC
           43879]
 gi|229373068|gb|EEO23459.1| type IIS restriction-modification protein [Helicobacter bilis ATCC
           43879]
          Length = 1196

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 55/194 (28%), Gaps = 15/194 (7%)

Query: 107 FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE----LHPDTVPDRVMSNIYEHL 162
           F+   K I +    +    +L  A +L  + +  +G +      P  +   +     E +
Sbjct: 312 FTTTPKDIIDHIKTNH--DKLINAAVLGLVFEKLNGYKEGSFYTPSFITSYMCKESLEKV 369

Query: 163 -IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I +F       + +  +   +      L    D      +      + DP  G+G FL 
Sbjct: 370 VIEKFNE---RKSWECDSLESLAQKLDKLTDSKDGYKEANAIFDSIKVCDPAVGSGHFLV 426

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +N + +     KI   +               +  + +R    +     S N     T
Sbjct: 427 SMLNAMIELKFRLKILCEIHIDDNGERDYKR---LKDIRLRLENDEILIQDSNNTLH--T 481

Query: 282 LSKDLFTGKRFHYC 295
                      H  
Sbjct: 482 YQTPAHENLESHII 495


>gi|68063827|ref|XP_673909.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|68072333|ref|XP_678080.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56492100|emb|CAI02471.1| conserved hypothetical protein [Plasmodium berghei]
 gi|56498430|emb|CAH98049.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 272

 Score = 39.2 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 29/125 (23%), Gaps = 8/125 (6%)

Query: 36  LPFTLLRRLECALEPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGS 93
           L    L+++       +S   EK  +          E+  +      YN S      L +
Sbjct: 108 LVLVFLKKISDTYLEDQSKWMEKMKSSQEEQGKALEEAMYEYEKNILYNHSIKEQQLLQN 167

Query: 94  TNTRNNLESYIASFSDNAKAIFEDF---DFSSTIARLEKAGLL---YKICKNFSGIELHP 147
               +     I +  +  + +   F             K   L       +       + 
Sbjct: 168 NKKLDEWNECIENAYEVQQEVLRQFEAKKIEKANQVANKNNELLIAQNYIEKIKEAATNK 227

Query: 148 DTVPD 152
                
Sbjct: 228 KQDSS 232


>gi|213966008|ref|ZP_03394198.1| hypothetical protein CORAM0001_1922 [Corynebacterium amycolatum
           SK46]
 gi|213951422|gb|EEB62814.1| hypothetical protein CORAM0001_1922 [Corynebacterium amycolatum
           SK46]
          Length = 1520

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 50/148 (33%), Gaps = 26/148 (17%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG---MIRTLYDPTCGTG 217
             + R  S   E +  F +P  +        ++   A  +       +  ++ +P  G+G
Sbjct: 505 DFVFRQSSRDRERSASFYSPPVITEFVVGQAIEELKAAHRIDTADDILTLSICEPAMGSG 564

Query: 218 GFLTDAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVC 255
            F  +A+N +A+   + K                         +   +G +L      + 
Sbjct: 565 AFAVEAVNQLAELYLNKKQEELGQKIEPERLTEELQKVKASIALHQVYGVDLNKTAVELA 624

Query: 256 VAGMLIRRLESDPRR-DLSKNIQQGSTL 282
              + +  + ++ +      +++ G++L
Sbjct: 625 EISLWLDTMSAELKAPWFGLHLRHGNSL 652


>gi|167754264|ref|ZP_02426391.1| hypothetical protein ALIPUT_02557 [Alistipes putredinis DSM 17216]
 gi|167658889|gb|EDS03019.1| hypothetical protein ALIPUT_02557 [Alistipes putredinis DSM 17216]
          Length = 273

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 26/139 (18%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
               +++  L         +    F TP  +  L + + +   ++  K     I ++ DP
Sbjct: 92  DAFGDLFMAL---TSQSGQQQKGQFFTPAHITDLMSKITMGKQESDAK-----ILSVCDP 143

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL 272
           T G+G  L  A              P       +++     +CV   LI     +     
Sbjct: 144 TAGSGRTLLAAKA----------DRPQSYLVAWDIDYTCCLMCVCNFLINGCVGE----- 188

Query: 273 SKNIQQGSTLSKDLFTGKR 291
              +    +L  D F G  
Sbjct: 189 ---VVCIDSLRMDNFRGAW 204


>gi|157953202|ref|YP_001498093.1| hypothetical protein AR158_C011L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156067850|gb|ABU43557.1| hypothetical protein AR158_C011L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 373

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 59/259 (22%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++  +E  + +   E       F TP+ V       + +P              + +P+
Sbjct: 10  QITKDFEKTLDK---EKKSKQGIFFTPKSVREKLFGYVDEPK------------NILEPS 54

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CGTG  ++D            +  P     G EL+ + + VC                 +
Sbjct: 55  CGTGEIISDC----------IERFPSANITGVELDKDIYDVCK----------RSYTREN 94

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            NI     L    + G +F + + NPPF  + +  K+           GR          
Sbjct: 95  VNIINDDFL---AWKGGKFDFIVGNPPFVVRPKGHKND-----DRIVRGR---------- 136

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
            S L++  L   +       G  A ++                IR+ ++  D++   + L
Sbjct: 137 -SNLYVEFLFKCITEHLKEDGILAFIIP----STIGNSKFYEPIRKLIITLDILSFEI-L 190

Query: 394 PTDLFFRTNIATYLWILSN 412
               F  TN      ++ N
Sbjct: 191 DKHEFCDTNTRLCSIVIKN 209


>gi|229817502|ref|ZP_04447784.1| hypothetical protein BIFANG_02765 [Bifidobacterium angulatum DSM
           20098]
 gi|229785291|gb|EEP21405.1| hypothetical protein BIFANG_02765 [Bifidobacterium angulatum DSM
           20098]
          Length = 627

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 15/130 (11%)

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------ILVPHGQ 245
            ++ +         T+ DP CG+G  LT A + + +        P            +G 
Sbjct: 300 GNEDILAIRTPEDLTVCDPACGSGHMLTYAFDLLYEIYEEEGYAPSDIPSLILKHNLYGM 359

Query: 246 ELEPETHAVCVAGMLIRRLESD---PRRDLSKNIQQG--STLSKD--LFTGKRFHYCLSN 298
           E++    ++    + ++         ++ +  NIQ+    T  +D        +   L +
Sbjct: 360 EIDERAASLAAFALTMKARSRSRRFFKKQVEPNIQRIAPITFKEDDVAELNDLYQVNLDS 419

Query: 299 PPFGKKWEKD 308
             +    + D
Sbjct: 420 MVWNTYAKAD 429


>gi|296126775|ref|YP_003634027.1| DNA methyltransferase [Brachyspira murdochii DSM 12563]
 gi|296018591|gb|ADG71828.1| DNA methyltransferase [Brachyspira murdochii DSM 12563]
          Length = 909

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 73/275 (26%), Gaps = 61/275 (22%)

Query: 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTP-RDVVHLATALLLDPDDALFK------ 200
             +   +  ++++ +  +   E      +  T  ++++   +AL LD     F+      
Sbjct: 284 SNISPAIFGSLFQCVADK---EKRRSFGEHYTSEKNIMKTISALFLDELREEFEKVKTNK 340

Query: 201 ------ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------------- 237
                           DP CG G FL  A   + +                         
Sbjct: 341 NKLKEFHQKISKLKFLDPACGCGNFLIIAYREIRELEIDILTELYKEDLKDGVLSIDISN 400

Query: 238 ----PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-------------IQQGS 280
                +   +G E+      +    + +     + +  +                I+  +
Sbjct: 401 LSLIDVDNFYGIEINEFPAKIAEVALWLMDHLMNLKLSIKFGRAFERIPLKKSAVIKNEN 460

Query: 281 TLSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
            L  D       K   Y L NPPF            +E K       G G        + 
Sbjct: 461 ALIIDWKNIIDVKELSYILGNPPF-VGARMKSKEQSEEMKKVFNNMKGYG-------DLD 512

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGS 372
           ++     K      G    A  +S++ +  G   S
Sbjct: 513 YVSAWYKKSAELIKGTKIKAAFVSTNSITQGTQVS 547


>gi|254372239|ref|ZP_04987730.1| predicted protein [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151569968|gb|EDN35622.1| predicted protein [Francisella novicida GA99-3549]
          Length = 1112

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 72/244 (29%), Gaps = 68/244 (27%)

Query: 103 YIAS--FSDNAKAI--------FEDFDFSSTIAR---LEKAGLLYKICKNFSGIELHPDT 149
           Y+    F+ + + I         ED  F   + +   L+    L+    NF+ IE  P+ 
Sbjct: 301 YLNGGLFTKDERDIELEKNKIRIEDGLFEDLLRKEDNLQGKKGLFSSY-NFTIIEDSPED 359

Query: 150 ----VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT----------------- 188
               +   ++  ++E L+     E  +    F TPR++VH                    
Sbjct: 360 VDIAIDPEMLGKVFEDLL-----EDRKEKGAFYTPREIVHYMCQQSLINYLKGKFVSEED 414

Query: 189 -----ALLLDPDDALFKESPGMIR---------TLYDPTCGTGGFLTDAMNHVADCGSHH 234
                 L+L              +          + DP  G+G F    ++ +       
Sbjct: 415 EQDIKDLVLYKKTDNNTLVNKRAKEVKQALHEIKVLDPAIGSGAFPMGMLHEIVSALHSI 474

Query: 235 KIPPI----------LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGS 280
                             +G ++E     +      +  +    + +   N    I  G+
Sbjct: 475 DKSTNIAELKKQVIQNSIYGVDIEESAVEIAKLRFWLSIVVDSDKPEPLPNLFYKIMVGN 534

Query: 281 TLSK 284
           +L +
Sbjct: 535 SLLE 538


>gi|298528753|ref|ZP_07016157.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298512405|gb|EFI36307.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 1628

 Score = 39.2 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 56/201 (27%), Gaps = 28/201 (13%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      + +  + TP  +        L       K    +  T+ +P  G+  FL 
Sbjct: 562 FIYRMSGRDRQQSASYYTPESLTQCLVKYSLQELLQGKKADDILELTICEPAMGSAAFLN 621

Query: 222 DAMNHVADCGSHHKIP----------------------PILVPHGQELEPETHAVCVAGM 259
           +A+N +A      K                              G +L P    +    +
Sbjct: 622 EAVNQLAQAYLDRKQNELDTRLSVEELAREKQKVKTYLADNNVFGVDLNPVAVELAEVSL 681

Query: 260 LIRRLESDPRRDLSKN-IQQGSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKE 315
            +  + +        N +  G++L    +D+F          + P       ++      
Sbjct: 682 WLNTIYAGGYVPWFGNQLVCGNSLVGARRDVFQPNLLRKKSKSDPLWLDSVPERIQPGAR 741

Query: 316 HKNGELGRFGPGLPKISDGSM 336
              G +  +   LP  +  + 
Sbjct: 742 RPRGTV--YHFLLPDKNMAAY 760


>gi|332974669|gb|EGK11586.1| type II restriction modification enzyme methyltransferase [Kingella
           kingae ATCC 23330]
          Length = 311

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 13/97 (13%)

Query: 138 KNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
             F  I+     +   +M  +Y   + ++     +     +TP  V  +   +L      
Sbjct: 212 NIFKSIDGFGGHID--IMGEMYSEFL-KYALGDGKEIGIVLTPPYVTKMMAQMLNI---- 264

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234
                      + D   G+ GFL  AM  +     + 
Sbjct: 265 ------KANNKVMDLATGSAGFLISAMELMIQDAENQ 295


>gi|311741945|ref|ZP_07715755.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311314438|gb|EFQ84345.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 547

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 68/214 (31%), Gaps = 37/214 (17%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP  +        +           G    + +P+CG   FL  +++ +   G
Sbjct: 15  KARGAFFTPPAIADFVVEWAVR----------GAGERVLEPSCGEAAFLERSVHRLRSLG 64

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
           +           G ++   +                       +I +G   +        
Sbjct: 65  AE-----SPTVSGVDIHAASVREAA--------RIVTESGGKPDILEGDFFTVP--PEPI 109

Query: 292 FHYCLSNPPFGKKWE-KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +   + NPPF +  +   +  +       E G    GL         F +H A  L++  
Sbjct: 110 YDAVVGNPPFIRYHDFSGEARLRSRQAALEAGVSISGLASSWAA---FTVHAALFLKV-- 164

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
             GGR  +V+ +  L    A      +RR+LL++
Sbjct: 165 --GGRMGLVVPAELLSVNYAAH----VRRFLLQS 192


>gi|224282962|ref|ZP_03646284.1| hypothetical protein BbifN4_03955 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140120|ref|ZP_07802313.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313132630|gb|EFR50247.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 1195

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP--------ILVPHGQ 245
            ++ +         T+ DP CG+G  LT A + + +        P            +G 
Sbjct: 300 ENEDILNIQTPEELTVCDPACGSGHMLTYAFDLLYEIYEEEGYAPSDIPGLILKHNLYGM 359

Query: 246 ELEPETHAVCVAGMLIR 262
           E++    ++    + ++
Sbjct: 360 EIDERAASLAAFALTMK 376


>gi|40643170|emb|CAE14722.1| unnamed protein product [Leptospira phage LE1]
          Length = 927

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 75/300 (25%), Gaps = 71/300 (23%)

Query: 68  DLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFS-------DNAKAIFEDFD- 119
           D         + F+       + L  ++    +  +    +        N       F  
Sbjct: 198 DDTGIFNKDDFLFFLKER---TKLDGSDLGLWIAQFFQVLNTPTEQRQANLDEDLAKFPY 254

Query: 120 -----FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA 174
                F   I   +    L  I             V   +  +++++++ +         
Sbjct: 255 VNGQLFEEAIPFAQFDQKLRDILIQACEFNWAL--VSPAIFGSLFQYVMSK---VERREL 309

Query: 175 EDFMTP-RDVVHLATALLLDPDDALFKESPGMI--------------RTLYDPTCGTGGF 219
               T  ++++     L LD     FK                      + DP CG G F
Sbjct: 310 GAHYTSEKNILKTIHGLFLDEHLEEFKSLNLKKNIKGLEDLLARIRKIKILDPACGCGNF 369

Query: 220 LTDAMNHVADCGSHHKIPPI-------------------LVPHGQELEPETHAVCVAGML 260
           L  +   +     +                            +G E+E     +    + 
Sbjct: 370 LILSYRELRRLEINLLKEIRKLKGLGLELSIQTLDSLDVDHLYGIEIEEFPAQIAKTAIW 429

Query: 261 I--RRLESDPRRD-----------LSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKK 304
           I    +  +  ++            +  I  G+ L    +++       Y L NPPF   
Sbjct: 430 IMDHLMNVEMGKEFGEYYVRLPLKKAPTIVIGNALRLKWEEIIKPDELTYILGNPPFAGS 489


>gi|317180649|dbj|BAJ58435.1| Type II adenine specific methyltransferase [Helicobacter pylori
           F32]
          Length = 545

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 86  ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNKIVE---QLFTLPKDFDTSQA---- 135

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 136 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 180

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++    +  K         
Sbjct: 181 RYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN----- 229

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 230 -LSQSLDSASLFFIASLNCLKENAHLG 255


>gi|326484583|gb|EGE08593.1| tRNA guanosine-2'-O-methyltransferase TRM11 [Trichophyton equinum
           CBS 127.97]
          Length = 454

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 87/264 (32%), Gaps = 35/264 (13%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI- 143
            + + T  ST T       I SFS  A        F   I ++  A   + + + F+   
Sbjct: 100 RFDVDTYASTRTAKERNEIIESFSFLA--------FEGPI-KMVDADEKFCVFEEFAHQL 150

Query: 144 --ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT--PRDVVHLATALLLDPDDALF 199
               +P T  + V+  IY   + R+ +E      +      R  +   +        +  
Sbjct: 151 ASSGNPKTHTEPVLKRIY---LGRWVTEGGRTEINTYNLKKRKYISTTSMDAELSLISAN 207

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                  +  YDP  GTG FL  A +  A                     +T        
Sbjct: 208 MTHAAPGKLFYDPFVGTGSFLVAAAHFGAVTCGSDIDGRSFRGKEATSHIDT-------- 259

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               + S+ ++    + +   T + DL      + + F   + +PP+G +        + 
Sbjct: 260 ---GVISNFKQYGLLS-RFLDTFTSDLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKD 315

Query: 315 EHKNGELGRFGPGLPKISDGSMLF 338
           + + GEL  F  G+P     + +F
Sbjct: 316 DSRKGELMMFQ-GVPSYKRENYIF 338


>gi|310640654|ref|YP_003945412.1| methyltransferase [Paenibacillus polymyxa SC2]
 gi|309245604|gb|ADO55171.1| Methyltransferase [Paenibacillus polymyxa SC2]
          Length = 328

 Score = 39.2 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 25/123 (20%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  V      L    +D    +       L DP CG G  + +A+               
Sbjct: 169 PVLVARALVNLAA--NDQFASKGKSDSLKLLDPCCGMGNVMIEAL------------SMD 214

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G ++ P         +     E D  +    N+  G            +   + + 
Sbjct: 215 KNIRGCDINPLAVRGARVNLRHYGYEEDLVKLGDMNMLAG-----------TYDAAILDM 263

Query: 300 PFG 302
           P+ 
Sbjct: 264 PYN 266


>gi|293378951|ref|ZP_06625106.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
 gi|292642492|gb|EFF60647.1| conserved hypothetical protein [Enterococcus faecium PC4.1]
          Length = 248

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +  TP+ +V     +       + +    +  T  +P  G G FL   +    +  
Sbjct: 13  QKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAFLVAILERKLNMV 67

Query: 232 SHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           S      ++             +G EL  +   +CV  M  +  ++   +    N
Sbjct: 68  SKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYKEQVEHHN 122


>gi|330990113|ref|ZP_08314093.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
 gi|329762801|gb|EGG79265.1| Modification methylase TaqI [Gluconacetobacter sp. SXCC-1]
          Length = 1696

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 68/249 (27%), Gaps = 58/249 (23%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP  +V     +++                + +P CGTG F+      +        
Sbjct: 149 AHYTPELMVRSLWDMVM--------RMGFSGGRVLEPGCGTGLFIATRPEKLE------- 193

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +   G E +P T  +  A               ++ I+Q          G+R+   
Sbjct: 194 --GRVAFTGIENDPLTARIARA------------LYPNQWIRQED--FTKTLPGERYELA 237

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPPF  +  +  D + +   +                   F+      L      GG 
Sbjct: 238 IGNPPFSSRTVRGADTIGRLRLSLHDH---------------FIARSVEALRP----GGI 278

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSN 412
           A  V S   L            R  +     +   V LP         T +   + +L  
Sbjct: 279 AVFVTSRHTLDRRD-----GTARTHIAAMADLLGAVRLPQGAMKDEAGTEVVVDIVVLRR 333

Query: 413 RKTEERRGK 421
           R   +  G 
Sbjct: 334 RMVGDVPGD 342


>gi|302186858|ref|ZP_07263531.1| type II restriction enzyme, methylase subunit [Pseudomonas syringae
           pv. syringae 642]
          Length = 728

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 7/118 (5%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I R      E +  + TP  +        L       K    +  T+ +P  G+  FL 
Sbjct: 555 FIYRLAGRAREKSASYYTPEVLTKCLVEHALKEILPGKKADEILNLTVCEPAMGSAAFLN 614

Query: 222 D-----AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
           +     A  ++               + +E +     +  +   +  ++ +P      
Sbjct: 615 EAVSQLAEAYLQAKQKELGRTIPHEQYTEEKQRVKMFIADSN--VFGVDLNPIAVELA 670


>gi|146319984|ref|YP_001199695.1| adenine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|253751046|ref|YP_003024187.1| hypothetical protein SSUSC84_0128 [Streptococcus suis SC84]
 gi|253752947|ref|YP_003026087.1| hypothetical protein SSU0133 [Streptococcus suis P1/7]
 gi|253754770|ref|YP_003027910.1| hypothetical protein SSUBM407_0130 [Streptococcus suis BM407]
 gi|145690790|gb|ABP91295.1| Adenine-specific DNA methylase [Streptococcus suis 98HAH33]
 gi|251815335|emb|CAZ50906.1| conserved hypothetical protein [Streptococcus suis SC84]
 gi|251817234|emb|CAZ54962.1| conserved hypothetical protein [Streptococcus suis BM407]
 gi|251819192|emb|CAR44368.1| conserved hypothetical protein [Streptococcus suis P1/7]
 gi|292557591|gb|ADE30592.1| Adenine-specific DNA methylase [Streptococcus suis GZ1]
 gi|319757300|gb|ADV69242.1| adenine-specific DNA methylase [Streptococcus suis JS14]
          Length = 317

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 93/294 (31%), Gaps = 48/294 (16%)

Query: 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
             Y+ L+ +             TP  +  + + L+        +  P    T+ +   GT
Sbjct: 68  RAYQFLLIKANQTEPMQYNHQFTPDSIGFILSFLV-------DQLVPTQKVTVLEIGSGT 120

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G                       + +  + E +   + V  +LI  L +     +  +I
Sbjct: 121 GNL------------------AQTILNASQKELDYLGIEVDDLLI-DLSASIADVMQADI 161

Query: 277 --QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334
              QG  +       K     L + P G               +    R+    PK    
Sbjct: 162 SFAQGDAVRP--QILKESQVILGDLPIGYYP-----------DDQIASRYQVASPKEH-- 206

Query: 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALP 394
           +    + +   L+     G   AI+L+ + L           ++ WL E   I A++ALP
Sbjct: 207 TYAHHLLMEQSLKYLEKDGF--AILLAPNDLLTSPQS---DLLKGWLQEQANIVAMIALP 261

Query: 395 TDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
            +LF +T +A  +++L  +        V  + +     +I+      +    + 
Sbjct: 262 PNLFGKTAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQEN 315


>gi|89100073|ref|ZP_01172942.1| Adenine-specific methyltransferase [Bacillus sp. NRRL B-14911]
 gi|89085163|gb|EAR64295.1| Adenine-specific methyltransferase [Bacillus sp. NRRL B-14911]
          Length = 311

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 105/312 (33%), Gaps = 50/312 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +Y+ + ++    IF++      ++ L     L K  ++ +      D      +   ++ 
Sbjct: 10  TYLEALAETGDNIFQESILQDGLSEL-NVKRLKKSYESLN-----LDLYTSENIRKSFQL 63

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I +   E +      MTP  V  L   L+        K        L DP  GTG  LT
Sbjct: 64  AILKGMKE-NVQPNHQMTPDAVGMLTGYLV-------NKFVGAKSFRLLDPAVGTGNLLT 115

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             +        + +    +   G +++     +      +        +          +
Sbjct: 116 TVI--------NQQEGKSIEAVGSDVDDLLIKLAYINANL--------QKHPIQFYNQDS 159

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L + LF  +     +S+ P G  +  D  A + E K  E           S    LFL  
Sbjct: 160 L-EPLFI-ESVDAVISDLPVGY-YPNDIRAQDYELKADEGH---------SYAHHLFLEQ 207

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
               +     GG    IV +   LF         +++ ++ +  +I+ ++ LP  LF   
Sbjct: 208 ---SMRHVKEGGYLFLIVPNG--LFESEQA---DKLKAYISKTSIIQGLLQLPETLFKNK 259

Query: 402 NIATYLWILSNR 413
           N A  ++IL  +
Sbjct: 260 NAAKSVFILQKK 271


>gi|327405756|ref|YP_004346594.1| hypothetical protein Fluta_3789 [Fluviicola taffensis DSM 16823]
 gi|327321264|gb|AEA45756.1| hypothetical protein Fluta_3789 [Fluviicola taffensis DSM 16823]
          Length = 900

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 97/325 (29%), Gaps = 63/325 (19%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRN 98
             L RL        + + +    F  +     +      + F N     L    +T   +
Sbjct: 175 IFLSRLLFCFFAEDTEIFKDKSIFTDTLAQHTAESGKDTHLFLN----DLFDRLNTENAD 230

Query: 99  NLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNI 158
           +L  Y+  F      +F     +S I   +    L ++       +L+   +   +  ++
Sbjct: 231 HLPEYLRKFEYVNGGLFGQ-KIASPIFTSKARKTLIEL------GDLNWSEINPDIFGSM 283

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIR---------- 207
            + ++ +   +         T  + ++ L   L LD     ++ +  + +          
Sbjct: 284 IQAVVDK---DYRSDLGMHYTSVENILKLIKPLFLDELYDAYENATTINQLRALIKRISK 340

Query: 208 -TLYDPTCGTGGFLTDAMNHVADCGSHHKIP----------------PILVPHGQELEPE 250
              +DP CG+G FL      +                           +   +G E++  
Sbjct: 341 IKFFDPACGSGNFLIITYKEIRLLEIKILEKITDLEGQSPTIKWTEIQLSQFYGIEIDDF 400

Query: 251 THAVCVAGMLIRRLESDPRRD----------------LSKNIQQGSTLSKDLFT-----G 289
            H + +  + +   + +   +                 +  I+QG+   +D         
Sbjct: 401 AHEMAILSLWLAEHQMNKVFEERLFDYGKSKPILPLKEAGQIKQGNATRRDWNEVCPISS 460

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEK 314
               Y + NPP+     +D+   E 
Sbjct: 461 TDEVYVIGNPPYLGYSRQDETQKED 485


>gi|291276949|ref|YP_003516721.1| restriction /modification enzyme [Helicobacter mustelae 12198]
 gi|290964143|emb|CBG39988.1| possible restriction /modification enzyme [Helicobacter mustelae
           12198]
          Length = 1286

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 9/115 (7%)

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE 201
             +             IY     +  S   +    F TP  +        L        +
Sbjct: 448 QKDCKIHRTEQYKKGQIYL----KNTSNSRKSTASFYTPESITKFLVQSAL---KDRLND 500

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH--KIPPILVPHGQELEPETHAV 254
           S  +   + D  CG+G FL  A+  +           P +   + QE +     +
Sbjct: 501 SNILHFKILDNACGSGHFLITALQAITSIIQEDFESFPALKNLYEQEKQSVQKNI 555


>gi|225868848|ref|YP_002744796.1| helicase [Streptococcus equi subsp. zooepidemicus]
 gi|225702124|emb|CAW99793.1| putative helicase [Streptococcus equi subsp. zooepidemicus]
          Length = 2916

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 59/257 (22%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G F+ +  + +         
Sbjct: 1179 FYTPKTVI--------DGVYKTLSDMGFKQGNILEPSMGIGNFIGNLPDEMRRSK----- 1225

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+      +  F+   F   +
Sbjct: 1226 -----FYGVELDSISGRIGKL----------LYPESDIQIKG---FEETTFSNNFFDAVI 1267

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++         +                        K       GG  
Sbjct: 1268 GNVPFGEYKVNDREYNRNNFLIHDY--------------------FFAKSIDKVRNGGVI 1307

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1308 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGTAGTEVTSDIIFLKKR 1362

Query: 414  KTEERRGKVQLINATDL 430
             +   R +  +  A D 
Sbjct: 1363 DSVLERDEDWIHLAEDE 1379


>gi|157952320|ref|YP_001497212.1| hypothetical protein NY2A_B016L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|2454654|gb|AAC03124.1| DNA adenine methyltransferase [Paramecium bursaria Chlorella virus
           NY2A]
 gi|155122547|gb|ABT14415.1| hypothetical protein NY2A_B016L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 368

 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 78/246 (31%), Gaps = 56/246 (22%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH 226
             E       F TP+ V       ++DP              + +P+CGTG  ++D ++ 
Sbjct: 15  SKEKKSKQGIFFTPKSVREKLFGYVVDPK------------NILEPSCGTGEIISDCIDR 62

Query: 227 VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286
                      P     G EL+ + + VC                 +  I     L    
Sbjct: 63  ----------FPSANITGVELDEDIYDVCK----------RTYTRENVTIINDDFL---A 99

Query: 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346
           + G++F + + NPPF  + +  K+           GR           S L++  L   +
Sbjct: 100 WKGEKFDFIVGNPPFVVRPKGHKND-----DRIVRGR-----------SNLYVEFLFKCI 143

Query: 347 ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406
                  G  A ++                IR+ ++  D++   + L    F  TN    
Sbjct: 144 TEHLKEDGILAFIIP----STIGNSKFYEPIRKLIITLDILSFEI-LDKHEFCDTNTRLC 198

Query: 407 LWILSN 412
             ++ N
Sbjct: 199 SIVIKN 204


>gi|157130331|ref|XP_001655665.1| hypothetical protein AaeL_AAEL011749 [Aedes aegypti]
 gi|108871917|gb|EAT36142.1| conserved hypothetical protein [Aedes aegypti]
          Length = 305

 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 49/176 (27%), Gaps = 25/176 (14%)

Query: 159 YEHLIR--RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGT 216
           +E  ++            E ++TP  +       +    D L        + + D  CG 
Sbjct: 103 FEEFLQTVDGFENPKVTLEQYITPSHIASHMLYTIQTNYDDL------ENKLVLDLGCGA 156

Query: 217 GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI 276
           G     A            +       G E++ +   +      I   E D        I
Sbjct: 157 GMLSVGAA-----------LLGAAHVVGVEIDADAIEIFKGN--IEGFELDNVDC----I 199

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332
           Q      +D+    +F   L NPPFG K     D            R    L K S
Sbjct: 200 QWDVLGMEDIDFEHKFDTVLMNPPFGTKQNSGIDMKFLRIGLALADRSVYSLHKTS 255


>gi|302663036|ref|XP_003023166.1| hypothetical protein TRV_02688 [Trichophyton verrucosum HKI 0517]
 gi|291187148|gb|EFE42548.1| hypothetical protein TRV_02688 [Trichophyton verrucosum HKI 0517]
          Length = 332

 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 28/229 (12%)

Query: 113 AIFEDFDFSSTIA--RLEKAGLLYKICKNFSGI---ELHPDTVPDRVMSNIYEHLIRRFG 167
            I E F F +     ++  A   + + + F+       +P T  + V+  IY   + R+ 
Sbjct: 117 EIIESFSFLAFEGPIKMVDADEKFCVFEEFAHQLASSGNPKTHTEPVLKRIY---LGRWV 173

Query: 168 SEVSEGAEDFMT--PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMN 225
           +E      +      R  +   +        +         +  YDP  GTG FL  A +
Sbjct: 174 TEGGRTEINTYNLKKRKYISTTSMDAELSLISANMTHAAPGKLFYDPFVGTGSFLVAAAH 233

Query: 226 HVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285
             A                     ET  +         L S          +   T + D
Sbjct: 234 FGAVTCGSDIDGRSFRGKEATSNTETGVIA--NFKQYGLLS----------RFLDTFTSD 281

Query: 286 LF-----TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           L      + + F   + +PP+G +        + + + GEL  F  G+P
Sbjct: 282 LTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKDDSRKGELMMFQ-GVP 329


>gi|77460845|ref|YP_350352.1| hypothetical protein Pfl01_4624 [Pseudomonas fluorescens Pf0-1]
 gi|77384848|gb|ABA76361.1| putative N-6 Adenine-specific DNA methylase protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 448

 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 19/143 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
             +  F T   +   A      P +            + DPTCG+G  L  A   ++   
Sbjct: 69  RESGVFFTSDALAEKAINSFNSPINDRAL--------VVDPTCGSGSLLVAASRKLSVMP 120

Query: 232 SHHKIPPIL--VPHGQELEPETHAVCVAGMLIRRL--------ESDPRRDLSKNIQQGST 281
              +          G ++ PE        +++  L              +L  NI  G  
Sbjct: 121 LASETLKKWGKQLCGIDIFPEFVYCTKLRLVLESLVRGAIADKNLSELLNLLTNIHSGDC 180

Query: 282 LSKDLFTGKRFHYCLSNPPFGKK 304
           L       K  H  L NPP+   
Sbjct: 181 LDNTAIIAKATHLAL-NPPYNNS 202


>gi|326475662|gb|EGD99671.1| RNA methylase [Trichophyton tonsurans CBS 112818]
          Length = 447

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 87/264 (32%), Gaps = 35/264 (13%)

Query: 85  EYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGI- 143
            + + T  ST T       I SFS  A        F   I ++  A   + + + F+   
Sbjct: 100 RFDVDTYASTRTAKERNEIIESFSFLA--------FEGPI-KMVDADEKFCVFEEFAHQL 150

Query: 144 --ELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMT--PRDVVHLATALLLDPDDALF 199
               +P T  + V+  IY   + R+ +E      +      R  +   +        +  
Sbjct: 151 ASSGNPKTHTEPVLKRIY---LGRWVTEGGRTEINTYNLKKRKYISTTSMDAELSLISAN 207

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259
                  +  YDP  GTG FL  A +  A                     +T        
Sbjct: 208 MTHAAPGKLFYDPFVGTGSFLVAAAHFGAVTCGSDIDGRSFRGKEATSHIDT-------- 259

Query: 260 LIRRLESDPRRDLSKNIQQGSTLSKDLF-----TGKRFHYCLSNPPFGKKWEKDKDAVEK 314
               + S+ ++    + +   T + DL      + + F   + +PP+G +        + 
Sbjct: 260 ---GVISNFKQYGLLS-RFLDTFTSDLTNTPLRSTRIFDGIICDPPYGVREGLRVLGHKD 315

Query: 315 EHKNGELGRFGPGLPKISDGSMLF 338
           + + GEL  F  G+P     + +F
Sbjct: 316 DSRKGELMMFQ-GVPSYKRENYIF 338


>gi|168206971|ref|ZP_02632976.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
 gi|170661641|gb|EDT14324.1| superfamily II DNA and RNA helicase [Clostridium perfringens E str.
           JGS1987]
          Length = 1975

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 71/253 (28%), Gaps = 59/253 (23%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + S  +       TP+ V+                        + +P+ G G F +  
Sbjct: 464 EEYESARASTLNAHYTPKVVIDSIYK--------ALNRFGFREGNILEPSMGIGHFFSRL 515

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            + +               +G EL+  +  +               ++ S  I+      
Sbjct: 516 PDSM----------SNSKLYGVELDDISGRISK----------QLYQNASIEIKG---YE 552

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  F+   F   + N PFG     DKD  +      +                 F     
Sbjct: 553 ETTFSNNFFDVAIGNIPFGDYKVFDKDFNKNNFLIHDY----------------FFAKTL 596

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
           +KL+      G  A V S   +         S +R +L E       + LP + F     
Sbjct: 597 DKLKE----NGIVAFVTSKGTM-----DKANSSVREYLSERADFIGAIRLPKNTFKSSAN 647

Query: 401 TNIATYLWILSNR 413
           T + T +  L  +
Sbjct: 648 TEVTTDIIFLQKK 660


>gi|110005770|emb|CAL00075.1| hypothetical protein SPICINP17_004 [Spiroplasma citri]
          Length = 210

 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 60/257 (23%)

Query: 160 EHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219
            + I R     ++      TP ++      LL         +       ++DP  G G  
Sbjct: 1   MYRIDRNNYFDNQKKSTVYTPNELSEYLFNLL----KDKISKG-----YIFDPCVGKGSL 51

Query: 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG 279
           L                       G E              ++ ++ + +   +  ++  
Sbjct: 52  L-----------------KPWGKAGWE--------------VKGVDIENQGFKNTILKNY 80

Query: 280 STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             ++ D    K+    + NPPF    +  +     + K G    F P +           
Sbjct: 81  LEITLDNLDNKKPALIVMNPPFNIDIKTQEYIKNNKEKFGSSRPFLPEV----------- 129

Query: 340 MHLANKLELPPNGGGR-AAIVLSSSPLFNGRAGSGESEIRRWLLENDL--IEAIVALPTD 396
                 L+      G+   I++ +   F     S  +   +  ++ND   I +I++LP D
Sbjct: 130 -----WLKKVIELFGKNIPILMFTPYGFRLNPTSKSARW-KRFIKNDYPEISSIISLPKD 183

Query: 397 LFFRTNIATYLWILSNR 413
           ++      + + I +  
Sbjct: 184 IYKEVMFHSEIIIYNIN 200


>gi|255973332|ref|ZP_05423918.1| SNF2 family protein [Enterococcus faecalis T1]
 gi|255964350|gb|EET96826.1| SNF2 family protein [Enterococcus faecalis T1]
          Length = 2266

 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 69/243 (28%), Gaps = 51/243 (20%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F     + + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPSEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                          +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHDY---------------------FIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
           A       R+ L     +   V LP   F     T + T +         + + + QL+ 
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKHSGIQEQAEEQLLE 923

Query: 427 ATD 429
              
Sbjct: 924 RRQ 926


>gi|29350157|ref|NP_813660.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29342069|gb|AAO79854.1| putative DNA methylase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1320

 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 20/131 (15%)

Query: 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLM-HLAN 344
            +    F    SN PFG     D+D    E            + + S  S+  +  +   
Sbjct: 67  PYYNNYFDMVSSNIPFGNTRVYDRDFDRSED-----------VVRKS--SLAAVHNYFFL 113

Query: 345 KLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF--FRTN 402
           K     + GG  A + +S  + + +       +R WL+ +  + + + LP +LF    T 
Sbjct: 114 KGMDTLHEGGILAYITTSGVMDSPQNRP----VREWLVNHANLVSAIRLPDNLFVDAGTE 169

Query: 403 IATYLWILSNR 413
           +++ L +L   
Sbjct: 170 VSSDLIVLQKN 180


>gi|237750669|ref|ZP_04581149.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
 gi|229373759|gb|EEO24150.1| superfamily II DNA and RNA helicase [Helicobacter bilis ATCC 43879]
          Length = 2282

 Score = 38.8 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 57/404 (14%), Positives = 121/404 (29%), Gaps = 71/404 (17%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            + TP  +V     L                  + +P+ G+G FL              +
Sbjct: 146 AYYTPTPIVESMVKL-------AKDLGLNNNHVILEPSSGSGRFL-------------GQ 185

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                   G EL+P T  +         +    + D +    Q S  +KD F    +   
Sbjct: 186 FHSNANVVGIELDPFTAKLSQT------IYPYFKIDNAG--FQNSKFAKDDF----YDLV 233

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           + NPP+     +D+      H                     F+    +KL +    GG 
Sbjct: 234 IGNPPYSNFTIRDEAFSASAHNY-------------------FMKRGIDKLRV----GGI 270

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
           +  +++ S +      S    +R+ + +N      V LP + F   ++ T + +      
Sbjct: 271 SIQIVTKSFM-----DSSNDLVRKEIAKNAKFLGGVRLPNNAFKDASVTTDILVFKKVSA 325

Query: 416 EERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDI-YVSRENGKFSRMLDYRTFG 474
            E +     ++ + + T+  N     +   D+ +  + ++     + G    +++     
Sbjct: 326 AEAKK----LDNSWIETTELNGIPVSKYFVDNPQNVLGEMKVGKGQFGDIVHVINKEGID 381

Query: 475 YRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAES 534
           +    ++  L   +  D   L   + +    K          DI    M  +      + 
Sbjct: 382 FSNFDLMPYLNKKYDFDTLRLK--DNNTHSLKDLESEVKTTQDITDSQMGAVRYDKEQDK 439

Query: 535 FVKESIKSNEAKTLKVKASKSFIV----AFINAFGRKDPRADPV 574
           F+K    S++   LK       +                 A  +
Sbjct: 440 FIKNDGGSDDELDLKEYLQSLEVTWKPETIEKRIAEYKELAPKI 483


>gi|254976974|ref|ZP_05273446.1| putative helicase [Clostridium difficile QCD-66c26]
 gi|255651892|ref|ZP_05398794.1| putative helicase [Clostridium difficile QCD-37x79]
 gi|260687151|ref|YP_003218285.1| putative helicase [Clostridium difficile R20291]
 gi|260213168|emb|CBE04620.1| putative helicase [Clostridium difficile R20291]
          Length = 2909

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 73/257 (28%), Gaps = 59/257 (22%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G       N + +       
Sbjct: 1179 FYTPKTVI--------DGIYKTLSDMGFKQGNILEPSMGIG-------NFIGNIPDEMNK 1223

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 1224 SK---FYGIELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDAVI 1267

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1268 GNIPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1307

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1308 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGIAGTEVTSDIIFLKKR 1362

Query: 414  KTEERRGKVQLINATDL 430
             +   R +  +  A D 
Sbjct: 1363 DSIRERDEDWIHLAEDE 1379


>gi|225620242|ref|YP_002721499.1| hypothetical protein BHWA1_01316 [Brachyspira hyodysenteriae WA1]
 gi|225215061|gb|ACN83795.1| hypothetical protein BHWA1_01316 [Brachyspira hyodysenteriae WA1]
          Length = 438

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 17/195 (8%)

Query: 284 KDLFTGKRFHYCLSNPPFG----KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--L 337
           K++F G  F   + NPP+       W  D       + +           +    ++  L
Sbjct: 22  KNIFKGGGFDVVIGNPPYVFIKYVDWADDVKGYFSSNYDITNKDNKSKSNQSGKINLYTL 81

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F+      L+      G  + ++ +  L      +     R+++L+N  I+ I  L   +
Sbjct: 82  FIFRAIKLLKE----NGVFSFIVPNGLLRT----TTYDMARKFILDNYHIDFIADLKDGV 133

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYV 457
           F      T ++  S           ++I+A  L     NE K   +      +     + 
Sbjct: 134 FKGVTAPTIIFKFSK---SCSNDDTKIIDANCLVDGFVNESKYHYMNQSVFLKNTSYAFN 190

Query: 458 SRENGKFSRMLDYRT 472
              + K +   +   
Sbjct: 191 IFLDSKENTFFEKIE 205


>gi|310831386|ref|YP_003970029.1| putative DNA methyltransferase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386570|gb|ADO67430.1| putative DNA methyltransferase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 550

 Score = 38.8 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 28/201 (13%)

Query: 113 AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
            I + F  +  I  ++      +I +    + +       ++   I ++LI +      +
Sbjct: 328 KIIKKF-INVYIKYMKDDKETNQIIRTIKDLFMKNVNNSKQLGELIDKYLIPQ--ELEKK 384

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH------ 226
              +  TP  +       +        K        +++P  G GGF+ D ++       
Sbjct: 385 SNAEVSTPFKLRQEMLDKMPIEFWKSKK-------KVFEPCAGKGGFIVDIIDRFMNGLK 437

Query: 227 --VADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS- 283
             + D    +K       +  ++ P    +C        L  DP  +   N  +G+TL  
Sbjct: 438 KTIPDEKKRYKTIVEKCLYFSDINPTNIFICK-------LLIDPYNEYKLNYNEGNTLEL 490

Query: 284 --KDLFTGKRFHYCLSNPPFG 302
             K+ +    F   + NPP+ 
Sbjct: 491 NIKEKWGIDYFDAVIGNPPYN 511


>gi|319897177|ref|YP_004135372.1| n5-glutamine methyltransferase, modifies release factors rf-1 and
           rf-2 [Haemophilus influenzae F3031]
 gi|317432681|emb|CBY81044.1| N5-glutamine methyltransferase, modifies release factors RF-1 and
           RF-2 [Haemophilus influenzae F3031]
          Length = 292

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 34/214 (15%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR    +     L       +E+P     + D   GTG       + ++      K    
Sbjct: 94  PRPDTEILVEKALQIALEKLEENP-PHFRILDLGTGTGAIALALASELSSIC--QKRLIS 150

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L   G +L P+  A+  +                 N++   +   D  TG +F   +SNP
Sbjct: 151 LEIIGVDLMPDVVALAQSN----------AERNQLNVEFLQSCWFDNITG-KFDLIVSNP 199

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAI 358
           P+           + EH +    RF P    +++      L H+        N  G    
Sbjct: 200 PYI--------DAQDEHLHQGDVRFEPLSALVANDEGYADLRHIIELASSYLNSNGVL-- 249

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
                 L       GE ++R    EN    +E +
Sbjct: 250 ------LLEHGWQQGE-KVRSIFQENHWEMVETV 276


>gi|225859801|ref|YP_002741311.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585]
 gi|225721361|gb|ACO17215.1| adenine-specific DNA methylase [Streptococcus pneumoniae 70585]
          Length = 317

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF   N +  ++IL  +
Sbjct: 264 LFANANQSKTIFILQKK 280


>gi|296110509|ref|YP_003620890.1| hypothetical protein LKI_01890 [Leuconostoc kimchii IMSNU 11154]
 gi|295832040|gb|ADG39921.1| hypothetical protein LKI_01890 [Leuconostoc kimchii IMSNU 11154]
          Length = 220

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 27/222 (12%)

Query: 104 IASFSDNAKAIF---EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           I + S     IF   E F     + ++        +             + +      Y+
Sbjct: 2   IKTASKTIHEIFGVKESFKLPDEMMKI--------VLDKEKRETAMMRYLDEYTRDLSYD 53

Query: 161 HLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
                +  E +  +  +   TP  +  + + ++            G   + Y+PT GTGG
Sbjct: 54  GFHEYYEEEQAERKKNKQDFTPDSISDILSKIV------------GTSNSYYEPTAGTGG 101

Query: 219 FLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNI 276
            L    +            P   +   +EL        +  + IR + +     D+    
Sbjct: 102 MLIRKWHQDQMATSPFDYKPSNYLFFAEELSDRALPFLIFNLAIRGINAAVVHGDVLTRE 161

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
            +G    ++          ++  P+  + +K     + E + 
Sbjct: 162 ARGVFFIQNDNDDFLGFSSVNIMPYSDEVKKYFGIQKWEGEK 203


>gi|157953703|ref|YP_001498594.1| hypothetical protein AR158_C513L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068351|gb|ABU44058.1| hypothetical protein AR158_C513L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 369

 Score = 38.8 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 79/251 (31%), Gaps = 64/251 (25%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           ++ G +       F TP+ +      ++          +P    ++ +P+CG+G FL D 
Sbjct: 12  KKLGMKHRSKMGIFFTPKSLR----DIVFQH----IHINPQ---SVLEPSCGSGEFLIDC 60

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                D              G EL+     V                     I     L+
Sbjct: 61  ETRFPDAN----------ITGVELDVTLAQVSKEN------------TTRTIIHTQDFLT 98

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
              F G +F   + NPPF +        ++  +K    GR           S L++  L 
Sbjct: 99  ---FVGGKFDLIIGNPPFVQ--------MKAVNKQASTGR-----------SNLYIEILF 136

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFFRT 401
             +    N  G  A+VL S+ +     G      R  +L   +I  E I       F  T
Sbjct: 137 KCMTQHLNDNGVLAMVLPSTIMN----GHFSRPTRELILSKKIIHFETI---RDHTFKDT 189

Query: 402 NIATYLWILSN 412
                + ++ N
Sbjct: 190 KAGVSILVVQN 200


>gi|322510888|gb|ADX06201.1| putative site-specific DNA-methyltransferase [Organic Lake
            phycodnavirus 2]
          Length = 1369

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 13/147 (8%)

Query: 168  SEVSEGAEDFMTPRDVV--HLATAL-LLDPDDALFKESPGMIRTLYDPTCGTGGFLTD-- 222
                +   +  TP   +   +   L +   +               D T G G F     
Sbjct: 906  EVEKKKFGEVFTPMSFINNDMLGDLEIYYKEKYNKNIFEDETLKWGDTTAGMGNFPIAIY 965

Query: 223  --AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
               M+ +     + K     +        E +        I +   +   +   N+ +G 
Sbjct: 966  YKLMDGLKKKIPNDKNRKKHILEKMLFMAENN---KKNCFIVKQIFNMNNEFKLNLYEGD 1022

Query: 281  TLSKD---LFTGKRFHYCLSNPPFGKK 304
            +L  D    F   +F   + NPP+ ++
Sbjct: 1023 SLQLDIQKEFGIDKFDIVIGNPPYNEE 1049


>gi|307284206|ref|ZP_07564374.1| hypothetical protein HMPREF9515_02281 [Enterococcus faecalis
           TX0860]
 gi|306503362|gb|EFM72612.1| hypothetical protein HMPREF9515_02281 [Enterococcus faecalis
           TX0860]
          Length = 244

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +  TP+ +V     +       + +    +  T  +P  G G FL   +    +  
Sbjct: 13  QKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAFLLVILERKLNMV 67

Query: 232 SHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           S      ++             +G EL  +   +CV  M  +  ++   +    N
Sbjct: 68  SKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYKEQVEHHN 122


>gi|332281071|ref|ZP_08393484.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp.
           D9]
 gi|332103423|gb|EGJ06769.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Shigella sp.
           D9]
          Length = 1003

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 83/254 (32%), Gaps = 36/254 (14%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                V           + + ++  ++G  F N  +Y+ S + ++N+ + + +Y+ +  +
Sbjct: 175 DDEYKVLYALQTAYAIIVKIIAYKTLSGLVFEN--DYNFSDMINSNSES-MRNYLYTLEE 231

Query: 110 NAKAIFEDFDFSSTIA-----------------RLEKAGLLYKICKNFSGIELHPDTVPD 152
            A  IF  +   + +                   +    +   + +   G          
Sbjct: 232 GA--IFRKYGILNLLEGDFFSWYCTKEQWGDDIFISIKNIFSLLSEYEEGNLFKEGEKVY 289

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++Y ++I     +V     +F TP     LA  L+   ++ +  +S     T  DP
Sbjct: 290 DLFKDLYMNII---PDKVRHSLGEFYTPE---WLAEHLISSAEEHVVNKSN---WTAIDP 340

Query: 213 TCGTGGFLTDA-MNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLE-SD 267
            CG+G F+       ++   +  K     V     G +L P           I      D
Sbjct: 341 CCGSGTFIITLIGKVLSRTHADSKAKLKDVITSVKGIDLNPLAALTARINYFINISHLLD 400

Query: 268 PRRDLSKNIQQGST 281
              ++   I  G  
Sbjct: 401 DGSEVEIPIYLGDA 414


>gi|254497856|ref|ZP_05110622.1| protein methyltransferase HemK [Legionella drancourtii LLAP12]
 gi|254352934|gb|EET11703.1| protein methyltransferase HemK [Legionella drancourtii LLAP12]
          Length = 261

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 47/165 (28%), Gaps = 37/165 (22%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F S   +     + PR    L   L L+      K        + +   G+G      
Sbjct: 60  REFWSLNLKVNRHTLIPRHETELLVELALE------KLPNSPNTCILELGTGSGAIALAL 113

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES--DPRRDLSKNIQQGST 281
                      K  P       ++  E   +     L  +L +      D   NI     
Sbjct: 114 ----------AKERPQWHIVACDVSEEALLIAKENALHHQLSNVTFYHSDWYSNI----- 158

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
                   +++H  +SNPP+  +        +  H N    RF P
Sbjct: 159 ------PQQQYHAIISNPPYIAE--------QDPHLNEGDLRFEP 189


>gi|255690417|ref|ZP_05414092.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
 gi|260624100|gb|EEX46971.1| putative DNA methylase [Bacteroides finegoldii DSM 17565]
          Length = 1926

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 57/245 (23%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351
           +SN PFG     D    + E    +         + S      +  FL     K      
Sbjct: 194 VSNIPFG-----DVAVFDPEFSGSKDP------ARHSAARTIHNYFFL-----KSLDAVR 237

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408
            GG  A + S   L         + IR +++ +  +  +  LP +LF     T + + L 
Sbjct: 238 EGGIVAFITSQGVL----DAPTNAPIREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLI 293

Query: 409 ILSNR 413
           IL   
Sbjct: 294 ILQKN 298


>gi|254426203|ref|ZP_05039920.1| hypothetical protein S7335_771 [Synechococcus sp. PCC 7335]
 gi|196188626|gb|EDX83591.1| hypothetical protein S7335_771 [Synechococcus sp. PCC 7335]
          Length = 1329

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 26/140 (18%)

Query: 169 EVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR----TLYDPTCGTGGFLTDAM 224
           E         TPR +        L P        P   +     + D   G+  FL +  
Sbjct: 513 EERRRTGSHYTPRKLTQPIVETTLRPIFERLGSQPTAEQILELKVCDLAMGSAAFLVEVC 572

Query: 225 NHVAD---------------------CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263
             +A+                          ++      +G +  P    +    + +  
Sbjct: 573 RQLAERLVAAWDYYGMPEDVPDAVEPLLYARRLVAQRCLYGVDKNPFAVNLAKLSLWLVT 632

Query: 264 LESDPRRDLSKN-IQQGSTL 282
           L  D       + ++ G +L
Sbjct: 633 LARDLPFTFVDHALKCGDSL 652


>gi|121592630|ref|YP_984526.1| type III restriction system methylase [Acidovorax sp. JS42]
 gi|120604710|gb|ABM40450.1| type III restriction system methylase [Acidovorax sp. JS42]
          Length = 213

 Score = 38.8 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 29/144 (20%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VA 228
              +  TP  +V     L+ D        +  +     +P CG+G F+   +      V 
Sbjct: 12  DHGEVFTPPWMVEAMLDLVKDE-------AERIDARFLEPACGSGNFIVQILRRKLAAVE 64

Query: 229 DCGSHHKIPPILV-------PHGQELEPETHAVCVAGML------IRRLESDPRRDLS-- 273
                                +G EL  +  A C A +L      ++  E+D     +  
Sbjct: 65  RKYGKSDFERRHYALLGLMCIYGIELLADNIAECRANVLEVFADYLQLDEADDLYRAALY 124

Query: 274 ---KNIQQGSTLSKDLFTGKRFHY 294
              +N+  G  L+     G+   +
Sbjct: 125 VLLQNLVHGDALTMRDHHGQAITF 148


>gi|282600630|ref|ZP_05979275.2| conserved hypothetical protein [Subdoligranulum variabile DSM 15176]
 gi|282571651|gb|EFB77186.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176]
          Length = 1683

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 61/256 (23%), Gaps = 60/256 (23%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +  S       T   V+      +                 + +P+ G G F    
Sbjct: 959  EEYAAARSSTLNAHYTSPTVIQAIYEAV--------DRMGFETGNILEPSMGVGNFFGML 1010

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
               +               +G EL+P +  +              +     +I  G    
Sbjct: 1011 PEKMR----------NSRLYGVELDPVSGRIAK------------QLYPKADITVG--GF 1046

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +       F   + N PFG+    DK   +                              
Sbjct: 1047 ETTDRRDFFDLAIGNVPFGQYQVNDKAYNKLNFNIHNY--------------------FF 1086

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF-FRTN 402
             K       GG  A V            + +S +RR+L +   +   + LP D F     
Sbjct: 1087 AKALDQVRPGGVVAFVT-----SRYTMDAKDSTVRRYLAQRAELLGAIRLPNDAFKKNAG 1141

Query: 403  IATY--LWILSNRKTE 416
                  +  L  R   
Sbjct: 1142 AEVVSDIIFLQKRDRP 1157


>gi|209879984|ref|XP_002141432.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557038|gb|EEA07083.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 1601

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNT--SEYSLSTLGSTNTRNNLESYIASFS-DN 110
            + + Y     SN+   +F +V   SF+N   S      L  +  +   + Y+A  S   
Sbjct: 542 ELLKLYKDSIESNLTDNNFKQVE-MSFFNVMESIEDRMKLLDSKIQLLSDDYVAQLSNRE 600

Query: 111 AKAIFEDFD--FSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGS 168
            K+IFE +D   S+  A+L    L   + +             +R +  +Y  L+R+F  
Sbjct: 601 CKSIFEKYDKIISNIKAKLPDNELFDTLLRK-----GVELNEQERQLGQLYALLMRKFTD 655

Query: 169 E 169
           E
Sbjct: 656 E 656


>gi|160890942|ref|ZP_02071945.1| hypothetical protein BACUNI_03387 [Bacteroides uniformis ATCC 8492]
 gi|156859941|gb|EDO53372.1| hypothetical protein BACUNI_03387 [Bacteroides uniformis ATCC 8492]
          Length = 1926

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 71/245 (28%), Gaps = 57/245 (23%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351
           +SN PFG     D    + E    +         + S      +  FL     K      
Sbjct: 194 VSNIPFG-----DVAVFDPEFSGSKDP------ARHSAARTIHNYFFL-----KSLDAVR 237

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408
            GG  A + S   L         + IR +++ +  +  +  LP +LF     T + + L 
Sbjct: 238 EGGIVAFITSQGVL----DAPTNAPIREYMMNHTNLVGVARLPNNLFTDNAGTEVGSDLI 293

Query: 409 ILSNR 413
           IL   
Sbjct: 294 ILQKN 298


>gi|114799218|ref|YP_760309.1| hypothetical protein HNE_1600 [Hyphomonas neptunium ATCC 15444]
 gi|114739392|gb|ABI77517.1| conserved domain protein [Hyphomonas neptunium ATCC 15444]
          Length = 692

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 61/191 (31%), Gaps = 31/191 (16%)

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPH-------------GQELEPETHA 253
             + DP CG+G FL  ++  + D      +                    G E+ P    
Sbjct: 92  FRVLDPACGSGNFLYLSLKALKDIEHRANVEFEAFGFARRPPKVGPEAVKGIEINPYAAE 151

Query: 254 VCVAGMLIRRLE----------SDPRRDLSKNIQQGST-LSKDLFTGKR--FHYCLSNPP 300
           +    + I  ++          ++P      NI+     L+ D    +       + NPP
Sbjct: 152 LARVSIWIGEIQWMRANGFEATTNPILKPLNNIECRDAVLNPDGTRAEWPDVDVVVGNPP 211

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F    ++ +D +   + +     +   +    +  ++      +   +      RA +V 
Sbjct: 212 F-LGGKRLRDELGGHYVDTLFSAWRASVRP--EADLVLYWFARSGELIQTGRLKRAGLVS 268

Query: 361 SSSPLFNGRAG 371
           ++S    G A 
Sbjct: 269 TNSI--RGGAN 277


>gi|184160031|ref|YP_001840899.1| hypothetical protein ACICU_p0045 [Acinetobacter baumannii ACICU]
 gi|301598019|ref|ZP_07243027.1| hypothetical protein AbauAB059_19438 [Acinetobacter baumannii
           AB059]
 gi|183211625|gb|ACC59021.1| Uncharacterized conserved protein [Acinetobacter baumannii ACICU]
          Length = 136

 Score = 38.8 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 11/93 (11%)

Query: 103 YIASFSDNAK-AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           Y   F+ N +    +  +      RL+   L Y +              P  V+ +IY  
Sbjct: 54  YQNLFNHNIENEYLQRINRYDVSGRLKIKKLFYLLVDL-----CEAKGEPYDVLGSIYME 108

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP 194
           L        ++    + TP +V +L   ++  P
Sbjct: 109 L-----EIGNDHIGQYFTPSEVSNLCAQVVDRP 136


>gi|313115905|ref|ZP_07801333.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310621773|gb|EFQ05300.1| protein, SNF2 family [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1922

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 15/143 (10%)

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL-----MHLANKLELPPNGG 353
           P         +    ++  +  +G    G  K++D +   L      +   K       G
Sbjct: 459 PQADITVAGFETTDRRDFYDLAVGNVPFGQYKVNDKAYNKLGFSIHNYFFAKTIDQIRPG 518

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWIL 410
           G  A V S   +      S +S  R+++ E   +   + LP + F     T + + +  L
Sbjct: 519 GVIAFVTSRFTM-----DSKDSSARKYMAERADLLGAIRLPNNAFKANASTEVVSDILFL 573

Query: 411 SNRKTEER--RGKVQLINATDLW 431
             R          VQL    D +
Sbjct: 574 QKRDRPADIEPAWVQLGQTEDGF 596


>gi|194898525|ref|XP_001978827.1| GG12428 [Drosophila erecta]
 gi|190650530|gb|EDV47785.1| GG12428 [Drosophila erecta]
          Length = 488

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 13/203 (6%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           HLI+    +  +   +      +  L     +  D  L          ++DP  GTG  L
Sbjct: 180 HLIKELSLKQRKFIGNTSMDAQLSLLMANQAMVRDGDL----------VFDPFVGTGSLL 229

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
             A               ++    +              +   L+     D   ++    
Sbjct: 230 VSAAKWGGYVLGADIDYMMVHARCRPSRITQKVREKDESIRANLKQYGCADRYMDVVVAD 289

Query: 281 TLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339
             S  ++  +  F   +++PP+G +   +K   +   +           P  S  S+  L
Sbjct: 290 -FSNPVWDSRISFDSIITDPPYGIREATEKVEKKISLRADTRSENMVHYPSTSHYSLQSL 348

Query: 340 M-HLANKLELPPNGGGRAAIVLS 361
              L          GGR    L 
Sbjct: 349 YGDLLEFAAKHLKMGGRLVCWLP 371


>gi|251772067|gb|EES52637.1| putative helicase [Leptospirillum ferrodiazotrophum]
          Length = 1618

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 61/238 (25%), Gaps = 31/238 (13%)

Query: 171  SEGAEDFMTPRDVVHLATALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVAD 229
            +E      TP +VV                K        + DP  GTG FL   +     
Sbjct: 845  AERVGIVYTPVEVVDFILKSADGILRKHFEKGLTDSDIHILDPFTGTGTFLVRLLQSGII 904

Query: 230  CGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS-KNIQQGSTL----SK 284
                         H  E+    + +    +     +   R   +   I    T      +
Sbjct: 905  HPGDLLRKYQEELHANEIVLLAYYIASINIESAFHDLTERPYEAFPGIVLTDTFQLGEKE 964

Query: 285  DLFTGKRF----------------HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
              F G+ F                   + NPP+    + + D  +         R     
Sbjct: 965  SPFFGRVFLPENNERVARQKRAPIRVIVGNPPYSVGQKSENDNSKNRDYPHLDKRIEDTY 1024

Query: 329  PKISDGSM---LFLMHL--ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWL 381
             K S   +   L+  ++             G    V ++S + +         +R+ L
Sbjct: 1025 AKESSAGLKKSLYDSYIRAIRWASDRIENCGVIGFVTNASFIDSNTTDG----LRKCL 1078


>gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii ATCC
            33806]
 gi|224946756|gb|EEG27965.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii ATCC
            33806]
          Length = 1650

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 61/233 (26%), Gaps = 35/233 (15%)

Query: 113  AIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSE 172
                D +  S    L      Y+  +  +           +V+ ++YE   R    + SE
Sbjct: 816  DALSDHNVESETDSLVD---FYQSVQRRAEAVNSASGKQ-QVVKDLYETFFRTAFKKQSE 871

Query: 173  GAEDFMTPRDVVHLATALLLDPDDALFKES-PGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
                  TP ++V        D     F  +       + DP  GTG F+   +       
Sbjct: 872  ALGIVYTPVEIVDFILRAANDAMRKHFGRTLSDENVHILDPFTGTGTFIVRLLESGLIRP 931

Query: 232  SHHKIPPILVPHGQELEPETHAVCVAGMLI-----------RRLESDPRRDLSKNIQQGS 280
                       H  E+    + V    + +           R  + +P       I    
Sbjct: 932  EDTARKYAKELHATEIMLLAYYVAAVNIEMTYNSLRAEAAKRDGKPEPEYVPFNGIALAD 991

Query: 281  TLS----KDLFTGKRF---------------HYCLSNPPFGKKWEKDKDAVEK 314
            T       D    K F                  ++NPP+    +   D  E 
Sbjct: 992  TFQVHEDDDTLDLKIFKENNERIERQKTAPIQAIVANPPYSSGQKNANDLNEN 1044


>gi|291556525|emb|CBL33642.1| Type I restriction-modification system methyltransferase subunit
           [Eubacterium siraeum V10Sc8a]
          Length = 535

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 29/159 (18%)

Query: 264 LESDPRRDLSKNIQQGSTLSKD----LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319
           + ++    +   I+    L+ D     FT +++   +S P FG +   + +         
Sbjct: 155 IRTELLSVVYAGIKNVKLLAADIYSYGFTTEKYDLIISIPIFGGRVLVNGEDFISREP-- 212

Query: 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379
                           ++ + +L   + +  N     A+VL +   F G +    + +R 
Sbjct: 213 ---------------DLIAVQNLLYHINMDGN----LAMVLPAKITFGGGST---AALRE 250

Query: 380 WLLENDLIEAIVALPTDLFFR-TNIATYLWILSNRKTEE 417
           ++  N  I+ I  LP  LF   T+I TYL++ S  +T++
Sbjct: 251 YIERNYKIKEISVLPAGLFTPYTSIRTYLFVFSTGRTDD 289


>gi|229829879|ref|ZP_04455948.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
 gi|229791177|gb|EEP27291.1| hypothetical protein GCWU000342_01985 [Shuttleworthia satelles DSM
            14600]
          Length = 2913

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 72/257 (28%), Gaps = 59/257 (22%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+                +       + +P+ G G       N + +       
Sbjct: 1183 FYTPKAVIDSVYK--------TLSDMGFKQGNILEPSMGVG-------NFIGNIPDEMNK 1227

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 1228 SK---FYGVELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDAVI 1271

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1272 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1311

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1312 AFIT-----SSGTMDKKDESVRRYLAARTEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1366

Query: 414  KTEERRGKVQLINATDL 430
             +   R +  +  A D 
Sbjct: 1367 DSIRERDEDWIHLAEDE 1383


>gi|323447042|gb|EGB03008.1| hypothetical protein AURANDRAFT_34620 [Aureococcus anophagefferens]
          Length = 313

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 48/185 (25%), Gaps = 10/185 (5%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--LVPHG 244
               +                 + D  CG G  L     +V D     K          G
Sbjct: 78  MCNGVFVRVFDDLPLEDQP-AAVADMGCGDGRLLLTLYEYVRDHTKRGKHLDKFPFTVIG 136

Query: 245 QELEPETHAVCVAGMLIRRLESDPR-RDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
            +   E+  V    +  R +  + +  D+         L K  F         S      
Sbjct: 137 IDFNYESLDVTKETLGSRNIPFEVQWGDIGDPDAAMDELEKRGFPRD------SVLHVRT 190

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363
             + D+  +  +    +   +  G+   +DG+++    +   L         A  V    
Sbjct: 191 FIDHDRPYIAPKRPGDDYAMYAHGVYNKNDGTIIDPSTMLQSLVEHLERWSDAVGVHGMC 250

Query: 364 PLFNG 368
            L  G
Sbjct: 251 ILEAG 255


>gi|288549971|ref|ZP_05968806.2| conserved hypothetical protein [Enterobacter cancerogenus ATCC
           35316]
 gi|288316808|gb|EFC55746.1| conserved hypothetical protein [Enterobacter cancerogenus ATCC
           35316]
          Length = 1067

 Score = 38.8 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 18/124 (14%)

Query: 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTL 209
               V+ ++Y+ L+     ++ +   +F TP  +V      + +P          M + +
Sbjct: 337 QTRDVLRDLYQGLV---PGKLRQSLGEFYTPDWLVDFTLNKVSEPSL--------MTKRV 385

Query: 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIR 262
            DPTCG+G FL   +           +              G +L P          LI 
Sbjct: 386 LDPTCGSGAFLLAVIRKKRQLAKEKNLSARETLKLICDTVWGFDLNPLAVQTARVNFLIE 445

Query: 263 RLES 266
             + 
Sbjct: 446 VADL 449


>gi|295428282|ref|ZP_06820911.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297590755|ref|ZP_06949393.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|295127682|gb|EFG57319.1| site-specific DNA-methyltransferase [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297575641|gb|EFH94357.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
          Length = 325

 Score = 38.8 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 86/297 (28%), Gaps = 49/297 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            Y  L++    + +      +TP  +  +   L+          +      + D   GTG
Sbjct: 74  AYLSLMQEEKIQANHQ----ITPDSIGLILGFLV------ERFMNNQEELHIVDIASGTG 123

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                    + +         +      +      +V +A  L          ++  ++ 
Sbjct: 124 HLSATVKEVLPEIA------VMHHLIEVDPVLSRVSVHLANFL----------EIPFDVY 167

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
               +       +     + + P G            E        F  G    S    L
Sbjct: 168 PQDAIMP--LPLEEADIVIGDFPVGY-------YPIDERSRDFKLGFEEGH---SYSHYL 215

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
            +    N L+         A ++  S +F G       ++ +++     ++A + LP  L
Sbjct: 216 LIEQAINALKDAGY-----AFLVVPSNIFTGE---HVKQLEKYIATETEMQAFLNLPPTL 267

Query: 398 FFRTNIATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKR--RIINDDQRRQ 451
           F        + IL  +K+ E +  +V L N  D     + +G         D  R +
Sbjct: 268 FKNEKARKSILILQKKKSGETKSVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPK 324


>gi|325300456|ref|YP_004260373.1| hypothetical protein Bacsa_3375 [Bacteroides salanitronis DSM
           18170]
 gi|324320009|gb|ADY37900.1| hypothetical protein Bacsa_3375 [Bacteroides salanitronis DSM
           18170]
          Length = 1129

 Score = 38.8 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 75/265 (28%), Gaps = 66/265 (24%)

Query: 29  TDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN------ 82
           + + K IL       L   +         +            + +      F N      
Sbjct: 260 SKYYKAILQNLFFAMLNSPITKEGETELSERHFRKNRGDYDNNKLMRYESLFANPQLFVD 319

Query: 83  ----TSEYSLSTLGSTNTRNNLESYIASFSDN---------------AKAIF---EDFDF 120
               T  +    L       + ++YI  FSD                AK +      +  
Sbjct: 320 LANRTVPFLNGGLFDCLDDKDADNYIDGFSDRKEVQESLFVPDYIFFAKEVIVDLSHWYE 379

Query: 121 SSTIARLEKAGLLYKICK-NFSGIELHPDTV----PDRVMSNIYEHLIRRFGSE----VS 171
                +++ +G+L  + + NF+  E  P          ++  ++E+L+  +  E      
Sbjct: 380 DKKKKKVKVSGILNILKRYNFTIEENTPFDQEVSLDPELLGKVFENLLASYNPETQTTAR 439

Query: 172 EGAEDFMTPRDVVHLATA---------------------LLLDPDDALFKESPGMIR--- 207
           +    F TPR++V                          L+   DD +        R   
Sbjct: 440 KQTGSFYTPREIVQYMVDESLVAHLKRTVGEELESQFRQLMQYTDDEVNLTDEQRKRIMQ 499

Query: 208 -----TLYDPTCGTGGFLTDAMNHV 227
                 + DP CG+G F    +  +
Sbjct: 500 SLYNCKILDPACGSGAFPMGMLQQM 524


>gi|156097604|ref|XP_001614835.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148803709|gb|EDL45108.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 276

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 30/116 (25%), Gaps = 9/116 (7%)

Query: 36  LPFTLLRRLECALEPTRSAVREKYLAFGGSNID--LESFVKVAGYSFYNTSEYSLSTLGS 93
           L    L+++       ++    K  +          E+  +      +N +      L +
Sbjct: 111 LVLMFLKKISDTYVDDQAKWMNKMRSSQEEQGKALEEAMNEYEKNILFNHALKEQQLLHN 170

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIAR----LEKAGLL---YKICKNFSG 142
               +     I +  +  + +   F+      +    LEK   L            
Sbjct: 171 NKKISEWNETIENAYEAQQEVLRQFEAKKREDKKKMALEKNNELIIAKDYIDKIKE 226


>gi|297161974|gb|ADI11686.1| putative RNA methylase [Streptomyces bingchenggensis BCW-1]
          Length = 317

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 20/179 (11%)

Query: 188 TALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
             +L        +        + DP CG G  L +A            +       G E 
Sbjct: 32  AKMLPAIAAHAIRTYTQPGDLVLDPMCGIGTTLVEA------------VHLGRHAFGTEY 79

Query: 248 EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKKWE 306
           EP+   +    + +   +    +           L+             +++PP+G    
Sbjct: 80  EPKWANMARTNLALAARQGATGKAAVTCTDARHLLTHIPPERHGTAALVITSPPYGPSVH 139

Query: 307 KDKDAVEKEHKNG------ELGRFGPGLPKISDGSML-FLMHLANKLELPPNGGGRAAI 358
               +  +  + G         R    L  ++   +L    H+  +       GG A +
Sbjct: 140 GQVRSTRETGERGVVKNHYRYSRDPHNLAHVATDQLLDAFTHILTQCRTMLRPGGTAVV 198


>gi|189426729|ref|YP_001953905.1| conserved hypothetical protein [Geobacter lovleyi SZ]
 gi|189422988|gb|ACD97385.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 918

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 48/214 (22%)

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------LVPHGQELEPE 250
               + DP CG+G FL  ++  + D      +                     G E+   
Sbjct: 368 KTLRVLDPACGSGNFLYLSLIALKDLEHQVTLEAESLGFHPEFLFHAGPWNVMGIEINEY 427

Query: 251 THAVCVAG--------MLIRRLESD--PRRDLSKNIQQGSTLSK-DLFTGK--RFHYCLS 297
              +            M+   +  +  P       I+    L   D       +    + 
Sbjct: 428 AAELARVTIWIGELQWMIKHGMAYNTKPILQTMDQIENRDALLNADGTEAHWPQAEVIVG 487

Query: 298 NPPFGKKWEKDKDAVEKEH----KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           NPPF     K    + +E+    +    GR   G        ++         E     G
Sbjct: 488 NPPF-LGGSKMLGELGEEYVTTLRKVYKGRVPGG------ADLV-----TYWFEKARETG 535

Query: 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387
            R+ +V ++S    G +     E+ + + E   I
Sbjct: 536 VRSGLVATNSI--RGGSN---REVLKRITETRQI 564


>gi|309804625|ref|ZP_07698690.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308166017|gb|EFO68235.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
          Length = 906

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 52/201 (25%)

Query: 167 GSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT------------LYDPT 213
             +         T    ++ +   L LD     F +  G  +               DP 
Sbjct: 286 SEDSRSHLGMHYTSVPNIMKVIKPLFLDELRNEFDKRKGSYKKLQHLYERIGKIKFMDPA 345

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEP---E 250
           CG+G FL      +                                   +G E++    +
Sbjct: 346 CGSGNFLIVTYKQLRQLEIDILKEQNKILAEEGSGKAMMYLPSVTLDQFYGIEIDDFACD 405

Query: 251 THAVCV------AGMLIRRLESDPRR-----DLSKNIQQGSTLSKDL-----FTGKRFHY 294
           T  + +        + +R   ++  R       +  I  G+ L  D             Y
Sbjct: 406 TTRLSLWIAEHQMNIKLRDEINNAVRPTLPLQHAGAIVCGNALRLDWEKILPHKKDDEVY 465

Query: 295 CLSNPPFGKKWEKDKDAVEKE 315
              NPP+       +    KE
Sbjct: 466 LFGNPPYLGSHGAKQKKTHKE 486


>gi|227485134|ref|ZP_03915450.1| conjugative transposon DNA recombination protein [Anaerococcus
            lactolyticus ATCC 51172]
 gi|227236967|gb|EEI86982.1| conjugative transposon DNA recombination protein [Anaerococcus
            lactolyticus ATCC 51172]
          Length = 2573

 Score = 38.8 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 73/270 (27%), Gaps = 59/270 (21%)

Query: 164  RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
              + +        F TP+ V+        D               + +P+ G G      
Sbjct: 1167 SEYEAARDSTLTSFYTPKTVI--------DGVYKTLSGMGFKQGNILEPSMGIG------ 1212

Query: 224  MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
             N + +             +G EL+  +  +                    +IQ    L 
Sbjct: 1213 -NFIGNLPDEMNKSK---FYGVELDSVSGRIGK------------LLYPESDIQV-KGLE 1255

Query: 284  KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
            +  F+   F   + N PFG+    D++         +                       
Sbjct: 1256 ETGFSNNFFDVAIGNVPFGEYKVNDREYNRNNFLIHDY--------------------FF 1295

Query: 344  NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
             K       GG  A +       +G     +  +RR+L         + LP D F     
Sbjct: 1296 AKSIDKVRNGGVIAFIT-----SSGTMDKKDESVRRYLAARTEFIGAIRLPNDTFKGVAG 1350

Query: 401  TNIATYLWILSNRKTEERRGKVQLINATDL 430
            T + + +  L  R +   R +  +  A D 
Sbjct: 1351 TEVTSDIIFLKKRDSVLERDEDWIHLAEDE 1380


>gi|323136927|ref|ZP_08072007.1| hypothetical protein Met49242DRAFT_1394 [Methylocystis sp. ATCC
           49242]
 gi|322397688|gb|EFY00210.1| hypothetical protein Met49242DRAFT_1394 [Methylocystis sp. ATCC
           49242]
          Length = 733

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 39/203 (19%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADC--------------GSHHKIPPILVPHGQELEPETHA 253
            + DP CG+G FL  A+  V D                         + HG E+ P    
Sbjct: 52  RILDPACGSGNFLYLALQGVKDLEYRVVNECETLGLDRPAMMRVGPEILHGIEINPFAAE 111

Query: 254 VCVAGMLIRRL----------ESDPRRDLSKNIQQGSTLSKDLFTGKRF---HYCLSNPP 300
           +    + I  +             P      +I+    +         +    + + NPP
Sbjct: 112 LARTTIWIGDIQWGIKNAIYSRPSPILRKLDSIECRDAVLTPEGKEAEWPDADFIVGNPP 171

Query: 301 FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360
           F    +  +  +   + +     +   +P  ++  ++          +      R  +V 
Sbjct: 172 F-LGGKLQRKGLGDAYVDMLFKAYDGAVP--AEADLVCYWFSKAWRAVVSGKARRVGLVS 228

Query: 361 SSSPLFNGRAGSGESEIRRWLLE 383
           ++S    G A        R LLE
Sbjct: 229 TNSI--RGGAN-------RRLLE 242


>gi|222481172|ref|YP_002567408.1| putative restriction/modification enzyme [Halorubrum lacusprofundi
           ATCC 49239]
 gi|222454548|gb|ACM58811.1| putative restriction/modification enzyme [Halorubrum lacusprofundi
           ATCC 49239]
          Length = 1432

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 43/159 (27%)

Query: 167 GSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG-------------------MIR 207
           GS   +    + TP  VV       L+P     +                          
Sbjct: 476 GSGERKATGSYYTPEYVVEYIVENTLEPLVDDIRVDLAGQSARGEDRGFAAEFADRIFDL 535

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPP-----------------------ILVPHG 244
            + DP  G+G FLT A++++A      +                              +G
Sbjct: 536 KILDPAMGSGHFLTSAIDYLAREIIDAQERQAAQQGIETVNQEHDINWARRQVAQRCIYG 595

Query: 245 QELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTL 282
            +L P    +    + +R L ++ P   L  +++ G++L
Sbjct: 596 VDLNPLAVELAKVSLWLRTLAAEQPLAFLDHHLKTGNSL 634


>gi|145629733|ref|ZP_01785529.1| HemK [Haemophilus influenzae 22.1-21]
 gi|144978070|gb|EDJ87849.1| HemK [Haemophilus influenzae 22.1-21]
          Length = 264

 Score = 38.8 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 34/214 (15%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR    +     L       +++P     + D   GTG       + +       K    
Sbjct: 66  PRPDTEVLVEKALQISLEKLEQNP-PHFRILDLGTGTGAIALALASELFSIC--QKRQIS 122

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L   G +L P+  A+  +       E +         +    ++       +F   +SNP
Sbjct: 123 LEIIGVDLMPDVVALAQSN-----AERNQLNVQFLQSRWFDNIT------GKFDLIVSNP 171

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+          V+ EH +    RF P    + +D     L ++        N       
Sbjct: 172 PYI--------DVQDEHLHQGDVRFEPLSALVANDAGYADLRYIIESAPNYLN------- 216

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
             + + L       GE ++R    EN    +E +
Sbjct: 217 -FNGTLLLEHGWQQGE-KVRSIFQENHWEMVETV 248


>gi|108563868|ref|YP_628184.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori HPAG1]
 gi|107837641|gb|ABF85510.1| restriction enzyme BcgI alpha chain-like protein [Helicobacter
           pylori HPAG1]
          Length = 142

 Score = 38.4 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 393 LPTDLFFR-TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQ 451
           +PTDLF     + T ++I    +  +    V+ I+  +        G         +  +
Sbjct: 1   MPTDLFMPQAGVQTSVYIFKAHEPHDYEKPVKFIDFRNDGFKRTKRGLNETSNPTKRYEE 60

Query: 452 ILDIYVSRENGKFSRML 468
           I+ IY +  N K S+ L
Sbjct: 61  IIKIYKAGLNAKVSKEL 77


>gi|322807393|emb|CBZ04967.1| modification methylase bstVI [Clostridium botulinum H04402 065]
          Length = 179

 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 26/173 (15%)

Query: 105 ASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIR 164
            +F DN + IF           +     +YK  +  +  +       +  +S  Y   I+
Sbjct: 2   NAFKDNIEKIFNIL--------ISPINSIYKY-EAINNFKYKLSIGKNENISLKYYEFIK 52

Query: 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
                  +      TP+++ +      ++ +D            + DP+CG G  L    
Sbjct: 53  -----GKKETGVIYTPQEISNYMIENTINKED----VINNPFIKILDPSCGCGNILIPCF 103

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
            ++ +    +            +  E   +         L+++        I 
Sbjct: 104 FYLKNIFEENLKEINKK---NNINLEKQYISK-----HILDNNLYGFDIDTIA 148


>gi|194745734|ref|XP_001955342.1| GF18712 [Drosophila ananassae]
 gi|190628379|gb|EDV43903.1| GF18712 [Drosophila ananassae]
          Length = 4505

 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 37  PFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNT 96
               + R    LE  +  + +    + G  + L +    A  +  +     L  L     
Sbjct: 425 GLIKINRTIEVLELFKQRILDYKERYAGHQVLLPALPGGAAAAAASPPPDDLPQLWRFCH 484

Query: 97  RNNLESYIASFSD---NAKAIFEDFDFSSTIARLEKAGLLYKIC-----KNFSGIELHPD 148
            +     +  FS      + +FE       + +LE  GL  K+      + F+  ++  +
Sbjct: 485 EDVFGQTLDGFSAQLLELRQVFEAAVQFQQLEKLEVGGLRGKLLTDRLREIFAEFKVLFE 544

Query: 149 TVPDRVM 155
              +  +
Sbjct: 545 QWSNVDI 551


>gi|307251327|ref|ZP_07533244.1| hypothetical protein appser4_20840 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306856633|gb|EFM88772.1| hypothetical protein appser4_20840 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 153

 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 48/152 (31%), Gaps = 21/152 (13%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSE-VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM 205
              + +R + +++  L   F           F TP  V              +       
Sbjct: 9   NQAIKNRELIDVFNQL---FMDGFSDGDKGQFFTPLSVSQFMAN------TQVQHLINQP 59

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265
           +    + +CG+GG +    +++      ++   ++     +++     +C   + +  + 
Sbjct: 60  VIKQGEMSCGSGGMIIAFADNLMKYNVDYQTKLLVE--CGDVDLRCVKMCYIQLYLYGI- 116

Query: 266 SDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCL 296
                     +   + L+ D +     F+Y L
Sbjct: 117 -------PARVMHRNELAMDTYEEFTTFNYGL 141


>gi|255559765|ref|XP_002520902.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
 gi|223540033|gb|EEF41611.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
          Length = 535

 Score = 38.4 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 322 GRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGES----- 375
           GR          G  + F+  +  KL+     G RA I+  +  L +      +      
Sbjct: 176 GRECFACAPTGSGKTLAFVCPMLMKLKHSSKDGIRAVILCPTRELASQTTRECKKMAKGN 235

Query: 376 EIRRWLLENDLIEA--IVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429
           + R  L+  +L+    +  LP D+   T +   L I   +K +  R +  +++ +D
Sbjct: 236 KFRIKLMTKELVRTKDLSRLPCDILVSTPLRLQLAI-RKKKVDLSRVEYLVLDESD 290


>gi|237650608|ref|ZP_04524860.1| adenine-specific DNA methylase [Streptococcus pneumoniae CCRI 1974]
 gi|237821068|ref|ZP_04596913.1| adenine-specific DNA methylase [Streptococcus pneumoniae CCRI
           1974M2]
          Length = 317

 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSNLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 264 LFANAKQSKTIFILQKK 280


>gi|127436|sp|P10835|MTC3_PBCVC RecName: Full=Modification methylase CviBIII; Short=M.CviBIII;
           AltName: Full=Adenine-specific methyltransferase CviBIII
 gi|93691|pir||S01615 site-specific DNA-methyltransferase (adenine-specific) (EC
           2.1.1.72) CviBIII - Chlorella virus CV-NC1A
 gi|60639|emb|CAA29835.1| unnamed protein product [Paramecium bursaria Chlorella virus NC1A]
          Length = 377

 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 54/259 (20%)

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
            ++  +E  + +   E       F TP+ V               F+ +PG   ++ +P+
Sbjct: 8   QVTTDFEKTLTK---EKKSKQGIFFTPKTVREKL-----FGFTEHFQNTPG--FSILEPS 57

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
           CGTG  +++ +             P+    G EL+ +   +C          S    + +
Sbjct: 58  CGTGEIISECVER----------FPLASIKGVELDNDMSTIC----------SKKYAEYN 97

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            +I     L    + G +F + + NPP+  +    K+            R   G  + + 
Sbjct: 98  VDIVNEDFLL---WKGGKFDFIVGNPPYVVRPSGYKN----------DNRIAKG--RSN- 141

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL 393
              L++  L   +       G  A ++           S    IR+ ++  D++   + L
Sbjct: 142 ---LYVEFLYKCITEHLKEDGILAFIIP----STIGNSSFYEPIRKLIITLDILSFEI-L 193

Query: 394 PTDLFFRTNIATYLWILSN 412
               F  TN      ++ N
Sbjct: 194 DKHDFCDTNTRLCSIVIKN 212


>gi|313230081|emb|CBY07785.1| unnamed protein product [Oikopleura dioica]
          Length = 470

 Score = 38.4 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 16/167 (9%)

Query: 161 HLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220
           +LI ++         +     ++    T L                  ++DP CGTG  L
Sbjct: 188 NLIVKYAVSNRIAVGNTSMDAELCLFMTNL----------AQVRAGSLVFDPFCGTGSML 237

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR-LESDPRRDLSKNIQQG 279
             + +  +          +++  G+               +R  LE     D   +    
Sbjct: 238 LTSAHFQSMVIGSDISWNVMMAKGKSARMGQEN-RKPNETLRGALEGYDLGDKCVDSLVI 296

Query: 280 STLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN--GELG 322
                         F   +++PP+G + + +K    K+  +     G
Sbjct: 297 DNNINPWRTIDDGWFDAIITDPPYGVREKCEKIGTSKKFDDWIDFDG 343


>gi|254779145|ref|YP_003057250.1| M.HpyAVII, type II adenine specific methyltransferase [Helicobacter
           pylori B38]
 gi|254001056|emb|CAX29002.1| M.HpyAVII, type II adenine specific methyltransferase [Helicobacter
           pylori B38]
          Length = 545

 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 43/235 (18%)

Query: 125 ARLEK--AGLLYKICKNFSGIELHPDTVPDR----VMSNIYEHLIRRFGSEVSEGAEDFM 178
            +L K     L  +  +   I  +   + +      + + YE       +        + 
Sbjct: 58  NKLNKYANKSLKSVHNHQELILKYLKILENSSDLEKLGSYYEE---ELSNTTRNLEGIYY 114

Query: 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           TP  +V     L   P D    ++        DP  G+G F+  A+              
Sbjct: 115 TPNGIVE---QLFTLPKDFDASQA-----IFCDPAVGSGNFIMHALKL---------GFK 157

Query: 239 ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSN 298
           +   +G + +    A+       +R++   R D   NI Q   LS       +F    +N
Sbjct: 158 VENIYGYDTDAFAVALTK-----KRIKERYRLDCL-NIMQKDFLSLKHTP--QFDCIFTN 209

Query: 299 PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGG 353
           PP+GKK+ +++    +  K          L +  D + LF +   N L+   + G
Sbjct: 210 PPWGKKYNQNQK---ENFKQQFN------LSQSLDSASLFFVASLNCLKENAHLG 255


>gi|148688808|gb|EDL20755.1| kinectin 1 [Mus musculus]
          Length = 953

 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 2/161 (1%)

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            N +    + KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S     
Sbjct: 480 KNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKL 539

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPY 529
                 + ++ + L M  +  +   A  E  +  +    L Q+  L   ++    QI   
Sbjct: 540 TDTLVSKQQLEQRL-MQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQ 598

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             A    +E  K    K  ++K ++  +    +    K+  
Sbjct: 599 TSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEE 639


>gi|134095836|ref|YP_001100911.1| hypothetical protein HEAR2668 [Herminiimonas arsenicoxydans]
 gi|133739739|emb|CAL62790.1| Putative RNA methylase [Herminiimonas arsenicoxydans]
          Length = 409

 Score = 38.4 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 36/154 (23%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMN---------------------------HVADCGSHHKI 236
               TL+DP CG+G  L +A                              + +    + I
Sbjct: 199 KPGMTLFDPMCGSGTILAEAAQMLAGIPPGLRRNFAFEKFAGFSKEEWAAIKNSVKANPI 258

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
           P      G ++  +  A+  + +    +  D      K I+      +     +     L
Sbjct: 259 PAEPTIFGSDISGDMVAMTRSNLNKAGITFD---VPLKQIEAQ----EVKAPSETPGILL 311

Query: 297 SNPPFGKKW--EKDKDAVEKEHKNGELGRFGPGL 328
           +NPP+G++     D    + +        FG  L
Sbjct: 312 TNPPYGERIGVRGDSTIDDDDMAKEFFSAFGTTL 345


>gi|300214102|gb|ADJ78518.1| Negative regulator of genetic competence [Lactobacillus salivarius
           CECT 5713]
          Length = 832

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 106/401 (26%), Gaps = 51/401 (12%)

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T +   +A      +    +      ++  T       + +   + D             
Sbjct: 125 TISSRILAALNIDLRKVKNITYRTMGVDATTANRTRKKLALSEKKQDNGTPTL------D 178

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--F 338
            L++DL    R      +P  G+  E  +       +         G P +   ++   F
Sbjct: 179 ELARDLTEMVRKDQI--DPVVGRDNEIKRVVQILSRRTKNNPVL-LGEPGVGKTAVAEGF 235

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLEN-----------DL 386
              + N          R  ++L    L  G    GE E R + ++E            D 
Sbjct: 236 SQKIVNGEVPDNLKNKRV-MMLDMGSLVAGTKYRGEFEDRLKKIIEEIREDGNVILFIDE 294

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  ++               +   +  K    RG+VQ+I AT L    +           
Sbjct: 295 MHTLIG-------AGGAEGAIDASNILKPALARGEVQVIGATTLNEYQKYVE-------- 339

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADIT 503
                  D  + R     +            +K LRP         +    L        
Sbjct: 340 ------ADAALERRFASVTINEPTPEVALTILKGLRPKYEKHHQLQITDEALESAVKLSK 393

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
               S       +D++     ++      +     +IK   ++  + K        F  A
Sbjct: 394 RYIASRFLPDKAIDLMDEAAARVRINNSQKVDKVSAIKKKLSELSQEKTEALLKEDFEKA 453

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYEN--VPYL-ESIQD 601
              ++        +  +   D +  +  N  V    E I +
Sbjct: 454 AEIRNEELKIQEKLEKQIQRDKDEEDSNNYRVKVTAEDIAE 494


>gi|259500957|ref|ZP_05743859.1| type II restriction enzyme [Lactobacillus iners DSM 13335]
 gi|302190592|ref|ZP_07266846.1| putative restriction type II methylase [Lactobacillus iners AB-1]
 gi|309806494|ref|ZP_07700498.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
 gi|259167651|gb|EEW52146.1| type II restriction enzyme [Lactobacillus iners DSM 13335]
 gi|308167093|gb|EFO69268.1| conserved hypothetical protein [Lactobacillus iners LactinV 03V1-b]
          Length = 906

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 38/147 (25%), Gaps = 39/147 (26%)

Query: 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQEL 247
              DP CG+G FL      +                                   +G E+
Sbjct: 340 KFMDPACGSGNFLIVTYKQLRQLEIDILKEQNKILAEEGSGKAMMYLPSVTLDQFYGIEI 399

Query: 248 EP---ETHAVCV------AGMLIRRLESDPRR-----DLSKNIQQGSTLSKDL-----FT 288
           +    +T  + +        + +R   ++  R       +  I  G+ L  D        
Sbjct: 400 DDFACDTTRLSLWIAEHQMNIKLRDEINNAVRPTLPLQHAGAIVCGNALRLDWEKILPHK 459

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKE 315
                Y   NPP+       +    KE
Sbjct: 460 KDDEVYLFGNPPYLGSHGAKQKKTHKE 486


>gi|144922638|ref|NP_032503.2| kinectin [Mus musculus]
 gi|162318604|gb|AAI56558.1| Kinectin 1 [synthetic construct]
 gi|225001016|gb|AAI72712.1| Kinectin 1 [synthetic construct]
          Length = 1327

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 2/161 (1%)

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            N +    + KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S     
Sbjct: 480 KNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKL 539

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPY 529
                 + ++ + L M  +  +   A  E  +  +    L Q+  L   ++    QI   
Sbjct: 540 TDTLVSKQQLEQRL-MQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQ 598

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             A    +E  K    K  ++K ++  +    +    K+  
Sbjct: 599 TSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEE 639


>gi|81862978|sp|Q61595|KTN1_MOUSE RecName: Full=Kinectin
 gi|887380|gb|AAB65839.1| kinectin [Mus musculus]
          Length = 1327

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 2/161 (1%)

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            N +    + KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S     
Sbjct: 480 KNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKL 539

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPY 529
                 + ++ + L M  +  +   A  E  +  +    L Q+  L   ++    QI   
Sbjct: 540 TDTLVSKQQLEQRL-MQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQ 598

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             A    +E  K    K  ++K ++  +    +    K+  
Sbjct: 599 TSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEE 639


>gi|301308913|ref|ZP_07214863.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300833103|gb|EFK63723.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1820

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 22/142 (15%)

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   +SN PFG     D    + E +  +   FG    + +  +  FL     K   
Sbjct: 70  NNYFDLAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLD 117

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIAT 405
               GG  A + S   L      S ++ +R  L     + + + LP +LF     T + +
Sbjct: 118 AVRDGGIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGS 172

Query: 406 YLWILSNR--KTEERRGKVQLI 425
            L +L     K E  + +  + 
Sbjct: 173 DLIVLQKNLSKKEMSQDERLMT 194


>gi|301312460|ref|ZP_07218375.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300829549|gb|EFK60204.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1820

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 22/142 (15%)

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
              F   +SN PFG     D    + E +  +   FG    + +  +  FL     K   
Sbjct: 69  NNYFDLAVSNIPFG-----DIAVFDAEFQRSDS--FGRRSAQKTIHNYFFL-----KGLD 116

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIAT 405
               GG  A + S   L      S ++ +R  L     + + + LP +LF     T + +
Sbjct: 117 AVRDGGIVAFITSQGVL-----NSTKTSVRNELFSQANLVSAIRLPNNLFTDNAGTEVGS 171

Query: 406 YLWILSNR--KTEERRGKVQLI 425
            L +L     K E  + +  + 
Sbjct: 172 DLIVLQKNLSKKEMSQDERLMT 193


>gi|229829842|ref|ZP_04455911.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
 gi|229791140|gb|EEP27254.1| hypothetical protein GCWU000342_01948 [Shuttleworthia satelles DSM
            14600]
          Length = 2869

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 70/248 (28%), Gaps = 59/248 (23%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ V+        D       +       + +P+ G G       N + +       
Sbjct: 1197 FYTPKTVI--------DGVYKTLLDMGFKQGNILEPSMGIG-------NFIGNIPDEMNK 1241

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 1242 SK---FYGVELDSVSGRIGKL----------LYPESDIQIKG---LEETSFSNNFFDAII 1285

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1286 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGVI 1325

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1326 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1380

Query: 414  KTEERRGK 421
             +   R +
Sbjct: 1381 DSIRERDE 1388


>gi|194015699|ref|ZP_03054315.1| gp42 [Bacillus pumilus ATCC 7061]
 gi|194013103|gb|EDW22669.1| gp42 [Bacillus pumilus ATCC 7061]
          Length = 249

 Score = 38.4 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 11/153 (7%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA-DC 230
           +  +   TPR V  L   +     +           T YD   GTGG           + 
Sbjct: 68  KTKKQDFTPRSVADLLARVTDGGLE---------STTSYDGCAGTGGLTIAKWQSDRINH 118

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES-DPRRDLSKNIQQGSTLSKDLFTG 289
                 P     H +E+        +  +L R + +     D+     +G+   ++    
Sbjct: 119 SPFDYKPSWYFYHCEEMSDRAIPFLLFNLLFRGMNAVVVHCDVLTRKSKGAFFIQNDHDD 178

Query: 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                 L+  P+     ++ D    +       
Sbjct: 179 FMHFSALNVLPYTDFTAEELDVTWDDDLIPYDD 211


>gi|159038638|ref|YP_001537891.1| hypothetical protein Sare_3087 [Salinispora arenicola CNS-205]
 gi|157917473|gb|ABV98900.1| conserved hypothetical protein [Salinispora arenicola CNS-205]
          Length = 1572

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 44/135 (32%), Gaps = 16/135 (11%)

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGM----IRTLYDPTCGTG 217
            + R      + +  + TP  +        L+                  T+ +P  G+G
Sbjct: 521 FVFRLAGRERQQSASYYTPEVLTKFTVGQALEELLDQNGVRTPAADILGMTICEPALGSG 580

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH--AV--CVAGMLIR---RLESDPRR 270
            F  +A+  +A+     +    L   G+ ++P+ +   +    A + +     ++ +   
Sbjct: 581 AFAIEAVRQLAEQYLKRRKE-ELADEGKTIDPDDYPKRLQEVKAYLALHNVYGVDLNATA 639

Query: 271 DLSKNIQQGSTLSKD 285
                I    TL  D
Sbjct: 640 VELAEI----TLWLD 650


>gi|159898126|ref|YP_001544373.1| RND family efflux transporter MFP subunit [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891165|gb|ABX04245.1| efflux transporter, RND family, MFP subunit [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 641

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 5/183 (2%)

Query: 410 LSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS--RENGKFSRM 467
           L            Q   +   W +   +G  ++  +D   +  +D Y +  R+       
Sbjct: 246 LDRDTAANAVRNAQTSLSQVYWETHDADGNWKKKPDDFGYQTDVDRYNNAVRDEQDAQTK 305

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLH---QSFWLDILKPMMQ 524
           LD     Y        L ++    K   A ++     +  + L        LD  K  + 
Sbjct: 306 LDAAQLAYDNAVTQEGLDIANAEAKVRDAEVQLQTVLKGATALEITQAEAALDQAKANLD 365

Query: 525 QIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGEWIPD 584
           ++   G A+         ++AK    K ++    A + A      +A+   D       D
Sbjct: 366 KLKQGGTADDVAAAQANLDQAKANLRKLTQGGTAADVAAARANVDQAEANLDKLTAPPTD 425

Query: 585 TNL 587
           T+L
Sbjct: 426 TDL 428


>gi|297695163|ref|XP_002824835.1| PREDICTED: kinectin-like [Pongo abelii]
          Length = 1335

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 61/161 (37%), Gaps = 2/161 (1%)

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            N +    + KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S     
Sbjct: 455 KNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKL 514

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPY 529
                 + ++ + L      ++  + + E  +  +    L Q+  L   ++    QI   
Sbjct: 515 TDTLVSKQQLEQRLMQLMESEQKRVNK-EESLQMQVQDILEQNEALKAQIQQFHSQIAAQ 573

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             A    +E  K    K  ++K ++  +    +    K+  
Sbjct: 574 TSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEE 614


>gi|149023613|ref|ZP_01836116.1| hypothetical protein CGSSp23BS72_04265 [Streptococcus pneumoniae
           SP23-BS72]
 gi|225855534|ref|YP_002737046.1| adenine-specific DNA methylase [Streptococcus pneumoniae JJA]
 gi|147929712|gb|EDK80703.1| hypothetical protein CGSSp23BS72_04265 [Streptococcus pneumoniae
           SP23-BS72]
 gi|225723809|gb|ACO19662.1| adenine-specific DNA methylase [Streptococcus pneumoniae JJA]
 gi|332071758|gb|EGI82250.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA17545]
 gi|332199476|gb|EGJ13552.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA47901]
          Length = 317

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSNLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 264 LFANAKQSKTIFILQKK 280


>gi|289548685|ref|YP_003473673.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermocrinis albus DSM 14484]
 gi|289182302|gb|ADC89546.1| protein-(glutamine-N5) methyltransferase, release factor-specific
           [Thermocrinis albus DSM 14484]
          Length = 270

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 40/206 (19%)

Query: 112 KAIFEDFDFSSTIARLEKAGLLYKICKN--------------FSGIELHPDTVPDRVMSN 157
             + E  +    +++ EK  LL  I +               F+ +E +   +       
Sbjct: 1   MKVLELLNLHPKVSKREKHLLLAHILQVTPSDLYLMEDYEVPFNEVERYISMLSRLEEGY 60

Query: 158 IYEHLIRR--FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215
             ++L+    F     +  E  + PR    L    +L     + K+ P     +     G
Sbjct: 61  PLQYLLGEWEFYGRTFKVEEGVLIPRPETELLVEKILT---TVNKDRPLKGFEIG---VG 114

Query: 216 TGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           TG      +  +          P LV +  ++ P+   +      + +++          
Sbjct: 115 TGCISVTLLLEI----------PSLVMYADDVNPKALQLAYQNACMHQVQDRLYLMEG-- 162

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPF 301
                +L + +  G RFH  +SNPP+
Sbjct: 163 -----SLFEPV-RGMRFHLVVSNPPY 182


>gi|240147717|ref|ZP_04746318.1| SNF2 family protein [Roseburia intestinalis L1-82]
 gi|257200073|gb|EEU98357.1| SNF2 family protein [Roseburia intestinalis L1-82]
          Length = 171

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 39/142 (27%), Gaps = 30/142 (21%)

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           +   F   + N PFG     D    +   +  +                        K  
Sbjct: 2   SDNFFDVVVGNVPFGDYKVFDPKYNKYNFRIHDY--------------------FLAKAL 41

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
                GG  A++ +   L           IR++L E   +   V LP   F     T + 
Sbjct: 42  DQVRPGGMVAVITTKGTLDKANPA-----IRKYLAERAELVGAVRLPNTAFKDNAGTEVT 96

Query: 405 TYLWILSN--RKTEERRGKVQL 424
             +  L    RK +     V L
Sbjct: 97  ADILFLQKRERKIDIEPDWVHL 118


>gi|53713270|ref|YP_099262.1| helicase domain-containing protein [Bacteroides fragilis YCH46]
 gi|52216135|dbj|BAD48728.1| helicase domain protein [Bacteroides fragilis YCH46]
          Length = 1633

 Score = 38.4 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 80/290 (27%), Gaps = 43/290 (14%)

Query: 135  KICKNF-SGIELHPDTVPDRV-----MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188
            +I + F   +    D + +       +  +Y+   +    ++ E      TP +VV    
Sbjct: 824  EILEKFYDSVRTRADKIDNAEGKQKVIIELYDKFFKTAFPKMVERLGIVYTPVEVVDFII 883

Query: 189  ALL-LDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
              +         +        + DP  GTG F+T  +          +       H  EL
Sbjct: 884  HSVDAVLRKEFNRSLSDENIHILDPFTGTGTFITRLLQSGLISTEDLEHKYSKEIHANEL 943

Query: 248  EPETHAVCVAGM--LIRRLESDPRRDLSKN-IQQGSTL-------SKDLFTGK------- 290
                + +    +      L          N I    T        S+ LF+         
Sbjct: 944  VLLAYYIAAVNIENTFHDLMKGQSEYKEFNGICLTDTFQLGESDASEKLFSEMFPQNSER 1003

Query: 291  -------RFHYCLSNPPFGKKWE----KDKDAVEKEHKNGELGRFGPGLPKISDGSM--L 337
                        + NPP+    +      ++    +        +  G    S  ++   
Sbjct: 1004 VIEQKKAPLRVIMGNPPYSIGQKSANDNAQNQSYAKLDAKIASTYAKGSSATSVKALYDS 1063

Query: 338  FLMHLANKL-ELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386
            ++         L P  GG  A V + + +      S     R+ L E D 
Sbjct: 1064 YIKAFRWSTDRLDPKNGGVIAFVSNGAWIDGNGMDS----FRKCL-EKDF 1108


>gi|49483953|ref|YP_041177.1| hypothetical protein SAR1790 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282904282|ref|ZP_06312170.1| putative adenine-specific DNA methylase [Staphylococcus aureus
           subsp. aureus C160]
 gi|282906107|ref|ZP_06313962.1| site-specific DNA-methyltransferase adenine-specific
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909022|ref|ZP_06316840.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283958462|ref|ZP_06375913.1| putative adenine-specific DNA methylase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|49242082|emb|CAG40781.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282327286|gb|EFB57581.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282331399|gb|EFB60913.1| site-specific DNA-methyltransferase adenine-specific
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595900|gb|EFC00864.1| putative adenine-specific DNA methylase [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790611|gb|EFC29428.1| putative adenine-specific DNA methylase [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|315195616|gb|EFU26003.1| hypothetical protein CGSSa00_08115 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 315

 Score = 38.4 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 86/297 (28%), Gaps = 49/297 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
            Y  L++    + +      +TP  +  +   L+          +      + D   GTG
Sbjct: 64  AYLSLMQEEKIQANHQ----ITPDSIGLILGFLV------ERFMNNQEELHIVDIASGTG 113

Query: 218 GFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ 277
                    + +         +      +      +V +A  L          ++  ++ 
Sbjct: 114 HLSATVKEVLPEIA------VMHHLIEVDPVLSRVSVHLANFL----------EIPFDVY 157

Query: 278 QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML 337
               +       +     + + P G            E        F  G    S    L
Sbjct: 158 PQDAIMP--LPLEEADIVIGDFPVGY-------YPIDERSRDFKLGFEEGH---SYSHYL 205

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
            +    N L+         A ++  S +F G       ++ +++     ++A + LP  L
Sbjct: 206 LIEQAINALKDAGY-----AFLVVPSNIFTGE---HVKQLEKYIATETEMQAFLNLPPTL 257

Query: 398 FFRTNIATYLWILSNRKTEERRG-KVQLINATDLWTSIRNEGKKR--RIINDDQRRQ 451
           F        + IL  +K+ E +  +V L N  D     + +G         D  R +
Sbjct: 258 FKNEKARKSILILQKKKSGETKSVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPK 314


>gi|294850453|ref|ZP_06791183.1| conserved hypothetical protein [Staphylococcus aureus A9754]
 gi|294850682|ref|ZP_06791404.1| conserved hypothetical protein [Staphylococcus aureus A9754]
 gi|294822480|gb|EFG38927.1| conserved hypothetical protein [Staphylococcus aureus A9754]
 gi|294822656|gb|EFG39095.1| conserved hypothetical protein [Staphylococcus aureus A9754]
          Length = 115

 Score = 38.4 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRT 472
           K  ++   V  I+A++ +      GK +  ++D Q  +I+D Y  +E   K+S     + 
Sbjct: 1   KCRQQDDNVLFIDASNDFEK----GKNQNHLSDAQVERIIDTYKRKETIDKYSYSATLQE 56

Query: 473 FGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGW 531
                  +  P R     ++     L+      K      +     +   ++++     
Sbjct: 57  IADNDYNLNIP-RYVDTFEEEAPIDLDQVQQDLKNIDKEIAEIEQEINAYLKELGVLKD 114


>gi|169825485|ref|YP_001695660.1| putative helicase [Lysinibacillus sphaericus C3-41]
 gi|168994762|gb|ACA42301.1| putative helicase [Lysinibacillus sphaericus C3-41]
          Length = 998

 Score = 38.4 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 109/408 (26%), Gaps = 75/408 (18%)

Query: 166 FGSEVSE-GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
           F     E     F TP  +       L           P     + D T G G F     
Sbjct: 65  FSEAKKEIENGQFFTPALLAKYLVECL----------KPTEYELIADLTSGMGSFFNYLP 114

Query: 225 NHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284
           N +               +G E++ +   V                  +++I+       
Sbjct: 115 NEL-------------NIYGNEIDLKAFKVSR-------FLYPSANLTNQDIRY------ 148

Query: 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLAN 344
              +  +F   L NPPF  +W+                        ++D   +  ++   
Sbjct: 149 -YKSEVQFDIVLGNPPFNLQWQ------------------------VNDNKYVSQLYYCI 183

Query: 345 KLELPPNGGGRAAIVLSSSPL---FNGRAGSGESEIRRWLLENDLI--EAIVALPTDLFF 399
           K       GG  A+++  S L   F       E +     +   LI  +A  +L      
Sbjct: 184 KAHEVLKAGGLMALIVPKSFLADDFTDGGMIAEIDHMFDFIGQTLISKDAFSSLGV---- 239

Query: 400 RTNIATYLWILSNRKTEERRGKVQ---LINATDLWTSIRNEGKKRRIINDDQRRQILDIY 456
            T+  T +     R    ++   +    I+ +D      N  K  +   +  R +I    
Sbjct: 240 -TSYETKIMFFQKRSEHLQQRPYKSNEFISVSDASDIHENIIKPVKHQLEAVRAKIQLEN 298

Query: 457 VSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWL 516
               N ++    +   F  +R   L+    + +     L   E            +    
Sbjct: 299 RRSLNSEYEYKKNKLLFDIKRNPKLQKHYANCLAYAERLHTQEKPNNMDDKEWQQKKVTE 358

Query: 517 DILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAF 564
           + +   ++Q           +          L+ KA        + A 
Sbjct: 359 NRVISYLKQALQKQHRTEETRTMTLVKTKYGLQYKAYTPNDKKQLKAL 406


>gi|187734740|ref|YP_001876852.1| hypothetical protein Amuc_0228 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424792|gb|ACD04071.1| hypothetical protein Amuc_0228 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 652

 Score = 38.4 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 74/260 (28%), Gaps = 44/260 (16%)

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---------T 208
           + E L+ RF ++    +    TP  +V       +         SP              
Sbjct: 36  VLEGLLGRFLTDA-RRSGTVYTPGFLVRWMAREAVSSWLESRLPSPRSGDEEAGLLGSIR 94

Query: 209 LYDPTCGTGGF-------LTDAMNHVADCGSH---HKIPPILVPHGQELEPETHAVCVAG 258
           + D + G G F       L      +          +       +G ++  E   V    
Sbjct: 95  VLDLSVGAGAFTMGMLRELVARRKLLEPDCPEPDLIRAVLEENIYGVDVCAEALEVARFR 154

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDL-----------FTGKRFHYCLSNPPFGKKWEK 307
                L +  + DL   +  G +L                    F   + NPPF      
Sbjct: 155 FRCAWLAAGGKGDLRDRLLCGDSLDMSASGVWRQGLSTVMEEGGFDLVIGNPPF-----V 209

Query: 308 DKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367
            +   ++     +            D   +F     + L+     GG   +V+ +  + N
Sbjct: 210 GEKGNKELFDRLKCSSLASYCSSRMDYWYVFACVGLDALK----RGGVMHLVVPNKWMSN 265

Query: 368 GRAGSGESEIRRWLLENDLI 387
             A S    +RR LLE+  +
Sbjct: 266 AGAAS----LRRKLLEDCGL 281


>gi|169237286|ref|YP_001690492.1| putative restriction/modification enzyme [Halobacterium salinarum
           R1]
 gi|169237329|ref|YP_001690534.1| putative restriction/modification enzyme [Halobacterium salinarum
           R1]
 gi|167728352|emb|CAP15156.1| putative restriction/modification enzyme [Halobacterium salinarum
           R1]
 gi|167728845|emb|CAP15737.1| putative restriction/modification enzyme [Halobacterium salinarum
           R1]
          Length = 1394

 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 43/154 (27%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPG-------------------MIRTLYDP 212
           +    + TP  VV       L+P     +                           + DP
Sbjct: 480 KATGSYYTPEYVVEYIVENTLEPLVDDIRADLAGRSARGEDRGFAEEFAERIFDLKILDP 539

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPP-----------------------ILVPHGQELEP 249
             G+G FLT A++++A      +                              +G +L P
Sbjct: 540 AMGSGHFLTSAIDYLAREIIDAQERQAAQQGIETVNQDHDINWARRQVAQRCIYGVDLNP 599

Query: 250 ETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTL 282
               +    + +R L ++ P   L  +++ G++L
Sbjct: 600 LAVELAKVSLWLRTLAAEQPLAFLDHHLKTGNSL 633


>gi|126697994|ref|YP_001086891.1| putative helicase [Clostridium difficile 630]
 gi|115249431|emb|CAJ67246.1| putative DNA/RNA helicase Tn1549-like,CTn2-Orf18 [Clostridium
            difficile]
          Length = 2907

 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 59/257 (22%)

Query: 177  FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKI 236
            F TP+ ++        D       +       + +P+ G G       N + +       
Sbjct: 1177 FYTPKTII--------DGIYKTLSDMGFKQGNILEPSMGIG-------NFIGNIPDEMNK 1221

Query: 237  PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                  +G EL+  +  +                +    I+    L +  F+   F   +
Sbjct: 1222 SK---FYGVELDSVSGRIGKL----------LYPESEVQIKG---LEETSFSNNFFDAVI 1265

Query: 297  SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRA 356
             N PFG+    D++  +      +                        K       GG  
Sbjct: 1266 GNVPFGEYKVNDREYNKNNFLIHDY--------------------FFAKSIDKVRNGGII 1305

Query: 357  AIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
            A +       +G     +  +RR+L         + LP D F     T + + +  L  R
Sbjct: 1306 AFIT-----SSGTMDKKDESVRRYLAARAEFLGAIRLPNDTFKGVAGTEVTSDIIFLKKR 1360

Query: 414  KTEERRGKVQLINATDL 430
             +   R +  +  A D 
Sbjct: 1361 DSIRERDEDWIHLAEDE 1377


>gi|299535446|ref|ZP_07048768.1| hypothetical protein BFZC1_05478 [Lysinibacillus fusiformis ZC1]
 gi|298729207|gb|EFI69760.1| hypothetical protein BFZC1_05478 [Lysinibacillus fusiformis ZC1]
          Length = 309

 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           LF+    N  +            L+ + LF         ++ +++ ++  I+AI+ LP  
Sbjct: 203 LFIEQSMNYTKDGGYL-----FFLAPAHLFESEQS---KQLHKYIQKHAWIQAIIQLPDS 254

Query: 397 LFFRTNIATYLWILSNR-KTEERRGKVQLINATDL 430
           +F   ++   + IL  + K  +   +V L    ++
Sbjct: 255 MFANKSLEKSIVILQKQSKELKAPKEVLLAKVPNM 289


>gi|260170369|ref|ZP_05756781.1| N-6 DNA methylase [Bacteroides sp. D2]
 gi|315918728|ref|ZP_07914968.1| restriction endonuclease BseMII [Bacteroides sp. D2]
 gi|313692603|gb|EFS29438.1| restriction endonuclease BseMII [Bacteroides sp. D2]
          Length = 926

 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 60/419 (14%), Positives = 127/419 (30%), Gaps = 64/419 (15%)

Query: 39  TLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSF-----------------Y 81
            +L  ++   E  +  +  K  A   + ID       A Y F                  
Sbjct: 174 IVLENIDSTAENIKENI--KRNAILDAQIDNWWLSSAAEYGFNPQTKKDVKHKLPTLSKV 231

Query: 82  NTSEYSLSTLGSTNTRNNLESY-------IASFSDNAKAIFEDF----DFSSTIARLEKA 130
             +++    +     + +             +    A+ I        +F +        
Sbjct: 232 ILTDWFFKIIFGNIIKRHFNEAKIIETITFDTTVSEAQQIIAKISKLCNFGNIFGDNIAN 291

Query: 131 GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEV-----SEGAEDFMTPRDVVH 185
            L+      +  +      + +  + ++   +++            + A  F TP  +  
Sbjct: 292 ELISD--NVWKQLVQLNLFISNIKIESVDIQILQNLLQSSIDYAKRKVAGQFATPPQLAD 349

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM--NHVADCGSHHKIPPILVPH 243
           L T + ++  + +            DP CGTG  +  A       + G    I  I    
Sbjct: 350 LLTRITINNKNGIT----------LDPCCGTGTIIKQAYSLKEEYEIGQDQIIESIWASD 399

Query: 244 GQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR-------FHYCL 296
                 +   + ++         +  R    ++  G T  ++   G +         Y +
Sbjct: 400 KYSFPIQLSTLSLSNPNNMGKTLNIFRSDVIDLHMGQTAFEEHNNGNQVEKKLPYVDYVV 459

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGR 355
           SN PF  + ++ K       K  EL +         S  S +F  ++   L    +  GR
Sbjct: 460 SNLPF-IREKEIKKLNPNIGKINELIKEQTKAKNTLSKKSDIF-AYIPFYLYNIISNNGR 517

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD-LFFRTNIATYLWILSNR 413
             ++LS++ L       GE  + + + +   I+ +V       F    + T L I + R
Sbjct: 518 IGLILSNAWL---GTDYGEIFL-KLIQKYFNIDRVVVSGNGRWFNNAKVVTTLLIATKR 572


>gi|258507989|ref|YP_003170740.1| adenine-specific DNA methylase [Lactobacillus rhamnosus GG]
 gi|257147916|emb|CAR86889.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus GG]
 gi|259649315|dbj|BAI41477.1| DNA methylase [Lactobacillus rhamnosus GG]
          Length = 337

 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 96/337 (28%), Gaps = 51/337 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ST+     E+     S               +   E    L  +          P+
Sbjct: 22  QQLKSTDIAAITEAGEDLSSGEVMQ-------EDGLPNDEAKKKLEALFGQVKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT +       +F +       
Sbjct: 75  -----EIRQALQLVLVKAIKVDGIEPNKQITPDAMASLATFMAT-----VFDQQQPSQLK 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   G+G  L   MN +     H +    +  +G + +    AV      ++ L+ + 
Sbjct: 125 VADLAVGSGNLLFAVMNQL-----HKERDVTVKGYGVDNDEALLAVAGMSSSLQHLDVEL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                        L  D    K     +S+ P G     ++                   
Sbjct: 180 F--------HQDAL--DGLLFKDIDVVVSDLPVGYYPVDERAKKFATAAKKGH------- 222

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                 S    + +   +++   GG    +    S +F     +G +    WL E    +
Sbjct: 223 ------SYAHHLLIEQSMKVLKPGG--LGMFYVPSRVFQSEEAAGLTA---WLAEKTYFQ 271

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQL 424
            ++ LP D F        L IL     + +R K V L
Sbjct: 272 GLLNLPDDFFADKQAEKSLLILQKPSADVKRAKQVLL 308


>gi|227891885|ref|ZP_04009690.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactobacillus
           salivarius ATCC 11741]
 gi|227866348|gb|EEJ73769.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactobacillus
           salivarius ATCC 11741]
          Length = 832

 Score = 38.4 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 106/401 (26%), Gaps = 51/401 (12%)

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T +   +A      +    +      ++  T       + +   + D             
Sbjct: 125 TISSRILAALNIDLRKVKNITYRTMGVDATTANRTRKKLALSEKKQDNGTPTL------D 178

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--F 338
            L++DL    R      +P  G+  E  +       +         G P +   ++   F
Sbjct: 179 ELARDLTEMVRKDQI--DPVVGRDNEIKRVVQILSRRTKNNPVL-LGEPGVGKTAVAEGF 235

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLEN-----------DL 386
              + N          R  ++L    L  G    GE E R + ++E            D 
Sbjct: 236 SQKIVNGEVPDNLKNKRV-MMLDMGSLVAGTKYRGEFEDRLKKIIEEIREDGNVILFIDE 294

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  ++               +   +  K    RG+VQ+I AT L    +           
Sbjct: 295 MHTLIG-------AGGAEGAIDASNILKPALARGEVQVIGATTLNEYQKYVE-------- 339

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADIT 503
                  D  + R     +            +K LRP         +    L        
Sbjct: 340 ------ADAALERRFASVTINEPTPEVALTILKGLRPKYEKHHQLQITDEALESAVKLSK 393

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
               S       +D++     ++      +     +IK   ++  + K        F  A
Sbjct: 394 RYIASRFLPDKAIDLMDEAAARVRINNAQKVDKVSAIKKKLSELSQEKTEALLKEDFEKA 453

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYEN--VPYL-ESIQD 601
              ++        +  +   D +  +  N  V    E I +
Sbjct: 454 AEIRNEELKIQEKLEKQIQRDKDEEDSNNYRVKVTAEDIAE 494


>gi|298376863|ref|ZP_06986818.1| DNA methylase [Bacteroides sp. 3_1_19]
 gi|298266741|gb|EFI08399.1| DNA methylase [Bacteroides sp. 3_1_19]
          Length = 1926

 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 72/245 (29%), Gaps = 57/245 (23%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG----SMLFLMHLANKLELPPN 351
           +SN PFG     D    + E    +         + S      +  FL +L         
Sbjct: 194 VSNIPFG-----DVAVFDPEFSGSKDP------ARHSAARTIHNYFFLKNL-----DAVR 237

Query: 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLW 408
            GG  A + S   L         + IR +++ +  +  +  LP +LF     T + + L 
Sbjct: 238 EGGIVAFITSQGVL----DAPTNAPIREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLI 293

Query: 409 ILSNR 413
           IL   
Sbjct: 294 ILQKN 298


>gi|309803717|ref|ZP_07697803.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d]
 gi|308164126|gb|EFO66387.1| conserved hypothetical protein [Lactobacillus iners LactinV 11V1-d]
          Length = 693

 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 50/201 (24%), Gaps = 52/201 (25%)

Query: 167 GSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIRT------------LYDPT 213
             +         T    ++ +   L LD     F +  G  +               DP 
Sbjct: 286 SEDSRSHLGMHYTSVPNIMKVIKPLFLDELRNEFDKRKGSYKKLQHLYERIGKIKFMDPA 345

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPI--------------------LVPHGQELEP---E 250
           CG+G FL      +                                   +G E++    +
Sbjct: 346 CGSGNFLIVTYKQLRQLEIDILKEQNKILAEEGSGKAMMYLPSVTLDQFYGIEIDDFACD 405

Query: 251 THAVCV------AGMLIRRLESDPRR-----DLSKNIQQGSTLSKDL-----FTGKRFHY 294
           T  + +        + +R   ++  R       +  I  G+ L  D             Y
Sbjct: 406 TTRLSLWIAEHQMNIKLRDEINNAVRPTLPLQHAGAIVCGNALRLDWEKILPHKKDDEVY 465

Query: 295 CLSNPPFGKKWEKDKDAVEKE 315
              NPP+       +    KE
Sbjct: 466 LFGNPPYLGSHGAKQKKTHKE 486


>gi|298254935|ref|ZP_06978521.1| Snf2 family protein [Streptococcus pneumoniae str. Canada MDR_19A]
          Length = 1203

 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337  LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
            L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 1098 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 1149

Query: 397  LFFRTNIATYLWILSNR 413
            LF     +  ++IL  +
Sbjct: 1150 LFANAKQSKTIFILQKK 1166


>gi|195113407|ref|XP_002001259.1| GI10687 [Drosophila mojavensis]
 gi|193917853|gb|EDW16720.1| GI10687 [Drosophila mojavensis]
          Length = 491

 Score = 38.4 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 142 GIELHPDTVPDRVMSNIYEH----LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDA 197
                P    D +   +  H    LI++   +  +   +      +  L     L  D  
Sbjct: 155 DPTAVPAEPEDILFGRMLVHGQRHLIKQLSLKQRKFIGNTSMDAQLSLLMANQALVRDGD 214

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
           L          ++DP  GTG  L  A               ++    +            
Sbjct: 215 L----------VFDPFVGTGSLLVSAAKFGGYVLGADIDFMMVHARCRPSRITQKVRDKD 264

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLSKD-LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             +   L+     +   ++      S         F   +++PP+G +   +K   +   
Sbjct: 265 ESIRANLQQYGCANRYMDVLVAD-FSNPLWHRRITFDSIITDPPYGIREATEKVETKVNP 323

Query: 317 KNGELGRFGPGLPKISDGSMLFL-MHLANKLELPPNGGGRAAIVLS 361
           K+          P  S  ++  L   L          GGR    L 
Sbjct: 324 KDNTRTADMAHYPSTSHYALHHLYADLLEFGATHLKLGGRLVCWLP 369


>gi|297526451|ref|YP_003668475.1| N-6 DNA methylase [Staphylothermus hellenicus DSM 12710]
 gi|297255367|gb|ADI31576.1| N-6 DNA methylase [Staphylothermus hellenicus DSM 12710]
          Length = 384

 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG------SMLFLMHL 342
            K+F   + NPPF K   K+     K++    +      LP+             F++  
Sbjct: 89  EKKFDLIIGNPPFTKYNIKESYFYPKKYFQSPIHPRKY-LPRKLLKKEKIRIENAFILKS 147

Query: 343 ANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTN 402
              L+           VL +S    G+         + ++  +    IV           
Sbjct: 148 IKHLKDK---NSTIGFVLPASFFIEGKNLET-----KKVIAENFKTIIVYQNEGKMVDEP 199

Query: 403 IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENG 462
           I     I +N K  E   K+ LI   +    ++    K +++ D+   +    Y  R+N 
Sbjct: 200 IPCVFAIFTNIKEFE--NKILLIYENNEKKVVKEVLDKEKLLTDEIIPK---TYFYRKNN 254

Query: 463 K 463
            
Sbjct: 255 D 255


>gi|14521822|ref|NP_127298.1| hypothetical protein PAB1283 [Pyrococcus abyssi GE5]
 gi|5459042|emb|CAB50528.1| Methylase, puative RNA modification protein [Pyrococcus abyssi GE5]
          Length = 332

 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 30/126 (23%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R + DP  GTGG L +A                
Sbjct: 169 PPRIARAMVNL------------TRATREILDPFMGTGGMLIEAG------------LMG 204

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  K+ F GK F    ++P
Sbjct: 205 LKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDA------TKIKEAFPGKTFEAIATDP 258

Query: 300 PFGKKW 305
           P+G   
Sbjct: 259 PYGTST 264


>gi|307701808|ref|ZP_07638822.1| Eco57I restriction endonuclease [Mobiluncus mulieris FB024-16]
 gi|307613066|gb|EFN92321.1| Eco57I restriction endonuclease [Mobiluncus mulieris FB024-16]
          Length = 498

 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 14/162 (8%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIARMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                    K+F   + NPP+GK   KD   +    +  +  
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRIAMRSRGEDAP 169


>gi|307277424|ref|ZP_07558517.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
 gi|306505913|gb|EFM75090.1| N-6 DNA Methylase [Enterococcus faecalis TX2134]
          Length = 2266

 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 68/243 (27%), Gaps = 51/243 (20%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPPEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                          +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHDY---------------------FIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
           A       R+ L     +   V LP   F     T + T +         + + + QL+ 
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKHSGIQEQAEEQLLE 923

Query: 427 ATD 429
              
Sbjct: 924 RRQ 926


>gi|126732625|ref|ZP_01748422.1| hypothetical protein SSE37_25258 [Sagittula stellata E-37]
 gi|126706909|gb|EBA05978.1| hypothetical protein SSE37_25258 [Sagittula stellata E-37]
          Length = 1131

 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 46/157 (29%), Gaps = 35/157 (22%)

Query: 106 SFSDNAKAIFEDFD--FSSTIARLEKAGL-LYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            FS       + F+         L    L L  + +  +  +     V   +   + E  
Sbjct: 291 GFSQVLMQDLKRFNGGLFRDADALPLNNLQLGLLIEA-AEADW--KQVEPAIFGTLLERA 347

Query: 163 IRRFGSEVSEGAEDFMTPRD-VVHLATALLLDPDDALFKESPGMIR-------------- 207
           + +             TPR  V  L T  +++P    +++    ++              
Sbjct: 348 LDK---RQRHKLGAHYTPRAYVQRLVTPTIIEPLRDDWRDVQTAVQRLTEDGKKDEARKL 404

Query: 208 -----------TLYDPTCGTGGFLTDAMNHVADCGSH 233
                      T+ DP CG+G FL  A+  +      
Sbjct: 405 VADFHAQLCETTVLDPACGSGNFLYVALEMMKRLEGE 441


>gi|256019931|ref|ZP_05433796.1| hypothetical protein ShiD9_13507 [Shigella sp. D9]
          Length = 1092

 Score = 38.4 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 83/254 (32%), Gaps = 36/254 (14%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSD 109
                V           + + ++  ++G  F N  +Y+ S + ++N+ + + +Y+ +  +
Sbjct: 264 DDEYKVLYALQTAYAIIVKIIAYKTLSGLVFEN--DYNFSDMINSNSES-MRNYLYTLEE 320

Query: 110 NAKAIFEDFDFSSTIA-----------------RLEKAGLLYKICKNFSGIELHPDTVPD 152
            A  IF  +   + +                   +    +   + +   G          
Sbjct: 321 GA--IFRKYGILNLLEGDFFSWYCTKEQWGDDIFISIKNIFSLLSEYEEGNLFKEGEKVY 378

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
            +  ++Y ++I     +V     +F TP     LA  L+   ++ +  +S     T  DP
Sbjct: 379 DLFKDLYMNII---PDKVRHSLGEFYTPE---WLAEHLISSAEEHVVNKSN---WTAIDP 429

Query: 213 TCGTGGFLTDA-MNHVADCGSHHKIPPILVPH---GQELEPETHAVCVAGMLIRRLE-SD 267
            CG+G F+       ++   +  K     V     G +L P           I      D
Sbjct: 430 CCGSGTFIITLIGKVLSRTHADSKAKLKDVITSVKGIDLNPLAALTARINYFINISHLLD 489

Query: 268 PRRDLSKNIQQGST 281
              ++   I  G  
Sbjct: 490 DGSEVEIPIYLGDA 503


>gi|329569081|gb|EGG50874.1| helicase protein [Enterococcus faecalis TX1467]
          Length = 2266

 Score = 38.4 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 68/243 (27%), Gaps = 51/243 (20%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPPEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                          +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHDY---------------------FIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
           A       R+ L     +   V LP   F     T + T +         + + + QL+ 
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKHSGIQEQAEEQLLE 923

Query: 427 ATD 429
              
Sbjct: 924 RRQ 926


>gi|327488511|sp|Q9UY84|TMG10_PYRAB RecName: Full=N(2),N(2)-dimethylguanosine tRNA methyltransferase
           Trm-G10; AltName: Full=(Pab)Trm-G10; AltName:
           Full=tRNA:G10 dimethyltransferase
          Length = 329

 Score = 38.0 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 30/126 (23%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R + DP  GTGG L +A                
Sbjct: 166 PPRIARAMVNL------------TRATREILDPFMGTGGMLIEAG------------LMG 201

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  K+ F GK F    ++P
Sbjct: 202 LKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDA------TKIKEAFPGKTFEAIATDP 255

Query: 300 PFGKKW 305
           P+G   
Sbjct: 256 PYGTST 261


>gi|16120087|ref|NP_395675.1| hypothetical protein VNG6135C [Halobacterium sp. NRC-1]
 gi|10584191|gb|AAG20810.1| Vng6135c [Halobacterium sp. NRC-1]
          Length = 662

 Score = 38.0 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 43/154 (27%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPG-------------------MIRTLYDP 212
           +    + TP  VV       L+P     +                           + DP
Sbjct: 436 KATGSYYTPEYVVEYIVENTLEPLVDDIRADLAGRSARGEDRGFAEEFAERIFDLKILDP 495

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPP-----------------------ILVPHGQELEP 249
             G+G FLT A++++A      +                              +G +L P
Sbjct: 496 AMGSGHFLTSAIDYLAREIIDAQERQAAQQGIETVNQDHDINWARRQVAQRCIYGVDLNP 555

Query: 250 ETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTL 282
               +    + +R L ++ P   L  +++ G++L
Sbjct: 556 LAVELAKVSLWLRTLAAEQPLAFLDHHLKTGNSL 589


>gi|332158594|ref|YP_004423873.1| hypothetical protein PNA2_0953 [Pyrococcus sp. NA2]
 gi|331034057|gb|AEC51869.1| hypothetical protein PNA2_0953 [Pyrococcus sp. NA2]
          Length = 316

 Score = 38.0 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 30/126 (23%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R L DP  GTGG L +A                
Sbjct: 154 PPRIARAMVNL------------TRARRELLDPFMGTGGMLIEAG------------LMG 189

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  ++ F GK F    ++P
Sbjct: 190 LKVYGIDIREDMVEGAKINLEYYGVKDYVVKVGDA------TKIEEAFPGKTFEAIATDP 243

Query: 300 PFGKKW 305
           P+G   
Sbjct: 244 PYGTST 249


>gi|150401097|ref|YP_001324863.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
 gi|150013800|gb|ABR56251.1| putative RNA methylase [Methanococcus aeolicus Nankai-3]
          Length = 367

 Score = 38.0 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 79/238 (33%), Gaps = 32/238 (13%)

Query: 87  SLSTLGSTNTRNNLESY---IASFSDNAK--AIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           SL+ L       +  S    +   S   +   I ++ +  S I  ++    +  I KN +
Sbjct: 94  SLNELYEKLNNFDFRSAYPILPEHSFAVRTLKIIQNNNIDSGITSMDIERKVGAIIKNKT 153

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFM---TPRDVVHLATALLLDPDDA- 197
              ++    PD+ +  I    I  F   ++E  +++     P    +     +L      
Sbjct: 154 NSPVNLKN-PDKTIKIIILDNIIYFAILINERNKEYYLKNRPHLRAYFHPGCILPKLARC 212

Query: 198 -LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256
            +          + DP CGTGGFL +                     G +++       +
Sbjct: 213 MVNMAQLKEGDIILDPFCGTGGFLIE------------GGLIGCKLIGSDIDNRMVQGAL 260

Query: 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG----KRFHYCLSNPPFGKKWEKDKD 310
             +     ++    +   +I+Q   L    +      ++    +++PP+G    K  D
Sbjct: 261 LNL-----KTYELDNNVISIKQWDALDAKNYLKSLNIEKVDTIITDPPYGMSTAKKGD 313


>gi|307270190|ref|ZP_07551504.1| hypothetical protein HMPREF9498_02303 [Enterococcus faecalis
           TX4248]
 gi|306513467|gb|EFM82085.1| hypothetical protein HMPREF9498_02303 [Enterococcus faecalis
           TX4248]
          Length = 252

 Score = 38.0 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +   +  TP+ +V     +       + +    +  T  +P  G G FL   +    +  
Sbjct: 13  QKHGEVFTPKRIVKKMLNI-----PEIKEACENLTATFLEPAAGEGAFLLVILERKLNMV 67

Query: 232 SHHKIPPIL-----------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
           S      ++             +G EL  +   +CV  M  +  ++   +    N
Sbjct: 68  SKKYNNDLIQYENYSLLALTTLYGIELLEDNAQICVMNMFQQYYDNYKEQVEHHN 122


>gi|297297911|ref|XP_002805122.1| PREDICTED: kinectin-like [Macaca mulatta]
          Length = 1307

 Score = 38.0 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 2/151 (1%)

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S           + ++
Sbjct: 487 KVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQL 546

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKES 539
            + L      ++  + + E  +  +    L Q+  L   ++    QI     A    +E 
Sbjct: 547 EQRLMQLMESEQKRVNK-EESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 605

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            K    K  ++K ++  +    +    K+  
Sbjct: 606 HKVIAEKDKQIKQTEDSLANERDHLTSKEEE 636


>gi|328676351|gb|AEB27221.1| Eco57I restriction endonuclease [Francisella cf. novicida Fx1]
          Length = 1057

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 62/237 (26%)

Query: 103 YIAS--FSDNAKAIFEDFDFSSTIARLEKAGLLYKICK--NFSGIELHPDT----VPDRV 154
           Y+    F+ + + I  + +      +L +   ++ +    NF+ IE  P+     +   +
Sbjct: 316 YLNGGLFTKDERDIELEKNSIKIEDKLFEK--IFDLFSSYNFTIIEDSPEDVDIAIDPEM 373

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP--------------DDALFK 200
           +  ++E L+     E  +    F TPR++VH      L                   L  
Sbjct: 374 LGKVFEDLL-----EDRKEKGAFYTPREIVHYMCQQSLINYLKGKFDSEENEQDIKDLVL 428

Query: 201 ESPG-----------------MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP----- 238
                                    + DP  G+G F    ++ +       +        
Sbjct: 429 NKKTDNSSFIYNNAGAIINAVKNIKVLDPAIGSGAFPMGMLHEILGVLCSLEKTNFAKKA 488

Query: 239 -------ILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN----IQQGSTLSK 284
                      +G ++E     +      +  +      +   N    I  G++L +
Sbjct: 489 ELKKEIIQNSIYGVDIEESAVEIAKLRFWLSIVVDSDTPEPLPNLFYKIMVGNSLLE 545


>gi|239828042|ref|YP_002950666.1| N-6 DNA methylase [Geobacillus sp. WCH70]
 gi|239808335|gb|ACS25400.1| N-6 DNA methylase [Geobacillus sp. WCH70]
          Length = 329

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 120/370 (32%), Gaps = 53/370 (14%)

Query: 86  YSLSTLGSTNTRNNLE-SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIE 144
           ++L    +   ++ L+ +Y+ + ++  + +F        ++ +  A  L K        +
Sbjct: 9   FTLFDETAKILQDELQCTYLEAVAETGENVFHGDVLQEEVSEV-NAKRLKK-----QYAD 62

Query: 145 LHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPG 204
           +  +   +  +   ++  + +   E        MTP  V    + L+             
Sbjct: 63  IQLERFTNEEIRKAFQLAVLKGMKEY-TQPHHQMTPDAVSLFISYLV------NQFTRQH 115

Query: 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264
           +  T+ DP  GT   LT  +NH+    +          +G +++     +      +++ 
Sbjct: 116 LALTILDPAVGTANLLTTVLNHLKGKQTKS--------YGVDVDDVLIKLAYVNANLQKH 167

Query: 265 ESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
                              + LF           P      +++      + + G     
Sbjct: 168 AIQLFNQDG---------LQPLFVELADVVVCDLPVGYYPHKENASRFALKAEEGH---- 214

Query: 325 GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
                  S    LF+       +     GG    ++ +  LF+       +++  ++ E+
Sbjct: 215 -------SYAHHLFIEQSLYYTKE----GGYLFFLIPN-TLFSSDQA---AKLHEFIKEH 259

Query: 385 DLIEAIVALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL--WTSIRNEGKKR 441
            +I+ ++ LP  +F     A  ++IL  +    +   K  L          +++   +K 
Sbjct: 260 AVIQGLLQLPLSMFKTEQAAKSIFILQKKGENVKAPKKALLAELPRFSNKQAMQAMMRKI 319

Query: 442 RIINDDQRRQ 451
                +++ +
Sbjct: 320 DEWVTEEKGK 329


>gi|161505016|ref|YP_001572128.1| hypothetical protein SARI_03146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866363|gb|ABX22986.1| hypothetical protein SARI_03146 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 526

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 35/192 (18%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231
           +    F TP+ ++      L        K        + +P+ G G F+    +H+    
Sbjct: 3   KEFGVFYTPKFLIDFIINKL------PIKNIKKQSVNVLEPSAGDGRFI----DHLLRKN 52

Query: 232 SHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKR 291
               +   LV    E+  E+ ++            + +    + I+  ++      + K+
Sbjct: 53  PRIVVDASLV----EINKESASL-----------LEDKFINQEKIRVINSDFLYYESIKK 97

Query: 292 FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM--LFLMHLANKLELP 349
           F   + NPP+  K    ++ +E+  +          +P ++D ++   F++   + L   
Sbjct: 98  FDVIVGNPPYISKKHLTRNQIERCREILS----AASIPSLADKNIWTSFIVRCTSML--- 150

Query: 350 PNGGGRAAIVLS 361
               G  A+VL 
Sbjct: 151 -EDNGVMALVLP 161


>gi|254434197|ref|ZP_05047705.1| hypothetical protein NOC27_1128 [Nitrosococcus oceani AFC27]
 gi|207090530|gb|EDZ67801.1| hypothetical protein NOC27_1128 [Nitrosococcus oceani AFC27]
          Length = 38

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 12/20 (60%)

Query: 12 ANFIWKNAEDLWGDFKHTDF 31
           N +W  A+ L G+ + +D+
Sbjct: 19 ENQLWAIADKLRGNRESSDY 38


>gi|168484118|ref|ZP_02709070.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042596|gb|EDT50642.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC1873-00]
 gi|332199192|gb|EGJ13271.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA47368]
          Length = 317

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 336 MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395
             + + +   L+   + G   AI L+ S L           ++ WL E   + A+++LP 
Sbjct: 208 YAYHLLMEQGLKYLKSDG--YAIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPE 262

Query: 396 DLFFRTNIATYLWILSNR 413
           +LF     +  ++IL  +
Sbjct: 263 NLFANAKQSKTIFILQKK 280


>gi|90961178|ref|YP_535094.1| negative regulator of genetic competence [Lactobacillus salivarius
           UCC118]
 gi|90820372|gb|ABD99011.1| Negative regulator of genetic competence [Lactobacillus salivarius
           UCC118]
          Length = 830

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 106/401 (26%), Gaps = 51/401 (12%)

Query: 221 TDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280
           T +   +A      +    +      ++  T       + +   + D             
Sbjct: 123 TISSRILAALNIDLRKVKNITYRTMGVDATTANRTRKKLALSEKKQDNGTPTL------D 176

Query: 281 TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSML--F 338
            L++DL    R      +P  G+  E  +       +         G P +   ++   F
Sbjct: 177 ELARDLTEMVRKDQI--DPVVGRDNEIKRVVQILSRRTKNNPVL-LGEPGVGKTAVAEGF 233

Query: 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLEN-----------DL 386
              + N          R  ++L    L  G    GE E R + ++E            D 
Sbjct: 234 SQKIVNGEVPDNLKNKR-VMMLDMGSLVAGTKYRGEFEDRLKKIIEEIREDGNVILFIDE 292

Query: 387 IEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446
           +  ++               +   +  K    RG+VQ+I AT L    +           
Sbjct: 293 MHTLIG-------AGGAEGAIDASNILKPALARGEVQVIGATTLNEYQKYVE-------- 337

Query: 447 DQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPL---RMSFILDKTGLARLEADIT 503
                  D  + R     +            +K LRP         +    L        
Sbjct: 338 ------ADAALERRFASVTINEPTPEVALTILKGLRPKYEKHHQLQITDEALESAVKLSK 391

Query: 504 WRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINA 563
               S       +D++     ++      +     +IK   ++  + K        F  A
Sbjct: 392 RYIASRFLPDKAIDLMDEAAARVRINNAQKVDKVSAIKKKLSELSQEKTEALLKEDFEKA 451

Query: 564 FGRKDPRADPVTDVNGEWIPDTNLTEYEN--VPYL-ESIQD 601
              ++        +  +   D +  +  N  V    E I +
Sbjct: 452 AEIRNEELKIQEKLEKQIQRDKDEEDSNNYRVKVTAEDIAE 492


>gi|145639101|ref|ZP_01794709.1| HemK [Haemophilus influenzae PittII]
 gi|145272073|gb|EDK11982.1| HemK [Haemophilus influenzae PittII]
 gi|309751052|gb|ADO81036.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
           [Haemophilus influenzae R2866]
          Length = 292

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 34/214 (15%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           PR    +     L       +++P     + D   GTG       + +       K    
Sbjct: 94  PRPDTEVLVEKALQISLEKLEQNP-PHFRILDLGTGTGAIALALASELFSIC--QKRQIS 150

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L   G +L P+  A+  +       E +         +    ++       +F   +SNP
Sbjct: 151 LEIIGVDLMPDVVALAQSN-----AERNQLNVQFLQSRWFDNIT------GKFDLIVSNP 199

Query: 300 PFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI-SDGSMLFLMHLANKLELPPNGGGRAAI 358
           P+          V+ EH +    RF P    + +D     L ++        N       
Sbjct: 200 PYI--------DVQDEHLHQGDVRFEPLSALVANDAGYADLRYIIESAPNYLN------- 244

Query: 359 VLSSSPLFNGRAGSGESEIRRWLLENDL--IEAI 390
             + + L       GE ++R    EN    +E +
Sbjct: 245 -FNGTLLLEHGWQQGE-KVRSIFQENHWEMVETV 276


>gi|210612840|ref|ZP_03289493.1| hypothetical protein CLONEX_01695 [Clostridium nexile DSM 1787]
 gi|210151393|gb|EEA82401.1| hypothetical protein CLONEX_01695 [Clostridium nexile DSM 1787]
          Length = 997

 Score = 38.0 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 124/392 (31%), Gaps = 85/392 (21%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               F TP++V     A +           P     +YD T G G F     N++     
Sbjct: 75  EQGQFFTPQEVCKFLVACV----------KPEPEDIIYDLTYGKGDFF----NYL----- 115

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
               P     +G E++ +   +                    N+Q G    +        
Sbjct: 116 ----PTENNIYGTEIDMKAVKIAQ------------YLYPKANLQYGD--IRQYSPVLSG 157

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
                NPPF  +W   +  V  +                        M+   K       
Sbjct: 158 DIVFGNPPFHLEWGTKEAPVSSQ------------------------MYYCKKAYQVLKN 193

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLF--FR-TNIATY 406
           GG   +++  S L +  +  G+ E      E + +  ++   +LP D+F  +  T+  T 
Sbjct: 194 GGLLVLLVPESFLSDDFSNKGDIE------EINQMFNLIVQFSLPADVFKEYGVTSFRTK 247

Query: 407 LWILSNR-----KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN 461
             IL  +     +      KV L +  +++ +          +  ++R+   +IY   +N
Sbjct: 248 AMILQKKSQYVTERPYTTKKVVLKHPQEIYQTYVL------PVLQERRKNAANIYFECQN 301

Query: 462 GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKP 521
                    + F  + +K+L  ++ +  +        +    + K +   +  W +  K 
Sbjct: 302 TDL-EGKQKQAFQEKTVKLLFDIKRNRKITHKTGQAEKILQEYLKQTKPEELSWQEWEKI 360

Query: 522 MMQQIYPYGWAESFVKESIKSNEAKTLKVKAS 553
            +Q        +  +  + K+   +T  VK +
Sbjct: 361 KIQPEDVLRKLKEILSSANKTYRNETRIVKTN 392


>gi|308067894|ref|YP_003869499.1| DNA modification methylase [Paenibacillus polymyxa E681]
 gi|305857173|gb|ADM68961.1| Predicted DNA modification methylase [Paenibacillus polymyxa E681]
          Length = 328

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 25/120 (20%)

Query: 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVP 242
           V      L      A   +       L DP CG G  + +A++   D             
Sbjct: 172 VARALVNLAATDLTA--AKGKSGSLKLLDPCCGMGNVMIEALSMGKD------------I 217

Query: 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302
            G ++ P         +     E D  +    N+ +G            +   + + P+ 
Sbjct: 218 RGCDINPLAVRGARVNLRHFGYEEDLVKLGDMNMLEG-----------TYDAAILDMPYN 266


>gi|269976468|ref|ZP_06183453.1| modification methylase PstI [Mobiluncus mulieris 28-1]
 gi|269935269|gb|EEZ91818.1| modification methylase PstI [Mobiluncus mulieris 28-1]
          Length = 498

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 14/162 (8%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIAKMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                    K+F   + NPP+GK   KD   +    +  +  
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRIAMRSRGEDAP 169


>gi|281420308|ref|ZP_06251307.1| methylase [Prevotella copri DSM 18205]
 gi|281405610|gb|EFB36290.1| methylase [Prevotella copri DSM 18205]
          Length = 926

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 36/132 (27%)

Query: 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL------------------VPHGQEL 247
               +DP CG+G FL      +                                  G EL
Sbjct: 380 KMKFFDPACGSGNFLIITYKQLRLLEMDILHLRKKCTPEQMLDFIDGSCIRLEQFFGIEL 439

Query: 248 EPETHAVCVAGMLI--RRLESDPRRDLSKN-----------IQQGSTLSKDL-----FTG 289
               H V +  + +   ++ +    D   N           I+ G+    D       T 
Sbjct: 440 LDFPHEVAMLSLWLAEHQMNNKFHADFGVNVAALPLHNINQIKCGNACRMDWEVVCPHTK 499

Query: 290 KRFHYCLSNPPF 301
               +   NPP+
Sbjct: 500 DEEVFVFGNPPY 511


>gi|46200179|ref|YP_005846.1| hypothetical protein TTC1877 [Thermus thermophilus HB27]
 gi|46197807|gb|AAS82219.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 1121

 Score = 38.0 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 13/128 (10%)

Query: 172 EGAEDFMTPRDVVHLATALLLDP--DDALFKESPG--MIRTLYDPTCGTGGFLTDAMNHV 227
               +F TP  +       L +P          P     + L DP CG+G FL  A+  +
Sbjct: 391 HDLGEFYTPDWLAERLLNQLGEPWFIMPPGNHPPRGLPDKRLLDPACGSGTFLVLAIRAL 450

Query: 228 ADCGSHHKIPPILVP-------HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQ 278
                                  G +L P          L+   +  P R     I    
Sbjct: 451 KVNCFLAGFSEADTLEVILNSVVGIDLNPLAVTAARVNYLLAIADLLPYRRREVEIPVYL 510

Query: 279 GSTLSKDL 286
             ++    
Sbjct: 511 ADSILTPA 518


>gi|332237165|ref|XP_003267774.1| PREDICTED: LOW QUALITY PROTEIN: kinectin-like [Nomascus leucogenys]
          Length = 1356

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 58/151 (38%), Gaps = 2/151 (1%)

Query: 421 KVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKV 480
           KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S           + ++
Sbjct: 486 KVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQL 545

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPYGWAESFVKES 539
            + L      ++  + + E  +  +    L Q+  L   ++    QI     A    +E 
Sbjct: 546 EQRLMQLMESEQKRVNK-EESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 604

Query: 540 IKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
            K    K  ++K ++  +    +    K+  
Sbjct: 605 HKVIAEKDKQIKQTEDSLANERDHLTSKEEE 635


>gi|227874931|ref|ZP_03993083.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
 gi|227844508|gb|EEJ54665.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Mobiluncus mulieris ATCC 35243]
          Length = 498

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 14/162 (8%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIAKMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                    K+F   + NPP+GK   KD   +    +  +  
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRIAMRSRGEDAP 169


>gi|170092329|ref|XP_001877386.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647245|gb|EDR11489.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 409

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 67/268 (25%), Gaps = 43/268 (16%)

Query: 112 KAIFEDFDFSSTIAR--LEKAGLLYKICKNFSGIELHPDTVPDRV-------MSNIYEH- 161
           + + E F +   + +  L+   ++    + +           +            + E  
Sbjct: 120 REVIESFSYMGFLGKIDLKNPDIILTCFEEYDDCRGTTREKHEGDGHFREVFFGRLLEEG 179

Query: 162 ----LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTG 217
               LI +F  +      +     ++  L     L              + LYDP  GTG
Sbjct: 180 SARLLIAKFDVKKRNYYGNTSMESEISLLMANQTLA----------APGKLLYDPFMGTG 229

Query: 218 GFLTDAMNHVADCGSH--HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN 275
                  +  A                 G       + V    + +   +          
Sbjct: 230 SMAYPTAHFGAMVFGSDIDGRQMRGKVPGVIRAATQYGVASRILGLSTFDVT-------- 281

Query: 276 IQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH-KNGELGRFGPGLPKISDG 334
                        G+ F   +++PP+G +    +   +KE           P +P     
Sbjct: 282 -------RNPWRCGELFDAIVTDPPYGVRAGAKRLGRKKELTPTQRDLDDQPYIPPTRPY 334

Query: 335 SMLFLMHLANKL-ELPPNGGGRAAIVLS 361
            +  L      L       GGR    L 
Sbjct: 335 ELSHLAADLVILARYLLKPGGRLVFFLP 362


>gi|323476892|gb|ADX82130.1| hypothetical protein SiH_0775 [Sulfolobus islandicus HVE10/4]
          Length = 319

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 68/203 (33%), Gaps = 29/203 (14%)

Query: 198 LFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257
               +P     + D  CG G F+   +   ++ G        +    +            
Sbjct: 4   KLFSNPSPNARVLDAGCGEGVFIEAIIKWYSERGIELPEIVGVEIDHK------------ 51

Query: 258 GMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
             L  R            I +   L+ K+   G  F Y +SNPP+    +     +  E 
Sbjct: 52  --LAERARKKFNNISKVKIIEDDFLTVKEEKLGGEFDYIISNPPYISYEK-----ISPEK 104

Query: 317 KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESE 376
           +      F   + +  D  MLF     N L+     GGR   +     L+   AG     
Sbjct: 105 RKLYKSIFEAAVGRF-DIYMLFFERALNLLKP----GGRMVFLTPEKYLYVISAGKLRKL 159

Query: 377 I-RRWLLENDLI---EAIVALPT 395
           + R  ++E +LI   E I+A PT
Sbjct: 160 LSRYRVVEIELINAFEGILAYPT 182


>gi|306818256|ref|ZP_07451986.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35239]
 gi|304648995|gb|EFM46290.1| site-specific DNA-methyltransferase (adenine-specific) [Mobiluncus
           mulieris ATCC 35239]
          Length = 498

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 14/162 (8%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
            +  ++       + TP     L   +                  + DP  G+G      
Sbjct: 19  SKLSTQNQAKLGQYFTPVTTAQLIAKMAELHQSGTI--------RVLDPGAGSGILTAAL 70

Query: 224 MNHVADCGSHHKIPPILVPHGQEL--EPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
           +N +    +  K+  + +    +L    ET                    ++ +    ST
Sbjct: 71  VNRILKETTSLKVEVLAIETDTQLIRHLETTLNACIN---AGHGRVKASWVNADFILDST 127

Query: 282 LSKDLFT-GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322
                    K+F   + NPP+GK   KD   +    +  +  
Sbjct: 128 GLNHSLNLEKKFDLVIENPPYGKLGVKDTKRIAMRSRGEDAP 169


>gi|294807402|ref|ZP_06766207.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294445393|gb|EFG14055.1| N-6 DNA Methylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 1926

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 49/241 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D D       + +  R           +  FL     K       GG 
Sbjct: 194 VSNIPFGDVAVFDPDFSG----SKDPARLSAARTI---HNYFFL-----KSLDAVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++ +  +  +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPTNAPIREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQK 297

Query: 413 R 413
            
Sbjct: 298 N 298


>gi|302509424|ref|XP_003016672.1| hypothetical protein ARB_04964 [Arthroderma benhamiae CBS 112371]
 gi|291180242|gb|EFE36027.1| hypothetical protein ARB_04964 [Arthroderma benhamiae CBS 112371]
          Length = 230

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 44/169 (26%), Gaps = 21/169 (12%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
           +P     L D   G GG                K       +  E + ET         +
Sbjct: 68  APETKCILIDAFAGAGGNTIAF----------AKSNRWKRVYAIEKDRETLKCAKHNAEL 117

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
             +       +    +    L   L     +     +PP+G       +    E  + E 
Sbjct: 118 YGVADKITWFVGDCFEL---LQNQLKDLAPYSVIFGSPPWGVFNLSTMEPYSLEFLHAEF 174

Query: 322 GRFG----PGLPKISD-GSMLFLMHLANK---LELPPNGGGRAAIVLSS 362
            +F       LP+ SD   +        K   +     G  +A  + + 
Sbjct: 175 SKFTRDVVLFLPRTSDLRQLAATTAPGKKSLVMHYCSEGASKALCIYNG 223


>gi|18976772|ref|NP_578129.1| hypothetical protein PF0400 [Pyrococcus furiosus DSM 3638]
 gi|18892363|gb|AAL80524.1| hypothetical protein PF0400 [Pyrococcus furiosus DSM 3638]
          Length = 329

 Score = 38.0 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 30/126 (23%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R L DP  GTGG L +A                
Sbjct: 167 PPRIARAMVNL------------TRATRELLDPFMGTGGMLIEAG------------LMG 202

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    ++    +          T  K+ F GK F    ++P
Sbjct: 203 LKVYGLDIREDMVEGAKINLEYYGIKDYVVKVGDA------TRIKEAFPGKTFEAIATDP 256

Query: 300 PFGKKW 305
           P+G   
Sbjct: 257 PYGSST 262


>gi|301309531|ref|ZP_07215473.1| putative DNA methylase [Bacteroides sp. 20_3]
 gi|300832620|gb|EFK63248.1| putative DNA methylase [Bacteroides sp. 20_3]
          Length = 1926

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 49/241 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D D       + +  R           +  FL     K       GG 
Sbjct: 194 VSNIPFGDVAVFDPDFSG----SKDPARLSAARTI---HNYFFL-----KSLDAVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++ +  +  +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPTNAPIREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQK 297

Query: 413 R 413
            
Sbjct: 298 N 298


>gi|114567999|ref|YP_755153.1| type IIS restriction enzyme [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338934|gb|ABI69782.1| type IIS restriction enzyme [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 1183

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 65/238 (27%), Gaps = 47/238 (19%)

Query: 35  ILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGST 94
           ILPF   +  +C+       + ++                          E     +   
Sbjct: 170 ILPFLFEKIEDCSEILFPDNLLQENSFLRNMTNPE------------IIPEEDWQEV--E 215

Query: 95  NTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRV 154
                 + YI   S+    +F +   +  I++      +    + F+         P  +
Sbjct: 216 IIGWLYQYYI---SEKKDEVFANLKKNIKISK----ENIPAATQLFT---------PHWI 259

Query: 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD--ALFKESPGMIRTLYDP 212
           +  + E+ + R          +    R ++      +    D              + DP
Sbjct: 260 VGYLAENSLGRL------WMLNHPQSR-LIEKMEYYIKPEQDEEDYLIIKSPEEIKVCDP 312

Query: 213 TCGTGGFLTDAMNHVADCGSHH--------KIPPILVPHGQELEPETHAVCVAGMLIR 262
            CG+G  L  A + +               +       +G E++     +    ++++
Sbjct: 313 ACGSGHMLVYAFDLLYAIYEEAGYMPTEIPEKILTHNLYGIEIDKRAGELAAFALVMK 370


>gi|207743917|ref|YP_002260309.1| hypothetical truncated protein (n-terminal fragment) [Ralstonia
           solanacearum IPO1609]
 gi|206595319|emb|CAQ62246.1| hypothetical truncated protein (n-terminal fragment) [Ralstonia
           solanacearum IPO1609]
          Length = 550

 Score = 38.0 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 42/176 (23%), Gaps = 46/176 (26%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT-------------LYDPTCGTGG 218
                  T    +      L   +     E     +T             ++DP CG+G 
Sbjct: 295 GNMGMHYTSVQNIMKVVEPLFLNELKEEFEKHSASKTKLEQLLLRLEHLKIFDPACGSGN 354

Query: 219 FLTDAMNHVADCGSHHKIPPIL---------------VPHGQELEPETHAVCVAGMLI-- 261
           FL  A   +                              +G EL+   H + +  + +  
Sbjct: 355 FLIIAYKELRQLEMEIFKRIQELTPEGIFPLSRIKLSQFYGIELDDFAHEIAILSLWLAE 414

Query: 262 -----------RRLESDPRRDLSKNIQQGSTLSKDLFT-----GKRFHYCLSNPPF 301
                                 S N+   + +  D         +   Y L NPP+
Sbjct: 415 HQMNQKFKETFGHTNPALPLKSSGNVVSDNAIHVDWDEFLAPKAEHETYLLGNPPY 470


>gi|332664599|ref|YP_004447387.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333413|gb|AEE50514.1| N-6 DNA methylase [Haliscomenobacter hydrossis DSM 1100]
          Length = 532

 Score = 38.0 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 62/214 (28%), Gaps = 32/214 (14%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            + +  F TP+ +       +    + L         ++ +P+ G G FL      +   
Sbjct: 4   KKLSGSFYTPKILADFMVDYISLKFEDL------ASISVLEPSVGDGVFL----KAIYKN 53

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
                    ++   ++                            N Q G+         +
Sbjct: 54  EVFSNKIHKIIAVEKDNNELDKISSEMN----NENLSVINADFLNFQHGNK--------E 101

Query: 291 RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPP 350
           +F   + NPP+ +K   D   +E   +           PK  +    FL+          
Sbjct: 102 KFSLVIGNPPYIRKKLLDDSQIESCKEIHHNANLSVNQPK--NIWTAFLVRCI----EFT 155

Query: 351 NGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           +  G  A VL S  L    A     E+R  +L+ 
Sbjct: 156 SDNGILAFVLPSELLQVKYAD----ELRTLILKE 185


>gi|294645516|ref|ZP_06723215.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
 gi|292639142|gb|EFF57461.1| N-6 DNA Methylase [Bacteroides ovatus SD CC 2a]
          Length = 1453

 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 49/241 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D D       + +  R           +  FL     K       GG 
Sbjct: 194 VSNIPFGDVAVFDPDFSG----SKDPARLSAARTI---HNYFFL-----KSLDAVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++ +  +  +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPTNAPIREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQK 297

Query: 413 R 413
            
Sbjct: 298 N 298


>gi|270593975|ref|ZP_06221489.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
 gi|270318371|gb|EFA29516.1| HaeIV restriction/modification system [Haemophilus influenzae
           HK1212]
          Length = 164

 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 17/130 (13%)

Query: 91  LGSTNTRNNLESYIASFSDNAKAIFE-----DFDFSSTIARLE---------KAGLLYKI 136
           +      N    +     +  + + E      F  ++  A L+          A +L +I
Sbjct: 38  ISEEEINNAFHLFKNKKDETKRTVLEYFTQLKFYSNNPFAFLDVHNEKLFFQNAVILKEI 97

Query: 137 CKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD 196
            +    I+L  +    + + +++E  + +    V +    F TP  +V    + L     
Sbjct: 98  VQMLQDIKLKSEEEQHQFLGDLFEGFLDQ---GVKQSEGQFFTPMPIVKFLISSLPLEQV 154

Query: 197 ALFKESPGMI 206
              K +P +I
Sbjct: 155 LQNKNAPKVI 164


>gi|255973573|ref|ZP_05424159.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285046|ref|ZP_07565196.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
 gi|255966445|gb|EET97067.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502947|gb|EFM72207.1| N-6 DNA Methylase [Enterococcus faecalis TX0860]
          Length = 1737

 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 68/243 (27%), Gaps = 51/243 (20%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 203 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAMPPEMREQSE---------LYGVEIDS 253

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 254 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 300

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                          +     + GG  A++ SS  +    
Sbjct: 301 KTLKKYYIHDY---------------------FIKRSIDLVHEGGIVAVITSSGTMDKKD 339

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
           A       R+ L     +   V LP   F     T + T +         + + + QL+ 
Sbjct: 340 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKHSGIQEQAEEQLLE 394

Query: 427 ATD 429
              
Sbjct: 395 RRQ 397


>gi|221067000|ref|ZP_03543105.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gi|220712023|gb|EED67391.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 375

 Score = 38.0 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 54/212 (25%), Gaps = 48/212 (22%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               + T  + +   + LL  P+             ++DP CG G  L D    +     
Sbjct: 14  KNGYYPTDEESIRRISNLLQMPEKGGI--------RMFDPCCGEGSALADLRQLL---TV 62

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G EL+ +        +L R + SD    +                 +  
Sbjct: 63  DRGRIGGAEAFGIELDRDRARHAKG-ILDRVIHSDVHDVV--------------LKPRSM 107

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
                NPP+G              +  +  R                     K       
Sbjct: 108 GLLFLNPPYGFGVADQSAQRSLLAEADKAERLER--------------TFLRKTLPYLAY 153

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           GG    ++    L        + EIR +L+ N
Sbjct: 154 GGVLVYIIPHYAL--------DDEIRSYLVRN 177


>gi|3805982|gb|AAC69253.1| restriction enzyme BcgI alpha chain homolog [Helicobacter pylori]
          Length = 268

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 33/171 (19%)

Query: 54  AVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDNAKA 113
            + E       S    +  +     SF   S+        T+    +   +   S   K 
Sbjct: 103 QISEFLKTKNLSEEKRDLMLA----SFKEISK-DPQRDKETSLDKAISMLLEKDSSITKQ 157

Query: 114 IFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEG 173
           IF                 LY+       I    +T    +M  +Y   + ++     + 
Sbjct: 158 IF---------------TFLYEFVHK--PINESDNTGHLDIMGELYSEFL-KYALGDGKE 199

Query: 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAM 224
               +TP  V  + + LL     +           + D   G+ GFL  +M
Sbjct: 200 LGIVLTPPYVTKMMSELLGVNAKSF----------VMDLAAGSAGFLISSM 240


>gi|262164055|ref|ZP_06031794.1| hypothetical protein VMA_000496 [Vibrio mimicus VM223]
 gi|262027583|gb|EEY46249.1| hypothetical protein VMA_000496 [Vibrio mimicus VM223]
          Length = 1054

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 25/186 (13%)

Query: 88  LSTLGSTNTRNNLESY--IASFSDNAKAIFE-DFDFSSTIARLEKAGLLYKICKNFS--G 142
           L T+ +   R+       I  F + A  IF    D +++   LE    L +     S   
Sbjct: 271 LQTISNDIERSQFFESVGIKGFVEEA--IFSWYLDATNSENSLEIVEALREALIQVSLYR 328

Query: 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKES 202
            +         V+   Y+ L+      + +   +F TP          L+    +   + 
Sbjct: 329 FDDLTSARSRDVLKGFYQALV---PEVLRKSLGEFYTP--------DWLVTETLSRAVDG 377

Query: 203 PGMIRTLYDPTCGTGGFLTDA----MNHVADCGSHHKIPPI---LVPHGQELEPETHAVC 255
             + + + DPTCG+G FL              G   +           G +L P      
Sbjct: 378 EWLHKRVLDPTCGSGSFLLQTIGLKRKEAEILGLDAEETVKLILDTVWGFDLNPLAVQAA 437

Query: 256 VAGMLI 261
               LI
Sbjct: 438 RVNFLI 443


>gi|148985982|ref|ZP_01819035.1| hypothetical protein CGSSp3BS71_05054 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147921955|gb|EDK73080.1| hypothetical protein CGSSp3BS71_05054 [Streptococcus pneumoniae
           SP3-BS71]
 gi|301800800|emb|CBW33452.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
          Length = 317

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 264 LFANAKQSKTIFILQKK 280


>gi|332877324|ref|ZP_08445072.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684707|gb|EGJ57556.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1926

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 49/241 (20%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            F TP ++      +L +               + +P+ G G F+    + V +      
Sbjct: 104 AFYTPPEITGTIADVLHEHGI--------RPDRVLEPSAGVGAFV----DAVLENRPDAD 151

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
           I                      ++  ++           +Q    + K       F   
Sbjct: 152 IMAFEK----------------DLMTGKILKHLHPGQKVRVQGFEKIEKPFMN--HFDLA 193

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +SN PFG     D D       + +  R           +  FL     K       GG 
Sbjct: 194 VSNIPFGDVAVFDPDFSG----SKDPARLSAARTI---HNYFFL-----KSLDAVREGGI 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIATYLWILSN 412
            A + S   L         + IR +++ +  +  +  LP +LF     T + + L IL  
Sbjct: 242 VAFITSQGVL----DAPTNAPIREYMMNHANLVGVARLPNNLFTDNAGTEVGSDLIILQK 297

Query: 413 R 413
            
Sbjct: 298 N 298


>gi|210620633|ref|ZP_03292157.1| hypothetical protein CLOHIR_00100 [Clostridium hiranonis DSM 13275]
 gi|210155242|gb|EEA86248.1| hypothetical protein CLOHIR_00100 [Clostridium hiranonis DSM 13275]
          Length = 488

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 20/162 (12%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA-MNHVADCGSH--- 233
            TP+D+            D          +T  + +CG G  L  A   ++ DC  +   
Sbjct: 9   FTPKDIAENM-------LDEAGYIKNLYGKTFLENSCGQGNILCLAVYRYILDCKKNNVS 61

Query: 234 ---HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK 290
               K+       G E++   +  C+  +       +       NI +G+ L  DL   K
Sbjct: 62  LDKIKMGLENDFIGVEIDELNYKKCIENLESLAQSFEIYNVKW-NIIKGNFL--DLKINK 118

Query: 291 RFHYCLSNPP---FGKKWEKDKDAVEKEHKNGELGRFGPGLP 329
           +F Y + NPP   +    ++++  + +   + + G+F    P
Sbjct: 119 KFDYIVGNPPYISYADISKENRIFIRENFNSCKKGKFDYCYP 160


>gi|15901866|ref|NP_346470.1| hypothetical protein SP_2045 [Streptococcus pneumoniae TIGR4]
 gi|15903897|ref|NP_359447.1| hypothetical protein spr1855 [Streptococcus pneumoniae R6]
 gi|111658728|ref|ZP_01409365.1| hypothetical protein SpneT_02000141 [Streptococcus pneumoniae
           TIGR4]
 gi|116516707|ref|YP_817261.1| hypothetical protein SPD_1854 [Streptococcus pneumoniae D39]
 gi|14973556|gb|AAK76110.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
 gi|15459545|gb|AAL00658.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077283|gb|ABJ55003.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
 gi|332199119|gb|EGJ13199.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA41317]
          Length = 317

 Score = 38.0 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 264 LFANAKQSKTIFILQKK 280


>gi|10803643|ref|NP_046041.1| hypothetical protein VNG7096 [Halobacterium sp. NRC-1]
 gi|2822374|gb|AAC82880.1| unknown [Halobacterium sp. NRC-1]
          Length = 706

 Score = 38.0 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 43/154 (27%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPG-------------------MIRTLYDP 212
           +    + TP  VV       L+P     +                           + DP
Sbjct: 480 KATGSYYTPEYVVEYIVENTLEPLVDDIRADLAGRSARGEDRGFAEEFAERIFDLKILDP 539

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPP-----------------------ILVPHGQELEP 249
             G+G FLT A++++A      +                              +G +L P
Sbjct: 540 AMGSGHFLTSAIDYLAREIIDAQERQAAQQGIETVNQDHDINWARRQVAQRCIYGVDLNP 599

Query: 250 ETHAVCVAGMLIRRLESD-PRRDLSKNIQQGSTL 282
               +    + +R L ++ P   L  +++ G++L
Sbjct: 600 LAVELAKVSLWLRTLAAEQPLAFLDHHLKTGNSL 633


>gi|258539243|ref|YP_003173742.1| adenine-specific DNA methylase [Lactobacillus rhamnosus Lc 705]
 gi|257150919|emb|CAR89891.1| Adenine-specific DNA methylase [Lactobacillus rhamnosus Lc 705]
          Length = 337

 Score = 38.0 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 96/337 (28%), Gaps = 51/337 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ST+     E+     S               +   E    L  +          P+
Sbjct: 22  QQLKSTDIAAITEAGEDLSSGEVMQ-------EDGLPNDEAKKKLEALFGQVKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT +       +F +       
Sbjct: 75  -----EIRQALQLVLVKAIKVDGIEPNKQITPDAMASLATFMAT-----VFDQQQPNQLK 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   G+G  L   MN +            +  +G + +    AV      ++ L+ + 
Sbjct: 125 VADLAVGSGNLLFAVMNQLHKA-----RNVTVKGYGVDNDEALLAVAGMSSSLQHLDVEL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                        L  D    K     +S+ P G         V++  K           
Sbjct: 180 F--------HQDAL--DGLLFKDIDVVVSDLPVG------YYPVDERAKK-------FAT 216

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                 S    + +   +++   GG    +    S +F     +G +    WL E    +
Sbjct: 217 AAKEGHSYAHHLLIEQSMKVLKPGG--LGMFYVPSRVFQSEEAAGLTA---WLAEKTYFQ 271

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQL 424
            ++ LP D F        L IL     + +R K V L
Sbjct: 272 GLLNLPDDFFADKQAEKSLLILQKPSQDVKRAKQVLL 308


>gi|260495484|ref|ZP_05815610.1| type II restriction-modification enzyme [Fusobacterium sp. 3_1_33]
 gi|260197021|gb|EEW94542.1| type II restriction-modification enzyme [Fusobacterium sp. 3_1_33]
          Length = 1244

 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 42/143 (29%), Gaps = 10/143 (6%)

Query: 117 DFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV------PDRVMSNIYEHLIRRFGSEV 170
            F+   ++   +K   +  I   ++      D           ++  ++E+L+       
Sbjct: 400 KFNLDDSLFSNDKDNGILDIFDRYNFTINENDNYETEVAVDPEMLGKVFENLLE---VSD 456

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
            +    F TPR++V   T   +        E  G+ +   +     G F  +    + + 
Sbjct: 457 RKSKGAFYTPREIVRYMTNESIMNYLLTHLEEKGISKEDLEYLFNLGEFTKEYDEQIFEK 516

Query: 231 GS-HHKIPPILVPHGQELEPETH 252
                +        G       +
Sbjct: 517 DYLKDEEELKKGIFGMPRNIIIY 539


>gi|261403342|ref|YP_003247566.1| hypothetical protein Metvu_1227 [Methanocaldococcus vulcanius M7]
 gi|261370335|gb|ACX73084.1| conserved hypothetical protein [Methanocaldococcus vulcanius M7]
          Length = 1197

 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 85/287 (29%), Gaps = 74/287 (25%)

Query: 116 EDFDFSSTIARLEK----AGLLYKICKNFSGIELHPDTVP------DRVMSNIYEHLIRR 165
           E F        L+K       +  I   F   +   +         D ++ +I+E   ++
Sbjct: 264 EVFYIDGKTEELKKIEPKNVSIVPILNLFESRDWVVEGGDVEGDITDMMLGDIFE---KQ 320

Query: 166 FGSEVSEGAEDFMTPRDVVHLATA-----LLLDPDDALFKESPGMIRTLY---------- 210
              E  + +  + TP  +    +       +LD  +   K +   +   +          
Sbjct: 321 MVEEERKDSGSYYTPAKITRYISQNAIESYVLDRLNEELKTNYKNLDDFFKNEKDLRAYK 380

Query: 211 ------------DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258
                       DP CG+G FL  A+  + D     +     +                 
Sbjct: 381 LLYDILNDIRILDPACGSGHFLERAVEVLVDIYERLRDKVKELGFD------------GN 428

Query: 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK---RFHYCLSNPPFGKKWEKDKDAVEK- 314
           + I         D + NI+  + LS D    K   +FH  +S   +G    +    + K 
Sbjct: 429 LFI-----IKVADDNGNIRNENLLSIDDEEFKMRIKFHVIVSKNIYGVDINESAVGISKA 483

Query: 315 ----------EHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPN 351
                     + + G   RF      I DG+ L       +++ P  
Sbjct: 484 RLFLSIAKHFDKEKGIFVRFPNVHFNIRDGNSL---IGYARMKKPER 527


>gi|313892835|ref|ZP_07826415.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442618|gb|EFR61030.1| type I restriction-modification system, M subunit family protein
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 68

 Score = 38.0 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 130 AGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           A +L KI      +    D     +  ++YE+++ +  +        F TP+ +  +   
Sbjct: 11  AQVLEKIITGLDDL-YTHDIANLDMQGDLYEYMLSKLSTAG--TNGQFRTPKHIREMMVK 67


>gi|315924272|ref|ZP_07920496.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622433|gb|EFV02390.1| protein-(glutamine-N5) methyltransferase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 283

 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 25/138 (18%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R F     +     + PR          L       +        + D  CG+G      
Sbjct: 83  REFMGLDFDVNAHVLIPRPDTENIVETALAWISKRSRPE------VLDLCCGSGAIGIAL 136

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
            N            P +     ++  E  A+  +      +E          +  G  L 
Sbjct: 137 KN----------CCPNIQLWLSDISKEALAIAKSNAQKHHIE--------AQLILGD-LF 177

Query: 284 KDLFTGKRFHYCLSNPPF 301
           + L  G+RF   ++NPP+
Sbjct: 178 EGLLPGQRFDMIVTNPPY 195


>gi|315453952|ref|YP_004074222.1| Type I restriction restriction /modification enzyme [Helicobacter
           felis ATCC 49179]
 gi|315133004|emb|CBY83632.1| Type I restriction restriction /modification enzyme [Helicobacter
           felis ATCC 49179]
          Length = 1260

 Score = 38.0 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 153 RVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP 212
                +Y     +  S   + +  F T   +        L            +   + D 
Sbjct: 437 YTKGQLYL----KNTSNSRKSSGSFYTNEQITKTLVEHALAH----LDNDNVLSFRILDN 488

Query: 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247
            CG+G FL +A++ V+     H  P +  P  QE 
Sbjct: 489 ACGSGAFLIEALHQVSQKALAHNYPALQAPFEQEK 523


>gi|332842312|ref|XP_003314392.1| PREDICTED: kinectin [Pan troglodytes]
          Length = 1357

 Score = 38.0 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 2/161 (1%)

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            N +    + KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S     
Sbjct: 477 KNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKL 536

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPY 529
                 + ++ + L      ++  + + E  +  +    L Q+  L   ++    QI   
Sbjct: 537 TDTLVSKQQLEQRLMQLMESEQKRVNK-EESLQMQVQDILEQNEALKAQIQQFHSQIAAQ 595

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             A    +E  K    K  ++K ++  + +  +    K+  
Sbjct: 596 TSASVLAEELHKVIAEKDKQIKQTEDSLASERDHLTSKEEE 636


>gi|217034757|ref|ZP_03440156.1| hypothetical protein HP9810_904g10 [Helicobacter pylori 98-10]
 gi|216942724|gb|EEC22283.1| hypothetical protein HP9810_904g10 [Helicobacter pylori 98-10]
          Length = 504

 Score = 38.0 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 37/207 (17%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMI 206
            ++     + + YE       +        + TP  +V     L   P D    ++    
Sbjct: 65  ENSSDLEKLGSYYEE---ELSNTTRNLEGIYYTPNRIVE---QLFTLPKDFDTSQA---- 114

Query: 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLES 266
               DP  G+G F+  A+              +   +G + +    A+       +R++ 
Sbjct: 115 -IFCDPAVGSGNFIMHALKL---------GFKVENIYGYDTDAFAIALTK-----KRIKE 159

Query: 267 DPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP 326
               D   NI Q         T  +F    +NPP+GKK+ +++    +  K         
Sbjct: 160 RYHLDC-PNIMQKD-FLNLKHTP-QFDCIFTNPPWGKKYNQNQK---ENFKQQFN----- 208

Query: 327 GLPKISDGSMLFLMHLANKLELPPNGG 353
            L +  D + LF +   N L+   + G
Sbjct: 209 -LSQSLDSASLFFIASLNCLKENAHLG 234


>gi|301794979|emb|CBW37443.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
          Length = 317

 Score = 38.0 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 264 LFANAKQSKTIFILQKK 280


>gi|148992117|ref|ZP_01821891.1| hypothetical protein CGSSp9BS68_11540 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489938|ref|ZP_02714137.1| adenine-specific DNA methylase [Streptococcus pneumoniae SP195]
 gi|168492466|ref|ZP_02716609.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC0288-04]
 gi|169834422|ref|YP_001695396.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|147929166|gb|EDK80177.1| hypothetical protein CGSSp9BS68_11540 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168996924|gb|ACA37536.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183571653|gb|EDT92181.1| adenine-specific DNA methylase [Streptococcus pneumoniae SP195]
 gi|183573377|gb|EDT93905.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           CDC0288-04]
 gi|332071839|gb|EGI82329.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA17570]
          Length = 317

 Score = 37.6 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 264 LFANAKQSKTIFILQKK 280


>gi|212224040|ref|YP_002307276.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           onnurineus NA1]
 gi|212008997|gb|ACJ16379.1| N2, N2-dimethylguanosine tRNA methyltransferase [Thermococcus
           onnurineus NA1]
          Length = 331

 Score = 37.6 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 45/170 (26%)

Query: 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262
                 + DP  G GG L +A                L  +G +++PE        +   
Sbjct: 177 TKAREEILDPFMGAGGILMEAG------------LIGLKVYGVDIKPEMVEGARLNL--- 221

Query: 263 RLESDPRRDLSKNIQQGS-TLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGEL 321
               +        ++ G  T  ++LF  K+F    ++PP+G                   
Sbjct: 222 ----EHFGVKDYELRLGDATKLEELFPDKKFEAVATDPPYGTSA-------------TLA 264

Query: 322 GRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAG 371
           GR    L + +             +      GGR AI   +S  F+G A 
Sbjct: 265 GRARDELYRKA----------LRSIYNVLEDGGRLAIAFPTS--FDGEAE 302


>gi|225861864|ref|YP_002743373.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229609|ref|ZP_06963290.1| adenine-specific DNA methylase [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298501543|ref|YP_003723483.1| site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727528|gb|ACO23379.1| adenine-specific DNA methylase [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237138|gb|ADI68269.1| possible site-specific DNA-methyltransferase (adenine-specific)
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389038|gb|EGE87385.1| adenine-specific methyltransferase [Streptococcus pneumoniae
           GA04375]
          Length = 317

 Score = 37.6 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396
           L +      L+         AI L+ S L           ++ WL E   + A+++LP +
Sbjct: 212 LLMEQGLKYLKSDGY-----AIFLAPSDLLTSPQS---DLLKEWLKEEASLVAMISLPEN 263

Query: 397 LFFRTNIATYLWILSNR 413
           LF     +  ++IL  +
Sbjct: 264 LFANAKQSKTIFILQKK 280


>gi|183221178|ref|YP_001839174.1| hypothetical protein LEPBI_I1792 [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911269|ref|YP_001962824.1| N6-adenine-specific DNA methylase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775945|gb|ABZ94246.1| N6-adenine-specific DNA methylase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779600|gb|ABZ97898.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 358

 Score = 37.6 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 31/137 (22%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGS------------------------HHKIPPI 239
               TL DP CG+G  L +A       G                           + P  
Sbjct: 172 KEGDTLLDPMCGSGTILIEAALRERLYGEINRFLFAESPIFQILFPTYVFSERKKENPTT 231

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
               G +++PE   +         +E   + ++   +   +               ++NP
Sbjct: 232 PHLFGFDIDPEAIRIAKENAYEAGVEDFIKFEVGDCLALKNAFGSKGH-------LVTNP 284

Query: 300 PFGKKWEKDKDAVEKEH 316
           P+G +  K  + + + +
Sbjct: 285 PYGDRIGKPMEDLREMY 301


>gi|296134051|ref|YP_003641298.1| ATP-dependent protease La [Thermincola sp. JR]
 gi|296032629|gb|ADG83397.1| ATP-dependent protease La [Thermincola potens JR]
          Length = 777

 Score = 37.6 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 52/150 (34%), Gaps = 4/150 (2%)

Query: 422 VQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFGYRRIKV 480
           V+ +     +     E  ++  +  +    +  +    E   K S+ +   T     + +
Sbjct: 104 VKFLEHEPYFKVEIEEYAEQHEVTPEIEALMRSLVNQFEQYVKMSKRIPPETVITV-VNL 162

Query: 481 LRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESI 540
             P R++ I+       L+ +   R L  +     L+IL  ++ +       E  +   +
Sbjct: 163 EDPGRLADIIVSH--LALKTEDKQRVLEAIEAKKRLEILCEILAKEMEILELERKINLRV 220

Query: 541 KSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
           +    KT K    +  + A     G KD +
Sbjct: 221 RKQMEKTQKEYYLREQLKAIQKELGEKDEK 250


>gi|34451624|gb|AAQ72370.1| BseRI endonuclease [Bacillus sp. R]
          Length = 1114

 Score = 37.6 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 76/259 (29%), Gaps = 37/259 (14%)

Query: 86  YSLSTLGSTNTRNN---------LESYIASFSDNAKAIF-----EDFDFSSTIARLEKAG 131
            +L+ L   N   N         + + +       + I      + F + +    LEK  
Sbjct: 260 LTLAKLVCANIIENRALRSDRDEISAIMQGDFFKVRGIMNLVEYDYFGWLNEGEFLEK-- 317

Query: 132 LLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGA-EDFMTPRDVVHLATAL 190
            +  + +     +L           +++  ++ +  S           TP+ +       
Sbjct: 318 -IIPVAQEMQE-DLMAYNFSAPPADDLFGQIMAQLASRSQRILLGQEWTPKWLASSIVKQ 375

Query: 191 LLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
           +L+      K        L D  CG+G  + +A+         +KI          L+P 
Sbjct: 376 VLE------KLPVEEFPKLVDMCCGSGALIVEAIEQSKAMIKRNKITSQSSI---GLDPT 426

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
                 +GMLI+ +E+    +  +  Q    L     TG          P      K   
Sbjct: 427 N---GSSGMLIKSIEATQCLNEIEIDQAEIELLTQAITGFDID------PLAVMLSKISW 477

Query: 311 AVEKEHKNGELGRFGPGLP 329
            +         G F   +P
Sbjct: 478 LLAARDWLEPFGSFEVTIP 496


>gi|78777236|ref|YP_393551.1| cell divisionFtsK/SpoIIIE [Sulfurimonas denitrificans DSM 1251]
 gi|78497776|gb|ABB44316.1| Cell divisionFtsK/SpoIIIE [Sulfurimonas denitrificans DSM 1251]
          Length = 739

 Score = 37.6 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/157 (10%), Positives = 47/157 (29%), Gaps = 7/157 (4%)

Query: 408 WILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSR----ENGK 463
            ++   ++      V             ++G K+      +   I  +Y +     +  +
Sbjct: 130 MVIIFDRSAHEMVDVLYAKLKKSGIKREDKGIKKSFEAKSKSNSIAKVYANFNKEQKEQE 189

Query: 464 FSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM 523
            S+           IKV   + +   +D+    R E     ++   + +   L+++  + 
Sbjct: 190 SSQDYTQD---VVEIKVEPEIEVELEIDQPAYLRKEQPKVAQESKKVKEHNILELVHEIK 246

Query: 524 QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAF 560
           +Q       E      + +   K    K     + + 
Sbjct: 247 EQKNTIVVEELEENAKLLATIEKGSVEKPKNFKLPSI 283


>gi|315425135|dbj|BAJ46806.1| type II restriction enzyme, methylase subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 1019

 Score = 37.6 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 72/302 (23%)

Query: 28  HTDFGKVILP-FTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGY---SFY 81
            + + +  L     L  L+    L+  RS + +       + +  ES  K  G     F 
Sbjct: 179 ASSYAQRFLGRLMFLYFLQRKGWLKGDRSFINKINDYLELNRLFYESLNKKNGEEGIPFL 238

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N S +      ++     L   + S   +A+  F  ++F      +++   L        
Sbjct: 239 NGSLFEREEYLTSKVEKELAMKMNSIFYDARNFFNRYNF-----TVDETTPLEVEVS--- 290

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD---PDDAL 198
                   +   ++  + E+L+     +       F TP + +       +      +  
Sbjct: 291 --------IDPLLLGTVLENLLE---EKERGEKGTFYTPVNEIGFMCRRAIAAWLGLEEG 339

Query: 199 FKESPGMIR-------------------------------TLYDPTCGTGGFLTDAMNHV 227
            ++  G +R                                + DP  G+GGFL   M  +
Sbjct: 340 VQQRNGELRFVDGLQRYVDELKKRRDEREIREFREKLLTLKILDPAVGSGGFLVVMMQTI 399

Query: 228 ADCGSHHKIPPIL-------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
                  +                    +G ++EPE   +    + +  +    + +   
Sbjct: 400 LQLIQEVEEAVGWKSDLEQYKRRIIPNLYGFDIEPEAVEIARLRIWLSLIVDQMQPEPLP 459

Query: 275 NI 276
           N+
Sbjct: 460 NL 461


>gi|296112047|ref|YP_003622429.1| hypothetical protein LKI_09605 [Leuconostoc kimchii IMSNU 11154]
 gi|295833579|gb|ADG41460.1| hypothetical protein LKI_09605 [Leuconostoc kimchii IMSNU 11154]
          Length = 220

 Score = 37.6 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 66/222 (29%), Gaps = 27/222 (12%)

Query: 104 IASFSDNAKAIF---EDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYE 160
           I + S     IF   E F     + ++        +             + +      Y+
Sbjct: 2   IKTASKTIHKIFGVKESFKLPDEMMKI--------VLDKEKRETAMMRYLDEYTRDLSYD 53

Query: 161 HLIRRFGSEVS--EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218
                +  E +  +  +   TP  +  + + ++            G   + Y+PT GTGG
Sbjct: 54  GFHEYYEEEQAERKKNKQDFTPDSISDILSKIV------------GTSNSYYEPTAGTGG 101

Query: 219 FLTDAMNHVA-DCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNI 276
            L    +            P   +   +EL        +  + IR + +     D+    
Sbjct: 102 MLIRKWHQDQMATSPFDYKPSNYLFFAEELSDRALPFLIFNLAIRGINAAVIHGDVLTRE 161

Query: 277 QQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKN 318
            +G    ++          ++  P+  + +K     + E + 
Sbjct: 162 ARGVFFIQNDNDDFLGFSSVNVMPYSDEVKKYFGIQKWEGEK 203


>gi|305680806|ref|ZP_07403613.1| N-6 DNA Methylase [Corynebacterium matruchotii ATCC 14266]
 gi|305659011|gb|EFM48511.1| N-6 DNA Methylase [Corynebacterium matruchotii ATCC 14266]
          Length = 455

 Score = 37.6 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 39/213 (18%)

Query: 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261
              +  T++DP CG GG L                   +   G ++ P    V      +
Sbjct: 83  GTTVTDTVFDPACGIGGTLLALAR-----------AHDVAIVGADIAPTAVDVAKLQARL 131

Query: 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKR-FHYCLSNPPFGK--KWEKDKDAVEKEHKN 318
             + +D         +   +L+    + +R +   +   P  +       ++      +N
Sbjct: 132 LGVTADF--------RCRDSLAHAASSSRRQYRTVVVEAPLNQQADTGHCQNLARSFDEN 183

Query: 319 GELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR 378
             +          +     FL+     L            VL     F+       +E+R
Sbjct: 184 IMVP---------ARAHEAFLLCTLRHLTSDGY-----GYVL---TSFSPGVSHQSAELR 226

Query: 379 RWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411
           R LL    +EAI+ LP      +++ T LW+L 
Sbjct: 227 RLLLRRRQVEAIIQLPEKFLAYSHVNTLLWVLR 259


>gi|189499712|ref|YP_001959182.1| type III restriction system methylase [Chlorobium phaeobacteroides
           BS1]
 gi|189495153|gb|ACE03701.1| type III restriction system methylase [Chlorobium phaeobacteroides
           BS1]
          Length = 214

 Score = 37.6 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 29/144 (20%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNH----VA 228
              +  TP  +V     L+          +  +     +P CG+G FL   +      V 
Sbjct: 12  DHGEVFTPAWMVEAMLDLVKGE-------TERIDSRFLEPACGSGNFLVKVLQRKLTAVE 64

Query: 229 DCGSHHKIPPILV-------PHGQELEPETHAVCVAGML------IRRLESDPRRDLS-- 273
                                +G EL  +  A C A ML      +   ESD     +  
Sbjct: 65  LKYGKSDFERRHYALYAIMCIYGIELLSDNIAECRATMLEILAEYLNLEESDDLYRAALY 124

Query: 274 ---KNIQQGSTLSKDLFTGKRFHY 294
              +N+  G  L       K   +
Sbjct: 125 VLSQNLIFGDALKMRTHDDKAITF 148


>gi|313667089|gb|ADR72988.1| RM.BsmFI [Geobacillus stearothermophilus]
          Length = 879

 Score = 37.6 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 60/233 (25%), Gaps = 16/233 (6%)

Query: 187 ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246
              +L      +          + DP  G+G  L      +           +     ++
Sbjct: 297 LANILAILSKYVLGRELNENEIICDPAAGSGNLLAA----IRAGFDTINPKQLWANDKEQ 352

Query: 247 LEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWE 306
           L  E  ++ +  M             S  +        +          L NPP+     
Sbjct: 353 LFLELLSIRLGLMF----PLIVSPTNSPLVTGKDICDLNKNDFTNVSVVLMNPPY-VSGV 407

Query: 307 KDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366
           KD    +K  K          + K + G +         +           +V     L 
Sbjct: 408 KDPITKKKVAKRIFDI--SGTMSKTNIGQVGIEAPFLELITNLVKDNTIIGVVFPKQYL- 464

Query: 367 NGRAGSGESE-IRRWLLENDLIEAIVALP-TDLFFRTNIATYLWILSNRKTEE 417
              A   E+E +R +LL +  +  I   P   +F      T + I        
Sbjct: 465 --TARGREAEALRNYLLNDFGLNLIFIYPREGIFKDVTKDTVVLIGRKNNPSS 515


>gi|299883433|ref|YP_003738985.1| putative restriction/modification enzyme [Halalkalicoccus jeotgali
           B3]
 gi|300712779|ref|YP_003738591.1| putative restriction/modification enzyme [Halalkalicoccus jeotgali
           B3]
 gi|299126463|gb|ADJ16800.1| putative restriction/modification enzyme [Halalkalicoccus jeotgali
           B3]
 gi|299126859|gb|ADJ17194.1| putative restriction/modification enzyme [Halalkalicoccus jeotgali
           B3]
          Length = 1383

 Score = 37.6 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 47/181 (25%)

Query: 147 PDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD-----DALFKE 201
           PD   + V+     +L    G    +    + TP  VV       L P      + L   
Sbjct: 455 PDEGGNIVVEEGEIYLTTDSGE--RKATGSYYTPEYVVEYIVENTLGPLIDDIYEDLLAR 512

Query: 202 SPGMIR----------------TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV---- 241
            P                     + DP  G+G FLT+++N++A      +          
Sbjct: 513 DPFDKEGGGQFAQDFAERVFNLKILDPAMGSGHFLTNSVNYLARQIIEAQQRQDEQMDEK 572

Query: 242 -------------------PHGQELEPETHAVCVAGMLIRRLESD-PRRDLSKNIQQGST 281
                               +G +L P    +    + +R L ++ P   L  +++ G++
Sbjct: 573 TTDEHRDINWARRKVAQRCIYGVDLNPLATELAKVSLWLRTLAAEQPLAFLDHHLKTGNS 632

Query: 282 L 282
           L
Sbjct: 633 L 633


>gi|255729162|ref|XP_002549506.1| predicted protein [Candida tropicalis MYA-3404]
 gi|240132575|gb|EER32132.1| predicted protein [Candida tropicalis MYA-3404]
          Length = 491

 Score = 37.6 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 50/170 (29%), Gaps = 15/170 (8%)

Query: 94  TNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDR 153
               +N   Y    +   ++IFE  D    I    +      + + F  I+         
Sbjct: 201 QKILDNPNEYSNLPNSIVQSIFEYVDI--LIKEPPRDDAFEDVIERF-MIDYP------D 251

Query: 154 VMSNIYEHLIRRFGSEVSEGAEDFMTPRDV--VHLATALLLDPDDALFKESPGMIRTLY- 210
            +  +Y  LI  F    +         + +      +  +L  D  L  E   +I+    
Sbjct: 252 QLGKLYIKLIEFFKKRNNIAKIRHYYNKGIKQCKTLSDFVLIYDSYLEFEEDQLIKLAEK 311

Query: 211 DPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260
           DP       L+  M+   +  ++ K+        Q +           ++
Sbjct: 312 DP---ESNLLSYFMDEFEELINNRKMLINDTLLRQNINDLDAWFARFDLV 358


>gi|281491089|ref|YP_003353069.1| DNA methylase, putative [Lactococcus lactis subsp. lactis KF147]
 gi|161702121|gb|ABX75590.1| DNA methylase, putative [Lactococcus lactis subsp. lactis KF147]
          Length = 927

 Score = 37.6 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 41/162 (25%), Gaps = 46/162 (28%)

Query: 208 TLYDPTCGTGGFLTDAMN--------------HVADCGSHHKIPPIL----------VPH 243
              DP CG+G FL                   H+ +      +                 
Sbjct: 364 KFLDPACGSGNFLIITYKELRKLEIQCLVEIRHLREILGEKDVYQGNLFKQSQIRLNQFS 423

Query: 244 GQELEPETHAVCVAGMLI--RRLESDPRR------------DLSKNIQQGSTLSKDL--- 286
           G EL+   H V    + I   ++  +                 + NI  G+ L  D    
Sbjct: 424 GIELDDFAHEVARLSLYIAEHQMNIEMTATLADYQPRTLPLQEAGNIVHGNALRVDWNEV 483

Query: 287 --FTGKRFHYCLSNPPFGKKWE---KDKDAVEKEHKNGELGR 323
                    Y + NPP+    +     K  ++         R
Sbjct: 484 VPHEADDEVYIMGNPPYIGTAKQTVNQKKDIDSLFSEVPNHR 525


>gi|149189595|ref|ZP_01867878.1| putative type II restriction enzyme methylase subunit [Vibrio
           shilonii AK1]
 gi|148836574|gb|EDL53528.1| putative type II restriction enzyme methylase subunit [Vibrio
           shilonii AK1]
          Length = 1236

 Score = 37.6 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 97/343 (28%), Gaps = 53/343 (15%)

Query: 27  KHTDFGKVILPFTLLRRLECALEP---TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNT 83
           + ++FG+    F +L       E     +S + E  LA           +    +     
Sbjct: 115 EGSEFGQ---GFEILAHAADVAEDLGLNKSDIVEMLLAGDKEEELYRELLLAQCHQLSKI 171

Query: 84  SEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYK-------- 135
             +    L    T   L   +       K +  D    +    +E  G LY+        
Sbjct: 172 MPFMFEKLD-DATELLLPDNLTKTDSILKELVNDVPEDNW-REIEVIGWLYQFYISEHKD 229

Query: 136 -ICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG----------SEVSEGAEDFMTPRDVV 184
            +       E  P        + I ++L++             SE+ +  E F+TP +  
Sbjct: 230 AVIGKVVKKEDIPAATQLFTPNWIVKYLVQNSLGRQWLATYPDSELKDKMEYFITPAEQS 289

Query: 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI----- 239
                 L                 + DP CG+G  L +    + +               
Sbjct: 290 DEVIEQL---KAITPTSIDPEQIKVLDPACGSGHILVEVYEVLREIYLERGYRLREIPEL 346

Query: 240 ---LVPHGQELEPETHAVCVAGMLIRRLESD-------PRRDLSKNIQQ--------GST 281
                 +G +++     +    +L++  E D           +  NI           + 
Sbjct: 347 ILTKNIYGLDIDDRAAQMAAFAVLMKAREDDRRIFSRVDDNRIQLNIHSIQSTEHLDINK 406

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRF 324
           L +DL   +       N  F +   +  +   +  K  EL R+
Sbjct: 407 LWQDLDLDENKQAGSMNDLFAEPQLEIAEPSTENKKYLELLRY 449


>gi|25011394|ref|NP_735789.1| hypothetical protein gbs1352 [Streptococcus agalactiae NEM316]
 gi|24412932|emb|CAD47011.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 2066

 Score = 37.6 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 48/392 (12%), Positives = 98/392 (25%), Gaps = 82/392 (20%)

Query: 50  PTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS--LSTLGSTNTRNNLESYIASF 107
            T+  +  +       +   +        +FY  +     ++ L +      LES   S 
Sbjct: 364 ETKEVIEAEQAIAVDFSFPEDL------TNFYPKTARDKVVANLVAIRLVKELESANQSA 417

Query: 108 SDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFG 167
           + N + I   +                 +   F        +     +  +     + + 
Sbjct: 418 TPNEQEILAKYVGW------------GGLANEFFDEYNPKFSKEREELKTLVSD--KEYS 463

Query: 168 SEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227
                    + T   ++    +          ++       + DP+ GTG F      H+
Sbjct: 464 DMKQSSLTAYYTDPLLIRQMWS--------KLEQDGFSGGKILDPSMGTGNFFAAMPAHL 515

Query: 228 ADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287
            +              G EL+  T A+              +   + +I+         F
Sbjct: 516 REKSE---------LCGVELDTITGAIAK------------QLHSNVHIEV-KGFETVAF 553

Query: 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
               F   +SN PF      D                        D   +   +   K  
Sbjct: 554 NDNSFDLVISNVPFANIRIADNQY---------------------DKPYMIHDYFVKKSL 592

Query: 348 LPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIA 404
              + GG+ AI+        G        I + + E       V LP   F     T++ 
Sbjct: 593 DLVHDGGQVAII-----SSTGTMDKRTENILQDIRETTDFLGGVRLPDTAFKAIAGTSVT 647

Query: 405 TYLWILSNRKTEERR-GKVQLINATDLWTSIR 435
           T +        +  +   +    +       R
Sbjct: 648 TDMLFFQKHLNKGYQADDIAFSGSVRYDKDER 679


>gi|288869942|ref|ZP_06112364.2| 1,4-alpha-glucan branching enzyme [Clostridium hathewayi DSM 13479]
 gi|288869027|gb|EFD01326.1| 1,4-alpha-glucan branching enzyme [Clostridium hathewayi DSM 13479]
          Length = 997

 Score = 37.6 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 45/171 (26%), Gaps = 22/171 (12%)

Query: 435 RNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG 494
           +  G ++    + +  +I D          ++ ++ +    ++I   RP        K  
Sbjct: 830 KKPGPQKTADKEPETGKITD------KKPEAKKIEDKKTEPQKIADKRPEAKKIEDKKPE 883

Query: 495 LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKA-- 552
             ++       K     +     I     +            K + K  EAK ++ K   
Sbjct: 884 TQKIADKKPEAKKIEDKKPETRKIADKKPEAKKIEDKKPETQKIADKKPEAKKIEDKKPE 943

Query: 553 ------SKSFIVAFINA------FGRKDPRADPVTDVNGEW--IPDTNLTE 589
                  K       +          K P A  + D   E     D    +
Sbjct: 944 TQKIADKKPEAKKIEDKKPETQKITDKKPEAKKIEDKKTEPKKKADRGPRD 994


>gi|295112607|emb|CBL31244.1| Helicase conserved C-terminal domain./SNF2 family N-terminal
           domain. [Enterococcus sp. 7L76]
          Length = 2266

 Score = 37.6 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 68/243 (27%), Gaps = 51/243 (20%)

Query: 190 LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
           L++       K        + DP  GTG F       + +             +G E++ 
Sbjct: 732 LIIKEIYRSLKRFGFSSGRILDPAMGTGNFFAAIPPEMREQSE---------LYGVEIDS 782

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
            +  +               +   K + Q     + LFT       ++N PF      D 
Sbjct: 783 LSARLSK-------------QLHQKTVIQEKGFEETLFTENSLDVVVANVPFADIRLTDN 829

Query: 310 DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
             ++K + +                          +     + GG  A++ SS  +    
Sbjct: 830 KTLKKYYIHDY---------------------FIKRSIDLVHEGGIVAVITSSGTMDKKD 868

Query: 370 AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNRKTEERRGKVQLIN 426
           A       R+ L     +   V LP   F     T + T +         + + + QL+ 
Sbjct: 869 AS-----FRKELSHKADLIGGVRLPNTAFKQIAGTEVTTDVLFFRKHSGIQEQAEEQLLE 923

Query: 427 ATD 429
              
Sbjct: 924 RRQ 926


>gi|323339347|ref|ZP_08079634.1| adenine-specific methyltransferase [Lactobacillus ruminis ATCC
           25644]
 gi|323093236|gb|EFZ35821.1| adenine-specific methyltransferase [Lactobacillus ruminis ATCC
           25644]
          Length = 335

 Score = 37.6 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 77/250 (30%), Gaps = 40/250 (16%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             MTP  +  L   LL    +   + +        D   GTG      +N + + G    
Sbjct: 98  HQMTPDSIGFLTAYLLQQVYEKKDETN------FLDLCVGTGNLAAVVINALKNNG---- 147

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
               +   G + +     +      +  L+         N+     L  D     +    
Sbjct: 148 -FKNIHGFGIDNDDTLLTIASIESQLCDLDL--------NLYHQDAL--DKSLIPQADVI 196

Query: 296 LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
           +S+ P G     ++    + H       F            L +    + L+      G 
Sbjct: 197 VSDLPVGWYPLDERAEGYETHAKEGHS-FVH---------FLLIEQALDNLKE-----GG 241

Query: 356 AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             + L  S +F          + +++ +N  +++++ LP  +F        + IL  +  
Sbjct: 242 IGMFLIPSSMFESEES---LPLLKFIQKNGYLQSLINLPGAMFASKKSEKAILILQKKGA 298

Query: 416 E-ERRGKVQL 424
           + ++   V L
Sbjct: 299 KSKQANPVLL 308


>gi|195143789|ref|XP_002012879.1| GL23691 [Drosophila persimilis]
 gi|194101822|gb|EDW23865.1| GL23691 [Drosophila persimilis]
          Length = 1477

 Score = 37.6 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 479  KVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKE 538
            KV +  R       +G A    D+  R+     ++   + L  M + + P    +   +E
Sbjct: 1112 KVHQAKRKRLSKSFSGAADELEDMEVRQEHKRAKNEHDESLGSMEEDMPPTESPDIPKEE 1171

Query: 539  SIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDV-NGEWIPDTNLTEYENVP 594
            S K  E ++  ++  K             D       D    +  PD +  E EN P
Sbjct: 1172 SPKKQEEQSEGLQQPKDQ---------EMDEEMPSTKDTPKEDPEPDPSKKEAENTP 1219


>gi|12045114|ref|NP_072925.1| HemK family modification methylase [Mycoplasma genitalium G37]
 gi|255660258|ref|ZP_05405667.1| HemK family modification methylase [Mycoplasma genitalium G37]
 gi|2496352|sp|Q49404|Y259_MYCGE RecName: Full=Uncharacterized protein MG259
 gi|1045951|gb|AAC71479.1| modification methylase, HemK family [Mycoplasma genitalium G37]
 gi|166078831|gb|ABY79449.1| modification methylase, HemK family [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 456

 Score = 37.6 bits (86), Expect = 7.1,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 72/254 (28%), Gaps = 48/254 (18%)

Query: 107 FSDNAKAIFEDFDFS-STIARLEKAGLL--YKICKNFSGIELHPDTVPDRVMSNIYEHLI 163
           F+     I E + F   TI +L K+ LL   ++                 +   +    +
Sbjct: 20  FNGVFLTILEHYGFQFKTIDKLWKSKLLITSELTDKIKQQLKCYFIEKIPLPYLLGTIQL 79

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
           R+   +  +G      PR          +D    +   +   I+T  D  CG+G      
Sbjct: 80  RKLTFKTKKG---VFIPR----------IDSLALIASVNLKKIKTALDLCCGSGTLAIAL 126

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
                      K    L  +G +++ +   +     LI  +  +                
Sbjct: 127 K----------KKCDTLDVYGSDIDIQALKLAQQNALINNVSINWIEAD----------W 166

Query: 284 KDLFTGKR--FHYCLSNPPF----------GKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331
            D F   +      ++NPP+            + +       K         F   L K 
Sbjct: 167 FDCFNKIKTPIDLIVTNPPYLKKTQLNKTLNYEPKHSLVFQNKNSYFAYKQLFNLLLTKR 226

Query: 332 SDGSMLFLMHLANK 345
           S   ++F   L  K
Sbjct: 227 SIKQLIFECSLFQK 240


>gi|329963600|ref|ZP_08301078.1| helicase protein [Bacteroides fluxus YIT 12057]
 gi|328528505|gb|EGF55478.1| helicase protein [Bacteroides fluxus YIT 12057]
          Length = 2040

 Score = 37.6 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 53/248 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  V       +    D            + DP+ GTG    +A++   D 
Sbjct: 92  NSVLTAFYTPPKVADAIVEAI---WDTRIAPQ-----RILDPSAGTG-VFVNAVDF-HDP 141

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFT 288
            +           G              ++++ L  + R      + I       +  + 
Sbjct: 142 YAEITCFEKDPATG--------------LILKHLHPEKRVRIQGFERI-------EPKYA 180

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G  +   +SN PFG     D    +             G   + +       +   K   
Sbjct: 181 GY-YDVAVSNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHN-------YFFMKSVD 227

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIAT 405
               GG  A + S   L    A  G   +R WL+      + + LP +LF     T + +
Sbjct: 228 MVREGGLVAFITSQGVL---NAEQG-RPVREWLMNRCEPVSAIRLPNNLFTEHAGTEVGS 283

Query: 406 YLWILSNR 413
            L IL  +
Sbjct: 284 DLVILQKK 291


>gi|295397611|ref|ZP_06807687.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
 gi|294974149|gb|EFG49900.1| type I restriction-modification system [Aerococcus viridans ATCC
           11563]
          Length = 128

 Score = 37.6 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 414 KTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDYRT 472
           K       V  I+A++ +T  +N    +  + +    +I + Y+ RE+ +    +    
Sbjct: 2   KKNRDSRDVLFIDASNEFTKAKN----QNKLEEKHLDKIYETYLKREDVEKYAHVATYE 56


>gi|291515140|emb|CBK64350.1| Helicase conserved C-terminal domain [Alistipes shahii WAL 8301]
          Length = 2040

 Score = 37.6 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 53/248 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  V       +    D            + DP+ GTG    +A++   D 
Sbjct: 92  NSVLTAFYTPPKVADAIVEAI---WDTRIAPQ-----RILDPSAGTG-VFVNAVDF-HDP 141

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFT 288
            +           G              ++++ L  + R      + I       +  + 
Sbjct: 142 YAEITCFEKDPATG--------------LILKHLHPEKRVRVQGFERI-------EPKYA 180

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G  +   +SN PFG     D    +             G   + +       +   K   
Sbjct: 181 GY-YDVAVSNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHN-------YFFMKSVD 227

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIAT 405
               GG  A + S   L    A  G   +R WL+      + + LP +LF     T + +
Sbjct: 228 MVREGGLVAFITSQGVL---NAEQG-RPVREWLMNRCEPVSAIRLPNNLFTEHAGTEVGS 283

Query: 406 YLWILSNR 413
            L IL  +
Sbjct: 284 DLVILQKK 291


>gi|319651847|ref|ZP_08005972.1| adenine-specific methyltransferase [Bacillus sp. 2_A_57_CT2]
 gi|317396499|gb|EFV77212.1| adenine-specific methyltransferase [Bacillus sp. 2_A_57_CT2]
          Length = 327

 Score = 37.6 bits (86), Expect = 7.2,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 103/312 (33%), Gaps = 50/312 (16%)

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161
           +Y+ + ++  + +F +      ++ L     L K  ++ +       +     +   ++ 
Sbjct: 27  TYLEALAETGENLFHESILQDELSEL-TVKRLRKSYESIN-----LSSYSKEEIRKSFQL 80

Query: 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLT 221
            I +   E +      MTP  V  L   L+        K        L DP  GTG  LT
Sbjct: 81  AILKGMKE-NVQPNHQMTPDAVGMLMGYLV-------EKFIQEKSFRLLDPAVGTGNLLT 132

Query: 222 DAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281
             MNH  D              G E++     +                    N     +
Sbjct: 133 TVMNHQKDKTVEA--------TGIEIDDLLIKLAYIN-----ANLQEHPIQFFN---QDS 176

Query: 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
           L + LF  +     +S+ P G  +  D  + E + K  E   +            LF+  
Sbjct: 177 L-EPLFI-EAADAVVSDLPIGY-YPNDVRSAEYKLKADEGHSYSHH---------LFIEQ 224

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
             N ++     GG    ++ +  LF         ++  ++ E   I+ +V LP  +F   
Sbjct: 225 SMNHVKS----GGYLFFIIPNG-LFESEQAP---KLHEFIKETAYIQGLVQLPLTMFKNE 276

Query: 402 NIATYLWILSNR 413
             A  ++IL  +
Sbjct: 277 KAAKSIFILQKK 288


>gi|304438058|ref|ZP_07398002.1| type IIS restriction enzyme R and M protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369012|gb|EFM22693.1| type IIS restriction enzyme R and M protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 1200

 Score = 37.6 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 26/152 (17%)

Query: 43  RLECALEPTRSAVREKYLAFGGSNID-LESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLE 101
             +  LEP       +        +        + G  F     Y           + L 
Sbjct: 335 FFDDYLEPLFYEGLNQNRGDQAFFLPLHSRIPFLNGGLFEELEGYDWKN-NDFCIPDELF 393

Query: 102 SYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTV----PDRVMSN 157
           S       +A  I + FD  +                 F+ +E  P          ++  
Sbjct: 394 SNADENGRDADGILDVFDRYN-----------------FTMVEDEPMEREVAVDPEMLGK 436

Query: 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATA 189
           ++E+L+     +  +    F TPR++VH    
Sbjct: 437 VFENLLD---VKDRKSKGAFYTPREIVHYMCQ 465


>gi|256026516|ref|ZP_05440350.1| hypothetical protein PrD11_00705 [Fusobacterium sp. D11]
 gi|289764528|ref|ZP_06523906.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289716083|gb|EFD80095.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 864

 Score = 37.6 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 94/340 (27%), Gaps = 83/340 (24%)

Query: 36  LPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
           L   L+R + C          +     G    DL++     G  F +        L   +
Sbjct: 122 LNLFLIRIIFCLFAEDTEMFEK-----GSFTNDLKTLTSRDGSDFNDVITLIFEKLSKLD 176

Query: 96  TR---NNLESY----IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
                  L+ Y       F++  K I     F+S + +L        I +    +     
Sbjct: 177 MNVKYEYLKKYPYVNGNLFNEEHKKI----HFNSKLRKL--------IIEAGELLNWG-- 222

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDP---------DDALF 199
            V   ++ ++ + +     SE         T    +      L             D+  
Sbjct: 223 KVNPDILGSMLQAV---ANSETRSTLGMHYTSVPNIMKVIKPLFLDELYSEFFNIKDSDL 279

Query: 200 KESPGM-----------IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL-------- 240
           K++  +               +DP CG+G FL  A   +           +         
Sbjct: 280 KDNTKLEKLEKLLDRIGKMKFFDPACGSGNFLIIAYKELRKLEIEIYELIVFIKQKTFIY 339

Query: 241 -------VPHGQELEPETHAVC---------VAGMLIRRLESDPRRDLSK-----NIQQG 279
                    +G E++   H V             M ++    +  R+         I+  
Sbjct: 340 EPSIKLSQFYGIEIDDFAHDVAMLSLWIADHQMNMELKERLQNAFRNTLPLQKVGAIRCA 399

Query: 280 STLSKDL-----FTGKRFHYCLSNPPFGKKWEKDKDAVEK 314
           ++L  D       T     +   NPP+     +DK+  + 
Sbjct: 400 NSLKIDWEEVCPHTKDDEVFIFGNPPYLGAKLQDKEQKKD 439


>gi|293376791|ref|ZP_06623012.1| putative methylase [Turicibacter sanguinis PC909]
 gi|325838183|ref|ZP_08166519.1| hypothetical protein HMPREF9402_2151 [Turicibacter sp. HGF1]
 gi|292644573|gb|EFF62662.1| putative methylase [Turicibacter sanguinis PC909]
 gi|325490854|gb|EGC93155.1| hypothetical protein HMPREF9402_2151 [Turicibacter sp. HGF1]
          Length = 390

 Score = 37.6 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 35/147 (23%)

Query: 204 GMIRTLYDPTCGTGGFLTDAM---------------------------NHVADCGSHHKI 236
              R L DP CG+G  L +A                              V D       
Sbjct: 188 KPERLLVDPFCGSGTILIEAALIGNNIAPGLNRQFVCEDWPSMDPEIFEQVRDSARKAIK 247

Query: 237 PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
              L   G +++ +             +                  S    +  ++ Y +
Sbjct: 248 NNSLRMFGYDIDGQVLRTARQNAEKAGVAKAIEFHQLD----FHKFS----SNYKYAYMI 299

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGR 323
           +NPP+G++  ++ +  +   K G + R
Sbjct: 300 TNPPYGERIGEEDEVFKLNKKLGIMKR 326


>gi|260555269|ref|ZP_05827490.1| yeeA [Acinetobacter baumannii ATCC 19606]
 gi|260411811|gb|EEX05108.1| yeeA [Acinetobacter baumannii ATCC 19606]
          Length = 835

 Score = 37.6 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 31/207 (14%)

Query: 39  TLLRRLE-CALEPTRSAVREKY--LAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTN 95
             L RL  C         ++K    A   SN D      + G  F            + +
Sbjct: 183 IFLSRLLFCYFAEDTEIFKDKQFTSAISKSNEDGSDLSALIGRLFKVL------NQSAED 236

Query: 96  TRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVM 155
              +L  Y+A F          F     + +  +      + +  + ++     +   + 
Sbjct: 237 RETDLPDYLADF-PYVNGGL--FKDDIQVPKFTRKSR-RILIECGAELDW--SDINPDIF 290

Query: 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPD--DALFKESPGMIR------ 207
            ++++ ++    +E         T    +      L   D  + L K    + +      
Sbjct: 291 GSMFQAVVH---TEQRSTMGQHYTSVPNIMKVIEPLFLNDLYEELEKNQDSINKLLKLQQ 347

Query: 208 -----TLYDPTCGTGGFLTDAMNHVAD 229
                  +DP CG+G FL  A   +  
Sbjct: 348 RLGQLKFFDPACGSGNFLIIAYKELRK 374


>gi|71275695|ref|ZP_00651980.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 gi|71897849|ref|ZP_00680075.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
 gi|71163586|gb|EAO13303.1| Helix-turn-helix motif [Xylella fastidiosa Dixon]
 gi|71732404|gb|EAO34458.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1]
          Length = 170

 Score = 37.6 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 5   TGSAASLANFIWKNAEDLWGDFKHTDFGKV 34
           T +   +   +W  A  + G+     F   
Sbjct: 90  TPTTKPMEQMLWDAACSIRGEKDAAKFKDY 119


>gi|299531095|ref|ZP_07044508.1| hypothetical protein CTS44_09927 [Comamonas testosteroni S44]
 gi|298721052|gb|EFI61996.1| hypothetical protein CTS44_09927 [Comamonas testosteroni S44]
          Length = 372

 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 59/212 (27%), Gaps = 48/212 (22%)

Query: 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGS 232
               + T  + +   + LL  PD             ++DP CG G  L D    +     
Sbjct: 11  KNGYYPTDEESIRRISNLLQMPDKGGI--------RMFDPCCGEGSALADLRQLL---TV 59

Query: 233 HHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G EL+ +        +L R + SD    +                 +  
Sbjct: 60  DRGRIGGAEAFGIELDRDRARHAKG-ILDRVIHSDVHDVV--------------LKPRSM 104

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
                NPP+G              +  +  R    L +       FL    + L      
Sbjct: 105 GLLFLNPPYGFGVADQSAQRSLLAEADKAER----LERT------FLRKTVSYLAY---- 150

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384
           GG    ++    L        + EIR +L+ N
Sbjct: 151 GGVLVYIIPHYAL--------DDEIRSYLVRN 174


>gi|332362019|gb|EGJ39821.1| SNF2 family protein [Streptococcus sanguinis SK49]
          Length = 2077

 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 75/276 (27%), Gaps = 59/276 (21%)

Query: 164 RRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223
             + +        + T   ++      LLD               + DP+ GTG F    
Sbjct: 475 SEYSTMKQSSLTAYYTDPMIIRQIWQKLLDDGFE--------GGRILDPSMGTGNFFAAM 526

Query: 224 MNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283
              + +             +G EL+  T A+              +   + +I+      
Sbjct: 527 PRSIREKSE---------LYGVELDSVTGAIAK------------QLHPNTHIEV-RGFE 564

Query: 284 KDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343
           +  +    F   L+N PFG     DK+                      D   +   +  
Sbjct: 565 EVPYQNNSFDLVLTNVPFGNFRIADKNY---------------------DKPYMIHDYFV 603

Query: 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLF---FR 400
                    GG+ +I+        G        + + +  N      V LP   F     
Sbjct: 604 KHSLDLVRDGGQVSII-----SSIGTMDKRTDNVLQEIKSNTHFLGGVRLPDTAFKKIAG 658

Query: 401 TNIATYLWILSNRKTEERRGKVQLINATDLWTSIRN 436
           T + T L      + +    +  + + + L+   + 
Sbjct: 659 TRVTTDLLFFQKDQAKNLNEEELVFSGSILFEEDKR 694


>gi|310657890|ref|YP_003935611.1| hypothetical protein CLOST_0580 [Clostridium sticklandii DSM 519]
 gi|308824668|emb|CBH20706.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 570

 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 75/309 (24%), Gaps = 33/309 (10%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIR--TLYDPTCGTGGFLTDAMNHVADCGSHHK 235
            T   + +      L      F+     I    + DP  G   F       +        
Sbjct: 3   FTDDKISNFMVKRSLKLLSDSFESKNKSIEAAKILDPCIGGASFDIALFQALEQEYIKSY 62

Query: 236 I---PPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRF 292
                      G ++E     +    +    +          N++    L+   F  + F
Sbjct: 63  KLSEFLKTNFIGIDIEASAIELAKENLKKVGISYADNL----NLKCKDYLTD--FNEQGF 116

Query: 293 HYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNG 352
              + NPP+       +              FG    +     M +      K     N 
Sbjct: 117 DLIIGNPPYIG-----EKGNRAVFSKVRDTEFGKKYYEKG---MDYFYFFIEKSLEILNE 168

Query: 353 GGRAAIVLSSSPLFNGRAGSGESEIRRW-----LLENDLIEAIVALPTDLFFRT-NIATY 406
            G  A++  +       A      IR       +++   + A        F       + 
Sbjct: 169 DGILAMITPAYWTRADSASKLREAIRARASFVDVIDFGELRA--------FKDAVGHHSL 220

Query: 407 LWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSR 466
           ++ L  +KT E    +      DL   + N      +  + +     + +        S 
Sbjct: 221 IFFLQKKKTAEFSYYLINETKNDLGEILENILYGINMSPEPEISISKENHSDFIKSCVSS 280

Query: 467 MLDYRTFGY 475
                   Y
Sbjct: 281 EFCMNYSPY 289


>gi|229551842|ref|ZP_04440567.1| adenine specific DNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
 gi|229314786|gb|EEN80759.1| adenine specific DNA methyltransferase [Lactobacillus rhamnosus
           LMS2-1]
          Length = 337

 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 94/337 (27%), Gaps = 51/337 (15%)

Query: 89  STLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPD 148
             L ST+     E+     S               +   E    L  +          P+
Sbjct: 22  QQLKSTDIAAITEAGEDLSSGEVMQ-------EDGLPNDEAKKKLEALFGQVKLATYEPE 74

Query: 149 TVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRT 208
                 +    + ++ +            +TP  +  LAT +       +F +       
Sbjct: 75  -----EIRQALQLVLVKAIKVDGIEPNKQITPDAMASLATFMAT-----VFDQQQPNQLK 124

Query: 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDP 268
           + D   G+G  L   MN +            +  +G + +    AV      ++ L+ + 
Sbjct: 125 VADLAVGSGNLLFAVMNQLHKA-----RNVTVKGYGVDNDEALLAVAGMSSSLQHLDVEL 179

Query: 269 RRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328
                        L  D    K     +S+ P G     ++                   
Sbjct: 180 F--------HQDAL--DGLLFKDIDVVVSDLPVGYYPVDERAKKFATAAKKGH------- 222

Query: 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388
                 S    + +   +++   GG    +    S +F     +G +    WL E    +
Sbjct: 223 ------SYAHHLLIEQSMKVLKPGG--LGMFYVPSRVFQSEEAAGLTA---WLAEKTYFQ 271

Query: 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGK-VQL 424
            ++ LP D F        L IL     + +R K V L
Sbjct: 272 GLLNLPDDFFADKQAEKSLLILQKPSQDVKRAKQVLL 308


>gi|117621861|ref|YP_854497.1| hypothetical protein BAPKO_5526 [Borrelia afzelii PKo]
 gi|110891320|gb|ABH02478.1| hypothetical protein BAPKO_5526 [Borrelia afzelii PKo]
          Length = 725

 Score = 37.6 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +    + TP D+        +   +   K    +   + D +CG+G FL   ++++ + 
Sbjct: 268 KKNGAYYTPEDLTDFMV---VSSIEEQLKNKSPLDIKIIDNSCGSGHFLISCLDYLTEK 323


>gi|134098872|ref|YP_001104533.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005770|ref|ZP_06563743.1| hypothetical protein SeryN2_14718 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133911495|emb|CAM01608.1| hypothetical protein SACE_2307 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 323

 Score = 37.6 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 52/188 (27%), Gaps = 20/188 (10%)

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
            TP    H    +L                 + DP CG G  L +A            I 
Sbjct: 35  YTPDSTAHP-AKMLPAIARHAITHYTQPGDLVLDPMCGIGTTLVEA------------IH 81

Query: 238 PILVPHGQELEPETHAVCVAGMLI-RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCL 296
                 G E EP    +    + +      D R ++ +   +  +         +    +
Sbjct: 82  TGRHALGVEYEPHWAHIARDNIALAHAAGIDHRGEVIQGDARQLSSLLPSTYLGQAALAV 141

Query: 297 SNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGS------MLFLMHLANKLELPP 350
           ++PP+G               +    R+G  L + +  +      +     +   L    
Sbjct: 142 TSPPYGPSTHGQVVTQPDRIVHKFHHRYGNTLDRGNLANIGHQRLLTGFTRILTGLRHYL 201

Query: 351 NGGGRAAI 358
             GG  AI
Sbjct: 202 RPGGHLAI 209


>gi|332877261|ref|ZP_08445010.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684851|gb|EGJ57699.1| helicase protein [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 2040

 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 53/248 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  V       +    D            + DP+ GTG    +A++   D 
Sbjct: 92  NSVLTAFYTPPKVADAIVEAI---WDTRIAPQ-----RILDPSAGTG-VFVNAVDF-HDP 141

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFT 288
            +           G              ++++ L  + R      + I       +  + 
Sbjct: 142 YAEITCFEKDPATG--------------LILKHLHPEKRVRIQGFERI-------EPKYA 180

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G  +   +SN PFG     D    +             G   + +       +   K   
Sbjct: 181 GY-YDVAVSNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHN-------YFFMKSVD 227

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIAT 405
               GG  A + S   L    A  G   +R WL+      + + LP +LF     T + +
Sbjct: 228 MVREGGLVAFITSQGVL---NAEQG-RPVREWLMNRCEPVSAIRLPNNLFTEHAGTEVGS 283

Query: 406 YLWILSNR 413
            L IL  +
Sbjct: 284 DLVILQKK 291


>gi|26247145|ref|NP_753185.1| hypothetical protein c1271 [Escherichia coli CFT073]
 gi|227888004|ref|ZP_04005809.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|300982500|ref|ZP_07176154.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|26107546|gb|AAN79745.1|AE016759_19 Hypothetical protein c1271 [Escherichia coli CFT073]
 gi|227835000|gb|EEJ45466.1| conserved hypothetical protein [Escherichia coli 83972]
 gi|300408732|gb|EFJ92270.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|307553019|gb|ADN45794.1| conserved hypothetical protein [Escherichia coli ABU 83972]
          Length = 98

 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 8/70 (11%)

Query: 20 EDLWGDFKHTDFGKVILPFTLLRRLECALEPTRS--------AVREKYLAFGGSNIDLES 71
           D+ G     DF + IL     R +                  +++KY        D + 
Sbjct: 3  NDVRGSVDGWDFKQYILGALFNRFISENFSSYMEYCRSRCCKKIQKKYFKGMKELADKKF 62

Query: 72 FVKVAGYSFY 81
            +    ++Y
Sbjct: 63 IAETMIQNYY 72


>gi|189465725|ref|ZP_03014510.1| hypothetical protein BACINT_02086 [Bacteroides intestinalis DSM
           17393]
 gi|189433989|gb|EDV02974.1| hypothetical protein BACINT_02086 [Bacteroides intestinalis DSM
           17393]
          Length = 2040

 Score = 37.6 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 53/248 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  V       +    D            + DP+ GTG    +A++   D 
Sbjct: 92  NSVLTAFYTPPKVADAIVEAI---WDTRIAPQ-----RILDPSAGTG-VFVNAVDF-HDP 141

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFT 288
            +           G              ++++ L  + R      + I       +  + 
Sbjct: 142 YAEITCFEKDPATG--------------LILKHLHPEKRVRIQGFERI-------EPKYA 180

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G  +   +SN PFG     D    +             G   + +       +   K   
Sbjct: 181 GY-YDVAVSNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHN-------YFFMKSVD 227

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIAT 405
               GG  A + S   L    A  G   +R WL+      + + LP +LF     T + +
Sbjct: 228 MVREGGLVAFITSQGVL---NAEQG-RPVREWLMNRCEPVSAIRLPNNLFTEHAGTEVGS 283

Query: 406 YLWILSNR 413
            L IL  +
Sbjct: 284 DLVILQKK 291


>gi|290979814|ref|XP_002672628.1| predicted protein [Naegleria gruberi]
 gi|284086206|gb|EFC39884.1| predicted protein [Naegleria gruberi]
          Length = 573

 Score = 37.6 bits (86), Expect = 7.8,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 72/213 (33%), Gaps = 14/213 (6%)

Query: 186 LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245
           L    + +  ++    S      + D   G+G F       +++  S  +I  +      
Sbjct: 318 LIKQSVNELINSKLTNSKKPKLEILDLGAGSGVFSIYVSKLISENVSDLEIKFV------ 371

Query: 246 ELEPETHAVCVAGM--LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303
           ++ P              +   +   + +  ++   + L++   +    +  L NPP+  
Sbjct: 372 DINPWALECSKFNFENNFKSCNNISGKYVQVDLTSDNNLNESKDSN-SINLILCNPPWIS 430

Query: 304 KWEKDKDAVEKEHKNGELGRFGPGL-PKISDGSMLFLMHLANKL-ELPPNGGGRAAIVLS 361
             +KD + ++ E      G F   +   I D    FL    + L +          +V +
Sbjct: 431 IEKKDYEHIQNERMK--FGSFKNTIDLSIFDTDYEFLDQFLHLLQKSQNKQTFGMLLVSN 488

Query: 362 SSPLFNGRAGSGESEIRRWLLENDL-IEAIVAL 393
              L      S    + + ++  ++ IE +V L
Sbjct: 489 VGHLVGVEQISILQALEKKIIGTNIKIEKVVTL 521


>gi|268325406|emb|CBH38994.1| conserved hypothetical protein [uncultured archaeon]
          Length = 1035

 Score = 37.3 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIR---TLYDPTCG 215
           Y+  +  +  E       + TP +VV      +       F +  G+      L DP  G
Sbjct: 316 YDTFLGEYNPEERAKLGVYYTPPEVVDYIVKSIHKLLKEKFGKEKGLAEEGLKLLDPAAG 375

Query: 216 TGGFLTDA 223
           T  F+  A
Sbjct: 376 TLTFIIRA 383


>gi|313206729|ref|YP_004045906.1| hypothetical protein Riean_1242 [Riemerella anatipestifer DSM
           15868]
 gi|312446045|gb|ADQ82400.1| hypothetical protein Riean_1242 [Riemerella anatipestifer DSM
           15868]
 gi|315023800|gb|EFT36802.1| hypothetical protein RAYM_00255 [Riemerella anatipestifer RA-YM]
          Length = 1014

 Score = 37.3 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 89/335 (26%), Gaps = 64/335 (19%)

Query: 17  KNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVA 76
           K A  L G                +R L       R+    KY      +          
Sbjct: 168 KVANSLLGRV------------IFIRYLID-----RNVELNKYHIKEKEDFYQILSNHKE 210

Query: 77  GYSFYNTSEYSLS-TLGSTNTRNNLESYIASFSDNAKA--IFEDFDFSSTIARLEKAGLL 133
            Y F+   +   +  L     + N      +   NA    I         I     + + 
Sbjct: 211 TYQFFQQVKDDFNGNLFPLKYKINDIEINENEKVNAGHLSIISSLLKGDKIH--SDSNIE 268

Query: 134 YKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD 193
             + + +    +  + V +     +YE  I     +    +  + TP  +V       + 
Sbjct: 269 LSLFEIYDFSIIPIEFVSN-----VYEKFIG---VDKQADSGAYYTPLFLVDYIQKETVS 320

Query: 194 PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH------------------K 235
                          + DP CG+G FL + +  +    +                    K
Sbjct: 321 --KYFLDNPNEYNCKVLDPACGSGIFLVETLRQIISQYTKQHPVNVDNEVEYNQYKDKLK 378

Query: 236 IPPILVPHGQELEPETHAVCVAGMLIRRLES----DPRRDLSKNIQQGSTLSKDLF---- 287
                   G + +    +V +  + I  L+S             ++  +    D F    
Sbjct: 379 SLLQNNIFGIDKDENAISVAIFSLYITLLDSLKPKSIVGFKFPLLENTNFFVADFFDTNN 438

Query: 288 ------TGKRFHYCLSNPPFGKKWEKDKDAVEKEH 316
                     F + L NPP+  K    +  + +++
Sbjct: 439 TYNTELKKHHFQFILGNPPWKTKGHPKEKQLFEKY 473


>gi|295094145|emb|CBK83236.1| valyl-tRNA synthetase [Coprococcus sp. ART55/1]
          Length = 880

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            Y P  +L DID E++ +E + A L  E+
Sbjct: 805 VYIPLEELVDIDKEIERLEKEAAKLAGEI 833


>gi|225870596|ref|YP_002746543.1| conjugative transposon DNA recombination protein [Streptococcus equi
            subsp. equi 4047]
 gi|213033071|emb|CAP20354.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi]
 gi|225700000|emb|CAW93996.1| putative conjugative transposon DNA recombination protein
            [Streptococcus equi subsp. equi 4047]
          Length = 3975

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 102/347 (29%), Gaps = 71/347 (20%)

Query: 81   YNTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIA------RLEKAGLLY 134
            Y   +  L  +   N +   E  I   S+  K   E       I         E+  +L 
Sbjct: 2120 YAPDDKYLGGIPPINYKITKEDEILPPSERLKNNIEAIKVLKEIEERHSHATKEEQDILS 2179

Query: 135  KICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED-----FMTPRDVVHLATA 189
            +    + G+    D        +  E L         + A +     F TP+ V+     
Sbjct: 2180 RYVG-WGGLSDVFDEEKGGQWKDAREFLKENLSPSEYDAARESTLTAFYTPKIVIDSIYQ 2238

Query: 190  LLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249
             +L                + +P+ GTG F+ +  + +               +G EL+ 
Sbjct: 2239 AVL--------NMGFESGNILEPSMGTGRFIGNLPDSMKGSK----------FYGVELDS 2280

Query: 250  ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDK 309
             +  +           S    +    I+      +  F+   F   + N PFG     + 
Sbjct: 2281 ISGRIA----------SRLYPNAKIQIKG---FEETTFSNNLFDVAVGNVPFG-----EY 2322

Query: 310  DAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369
              V++E++                 + L       K       GG  A +       +G 
Sbjct: 2323 KIVDREYEKN---------------NFLIHDFFFAKTLDKVRSGGVVAFI-----SSSGT 2362

Query: 370  AGSGESEIRRWLLENDLIEAIVALPTDLF---FRTNIATYLWILSNR 413
                  +IRR++ E       + LP + F     T + + +  L  R
Sbjct: 2363 MDKKSEDIRRYISERAEFLGAIRLPNNTFKGEAGTEVTSDIIFLKKR 2409


>gi|163813949|ref|ZP_02205343.1| hypothetical protein COPEUT_00102 [Coprococcus eutactus ATCC 27759]
 gi|158450819|gb|EDP27814.1| hypothetical protein COPEUT_00102 [Coprococcus eutactus ATCC 27759]
          Length = 920

 Score = 37.3 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 643 QYQPSRKLQDIDAELKGVEAQIATLLEEM 671
            Y P  +L DID E++ +E + A L  E+
Sbjct: 845 VYIPLEELVDIDKEIERLEKEAAKLAGEI 873


>gi|95930932|ref|ZP_01313662.1| restriction enzyme alpha subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133058|gb|EAT14727.1| restriction enzyme alpha subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 131

 Score = 37.3 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 391 VALPTDLFFRTNIATYLWILSNRKTEER-RGKVQL-INATDLWTSIRNEGK-KRRIINDD 447
           +++P +LF    + T + + +     +  + K        D +  I+N G+  R      
Sbjct: 1   MSMPPELFSPVGVVTCIMVFTASIPHKTSKKKTWFGYWRDDGFIKIKNLGRVDRDHTWPA 60

Query: 448 QRRQILDIYVSRE 460
            R + ++ + +RE
Sbjct: 61  IRDKWVEQFRNRE 73


>gi|254173486|ref|ZP_04880158.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
 gi|214032178|gb|EEB73008.1| conserved hypothetical protein TIGR01177 [Thermococcus sp. AM4]
          Length = 333

 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 32/184 (17%)

Query: 127 LEKAGLLYKIC--KNFSGIELHPDTVPDRVMS-NIYEHL-IRRFGSEVSEGAEDFMTP-- 180
           L+    L  +   + F      PDTV        +Y  + +R F  +  E  +    P  
Sbjct: 101 LDLPRKLGAVIHSQGFRVNLSRPDTVVRVYCGERLYAGIRLRFFDPKDFERRKAHHRPFF 160

Query: 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPIL 240
           R +       L               + L DP  G GG L +A                L
Sbjct: 161 RPIS------LHPRVSRALVNLTKARKELLDPMMGAGGILIEAG------------LLGL 202

Query: 241 VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS-TLSKDLFTGKRFHYCLSNP 299
             +G +++PE        +    ++          ++ G  T  ++LF GK F    ++P
Sbjct: 203 KVYGVDIKPEMVEGAEMNLRHYGVKDFE-------LRLGDATRLEELFPGKEFEAVATDP 255

Query: 300 PFGK 303
           P+G 
Sbjct: 256 PYGT 259


>gi|123397133|ref|XP_001301034.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121882160|gb|EAX88104.1| hypothetical protein TVAG_062280 [Trichomonas vaginalis G3]
          Length = 510

 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 17/185 (9%)

Query: 409 ILSNRKTEERRGKVQLINATDLWTSIR-NEGKKRRIINDDQRRQILDIYVSRENGKFSRM 467
           I           ++ +   + +++    N   K+  I +     I+  Y S E  K S  
Sbjct: 79  IFEEEHKLNPLTEILVPLVSKVYSIYEANPTGKKHQITEKMLADIVQTYESFEKFKGSAE 138

Query: 468 LDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMM---- 523
           L    F    I   R       + K     ++  I+  K S +       I         
Sbjct: 139 LLEAFFETVLIT--RKFVDKIDISKALTTAVKFGISNPKYSEITNKELQKICDDTTFLPI 196

Query: 524 ---------QQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPV 574
                    + +      ES  +   +     T K + SKSF+   I     +    D V
Sbjct: 197 VFNLRYDEYKNLADKQHTESIERLLPELIAFFTEKGEISKSFVKKLIKNLASRICD-DIV 255

Query: 575 TDVNG 579
               G
Sbjct: 256 KKDKG 260


>gi|325912406|ref|ZP_08174801.1| hypothetical protein HMPREF0522_1080 [Lactobacillus iners UPII
           143-D]
 gi|325475748|gb|EGC78919.1| hypothetical protein HMPREF0522_1080 [Lactobacillus iners UPII
           143-D]
          Length = 472

 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 94/290 (32%), Gaps = 40/290 (13%)

Query: 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
              TP D+V+          D +        +   + +CG G  L +A+           
Sbjct: 7   QVFTPIDIVNKM-------LDEVGYTKNLYGKKFLENSCGDGRILCEAIKRYIHDCKSFD 59

Query: 236 IPPILV-------PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288
           +    +         G E   + +  C    +   L S    +++ NI     L  +L  
Sbjct: 60  MNDNAIISGIESDFTGVEYNFDNYKKC-VDSITSLLNSYGYYNVNLNIVNLDFL--NLEF 116

Query: 289 GKRFHYCLSNPPFGKKWEKD---KDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANK 345
            ++F Y + NPP+      D   ++ V K+  + + G+F    P               K
Sbjct: 117 NEKFDYIVGNPPYISYANIDIKNREFVRKKFDSCKKGKFDYCYP------------FIEK 164

Query: 346 LELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA-LPTDLFFRTNIA 404
                +  G  A ++ ++            E+R+ +   D +  I+      +F     +
Sbjct: 165 SLKLLSKNGEIAYLIPTNI----YKNVFGKELRKII--KDPVYKILDYTKEKIFKNVLTS 218

Query: 405 TYLWILSNRKTEERRGKVQLI-NATDLWTSIRNEGKKRRIINDDQRRQIL 453
           + +    N          Q I N   +    +N G+K    N  ++  IL
Sbjct: 219 SSIVFCKNSPGSFPSIDYQDIGNNYHVVIDKKNLGEKWIFTNKTKKNDIL 268


>gi|14590253|ref|NP_142319.1| hypothetical protein PH0338 [Pyrococcus horikoshii OT3]
 gi|3256729|dbj|BAA29412.1| 329aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 329

 Score = 37.3 bits (85), Expect = 8.3,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 30/126 (23%)

Query: 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239
           P  +      L                R + DP  GTGG L +A                
Sbjct: 167 PPRIARAMVNL------------TKATREVLDPFMGTGGMLIEAG------------LIG 202

Query: 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299
           L  +G ++  +        +    +     +          T  +++F GK F    ++P
Sbjct: 203 LKVYGLDIREDMVEGAKINLEYYGIRDYVVKVGDA------TKIEEVFPGKTFEAVATDP 256

Query: 300 PFGKKW 305
           P+G   
Sbjct: 257 PYGNST 262


>gi|313618721|gb|EFR90641.1| conserved hypothetical protein [Listeria innocua FSL S4-378]
          Length = 133

 Score = 37.3 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV 391
           S    LF+       +     GG    ++  +          +    +++ +N  IE I+
Sbjct: 17  SFAHFLFIEQGMRYTKP----GGYLFFLVPDAMFGTSDFAKVD----KFIKKNGHIEGII 68

Query: 392 ALPTDLFFRTNIATYLWILSNRKTE-ERRGKVQLINATDL 430
            LP  LF        + IL     + +   +V L N + L
Sbjct: 69  KLPETLFKSEQARKSILILRKADVDVKPPKEVLLANLSSL 108


>gi|327441466|dbj|BAK17831.1| Fe-S oxidoreductase [Solibacillus silvestris StLB046]
          Length = 762

 Score = 37.3 bits (85), Expect = 8.5,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 24/159 (15%)

Query: 85  EYSLSTLGSTNT---RNNLESYIASFSDNAKAIF--EDFDFSSTIARLEKAGLLYKICKN 139
           E+    L + N      N  + I +   +A  IF  E  DF      L    LLY + + 
Sbjct: 513 EFLFQELATANIDEFEKNGVTKIVTIDPHAYNIFKNEYQDFGWKGEVLHHTELLYDLIQ- 571

Query: 140 FSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALF 199
                L  D   D  +       + R+          F  PR+++     + L   +   
Sbjct: 572 --EGRLTMDYRVDETIVFHDSCYLGRYNDV-------FDPPREILKGIAGVKLVEMERNR 622

Query: 200 KESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238
           ++            CG GG L     HV +  +  +   
Sbjct: 623 EDG---------MCCGAGGGLMWMEEHVGNRINVARTEQ 652


>gi|188997476|ref|YP_001931727.1| ATPase AAA-2 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932543|gb|ACD67173.1| ATPase AAA-2 domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 814

 Score = 37.3 bits (85), Expect = 8.7,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 75/266 (28%), Gaps = 46/266 (17%)

Query: 340 MHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIR-RWLLEN-----------DLI 387
             + +K         R  I L  + L  G    G+ E R + +L+            D +
Sbjct: 216 QRIVSKKAPEILWNKRI-IALDLASLVAGTKYRGQFEERLKTILKELEKTPNIILFIDEL 274

Query: 388 EAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIR---NEGKKRRII 444
             +V          +    L   +  K    RG+VQ+I AT L    +    +G   R  
Sbjct: 275 HTMVG-------AGSAEGSLDASNMLKPALARGEVQVIGATTLDEYRKYIEKDGALERRF 327

Query: 445 NDDQRRQIL---------DIYVSRENGKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTG- 494
                              +    E              Y +  + + +  S        
Sbjct: 328 QPVIVDPPTPENTILILEGLKHKFEE------FHNVE--YTKEAIEKAVEYSVKYIPDRY 379

Query: 495 -----LARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLK 549
                +  L+      +L  L     L  L+  +++I          ++  K+++ +  +
Sbjct: 380 LPDKAIDLLDEAGALVRLRELELPQDLKQLEEEIKKIEDEKTKAIKEEDFDKASKLRDEE 439

Query: 550 VKASKSFIVAFINAFGRKDPRADPVT 575
           VK    F    +     +      VT
Sbjct: 440 VKLRAKFETLKLKWKEEQKETKPKVT 465


>gi|161598676|ref|NP_939354.2| glucose-1-phosphate adenylyltransferase [Corynebacterium
           diphtheriae NCTC 13129]
          Length = 408

 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 54/202 (26%), Gaps = 11/202 (5%)

Query: 194 PDDALFKESPGMIRTLYDPTCGT---GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
                 ++      T  DP+      G ++      +         P      G ++ P 
Sbjct: 176 NITEFLEKPADPPGTPDDPSMTFASMGNYVFSTDALIQALKEDENNPDSEHDMGGDIIPY 235

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
             ++  A +        P              + D F          +P F    ++   
Sbjct: 236 FVSMGQANVYDFNKNVVPGSTDRDRAYWRDVGTVDAFYEAHMDLISVHPVFNLYNQQWPI 295

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV-----LSSSPL 365
              +            G+   +  SM+    + +   +  +      +V     +  S +
Sbjct: 296 RSTERGDLPPAKFVQGGI---AQASMVAQGSIVSGSTVRNSVVSTDVVVEEGATVEGSVI 352

Query: 366 FNGRAGSGESEIRRWLLENDLI 387
             G      + +R  +L+ +++
Sbjct: 353 MPGARIGKGAVVRHCILDKNVV 374


>gi|97508214|sp|Q6NHY8|GLGC_CORDI RecName: Full=Glucose-1-phosphate adenylyltransferase; AltName:
           Full=ADP-glucose pyrophosphorylase; Short=ADPGlc PPase;
           AltName: Full=ADP-glucose synthase
 gi|38199847|emb|CAE49510.1| glucose-1-phosphate adenylyltransferase [Corynebacterium
           diphtheriae]
          Length = 427

 Score = 37.3 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 54/202 (26%), Gaps = 11/202 (5%)

Query: 194 PDDALFKESPGMIRTLYDPTCGT---GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250
                 ++      T  DP+      G ++      +         P      G ++ P 
Sbjct: 195 NITEFLEKPADPPGTPDDPSMTFASMGNYVFSTDALIQALKEDENNPDSEHDMGGDIIPY 254

Query: 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD 310
             ++  A +        P              + D F          +P F    ++   
Sbjct: 255 FVSMGQANVYDFNKNVVPGSTDRDRAYWRDVGTVDAFYEAHMDLISVHPVFNLYNQQWPI 314

Query: 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV-----LSSSPL 365
              +            G+   +  SM+    + +   +  +      +V     +  S +
Sbjct: 315 RSTERGDLPPAKFVQGGI---AQASMVAQGSIVSGSTVRNSVVSTDVVVEEGATVEGSVI 371

Query: 366 FNGRAGSGESEIRRWLLENDLI 387
             G      + +R  +L+ +++
Sbjct: 372 MPGARIGKGAVVRHCILDKNVV 393


>gi|257869411|ref|ZP_05649064.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803575|gb|EEV32397.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 387

 Score = 37.3 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 20/140 (14%)

Query: 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSH--------------HKIPPILVPHGQELEP 249
              R   DP CG+G    +A     +                   ++   +     E   
Sbjct: 193 RKDRPFVDPVCGSGTLCIEAALIGHNIAPGFNRSFVCETWDWVPAEVFETVRAQADEAAD 252

Query: 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS------KDLFTGKRFHYCLSNPPFGK 303
               + + G  I     +  +  ++ I  G +++      KD  T K +   ++NPP+G+
Sbjct: 253 YDSQLDIMGSDINGRMIEIAKANAEEIGLGDSITFKQQAVKDFKTDKEYGVIVANPPYGE 312

Query: 304 KWEKDKDAVEKEHKNGELGR 323
           +  +++       + GE+ R
Sbjct: 313 RLGEEETVQRLYREMGEVFR 332


>gi|169237551|ref|YP_001690755.1| hypothetical protein OE5350R [Halobacterium salinarum R1]
 gi|167728778|emb|CAP15650.1| hypothetical protein OE5350R [Halobacterium salinarum R1]
          Length = 1373

 Score = 37.3 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 69/245 (28%), Gaps = 43/245 (17%)

Query: 51  TRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLSTLGSTNTRNNLESYIASFSDN 110
              AV E Y        +    +       ++ S          +T  +L   +   SD 
Sbjct: 108 EEEAVLEAYRNACDDLAEEIDIL-------FDRSTAYSQIDPDDDTYEDLCGMLDQVSDE 160

Query: 111 A---KAIFE---DFDFSSTIARLEKAGLLYKI----CKNFSGIELHPDTVPDRVMSNIYE 160
                 +     ++     +  L+    L          F         + D  +  +Y 
Sbjct: 161 VWRADDVLGWVYEYYNRPVVEALDAKNTLEPEDVGPANQFYTPHWVVRMLTDNSLGKLY- 219

Query: 161 HLIRRFGSEVSEGAEDFMTPRD-------------VVHLATALLLDPDD-ALFKESPGMI 206
             +   G E +    + ++P +             V  L T L+ D +     +      
Sbjct: 220 --LEATGQESAVPEPEALSPEERKERLVTPEDSPSVPELCTYLIPDEEAGDAPEFDHPRE 277

Query: 207 RTLYDPTCGTGGFLTDAMNHVA---------DCGSHHKIPPILVPHGQELEPETHAVCVA 257
             + DP CG+G FL  A + +          D             +G +++  +  +   
Sbjct: 278 LRVIDPACGSGHFLLYAFDVLERIWWAETDLDRAEIPAKVLNHNLYGVDIDLRSCQLSAF 337

Query: 258 GMLIR 262
            + ++
Sbjct: 338 NLYLK 342


>gi|308273485|emb|CBX30087.1| hypothetical protein N47_D28960 [uncultured Desulfobacterium sp.]
          Length = 1305

 Score = 37.3 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 25/151 (16%)

Query: 44  LECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYN-TSEYSLSTLGSTNTRNNLES 102
            EC  +  +    + +         + + + V  Y F+    +  LS+   T  +   E+
Sbjct: 380 FECLDDKDKKIYIDGFSDNMSKTDGVINLLVVPDYLFFGREEKADLSSDYGTKNKGTKEA 439

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHL 162
            +         I + + F+       +  +                 +   ++  ++E+L
Sbjct: 440 AVKG----LINILKSYKFTIAENTPIEEDV----------------ALDPELLGKVFENL 479

Query: 163 IRRFGSEVS----EGAEDFMTPRDVVHLATA 189
           +  +  E      +    F TPR++V+    
Sbjct: 480 LASYNPETKTTARKQTGSFYTPREIVNYMVD 510


>gi|329766161|ref|ZP_08257720.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137432|gb|EGG41709.1| putative RNA methylase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 315

 Score = 37.3 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 43/230 (18%)

Query: 124 IARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH------LIRRFGSEVSEGAEDF 177
           I+ LE++  +  +   FS  ++     PD  +  I+ +        +RF  + +   +  
Sbjct: 101 ISELERS--MGDMITKFSKAQVSLKN-PDITIYLIFTNEENFFGFSKRF-EKQNRPIKIK 156

Query: 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237
             P ++    T  ++                + DP CGTG  L +A              
Sbjct: 157 KHPHELDWKLTRSMI------NLIGLKEGEVVCDPFCGTGTTLLEAE------------S 198

Query: 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLS 297
             +   G + + +   +    +                I +G   S+       F   ++
Sbjct: 199 MGIHAIGLDFDEKMFKISKENLDANGYN--------SKIIRGD-FSQLTKMIDEFDGIVT 249

Query: 298 NPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLE 347
           + P+G   +  ++  E   K      F   LPK    +++       KL+
Sbjct: 250 DLPYGTASKSSENPEELMKK------FVATLPKRKKLAIMCKKGFEEKLK 293


>gi|313897952|ref|ZP_07831492.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312957224|gb|EFR38852.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 1747

 Score = 37.3 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 85/305 (27%), Gaps = 64/305 (20%)

Query: 163 IRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222
           I  + +  +     F TP  V+     +         K+      T+ + +  TG F+  
Sbjct: 198 IEEYQNAKATTLTSFYTPLIVIENMYRI--------LKKIGFQKGTVLETSIATGNFIGM 249

Query: 223 AMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282
               +               +G E++  + ++                 L   I+  +  
Sbjct: 250 MQEQM---------FNESAIYGIEIDSVSASIAR--------------QLYPGIEVLNKG 286

Query: 283 SKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMH 341
            ++  +    F   +SN PFG     D    + + K                        
Sbjct: 287 FEECPYPDDCFDLAISNVPFGTYQLHDVTLNKFKFKIHNY-------------------- 326

Query: 342 LANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRT 401
              K       GG  A +       +     G S I  ++ +       + LP+D+F + 
Sbjct: 327 FFAKALQKIRNGGLIAFIT------SADTMDGSSNIMEYINDRADFLGAIRLPSDIFMKN 380

Query: 402 NIATYL---WILSNRKTEERRGKVQLINATDLWTSIRNEGK---KRRIINDDQRRQILDI 455
                +    I   R  ++     ++      +T  R   K   +   +      ++ + 
Sbjct: 381 GANALVTSDIIFLRRNDDKISDPYEISTEKVDYTEHRKINKYFVEHPEMVFGNIEEVKNQ 440

Query: 456 YVSRE 460
           Y   E
Sbjct: 441 YGGYE 445


>gi|291534511|emb|CBL07623.1| Restriction endonuclease S subunits [Roseburia intestinalis M50/1]
          Length = 536

 Score = 37.3 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 5/111 (4%)

Query: 338 FLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397
           F M     L L  N GGR  I L     F     S   ++R+++  +  I+ I  LP   
Sbjct: 213 FDMVALENLSLHLNSGGRLVITLPGRITFASGKVS---DLRQFIQTSYTIKEIAELPEGS 269

Query: 398 FFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQ 448
              T I  YL  + N + ++    + +   +      R        + DD 
Sbjct: 270 LEYTGIKVYLIDIENTRPDD--DDIIIRRYSAGDRKTRRSAVTSLEVTDDT 318


>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1257

 Score = 37.3 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 16/144 (11%)

Query: 82   NTSEYSLSTLGST----------NTRNNLESYIASFSDNAKAIFEDF-DFSSTIARLEKA 130
            N S   L+ L S           + R+ L + + +++     I + F  F      +   
Sbjct: 1061 NLSPGDLTDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEIIDCFVRFQEERDYVVND 1120

Query: 131  GLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATAL 190
             LLY + +      +       +V+ +++E LI     +  +         ++++     
Sbjct: 1121 ELLYVLIEE-DECNITEYVDVPKVLGDLFESLIGAIYLDSGKNLTKVW---EIIYSFMHK 1176

Query: 191  LLDPDDALFKESP-GMIRTLYDPT 213
             +D       + P  +I    D  
Sbjct: 1177 EIDEFSRNIPKQPIRVIYENTDIC 1200


>gi|189459533|ref|ZP_03008318.1| hypothetical protein BACCOP_00157 [Bacteroides coprocola DSM 17136]
 gi|198275035|ref|ZP_03207567.1| hypothetical protein BACPLE_01194 [Bacteroides plebeius DSM 17135]
 gi|189433785|gb|EDV02770.1| hypothetical protein BACCOP_00157 [Bacteroides coprocola DSM 17136]
 gi|198272482|gb|EDY96751.1| hypothetical protein BACPLE_01194 [Bacteroides plebeius DSM 17135]
          Length = 2040

 Score = 37.3 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 76/248 (30%), Gaps = 53/248 (21%)

Query: 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230
           +     F TP  V       +    D            + DP+ GTG F++    H    
Sbjct: 92  NSVLTAFYTPPKVADAIVEAI---WDTRIVPK-----RILDPSAGTGVFVSAVDFHA--- 140

Query: 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRR--DLSKNIQQGSTLSKDLFT 288
                  P       E +P T       ++++ L  + R      + I       +  + 
Sbjct: 141 -------PYAEITCFEKDPATG------LILKHLHPEKRVRVQGFERI-------EPKYA 180

Query: 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLEL 348
           G  +   +SN PFG     D    +             G   + +       +   K   
Sbjct: 181 GY-YDVAVSNIPFG-----DVALFDPFFSTHTDPVRRQGTRALHN-------YFFMKSVD 227

Query: 349 PPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF---RTNIAT 405
               GG  A + S   L    A  G   +R WL+      + + LP +LF     T + +
Sbjct: 228 MVREGGLVAFITSQGVL---NAEQG-RPVREWLMNRCEPVSAIRLPNNLFTEHAGTEVGS 283

Query: 406 YLWILSNR 413
            L IL  +
Sbjct: 284 DLVILQKK 291


>gi|118498368|ref|NP_004977.2| kinectin isoform c [Homo sapiens]
 gi|409466|gb|AAB65853.1| kinectin [Homo sapiens]
 gi|119601089|gb|EAW80683.1| kinectin 1 (kinesin receptor), isoform CRA_c [Homo sapiens]
 gi|119601091|gb|EAW80685.1| kinectin 1 (kinesin receptor), isoform CRA_d [Homo sapiens]
 gi|261858162|dbj|BAI45603.1| kinectin 1 [synthetic construct]
          Length = 1300

 Score = 37.3 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 2/161 (1%)

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            N +    + KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S     
Sbjct: 477 KNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKL 536

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPY 529
                 + ++ + L      ++  + + E  +  +    L Q+  L   ++    QI   
Sbjct: 537 TDTLVSKQQLEQRLMQLMESEQKRVNK-EESLQMQVQDILEQNEALKAQIQQFHSQIAAQ 595

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             A    +E  K    K  ++K ++  + +  +    K+  
Sbjct: 596 TSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEE 636


>gi|315425381|dbj|BAJ47046.1| type II restriction enzyme, methylase subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 806

 Score = 37.3 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 72/302 (23%)

Query: 28  HTDFGKVILP-FTLLRRLECA--LEPTRSAVREKYLAFGGSNIDLESFVKVAGY---SFY 81
            + + +  L     L  L+    L+  RS + +       + +  ES  K  G     F 
Sbjct: 179 ASSYAQRFLGRLMFLYFLQRKGWLKGDRSFINKINDYLELNRLFYESLNKKNGEEGIPFL 238

Query: 82  NTSEYSLSTLGSTNTRNNLESYIASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFS 141
           N S +      ++     L   + S   +A+  F  ++F      +++   L        
Sbjct: 239 NGSLFEREEYLTSKVEKELAMKMNSIFYDARNFFNRYNF-----TVDETTPLEVEVS--- 290

Query: 142 GIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLD---PDDAL 198
                   +   ++  + E+L+     +       F TP + +       +      +  
Sbjct: 291 --------IDPLLLGTVLENLLE---EKERGEKGTFYTPVNEIGFMCRRAIAAWLGLEEG 339

Query: 199 FKESPGMIR-------------------------------TLYDPTCGTGGFLTDAMNHV 227
            ++  G +R                                + DP  G+GGFL   M  +
Sbjct: 340 VQQRNGELRFVDGLQRYVDELKKRRDEREIREFREKLLTLKILDPAVGSGGFLVVMMQTI 399

Query: 228 ADCGSHHKIPPIL-------------VPHGQELEPETHAVCVAGMLIRRLESDPRRDLSK 274
                  +                    +G ++EPE   +    + +  +    + +   
Sbjct: 400 LQLIQEVEEAVGWKSDLEQYKRRIIPNLYGFDIEPEAVEIARLRIWLSLIVDQMQPEPLP 459

Query: 275 NI 276
           N+
Sbjct: 460 NL 461


>gi|317009412|gb|ADU79992.1| adenine specific DNA methyltransferase [Helicobacter pylori India7]
          Length = 2866

 Score = 37.3 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 81/259 (31%), Gaps = 53/259 (20%)

Query: 176  DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235
             + TP     L    +    D L   +    + +++P+ GTG F+           +H  
Sbjct: 998  AYYTP----KLIIDSIYQALDHLGFNNDNYQKEIFEPSLGTGKFI-----------AHAP 1042

Query: 236  IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYC 295
                    G EL+P + ++               + L  N    +T  ++    + +   
Sbjct: 1043 SDKNYRFSGTELDPISASIS--------------QFLYPNQVIQNTALENHQFYQDYDAF 1088

Query: 296  LSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355
            + NPP+G       +  E  +++                   FL     +L+      G 
Sbjct: 1089 VGNPPYGNHKIYSYNDKELSNESVHNY---------------FLGKAIKELKDD----GI 1129

Query: 356  AAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKT 415
             A V+  S  F         ++R  + +N      + LP  +F  T       I+  +K 
Sbjct: 1130 GAFVV--SSWFMDAKNP---KMREHIAQNATFLGAIRLPNSVFKATGAEVTSDIVFFKKG 1184

Query: 416  EERRGKVQLINATDLWTSI 434
             E+        A   +  I
Sbjct: 1185 VEKATNQSFTKAMPYYDKI 1203


>gi|283954305|ref|ZP_06371827.1| hypothetical protein C414_000160027 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794210|gb|EFC32957.1| hypothetical protein C414_000160027 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 441

 Score = 37.3 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 87/272 (31%), Gaps = 56/272 (20%)

Query: 103 YIASFSDNAKAIFEDFDFSSTIARLEK--AGLLYKICKNFSGIELHPDTVP--DRVMSNI 158
           Y+ S  D  +   +    S TI +  +       +I   FSG    P      ++     
Sbjct: 212 YLGSLKDRFQKNLQAIKLSKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKE 271

Query: 159 YEHLIR-----RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213
           ++ LI       +    +   + F TP     +    +    + L   +    + +++P+
Sbjct: 272 FKELISTLDYAEYEKAKTSTLDAFYTP----KIIIDTIYQGLNQLGFNNDDHTKEIFEPS 327

Query: 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLS 273
            G G FL+ A N+                   EL+  +  +                 L 
Sbjct: 328 AGIGSFLSYAKNY----------SDKYHFTCVELDTISANILK--------------HLH 363

Query: 274 KNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333
            N    +   +     K +   + NPPFG+K   D +               P L K S 
Sbjct: 364 PNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLND--------------PTLNKTSV 409

Query: 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365
            +  F+ +    L+      G AA V+SS  L
Sbjct: 410 HNY-FIGNAIKNLKED----GIAAFVVSSYFL 436


>gi|118498362|ref|NP_001072990.1| kinectin isoform b [Homo sapiens]
 gi|109658796|gb|AAI17133.1| Kinectin 1 (kinesin receptor) [Homo sapiens]
 gi|109731614|gb|AAI12338.1| Kinectin 1 (kinesin receptor) [Homo sapiens]
          Length = 1306

 Score = 37.3 bits (85), Expect = 9.9,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 62/161 (38%), Gaps = 2/161 (1%)

Query: 411 SNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY 470
            N +    + KVQL  A   W  +++  +KR   ++  ++ +   +V++EN   S     
Sbjct: 477 KNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKL 536

Query: 471 RTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDI-LKPMMQQIYPY 529
                 + ++ + L      ++  + + E  +  +    L Q+  L   ++    QI   
Sbjct: 537 TDTLVSKQQLEQRLMQLMESEQKRVNK-EESLQMQVQDILEQNEALKAQIQQFHSQIAAQ 595

Query: 530 GWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPR 570
             A    +E  K    K  ++K ++  + +  +    K+  
Sbjct: 596 TSASVLAEELHKVIAEKDKQIKQTEDSLASERDRLTSKEEE 636


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.142    0.423 

Lambda     K      H
   0.267   0.0437    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,254,485,012
Number of Sequences: 14124377
Number of extensions: 317105111
Number of successful extensions: 1058264
Number of sequences better than 10.0: 5945
Number of HSP's better than 10.0 without gapping: 2903
Number of HSP's successfully gapped in prelim test: 3042
Number of HSP's that attempted gapping in prelim test: 1027889
Number of HSP's gapped (non-prelim): 10183
length of query: 674
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 528
effective length of database: 2,780,634,588
effective search space: 1468175062464
effective search space used: 1468175062464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 85 (37.3 bits)